Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 223 of 297
Found at i:75853264 original size:27 final size:27
Alignment explanation
Indices: 75853226--75853354 Score: 163
Period size: 27 Copynumber: 4.8 Consensus size: 27
75853216 AGGTTTGGGN
75853226 ACCCCTGTAGGGTAGAATTACTGAAAT
1 ACCCCTGTAGGGTAGAATTACTGAAAT
*
75853253 ACCCCTGTAGGGTAGAATTACAGAAAT
1 ACCCCTGTAGGGTAGAATTACTGAAAT
* *
75853280 ACTCTTGTAGGGTAGGAA-TACTGAAAT
1 ACCCCTGTAGGGTA-GAATTACTGAAAT
*
75853307 ACCCCTGTAGGGTAGAATTA-TCGAGAT
1 ACCCCTGTAGGGTAGAATTACT-GAAAT
* * *
75853334 ACCCTTGTGGGGTAAAATTAC
1 ACCCCTGTAGGGTAGAATTAC
75853355 CATTTTACCC
Statistics
Matches: 88, Mismatches: 10, Indels: 7
0.84 0.10 0.07
Matches are distributed among these distances:
26 4 0.05
27 81 0.92
28 3 0.03
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (27 bp):
ACCCCTGTAGGGTAGAATTACTGAAAT
Found at i:75853341 original size:54 final size:54
Alignment explanation
Indices: 75853226--75853354 Score: 181
Period size: 54 Copynumber: 2.4 Consensus size: 54
75853216 AGGTTTGGGN
*
75853226 ACCCCTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACAGAAAT
1 ACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACAGAAAT
* *
75853280 ACTCTTGTAGGGTAGGAA-TACTGAAATACCCCTGTAGGGTAGAATTATC-GAGAT
1 ACCCTTGTAGGGTA-GAATTACTGAAATACCCCTGTAGGGTAGAATTA-CAGAAAT
* *
75853334 ACCCTTGTGGGGTAAAATTAC
1 ACCCTTGTAGGGTAGAATTAC
75853355 CATTTTACCC
Statistics
Matches: 66, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
53 2 0.03
54 60 0.91
55 4 0.06
ACGTcount: A:0.33, C:0.17, G:0.24, T:0.26
Consensus pattern (54 bp):
ACCCTTGTAGGGTAGAATTACTGAAATACCCCTGTAGGGTAGAATTACAGAAAT
Found at i:75853644 original size:27 final size:26
Alignment explanation
Indices: 75853600--75853651 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
75853590 CTCGCTGCAA
*
75853600 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
75853627 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
75853652 GCAACCTTGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:75853879 original size:6 final size:6
Alignment explanation
Indices: 75853870--75854077 Score: 124
Period size: 6 Copynumber: 33.7 Consensus size: 6
75853860 TTTCATTCAC
* *
75853870 ATTCTG ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TTACCTA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG
* *
75853920 ATTCTT ATTCT- AGTTCTG ATTCTG ATTCTG -TTACCTG ATACTG ATTCTG
1 ATTCTG ATTCTG A-TTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* *
75853969 ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TTACCTA ATTCTG ATTCTG
1 ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG
* * * * * * *
75854019 ATTTTG GTTTTG ATTCTG -TCACCTG ATTCTG ATTTTG ATTTTG ATTCTC
1 ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG
*
75854068 ATTTTG ATTC
1 ATTCTG ATTC
75854078 AAGTTATGAT
Statistics
Matches: 160, Mismatches: 22, Indels: 40
0.72 0.10 0.18
Matches are distributed among these distances:
5 12 0.08
6 123 0.77
7 17 0.11
8 8 0.05
ACGTcount: A:0.18, C:0.17, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:75853929 original size:25 final size:25
Alignment explanation
Indices: 75853870--75854021 Score: 93
Period size: 25 Copynumber: 6.6 Consensus size: 25
75853860 TTTCATTCAC
* *
75853870 ATTCTGATTCTGATTCTGTTACTTG
1 ATTCTGATTCTGATTCTGTTACCTA
*
75853895 ATACTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
* *
75853920 ATTCTTATTCT-A----GTT--CTG
1 ATTCTGATTCTGATTCTGTTACCTA
* *
75853938 ATTCTGATTCTG-TTACCTGATA-CTG
1 ATTCTGATTCTGATT--CTGTTACCTA
*
75853963 ATTCTGATTCTG-TTACT-TGA--T-
1 ATTCTGATTCTGATT-CTGTTACCTA
75853984 A--CTGATTCTGATTCTGTTACCTA
1 ATTCTGATTCTGATTCTGTTACCTA
75854007 ATTCTGATTCTGATT
1 ATTCTGATTCTGATT
75854022 TTGGTTTTGA
Statistics
Matches: 100, Mismatches: 12, Indels: 30
0.70 0.08 0.21
Matches are distributed among these distances:
18 12 0.12
19 11 0.11
20 7 0.07
21 1 0.01
22 2 0.02
23 2 0.02
24 5 0.05
25 60 0.60
ACGTcount: A:0.20, C:0.18, G:0.14, T:0.49
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTTACCTA
Found at i:75853974 original size:37 final size:37
Alignment explanation
Indices: 75853893--75853974 Score: 112
Period size: 37 Copynumber: 2.2 Consensus size: 37
75853883 TTCTGTTACT
* * *
75853893 TGATACTGATTCTGATTCTGTTACCTAATTCTTATTC
1 TGATTCTGATTCTGATTCTGTTACCTAATACTGATTC
*
75853930 T-AGTTCTGATTCTGATTCTGTTACCTGATACTGATTC
1 TGA-TTCTGATTCTGATTCTGTTACCTAATACTGATTC
75853967 TGATTCTG
1 TGATTCTG
75853975 TTACTTGATA
Statistics
Matches: 39, Mismatches: 4, Indels: 4
0.83 0.09 0.09
Matches are distributed among these distances:
36 1 0.03
37 37 0.95
38 1 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.48
Consensus pattern (37 bp):
TGATTCTGATTCTGATTCTGTTACCTAATACTGATTC
Found at i:75853992 original size:62 final size:62
Alignment explanation
Indices: 75853871--75853992 Score: 199
Period size: 62 Copynumber: 2.0 Consensus size: 62
75853861 TTCATTCACA
* * *
75853871 TTCTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTTATTCTAG
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATACTGATTCTAG
* *
75853933 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACTTGATACTGATTCT
1 TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATACTGATTCT
75853993 GATTCTGTTA
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (62 bp):
TTCTGATTCTGATTCTGTTACCTGATACTGATTCTGATTCTGTTACCTAATACTGATTCTAG
Found at i:75854017 original size:87 final size:87
Alignment explanation
Indices: 75853873--75854058 Score: 293
Period size: 87 Copynumber: 2.1 Consensus size: 87
75853863 CATTCACATT
*
75853873 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTTATTCT-AGTTCT
1 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGA-TTCT
*
75853937 GATTCTGATTCTGTTACCTGATA
65 GATTCTGATTCTGTCACCTGATA
*
75853960 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTTTG
1 CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
* * *
75854025 GTTTTGATTCTGTCACCTGATT
66 ATTCTGATTCTGTCACCTGATA
*
75854047 CTGATTTTGATT
1 CTGATTCTGATT
75854059 TTGATTCTCA
Statistics
Matches: 91, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
87 90 0.99
88 1 0.01
ACGTcount: A:0.18, C:0.17, G:0.15, T:0.49
Consensus pattern (87 bp):
CTGATTCTGATTCTGTTACTTGATACTGATTCTGATTCTGTTACCTAATTCTGATTCTGATTCTG
ATTCTGATTCTGTCACCTGATA
Found at i:75857918 original size:53 final size:52
Alignment explanation
Indices: 75857850--75858056 Score: 191
Period size: 53 Copynumber: 3.9 Consensus size: 52
75857840 TTCCTTTTTA
* * *
75857850 AACTTACCATTGCCATGTCTTGACATGGTCTTACGTGGTATCCTTGCCTTAT
1 AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT
* * * * *
75857902 GAACTCACCATTGCCATGCCTTGGCATGGTCTTACATGGGATCTTTGCCTTAT
1 -AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT
* * ** * * *
75857955 ATTAGTTTATCAATGCCATTTCTTGACATGGTCTTACATGATTTCCTTGCCTTGTAA
1 A--A-CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCC-T-TAT
* *
75858012 AACTTACCAATGTCATGCCTTCG-CATGGTCTTACTTGGTATCCTT
1 AACTTACCAATGCCATGCCTT-GACATGGTCTTACATGGTATCCTT
75858057 AAACCCTAAT
Statistics
Matches: 122, Mismatches: 26, Indels: 11
0.77 0.16 0.07
Matches are distributed among these distances:
52 1 0.01
53 46 0.38
54 34 0.28
55 37 0.30
56 1 0.01
57 3 0.02
ACGTcount: A:0.20, C:0.24, G:0.17, T:0.39
Consensus pattern (52 bp):
AACTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTAT
Found at i:75861739 original size:44 final size:42
Alignment explanation
Indices: 75861670--75861836 Score: 129
Period size: 43 Copynumber: 3.9 Consensus size: 42
75861660 CTATATGTTT
** *
75861670 TTTCGTGTAAGACCACATCTGGGACATTGGCATCG-ACTTATAA
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTA-TT-TAA
* * *
75861713 TTTACGTGTAAGACCATGTCTAGGACATTAGCGTCGTATTTGA
1 TTT-CGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTAA
* * * * * *
75861756 TTTCGCGTAAGACCCTGTCTTGGACAGTGGCATCAATATTTGA
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATC-GTATTTAA
* * * ** *
75861799 TTACATGTAAGACCACGTCTAGGATGTTGGCATTGTAT
1 TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTAT
75861837 AAGCTTTCCA
Statistics
Matches: 97, Mismatches: 24, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
42 28 0.29
43 39 0.40
44 29 0.30
45 1 0.01
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCATGTCTAGGACATTGGCATCGTATTTAA
Found at i:75873278 original size:43 final size:42
Alignment explanation
Indices: 75873167--75873284 Score: 107
Period size: 43 Copynumber: 2.8 Consensus size: 42
75873157 ATGATTTATG
* * * * *
75873167 TGTAAGACCATGTCTGGGACATCGACATCGTATTTGACTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGACTACA
* *
75873209 TGTAAGGCC-CTGTCTGGGATAG-TGGCATCGATATTTGA-TCACA
1 TGTAAGACCAC-GTCTGGGA-CGTTGGCATCG-TATTTGACT-ACA
*
75873252 TGTAAGACCACGTCTGGGACGTTGGCATTGTAT
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTAT
75873285 GAGCTTTCCA
Statistics
Matches: 60, Mismatches: 10, Indels: 12
0.73 0.12 0.15
Matches are distributed among these distances:
42 27 0.45
43 32 0.53
44 1 0.02
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGACTACA
Found at i:75876732 original size:40 final size:39
Alignment explanation
Indices: 75876688--75876871 Score: 140
Period size: 40 Copynumber: 4.5 Consensus size: 39
75876678 TTCAGATATA
75876688 TATATGTGGCACTTAGTGTGCAACTCAAGAA-AGCTTCGGC
1 TATAT-TGGCACTTAGTGTGCAACTC-AGAATAGCTTCGGC
* * *
75876728 TATATATGGCACTTAGTGTGCGATTCGGAATAGCTTCGGC
1 TATAT-TGGCACTTAGTGTGCAACTCAGAATAGCTTCGGC
* *
75876768 TATATTAGGCACTTAGTGTGTGAGAC-C-GAGATAGCTTCAGC
1 TATATT-GGCACTTAGTGTG-CA-ACTCAGA-ATAGCTTCGGC
* * * * * *
75876809 TATATAAGGCACTTGGCGTGCAAAATTATAATAGCTTCGGC
1 TATAT-TGGCACTTAGTGTGC-AACTCAGAATAGCTTCGGC
*
75876850 TATGTATTGGCACTAAGTGTGC
1 TA--TATTGGCACTTAGTGTGC
75876872 GAGATATCGA
Statistics
Matches: 113, Mismatches: 20, Indels: 20
0.74 0.13 0.13
Matches are distributed among these distances:
39 4 0.04
40 53 0.47
41 40 0.35
42 13 0.12
43 3 0.03
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (39 bp):
TATATTGGCACTTAGTGTGCAACTCAGAATAGCTTCGGC
Found at i:75878722 original size:42 final size:42
Alignment explanation
Indices: 75878611--75878772 Score: 182
Period size: 42 Copynumber: 3.8 Consensus size: 42
75878601 TACCATACCA
* *
75878611 ATGCCATATCCCAGATATGGTCTTACATGTAA-TCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACATG-AAGTCTCATATTG
* * * * *
75878653 ATGCCAATAGCCCAGCTATGATATTACATGAAGTCTCACATTG
1 ATGCC-ATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
** * * *
75878696 ATATCATATCCCAGATATGGTCTTACACGTAGTCTCATAGTG
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
*
75878738 ATGCCATATCCCAGATATGGTCTTACATGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACATGAAGTCT
75878773 TAGTAACCCC
Statistics
Matches: 98, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
42 68 0.69
43 30 0.31
ACGTcount: A:0.28, C:0.23, G:0.17, T:0.32
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACATGAAGTCTCATATTG
Found at i:75887593 original size:43 final size:41
Alignment explanation
Indices: 75887531--75887683 Score: 193
Period size: 42 Copynumber: 3.7 Consensus size: 41
75887521 TACCATACCA
75887531 ATGCCATATCCCAAATATGGTCTTACATGTAATCTCATATCG
1 ATGCCATATCCCAAATATGGTCTTACA-GTAATCTCATATCG
* * **
75887573 ATGCCAATAGCCCAACTATGGTCTTACACAAAGTCTCATATCG
1 ATGCC-ATATCCCAAATATGGTCTTACAGTAA-TCTCATATCG
* *
75887616 ATGTCATATCCCAAATATGGTCTTACAAGTAGTCTCATAGT-G
1 ATGCCATATCCCAAATATGGTCTTAC-AGTAATCTCATA-TCG
75887658 ATGCCATATCCC-AATATGGTCTTACA
1 ATGCCATATCCCAAATATGGTCTTACA
75887684 CGTAGTCTTA
Statistics
Matches: 96, Mismatches: 11, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
40 1 0.01
41 13 0.14
42 45 0.47
43 37 0.39
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.31
Consensus pattern (41 bp):
ATGCCATATCCCAAATATGGTCTTACAGTAATCTCATATCG
Found at i:75890050 original size:27 final size:27
Alignment explanation
Indices: 75890020--75890114 Score: 120
Period size: 27 Copynumber: 3.5 Consensus size: 27
75890010 CCTTAGGGGC
*
75890020 ATTTCGGTAATTTTACAAGTCGAGGGT
1 ATTTCGGTAATTTTACAAATCGAGGGT
* *
75890047 ATTTCGATAATTGTACAAATCGAGGGT
1 ATTTCGGTAATTTTACAAATCGAGGGT
* *
75890074 ATTTCAGTAATTTTACAAAT-TAGGGGT
1 ATTTCGGTAATTTTACAAATCGA-GGGT
*
75890101 ATTTTGGTAATTTT
1 ATTTCGGTAATTTT
75890115 CCTTTATTAC
Statistics
Matches: 58, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
26 1 0.02
27 57 0.98
ACGTcount: A:0.29, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
ATTTCGGTAATTTTACAAATCGAGGGT
Found at i:75890446 original size:28 final size:29
Alignment explanation
Indices: 75890414--75890478 Score: 105
Period size: 28 Copynumber: 2.3 Consensus size: 29
75890404 ACATACATGT
*
75890414 ATATGGCCCACTAGGCCC-AATCTCATTC
1 ATATGGCCCACTAGGCCCAAATCACATTC
*
75890442 ATATGGCCCATTAGGCCCAAATCACATTC
1 ATATGGCCCACTAGGCCCAAATCACATTC
75890471 ATATGGCC
1 ATATGGCC
75890479 TATCTGGCCC
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 17 0.50
29 17 0.50
ACGTcount: A:0.28, C:0.32, G:0.15, T:0.25
Consensus pattern (29 bp):
ATATGGCCCACTAGGCCCAAATCACATTC
Found at i:75890487 original size:29 final size:29
Alignment explanation
Indices: 75890414--75890498 Score: 106
Period size: 29 Copynumber: 3.0 Consensus size: 29
75890404 ACATACATGT
*
75890414 ATATGGCCCA-CTAGGCCCAATCTCATTC
1 ATATGGCCCATCTAGGCCCAATCACATTC
75890442 ATATGGCCCAT-TAGGCCCAAATCACATTC
1 ATATGGCCCATCTAGGCCC-AATCACATTC
*
75890471 ATATGGCCTATCT-GGCCCGAATCA-ATTC
1 ATATGGCCCATCTAGGCCC-AATCACATTC
75890499 CAAGCCATGT
Statistics
Matches: 51, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
28 21 0.41
29 29 0.57
30 1 0.02
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (29 bp):
ATATGGCCCATCTAGGCCCAATCACATTC
Found at i:75895194 original size:39 final size:40
Alignment explanation
Indices: 75895132--75895358 Score: 270
Period size: 39 Copynumber: 5.8 Consensus size: 40
75895122 ACTAGCACAA
* * * **
75895132 AGCCTTCGGAACTTTAAGCCCGGATAT-ATTCCCAGCACGT
1 AGCCTACGG-ACTTTAAGTCCGGATATAATTCCCTGCATAT
75895172 AGCCTACGGA-TCTTAAGTCCGGATATAATT-CCTGCATAT
1 AGCCTACGGACT-TTAAGTCCGGATATAATTCCCTGCATAT
* * *
75895211 AGCCTGCGGACTTTAAGTTCGGATATAATTCTC-GCATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
* *
75895250 AGCTTACGGACTTTAAGTCCGGATATAATT-CTTGCATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
75895289 AGCCTACGGACTTTAAGTCCGGATATAATTCCC-GCATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
* *
75895328 AGCCTGCAGG-CTTTTAGTCCGGATATAATTC
1 AGCCTAC-GGACTTTAAGTCCGGATATAATTC
75895359 TCAAATATCA
Statistics
Matches: 163, Mismatches: 17, Indels: 15
0.84 0.09 0.08
Matches are distributed among these distances:
38 1 0.01
39 146 0.90
40 16 0.10
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (40 bp):
AGCCTACGGACTTTAAGTCCGGATATAATTCCCTGCATAT
Found at i:75895271 original size:78 final size:78
Alignment explanation
Indices: 75895132--75895358 Score: 298
Period size: 78 Copynumber: 2.9 Consensus size: 78
75895122 ACTAGCACAA
* * **
75895132 AGCCTTCGGAACTTTAAGCCCGGATAT-ATTCCCAGCACGTAGCCTACGGA-TCTTAAGTCCGGA
1 AGCCTACGG-ACTTTAAGTCCGGATATAATTCCC-GCATATAGCCTACGGACT-TTAAGTCCGGA
75895195 TATAATTCCTGCATAT
63 TATAATTCCTGCATAT
* * * *
75895211 AGCCTGCGGACTTTAAGTTCGGATATAATTCTCGCATATAGCTTACGGACTTTAAGTCCGGATAT
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGACTTTAAGTCCGGATAT
*
75895276 AATTCTTGCATAT
66 AATTCCTGCATAT
* *
75895289 AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTGCAGG-CTTTTAGTCCGGATA
1 AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTAC-GGACTTTAAGTCCGGATA
75895353 TAATTC
65 TAATTC
75895359 TCAAATATCA
Statistics
Matches: 131, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
78 115 0.88
79 16 0.12
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.31
Consensus pattern (78 bp):
AGCCTACGGACTTTAAGTCCGGATATAATTCCCGCATATAGCCTACGGACTTTAAGTCCGGATAT
AATTCCTGCATAT
Found at i:75900807 original size:46 final size:46
Alignment explanation
Indices: 75900754--75900937 Score: 197
Period size: 46 Copynumber: 4.0 Consensus size: 46
75900744 AGTTTTGCCC
** * *
75900754 AGGTTCTGAGCTTTTGCATATGTTGCAGACTCAAGAATACATGAAT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
* * **
75900800 AGGTTCTGAGCTCCTGCATATGTTGTAAACTCGAGAATATGGGAAT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
* * * * * **
75900846 AGGTTTTGAGCTCTTACATATGTTGCGGACTCGAGCATACAGGTTT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
* ** *
75900892 AGTTTCCAAGCTCCTGCATATGTTGTAGACTCGAGAATACAGGAAT
1 AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
75900938 GTTAAGCCCT
Statistics
Matches: 108, Mismatches: 30, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
46 108 1.00
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.32
Consensus pattern (46 bp):
AGGTTCTGAGCTCCTGCATATGTTGCAGACTCGAGAATACAGGAAT
Found at i:75900911 original size:92 final size:92
Alignment explanation
Indices: 75900754--75900930 Score: 237
Period size: 92 Copynumber: 1.9 Consensus size: 92
75900744 AGTTTTGCCC
* * * **
75900754 AGGTTCTGAGCTTTTGCATATGTTGCAGACTCAAGAATACATGAATAGGTTCTGAGCTCCTGCAT
1 AGGTTCTGAGCTCTTACATATGTTGCAGACTCAAGAATACAGGAATAGGTTCCAAGCTCCTGCAT
75900819 ATGTTGTAAACTCGAGAATATGGGAAT
66 ATGTTGTAAACTCGAGAATATGGGAAT
* * * * ** *
75900846 AGGTTTTGAGCTCTTACATATGTTGCGGACTCGAGCATACAGGTTTAGTTTCCAAGCTCCTGCAT
1 AGGTTCTGAGCTCTTACATATGTTGCAGACTCAAGAATACAGGAATAGGTTCCAAGCTCCTGCAT
*
75900911 ATGTTGTAGACTCGAGAATA
66 ATGTTGTAAACTCGAGAATA
75900931 CAGGAATGTT
Statistics
Matches: 72, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
92 72 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (92 bp):
AGGTTCTGAGCTCTTACATATGTTGCAGACTCAAGAATACAGGAATAGGTTCCAAGCTCCTGCAT
ATGTTGTAAACTCGAGAATATGGGAAT
Found at i:75903383 original size:40 final size:40
Alignment explanation
Indices: 75903314--75903562 Score: 383
Period size: 40 Copynumber: 6.2 Consensus size: 40
75903304 AACCCAAGTA
* *
75903314 CCTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75903353 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75903393 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75903433 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
75903473 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * ** *
75903513 CCTTCGGCGGGACTTAACCCAGATATAGCCACTAGCACAAATG
1 CCTT---CGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
75903556 CCTTCGG
1 CCTTCGG
75903563 ATCTTAGTCC
Statistics
Matches: 199, Mismatches: 7, Indels: 7
0.93 0.03 0.03
Matches are distributed among these distances:
39 13 0.07
40 149 0.75
43 37 0.19
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:75909758 original size:21 final size:21
Alignment explanation
Indices: 75909734--75909775 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
75909724 TATAATATAA
75909734 TAATA-TCTAATTATATTATTT
1 TAATACTCTAATTA-ATTATTT
*
75909755 TAATACTTTAATTAATTATTT
1 TAATACTCTAATTAATTATTT
75909776 ATGACCTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.38, C:0.05, G:0.00, T:0.57
Consensus pattern (21 bp):
TAATACTCTAATTAATTATTT
Found at i:75910674 original size:18 final size:18
Alignment explanation
Indices: 75910651--75910689 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
75910641 ACATATATAC
75910651 ATACGTGATTT-TACATAA
1 ATACGTGATTTCTACA-AA
*
75910669 ATACGTGGTTTCTACAAA
1 ATACGTGATTTCTACAAA
75910687 ATA
1 ATA
75910690 TGTGTGATTA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 15 0.79
19 4 0.21
ACGTcount: A:0.38, C:0.13, G:0.13, T:0.36
Consensus pattern (18 bp):
ATACGTGATTTCTACAAA
Found at i:75910755 original size:15 final size:16
Alignment explanation
Indices: 75910737--75910766 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
75910727 TTTTTTATTC
75910737 TAAATACGT-ATTTTG
1 TAAATACGTGATTTTG
75910752 TAAATACGTGATTTT
1 TAAATACGTGATTTT
75910767 CATAATGTCA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.33, C:0.07, G:0.13, T:0.47
Consensus pattern (16 bp):
TAAATACGTGATTTTG
Found at i:75912645 original size:14 final size:15
Alignment explanation
Indices: 75912622--75912673 Score: 61
Period size: 14 Copynumber: 3.3 Consensus size: 15
75912612 TTTTAATTAC
75912622 AAAATTTTAATTTTAT
1 AAAA-TTTAATTTTAT
*
75912638 AATA-TTAATTTTAT
1 AAAATTTAATTTTAT
75912652 AAAATTTAATATTATAT
1 AAAATTTAAT-TT-TAT
75912669 AAAAT
1 AAAAT
75912674 ATTATGTAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
14 13 0.42
15 5 0.16
16 5 0.16
17 8 0.26
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (15 bp):
AAAATTTAATTTTAT
Found at i:75913516 original size:30 final size:30
Alignment explanation
Indices: 75913475--75913533 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 30
75913465 TATTTTATTG
75913475 TTAATTCTGTTATGATTTTAAAGACATTTT
1 TTAATTCTGTTATGATTTTAAAGACATTTT
* * *
75913505 TTAATTTTGTTATTATTTTAGAGACATTT
1 TTAATTCTGTTATGATTTTAAAGACATTT
75913534 GTTTGTTAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.29, C:0.05, G:0.10, T:0.56
Consensus pattern (30 bp):
TTAATTCTGTTATGATTTTAAAGACATTTT
Found at i:75913638 original size:18 final size:18
Alignment explanation
Indices: 75913617--75913656 Score: 55
Period size: 18 Copynumber: 2.2 Consensus size: 18
75913607 GAAATATTTA
*
75913617 TTTTGATGT-TTTTAGTAT
1 TTTTGATGTATTATA-TAT
75913635 TTTTGATGTATTATATAT
1 TTTTGATGTATTATATAT
75913653 TTTT
1 TTTT
75913657 TAAATTTATA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.20, C:0.00, G:0.12, T:0.68
Consensus pattern (18 bp):
TTTTGATGTATTATATAT
Found at i:75913680 original size:11 final size:12
Alignment explanation
Indices: 75913658--75913690 Score: 50
Period size: 11 Copynumber: 2.8 Consensus size: 12
75913648 TATATTTTTT
*
75913658 AAATTTATATAA
1 AAATTAATATAA
75913670 AAA-TAATATAA
1 AAATTAATATAA
75913681 AAATTAATAT
1 AAATTAATAT
75913691 GGGAGGGCCG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
11 10 0.53
12 9 0.47
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (12 bp):
AAATTAATATAA
Found at i:75914092 original size:17 final size:17
Alignment explanation
Indices: 75914039--75914105 Score: 57
Period size: 17 Copynumber: 3.9 Consensus size: 17
75914029 TATTTATATC
75914039 TACTATTTATATTATTG
1 TACTATTTATATTATTG
* * *
75914056 AATTAAATTTCACATT-TTG
1 TACT--ATTT-ATATTATTG
75914075 TACTATTTATATTATTG
1 TACTATTTATATTATTG
*
75914092 TATTATTTA-ATTAT
1 TACTATTTATATTAT
75914106 ATTAAATCTT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
16 9 0.23
17 17 0.44
19 9 0.23
20 4 0.10
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (17 bp):
TACTATTTATATTATTG
Found at i:75918253 original size:21 final size:21
Alignment explanation
Indices: 75918206--75918269 Score: 65
Period size: 21 Copynumber: 3.0 Consensus size: 21
75918196 TGGTTATTAT
* * *
75918206 ACACCTATAACTACATTTAAA
1 ACACCTATAACAACATTTGAG
*
75918227 ATACCTATAACAACATTTGAG
1 ACACCTATAACAACATTTGAG
* * *
75918248 ACACCTAAAACAATAATTGAG
1 ACACCTATAACAACATTTGAG
75918269 A
1 A
75918270 TTGAAATCAT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 35 1.00
ACGTcount: A:0.48, C:0.20, G:0.06, T:0.25
Consensus pattern (21 bp):
ACACCTATAACAACATTTGAG
Found at i:75923223 original size:60 final size:60
Alignment explanation
Indices: 75923118--75923256 Score: 156
Period size: 59 Copynumber: 2.3 Consensus size: 60
75923108 TTTAGGTCTT
* ** * * *
75923118 AATGTGAGAATAATTACTAAACTCAGGGTTTAATTTAGACCAAAAAAAAGTTTAAGCTC-C
1 AATGTGAGAATAATTACTAAACTCAAGACTTAACTTAGACCAAAAAAAAGTTCAAAC-CAC
** *
75923178 AATGTGAGAATAATTACTAAGTTCAAGACTTAACTT-GGCCAAAAAAAAGTTCAAACCAC
1 AATGTGAGAATAATTACTAAACTCAAGACTTAACTTAGACCAAAAAAAAGTTCAAACCAC
* *
75923237 AATGTGAAAAGAATTACTAA
1 AATGTGAGAATAATTACTAA
75923257 CTTTAAGCCC
Statistics
Matches: 67, Mismatches: 11, Indels: 3
0.83 0.14 0.04
Matches are distributed among these distances:
58 1 0.01
59 36 0.54
60 30 0.45
ACGTcount: A:0.46, C:0.14, G:0.14, T:0.26
Consensus pattern (60 bp):
AATGTGAGAATAATTACTAAACTCAAGACTTAACTTAGACCAAAAAAAAGTTCAAACCAC
Found at i:75923537 original size:18 final size:18
Alignment explanation
Indices: 75923509--75923552 Score: 79
Period size: 18 Copynumber: 2.4 Consensus size: 18
75923499 GATAAAAGGG
75923509 AAATGATTTTTGTATAGAA
1 AAAT-ATTTTTGTATAGAA
75923528 AAATATTTTTGTATAGAA
1 AAATATTTTTGTATAGAA
75923546 AAATATT
1 AAATATT
75923553 GTACAAAATA
Statistics
Matches: 25, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.45, C:0.00, G:0.11, T:0.43
Consensus pattern (18 bp):
AAATATTTTTGTATAGAA
Found at i:75925248 original size:20 final size:22
Alignment explanation
Indices: 75925223--75925262 Score: 57
Period size: 20 Copynumber: 1.9 Consensus size: 22
75925213 AATACACTTG
*
75925223 AAACAACAA-GTATT-GATACC
1 AAACAAAAAGGTATTCGATACC
75925243 AAACAAAAAGGTATTCGATA
1 AAACAAAAAGGTATTCGATA
75925263 TTTTTTTGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 8 0.47
21 5 0.29
22 4 0.24
ACGTcount: A:0.53, C:0.15, G:0.12, T:0.20
Consensus pattern (22 bp):
AAACAAAAAGGTATTCGATACC
Found at i:75927389 original size:13 final size:13
Alignment explanation
Indices: 75927371--75927396 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
75927361 GTTCGACAGG
75927371 GACACGCCCATGT
1 GACACGCCCATGT
75927384 GACACGCCCATGT
1 GACACGCCCATGT
75927397 ACGATTACTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.23, C:0.38, G:0.23, T:0.15
Consensus pattern (13 bp):
GACACGCCCATGT
Found at i:75930672 original size:27 final size:27
Alignment explanation
Indices: 75930655--75931134 Score: 474
Period size: 27 Copynumber: 17.6 Consensus size: 27
75930645 ATATTAAGTC
75930655 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
75930682 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
75930710 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
75930737 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
75930764 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
75930792 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
75930820 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
75930848 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
75930876 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
75930903 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* *
75930930 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTATATAATC-AACT
* * *
75930958 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
75930985 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
75931012 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
75931039 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * *
75931066 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTCAGTGCTATATAATCAACT
* * * *
75931093 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTCAGTGCTATATAATCAACT
*
75931120 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
75931135 GCACAATTTA
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTCAGTGCTATATAATCAACT
Found at i:75930785 original size:54 final size:54
Alignment explanation
Indices: 75930655--75931134 Score: 852
Period size: 54 Copynumber: 8.8 Consensus size: 54
75930645 ATATTAAGTC
* * * *
75930655 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACT
75930710 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
75930764 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
75930820 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTC-AACT
75930876 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
75930930 CGCACACTTAGTGCTACATAATCAAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAACT
75930985 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
75931039 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
*
75931093 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCT
75931135 GCACAATTTA
Statistics
Matches: 415, Mismatches: 7, Indels: 7
0.97 0.02 0.02
Matches are distributed among these distances:
54 179 0.43
55 153 0.37
56 83 0.20
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAACT
Found at i:75930792 original size:82 final size:82
Alignment explanation
Indices: 75930655--75931134 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
75930645 ATATTAAGTC
* * * *
75930655 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
75930720 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
75930737 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
75930802 GTGCTACATAGTCAAACT
66 GTGCTACATAGTC-AACT
75930820 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTT
75930885 AGTGCTACATAGTCAACT
65 AGTGCTACATAGTCAACT
*
75930903 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
75930968 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
75930985 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AACTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
75931049 GTGCTACATAGTCAACT
66 GTGCTACATAGTCAACT
*
75931066 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTC-AATTCGCACACTTA
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
75931130 GTGCT
66 GTGCT
75931135 GCACAATTTA
Statistics
Matches: 389, Mismatches: 7, Indels: 5
0.97 0.02 0.01
Matches are distributed among these distances:
81 99 0.25
82 181 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
GTGCTACATAGTCAACT
Found at i:75940255 original size:27 final size:27
Alignment explanation
Indices: 75940224--75940399 Score: 210
Period size: 27 Copynumber: 6.5 Consensus size: 27
75940214 TAAATTGTAC
75940224 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75940251 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75940277 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75940305 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
*
75940333 AGCACTAAGTGTGCGATTTGATTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75940360 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75940387 AGCACTGAGTGTG
1 AGCACTAAGTGTG
75940400 TGGACTCGAT
Statistics
Matches: 129, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.14, G:0.28, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75940338 original size:82 final size:81
Alignment explanation
Indices: 75940225--75940380 Score: 242
Period size: 82 Copynumber: 1.9 Consensus size: 81
75940215 AAATTGTACA
*
75940225 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTA-GCACTAAGTG
75940289 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75940306 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTG
*
75940371 TGCGAGTTGA
65 TGCGAATTGA
75940381 TTATATAGCA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
81 15 0.22
82 52 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75940392 original size:82 final size:81
Alignment explanation
Indices: 75940221--75940399 Score: 234
Period size: 82 Copynumber: 2.2 Consensus size: 81
75940211 GATTAAATTG
*
75940221 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
75940286 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75940302 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTATG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGAT-GCACT
* **
75940366 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75940384 TATAGCACTGAGTGTG
1 TACAGCACTAAGTGTG
75940400 TGGACTCGAT
Statistics
Matches: 83, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75947904 original size:27 final size:27
Alignment explanation
Indices: 75947873--75948050 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
75947863 TAAATTGTAC
75947873 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
75947900 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75947926 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
75947954 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
75947982 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
75948009 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
75948036 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
75948051 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:75947987 original size:82 final size:81
Alignment explanation
Indices: 75947874--75948029 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
75947864 AAATTGTACA
* *
75947874 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
75947938 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
75947955 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
75948020 TGCGAGTTGA
65 TGCGAATTGA
75948030 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:75948041 original size:82 final size:81
Alignment explanation
Indices: 75947870--75948050 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
75947860 GATTAAATTG
* *
75947870 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
75947935 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
75947951 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
75948015 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
75948033 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
75948051 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:75948908 original size:144 final size:144
Alignment explanation
Indices: 75948648--75948936 Score: 578
Period size: 144 Copynumber: 2.0 Consensus size: 144
75948638 TTCTCTCCAT
75948648 TATGAAAGGTTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGTGCATCTTCTCAAGAGGTCC
1 TATGAAAGGTTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGTGCATCTTCTCAAGAGGTCC
75948713 TTGTATCTCTCCCATGCATCATAGAGTGTTTCTAAATCCATCTGCACAAAGAAAGAAATATCATT
66 TTGTATCTCTCCCATGCATCATAGAGTGTTTCTAAATCCATCTGCACAAAGAAAGAAATATCATT
75948778 ACATAATTTAACCG
131 ACATAATTTAACCG
75948792 TATGAAAGGTTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGTGCATCTTCTCAAGAGGTCC
1 TATGAAAGGTTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGTGCATCTTCTCAAGAGGTCC
75948857 TTGTATCTCTCCCATGCATCATAGAGTGTTTCTAAATCCATCTGCACAAAGAAAGAAATATCATT
66 TTGTATCTCTCCCATGCATCATAGAGTGTTTCTAAATCCATCTGCACAAAGAAAGAAATATCATT
75948922 ACATAATTTAACCG
131 ACATAATTTAACCG
75948936 T
1 T
75948937 TTTAGCTGGC
Statistics
Matches: 145, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
144 145 1.00
ACGTcount: A:0.32, C:0.21, G:0.18, T:0.29
Consensus pattern (144 bp):
TATGAAAGGTTTGAACCTGTAGCCAAAGCGGTAACCCATGGTGAGTGCATCTTCTCAAGAGGTCC
TTGTATCTCTCCCATGCATCATAGAGTGTTTCTAAATCCATCTGCACAAAGAAAGAAATATCATT
ACATAATTTAACCG
Found at i:75953534 original size:42 final size:42
Alignment explanation
Indices: 75953471--75953556 Score: 154
Period size: 42 Copynumber: 2.0 Consensus size: 42
75953461 ACCACATAAC
* *
75953471 ACCTAAAATCATACCTTATCAAGGCATTTCTCAAGCATTTAT
1 ACCTAAAATCATACCTCATCAAGGCATTTCTCAAGAATTTAT
75953513 ACCTAAAATCATACCTCATCAAGGCATTTCTCAAGAATTTAT
1 ACCTAAAATCATACCTCATCAAGGCATTTCTCAAGAATTTAT
75953555 AC
1 AC
75953557 TCCATAAATC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 42 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.31
Consensus pattern (42 bp):
ACCTAAAATCATACCTCATCAAGGCATTTCTCAAGAATTTAT
Found at i:75954232 original size:41 final size:41
Alignment explanation
Indices: 75954122--75954279 Score: 167
Period size: 40 Copynumber: 3.9 Consensus size: 41
75954112 AAGTGCCATA
* ** *
75954122 CTCGATATCTCGCACATTAAGTGCTGTACATAGCTGAAGCTAT
1 CTCGATA--TCGCACACTAAGTGCCATATATAGCTGAAGCTAT
* * * *
75954165 CT-TAAATCACACACTAAGTGCTATATATAGCTGAAGCTAT
1 CTCGATATCGCACACTAAGTGCCATATATAGCTGAAGCTAT
* * *
75954205 CTCGATCTCGCACACTAAGCGCCATATATAGCCGAAGCTAT
1 CTCGATATCGCACACTAAGTGCCATATATAGCTGAAGCTAT
* *
75954246 GTCGA-ATCGCACACTAAGTGCCACATATAGCTGA
1 CTCGATATCGCACACTAAGTGCCATATATAGCTGA
75954280 TTTGTCATCG
Statistics
Matches: 96, Mismatches: 18, Indels: 5
0.81 0.15 0.04
Matches are distributed among these distances:
40 57 0.59
41 35 0.36
42 2 0.02
43 2 0.02
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (41 bp):
CTCGATATCGCACACTAAGTGCCATATATAGCTGAAGCTAT
Found at i:75954260 original size:81 final size:81
Alignment explanation
Indices: 75954128--75954279 Score: 196
Period size: 81 Copynumber: 1.9 Consensus size: 81
75954118 CATACTCGAT
* * ** * * * *
75954128 ATCTCGCACATTAAGTGCTGTACATAGCTGAAGCTATCTTAAATCACACACTAAGTGCTATATAT
1 ATCTCGCACACTAAGCGCCATACATAGCCGAAGCTATCTCAAATCACACACTAAGTGCCACATAT
75954193 AGCTGAAGCTATCTCG
66 AGCTGAAGCTATCTCG
* * * *
75954209 ATCTCGCACACTAAGCGCCATATATAGCCGAAGCTATGTCGAATCGCACACTAAGTGCCACATAT
1 ATCTCGCACACTAAGCGCCATACATAGCCGAAGCTATCTCAAATCACACACTAAGTGCCACATAT
75954274 AGCTGA
66 AGCTGA
75954280 TTTGTCATCG
Statistics
Matches: 59, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
81 59 1.00
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (81 bp):
ATCTCGCACACTAAGCGCCATACATAGCCGAAGCTATCTCAAATCACACACTAAGTGCCACATAT
AGCTGAAGCTATCTCG
Found at i:75959648 original size:27 final size:26
Alignment explanation
Indices: 75959618--75959681 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 26
75959608 CCTCGACTTG
75959618 TAAAATTACCAAAGTACCCCCGATTTA
1 TAAAATTACCAAA-TACCCCCGATTTA
* * *
75959645 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTA-CCAAATACCCCCGATTTA
75959672 TAAAATTACC
1 TAAAATTACC
75959682 GAAAAAGATA
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
26 2 0.06
27 26 0.79
28 5 0.15
ACGTcount: A:0.41, C:0.23, G:0.06, T:0.30
Consensus pattern (26 bp):
TAAAATTACCAAATACCCCCGATTTA
Found at i:75959770 original size:27 final size:27
Alignment explanation
Indices: 75959691--75959764 Score: 121
Period size: 27 Copynumber: 2.7 Consensus size: 27
75959681 CGAAAAAGAT
*
75959691 AGAATTACCATTTTACTCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
* *
75959718 AGAATTATCGTTTTACCCTCGATTTAC
1 AGAATTACCATTTTACCCTCGATTTAC
75959745 AGAATTACCATTTTACCCTC
1 AGAATTACCATTTTACCCTC
75959765 AGTTTANNNN
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 42 1.00
ACGTcount: A:0.28, C:0.24, G:0.08, T:0.39
Consensus pattern (27 bp):
AGAATTACCATTTTACCCTCGATTTAC
Found at i:75963162 original size:12 final size:12
Alignment explanation
Indices: 75963145--75963183 Score: 60
Period size: 12 Copynumber: 3.2 Consensus size: 12
75963135 TGTCTAGCCG
*
75963145 GTGTGCCAGGCC
1 GTGTGCTAGGCC
*
75963157 GTGTGCTAGGCT
1 GTGTGCTAGGCC
75963169 GTGTGCTAGGCC
1 GTGTGCTAGGCC
75963181 GTG
1 GTG
75963184 CCAAAACTGT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.08, C:0.23, G:0.44, T:0.26
Consensus pattern (12 bp):
GTGTGCTAGGCC
Found at i:75963165 original size:24 final size:25
Alignment explanation
Indices: 75963133--75963183 Score: 68
Period size: 24 Copynumber: 2.1 Consensus size: 25
75963123 CAGACACGCC
75963133 TGTGTCTAGCCGGTGTGCCAGGCCG
1 TGTGTCTAGCCGGTGTGCCAGGCCG
* * *
75963158 TGTG-CTAGGCTGTGTGCTAGGCCG
1 TGTGTCTAGCCGGTGTGCCAGGCCG
75963182 TG
1 TG
75963184 CCAAAACTGT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
24 19 0.83
25 4 0.17
ACGTcount: A:0.08, C:0.24, G:0.41, T:0.27
Consensus pattern (25 bp):
TGTGTCTAGCCGGTGTGCCAGGCCG
Found at i:75964334 original size:40 final size:40
Alignment explanation
Indices: 75964194--75964336 Score: 151
Period size: 40 Copynumber: 3.5 Consensus size: 40
75964184 CGATATCTCA
** * * * **
75964194 CACACTAAGTGCTTTACATAGCCGAAACTACCTTAAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATCG
* * * *
75964234 CACACTAAGTGCTATATATAGTCGAAGTTATCTCGATCTCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGA-ATCG
* *
75964275 CACACTAAGCGCCATATATAGCCGAAGCTATGTCGAATCG
1 CACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATCG
*
75964315 CACACTAAGTGCCACATATAGC
1 CACACTAAGTGCCATATATAGC
75964337 TGATTTGTCA
Statistics
Matches: 85, Mismatches: 17, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
40 51 0.60
41 34 0.40
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.24
Consensus pattern (40 bp):
CACACTAAGTGCCATATATAGCCGAAGCTATCTCGAATCG
Found at i:75969922 original size:17 final size:19
Alignment explanation
Indices: 75969893--75969929 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
75969883 TTAGCATTCT
75969893 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
75969911 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
75969929 T
1 T
75969930 GAGTTATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:75974505 original size:25 final size:25
Alignment explanation
Indices: 75974475--75974525 Score: 93
Period size: 25 Copynumber: 2.0 Consensus size: 25
75974465 AAGATAACTC
75974475 ATCGAATCCCCTAATAGAATTCTCA
1 ATCGAATCCCCTAATAGAATTCTCA
*
75974500 ATCGAATCCTCTAATAGAATTCTCA
1 ATCGAATCCCCTAATAGAATTCTCA
75974525 A
1 A
75974526 GCCAAAATTC
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.29
Consensus pattern (25 bp):
ATCGAATCCCCTAATAGAATTCTCA
Found at i:75974537 original size:25 final size:25
Alignment explanation
Indices: 75974485--75974537 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
75974475 ATCGAATCCC
* * **
75974485 CTAATAGAATTCTCAATCGAATCCT
1 CTAATAGAATTCTCAAGCCAAAACT
*
75974510 CTAATAGAATTCTCAAGCCAAAATT
1 CTAATAGAATTCTCAAGCCAAAACT
75974535 CTA
1 CTA
75974538 CTTTTTCAGG
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
25 23 1.00
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.30
Consensus pattern (25 bp):
CTAATAGAATTCTCAAGCCAAAACT
Found at i:75976185 original size:17 final size:19
Alignment explanation
Indices: 75976156--75976192 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 19
75976146 TTAGTATTCT
75976156 TACCAAGAGTTCAT-CTCA
1 TACCAAGAGTTCATACTCA
75976174 TACCAA-AGTTCATACTCA
1 TACCAAGAGTTCATACTCA
75976192 T
1 T
75976193 GAGTTATACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 7 0.39
18 11 0.61
ACGTcount: A:0.35, C:0.27, G:0.08, T:0.30
Consensus pattern (19 bp):
TACCAAGAGTTCATACTCA
Found at i:75978895 original size:21 final size:21
Alignment explanation
Indices: 75978871--75978910 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
75978861 TGCCTAAGAC
75978871 ATGAATTGGACTAAATTGAGT
1 ATGAATTGGACTAAATTGAGT
* *
75978892 ATGAATTGTATTAAATTGA
1 ATGAATTGGACTAAATTGA
75978911 TGTTAAATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.40, C:0.03, G:0.20, T:0.38
Consensus pattern (21 bp):
ATGAATTGGACTAAATTGAGT
Found at i:75981404 original size:59 final size:59
Alignment explanation
Indices: 75981307--75981433 Score: 238
Period size: 59 Copynumber: 2.2 Consensus size: 59
75981297 TCAAAGGCAT
75981307 ATTAA-AACTATATAACCAAATGCTCATAGACTAACATACATATTCTCATAATTCCAAC
1 ATTAACAACTATATAACCAAATGCTCATAGACTAACATACATATTCTCATAATTCCAAC
*
75981365 TTTAACAACTATATAACCAAATGCTCATAGACTAACATACATATTCTCATAATTCCAAC
1 ATTAACAACTATATAACCAAATGCTCATAGACTAACATACATATTCTCATAATTCCAAC
75981424 ATTAACAACT
1 ATTAACAACT
75981434 CATACCTATA
Statistics
Matches: 66, Mismatches: 2, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
58 4 0.06
59 62 0.94
ACGTcount: A:0.44, C:0.23, G:0.03, T:0.30
Consensus pattern (59 bp):
ATTAACAACTATATAACCAAATGCTCATAGACTAACATACATATTCTCATAATTCCAAC
Found at i:75981430 original size:29 final size:29
Alignment explanation
Indices: 75981338--75981430 Score: 84
Period size: 29 Copynumber: 3.2 Consensus size: 29
75981328 GCTCATAGAC
*
75981338 TAACATACATATTCTCATAATTCCAACTT
1 TAACATACATATTCTCATAATTCCAACAT
* * * *
75981367 TAACA-ACTATATAAC-CA-AATGCTCATAGAC
1 TAACATAC-ATAT-TCTCATAATTC-CA-ACAT
75981397 TAACATACATATTCTCATAATTCCAACAT
1 TAACATACATATTCTCATAATTCCAACAT
75981426 TAACA
1 TAACA
75981431 ACTCATACCT
Statistics
Matches: 48, Mismatches: 9, Indels: 14
0.68 0.13 0.20
Matches are distributed among these distances:
28 6 0.12
29 21 0.44
30 15 0.31
31 6 0.12
ACGTcount: A:0.43, C:0.24, G:0.02, T:0.31
Consensus pattern (29 bp):
TAACATACATATTCTCATAATTCCAACAT
Found at i:75984566 original size:56 final size:55
Alignment explanation
Indices: 75984480--75984904 Score: 521
Period size: 56 Copynumber: 7.6 Consensus size: 55
75984470 TGGTTACAGT
* * * * **
75984480 CTTACTCGTACATATATATCGGAATCACATATCGTTGCCAACGTATTAAATTTGGA
1 CTTACTCGCACACATATATC-AAATCACATATCGATGCCAACGTATTAAACGTGGA
* *
75984536 CTTACTCGCACACATATATCAAAGTCACATATCGATGCCAACATATGT-AATGTGGA
1 CTTACTCGCACACATATATCAAA-TCACATATCGATGCCAACGTAT-TAAACGTGGA
* * * *
75984592 CTTACTTGCACACATGTATCGGAATCACATATCGATGCCAACGTATTAAACGTGGT
1 CTTACTCGCACACATATATC-AAATCACATATCGATGCCAACGTATTAAACGTGGA
* *
75984648 CTTACTCGCACACATATGTCAGAATCACATATCGATGCCAACGTATTAAACGTGGT
1 CTTACTCGCACACATATATCA-AATCACATATCGATGCCAACGTATTAAACGTGGA
* *
75984704 CTTACTCGCACACATATGTCAGAATCACATATCGATGCCAACATATTAAACGTGGA
1 CTTACTCGCACACATATATCA-AATCACATATCGATGCCAACGTATTAAACGTGGA
* * * *
75984760 GTTACTCGTACACATATATCAGAGTCACATATCGATGCCAACGTATGT-AATGTGGA
1 CTTACTCGCACACATATATCA-AATCACATATCGATGCCAACGTAT-TAAACGTGGA
* * *
75984816 CTTACTCGCAGACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGT
1 CTTACTCGCACACATATATC-AAATCACATATCGATGCCAACGTATTAAACGTGGA
* *
75984872 CTTACTCACACACATATATCAGAGTCACATATC
1 CTTACTCGCACACATATATCA-AATCACATATC
75984905 AATGTCACAT
Statistics
Matches: 325, Mismatches: 35, Indels: 18
0.86 0.09 0.05
Matches are distributed among these distances:
55 4 0.01
56 317 0.98
57 4 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (55 bp):
CTTACTCGCACACATATATCAAATCACATATCGATGCCAACGTATTAAACGTGGA
Found at i:75984677 original size:112 final size:112
Alignment explanation
Indices: 75984480--75984904 Score: 620
Period size: 112 Copynumber: 3.8 Consensus size: 112
75984470 TGGTTACAGT
* * * **
75984480 CTTACTCGTACATATATATCGGAATCACATATCGTTGCCAACGTATTAAATTTGGACTTACTCGC
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
*
75984545 ACACATATATCA-AAGTCACATATCGATGCCAACATATGTAATGTGGA
66 ACACATATATCAGAA-TCACATATCGATGCCAACGTATGTAATGTGGA
* * *
75984592 CTTACTTGCACACATGTATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGC
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
* * *
75984657 ACACATATGTCAGAATCACATATCGATGCCAACGTAT-TAAACGTGGT
66 ACACATATATCAGAATCACATATCGATGCCAACGTATGT-AATGTGGA
* * * * *
75984704 CTTACTCGCACACATATGTCAGAATCACATATCGATGCCAACATATTAAACGTGGAGTTACTCGT
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
*
75984769 ACACATATATCAGAGTCACATATCGATGCCAACGTATGTAATGTGGA
66 ACACATATATCAGAATCACATATCGATGCCAACGTATGTAATGTGGA
* * *
75984816 CTTACTCGCAGACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCAC
1 CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
*
75984881 ACACATATATCAGAGTCACATATC
66 ACACATATATCAGAATCACATATC
75984905 AATGTCACAT
Statistics
Matches: 278, Mismatches: 32, Indels: 6
0.88 0.10 0.02
Matches are distributed among these distances:
111 1 0.00
112 274 0.99
113 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (112 bp):
CTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGACTTACTCGC
ACACATATATCAGAATCACATATCGATGCCAACGTATGTAATGTGGA
Found at i:75984790 original size:168 final size:168
Alignment explanation
Indices: 75984478--75984904 Score: 617
Period size: 168 Copynumber: 2.5 Consensus size: 168
75984468 CATGGTTACA
* * * ** *
75984478 GTCTTACTCGTACATATATATCGGAATCACATATCGTTGCCAACGTATTAAATTTGGACTTACTC
1 GTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
* *
75984543 GCACACATATATCA-AAGTCACATATCGATGCCAACATATGTAATGTGGACTTACTTGCACACAT
66 GCACACATATATCAGAA-TCACATATCGATGCCAACATATGTAACGTGGACTTACTCGCACACAT
* *
75984607 GTATCGGAATCACATATCGATGCCAACGTAT-TAAACGTG
130 ATATCAGAATCACATATCGATGCCAACGTATGT-AACGTG
* *
75984646 GTCTTACTCGCACACATATGTCAGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
1 GTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
* * *
75984711 GCACACATATGTCAGAATCACATATCGATGCCAACATAT-TAAACGTGGAGTTACTCGTACACAT
66 GCACACATATATCAGAATCACATATCGATGCCAACATATGT-AACGTGGACTTACTCGCACACAT
* *
75984775 ATATCAGAGTCACATATCGATGCCAACGTATGTAATGTG
130 ATATCAGAATCACATATCGATGCCAACGTATGTAACGTG
* *
75984814 GACTTACTCGCAGACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
1 GTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
* *
75984879 ACACACATATATCAGAGTCACATATC
66 GCACACATATATCAGAATCACATATC
75984905 AATGTCACAT
Statistics
Matches: 232, Mismatches: 24, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
167 1 0.00
168 228 0.98
169 3 0.01
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (168 bp):
GTCTTACTCGCACACATATATCGGAATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTC
GCACACATATATCAGAATCACATATCGATGCCAACATATGTAACGTGGACTTACTCGCACACATA
TATCAGAATCACATATCGATGCCAACGTATGTAACGTG
Found at i:75987067 original size:148 final size:148
Alignment explanation
Indices: 75986895--75987190 Score: 574
Period size: 148 Copynumber: 2.0 Consensus size: 148
75986885 TACCATCCTG
*
75986895 TATATAATATACATTCTTATATTAACTAGAACTAGACATGCTAAATCTTATTCTCATTTTATACC
1 TATATAATATACATTCTTACATTAACTAGAACTAGACATGCTAAATCTTATTCTCATTTTATACC
75986960 ATCATAACGTAGTTACCAATTTGTCCATTAAACATCCATATTCAAGGCAACATTACTCATTTCCA
66 ATCATAACGTAGTTACCAATTTGTCCATTAAACATCCATATTCAAGGCAACATTACTCATTTCCA
75987025 TTTAATTCATGATCCACT
131 TTTAATTCATGATCCACT
75987043 TATATAATATACATTCTTACATTAACTAGAACTAGACATGCTAAATCTTATTCTCATTTTATACC
1 TATATAATATACATTCTTACATTAACTAGAACTAGACATGCTAAATCTTATTCTCATTTTATACC
*
75987108 ATCATAATGTAGTTACCAATTTGTCCATTAAACATCCATATTCAAGGCAACATTACTCATTTCCA
66 ATCATAACGTAGTTACCAATTTGTCCATTAAACATCCATATTCAAGGCAACATTACTCATTTCCA
75987173 TTTAATTCATGATCCACT
131 TTTAATTCATGATCCACT
75987191 GGCCTGCATT
Statistics
Matches: 146, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
148 146 1.00
ACGTcount: A:0.35, C:0.21, G:0.06, T:0.38
Consensus pattern (148 bp):
TATATAATATACATTCTTACATTAACTAGAACTAGACATGCTAAATCTTATTCTCATTTTATACC
ATCATAACGTAGTTACCAATTTGTCCATTAAACATCCATATTCAAGGCAACATTACTCATTTCCA
TTTAATTCATGATCCACT
Found at i:75988497 original size:49 final size:49
Alignment explanation
Indices: 75988428--75988723 Score: 331
Period size: 51 Copynumber: 5.9 Consensus size: 49
75988418 TAGCCAAAGC
* * *
75988428 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * * *
75988477 TATCCAGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC-AAT
* ** * *
75988527 CATTTGATACACATAGTAGCCTGCACTTAGTACTACACATGTGATCAAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * * *
75988578 TATCGGGTACGCATAGTAGCCTGCACTTAGTCCTACACATGTGATCAAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGA-CCAA-T
* * *
75988629 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
* * * * *
75988678 AATTCGGTACACGTAGTAGCGTGCACTTAGTACTACACACGTGACC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACC
75988724 TCACAATAGA
Statistics
Matches: 211, Mismatches: 33, Indels: 6
0.84 0.13 0.02
Matches are distributed among these distances:
49 79 0.37
50 44 0.21
51 88 0.42
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACATGTGACCAAT
Found at i:75992088 original size:48 final size:47
Alignment explanation
Indices: 75992028--75992215 Score: 171
Period size: 48 Copynumber: 3.9 Consensus size: 47
75992018 AGGGTGAACT
* * *
75992028 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTTGAG
1 GCCGATGCCATG-TCCAAACATGGTCTTACACTAGCTCACATATTGAC
* * * * ** *
75992076 GCCGATGGCATGTCCTAGACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCC-AAACATGGTCTTACACTAGCTCACATATTGAC
* * * * *
75992124 GCC-AGTGCCAAGTCCAAGACATGGTCTTACACTGGCTCTCATAATGTC
1 GCCGA-TGCCATGTCCAA-ACATGGTCTTACACTAGCTCACATATTGAC
* *
75992172 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATAT
1 GCCGATGCCATGT-CCAAACATGGTCTTACACTAGCTCACATAT
75992216 CACCCAAATG
Statistics
Matches: 111, Mismatches: 24, Indels: 10
0.77 0.17 0.07
Matches are distributed among these distances:
47 5 0.05
48 102 0.92
49 4 0.04
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCAAACATGGTCTTACACTAGCTCACATATTGAC
Found at i:75995693 original size:31 final size:31
Alignment explanation
Indices: 75995655--75995733 Score: 149
Period size: 31 Copynumber: 2.5 Consensus size: 31
75995645 TTTAACGGTT
75995655 ACTGGGCCGAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
75995686 ACTGGGCCGAAGCCTTTTCATAAATCATTTC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
75995717 ACTGGGCCGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
75995734 ACTGTAAACG
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
31 47 1.00
ACGTcount: A:0.25, C:0.27, G:0.19, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:75995979 original size:25 final size:26
Alignment explanation
Indices: 75995951--75996047 Score: 162
Period size: 26 Copynumber: 3.8 Consensus size: 26
75995941 CCTCTTTAAT
75995951 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
75995976 AACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
75996001 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
75996027 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
75996048 GCACTTCCTC
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
25 33 0.49
26 34 0.51
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:75996022 original size:51 final size:51
Alignment explanation
Indices: 75995951--75996047 Score: 178
Period size: 51 Copynumber: 1.9 Consensus size: 51
75995941 CCTCTTTAAT
75995951 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCA-AAGCCCTTTTCAATA
1 AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
75996001 AACTGGGGCATAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
1 AACTGGGGCA-AAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTT
75996048 GCACTTCCTC
Statistics
Matches: 45, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 10 0.22
51 25 0.56
52 10 0.22
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.26
Consensus pattern (51 bp):
AACTGGGGCAAAGCCCTTTTCGGTAAACTGGGGCATAAGCCCTTTTCAATA
Found at i:75996938 original size:27 final size:27
Alignment explanation
Indices: 75996847--75996930 Score: 107
Period size: 27 Copynumber: 3.1 Consensus size: 27
75996837 GGGCATATTC
* * *
75996847 GTCATTTTACCATACAGGGG-TATTACG
1 GTCACTTTACCCTACAGGGGCT-TTATG
*
75996874 GTCACTTTACCCTATAGGGGCTTTATG
1 GTCACTTTACCCTACAGGGGCTTTATG
*
75996901 ATCACTTTACCCTACAGGGGCTTTATG
1 GTCACTTTACCCTACAGGGGCTTTATG
75996928 GTC
1 GTC
75996931 TTTTTACCTA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
27 48 0.98
28 1 0.02
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (27 bp):
GTCACTTTACCCTACAGGGGCTTTATG
Found at i:75997022 original size:27 final size:27
Alignment explanation
Indices: 75996992--75997099 Score: 103
Period size: 27 Copynumber: 3.9 Consensus size: 27
75996982 GTAAATCTAC
75996992 AAACCAAGGGTATTTCAGTAATTTTGT
1 AAACCAAGGGTATTTCAGTAATTTTGT
*
75997019 AAACCAATGGTATTTCTA-TAATTTT-T
1 AAACCAAGGGTATTTC-AGTAATTTTGT
* *
75997045 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCAGTAATTTTGT
* * **
75997075 AAATCAGGGGTATTTTGGTAATTTT
1 AAACCAAGGGTATTTCAGTAATTTT
75997100 ACAAATTGAG
Statistics
Matches: 68, Mismatches: 7, Indels: 12
0.78 0.08 0.14
Matches are distributed among these distances:
26 1 0.01
27 41 0.60
28 7 0.10
29 18 0.26
30 1 0.01
ACGTcount: A:0.31, C:0.08, G:0.19, T:0.42
Consensus pattern (27 bp):
AAACCAAGGGTATTTCAGTAATTTTGT
Found at i:75997097 original size:56 final size:54
Alignment explanation
Indices: 75996989--75997158 Score: 166
Period size: 54 Copynumber: 3.1 Consensus size: 54
75996979 TTGGTAAATC
* * *
75996989 TACAAACCAAGGGTATTTCAGTAATTTTGTAAACCAATGGTATTTCT-ATAATTTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAA-CAGTGGTATTT-TGGTAATTTT
* * *
75997044 TAGAAAGTCAAGGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAA-TTT
1 TACAAA-TCAAGGGTATTTCAGTAATTTTGTAAA-CAGTGGTATTTTGGTAATTTT
** * ***
75997099 TACAAATTGAGGGTATTTCGGTAATTTCACAAACTAGTGGTATTTTGGTAA-TTT
1 TACAAATCAAGGGTATTTCAGTAATTTTGTAAAC-AGTGGTATTTTGGTAATTTT
75997153 TACAAA
1 TACAAA
75997159 CTAGGGGTAT
Statistics
Matches: 97, Mismatches: 15, Indels: 7
0.82 0.13 0.06
Matches are distributed among these distances:
53 1 0.01
54 45 0.46
55 14 0.14
56 37 0.38
ACGTcount: A:0.32, C:0.09, G:0.18, T:0.40
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCAGTAATTTTGTAAACAGTGGTATTTTGGTAATTTT
Found at i:75997105 original size:27 final size:27
Alignment explanation
Indices: 75997041--75997178 Score: 122
Period size: 27 Copynumber: 5.1 Consensus size: 27
75997031 TTTCTATAAT
* *
75997041 TTTTAGAAAGTCAAGGGTATTTCT-GTAA
1 TTTTACAAA-TCAGGGGTATTT-TGGTAA
**
75997069 TTTTGTAAATCAGGGGTATTTTGGTAA
1 TTTTACAAATCAGGGGTATTTTGGTAA
* *
75997096 TTTTACAAAT-TGAGGGTATTTCGGTAA
1 TTTTACAAATCAG-GGGTATTTTGGTAA
* *
75997123 TTTCACAAA-CTAGTGGTATTTTGGTAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
*
75997150 TTTTACAAA-CTAGGGGTATTTTGATAA
1 TTTTACAAATC-AGGGGTATTTTGGTAA
75997177 TT
1 TT
75997179 CTACCCTATA
Statistics
Matches: 92, Mismatches: 14, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.02
27 82 0.89
28 8 0.09
ACGTcount: A:0.30, C:0.07, G:0.21, T:0.42
Consensus pattern (27 bp):
TTTTACAAATCAGGGGTATTTTGGTAA
Found at i:75997229 original size:26 final size:26
Alignment explanation
Indices: 75997198--75997258 Score: 86
Period size: 26 Copynumber: 2.3 Consensus size: 26
75997188 AGGGGTATTT
**
75997198 CAGTAATTTCATTATAGAGGGTAAAA
1 CAGTAATTTCACAATAGAGGGTAAAA
* *
75997224 CGGTAATTTCACAATCGAGGGTAAAA
1 CAGTAATTTCACAATAGAGGGTAAAA
75997250 CAGTAATTT
1 CAGTAATTT
75997259 TGTAAATCAA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.30
Consensus pattern (26 bp):
CAGTAATTTCACAATAGAGGGTAAAA
Found at i:75997309 original size:27 final size:27
Alignment explanation
Indices: 75997214--75997323 Score: 116
Period size: 27 Copynumber: 4.1 Consensus size: 27
75997204 TTTCATTATA
* *
75997214 GAGGGTAAAACGGTAATT-TCA-CAATC
1 GAGGGTAAAACAGTAATTCT-ATAAATC
* *
75997240 GAGGGTAAAACAGTAATTTTGTAAATC
1 GAGGGTAAAACAGTAATTCTATAAATC
* *
75997267 AAGGGTAAGACAGTAATTCTATAAATC
1 GAGGGTAAAACAGTAATTCTATAAATC
** *
75997294 GAGGGTAAAATGGTAATTCTACAAATC
1 GAGGGTAAAACAGTAATTCTATAAATC
75997321 GAG
1 GAG
75997324 AGCATTTCCA
Statistics
Matches: 70, Mismatches: 12, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
26 17 0.24
27 53 0.76
ACGTcount: A:0.41, C:0.11, G:0.23, T:0.25
Consensus pattern (27 bp):
GAGGGTAAAACAGTAATTCTATAAATC
Found at i:76000135 original size:29 final size:29
Alignment explanation
Indices: 76000093--76000152 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
76000083 ATCAGAAGTT
*
76000093 TTGGCACTAAGTGTGTGATTTAAACTAGC
1 TTGGCACTAAGTGTGCGATTTAAACTAGC
76000122 TTGGCACTAAGTGTGCGATTTAAACTAGC
1 TTGGCACTAAGTGTGCGATTTAAACTAGC
76000151 TT
1 TT
76000153 CAGCTATTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.27, C:0.15, G:0.23, T:0.35
Consensus pattern (29 bp):
TTGGCACTAAGTGTGCGATTTAAACTAGC
Found at i:76007451 original size:27 final size:29
Alignment explanation
Indices: 76007419--76007473 Score: 87
Period size: 29 Copynumber: 2.0 Consensus size: 29
76007409 ATCGGAAGTT
*
76007419 TTGGCACT-AA-GTGTGATTTAATCTAGC
1 TTGGCACTAAATGTGTGATTTAAACTAGC
76007446 TTGGCACTAAATGTGTGATTTAAACTAG
1 TTGGCACTAAATGTGTGATTTAAACTAG
76007474 GTTCGGCTAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
27 8 0.32
28 2 0.08
29 15 0.60
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (29 bp):
TTGGCACTAAATGTGTGATTTAAACTAGC
Found at i:76016328 original size:15 final size:15
Alignment explanation
Indices: 76016308--76016340 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
76016298 TCACACACAC
76016308 ATATATCGTTCTCTG
1 ATATATCGTTCTCTG
76016323 ATATATCGTTCTCTG
1 ATATATCGTTCTCTG
76016338 ATA
1 ATA
76016341 CTAATAATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.24, C:0.18, G:0.12, T:0.45
Consensus pattern (15 bp):
ATATATCGTTCTCTG
Found at i:76016590 original size:38 final size:38
Alignment explanation
Indices: 76016507--76016629 Score: 156
Period size: 38 Copynumber: 3.2 Consensus size: 38
76016497 GAATCCAGTC
* * *
76016507 ACCAGCACAAAACCTGCGGGACTTTAAGCTCAGATATAAT
1 ACCAGCACAAAGCCTGCGGGA-TTTAA-CCCGGATATAAT
* *
76016547 ACCAGCACTAGGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
* *
76016585 ACCAGCACAAAGCCTGCGGGAATTAACCCGGATATATT
1 ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
*
76016623 TCCAGCA
1 ACCAGCA
76016630 TATAGCTTGC
Statistics
Matches: 73, Mismatches: 10, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
38 50 0.68
39 5 0.07
40 18 0.25
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (38 bp):
ACCAGCACAAAGCCTGCGGGATTTAACCCGGATATAAT
Found at i:76018912 original size:39 final size:39
Alignment explanation
Indices: 76018801--76018930 Score: 170
Period size: 40 Copynumber: 3.3 Consensus size: 39
76018791 NNNNNNNNNN
* * *
76018801 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGG-CATTGTGCGAGTTACTAAATCCGGGTTATGTC
**
76018841 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATT-GTGCGAGTTACTAAATCCGGGTTATGTC
* * *
76018881 CCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
76018920 CCGAAGGCATT
1 CCGAAGGCATT
76018931 TGAACGAGGA
Statistics
Matches: 79, Mismatches: 10, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
39 37 0.47
40 42 0.53
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTGTGCGAGTTACTAAATCCGGGTTATGTC
Found at i:76025836 original size:36 final size:35
Alignment explanation
Indices: 76025794--76025867 Score: 121
Period size: 36 Copynumber: 2.1 Consensus size: 35
76025784 GTGCGAGGTA
* *
76025794 ACAGGGACGTGTTAGGTTTGAAATATTTTAATCAC
1 ACAGGGACGTGTTAGGTTTGAAACAGTTTAATCAC
76025829 ACNAGGGACGTGTTAGGTTTGAAACAGTTTAATCAC
1 AC-AGGGACGTGTTAGGTTTGAAACAGTTTAATCAC
76025865 ACA
1 ACA
76025868 AATCTAAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
35 3 0.08
36 33 0.92
ACGTcount: A:0.32, C:0.14, G:0.23, T:0.30
Consensus pattern (35 bp):
ACAGGGACGTGTTAGGTTTGAAACAGTTTAATCAC
Found at i:76031014 original size:56 final size:56
Alignment explanation
Indices: 76030921--76031078 Score: 205
Period size: 56 Copynumber: 2.8 Consensus size: 56
76030911 TCTTACATGT
* * *
76030921 AATCACATATCGATGCC-AC-TATCCTAGACAG-GATCTTACTCGCACACATAAATCAG
1 AATCACATATCGATGCCAACGTAT--TAAAC-GTGGTCTTACTCGCACACACAAATCAG
* *
76030977 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTTGCACACACATATCAG
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACAAATCAG
* *
76031033 AATCACATATTGATGCCAACGTATTAAACGTGGACTTACTCGCACA
1 AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACA
76031079 TATGTATTGA
Statistics
Matches: 91, Mismatches: 8, Indels: 6
0.87 0.08 0.06
Matches are distributed among these distances:
55 1 0.01
56 85 0.93
57 2 0.02
58 3 0.03
ACGTcount: A:0.35, C:0.26, G:0.14, T:0.25
Consensus pattern (56 bp):
AATCACATATCGATGCCAACGTATTAAACGTGGTCTTACTCGCACACACAAATCAG
Found at i:76031721 original size:15 final size:15
Alignment explanation
Indices: 76031698--76031727 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
76031688 TCAAAAAACC
76031698 TAATACAAAACATAT
1 TAATACAAAACATAT
*
76031713 TAATCCAAAACATAT
1 TAATACAAAACATAT
76031728 CTTTCATAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.57, C:0.17, G:0.00, T:0.27
Consensus pattern (15 bp):
TAATACAAAACATAT
Found at i:76033102 original size:48 final size:48
Alignment explanation
Indices: 76033031--76033300 Score: 301
Period size: 48 Copynumber: 5.6 Consensus size: 48
76033021 GTGAACTGCT
* * * * *
76033031 GATGCCATGTTCCAAACATGGTCTTCCACTAGCTCTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
* * * * *
76033079 GATGCCATGTCCTAGACATGGTCTTACACTAGCGCACATATTAATACC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
* * * *
76033127 GATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCGTCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
* * * * *
76033175 GATGTCATGTCCCAGACATGATCTTACACTAGCACACATATTAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
* * *
76033223 GTTGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATA--ATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCA-AT-GCC
*
76033271 GATGCCATGTCCCAGACATAGTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
76033301 GCACACATAT
Statistics
Matches: 184, Mismatches: 36, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
46 1 0.01
47 1 0.01
48 182 0.99
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.29
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCAATGCC
Found at i:76033200 original size:96 final size:94
Alignment explanation
Indices: 76033031--76033310 Score: 363
Period size: 96 Copynumber: 2.9 Consensus size: 94
76033021 GTGAACTGCT
* *
76033031 GATGCCATGTTCCAAACATGGTCTTCCACTAGCTCTCGTCTCAATGCCGATGCCATGTCCTAGAC
1 GATGCCATG-TCCAAACATGGTCTTACACTAGCT-TCGTCTCAATGCCGATGCCATGTCCCAGAC
* *
76033096 ATGGTCTTACACTAGCGCACATATTAATACC
64 ATGATCTTACACTAGCACACATATTAATACC
* *
76033127 GATGCCATGTCCTAGACATGGTCTTACACTAGCTTTCGTCTCAATGCCGATGTCATGTCCCAGAC
1 GATGCCATGTCC-AAACATGGTCTTACACTAGC-TTCGTCTCAATGCCGATGCCATGTCCCAGAC
*
76033192 ATGATCTTACACTAGCACACATATTAATGCC
64 ATGATCTTACACTAGCACACATATTAATACC
*
76033223 GTTGCCATGTCCCAAACATGGTCTTACACTAGC-TC-TCAT-AATGTGGCCGATGCCATGTCCCA
1 GATGCCATGT-CCAAACATGGTCTTACACTAGCTTCGTC-TCAA--T-GCCGATGCCATGTCCCA
76033285 GACAT-AGTCTTACACT-GCACACATAT
61 GACATGA-TCTTACACTAGCACACATAT
76033311 CACCCAAATG
Statistics
Matches: 166, Mismatches: 10, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
93 4 0.02
94 3 0.02
95 15 0.09
96 141 0.85
97 3 0.02
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (94 bp):
GATGCCATGTCCAAACATGGTCTTACACTAGCTTCGTCTCAATGCCGATGCCATGTCCCAGACAT
GATCTTACACTAGCACACATATTAATACC
Found at i:76036124 original size:9 final size:9
Alignment explanation
Indices: 76036110--76036136 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
76036100 CTTTGGAATC
76036110 GAATAAATT
1 GAATAAATT
76036119 GAATAAATT
1 GAATAAATT
76036128 GAATAAATT
1 GAATAAATT
76036137 TTATTTTCGA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.56, C:0.00, G:0.11, T:0.33
Consensus pattern (9 bp):
GAATAAATT
Found at i:76036864 original size:16 final size:17
Alignment explanation
Indices: 76036843--76036874 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
76036833 AAGCATTGGC
76036843 TTCATGAT-ATTATGAG
1 TTCATGATCATTATGAG
76036859 TTCATGATCATTATGA
1 TTCATGATCATTATGA
76036875 AAGTGACCTT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.31, C:0.09, G:0.16, T:0.44
Consensus pattern (17 bp):
TTCATGATCATTATGAG
Found at i:76038566 original size:26 final size:26
Alignment explanation
Indices: 76038537--76038633 Score: 95
Period size: 27 Copynumber: 3.7 Consensus size: 26
76038527 TTAGTTTACC
*
76038537 AAATTACTAAAATACCCACAGTTGTA
1 AAATTACCAAAATACCCACAGTTGTA
* * *
76038563 AAATTACCAAAGTACCCCCAGTTTATA
1 AAATTACCAAAATACCCACAG-TTGTA
* * * *
76038590 AAATTACCCAAATATCCTCGATTTGTA
1 AAATTACCAAAATACCCAC-AGTTGTA
*
76038617 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
76038634 TCACTTTGCA
Statistics
Matches: 57, Mismatches: 12, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
26 18 0.32
27 38 0.67
28 1 0.02
ACGTcount: A:0.42, C:0.24, G:0.07, T:0.27
Consensus pattern (26 bp):
AAATTACCAAAATACCCACAGTTGTA
Found at i:76038635 original size:27 final size:27
Alignment explanation
Indices: 76038558--76038691 Score: 107
Period size: 27 Copynumber: 4.9 Consensus size: 27
76038548 ATACCCACAG
* *
76038558 TTGTAAAATTACCAAAGTACCC-CCAGT
1 TTGTAAAATTACCAAA-TACCCTCGACT
* *
76038585 TTATAAAATTACCCAAATATCCTCGA-T
1 TTGTAAAATTA-CCAAATACCCTCGACT
76038612 TTGTAAAATTACCGAAATACCCTC-ACT
1 TTGTAAAATTACC-AAATACCCTCGACT
* * *
76038639 TTGCAAACTTACTGC-AATACCCTCAAC-
1 TTGTAAAATTAC--CAAATACCCTCGACT
*
76038666 TTGTAAAATTATCAAAGTACCCTCGA
1 TTGTAAAATTACCAAA-TACCCTCGA
76038692 ATTACAAAAT
Statistics
Matches: 87, Mismatches: 11, Indels: 18
0.75 0.09 0.16
Matches are distributed among these distances:
25 1 0.01
26 5 0.06
27 71 0.82
28 9 0.10
29 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.08, T:0.29
Consensus pattern (27 bp):
TTGTAAAATTACCAAATACCCTCGACT
Found at i:76038705 original size:54 final size:53
Alignment explanation
Indices: 76038531--76038706 Score: 151
Period size: 54 Copynumber: 3.3 Consensus size: 53
76038521 AATACTTTAG
* * * * * *
76038531 TTTACCAAATTACTAAAATACCCACAGTTGTAAAATTACCAAAGTACCCCCAG
1 TTTACAAAATTACTACAATACCCTCACTTGTAAAATTACCAAAGTACCCTCAC
* * * *
76038584 TTTATAAAATTAC-CCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTCAC
1 TTTACAAAATTACTAC-AATACCCTC-ACTTGTAAAATTACC-AAAGTACCCTCAC
* * * *
76038638 TTTGCAAACTTACTGCAATACCCTCAACTTGTAAAATTATCAAAGTACCCTCGA-
1 TTTACAAAATTACTACAATACCCTC-ACTTGTAAAATTACCAAAGTACCCTC-AC
*
76038692 ATTACAAAATTACTA
1 TTTACAAAATTACTA
76038707 TTTTACCCTC
Statistics
Matches: 96, Mismatches: 21, Indels: 11
0.75 0.16 0.09
Matches are distributed among these distances:
53 21 0.22
54 70 0.73
55 5 0.05
ACGTcount: A:0.40, C:0.24, G:0.07, T:0.29
Consensus pattern (53 bp):
TTTACAAAATTACTACAATACCCTCACTTGTAAAATTACCAAAGTACCCTCAC
Found at i:76038713 original size:27 final size:27
Alignment explanation
Indices: 76038683--76038986 Score: 367
Period size: 27 Copynumber: 11.2 Consensus size: 27
76038673 ATTATCAAAG
* *
76038683 TACCCTCGAATTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
76038710 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
76038737 TACCCTCGATTTATAAAAATTACTATTT
1 TACCCTCGATTTA-CAGAATTACTATTT
* * *
76038765 TACCCTTGATTGACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
76038792 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
*
76038819 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * * *
76038846 TACCCTCGATTGATAGAATTATTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
76038873 TACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTATTT
* * *
76038900 TACTCTCGATTTATAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTATTT
* *
76038927 TACCCTTGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTACAGAATTACT-ATTT
* * *
76038954 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTATTT
76038981 TACCCT
1 TACCCT
76038987 TAGGGTGTTA
Statistics
Matches: 241, Mismatches: 33, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 1 0.00
27 218 0.90
28 22 0.09
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.42
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTATTT
Found at i:76038987 original size:54 final size:54
Alignment explanation
Indices: 76038683--76038986 Score: 430
Period size: 54 Copynumber: 5.6 Consensus size: 54
76038673 ATTATCAAAG
* * * *
76038683 TACCCTCGAATTACAAAATTACTATTTTACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
* *
76038737 TACCCTCGATTTATAAAAATTACTATTTTACCCTTGATTGACAGAATTACTGTTT
1 TACCCTCGATTTAT-AAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
* *
76038792 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
* * * * * *
76038846 TACCCTCGATTGATAGAATTATTGTTTTACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
* *
76038900 TACTCTCGATTTATAAAATTACTATTTTACCCTTGATTTACAGAATTA-TCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACT-GTTT
*
76038954 TACCCTCGATTTATAAAATTACCATTTTACCCT
1 TACCCTCGATTTATAAAATTACTATTTTACCCT
76038987 TAGGGTGTTA
Statistics
Matches: 222, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
53 1 0.00
54 172 0.77
55 49 0.22
ACGTcount: A:0.30, C:0.20, G:0.09, T:0.42
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACTGTTT
Found at i:76039347 original size:18 final size:18
Alignment explanation
Indices: 76039319--76039353 Score: 54
Period size: 19 Copynumber: 1.9 Consensus size: 18
76039309 TATATATCTG
76039319 TTCTTAGTTCTGATAATGT
1 TTCTTAGTTCTG-TAATGT
76039338 TTCTTA-TTCTGTAATG
1 TTCTTAGTTCTGTAATG
76039354 GGCTAAGGCT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 5 0.31
19 6 0.38
ACGTcount: A:0.20, C:0.11, G:0.14, T:0.54
Consensus pattern (18 bp):
TTCTTAGTTCTGTAATGT
Found at i:76041146 original size:20 final size:19
Alignment explanation
Indices: 76041121--76041163 Score: 68
Period size: 19 Copynumber: 2.2 Consensus size: 19
76041111 ACGGCCTACT
76041121 ACACGGGCGTGTCCCAAGCC
1 ACAC-GGCGTGTCCCAAGCC
*
76041141 ACACGGTGTGTCCCAAGCC
1 ACACGGCGTGTCCCAAGCC
76041160 ACAC
1 ACAC
76041164 AGGTGTGTGA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
19 18 0.82
20 4 0.18
ACGTcount: A:0.23, C:0.40, G:0.26, T:0.12
Consensus pattern (19 bp):
ACACGGCGTGTCCCAAGCC
Found at i:76041153 original size:19 final size:20
Alignment explanation
Indices: 76041129--76041171 Score: 79
Period size: 19 Copynumber: 2.2 Consensus size: 20
76041119 CTACACGGGC
76041129 GTGTCCCAAGCCACAC-GGT
1 GTGTCCCAAGCCACACAGGT
76041148 GTGTCCCAAGCCACACAGGT
1 GTGTCCCAAGCCACACAGGT
76041168 GTGT
1 GTGT
76041172 GACCCCTATT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 16 0.70
20 7 0.30
ACGTcount: A:0.21, C:0.33, G:0.28, T:0.19
Consensus pattern (20 bp):
GTGTCCCAAGCCACACAGGT
Found at i:76046404 original size:40 final size:40
Alignment explanation
Indices: 76046305--76046407 Score: 102
Period size: 40 Copynumber: 2.6 Consensus size: 40
76046295 GCTACTCGTT
* * * *
76046305 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATCCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
* * * *
76046345 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATCCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TAGCA
76046386 CAAA-CCCTTCGGGACTTAGCCC
1 CAAATCCCTTCGGGACTTAGCCC
76046408 TGACTTCATT
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
39 3 0.06
40 38 0.73
41 11 0.21
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATCCCTTCGGGACTTAGCCCGGATATAGTAACTAGCA
Found at i:76058850 original size:27 final size:27
Alignment explanation
Indices: 76058820--76058874 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
76058810 TAGTCCATTC
*
76058820 AACTCTTACATATTTTCTGTAATAACT
1 AACTCTTACATATTTTCTATAATAACT
*
76058847 AACTCTTACATCTTTTCTATAATAACT
1 AACTCTTACATATTTTCTATAATAACT
76058874 A
1 A
76058875 TGTCATCAAT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.35, C:0.20, G:0.02, T:0.44
Consensus pattern (27 bp):
AACTCTTACATATTTTCTATAATAACT
Found at i:76061159 original size:37 final size:37
Alignment explanation
Indices: 76061109--76061187 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
76061099 TTATTACGAA
* * *
76061109 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
76061146 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
76061183 GTCTT
1 GTCTT
76061188 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:76061384 original size:25 final size:25
Alignment explanation
Indices: 76061356--76061434 Score: 67
Period size: 25 Copynumber: 3.3 Consensus size: 25
76061346 ACTCGGCCCT
*
76061356 ATCACATATATACACTTTTACATTC
1 ATCACATATATACACTTTCACATTC
* * * * *
76061381 ATCAC--AT-TGCCCATTCGGCCTT-
1 ATCACATATATACACTTTC-ACATTC
76061403 ATCACATATATACACTTTCACATTC
1 ATCACATATATACACTTTCACATTC
76061428 ATCACAT
1 ATCACAT
76061435 CGGCCATTAG
Statistics
Matches: 38, Mismatches: 11, Indels: 10
0.64 0.19 0.17
Matches are distributed among these distances:
22 10 0.26
23 5 0.13
24 5 0.13
25 18 0.47
ACGTcount: A:0.32, C:0.29, G:0.04, T:0.35
Consensus pattern (25 bp):
ATCACATATATACACTTTCACATTC
Found at i:76061384 original size:47 final size:47
Alignment explanation
Indices: 76061306--76061937 Score: 1066
Period size: 47 Copynumber: 13.4 Consensus size: 47
76061296 CCCTTCGGGA
* * * * * * *
76061306 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * * * * *
76061353 CCTATCACATATATACACTTTTACATTCATCACATTGCCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
76061400 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061447 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* *
76061494 CTTATCACATATATACACTTTCACATTCACCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
* * *
76061541 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061590 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061637 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061684 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061731 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061778 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061825 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
*
76061872 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
76061919 CTTATCACATATATACACT
1 CTTATCACATATATACACT
76061938 CACATCACAA
Statistics
Matches: 561, Mismatches: 22, Indels: 4
0.96 0.04 0.01
Matches are distributed among these distances:
47 517 0.92
49 44 0.08
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
Found at i:76069183 original size:16 final size:15
Alignment explanation
Indices: 76069149--76069178 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
76069139 TATTTTTTCT
76069149 ATTTATTATGTGTGA
1 ATTTATTATGTGTGA
76069164 ATTTA-TATGTGTGA
1 ATTTATTATGTGTGA
76069178 A
1 A
76069179 AATTTCATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 10 0.67
15 5 0.33
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (15 bp):
ATTTATTATGTGTGA
Found at i:76069918 original size:43 final size:42
Alignment explanation
Indices: 76069870--76070002 Score: 155
Period size: 43 Copynumber: 3.1 Consensus size: 42
76069860 TCTGGGATAG
*
76069870 TGGCATCGATACGTGATTACATGTAAGACCATGTTTGAGACAT
1 TGGCATCGATATGTGATTACATGTAAGACCATGTTTG-GACAT
* * *
76069913 CGGCATCG-TATTTGATT-CATGTAAGACCCTGTTTGGA-AT
1 TGGCATCGATATGTGATTACATGTAAGACCATGTTTGGACAT
* *
76069952 AGTGGTATCGATATGTGATTACATGTAAGACCACGTTTGGGACAT
1 --TGGCATCGATATGTGATTACATGTAAGACCATGTTT-GGACAT
76069997 TGGCAT
1 TGGCAT
76070003 TGTACGATAT
Statistics
Matches: 74, Mismatches: 10, Indels: 12
0.77 0.10 0.12
Matches are distributed among these distances:
39 2 0.03
40 2 0.03
41 23 0.31
42 15 0.20
43 27 0.36
44 3 0.04
45 2 0.03
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (42 bp):
TGGCATCGATATGTGATTACATGTAAGACCATGTTTGGACAT
Found at i:76069990 original size:84 final size:84
Alignment explanation
Indices: 76069845--76070002 Score: 244
Period size: 84 Copynumber: 1.9 Consensus size: 84
76069835 ATATGTGTTC
* *
76069845 TCATGTAAGACCCTATCTGGGATAGTGGCATCGATACGTGATTACATGTAAGACCATGTTTGAGA
1 TCATGTAAGACCCTATCTGGAATAGTGGCATCGATACGTGATTACATGTAAGACCACGTTTGAGA
76069910 CATCGGCATCGTATTTGAT
66 CATCGGCATCGTATTTGAT
* * * * *
76069929 TCATGTAAGACCCTGTTTGGAATAGTGGTATCGATATGTGATTACATGTAAGACCACGTTTGGGA
1 TCATGTAAGACCCTATCTGGAATAGTGGCATCGATACGTGATTACATGTAAGACCACGTTTGAGA
*
76069994 CATTGGCAT
66 CATCGGCAT
76070003 TGTACGATAT
Statistics
Matches: 66, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
84 66 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (84 bp):
TCATGTAAGACCCTATCTGGAATAGTGGCATCGATACGTGATTACATGTAAGACCACGTTTGAGA
CATCGGCATCGTATTTGAT
Found at i:76070196 original size:19 final size:18
Alignment explanation
Indices: 76070172--76070215 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
76070162 GATACAAATT
76070172 ATATATGATGCAAATGAAA
1 ATATATG-TGCAAATGAAA
* *
76070191 ATATATGTGTATATGAAA
1 ATATATGTGCAAATGAAA
76070209 AGTATAT
1 A-TATAT
76070216 TCAGTGAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
ATATATGTGCAAATGAAA
Found at i:76074383 original size:33 final size:32
Alignment explanation
Indices: 76074339--76074412 Score: 94
Period size: 33 Copynumber: 2.3 Consensus size: 32
76074329 GCTGAGTATG
* * *
76074339 AAAGAGAGTTTGTTCGGCTCAGCAAGCATGCT
1 AAAGAGTGTTTGTTCAGCTCAGAAAGCATGCT
*
76074371 AAAAGAGTGTTTGTTCAGCTCAGAAAGTATGCT
1 -AAAGAGTGTTTGTTCAGCTCAGAAAGCATGCT
*
76074404 AGAGAGTGT
1 AAAGAGTGT
76074413 GTTTCCTTCA
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
32 8 0.22
33 28 0.78
ACGTcount: A:0.31, C:0.14, G:0.28, T:0.27
Consensus pattern (32 bp):
AAAGAGTGTTTGTTCAGCTCAGAAAGCATGCT
Found at i:76102187 original size:36 final size:36
Alignment explanation
Indices: 76102147--76102219 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
76102137 GCTTCTGATC
*
76102147 AATAAATCTCTGACTAATATATTTCTTACGGAACTT
1 AATAAATCTCTGACTAATATATTTCTTACAGAACTT
*
76102183 AATAAATCTCTGACTGATATATTTCTTACAGAACTT
1 AATAAATCTCTGACTAATATATTTCTTACAGAACTT
76102219 A
1 A
76102220 GTCTAAAAGA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.37, C:0.16, G:0.08, T:0.38
Consensus pattern (36 bp):
AATAAATCTCTGACTAATATATTTCTTACAGAACTT
Found at i:76111712 original size:12 final size:12
Alignment explanation
Indices: 76111695--76111724 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
76111685 CCACACGCCC
76111695 ATGTGCCAGGCT
1 ATGTGCCAGGCT
76111707 ATGTGCCAGGCT
1 ATGTGCCAGGCT
76111719 ATGTGC
1 ATGTGC
76111725 TATGTTGTGT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.17, C:0.23, G:0.33, T:0.27
Consensus pattern (12 bp):
ATGTGCCAGGCT
Found at i:76112601 original size:35 final size:35
Alignment explanation
Indices: 76112562--76112646 Score: 100
Period size: 35 Copynumber: 2.4 Consensus size: 35
76112552 GCTAATCCCT
* *
76112562 CTAAAACACAACAATGTTCA-TATGAGCTAGTCCAA
1 CTAAAACACAACAAAGTTCATTA-GAACTAGTCCAA
* *
76112597 CTAAAACACACCAAAGTTCATTAGAACTAGTCGAA
1 CTAAAACACAACAAAGTTCATTAGAACTAGTCCAA
* *
76112632 CTGAAACACACCAAA
1 CTAAAACACAACAAA
76112647 AAAAGTGTAT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
35 42 0.95
36 2 0.05
ACGTcount: A:0.46, C:0.25, G:0.11, T:0.19
Consensus pattern (35 bp):
CTAAAACACAACAAAGTTCATTAGAACTAGTCCAA
Found at i:76118979 original size:71 final size:67
Alignment explanation
Indices: 76118863--76119016 Score: 200
Period size: 67 Copynumber: 2.2 Consensus size: 67
76118853 CAGAAATTTA
* * * * *
76118863 CAGCGAGGCTGCCAGATATTTTGGCTAGGCCACCAGAATAGATATATATATGTGGCGAAGCCACC
1 CAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAG----ATATATGTGGCGAAGCCACC
76118928 AGATTG
62 AGATTG
* * *
76118934 CAGCGAGGCTGCTAGATATTGTGACGAAGTCACCAGAACAGATATATGTGGCGAGGCCACCAGAT
1 CAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGAT
76118999 TG
66 TG
76119001 CAGCGAGGCTGCCAGA
1 CAGCGAGGCTGCCAGA
76119017 ACGCTTCCTC
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
67 40 0.54
71 34 0.46
ACGTcount: A:0.29, C:0.22, G:0.29, T:0.19
Consensus pattern (67 bp):
CAGCGAGGCTGCCAGATATTGTGACGAAGCCACCAGAACAGATATATGTGGCGAAGCCACCAGAT
TG
Found at i:76118994 original size:27 final size:26
Alignment explanation
Indices: 76118947--76118997 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
76118937 CGAGGCTGCT
*
76118947 AGATATTGTGACGAAGTCACCAGAAC
1 AGATATTGTGACGAAGCCACCAGAAC
* *
76118973 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
76118998 TTGCAGCGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.20, G:0.27, T:0.18
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAC
Found at i:76119272 original size:27 final size:27
Alignment explanation
Indices: 76119243--76119493 Score: 224
Period size: 27 Copynumber: 9.3 Consensus size: 27
76119233 GGGCAAAATG
* * * *
76119243 GTAATTTTACCCCACAAGGGTATCTCG
1 GTAATTTTACCCTACAGGGGTATTTCA
* * * *
76119270 GTAAGTCTACCCTATAGGGGTATTTTA
1 GTAATTTTACCCTACAGGGGTATTTCA
* *
76119297 GTAATTCTACCTTACAGGGGTATTTCA
1 GTAATTTTACCCTACAGGGGTATTTCA
*
76119324 GT-ATTTCTACCCTACAAGGGTATTTC-
1 GTAATTT-TACCCTACAGGGGTATTTCA
* * *
76119350 GTTAATTCTACCCTATAGGGGTATTTTA
1 G-TAATTTTACCCTACAGGGGTATTTCA
* * *
76119378 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTTTACCCTACAGGGGTATTTCA
*
76119405 GT-ATTTCTACCCTACAGGGGTATTTTA
1 GTAATTT-TACCCTACAGGGGTATTTCA
* * *
76119432 GT-ATTTGTATCCTACAAGGGTATTTCG
1 GTAATTT-TACCCTACAGGGGTATTTCA
*
76119459 GT-ATTTCTACCCTACAAGGGTATTTCA
1 GTAATTT-TACCCTACAGGGGTATTTCA
76119486 GTAATTTT
1 GTAATTTT
76119494 GTAAATCGAG
Statistics
Matches: 185, Mismatches: 33, Indels: 12
0.80 0.14 0.05
Matches are distributed among these distances:
26 7 0.04
27 170 0.92
28 8 0.04
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.39
Consensus pattern (27 bp):
GTAATTTTACCCTACAGGGGTATTTCA
Found at i:76119301 original size:54 final size:54
Alignment explanation
Indices: 76119243--76119491 Score: 248
Period size: 54 Copynumber: 4.6 Consensus size: 54
76119233 GGGCAAAATG
* * * * * *
76119243 GTAATTTTACCCCACAAGGGTATCTCGGTAAGTCTACCCTATAGGGGTATTTTA
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTA
* * * * *
76119297 GTAATTCTACCTTACAGGGGTATTTCAGTATTTCTACCCTACAAGGGTA-TTTC
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTA
* * **
76119350 GTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCG
1 G-TAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTA
* * * * * * * **
76119405 GTATTTCTACCCTACAGGGGTATTTTAGTATTTGTATCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTA
* *
76119459 GTATTTCTACCCTACAAGGGTATTTCAGTAATT
1 GTAATTCTACCCTACAGGGGTATTTCAGTAATT
76119492 TTGTAAATCG
Statistics
Matches: 164, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
53 4 0.02
54 157 0.96
55 3 0.02
ACGTcount: A:0.24, C:0.18, G:0.19, T:0.38
Consensus pattern (54 bp):
GTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCCTATAGGGGTATTTTA
Found at i:76119366 original size:81 final size:80
Alignment explanation
Indices: 76119246--76119488 Score: 299
Period size: 81 Copynumber: 3.0 Consensus size: 80
76119236 CAAAATGGTA
* * * *
76119246 ATTT-TACCCCACAAGGGTATCTCGGTAAGTCTACCCTATAGGGGTATTTTAGTAATTCTACCTT
1 ATTTCTACCCTACAAGGGTATTTC-GTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
76119310 ACAGGGGTATTTCAGT
65 ACAGGGGTATTTCAGT
76119326 ATTTCTACCCTACAAGGGTATTTCGTTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
1 ATTTCTACCCTACAAGGGTATTTCG-TAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
* *
76119391 ATAGGGGTATTTCGGT
65 ACAGGGGTATTTCAGT
* * * * * * * ** *
76119407 ATTTCTACCCTACAGGGGTATTTTAGTATTTGTATCCTACAAGGGTATTTCGGTATTTCTACCCT
1 ATTTCTACCCTACAAGGGTA-TTTCGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCT
*
76119472 ACAAGGGTATTTCAGT
65 ACAGGGGTATTTCAGT
76119488 A
1 A
76119489 ATTTTGTAAA
Statistics
Matches: 141, Mismatches: 19, Indels: 5
0.85 0.12 0.03
Matches are distributed among these distances:
80 5 0.04
81 132 0.94
82 4 0.03
ACGTcount: A:0.24, C:0.19, G:0.19, T:0.38
Consensus pattern (80 bp):
ATTTCTACCCTACAAGGGTATTTCGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTA
CAGGGGTATTTCAGT
Found at i:76119505 original size:27 final size:27
Alignment explanation
Indices: 76119475--76119740 Score: 180
Period size: 27 Copynumber: 9.9 Consensus size: 27
76119465 CTACCCTACA
**
76119475 AGGGTATTTCAGTAATTTTGTAAATCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*** * * *
76119502 AGGGTAAAACGGTAATTCTATAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
* *
76119528 AGGGGTACTTT-GGTAATTTTACAAGTCG
1 A-GGGTA-TTTCAGTAATTTTACAAATCG
* **
76119556 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTCAGTAATTTTACAAATCG
*
76119583 AGGGTATTTCAGTAATTTCACAAATC-
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
76119609 AGGGTATTTTGGTAATTTCACAAA-CT
1 AGGGTATTTCAGTAATTTTACAAATCG
** * *
76119635 AGGGGTATTTTGGTAATTTTACAAACCA
1 A-GGGTATTTCAGTAATTTTACAAATCG
** * *
76119663 AGGGTATTTTGGTAATTTTACAAACCA
1 AGGGTATTTCAGTAATTTTACAAATCG
** * * * *
76119690 AGGGTATTTTGGTGATTTTATAAACCA
1 AGGGTATTTCAGTAATTTTACAAATCG
*
76119717 AGGGTATTTTAGTAATTTTACAAA
1 AGGGTATTTCAGTAATTTTACAAA
76119741 CTAGGGGTAT
Statistics
Matches: 204, Mismatches: 28, Indels: 14
0.83 0.11 0.06
Matches are distributed among these distances:
25 1 0.00
26 27 0.13
27 173 0.85
28 3 0.01
ACGTcount: A:0.32, C:0.10, G:0.21, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTTACAAATCG
Found at i:76119515 original size:54 final size:54
Alignment explanation
Indices: 76119403--76119521 Score: 125
Period size: 54 Copynumber: 2.2 Consensus size: 54
76119393 AGGGGTATTT
* * ** ***
76119403 CGGTATTTCTACCCTACAGGGGTATTTTAGTATTTGTATCCTACAAGGGTATTT
1 CGGTATTTCTACCCTACAAGGGTATTTCAGTATTTGTATAATACAAGGGTAAAA
*
76119457 CGGTATTTCTACCCTACAAGGGTATTTCAGTAATTTTGTA-AAT-CGAGGGTAAAA
1 CGGTATTTCTACCCTACAAGGGTATTTCAGT-A-TTTGTATAATACAAGGGTAAAA
*
76119511 CGGTAATTCTA
1 CGGTATTTCTA
76119522 TAAATCAGGG
Statistics
Matches: 54, Mismatches: 9, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
54 46 0.85
55 2 0.04
56 6 0.11
ACGTcount: A:0.27, C:0.16, G:0.20, T:0.37
Consensus pattern (54 bp):
CGGTATTTCTACCCTACAAGGGTATTTCAGTATTTGTATAATACAAGGGTAAAA
Found at i:76119770 original size:27 final size:27
Alignment explanation
Indices: 76119512--76119761 Score: 250
Period size: 27 Copynumber: 9.3 Consensus size: 27
76119502 AGGGTAAAAC
* * * * *
76119512 GGTAATTCTATAAATCAGGGGTACTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
** * *
76119539 GGTAATTTTACAAGTCGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
** *** * *
76119566 AATAATTTTACAGGTCGAGGGTATTTC
1 GGTAATTTTACAAACCAAGGGTATTTT
* * *
76119593 AGTAATTTCACAAATC-AGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* * *
76119619 GGTAATTTCACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
76119646 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
76119673 GGTAATTTTACAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* *
76119700 GGTGATTTTATAAACCAAGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
* * *
76119727 AGTAATTTTACAAACTAGGGGTATTTT
1 GGTAATTTTACAAACCAAGGGTATTTT
76119754 GGTAATTT
1 GGTAATTT
76119762 GGTAAACTAA
Statistics
Matches: 192, Mismatches: 30, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.11
27 170 0.89
ACGTcount: A:0.31, C:0.10, G:0.21, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACAAACCAAGGGTATTTT
Found at i:76122321 original size:35 final size:35
Alignment explanation
Indices: 76122159--76122320 Score: 159
Period size: 35 Copynumber: 4.6 Consensus size: 35
76122149 AGTACATCGT
* *
76122159 TAATCCAACTAAAACACACCAGATGCTCAGAAGAGC
1 TAATCCAACTGAAACACACCA-ATGCTCATAAGAGC
* * *
76122195 CAATCCAACTG-AACACACCAATGCTTATAAAAGC
1 TAATCCAACTGAAACACACCAATGCTCATAAGAGC
** * *
76122229 TAATCCCTCTGAAACACTA-CAATGGTCATAAGAGT
1 TAATCCAACTGAAACAC-ACCAATGCTCATAAGAGC
* * *
76122264 TAGTCCAACTGAAACATACCAAAGCTCATAAGAGC
1 TAATCCAACTGAAACACACCAATGCTCATAAGAGC
*
76122299 TAGTCCAA-TCGAAACACACCAA
1 TAATCCAACT-GAAACACACCAA
76122321 ATAGAGTGTA
Statistics
Matches: 102, Mismatches: 20, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
34 21 0.21
35 71 0.70
36 10 0.10
ACGTcount: A:0.43, C:0.27, G:0.12, T:0.18
Consensus pattern (35 bp):
TAATCCAACTGAAACACACCAATGCTCATAAGAGC
Found at i:76132381 original size:21 final size:21
Alignment explanation
Indices: 76132352--76132404 Score: 81
Period size: 21 Copynumber: 2.5 Consensus size: 21
76132342 GTCAATAGCG
76132352 CACGGGCGTGTCCAC-ATTTCA
1 CACGGGCGTGTCC-CTATTTCA
*
76132373 CACGAGCGTGTCCCTATTTCA
1 CACGGGCGTGTCCCTATTTCA
76132394 CACGGGCGTGT
1 CACGGGCGTGT
76132405 GACTCTGTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 1 0.03
21 28 0.97
ACGTcount: A:0.17, C:0.32, G:0.26, T:0.25
Consensus pattern (21 bp):
CACGGGCGTGTCCCTATTTCA
Found at i:76132501 original size:21 final size:21
Alignment explanation
Indices: 76132475--76132515 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
76132465 ACTTCCGATG
76132475 TATGTTTTGGACCTCATAGGC
1 TATGTTTTGGACCTCATAGGC
76132496 TATGTTTTGGACCTCATAGG
1 TATGTTTTGGACCTCATAGG
76132516 TCCATACAAG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.20, C:0.17, G:0.24, T:0.39
Consensus pattern (21 bp):
TATGTTTTGGACCTCATAGGC
Found at i:76140910 original size:5 final size:5
Alignment explanation
Indices: 76140880--76140938 Score: 59
Period size: 6 Copynumber: 11.2 Consensus size: 5
76140870 TGAAAAATCA
76140880 AAAAT AAAAAGT AAAAT AAGAAT AAAAT -AAAT AAAAT AAGAAT -AAAT
1 AAAAT -AAAA-T AAAAT AA-AAT AAAAT AAAAT AAAAT AA-AAT AAAAT
76140927 AAAAAT AAAAT A
1 -AAAAT AAAAT A
76140939 GGAGGATTCA
Statistics
Matches: 47, Mismatches: 0, Indels: 13
0.78 0.00 0.22
Matches are distributed among these distances:
4 7 0.15
5 19 0.40
6 20 0.43
7 1 0.02
ACGTcount: A:0.76, C:0.00, G:0.05, T:0.19
Consensus pattern (5 bp):
AAAAT
Done.