Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 221 of 297
Found at i:75047537 original size:30 final size:30
Alignment explanation
Indices: 75047503--75047562 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
75047493 ATGAATTGGA
75047503 AGCTTTGGCACTAAGTCCGCGATTTAAACT
1 AGCTTTGGCACTAAGTCCGCGATTTAAACT
**
75047533 AGCTTTGGCACTAAGTGTGCGATTTAAACT
1 AGCTTTGGCACTAAGTCCGCGATTTAAACT
75047563 TGAGGCACTA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.27, C:0.20, G:0.22, T:0.32
Consensus pattern (30 bp):
AGCTTTGGCACTAAGTCCGCGATTTAAACT
Found at i:75047589 original size:27 final size:27
Alignment explanation
Indices: 75047539--75047590 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
75047529 AACTAGCTTT
* **
75047539 GGCACTAAGTGTGCGATTTAAACTTGA
1 GGCACTAAGTGTACGATACAAACTTGA
*
75047566 GGCACTAAGTGTACGATACCAACTT
1 GGCACTAAGTGTACGATACAAACTT
75047591 AATCTTGGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.31, C:0.19, G:0.23, T:0.27
Consensus pattern (27 bp):
GGCACTAAGTGTACGATACAAACTTGA
Found at i:75049894 original size:47 final size:46
Alignment explanation
Indices: 75049789--75049919 Score: 129
Period size: 47 Copynumber: 2.8 Consensus size: 46
75049779 CACAATCGAT
* * *
75049789 AAGTACCTACACCATGGCCCGTAGCCAAATCAAGGTAACTTATTCCA
1 AAGTACCTATACCAT-GCCCTTAGCCAAATCAAGGTAACTCATTCCA
* * * **
75049836 AAGTACTTATACCATAGCCCTTAACCAAATCAAGGTAACTCCTCTCTG
1 AAGTACCTATACCAT-GCCCTTAGCCAAATCAAGGTAACTCAT-TCCA
**
75049884 AA-TACCTATACCATGTTCTGTAGCCAAATCAAGGTA
1 AAGTACCTATACCATGCCCT-TAGCCAAATCAAGGTA
75049920 TTATTCACAC
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
46 3 0.04
47 62 0.90
48 4 0.06
ACGTcount: A:0.34, C:0.27, G:0.13, T:0.25
Consensus pattern (46 bp):
AAGTACCTATACCATGCCCTTAGCCAAATCAAGGTAACTCATTCCA
Found at i:75053676 original size:130 final size:130
Alignment explanation
Indices: 75053440--75053702 Score: 508
Period size: 130 Copynumber: 2.0 Consensus size: 130
75053430 CAAACGACGG
75053440 TAGAACTCGACTCCCGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCTATGGTTTTTCAGCT
1 TAGAACTCGACTCCCGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCTATGGTTTTTCAGCT
75053505 TTTGGGTGATGAAGGAGATGACAATGTGGGGCTATAACCTTGATGTAGAATTGCCGACAGGTATC
66 TTTGGGTGATGAAGGAGATGACAATGTGGGGCTATAACCTTGATGTAGAATTGCCGACAGGTATC
*
75053570 TAGAACTCGACTCCCGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCTATGGTTTTTCGGCT
1 TAGAACTCGACTCCCGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCTATGGTTTTTCAGCT
*
75053635 TTTGGGTGATGAAGGAGATGACAATGTGGGGCTATATCCTTGATGTAGAATTGCCGACAGGTATC
66 TTTGGGTGATGAAGGAGATGACAATGTGGGGCTATAACCTTGATGTAGAATTGCCGACAGGTATC
75053700 TAG
1 TAG
75053703 GGTTTAGAAA
Statistics
Matches: 131, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
130 131 1.00
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (130 bp):
TAGAACTCGACTCCCGGAGTTTTGAAGTTTCGGCTATAAGCCCCCAAATCTATGGTTTTTCAGCT
TTTGGGTGATGAAGGAGATGACAATGTGGGGCTATAACCTTGATGTAGAATTGCCGACAGGTATC
Found at i:75055932 original size:28 final size:28
Alignment explanation
Indices: 75055869--75056019 Score: 205
Period size: 28 Copynumber: 5.4 Consensus size: 28
75055859 ATATTAAGTC
*
75055869 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
75055896 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
75055924 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
75055952 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
75055980 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
75056009 CGCACACTTAG
1 CGCACACTTAG
75056020 CGCCAATCTC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
27 22 0.20
28 74 0.67
29 15 0.14
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:75059060 original size:28 final size:28
Alignment explanation
Indices: 75059027--75059082 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
75059017 TTGTTACTCT
75059027 TTCCCACTTCCATAGCAGAATTTTCACA
1 TTCCCACTTCCATAGCAGAATTTTCACA
*
75059055 TTCCCACTTCCATAGCGGAATTTTCACA
1 TTCCCACTTCCATAGCAGAATTTTCACA
75059083 GGTTGCAGTA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (28 bp):
TTCCCACTTCCATAGCAGAATTTTCACA
Found at i:75074071 original size:25 final size:25
Alignment explanation
Indices: 75074034--75074104 Score: 81
Period size: 25 Copynumber: 2.8 Consensus size: 25
75074024 GGGTGTTACA
* * *
75074034 AGCTTACTATTACATGGCTCACATG
1 AGCTCACTGTTACATGGATCACATG
*
75074059 AGCTCACTGTTACATGGATCACATT
1 AGCTCACTGTTACATGGATCACATG
*
75074084 AGCTTC-CTGTTATATGGATCA
1 AGC-TCACTGTTACATGGATCA
75074105 AGACTGTGCT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 38 0.95
26 2 0.05
ACGTcount: A:0.27, C:0.23, G:0.17, T:0.34
Consensus pattern (25 bp):
AGCTCACTGTTACATGGATCACATG
Found at i:75079079 original size:20 final size:21
Alignment explanation
Indices: 75079045--75079084 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
75079035 GCAGATTATG
*
75079045 TGTACCAAAGAATTTAGAACT
1 TGTACAAAAGAATTTAGAACT
*
75079066 TGTACAAAAG-ATTTTGAAC
1 TGTACAAAAGAATTTAGAAC
75079085 GAAGCTCATA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 8 0.47
21 9 0.53
ACGTcount: A:0.42, C:0.12, G:0.15, T:0.30
Consensus pattern (21 bp):
TGTACAAAAGAATTTAGAACT
Found at i:75101131 original size:45 final size:45
Alignment explanation
Indices: 75101082--75101172 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
75101072 CCAAAACATG
75101082 TGTCACATATATCATGAACTAAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCATGAACTAAGACCACAACTCAATGAGTTCAGA
*
75101127 TGTCACATATATCATGAACTCAGACCACAACTCAATGAGTTCAGA
1 TGTCACATATATCATGAACTAAGACCACAACTCAATGAGTTCAGA
75101172 T
1 T
75101173 CACATAATTC
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.25
Consensus pattern (45 bp):
TGTCACATATATCATGAACTAAGACCACAACTCAATGAGTTCAGA
Found at i:75101170 original size:21 final size:21
Alignment explanation
Indices: 75101103--75101176 Score: 60
Period size: 21 Copynumber: 3.4 Consensus size: 21
75101093 TCATGAACTA
75101103 AGACCACAACTCAATGAGTTC
1 AGACCACAACTCAATGAGTTC
* * **
75101124 AGATGTCACATATATC-ATGAACTC
1 AGA--CCACA-A-CTCAATGAGTTC
75101148 AGACCACAACTCAATGAGTTC
1 AGACCACAACTCAATGAGTTC
*
75101169 AGATCACA
1 AGACCACA
75101177 TAATTCCTAT
Statistics
Matches: 39, Mismatches: 9, Indels: 10
0.67 0.16 0.17
Matches are distributed among these distances:
20 2 0.05
21 17 0.44
22 4 0.10
23 4 0.10
24 10 0.26
25 2 0.05
ACGTcount: A:0.39, C:0.26, G:0.14, T:0.22
Consensus pattern (21 bp):
AGACCACAACTCAATGAGTTC
Found at i:75105982 original size:40 final size:40
Alignment explanation
Indices: 75105937--75107321 Score: 2484
Period size: 40 Copynumber: 34.6 Consensus size: 40
75105927 CAAGCTCAAT
* * * * *
75105937 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCGCACGAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* *
75105977 TGCCTTCGGGTCTTAGCCCGGATATATCAACTT-GCACAAT
1 TGCCTTCGGGTCTTATCCCGGATATATCAA-TTCGCACAAA
* *
75106017 TGCCTTCGGGTCTTAGCCCAGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* * *
75106057 CGCCGTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106097 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
75106137 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106177 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106217 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106257 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106297 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106337 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106377 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106417 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106457 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106497 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106537 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106577 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106617 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106657 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106697 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106737 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106777 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106817 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
75106857 TGCCTTCGGGTCTTATCCCGGATATATCAAATCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* *
75106897 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGGACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75106937 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* *
75106977 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGGACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
75107017 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* * *
75107057 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGGACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* *
75107097 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGGACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* *
75107137 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGGACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
75107177 TGCCTTCGGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
75107217 TGCCTTCGGGTCTTATCCCTGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
* *
75107257 TGCCTTCAGGTCTTAGCCCGGATATATCAATTCGCACAAA
1 TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
*
75107297 TGCCTTCGGGTCTTAGCCCGGATAT
1 TGCCTTCGGGTCTTATCCCGGATAT
75107322 CATTCAAATG
Statistics
Matches: 1306, Mismatches: 37, Indels: 4
0.97 0.03 0.00
Matches are distributed among these distances:
39 2 0.00
40 1303 1.00
41 1 0.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (40 bp):
TGCCTTCGGGTCTTATCCCGGATATATCAATTCGCACAAA
Found at i:75147131 original size:79 final size:81
Alignment explanation
Indices: 75146995--75147179 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
75146985 TTGAATGATG
* *
75146995 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
75147059 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
75147074 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
75147136 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
75147154 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
75147180 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:75147193 original size:40 final size:40
Alignment explanation
Indices: 75146996--75147179 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
75146986 TGAATGATGT
* * * *
75146996 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
75147036 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
75147076 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
75147114 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
75147155 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
75147180 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:75147201 original size:79 final size:79
Alignment explanation
Indices: 75146996--75147212 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 79
75146986 TGAATGATGT
** * * * ** *
75146996 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCAAT
*
75147059 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
75147076 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAATTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
*
75147141 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
75147155 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
75147213 TACGTGATTT
Statistics
Matches: 115, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
78 3 0.03
79 70 0.61
80 42 0.37
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCAATTGT
GCGAGATACTAATA
Found at i:75161276 original size:18 final size:17
Alignment explanation
Indices: 75161249--75161290 Score: 57
Period size: 18 Copynumber: 2.4 Consensus size: 17
75161239 TTAAATCAAG
75161249 AAAAAACAAAAACAAAA
1 AAAAAACAAAAACAAAA
*
75161266 AAAAAACCAAAAAGAAAA
1 AAAAAA-CAAAAACAAAA
75161284 AGAAAAA
1 A-AAAAA
75161291 GTAAACGAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 11 0.50
19 5 0.23
ACGTcount: A:0.86, C:0.10, G:0.05, T:0.00
Consensus pattern (17 bp):
AAAAAACAAAAACAAAA
Found at i:75161291 original size:12 final size:12
Alignment explanation
Indices: 75161250--75161291 Score: 50
Period size: 12 Copynumber: 3.5 Consensus size: 12
75161240 TAAATCAAGA
*
75161250 AAAAACAAAAAC
1 AAAAAGAAAAAC
75161262 AAAAA-AAAAACC
1 AAAAAGAAAAA-C
*
75161274 AAAAAGAAAAAG
1 AAAAAGAAAAAC
75161286 AAAAAG
1 AAAAAG
75161292 TAAACGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
11 5 0.19
12 17 0.63
13 5 0.19
ACGTcount: A:0.83, C:0.10, G:0.07, T:0.00
Consensus pattern (12 bp):
AAAAAGAAAAAC
Found at i:75161783 original size:42 final size:42
Alignment explanation
Indices: 75161716--75162173 Score: 558
Period size: 42 Copynumber: 10.9 Consensus size: 42
75161706 AAATTAATTG
*
75161716 CATTTAGAGGCCCAGGTGTGTAGGTCCATTTACTTTTCATTA
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * *
75161758 CATTTAGAGGCCCAGATGTGGAGGTCAATTTACTTTTCATTG
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * * * *
75161800 CATTTAAAGTCCCAGGTGTGAAGGTCCATTCACTTTTCAATA
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * * *
75161842 CATTTAGAGGCACAAGTGTGGAGGTCCATTTACTTTTCAATG
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * * *
75161884 CATTTAGAGGCCCAGGTGTTGAGGTTCATTAAATTTTCATTA
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * * *
75161926 CATTTAGAGACCCAGGTGTGGAGGTTCATTCACTTTTCATTG
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * * * *
75161968 CATTTAGAGGCCCAAGTATGGGGGCCCATTTACTTTTCATTG
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * *
75162010 TATTTAGAGACCCAGGTGTAGAGGTCCATTTACTTTTCATTA
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * * *
75162052 CATTTAGAGGCCTAGGTATTGAGGTCCATTCACTTTTCATTA
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
* * *
75162094 CATTTAGAGACCCAGGTGTGGAGGTCC-TCTGACTTTTCATTG
1 CATTTAGAGGCCCAGGTGTGGAGGTCCAT-TTACTTTTCATTA
**
75162136 CATTTAGAAACCCAGGTGTGGAGGTCCATTTACTTTTC
1 CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTC
75162174 TAGTTTACAT
Statistics
Matches: 353, Mismatches: 61, Indels: 4
0.84 0.15 0.01
Matches are distributed among these distances:
41 1 0.00
42 351 0.99
43 1 0.00
ACGTcount: A:0.24, C:0.19, G:0.22, T:0.36
Consensus pattern (42 bp):
CATTTAGAGGCCCAGGTGTGGAGGTCCATTTACTTTTCATTA
Found at i:75162506 original size:72 final size:72
Alignment explanation
Indices: 75162389--75162532 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
75162379 TGTGAATTAA
*
75162389 TTCAAAAAGGAGCTAGTTGACGAAGTTAGAAAAGATGATAGATGAATTATAAGGAGTAATTAATA
1 TTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATGAATTATAAGGAGTAATTAATA
75162454 ATAGGGT
66 ATAGGGT
75162461 TTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATGAATTATAAGGAGTAATTAATA
1 TTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATGAATTATAAGGAGTAATTAATA
75162526 ATAGGGT
66 ATAGGGT
75162533 GAGGAAGCAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.44, C:0.05, G:0.24, T:0.26
Consensus pattern (72 bp):
TTCAAAAAGGACCTAGTTGACGAAGTTAGAAAAGATGATAGATGAATTATAAGGAGTAATTAATA
ATAGGGT
Found at i:75162988 original size:51 final size:51
Alignment explanation
Indices: 75162922--75163026 Score: 210
Period size: 51 Copynumber: 2.1 Consensus size: 51
75162912 TGGTCCTTTA
75162922 GATCAAGGTATGTTCAATGATATTTTTGGAAGCTTACACTACCTTTGGGGT
1 GATCAAGGTATGTTCAATGATATTTTTGGAAGCTTACACTACCTTTGGGGT
75162973 GATCAAGGTATGTTCAATGATATTTTTGGAAGCTTACACTACCTTTGGGGT
1 GATCAAGGTATGTTCAATGATATTTTTGGAAGCTTACACTACCTTTGGGGT
75163024 GAT
1 GAT
75163027 GAGTGTAGAT
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
51 54 1.00
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (51 bp):
GATCAAGGTATGTTCAATGATATTTTTGGAAGCTTACACTACCTTTGGGGT
Found at i:75164088 original size:27 final size:27
Alignment explanation
Indices: 75164057--75164234 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75164047 TAAATTGTAC
75164057 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75164084 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75164110 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75164138 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75164166 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75164193 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75164220 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75164235 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75164171 original size:82 final size:81
Alignment explanation
Indices: 75164058--75164213 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75164048 AAATTGTACA
* *
75164058 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75164122 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75164139 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75164204 TGCGAGTTGA
65 TGCGAATTGA
75164214 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75164225 original size:82 final size:81
Alignment explanation
Indices: 75164054--75164234 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75164044 GATTAAATTG
* *
75164054 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75164119 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75164135 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75164199 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75164217 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75164235 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75166300 original size:24 final size:24
Alignment explanation
Indices: 75166268--75166324 Score: 98
Period size: 23 Copynumber: 2.4 Consensus size: 24
75166258 TAAAGGTTTC
*
75166268 TTTAAAAAAAGTTTGGTTTTTTTT
1 TTTAAAAAAAGTTTAGTTTTTTTT
75166292 TTT-AAAAAAGTTTAGTTTTTTTT
1 TTTAAAAAAAGTTTAGTTTTTTTT
75166315 TTTAAAAAAA
1 TTTAAAAAAA
75166325 AAGAGAAAGT
Statistics
Matches: 31, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
23 22 0.71
24 9 0.29
ACGTcount: A:0.37, C:0.00, G:0.09, T:0.54
Consensus pattern (24 bp):
TTTAAAAAAAGTTTAGTTTTTTTT
Found at i:75166570 original size:153 final size:152
Alignment explanation
Indices: 75166304--75166745 Score: 510
Period size: 153 Copynumber: 2.9 Consensus size: 152
75166294 TAAAAAAGTT
* * * * **
75166304 TAGTTTTTTTTTTTAAAAAAAAAGAGAAAGTTTAGGTTTTAACAAATAAAGGTATGTGTTTTTTT
1 TAGTGTTTTTTTTTAAAAAAAAGGAGAAAGTTTAGTTTTTGA-AAATAAAAATATGT-TTTTTTT
* ** * *
75166369 AGTTATTTTAAAGGAAAGTTT-AAA-TTTAAAAAAAAATTATTTTTTTTTTCAACTATTTTAAAG
64 AGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATT-TTGATTTTTTCAACTATTTCAAAA
*
75166432 TAAAAGCTTTGATCTTTAAGAAAAA
128 TAAAAGCTTTAATCTTTAAGAAAAA
*
75166457 TAGTGTTTTTTTTTAAATAAAAGGAGAAAGTTTAGTTTTTGAAAATTAAAAATATGTTTTTTTTA
1 TAGTGTTTTTTTTTAAAAAAAAGGAGAAAGTTTAGTTTTTGAAAA-TAAAAATATGTTTTTTTTA
* * * * * *
75166522 GTCATTTTAAAGGGAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTCAACTACTCCAAAATT
65 GTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTTGATTTTTTCAACTATTTCAAAATA
*
75166587 AAAGCTTTAATTTTTAAGAAAAA
130 AAAGCTTTAATCTTTAAGAAAAA
* * * * *
75166610 TAGTGATTTTTTTTAACAAAAAAAGAAAGGGAAAGCTTAGATTTTGGAAAATAAAAATTTGTTTT
1 TAGTG-TTTTTTTTTA-AAAAAAAG---GAGAAAGTTTAG-TTTTTGAAAATAAAAATATGTTTT
* * * * *
75166675 TTTAAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAATAAATTTTTGATTTTTTTAACTATTTCG
60 TTTTAGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTTGATTTTTTCAACTATTTCA
75166740 AAATAA
125 AAATAA
75166746 GGTTTTGATT
Statistics
Matches: 245, Mismatches: 35, Indels: 13
0.84 0.12 0.04
Matches are distributed among these distances:
152 29 0.12
153 94 0.38
154 21 0.09
155 7 0.03
158 85 0.35
159 9 0.04
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (152 bp):
TAGTGTTTTTTTTTAAAAAAAAGGAGAAAGTTTAGTTTTTGAAAATAAAAATATGTTTTTTTTAG
TCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTTGATTTTTTCAACTATTTCAAAATAA
AAGCTTTAATCTTTAAGAAAAA
Found at i:75166700 original size:158 final size:152
Alignment explanation
Indices: 75166310--75166765 Score: 485
Period size: 158 Copynumber: 3.0 Consensus size: 152
75166300 AGTTTAGTTT
* * * *
75166310 TTTTTTTTAAAAAAAAA-GAGAAAGTTTAGGTTTT--AACAAATAAAGGTATGTGTTTTTTTAGT
1 TTTTTTTTAAAAAAAAAGGAGAAAGCTTA-GTTTTGGAA-AATTAAA--AATATGTTTTTTTAGT
* ** * * *
75166372 TATTTTAAAGGAAAGTTT-AAA-TTTAAAAAAAAATTATTTTTTTTTTCAACTATTTTAAAGTAA
62 CATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATT-TTGATTTTTTCAACTATTTCAAAATTA
*
75166435 AAGCTTTGATCTTTAAGAAAAATAGTG
126 AAGCTTTGATTTTTAAGAAAAATAGTG
* * * *
75166462 TTTTTTTTTAAATAAAAGGAGAAAGTTTAGTTTTTGAAAATTAAAAATATGTTTTTTTTAGTCAT
1 TTTTTTTTAAAAAAAAAGGAGAAAGCTTAGTTTTGGAAAATTAAAAATATG-TTTTTTTAGTCAT
* * * * *
75166527 TTTAAAGGGAAGTTTAAAATTTTAAAACAAAGTTTTGATTTTTTCAACTACTCCAAAATTAAAGC
65 TTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTTGATTTTTTCAACTATTTCAAAATTAAAGC
*
75166592 TTTAATTTTTAAGAAAAATAGTG
130 TTTGATTTTTAAGAAAAATAGTG
* *
75166615 ATTTTTTTTAACAAAAAAAGAAAGGGAAAGCTTAGATTTTGGAAAA-TAAAAATTTGTTTTTTTA
1 -TTTTTTTTAA-AAAAAAAG---GAGAAAGCTTAG-TTTTGGAAAATTAAAAATATGTTTTTTT-
* * * *
75166679 AGTCATTTTAAAGGAAAGTTTAAAATTTTAAAATAAATTTTTGATTTTTTTAACTATTTCGAAA-
59 AGTCATTTTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTTGATTTTTTCAACTATTTCAAAAT
* *
75166743 TAAGGTTTTGATTTTTAAGAAAA
124 TAAAGCTTTGATTTTTAAGAAAA
75166766 TTAATAATTT
Statistics
Matches: 257, Mismatches: 34, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
151 4 0.02
152 46 0.18
153 65 0.25
154 23 0.09
155 7 0.03
157 27 0.11
158 76 0.30
159 9 0.04
ACGTcount: A:0.41, C:0.04, G:0.12, T:0.43
Consensus pattern (152 bp):
TTTTTTTTAAAAAAAAAGGAGAAAGCTTAGTTTTGGAAAATTAAAAATATGTTTTTTTAGTCATT
TTAAAGGAAAGTTTAAAATTTTAAAAAAAAATTTTGATTTTTTCAACTATTTCAAAATTAAAGCT
TTGATTTTTAAGAAAAATAGTG
Found at i:75166731 original size:30 final size:31
Alignment explanation
Indices: 75166697--75166758 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 31
75166687 TAAAGGAAAG
* *
75166697 TTTAA-AATTTTAAAATAAATTTTTGATTTT
1 TTTAACAATTTCAAAATAAAGTTTTGATTTT
* * *
75166727 TTTAACTATTTCGAAATAAGGTTTTGATTTT
1 TTTAACAATTTCAAAATAAAGTTTTGATTTT
75166758 T
1 T
75166759 AAGAAAATTA
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
30 5 0.19
31 21 0.81
ACGTcount: A:0.34, C:0.03, G:0.08, T:0.55
Consensus pattern (31 bp):
TTTAACAATTTCAAAATAAAGTTTTGATTTT
Found at i:75169018 original size:21 final size:21
Alignment explanation
Indices: 75168992--75169036 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
75168982 CATGTTTCAA
75168992 TTGCTTTAACTTATTAATTCC
1 TTGCTTTAACTTATTAATTCC
75169013 TTGCTTTAACTTATTAATTCC
1 TTGCTTTAACTTATTAATTCC
75169034 TTG
1 TTG
75169037 AATCATAGAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.18, G:0.07, T:0.53
Consensus pattern (21 bp):
TTGCTTTAACTTATTAATTCC
Found at i:75171183 original size:6 final size:6
Alignment explanation
Indices: 75171169--75171207 Score: 51
Period size: 6 Copynumber: 6.2 Consensus size: 6
75171159 TTAAATTCTG
*
75171169 TTTTGT TTTTAT TTTTAT TTTTATT TGTTTAT TTTTAT T
1 TTTTAT TTTTAT TTTTAT TTTTA-T T-TTTAT TTTTAT T
75171208 CCCACAACAG
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
6 22 0.73
7 4 0.13
8 4 0.13
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (6 bp):
TTTTAT
Found at i:75171201 original size:14 final size:13
Alignment explanation
Indices: 75171169--75171207 Score: 53
Period size: 14 Copynumber: 3.0 Consensus size: 13
75171159 TTAAATTCTG
*
75171169 TTTTGTTTTTA-T
1 TTTTATTTTTATT
75171181 TTTTATTTTTATT
1 TTTTATTTTTATT
75171194 TGTTTATTTTTATT
1 T-TTTATTTTTATT
75171208 CCCACAACAG
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
12 10 0.42
13 2 0.08
14 12 0.50
ACGTcount: A:0.13, C:0.00, G:0.05, T:0.82
Consensus pattern (13 bp):
TTTTATTTTTATT
Found at i:75171781 original size:19 final size:18
Alignment explanation
Indices: 75171754--75171790 Score: 56
Period size: 19 Copynumber: 2.0 Consensus size: 18
75171744 AATTTTAGGG
*
75171754 CTTTTATTCTTAGATTTTT
1 CTTTCATTCTTAG-TTTTT
75171773 CTTTCATTCTTAGTTTTT
1 CTTTCATTCTTAGTTTTT
75171791 ACTTAGGTTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 5 0.29
19 12 0.71
ACGTcount: A:0.14, C:0.14, G:0.05, T:0.68
Consensus pattern (18 bp):
CTTTCATTCTTAGTTTTT
Found at i:75174215 original size:15 final size:15
Alignment explanation
Indices: 75174195--75174224 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
75174185 ATGAAAATAT
*
75174195 ATTTGAATGAGTTTA
1 ATTTGAATAAGTTTA
75174210 ATTTGAATAAGTTTA
1 ATTTGAATAAGTTTA
75174225 GATCACGAAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.37, C:0.00, G:0.17, T:0.47
Consensus pattern (15 bp):
ATTTGAATAAGTTTA
Found at i:75174786 original size:56 final size:56
Alignment explanation
Indices: 75174690--75174897 Score: 308
Period size: 56 Copynumber: 3.7 Consensus size: 56
75174680 GAAGTATATG
* * * *
75174690 TGGCATCGATATGTGATTCTGATATATGTGTCCGATTAAGTCCACGTTTCATACAT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* * * *
75174746 TGGCTTCGATATGTGATTTCGATATATGTGTACGAGTAAGTCCATGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* * *
75174802 TTGCATCGATATGAGATTCCGATATATGTGTGCGAGTAAGTCCACATTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
*
75174858 TGGCATCGATATGTGATTCCGATATATGTGTGTGAGTAAG
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAG
75174898 ACCCTCTTTG
Statistics
Matches: 135, Mismatches: 17, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
56 135 1.00
ACGTcount: A:0.25, C:0.15, G:0.23, T:0.37
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
Found at i:75174920 original size:112 final size:111
Alignment explanation
Indices: 75174689--75174931 Score: 315
Period size: 112 Copynumber: 2.2 Consensus size: 111
75174679 GGAAGTATAT
* * * *
75174689 GTGGCATCGATATGTGATTCTGATATATGTGTCCGATTAAGTCCACGTTTCATACATTGGCTTCG
1 GTGGCATCGATATGTGATTCCGATATATGTGTCCGAGTAAGTCCACATTTCATACATTGGCATCG
* * * *
75174754 ATATGTGATTTCGATATATGTGTACGAGTAAGTCCATGTTTCATAC
66 ATATGTGATTCCGATATATGTGTACGAGTAAGACCATCTTTCAGAC
* * * *
75174800 GTTTGCATCGATATGAGATTCCGATATATGTGTGCGAGTAAGTCCACATTTCATACGTTGGCATC
1 G-TGGCATCGATATGTGATTCCGATATATGTGTCCGAGTAAGTCCACATTTCATACATTGGCATC
** * **
75174865 GATATGTGATTCCGATATATGTGTGTGAGTAAGACCCTCTTTGGGAC
65 GATATGTGATTCCGATATATGTGTACGAGTAAGACCATCTTTCAGAC
75174912 AGTGGCATCGATATGTGATT
1 -GTGGCATCGATATGTGATT
75174932 ACATGTAAGA
Statistics
Matches: 111, Mismatches: 19, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
111 1 0.01
112 109 0.98
113 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.36
Consensus pattern (111 bp):
GTGGCATCGATATGTGATTCCGATATATGTGTCCGAGTAAGTCCACATTTCATACATTGGCATCG
ATATGTGATTCCGATATATGTGTACGAGTAAGACCATCTTTCAGAC
Found at i:75177446 original size:5 final size:5
Alignment explanation
Indices: 75177436--75177460 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
75177426 CAAGCTATAC
75177436 GAAAA GAAAA GAAAA GAAAA GAAAA
1 GAAAA GAAAA GAAAA GAAAA GAAAA
75177461 ACTGATTTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.80, C:0.00, G:0.20, T:0.00
Consensus pattern (5 bp):
GAAAA
Found at i:75181101 original size:29 final size:29
Alignment explanation
Indices: 75181034--75181091 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
75181024 AAAGTAAATT
75181034 ACAAATTGATATTGAAAATGAAAATAATC
1 ACAAATTGATATTGAAAATGAAAATAATC
75181063 ACAAATTGATATTGAAAATGAAAATAATC
1 ACAAATTGATATTGAAAATGAAAATAATC
75181092 TATGTTTGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.55, C:0.07, G:0.10, T:0.28
Consensus pattern (29 bp):
ACAAATTGATATTGAAAATGAAAATAATC
Found at i:75181448 original size:56 final size:56
Alignment explanation
Indices: 75181362--75181626 Score: 395
Period size: 56 Copynumber: 4.7 Consensus size: 56
75181352 GAAGTATATG
* *
75181362 TGGCATTGATATGTGATTCCGATATATGTGTGCGAGTAAGTACACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
75181418 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* *
75181474 TGGCATCGAAATGTGATTCCGATATATGTGTGCGAGTAAGTCGACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* * ** * *
75181530 TAGCATCGATATATGATTCTAATATATGTGTACAAGTAAGTCCACGTTTCATACGT
1 TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
* ** *
75181586 TGGCTTCGATATGTGATTTTTGATATATGTGTGTGAGTAAG
1 TGGCATCGATATGTGA-TTCCGATATATGTGTGCGAGTAAG
75181627 ACCCTGTCTG
Statistics
Matches: 188, Mismatches: 20, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
56 169 0.90
57 19 0.10
ACGTcount: A:0.26, C:0.14, G:0.24, T:0.36
Consensus pattern (56 bp):
TGGCATCGATATGTGATTCCGATATATGTGTGCGAGTAAGTCCACGTTTCATACGT
Found at i:75182024 original size:56 final size:56
Alignment explanation
Indices: 75181938--75182057 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
75181928 ACAAGGGATG
75181938 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
75181994 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
75182050 ATGGGCAA
1 ATGGGCAA
75182058 TAAACTAATA
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:75183271 original size:40 final size:39
Alignment explanation
Indices: 75183187--75183371 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
75183177 TCGAATGATG
* * * *
75183187 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
75183227 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
75183267 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
75183306 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
*
75183347 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
75183372 AATGAGTAGC
Statistics
Matches: 124, Mismatches: 17, Indels: 8
0.83 0.11 0.05
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:75183323 original size:79 final size:81
Alignment explanation
Indices: 75183187--75183369 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
75183177 TCGAATGATG
* *
75183187 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
75183251 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
75183266 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
75183328 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
75183346 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
75183370 TGAATGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:75183404 original size:79 final size:78
Alignment explanation
Indices: 75183224--75183404 Score: 179
Period size: 79 Copynumber: 2.3 Consensus size: 78
75183214 CTAAGTGACC
*
75183224 ATATCCGGACTAAGA-TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCA
1 ATATCCGGA-TAA-ATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCA
**
75183288 TTGGTGCGAGTTACT
64 TTGGAACGAGTTACT
* * * * * *
75183303 AAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGC
1 ATATCC-GGATAAATTCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGC
* *
75183367 ATTTGAATGAG-TAGCT
63 ATTGGAACGAGTTA-CT
*
75183383 ATATCCGGATAAATTCTGAAGG
1 ATATCCGGATAAATTCCGAAGG
75183405 TACGTGATTT
Statistics
Matches: 81, Mismatches: 16, Indels: 10
0.76 0.15 0.09
Matches are distributed among these distances:
78 2 0.02
79 54 0.67
80 25 0.31
ACGTcount: A:0.28, C:0.20, G:0.27, T:0.25
Consensus pattern (78 bp):
ATATCCGGATAAATTCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
GGAACGAGTTACT
Found at i:75198172 original size:14 final size:14
Alignment explanation
Indices: 75198153--75198179 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
75198143 CACAATCGAT
75198153 AAAATTTTCATATC
1 AAAATTTTCATATC
75198167 AAAATTTTCATAT
1 AAAATTTTCATAT
75198180 GACCTTCCTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.44, C:0.11, G:0.00, T:0.44
Consensus pattern (14 bp):
AAAATTTTCATATC
Found at i:75204967 original size:43 final size:43
Alignment explanation
Indices: 75204848--75204967 Score: 111
Period size: 43 Copynumber: 2.8 Consensus size: 43
75204838 CGTACCAACT
** *
75204848 CCATATCCCAAATATGGTCTTACTTGTGAA-CTCATATCGATG
1 CCATATCCCAAATATGGTCTTACACGTAAATCTCATATCGATG
* * ** ** *
75204890 CCAATAGCCTAGCTATCATCCTACAC--AAAGTCTCATATCGATG
1 CC-ATATCCCAAATATGGTCTTACACGTAAA-TCTCATATCGATG
75204933 CCATATCCCAAATATGGTCTTACACGTAAATCTCA
1 CCATATCCCAAATATGGTCTTACACGTAAATCTCA
75204968 ATAACCCTAA
Statistics
Matches: 56, Mismatches: 17, Indels: 9
0.68 0.21 0.11
Matches are distributed among these distances:
41 2 0.04
42 18 0.32
43 33 0.59
44 3 0.05
ACGTcount: A:0.32, C:0.28, G:0.12, T:0.29
Consensus pattern (43 bp):
CCATATCCCAAATATGGTCTTACACGTAAATCTCATATCGATG
Found at i:75211988 original size:43 final size:43
Alignment explanation
Indices: 75211941--75212055 Score: 144
Period size: 43 Copynumber: 2.7 Consensus size: 43
75211931 TGTGATTGCA
* *
75211941 TGTAAGACCATGTTTGGGACATTGGCATTG-TATTATGATTAT-G
1 TGTAAGACCATGTCTGGGACATTGGCATTGTTATT-CGATT-TCG
*
75211984 TGTAAGACCATGTCTGTGACATTGGCATTGTTATTCGATTTCG
1 TGTAAGACCATGTCTGGGACATTGGCATTGTTATTCGATTTCG
* * *
75212027 TGTAAGACCCTATCTGGGACAGTGGCATT
1 TGTAAGACCATGTCTGGGACATTGGCATT
75212056 AATATATGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
42 1 0.02
43 58 0.92
44 4 0.06
ACGTcount: A:0.23, C:0.15, G:0.25, T:0.37
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATTGTTATTCGATTTCG
Found at i:75216992 original size:94 final size:94
Alignment explanation
Indices: 75216829--75217016 Score: 313
Period size: 94 Copynumber: 2.0 Consensus size: 94
75216819 AATGTGACCG
* *
75216829 TATATGCTATTTGAATTAAGTAAGTTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCG
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCA
* * * *
75216894 GAATTAAATGTCACTTTGTGTGCAGATTT
66 GAATTAAATGGCAATATGAGTGCAGATTT
*
75216923 TATATGCTATTTGAATTAAGTAAATTGCCTTATTATAATGAGTTAACATTGGCACTATGTGTGCA
1 TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCA
75216988 GAATTAAATGGCAATATGAGTGCAGATTT
66 GAATTAAATGGCAATATGAGTGCAGATTT
75217017 GAATGTCGAT
Statistics
Matches: 87, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
94 87 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (94 bp):
TATATGCTATTTGAATTAAGTAAATTGCCATATTATAATGAGTTAACATTGGCACTATGTGTGCA
GAATTAAATGGCAATATGAGTGCAGATTT
Found at i:75223992 original size:70 final size:70
Alignment explanation
Indices: 75223916--75224050 Score: 234
Period size: 70 Copynumber: 1.9 Consensus size: 70
75223906 TAGTTTATTA
* * * *
75223916 CTAATTAATTTGCTGCTGTAATGCTGTAAATTATTGGCTGTCCAAATTAGGACAAATTTATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
75223981 CTTAG
66 CTTAG
75223986 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
1 CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
75224051 TTATGTGCTA
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 61 1.00
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.36
Consensus pattern (70 bp):
CTAATTAATATGCTGCTGTAATACTGTAAATTATTGGCTGTCCAAATTAGGACAAAATCATGGTG
CTTAG
Found at i:75224882 original size:43 final size:43
Alignment explanation
Indices: 75224823--75224993 Score: 211
Period size: 43 Copynumber: 4.0 Consensus size: 43
75224813 TATCGAAATG
* * * *
75224823 TGATATACGGGCTTCGGGCCTAGCAGGCTATGATGTCGATGAAA
1 TGATAT-CGGCCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* *
75224867 TGATATCAGCCTTCGGGCCTAGCAGGCTATAATGCCGGTGAGA
1 TGATATCGGCCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
*
75224910 TAATATCGGGCC-TCGGGCCTAGCAGGCTATAATGCCGGTGAAA
1 TGATATC-GGCCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
* ** *
75224953 TGATATCGGGCTTCAAGCCTAGCAGGCGA-AATGCCGGTGAA
1 TGATATCGGCCTTCGGGCCTAGCAGGCTATAATGCCGGTGAA
75224994 TGAATTCAGA
Statistics
Matches: 111, Mismatches: 14, Indels: 6
0.85 0.11 0.05
Matches are distributed among these distances:
42 15 0.14
43 87 0.78
44 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (43 bp):
TGATATCGGCCTTCGGGCCTAGCAGGCTATAATGCCGGTGAAA
Found at i:75224975 original size:86 final size:86
Alignment explanation
Indices: 75224825--75224992 Score: 239
Period size: 86 Copynumber: 2.0 Consensus size: 86
75224815 TCGAAATGTG
* * * **
75224825 ATATACGGGCTTCGGGCCTAGCAGGCTATGATGTCGATGAAATGATATCAGCCTTCGGGCCTAGC
1 ATATACGGGCCTCGGGCCTAGCAGGCTATAATGCCGATGAAATGATATCAGCCTTCAAGCCTAGC
*
75224890 AGGCTATAATGCCGGTGAGATA
66 AGGCGA-AATGCCGGTGAGATA
* * *
75224912 ATAT-CGGGCCTCGGGCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAAGCCTAGC
1 ATATACGGGCCTCGGGCCTAGCAGGCTATAATGCCGATGAAATGATATCAGCCTTCAAGCCTAGC
75224976 AGGCGAAATGCCGGTGA
66 AGGCGAAATGCCGGTGA
75224993 ATGAATTCAG
Statistics
Matches: 72, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 11 0.15
86 57 0.79
87 4 0.06
ACGTcount: A:0.25, C:0.22, G:0.31, T:0.22
Consensus pattern (86 bp):
ATATACGGGCCTCGGGCCTAGCAGGCTATAATGCCGATGAAATGATATCAGCCTTCAAGCCTAGC
AGGCGAAATGCCGGTGAGATA
Found at i:75225017 original size:42 final size:43
Alignment explanation
Indices: 75224840--75225021 Score: 127
Period size: 43 Copynumber: 4.3 Consensus size: 43
75224830 CGGGCTTCGG
* * * * * ***
75224840 GCCTAGCAGGCTATGATGTCGATGAAATGATATCAGCCTTCGG
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
* * * * * * ***
75224883 GCCTAGCAGGCTATAATGCCGGTGAGATAATATCGGGCCTCGG
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
* * * *
75224926 GCCTAGCAGGCTATAATGCCGGTGAAATGATATCGGGCTTCAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
75224969 GCCTAGCAGGCGA-AATGCCGGTG-AATGA-ATTCAGACTTAAA
1 GCCTAGCAGGCGATAATGCCGGTGAAATGATA-TCAGACTTAAA
*
75225010 GGTCTAGCAGGC
1 -GCCTAGCAGGC
75225022 TTATGGCCGG
Statistics
Matches: 119, Mismatches: 18, Indels: 5
0.84 0.13 0.04
Matches are distributed among these distances:
40 1 0.01
41 13 0.11
42 20 0.17
43 85 0.71
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (43 bp):
GCCTAGCAGGCGATAATGCCGGTGAAATGATATCAGACTTAAA
Found at i:75228828 original size:43 final size:43
Alignment explanation
Indices: 75228729--75228852 Score: 146
Period size: 43 Copynumber: 2.9 Consensus size: 43
75228719 GTTACCGAGA
* *
75228729 TGCGATTACATGTAAGACTATGTCTGGGACATTGGCATTGTAT
1 TGCGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
* *
75228772 TGTGATTACGTGTAAGACCATGTCTGGGACATTGGCGTTGTTAT
1 TGCGATTACGTGTAAGACCATGTCTGGGACATTGGCATTG-TAT
* *
75228816 T-CGATTTA-GTGTAAGA-CATTGTCTGGGATAGTGGCAT
1 TGCGA-TTACGTGTAAGACCA-TGTCTGGGACATTGGCAT
75228853 CGATATATGA
Statistics
Matches: 70, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
42 2 0.03
43 61 0.87
44 7 0.10
ACGTcount: A:0.23, C:0.13, G:0.28, T:0.35
Consensus pattern (43 bp):
TGCGATTACGTGTAAGACCATGTCTGGGACATTGGCATTGTAT
Found at i:75231306 original size:27 final size:27
Alignment explanation
Indices: 75231275--75231452 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75231265 TAAATTGTAC
75231275 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75231302 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75231328 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75231356 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75231384 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75231411 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75231438 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75231453 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75231389 original size:82 final size:81
Alignment explanation
Indices: 75231276--75231431 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75231266 AAATTGTACA
* *
75231276 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75231340 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75231357 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75231422 TGCGAGTTGA
65 TGCGAATTGA
75231432 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75231443 original size:82 final size:81
Alignment explanation
Indices: 75231272--75231452 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75231262 GATTAAATTG
* *
75231272 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75231337 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75231353 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75231417 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75231435 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75231453 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75233438 original size:23 final size:23
Alignment explanation
Indices: 75233410--75233493 Score: 132
Period size: 23 Copynumber: 3.7 Consensus size: 23
75233400 AACATAAACA
*
75233410 AATCAACACAATTTCCAGCAGAC
1 AATCAAAACAATTTCCAGCAGAC
*
75233433 AATCAAAACAATTTCCAGCAGCC
1 AATCAAAACAATTTCCAGCAGAC
* *
75233456 AATCATACCAATTTCCAGCAGAC
1 AATCAAAACAATTTCCAGCAGAC
75233479 AATCAAAACAATTTC
1 AATCAAAACAATTTC
75233494 AGAACAAATC
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 54 1.00
ACGTcount: A:0.44, C:0.29, G:0.07, T:0.20
Consensus pattern (23 bp):
AATCAAAACAATTTCCAGCAGAC
Found at i:75233521 original size:22 final size:21
Alignment explanation
Indices: 75233479--75233524 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
75233469 TCCAGCAGAC
* *
75233479 AATCAAAACAATTTCAGAACA
1 AATCAAAACAATATCAAAACA
*
75233500 AATCAAGACCAATATCAAAACA
1 AATCAA-AACAATATCAAAACA
75233522 AAT
1 AAT
75233525 GCAACAATTT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 6 0.29
22 15 0.71
ACGTcount: A:0.59, C:0.20, G:0.04, T:0.17
Consensus pattern (21 bp):
AATCAAAACAATATCAAAACA
Found at i:75235404 original size:5 final size:5
Alignment explanation
Indices: 75235394--75235419 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
75235384 AAAGAGAGTT
75235394 AGAAA AGAAA AGAAA AGAAA AGAAA A
1 AGAAA AGAAA AGAAA AGAAA AGAAA A
75235420 AAGAGAGTTG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (5 bp):
AGAAA
Found at i:75240104 original size:13 final size:14
Alignment explanation
Indices: 75240068--75240106 Score: 53
Period size: 13 Copynumber: 2.7 Consensus size: 14
75240058 CCTTCCTATC
75240068 AGTTTTGGGAATTAT
1 AGTTTTGGG-ATTAT
75240083 AGATTTTGGGATTA-
1 AG-TTTTGGGATTAT
75240097 AGTTTTGGGA
1 AGTTTTGGGA
75240107 GGTTAGTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
13 8 0.35
14 2 0.09
15 6 0.26
16 7 0.30
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.44
Consensus pattern (14 bp):
AGTTTTGGGATTAT
Found at i:75244761 original size:16 final size:17
Alignment explanation
Indices: 75244740--75244774 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
75244730 TTCGTTTTTA
*
75244740 TGATATAT-ATTTAATT
1 TGATATATGAATTAATT
75244756 TGATATATGAATTAATT
1 TGATATATGAATTAATT
75244773 TG
1 TG
75244775 TTTATTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 8 0.47
17 9 0.53
ACGTcount: A:0.37, C:0.00, G:0.11, T:0.51
Consensus pattern (17 bp):
TGATATATGAATTAATT
Found at i:75246599 original size:57 final size:59
Alignment explanation
Indices: 75246528--75246668 Score: 155
Period size: 57 Copynumber: 2.4 Consensus size: 59
75246518 TATCGTATTA
* * *
75246528 CAGGATTACTAGTCCAGGCTAAATCCATTA-TGTAACGTATACTCAGA-AGAGATCA-AT
1 CAGGATTACCAGTCCAGGCTAAATCCATAATTGTAACATATACT-AGAGAGAGATCATAT
* * * * * *
75246585 TAGGATTACCAGTCCAGGCTAAA-CCCTAATTGTAACATATGCTTGAGAGGGATTATAT
1 CAGGATTACCAGTCCAGGCTAAATCCATAATTGTAACATATACTAGAGAGAGATCATAT
*
75246643 CAGGATTACCCGTCCAGGCTAAATCC
1 CAGGATTACCAGTCCAGGCTAAATCC
75246669 TTTCCATAAT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
56 6 0.09
57 38 0.55
58 23 0.33
59 2 0.03
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.26
Consensus pattern (59 bp):
CAGGATTACCAGTCCAGGCTAAATCCATAATTGTAACATATACTAGAGAGAGATCATAT
Found at i:75249390 original size:37 final size:37
Alignment explanation
Indices: 75249349--75249554 Score: 412
Period size: 37 Copynumber: 5.6 Consensus size: 37
75249339 ATATGAAGTT
75249349 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
75249386 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
75249423 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
75249460 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
75249497 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
1 ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
75249534 ATCGGGTCTTACCCGGACATA
1 ATCGGGTCTTACCCGGACATA
75249555 TTTCCAAGTT
Statistics
Matches: 169, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
37 169 1.00
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
ATCGGGTCTTACCCGGACATAATCTCCACACGTAGTC
Found at i:75249820 original size:47 final size:47
Alignment explanation
Indices: 75249758--75250939 Score: 2112
Period size: 47 Copynumber: 25.1 Consensus size: 47
75249748 ACACGTTTCG
* * * *
75249758 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75249805 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
* * * *
75249852 CATTGGCCATTCGGCCTTATCACACAAACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75249899 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75249946 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75249993 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250040 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250087 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250134 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250181 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250228 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250275 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250322 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250369 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250416 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250463 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250510 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250557 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250604 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250651 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250698 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
* * *
75250745 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
* * **
75250792 CATTGGCCATTCGGCCTTATCACACATATATATACGGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTAT--CTC--ATATATGCATGTTCACATTCATCA
* * * *
75250843 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
* * * * *
75250890 CAGTGGCCATTCGGCCTTATCACACATACGCATGTTCACATCCATCA
1 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
75250937 CAT
1 CAT
75250940 AAAATCCTAA
Statistics
Matches: 1103, Mismatches: 28, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
47 1058 0.96
49 6 0.01
51 39 0.04
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.35
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
Found at i:75257033 original size:46 final size:46
Alignment explanation
Indices: 75256980--75257155 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
75256970 TGGTTGAGCA
75256980 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75257026 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75257071 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75257119 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75257156 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75257136 original size:93 final size:93
Alignment explanation
Indices: 75256977--75257148 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
75256967 GAATGGTTGA
* * *
75256977 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
75257042 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75257070 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
75257135 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75257149 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75259656 original size:55 final size:55
Alignment explanation
Indices: 75259567--75259677 Score: 204
Period size: 55 Copynumber: 2.0 Consensus size: 55
75259557 CGGCAGCCAG
* *
75259567 TGTAGGGCACTCGAGATTTGTTAAACCTGTGTGCCAGCGGTGTGGTAGAAATCAT
1 TGTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAGCGGTGTGGTAGAAATCAT
75259622 TGTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAGCGGTGTGGTAGAAATCAT
1 TGTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAGCGGTGTGGTAGAAATCAT
75259677 T
1 T
75259678 TTGGTCCGTG
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.25, C:0.15, G:0.31, T:0.29
Consensus pattern (55 bp):
TGTAGGGAACTCGAGATTTGTTAAACCTGAGTGCCAGCGGTGTGGTAGAAATCAT
Found at i:75264655 original size:46 final size:46
Alignment explanation
Indices: 75264605--75264780 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
75264595 TGGTTGAGCA
75264605 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
75264651 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
75264696 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
75264744 CCCGAGCTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
75264781 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 62 0.56
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:75264761 original size:93 final size:93
Alignment explanation
Indices: 75264602--75264773 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
75264592 GGATGGTTGA
* * *
75264602 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
75264667 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
75264695 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
75264760 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
75264774 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:75268456 original size:2 final size:2
Alignment explanation
Indices: 75268449--75268491 Score: 52
Period size: 2 Copynumber: 22.0 Consensus size: 2
75268439 CTATAAAATA
* * *
75268449 AT AT AT AT AT GT AT AT AT AT AC AT AT AT AT AT GT AT AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
75268490 AT
1 AT
75268492 CATCCCAATG
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
1 1 0.03
2 33 0.97
ACGTcount: A:0.47, C:0.02, G:0.05, T:0.47
Consensus pattern (2 bp):
AT
Found at i:75273205 original size:42 final size:42
Alignment explanation
Indices: 75273142--75273229 Score: 167
Period size: 42 Copynumber: 2.1 Consensus size: 42
75273132 CATCAACTCA
*
75273142 AATTCCCCCCCCCCCCTGTTTTTGTAAAACTAGTACTTGAGT
1 AATTCCCCCCCCCCCCCGTTTTTGTAAAACTAGTACTTGAGT
75273184 AATTCCCCCCCCCCCCCGTTTTTGTAAAACTAGTACTTGAGT
1 AATTCCCCCCCCCCCCCGTTTTTGTAAAACTAGTACTTGAGT
75273226 AATT
1 AATT
75273230 ATGTTTTTTA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 45 1.00
ACGTcount: A:0.23, C:0.33, G:0.11, T:0.33
Consensus pattern (42 bp):
AATTCCCCCCCCCCCCCGTTTTTGTAAAACTAGTACTTGAGT
Found at i:75282481 original size:29 final size:30
Alignment explanation
Indices: 75282418--75282497 Score: 108
Period size: 31 Copynumber: 2.6 Consensus size: 30
75282408 ATCCGAAAAC
*
75282418 TATACATGAACTTTGGTTTAATGTGCAATTG
1 TATACATGAACTTTGATTT-ATGTGCAATTG
*
75282449 TATACATGAACTTTGATTT-TGTGCAATTT
1 TATACATGAACTTTGATTTATGTGCAATTG
*
75282478 TATACATGAAATTTTGATTT
1 TATACATG-AACTTTGATTT
75282498 GATTCAATTC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
29 17 0.38
30 10 0.22
31 18 0.40
ACGTcount: A:0.30, C:0.09, G:0.15, T:0.46
Consensus pattern (30 bp):
TATACATGAACTTTGATTTATGTGCAATTG
Found at i:75287535 original size:33 final size:33
Alignment explanation
Indices: 75287493--75287560 Score: 118
Period size: 33 Copynumber: 2.1 Consensus size: 33
75287483 AAGGTCTGAG
*
75287493 TGAGAGTGTTTGATTGCTGGACAGGAGCTGGAA
1 TGAGAGTGTTTGATTGCTGGACAAGAGCTGGAA
*
75287526 TGAGAGTGTTTGGTTGCTGGACAAGAGCTGGAA
1 TGAGAGTGTTTGATTGCTGGACAAGAGCTGGAA
75287559 TG
1 TG
75287561 TCAAGAAGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.24, C:0.09, G:0.40, T:0.28
Consensus pattern (33 bp):
TGAGAGTGTTTGATTGCTGGACAAGAGCTGGAA
Found at i:75301326 original size:43 final size:44
Alignment explanation
Indices: 75301266--75301351 Score: 120
Period size: 44 Copynumber: 2.0 Consensus size: 44
75301256 ATATTTTATG
* * *
75301266 TTATCTTTTAGTAGTTTATT-AGAATAAGGGAACTATTTTCCCC
1 TTATCTTTTAATAGTTTATTAAGAATAAAGAAACTATTTTCCCC
* *
75301309 TTATGTTTTAATAGTTTATTAAGAATAAAGAAATTATTTTCCC
1 TTATCTTTTAATAGTTTATTAAGAATAAAGAAACTATTTTCCC
75301352 AATTAGGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
43 18 0.49
44 19 0.51
ACGTcount: A:0.33, C:0.10, G:0.12, T:0.45
Consensus pattern (44 bp):
TTATCTTTTAATAGTTTATTAAGAATAAAGAAACTATTTTCCCC
Found at i:75315065 original size:27 final size:27
Alignment explanation
Indices: 75315035--75315091 Score: 114
Period size: 27 Copynumber: 2.1 Consensus size: 27
75315025 TCATGTATAT
75315035 ATAGTTGTATGTATTTCTAAGAAATAC
1 ATAGTTGTATGTATTTCTAAGAAATAC
75315062 ATAGTTGTATGTATTTCTAAGAAATAC
1 ATAGTTGTATGTATTTCTAAGAAATAC
75315089 ATA
1 ATA
75315092 CTTTGAGAGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 30 1.00
ACGTcount: A:0.39, C:0.07, G:0.14, T:0.40
Consensus pattern (27 bp):
ATAGTTGTATGTATTTCTAAGAAATAC
Found at i:75322839 original size:23 final size:23
Alignment explanation
Indices: 75322811--75322856 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
75322801 GACTTGGTCC
75322811 AGGTTGAGGTAATCCAAAACTAT
1 AGGTTGAGGTAATCCAAAACTAT
*
75322834 AGGTTGAGGTAATCCAAGACTAT
1 AGGTTGAGGTAATCCAAAACTAT
75322857 CTTTAATTTA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (23 bp):
AGGTTGAGGTAATCCAAAACTAT
Found at i:75323406 original size:14 final size:15
Alignment explanation
Indices: 75323373--75323405 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
75323363 TTTTTCAAAG
75323373 AAAAGTGGTAGTTTA
1 AAAAGTGGTAGTTTA
75323388 AAAAGTGGTAGTTTA
1 AAAAGTGGTAGTTTA
75323403 AAA
1 AAA
75323406 GACGTATGAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.30
Consensus pattern (15 bp):
AAAAGTGGTAGTTTA
Found at i:75334516 original size:16 final size:16
Alignment explanation
Indices: 75334495--75334562 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
75334485 TTTGGTTCGC
75334495 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
75334511 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
75334527 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
*
75334543 TGTATTGAATTAGAGG
1 TGTATTGGATTAGAGG
75334559 TGTA
1 TGTA
75334563 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.29, C:0.00, G:0.35, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:75334846 original size:18 final size:17
Alignment explanation
Indices: 75334811--75334854 Score: 56
Period size: 17 Copynumber: 2.6 Consensus size: 17
75334801 ATTTTTTTGT
75334811 AATATATAATTTGATAA
1 AATATATAATTTGATAA
75334828 AATATATGAATTT-ATTAA
1 AATATAT-AATTTGA-TAA
75334846 AAT-TATAAT
1 AATATATAAT
75334855 ATATAATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
16 3 0.12
17 11 0.44
18 11 0.44
ACGTcount: A:0.52, C:0.00, G:0.05, T:0.43
Consensus pattern (17 bp):
AATATATAATTTGATAA
Found at i:75334858 original size:24 final size:22
Alignment explanation
Indices: 75334828--75334876 Score: 64
Period size: 24 Copynumber: 2.1 Consensus size: 22
75334818 AATTTGATAA
75334828 AATATATGAAT-TTATTAAAATTAT
1 AATATAT-AATATTA-TAAAA-TAT
75334852 AATATATAATATTATAAAATAT
1 AATATATAATATTATAAAATAT
75334874 AAT
1 AAT
75334877 TTAAAATAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
22 6 0.25
23 8 0.33
24 10 0.42
ACGTcount: A:0.55, C:0.00, G:0.02, T:0.43
Consensus pattern (22 bp):
AATATATAATATTATAAAATAT
Found at i:75334867 original size:15 final size:15
Alignment explanation
Indices: 75334847--75334902 Score: 57
Period size: 15 Copynumber: 4.0 Consensus size: 15
75334837 ATTTATTAAA
*
75334847 ATTATAATATATAAT
1 ATTATAAAATATAAT
75334862 ATTATAAAATAT-A-
1 ATTATAAAATATAAT
*
75334875 ATT-TAAAATA-ATT
1 ATTATAAAATATAAT
*
75334888 ATTATTAAATATAAT
1 ATTATAAAATATAAT
75334903 CATTTTTATA
Statistics
Matches: 33, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
12 7 0.21
13 6 0.18
14 7 0.21
15 13 0.39
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (15 bp):
ATTATAAAATATAAT
Found at i:75338980 original size:47 final size:47
Alignment explanation
Indices: 75338928--75339047 Score: 195
Period size: 47 Copynumber: 2.6 Consensus size: 47
75338918 GATAATTGTG
* *
75338928 ATGTGAATGTATATATATGTGATAAGACCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGA
* *
75338975 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGG
1 ATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGA
*
75339022 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
75339048 TCCCGAAGGG
Statistics
Matches: 68, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGACCTAATGGCCGATGTGATGA
Found at i:75339222 original size:37 final size:37
Alignment explanation
Indices: 75339166--75339244 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
75339156 CCGAGCTCTA
* * *
75339166 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
75339203 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
75339240 AAGAC
1 AAGAC
75339245 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:75341243 original size:103 final size:104
Alignment explanation
Indices: 75340913--75341326 Score: 697
Period size: 103 Copynumber: 4.0 Consensus size: 104
75340903 TTCTCACCTG
* * * *
75340913 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGACGGGTTTTTTTTTTTTTAGTAAAGAGGCTT
1 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGAAGGG-TGTTTATTTTTAAGTAAAGAGGCTT
75340978 TCAAAATTTTGTATTGAATTCTCATTATTAGGAAAAATCT
65 TCAAAATTTTGTATTGAATTCTCATTATTAGGAAAAATCT
* * * *
75341018 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGACGGGTTTTTTTTTTTTTAGTAAAGAGGCTT
1 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGAAGGG-TGTTTATTTTTAAGTAAAGAGGCTT
75341083 TCAAAATTTTGTATTGAATTCTCATTATTAGGAAAAATCT
65 TCAAAATTTTGTATTGAATTCTCATTATTAGGAAAAATCT
*
75341123 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGAAGGG-GTTTATTTTTAAGTAAGGAGGCTTT
1 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGAAGGGTGTTTATTTTTAAGTAAAGAGGCTTT
75341187 CAAAATTTTGTATTGAATTCTCATTATTAGGAAAAATCT
66 CAAAATTTTGTATTGAATTCTCATTATTAGGAAAAATCT
*
75341226 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGAAGGG-GTTTATTTTTAAGTAAGGAGGCTTT
1 CAAATTAAAAATGGAAAAATAAAGGATTTCATGGAAGGGTGTTTATTTTTAAGTAAAGAGGCTTT
*
75341290 CAAAATTTTGTATTGAAATCTCATTATTAGGAAAAAT
66 CAAAATTTTGTATTGAATTCTCATTATTAGGAAAAAT
75341327 TTTGGAATTT
Statistics
Matches: 303, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
103 160 0.53
105 143 0.47
ACGTcount: A:0.39, C:0.07, G:0.17, T:0.37
Consensus pattern (104 bp):
CAAATTAAAAATGGAAAAATAAAGGATTTCATGGAAGGGTGTTTATTTTTAAGTAAAGAGGCTTT
CAAAATTTTGTATTGAATTCTCATTATTAGGAAAAATCT
Found at i:75344372 original size:29 final size:30
Alignment explanation
Indices: 75344315--75344378 Score: 112
Period size: 29 Copynumber: 2.1 Consensus size: 30
75344305 TGTATTGGGT
75344315 CTAATTAAACGTGTTTTTTTGAAATTTTAAC
1 CTAATTAAACGTG-TTTTTTGAAATTTTAAC
75344346 CTAATTAAACGTG-TTTTTGAAATTTTAAC
1 CTAATTAAACGTGTTTTTTGAAATTTTAAC
75344375 CTAA
1 CTAA
75344379 CACGTTATAA
Statistics
Matches: 33, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
29 20 0.61
31 13 0.39
ACGTcount: A:0.34, C:0.11, G:0.09, T:0.45
Consensus pattern (30 bp):
CTAATTAAACGTGTTTTTTGAAATTTTAAC
Found at i:75350377 original size:10 final size:9
Alignment explanation
Indices: 75350353--75350378 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
75350343 TTCAAGAATC
75350353 TCAAAAACA
1 TCAAAAACA
75350362 TCAAAAACA
1 TCAAAAACA
75350371 TCAAAAAC
1 TCAAAAAC
75350379 CAACACCAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.23, G:0.00, T:0.12
Consensus pattern (9 bp):
TCAAAAACA
Found at i:75351464 original size:26 final size:26
Alignment explanation
Indices: 75351434--75351514 Score: 144
Period size: 26 Copynumber: 3.1 Consensus size: 26
75351424 AATTTAGTCC
75351434 CTATTACTCAAAATTTATAATTTGTT
1 CTATTACTCAAAATTTATAATTTGTT
* *
75351460 CTATTATTCAATATTTATAATTTGTT
1 CTATTACTCAAAATTTATAATTTGTT
75351486 CTATTACTCAAAATTTATAATTTGTT
1 CTATTACTCAAAATTTATAATTTGTT
75351512 CTA
1 CTA
75351515 CAATTTAATC
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 51 1.00
ACGTcount: A:0.33, C:0.11, G:0.04, T:0.52
Consensus pattern (26 bp):
CTATTACTCAAAATTTATAATTTGTT
Found at i:75351773 original size:14 final size:14
Alignment explanation
Indices: 75351748--75351786 Score: 62
Period size: 14 Copynumber: 2.9 Consensus size: 14
75351738 GTTGAACCTT
75351748 CTTTTC-TTCTTTC
1 CTTTTCTTTCTTTC
*
75351761 TTTTTCTTTCTTTC
1 CTTTTCTTTCTTTC
75351775 CTTTTCTTTCTT
1 CTTTTCTTTCTT
75351787 AGTTTTGTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
13 5 0.22
14 18 0.78
ACGTcount: A:0.00, C:0.26, G:0.00, T:0.74
Consensus pattern (14 bp):
CTTTTCTTTCTTTC
Found at i:75356341 original size:18 final size:18
Alignment explanation
Indices: 75356315--75356409 Score: 79
Period size: 18 Copynumber: 5.3 Consensus size: 18
75356305 AATTGATCGG
* *
75356315 TTATCCAGTAACAGTCAA
1 TTATTCAGTAACAATCAA
75356333 TTATTCAGTAA-AATCAGA
1 TTATTCAGTAACAATCA-A
*
75356351 -TATTCAGTAACAATTAA
1 TTATTCAGTAACAATCAA
* *
75356368 GTTATTTAGTAACAGTC-A
1 -TTATTCAGTAACAATCAA
* *
75356386 TTCATTCAGTGACAATCAG
1 TT-ATTCAGTAACAATCAA
75356405 TTATT
1 TTATT
75356410 TTATACCTTT
Statistics
Matches: 61, Mismatches: 10, Indels: 12
0.73 0.12 0.14
Matches are distributed among these distances:
17 17 0.28
18 30 0.49
19 14 0.23
ACGTcount: A:0.38, C:0.15, G:0.12, T:0.36
Consensus pattern (18 bp):
TTATTCAGTAACAATCAA
Found at i:75356642 original size:45 final size:45
Alignment explanation
Indices: 75356583--75356731 Score: 237
Period size: 45 Copynumber: 3.3 Consensus size: 45
75356573 AACAGTAACA
* *
75356583 GTAACAGT-ATAGTAACAATATCCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
75356627 GTAACGGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
* *
75356672 GTAATAGTAACAGTAACAATATTCGACACACAAAGTGCAGAATCG
1 GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
*
75356717 GTAACAGTAGCAGTA
1 GTAACAGTAACAGTA
75356732 GCGGTAACAG
Statistics
Matches: 96, Mismatches: 8, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
44 7 0.07
45 89 0.93
ACGTcount: A:0.42, C:0.20, G:0.19, T:0.19
Consensus pattern (45 bp):
GTAACAGTAACAGTAACAATATTCGACACACAAAGTGCCGAATCG
Found at i:75358285 original size:5 final size:5
Alignment explanation
Indices: 75358277--75358326 Score: 93
Period size: 5 Copynumber: 10.2 Consensus size: 5
75358267 TTTAGTTTAT
75358277 ATATA ATATA ATATA ATATA ATATA ATA-A ATATA ATATA ATATA ATATA
1 ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA ATATA
75358326 A
1 A
75358327 AACATAAAGT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
4 4 0.09
5 40 0.91
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (5 bp):
ATATA
Found at i:75358308 original size:24 final size:25
Alignment explanation
Indices: 75358282--75358369 Score: 92
Period size: 24 Copynumber: 3.5 Consensus size: 25
75358272 TTTATATATA
75358282 ATATAATATAATATAATATAATAA-
1 ATATAATATAATATAATATAATAAC
75358306 ATATAATATAATATAATATAA-AAC
1 ATATAATATAATATAATATAATAAC
** * *
75358330 ATA-AAGTATCTTTATTATATAATAAT
1 ATATAA-TAT-AATATAATATAATAAC
75358356 ATAATAATATAATA
1 AT-ATAATATAATA
75358370 ATATACTAAA
Statistics
Matches: 52, Mismatches: 6, Indels: 10
0.76 0.09 0.15
Matches are distributed among these distances:
23 4 0.08
24 27 0.52
25 9 0.17
26 6 0.12
27 4 0.08
28 2 0.04
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.39
Consensus pattern (25 bp):
ATATAATATAATATAATATAATAAC
Found at i:75358359 original size:8 final size:8
Alignment explanation
Indices: 75358346--75358374 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
75358336 TATCTTTATT
75358346 ATATAATA
1 ATATAATA
75358354 ATATAATA
1 ATATAATA
75358362 ATATAATA
1 ATATAATA
75358370 ATATA
1 ATATA
75358375 CTAAACATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:75358372 original size:19 final size:19
Alignment explanation
Indices: 75358284--75358372 Score: 64
Period size: 19 Copynumber: 4.7 Consensus size: 19
75358274 TATATATAAT
75358284 ATAATATAAT-ATAATATA
1 ATAATATAATAATAATATA
75358302 ATAAATATAAT-ATAATATA
1 AT-AATATAATAATAATATA
*
75358321 AT-ATA-AA-ACATAAAGTATC
1 ATAATATAATA-AT-AA-TATA
* *
75358340 TTTAT-TATATAATAATATA
1 ATAATATA-ATAATAATATA
75358359 ATAATATAATAATA
1 ATAATATAATAATA
75358373 TACTAAACAT
Statistics
Matches: 56, Mismatches: 5, Indels: 19
0.70 0.06 0.24
Matches are distributed among these distances:
16 2 0.04
17 5 0.09
18 4 0.07
19 34 0.61
20 7 0.12
21 3 0.05
22 1 0.02
ACGTcount: A:0.58, C:0.02, G:0.01, T:0.38
Consensus pattern (19 bp):
ATAATATAATAATAATATA
Found at i:75362413 original size:50 final size:51
Alignment explanation
Indices: 75362344--75362473 Score: 163
Period size: 52 Copynumber: 2.5 Consensus size: 51
75362334 ATAGGGTACG
* **
75362344 CATAGTAGCCTGCACTTAGTACTACACATGCGACCT-AACCATCTGGTACA
1 CATAGTAGCCTGTACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
* * * * *
75362394 CGTAGTAGCTTGTACTTAGTACTACACATGTGACCTAAAACCATTTTAAACA
1 CATAGTAGCCTGTACTTAGTACTACACATGCGACCT-AAACCATCTGAAACA
*
75362446 CATAGTAGCCTGTACATAGTACTACACA
1 CATAGTAGCCTGTACTTAGTACTACACA
75362474 AGTGTTCTCA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
50 32 0.48
52 35 0.52
ACGTcount: A:0.33, C:0.25, G:0.15, T:0.27
Consensus pattern (51 bp):
CATAGTAGCCTGTACTTAGTACTACACATGCGACCTAAACCATCTGAAACA
Found at i:75371435 original size:54 final size:55
Alignment explanation
Indices: 75371363--75371469 Score: 189
Period size: 55 Copynumber: 2.0 Consensus size: 55
75371353 TTCGTTAAAG
*
75371363 ATTTATAATATTTTAATGAA-TTTCATGAAAATTGCCATAAACATGTTAAAAAAA
1 ATTTATAATATTTTAATGAATTTTCATGAAAATCGCCATAAACATGTTAAAAAAA
*
75371417 ATTTATAATATTTTAATGAATTTTCATGAAAATCGCCATAAACATGTTGAAAA
1 ATTTATAATATTTTAATGAATTTTCATGAAAATCGCCATAAACATGTTAAAAA
75371470 TTTTGATACC
Statistics
Matches: 50, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
54 20 0.40
55 30 0.60
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.37
Consensus pattern (55 bp):
ATTTATAATATTTTAATGAATTTTCATGAAAATCGCCATAAACATGTTAAAAAAA
Found at i:75391716 original size:21 final size:21
Alignment explanation
Indices: 75391690--75391736 Score: 94
Period size: 21 Copynumber: 2.2 Consensus size: 21
75391680 AATAAACGAT
75391690 GTTGGAAAGCTTTTAGGTATA
1 GTTGGAAAGCTTTTAGGTATA
75391711 GTTGGAAAGCTTTTAGGTATA
1 GTTGGAAAGCTTTTAGGTATA
75391732 GTTGG
1 GTTGG
75391737 CATGCCATAG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.26, C:0.04, G:0.32, T:0.38
Consensus pattern (21 bp):
GTTGGAAAGCTTTTAGGTATA
Found at i:75398162 original size:171 final size:170
Alignment explanation
Indices: 75397853--75398173 Score: 396
Period size: 171 Copynumber: 1.9 Consensus size: 170
75397843 AACAATTCAT
*
75397853 AAACAAATTAGAAATGCATTAACTTGATCAAATTACTAAAATTTGCATCCTTATTGTGCCATCAT
1 AAACAAATTAGAAATGCATTAACTTGATCAAATTACTAAAATTTACATCCTTATTGTGCCATCAT
* * * *
75397918 CAAATCAACTTGACGATAAACACCAATCAACCAATAAACAACCGTCTAAAGTCCTAAGAGACTTA
66 CAAATCAACTTGACGATAAACACCAATCAACCAATAAACAACCGTCCAAAATCCCAAGAGACTCA
75397983 TCATATCAAATGATGCACAAAAGATCAAGTCTTAGATGCAA
131 TCATATC-AATGATGCACAAAAGATCAAGTCTTAGATGCAA
** * * * * *
75398024 AAACAAATTAGCGATGCATTAATTTGATCATATTA-TAGAAATTTATAT-TTTAGTTGTGCTATC
1 AAACAAATTAGAAATGCATTAACTTGATCAAATTACTA-AAATTTACATCCTTA-TTGTGCCATC
* * * ** * *
75398087 ATCAAATCAACTTGACGATGAATATCAATCAATTAATAAACAACTG-CCAAAATCCCCAAGAGGC
64 ATCAAATCAACTTGACGATAAACACCAATCAACCAATAAACAACCGTCCAAAAT-CCCAAGAGAC
* *
75398151 TCATTATATCAATGATGTACAAA
128 TCATCATATCAATGATGCACAAA
75398174 GGTAAAATCT
Statistics
Matches: 126, Mismatches: 21, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
170 22 0.17
171 104 0.83
ACGTcount: A:0.42, C:0.18, G:0.11, T:0.28
Consensus pattern (170 bp):
AAACAAATTAGAAATGCATTAACTTGATCAAATTACTAAAATTTACATCCTTATTGTGCCATCAT
CAAATCAACTTGACGATAAACACCAATCAACCAATAAACAACCGTCCAAAATCCCAAGAGACTCA
TCATATCAATGATGCACAAAAGATCAAGTCTTAGATGCAA
Found at i:75399013 original size:19 final size:20
Alignment explanation
Indices: 75398985--75399023 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
75398975 TCTTATTTTT
*
75398985 TATTTGTTTTT-TGTTTTAA
1 TATTTATTTTTATGTTTTAA
75399004 TATTTATTTTTATGTTTTAA
1 TATTTATTTTTATGTTTTAA
75399024 ATGTATTTGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.21, C:0.00, G:0.08, T:0.72
Consensus pattern (20 bp):
TATTTATTTTTATGTTTTAA
Found at i:75399030 original size:19 final size:19
Alignment explanation
Indices: 75398991--75399031 Score: 57
Period size: 19 Copynumber: 2.2 Consensus size: 19
75398981 TTTTTATTTG
*
75398991 TTTTTTGTTTTAATATTTA
1 TTTTTTGTTTTAATATGTA
75399010 TTTTTATGTTTTAA-ATGTA
1 TTTTT-TGTTTTAATATGTA
75399029 TTT
1 TTT
75399032 GATTTATTAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 12 0.60
20 8 0.40
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.71
Consensus pattern (19 bp):
TTTTTTGTTTTAATATGTA
Found at i:75399041 original size:25 final size:23
Alignment explanation
Indices: 75399004--75399049 Score: 65
Period size: 25 Copynumber: 1.9 Consensus size: 23
75398994 TTTGTTTTAA
*
75399004 TATTTATTTTTATGTTTTAAATG
1 TATTTATTTTTATATTTTAAATG
75399027 TATTTGATTTATTATATTTTAAA
1 TATTT-ATTT-TTATATTTTAAA
75399050 GTTTTTTATT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 4 0.20
25 11 0.55
ACGTcount: A:0.30, C:0.00, G:0.07, T:0.63
Consensus pattern (23 bp):
TATTTATTTTTATATTTTAAATG
Found at i:75399592 original size:15 final size:15
Alignment explanation
Indices: 75399574--75399603 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
75399564 AAATTTTAAT
75399574 TTTTTATAATTTATA
1 TTTTTATAATTTATA
75399589 TTTTTATAATTTATA
1 TTTTTATAATTTATA
75399604 GAGAATTAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (15 bp):
TTTTTATAATTTATA
Found at i:75400089 original size:23 final size:22
Alignment explanation
Indices: 75400063--75400106 Score: 52
Period size: 23 Copynumber: 2.0 Consensus size: 22
75400053 TAAAAAATAT
* *
75400063 AAAAAAATTAATTTAATATTTTA
1 AAAAAAATAAAATT-ATATTTTA
*
75400086 AAAATAATAAAATTATATTTT
1 AAAAAAATAAAATTATATTTT
75400107 TATATCATAA
Statistics
Matches: 18, Mismatches: 3, Indels: 1
0.82 0.14 0.05
Matches are distributed among these distances:
22 7 0.39
23 11 0.61
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (22 bp):
AAAAAAATAAAATTATATTTTA
Found at i:75404373 original size:13 final size:13
Alignment explanation
Indices: 75404355--75404380 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75404345 AAACAGGATA
75404355 GGGAAGCAATAAC
1 GGGAAGCAATAAC
75404368 GGGAAGCAATAAC
1 GGGAAGCAATAAC
75404381 AATTGTAGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.15, G:0.31, T:0.08
Consensus pattern (13 bp):
GGGAAGCAATAAC
Found at i:75408113 original size:16 final size:16
Alignment explanation
Indices: 75408092--75408126 Score: 70
Period size: 16 Copynumber: 2.2 Consensus size: 16
75408082 GGAGCAATCA
75408092 CGAGAATTGGAGAAAG
1 CGAGAATTGGAGAAAG
75408108 CGAGAATTGGAGAAAG
1 CGAGAATTGGAGAAAG
75408124 CGA
1 CGA
75408127 CCACGATCAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.43, C:0.09, G:0.37, T:0.11
Consensus pattern (16 bp):
CGAGAATTGGAGAAAG
Found at i:75409987 original size:16 final size:15
Alignment explanation
Indices: 75409963--75409992 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
75409953 AACTGTTTTA
75409963 TTACAAATTTCACTC
1 TTACAAATTTCACTC
75409978 TTACATAATTTCACT
1 TTACA-AATTTCACT
75409993 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:75410327 original size:50 final size:50
Alignment explanation
Indices: 75410192--75410481 Score: 269
Period size: 50 Copynumber: 5.8 Consensus size: 50
75410182 AACTGAAGCT
* * **** *
75410192 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACC-AACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
* *
75410241 ATC-CAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
1 ATCTGA-TACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
** * * * **
75410291 ATCTGATACATGTAGTAGCCTGTACTTAGTACTACACACGTGATCGAAGTT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CC
* * * * * * * *
75410342 GTCAGGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACCTAACT
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
*
75410392 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACC
* * * *
75410444 ATCTTAAACACATAGTAGCCTGCACATAGTGCTACACA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACA
75410482 TGTGTTCTCA
Statistics
Matches: 194, Mismatches: 41, Indels: 9
0.80 0.17 0.04
Matches are distributed among these distances:
49 36 0.19
50 85 0.44
51 37 0.19
52 36 0.19
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.25
Consensus pattern (50 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACC
Found at i:75410387 original size:101 final size:101
Alignment explanation
Indices: 75410253--75410434 Score: 292
Period size: 101 Copynumber: 1.8 Consensus size: 101
75410243 CCAGTACACG
* ** *
75410253 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACATGTAGTAGCCTGTACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACATAGTAGCCTGCACTT
75410318 AGTACTACACACGTGATCGAAGTTGTCAGGTACGCA
66 AGTACTACACACGTGATCGAAGTTGTCAGGTACGCA
* * * *
75410354 TAGTAGCCTGCACTTAGTATTACACATGCGACCTAACTATCTGGTACACATAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACATAGTAGCCTGCACTT
75410419 AGTACTACACACGTGA
66 AGTACTACACACGTGA
75410435 CCTAAAACCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACCATCTGATACACATAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTGTCAGGTACGCA
Found at i:75410436 original size:151 final size:151
Alignment explanation
Indices: 75410196--75410481 Score: 421
Period size: 151 Copynumber: 1.9 Consensus size: 151
75410186 GAAGCTATCT
*
75410196 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCAGTACACGTAGTAGCC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCAGTACACATAGTAGCC
* ** * *
75410261 TGCACTTAGTACTACACACGTGACCT-AACCATCTGATACATGTAGTAGCCTGTACTTAGTACTA
66 TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGCCTGCACATAGTACTA
75410325 CACACGTGATCGAAGTTGTCA
131 CACACGTGATCGAAGTTGTCA
* * * * **
75410346 GGTACGCATAGTAGCCTGCACTTAGTATTACACATGCGACCTAACTATCTGGTACACATAGTAGC
1 GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACC-AACAATCCAGTACACATAGTAGC
* *
75410411 CTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACATAGTAGCCTGCACATAGTGC
65 CTGCACTTAGTACTACACACGTGACCT-AAACCATCTGAAACACATAGTAGCCTGCACATAGTAC
75410476 TACACA
129 TACACA
75410482 TGTGTTCTCA
Statistics
Matches: 119, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
150 38 0.32
151 46 0.39
153 35 0.29
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (151 bp):
GGTACGCATAGTAGCCTGCACTTAGTACTACACATACAACCAACAATCCAGTACACATAGTAGCC
TGCACTTAGTACTACACACGTGACCTAAACCATCTGAAACACATAGTAGCCTGCACATAGTACTA
CACACGTGATCGAAGTTGTCA
Found at i:75413959 original size:45 final size:45
Alignment explanation
Indices: 75413909--75413996 Score: 149
Period size: 45 Copynumber: 2.0 Consensus size: 45
75413899 CCAAAACATG
*
75413909 TGCCACATACATCATGAACTCAGACCATAACTCAATAAGTTCAAA
1 TGCCACATACATCATGAACTCAGACCACAACTCAATAAGTTCAAA
* *
75413954 TGCCACATATATCATGAACTCAGACCACAACTCAATGAGTTCA
1 TGCCACATACATCATGAACTCAGACCACAACTCAATAAGTTCA
75413997 GATCACATAG
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 40 1.00
ACGTcount: A:0.40, C:0.27, G:0.10, T:0.23
Consensus pattern (45 bp):
TGCCACATACATCATGAACTCAGACCACAACTCAATAAGTTCAAA
Found at i:75415568 original size:3 final size:3
Alignment explanation
Indices: 75415553--75415601 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
75415543 GCTTCCTTTT
*
75415553 TTA TTA TT- CTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
75415600 TT
1 TT
75415602 TTTAGTTGGT
Statistics
Matches: 43, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
2 1 0.02
3 42 0.98
ACGTcount: A:0.31, C:0.02, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:75416199 original size:25 final size:25
Alignment explanation
Indices: 75416152--75416200 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
75416142 TACTTAAACC
*
75416152 TTTTAGATATAATAGTATGTATATT
1 TTTTAGATATAATAGTATATATATT
*
75416177 TTTTAGATTTATATA-TATATATAT
1 TTTTAGATATA-ATAGTATATATAT
75416201 GGTCATTAAT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 18 0.86
26 3 0.14
ACGTcount: A:0.37, C:0.00, G:0.08, T:0.55
Consensus pattern (25 bp):
TTTTAGATATAATAGTATATATATT
Found at i:75420170 original size:19 final size:20
Alignment explanation
Indices: 75420127--75420180 Score: 83
Period size: 19 Copynumber: 2.8 Consensus size: 20
75420117 ATATGTCAAG
75420127 ATGCACTTTGTGTGCCAAAT
1 ATGCACTTTGTGTGCCAAAT
*
75420147 ATGCACTTTGTGTGCC-AGT
1 ATGCACTTTGTGTGCCAAAT
*
75420166 ATGCACTTTATGTGC
1 ATGCACTTTGTGTGC
75420181 TAGTTTACCC
Statistics
Matches: 32, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
19 16 0.50
20 16 0.50
ACGTcount: A:0.20, C:0.20, G:0.22, T:0.37
Consensus pattern (20 bp):
ATGCACTTTGTGTGCCAAAT
Found at i:75431758 original size:28 final size:28
Alignment explanation
Indices: 75431727--75431808 Score: 137
Period size: 28 Copynumber: 2.9 Consensus size: 28
75431717 TCCCGTTCAA
*
75431727 TTTCAACATAATAAGTGCAGACACTTAT
1 TTTCAACATAATAAATGCAGACACTTAT
*
75431755 TTTCAACATAATAAATGCGGACACTTAT
1 TTTCAACATAATAAATGCAGACACTTAT
*
75431783 TTCCAACATAATAAATGCAGACACTT
1 TTTCAACATAATAAATGCAGACACTT
75431809 TATCAATCAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 50 1.00
ACGTcount: A:0.40, C:0.20, G:0.10, T:0.30
Consensus pattern (28 bp):
TTTCAACATAATAAATGCAGACACTTAT
Found at i:75434977 original size:55 final size:54
Alignment explanation
Indices: 75434888--75435090 Score: 166
Period size: 55 Copynumber: 3.8 Consensus size: 54
75434878 CTAAAGTGTC
* * * * *
75434888 ATATGTTAAA-TGTGGCTTTGTGGAGGTTCA-GGTGGACTGTACGGAGATTCTTAT
1 ATATGTTAAATTATGTCTTTGTAGAGGCT-AGGGTGGGCTGTACGGAGATT-TTAT
* * *
75434942 ATATGTTAAATTATTTCTTTGTAGAGGCTAGGGTGGGTTGTACTGAGATTTCTAT
1 ATATGTTAAATTATGTCTTTGTAGAGGCTAGGGTGGGCTGTACGGAGATTT-TAT
* * ** *
75434997 ATATGTT-AATTATGGT-TTTATATAGGCTTA-GGTGGGCTGTTTGGAGA-TTTCT
1 ATATGTTAAATTAT-GTCTTTGTAGAGGC-TAGGGTGGGCTGTACGGAGATTTTAT
* * * *
75435049 ATATGTTAAATTATGACTTTGTGGAGGCTTGGGTGGGTTGTA
1 ATATGTTAAATTATGTCTTTGTAGAGGCTAGGGTGGGCTGTA
75435091 TGAAGGTTTC
Statistics
Matches: 118, Mismatches: 23, Indels: 17
0.75 0.15 0.11
Matches are distributed among these distances:
52 11 0.09
53 25 0.21
54 40 0.34
55 42 0.36
ACGTcount: A:0.22, C:0.07, G:0.29, T:0.42
Consensus pattern (54 bp):
ATATGTTAAATTATGTCTTTGTAGAGGCTAGGGTGGGCTGTACGGAGATTTTAT
Found at i:75435032 original size:54 final size:55
Alignment explanation
Indices: 75434918--75435123 Score: 158
Period size: 55 Copynumber: 3.8 Consensus size: 55
75434908 TGGAGGTTCA
* * * *
75434918 GGTGGACTGTACGGAGA-TTCTTATATATGTTAAATTATTTCTTTGTAGAGGCTAG
1 GGTGGGCTGTACTGAGATTTC-TATATATGTTAAATTATGTCTTTATAGAGGCTAG
* *
75434973 GGTGGGTTGTACTGAGATTTCTATATATGTT-AATTATGGT-TTTATATAGGCTTA-
1 GGTGGGCTGTACTGAGATTTCTATATATGTTAAATTAT-GTCTTTATAGAGGC-TAG
* * * * *
75435027 GGTGGGCTGT-TTGGAGATTTC--TATATGTTAAATTATGACTTTGTGGAGGCTTG
1 GGTGGGCTGTACT-GAGATTTCTATATATGTTAAATTATGTCTTTATAGAGGCTAG
* * * * * *
75435080 GGTGGGTTGTA-TGAAGGTTTCTCTATGTATTAAACTATGTCTTT
1 GGTGGGCTGTACTG-AGATTTCTATATATGTTAAATTATGTCTTT
75435124 GCGGAGGTTT
Statistics
Matches: 121, Mismatches: 19, Indels: 22
0.75 0.12 0.14
Matches are distributed among these distances:
52 11 0.09
53 31 0.26
54 32 0.26
55 44 0.36
56 3 0.02
ACGTcount: A:0.22, C:0.08, G:0.27, T:0.43
Consensus pattern (55 bp):
GGTGGGCTGTACTGAGATTTCTATATATGTTAAATTATGTCTTTATAGAGGCTAG
Found at i:75435130 original size:55 final size:53
Alignment explanation
Indices: 75435020--75435130 Score: 123
Period size: 53 Copynumber: 2.1 Consensus size: 53
75435010 GGTTTTATAT
* * * *
75435020 AGGCTTAGGTGGGCTGTTTGGAGATTTCTATATGTTAAATTATGACTTTGTGG
1 AGGCTTAGGTGGGCTGTATGAAGATTTCTATATGTTAAACTATGACTTTGCGG
* * * * *
75435073 AGGCTTGGGTGGGTTGTATGAAGGTTTCTCTATGTATTAAACTATGTCTTTGCGG
1 AGGCTTAGGTGGGCTGTATGAAGATTTCTATATG--TTAAACTATGACTTTGCGG
75435128 AGG
1 AGG
75435131 TTTGAATGGT
Statistics
Matches: 47, Mismatches: 9, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 28 0.60
55 19 0.40
ACGTcount: A:0.20, C:0.09, G:0.32, T:0.40
Consensus pattern (53 bp):
AGGCTTAGGTGGGCTGTATGAAGATTTCTATATGTTAAACTATGACTTTGCGG
Found at i:75437342 original size:32 final size:30
Alignment explanation
Indices: 75437306--75437386 Score: 81
Period size: 32 Copynumber: 2.6 Consensus size: 30
75437296 TATATGATTC
*
75437306 TGCGACCTGTATCTATGAGAACTGTACAATTT
1 TGCGAACTGTATCTATGAG--CTGTACAATTT
* * *
75437338 TGCGAACTATATCTGTATGAGTTGTACGATTT
1 TGCGAACTGTATC--TATGAGCTGTACAATTT
*
75437370 TGTGAACTGTATCTATG
1 TGCGAACTGTATCTATG
75437387 CTAGTTGTAT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
30 4 0.10
32 31 0.76
34 6 0.15
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (30 bp):
TGCGAACTGTATCTATGAGCTGTACAATTT
Found at i:75443383 original size:34 final size:34
Alignment explanation
Indices: 75443317--75443383 Score: 98
Period size: 34 Copynumber: 2.0 Consensus size: 34
75443307 CCGGAAAATA
* *
75443317 TTAAGTTCTATTTGAATGATGAATTTTAATGGAG
1 TTAAGTTCCATTTGAATGATGAATTTCAATGGAG
* *
75443351 TTAAGTTCCGTTTGAATGATGAATTTCGATGGA
1 TTAAGTTCCATTTGAATGATGAATTTCAATGGA
75443384 TATATGTGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.30, C:0.06, G:0.22, T:0.42
Consensus pattern (34 bp):
TTAAGTTCCATTTGAATGATGAATTTCAATGGAG
Found at i:75444577 original size:23 final size:20
Alignment explanation
Indices: 75444551--75444608 Score: 55
Period size: 20 Copynumber: 2.8 Consensus size: 20
75444541 TTAGATGTCA
75444551 GAATTGACTTGGTTATAATGTTT
1 GAATTG-CTTGG-TAT-ATGTTT
*
75444574 GAATTGGTTGGTATATGTTT
1 GAATTGCTTGGTATATGTTT
*
75444594 GCAATT-ATTGGTATA
1 G-AATTGCTTGGTATA
75444609 GATTGTTGGA
Statistics
Matches: 32, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
20 15 0.47
21 7 0.22
22 4 0.12
23 6 0.19
ACGTcount: A:0.26, C:0.03, G:0.24, T:0.47
Consensus pattern (20 bp):
GAATTGCTTGGTATATGTTT
Found at i:75444593 original size:20 final size:20
Alignment explanation
Indices: 75444568--75444608 Score: 57
Period size: 20 Copynumber: 2.0 Consensus size: 20
75444558 CTTGGTTATA
*
75444568 ATGTTTG-AATTGGTTGGTAT
1 ATGTTTGCAATT-ATTGGTAT
75444588 ATGTTTGCAATTATTGGTAT
1 ATGTTTGCAATTATTGGTAT
75444608 A
1 A
75444609 GATTGTTGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 15 0.79
21 4 0.21
ACGTcount: A:0.24, C:0.02, G:0.24, T:0.49
Consensus pattern (20 bp):
ATGTTTGCAATTATTGGTAT
Found at i:75471866 original size:30 final size:30
Alignment explanation
Indices: 75471831--75471888 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
75471821 TAGGCACTTC
* *
75471831 CACACAGGT-GATCCACATGCCCGTGTGTGA
1 CACACAAGTAGAT-CACACGCCCGTGTGTGA
75471861 CACACAAGTAGATCACACGCCCGTGTGT
1 CACACAAGTAGATCACACGCCCGTGTGT
75471889 CATGGCTATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.88
31 3 0.12
ACGTcount: A:0.26, C:0.31, G:0.24, T:0.19
Consensus pattern (30 bp):
CACACAAGTAGATCACACGCCCGTGTGTGA
Found at i:75476427 original size:102 final size:102
Alignment explanation
Indices: 75476246--75476449 Score: 390
Period size: 102 Copynumber: 2.0 Consensus size: 102
75476236 TTTAACAGTG
*
75476246 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAGATTGGTTGTATGTATG
1 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAAATTGGTTGTATGTATG
75476311 GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
66 GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
75476348 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAAATTGGTTGTATGTATG
1 TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAAATTGGTTGTATGTATG
*
75476413 GCATGATTTGCTGAAATCTGAGTTTATGCATGATATA
66 GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
75476450 ATTGCCTGGA
Statistics
Matches: 100, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
102 100 1.00
ACGTcount: A:0.27, C:0.06, G:0.24, T:0.43
Consensus pattern (102 bp):
TGATTATGTGATTGATATTATGATGCATGACTGTATTATTTGGTATGAAATTGGTTGTATGTATG
GCATGATTTACTGAAATCTGAGTTTATGCATGATATA
Found at i:75476859 original size:27 final size:28
Alignment explanation
Indices: 75476820--75476877 Score: 82
Period size: 27 Copynumber: 2.1 Consensus size: 28
75476810 GATTATATCG
*
75476820 CATTATTTGTTATTCGGCAGTTTTACTA
1 CATTATTTGTTATTCGGCAGTTTTACCA
**
75476848 CATTA-TTGTTATTCGGTGGTTTTACCA
1 CATTATTTGTTATTCGGCAGTTTTACCA
75476875 CAT
1 CAT
75476878 CAAGCTATGC
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
27 22 0.81
28 5 0.19
ACGTcount: A:0.21, C:0.16, G:0.16, T:0.48
Consensus pattern (28 bp):
CATTATTTGTTATTCGGCAGTTTTACCA
Done.