Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 225 of 297
Found at i:76646248 original size:15 final size:15
Alignment explanation
Indices: 76646171--76646248 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
76646161 AGAAAACCGA
76646171 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
76646186 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
76646200 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
76646215 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
76646231 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
76646246 ATA
1 ATA
76646249 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:76649797 original size:13 final size:13
Alignment explanation
Indices: 76649779--76649804 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
76649769 TCCATGATTT
76649779 TTTGAAAATTTTG
1 TTTGAAAATTTTG
76649792 TTTGAAAATTTTG
1 TTTGAAAATTTTG
76649805 ACGTTTGGGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.15, T:0.54
Consensus pattern (13 bp):
TTTGAAAATTTTG
Found at i:76651100 original size:96 final size:92
Alignment explanation
Indices: 76650890--76651215 Score: 282
Period size: 96 Copynumber: 3.5 Consensus size: 92
76650880 ATGTGAGTAT
* * ** * * *
76650890 TGAGATCCTGTTTAAGACCATATTTGGGATATGACATCGGCATCAAG-ATGAGATCCGTGTAAGA
1 TGAGATCCCGTATAAGACCACGTCTGGGACATGACATCGGCATC-AGTATGAGATCCATGTAAGA
* *
76650954 CCATATCTGGGGTATGGCATCGACATCGATA
65 CCATATCT--GGTAT-GCATTGGCATCGATA
* * *
76650985 AGAGATCTCGTATAAGACCACGTCTGGGACATGACATTGGCATCAGTATGAGATCCAATGTAAGA
1 TGAGATCCCGTATAAGACCACGTCTGGGACATGACATCGGCATCAGTATGAGATCC-ATGTAAGA
*
76651050 CCATATCTGAGATATGACATTGGCATTGATA
65 CCATATCTG-G-TATG-CATTGGCATCGATA
* * * * * *
76651081 TGAGGTCCCGTATAAGACCATGTCTAGGACATGGCATCGGCATC-GTTATGAAACTTCATGTAAG
1 TGAGATCCCGTATAAGACCACGTCTGGGACATGACATCGGCATCAG-TATGAGA-TCCATGTAAG
* ** *
76651145 ACCATAGCTGGGCTG--TTGGCATCGATG
64 ACCATATCTGGTATGCATTGGCATCGATA
* * * * *
76651172 TGAGATCCCATGTAAGACCACGTTTGGGACATGGCATTGGCATC
1 TGAGATCCCGTATAAGACCACGTCTGGGACATGACATCGGCATC
76651216 TTTTAATGTG
Statistics
Matches: 190, Mismatches: 34, Indels: 18
0.79 0.14 0.07
Matches are distributed among these distances:
91 47 0.25
94 5 0.03
95 48 0.25
96 88 0.46
97 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.26
Consensus pattern (92 bp):
TGAGATCCCGTATAAGACCACGTCTGGGACATGACATCGGCATCAGTATGAGATCCATGTAAGAC
CATATCTGGTATGCATTGGCATCGATA
Found at i:76651131 original size:48 final size:48
Alignment explanation
Indices: 76650890--76651131 Score: 209
Period size: 48 Copynumber: 5.1 Consensus size: 48
76650880 ATGTGAGTAT
* * * * * *
76650890 TGAGATCCTGTTTAAGACCATATTTGGGATATGACATCGGCATCAAGA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGACATCGGCATCGATA
* ** * *
76650938 TGAGAT-CCGTGTAAGACCATATCTGGGGTATGGCATCGACATCGATA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGACATCGGCATCGATA
* * ** *
76650985 AGAGATCTCGTATAAGACCACGTCTGGGACATGACATTGGCATC-AGTA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGACATCGGCATCGA-TA
** * * * * *
76651033 TGAGATCCAATGTAAGACCATATCTGAGATATGACATTGGCATTGATA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGACATCGGCATCGATA
* * * * *
76651081 TGAGGTCCCGTATAAGACCATGTCTAGGACATGGCATCGGCATCGTTA
1 TGAGATCCCGTATAAGACCATATCTGGGACATGACATCGGCATCGATA
76651129 TGA
1 TGA
76651132 AACTTCATGT
Statistics
Matches: 151, Mismatches: 40, Indels: 6
0.77 0.20 0.03
Matches are distributed among these distances:
47 39 0.26
48 111 0.74
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (48 bp):
TGAGATCCCGTATAAGACCATATCTGGGACATGACATCGGCATCGATA
Found at i:76651156 original size:144 final size:138
Alignment explanation
Indices: 76650902--76651191 Score: 289
Period size: 144 Copynumber: 2.1 Consensus size: 138
76650892 AGATCCTGTT
* * * * **
76650902 TAAGACCATATTTGGGATATGACATCGGCATCAAGATGAGATCCGTGTAAGACCATATCTGGGGT
1 TAAGACCATATCTGAGATATGACATCGGCATCAAGATGAGATCCGTATAAGACCATATCTAGGAC
* * *
76650967 ATGGCATCGACATCGATAAGAGATCTCGTATAAGACCACGTCTGGGACATGACATTGGCATC-AG
66 ATGGCATCGACATCGATAAGAAATCTCATATAAGACCAAGTCTGGG-C-TG---TTGGCATCGA-
76651031 TATGAGATCCAATG
125 TATGAGATCCAATG
* ** * * *
76651045 TAAGACCATATCTGAGATATGACATTGGCATTGATATGAGGTCCCGTATAAGACCATGTCTAGGA
1 TAAGACCATATCTGAGATATGACATCGGCATCAAGATGAGAT-CCGTATAAGACCATATCTAGGA
* * * * *
76651110 CATGGCATCGGCATCGTTATGAAA-CTTCATGTAAGACCATAG-CTGGGCTGTTGGCATCGATGT
65 CATGGCATCGACATCGATAAGAAATC-TCATATAAGACCA-AGTCTGGGCTGTTGGCATCGATAT
*
76651173 GAGATCCCATG
128 GAGATCCAATG
76651184 TAAGACCA
1 TAAGACCA
76651192 CGTTTGGGAC
Statistics
Matches: 122, Mismatches: 21, Indels: 12
0.79 0.14 0.08
Matches are distributed among these distances:
139 28 0.23
140 1 0.01
142 2 0.02
143 37 0.30
144 53 0.43
145 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.25, T:0.26
Consensus pattern (138 bp):
TAAGACCATATCTGAGATATGACATCGGCATCAAGATGAGATCCGTATAAGACCATATCTAGGAC
ATGGCATCGACATCGATAAGAAATCTCATATAAGACCAAGTCTGGGCTGTTGGCATCGATATGAG
ATCCAATG
Found at i:76657360 original size:35 final size:35
Alignment explanation
Indices: 76657309--76657376 Score: 118
Period size: 35 Copynumber: 1.9 Consensus size: 35
76657299 GAGGTTTCAC
* *
76657309 TCCATAGAGCATGTAGACCATTTTCATGGTGTCTA
1 TCCATAGAGCACGTAGACCATTTACATGGTGTCTA
76657344 TCCATAGAGCACGTAGACCATTTACATGGTGTC
1 TCCATAGAGCACGTAGACCATTTACATGGTGTC
76657377 GCTCTATAGA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 31 1.00
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (35 bp):
TCCATAGAGCACGTAGACCATTTACATGGTGTCTA
Found at i:76657386 original size:35 final size:35
Alignment explanation
Indices: 76657309--76657388 Score: 115
Period size: 35 Copynumber: 2.3 Consensus size: 35
76657299 GAGGTTTCAC
* * *
76657309 TCCATAGAGCATGTAGACCATTTTCATGGTGTCTA
1 TCCATAGAGCACGTAGACCATTTACATGGTGTCGA
*
76657344 TCCATAGAGCACGTAGACCATTTACATGGTGTCGC
1 TCCATAGAGCACGTAGACCATTTACATGGTGTCGA
*
76657379 TCTATAGAGC
1 TCCATAGAGC
76657389 CTATAGACTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
35 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.21, T:0.30
Consensus pattern (35 bp):
TCCATAGAGCACGTAGACCATTTACATGGTGTCGA
Found at i:76657449 original size:35 final size:35
Alignment explanation
Indices: 76657357--76657465 Score: 92
Period size: 35 Copynumber: 3.1 Consensus size: 35
76657347 ATAGAGCACG
* * * *
76657357 TAGACCATTTACATGGTGTCGCTCTATAGAGCCTA
1 TAGACTATTTACACGGTGTCGCTTTGTAGAGCCTA
* * * * * *
76657392 TAGACTGTTTATACGATATCGCTTTGTAGAGTCTG
1 TAGACTATTTACACGGTGTCGCTTTGTAGAGCCTA
* * * *
76657427 TATACTATTTACACGGTGTCGCTTCGTAGATCCCA
1 TAGACTATTTACACGGTGTCGCTTTGTAGAGCCTA
76657462 TAGA
1 TAGA
76657466 TCATTTATCC
Statistics
Matches: 53, Mismatches: 21, Indels: 0
0.72 0.28 0.00
Matches are distributed among these distances:
35 53 1.00
ACGTcount: A:0.25, C:0.20, G:0.20, T:0.35
Consensus pattern (35 bp):
TAGACTATTTACACGGTGTCGCTTTGTAGAGCCTA
Found at i:76664994 original size:27 final size:27
Alignment explanation
Indices: 76664658--76664994 Score: 406
Period size: 27 Copynumber: 12.5 Consensus size: 27
76664648 CGTACCTGAA
* *
76664658 CCCTTATGTGATAAAATGACAATTTTT
1 CCCTTATGTGGTAAAATGACAATTTTG
* *
76664685 CCCTTATGTGATAAAATGACAATTTTT
1 CCCTTATGTGGTAAAATGACAATTTTG
* * *
76664712 CCCTTATGTTGCAAAATGACAGTTTTG
1 CCCTTATGTGGTAAAATGACAATTTTG
* **
76664739 CCCTTATGTTGTAAAATGACTGTTTTG
1 CCCTTATGTGGTAAAATGACAATTTTG
* *
76664766 CCCTTATGTGTTAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACAATTTTG
* **
76664793 CCCTTATGTGTTAAAATGATGATTTTG
1 CCCTTATGTGGTAAAATGACAATTTTG
* * **
76664820 CCTTTATATATTAAAATGACAATTTTG
1 CCCTTATGTGGTAAAATGACAATTTTG
76664847 CCCTTATGTGAG-AAAATGACAATTTTG
1 CCCTTATGTG-GTAAAATGACAATTTTG
* * *
76664874 CCCTTGTGTGGCAAAATGACTATTTTG
1 CCCTTATGTGGTAAAATGACAATTTTG
* *
76664901 CCCTTATGTGTTAAAATGACAGTTTTG
1 CCCTTATGTGGTAAAATGACAATTTTG
*
76664928 CCCTTATGTGGTAAAATGACAATTTTT
1 CCCTTATGTGGTAAAATGACAATTTTG
* * *
76664955 CCCTTATGAGGTAAAATGACTATTTTT
1 CCCTTATGTGGTAAAATGACAATTTTG
76664982 CCCTTATGTGGTA
1 CCCTTATGTGGTA
76664995 GGATGGTTGT
Statistics
Matches: 274, Mismatches: 34, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
26 1 0.00
27 273 1.00
ACGTcount: A:0.28, C:0.15, G:0.16, T:0.41
Consensus pattern (27 bp):
CCCTTATGTGGTAAAATGACAATTTTG
Found at i:76665403 original size:18 final size:18
Alignment explanation
Indices: 76665351--76665409 Score: 57
Period size: 18 Copynumber: 3.2 Consensus size: 18
76665341 TGCATTCTGT
*
76665351 ACTGATTACTGCTACTAC
1 ACTGATTACTGCTACTGC
* *
76665369 ACTGATCA-TGGGTACTGC
1 ACTGATTACT-GCTACTGC
*
76665387 ACTGATTACTGCCACTGC
1 ACTGATTACTGCTACTGC
76665405 TACTG
1 -ACTG
76665410 TTTCTGTAAT
Statistics
Matches: 32, Mismatches: 6, Indels: 5
0.74 0.14 0.12
Matches are distributed among these distances:
17 1 0.03
18 26 0.81
19 5 0.16
ACGTcount: A:0.24, C:0.27, G:0.19, T:0.31
Consensus pattern (18 bp):
ACTGATTACTGCTACTGC
Found at i:76666039 original size:15 final size:16
Alignment explanation
Indices: 76666019--76666048 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76666009 TGTAGCCTTG
76666019 TTGAT-ATGTGTTAAT
1 TTGATAATGTGTTAAT
76666034 TTGATAATGTGTTAA
1 TTGATAATGTGTTAA
76666049 AACATGTTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.30, C:0.00, G:0.20, T:0.50
Consensus pattern (16 bp):
TTGATAATGTGTTAAT
Found at i:76667741 original size:17 final size:17
Alignment explanation
Indices: 76667721--76667754 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
76667711 TTTCCTCGAT
*
76667721 TTTATTAAATTCATTAA
1 TTTAATAAATTCATTAA
*
76667738 TTTAATAATTTCATTAA
1 TTTAATAAATTCATTAA
76667755 ATTCATCAAT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.41, C:0.06, G:0.00, T:0.53
Consensus pattern (17 bp):
TTTAATAAATTCATTAA
Found at i:76689494 original size:17 final size:17
Alignment explanation
Indices: 76689464--76689496 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
76689454 TGGCCCTGTT
76689464 TCTCAAAAATTCAAATA
1 TCTCAAAAATTCAAATA
76689481 TCTCATAAAA-TCAAAT
1 TCTCA-AAAATTCAAAT
76689497 TTATATACCT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.52, C:0.18, G:0.00, T:0.30
Consensus pattern (17 bp):
TCTCAAAAATTCAAATA
Found at i:76700297 original size:46 final size:45
Alignment explanation
Indices: 76700244--76700364 Score: 145
Period size: 46 Copynumber: 2.6 Consensus size: 45
76700234 CTCGTAGCCG
76700244 ATGCATGTCCCAGACATGTCTTACATTG-ACTTACGTCTCAAGGCCA
1 ATGCATGTCCCAGACATGTCTTACATTGCACTT--GTCTCAAGGCCA
* * * *
76700290 ATGCATGTCCTAGACATGTCTTACACTAGCACTTGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACA-TTGCACTTGTCTCAAGGCCA
*
76700336 ATGCCTTGTCCCAGACATGGTCTTACATT
1 ATG-CATGTCCCAGACAT-GTCTTACATT
76700365 TGCTCTCATA
Statistics
Matches: 64, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
46 37 0.58
47 15 0.23
48 12 0.19
ACGTcount: A:0.24, C:0.28, G:0.17, T:0.31
Consensus pattern (45 bp):
ATGCATGTCCCAGACATGTCTTACATTGCACTTGTCTCAAGGCCA
Found at i:76707126 original size:44 final size:45
Alignment explanation
Indices: 76707066--76707162 Score: 135
Period size: 46 Copynumber: 2.1 Consensus size: 45
76707056 CCATGGCCAA
76707066 ACATGGTCTTACACTGAC-ACATCTCGTA-GCCGATGCATGTCCCAG
1 ACAT-GTCTTACACTGACTACATCTCG-AGGCCGATGCATGTCCCAG
* *
76707111 ACATGTCTTACACTGACTTACGTCTCGAGGTCGATGCATGTCCCAG
1 ACATGTCTTACACTGAC-TACATCTCGAGGCCGATGCATGTCCCAG
76707157 ACATGT
1 ACATGT
76707163 AATCTCAATG
Statistics
Matches: 47, Mismatches: 2, Indels: 5
0.87 0.04 0.09
Matches are distributed among these distances:
44 13 0.28
45 5 0.11
46 29 0.62
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (45 bp):
ACATGTCTTACACTGACTACATCTCGAGGCCGATGCATGTCCCAG
Found at i:76708851 original size:36 final size:36
Alignment explanation
Indices: 76708804--76708874 Score: 106
Period size: 36 Copynumber: 2.0 Consensus size: 36
76708794 TGGTTTTTAT
** *
76708804 AATATGTTGAAATGGAATATTTATGATTTATGACTC
1 AATATGTTGAAATGGAATATGCATGATATATGACTC
*
76708840 AATATGTTGAAATGGACTATGCATGATATATGACT
1 AATATGTTGAAATGGAATATGCATGATATATGACT
76708875 AAATTAATAA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.37, C:0.07, G:0.18, T:0.38
Consensus pattern (36 bp):
AATATGTTGAAATGGAATATGCATGATATATGACTC
Found at i:76727941 original size:47 final size:46
Alignment explanation
Indices: 76727834--76728149 Score: 220
Period size: 47 Copynumber: 6.7 Consensus size: 46
76727824 TTTGTGTGCT
*
76727834 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATT---ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--GCATTGAGATGAGAGCC
** * *
76727880 AAAGTAAGACCATGTCCGGGACATGCCATCGGCATTGAGATGAGAGCT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCATTGAGATGAGAGCC
* *
76727928 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATG-AGAGCC
* * * * * *
76727974 AGTGTAAGACATGTCTGGTACTTGCATCAGC--T-ACATGATGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGA-GAGCC
* * * * * *
76728018 AATGTAAGACTATG-CTGGGATATGGCATCGACATGGATACGTGAGAGTC
1 AGTGTAAGAC-ATGTCTGGGACAT-GCATCGGCATTGAGA--TGAGAGCC
* *
76728067 AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTAATG-TGAGAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCATTGA-GATGAGAGCC
*
76728114 AGTGTAAGACCATGTCTGGAACATGACATCGGCATT
1 AGTGTAAGA-CATGTCTGGGACATG-CATCGGCATT
76728150 ATACCCTATA
Statistics
Matches: 215, Mismatches: 35, Indels: 38
0.75 0.12 0.13
Matches are distributed among these distances:
42 1 0.00
43 4 0.02
44 17 0.08
45 13 0.06
46 53 0.25
47 66 0.31
48 23 0.11
49 17 0.08
50 21 0.10
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCATTGAGATGAGAGCC
Found at i:76728086 original size:140 final size:139
Alignment explanation
Indices: 76727834--76728143 Score: 335
Period size: 140 Copynumber: 2.2 Consensus size: 139
76727824 TTTGTGTGCT
*
76727834 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCCAAAGTAAGACCATGTCCGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATGAT-AGAGCCAAAGTAAGACCATGTCCGG
* * *
76727899 GACATGCCATCGGCATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGACAT-GCATCGGCCTCG
65 GACATGCCATCGACATGGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATC-GACT-G
76727963 AGATGT-A-AGCC
128 A-ATGTGAGAGCC
* * * * * * * *
76727974 AGTGTAAGACATGTCTGGTACTTGCATCAGCTACATGAT-GTGTCAATGTAAGACTATG-CTGGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATAGAGCCAAAGTAAGACCATGTCCGGG
* * *
76728037 ATATGGCATCGACATGGATACGTGAGAG-TCAGTGTAAGACCATGTCTGGGACATGGCATCGACT
66 ACATGCCATCGACATGGAGA--TGAGAGCT-AGTGTAAGA-CATGTCTGGGACATGGCATCGACT
*
76728101 TAATGTGAGAGCC
127 GAATGTGAGAGCC
*
76728114 AGTGTAAGACCATGTCTGGAACATGACATC
1 AGTGTAAGA-CATGTCTGGGACATG-CATC
76728144 GGCATTATAC
Statistics
Matches: 143, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
137 19 0.13
138 20 0.14
139 17 0.12
140 65 0.45
141 18 0.13
142 4 0.03
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (139 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATGATAGAGCCAAAGTAAGACCATGTCCGGG
ACATGCCATCGACATGGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTGAAT
GTGAGAGCC
Found at i:76732826 original size:30 final size:30
Alignment explanation
Indices: 76732792--76732852 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
76732782 TCCTTAACTC
76732792 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
76732822 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
76732852 A
1 A
76732853 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:76737966 original size:57 final size:58
Alignment explanation
Indices: 76737905--76738021 Score: 157
Period size: 58 Copynumber: 2.0 Consensus size: 58
76737895 TCCTCTTTCC
* *
76737905 AACATATGTTCATA-AGAGCTTA-ATCAAGATTACCCGTCCAGGCTAAATCCTATCTAT
1 AACATATGCTCA-AGAGAGCTTATATCAAGATTACCAGTCCAGGCTAAATCCTATCTAT
* * * *
76737962 AACATATGCTCAAGAGGGCTTATATCAGGATTACCAGTCTAGGCTAAATCCTTTCTAT
1 AACATATGCTCAAGAGAGCTTATATCAAGATTACCAGTCCAGGCTAAATCCTATCTAT
76738020 AA
1 AA
76738022 TGAGGTCAAT
Statistics
Matches: 52, Mismatches: 6, Indels: 3
0.85 0.10 0.05
Matches are distributed among these distances:
56 1 0.02
57 18 0.35
58 33 0.63
ACGTcount: A:0.34, C:0.21, G:0.15, T:0.30
Consensus pattern (58 bp):
AACATATGCTCAAGAGAGCTTATATCAAGATTACCAGTCCAGGCTAAATCCTATCTAT
Found at i:76740237 original size:56 final size:56
Alignment explanation
Indices: 76740151--76740326 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
76740141 ACAAGGGATG
*
76740151 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
76740207 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
76740263 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
76740319 ATGGGCAA
1 ATGGGCAA
76740327 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
Found at i:76741590 original size:79 final size:81
Alignment explanation
Indices: 76741454--76741636 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
76741444 TCGAATGATG
* *
76741454 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
76741518 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76741533 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
76741595 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76741613 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76741637 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76741652 original size:40 final size:40
Alignment explanation
Indices: 76741455--76741638 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
76741445 CGAATGATGT
* * * *
76741455 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
76741495 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
76741535 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76741573 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76741614 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76741639 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76741660 original size:79 final size:79
Alignment explanation
Indices: 76741507--76741671 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
76741497 GGACTAAGAT
* **
76741507 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
76741572 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
76741586 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
76741649 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76741665 CCGAAGG
1 CCGAAGG
76741672 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76755172 original size:56 final size:54
Alignment explanation
Indices: 76755054--76755186 Score: 203
Period size: 56 Copynumber: 2.4 Consensus size: 54
76755044 TCCCAAATAG
* * *
76755054 GGTCTTACTCGTAAACACATATCAGAATCACATATCTGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCTGCCAACGTATTAAACGT
*
76755108 GGTCTTACTCGCACACACATATCAGAATCATATATCGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATC--TGCCAACGTATTAAACGT
*
76755164 GGTCTTACTCCCACACACATATC
1 GGTCTTACTCGCACACACATATC
76755187 GTACAATGCC
Statistics
Matches: 72, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
54 33 0.46
56 39 0.54
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (54 bp):
GGTCTTACTCGCACACACATATCAGAATCACATATCTGCCAACGTATTAAACGT
Found at i:76755258 original size:43 final size:43
Alignment explanation
Indices: 76755192--76755485 Score: 279
Period size: 43 Copynumber: 7.0 Consensus size: 43
76755182 ATATCGTACA
* *
76755192 ATGCCAAC-GTCCTAGACATGGTCTTACATGTAATCACATATCG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
76755235 ATGCCACTGTCCTAGACAGGGTCTTACACG-AATCAAATAT-G
1 ATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
76755276 ATGTCGA-TGTCCCAGACCTAGTTTTACACGTAATCACATATCG
1 ATG-CCACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
76755319 ATGCCAAC-GTCCCAGACGTGGTCTTACACG-AATCAAATAT-G
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* *
76755360 ATGTCGA-TGTCCCAGACATGGTTTTACACGTAATCACATATCG
1 ATG-CCACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * *
76755403 ATGCCAAC-GTCCCAAACGTGGTCTTACACG-AATCAAATA-CG
1 ATGCC-ACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
***
76755444 ATTTTGA-TGTCCCAGACATGGTCTTACACGTAATCACATATC
1 A-TGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATC
76755486 AAAAATCCTA
Statistics
Matches: 205, Mismatches: 30, Indels: 32
0.77 0.11 0.12
Matches are distributed among these distances:
41 71 0.35
42 60 0.29
43 74 0.36
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCACTGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:76755303 original size:41 final size:42
Alignment explanation
Indices: 76755200--76755484 Score: 281
Period size: 41 Copynumber: 6.8 Consensus size: 42
76755190 CAATGCCAAC
* * * *
76755200 GTCCTAGACATGGTCTTACATGTAATCACATATCGATG-CCACT
1 GTCCCAGACATGGTCTTACACGTAATCAAATAT-GATGTCGA-T
* *
76755243 GTCCTAGACAGGGTCTTACACG-AATCAAATATGATGTCGAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATATGATGTCGAT
* * * * * * *
76755284 GTCCCAGACCTAGTTTTACACGTAATCACATATCGATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAATCAAATAT-GATGTCGAT
*
76755327 GTCCCAGACGTGGTCTTACACG-AATCAAATATGATGTCGAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATATGATGTCGAT
* * * * *
76755368 GTCCCAGACATGGTTTTACACGTAATCACATATCGATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAATCAAATAT-GATGTCGAT
* * * * *
76755411 GTCCCAAACGTGGTCTTACACG-AATCAAATACGATTTTGAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATATGATGTCGAT
*
76755452 GTCCCAGACATGGTCTTACACGTAATCACATAT
1 GTCCCAGACATGGTCTTACACGTAATCAAATAT
76755485 CAAAAATCCT
Statistics
Matches: 196, Mismatches: 40, Indels: 13
0.79 0.16 0.05
Matches are distributed among these distances:
41 72 0.37
42 54 0.28
43 70 0.36
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAATCAAATATGATGTCGAT
Found at i:76755324 original size:84 final size:84
Alignment explanation
Indices: 76755200--76755485 Score: 441
Period size: 84 Copynumber: 3.4 Consensus size: 84
76755190 CAATGCCAAC
* * * *
76755200 GTCCTAGACATGGTCTTACATGTAATCACATATCGATGCC-ACTGTCCTAGACAG-GGTCTTACA
1 GTCCCAGACATGGTTTTACACGTAATCACATATCGATGCCAAC-GTCCCAGAC-GTGGTCTTACA
76755263 CGAATCAAATATGATGTCGAT
64 CGAATCAAATATGATGTCGAT
* *
76755284 GTCCCAGACCTAGTTTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACG
1 GTCCCAGACATGGTTTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACG
76755349 AATCAAATATGATGTCGAT
66 AATCAAATATGATGTCGAT
*
76755368 GTCCCAGACATGGTTTTACACGTAATCACATATCGATGCCAACGTCCCAAACGTGGTCTTACACG
1 GTCCCAGACATGGTTTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACG
* * *
76755433 AATCAAATACGATTTTGAT
66 AATCAAATATGATGTCGAT
*
76755452 GTCCCAGACATGGTCTTACACGTAATCACATATC
1 GTCCCAGACATGGTTTTACACGTAATCACATATC
76755486 AAAAATCCTA
Statistics
Matches: 187, Mismatches: 13, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
83 1 0.01
84 184 0.98
85 2 0.01
ACGTcount: A:0.30, C:0.25, G:0.17, T:0.27
Consensus pattern (84 bp):
GTCCCAGACATGGTTTTACACGTAATCACATATCGATGCCAACGTCCCAGACGTGGTCTTACACG
AATCAAATATGATGTCGAT
Found at i:76767821 original size:13 final size:13
Alignment explanation
Indices: 76767803--76767831 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
76767793 GGTTGTTTAT
76767803 TAAACTAATTAAC
1 TAAACTAATTAAC
76767816 TAAACTAATTAAC
1 TAAACTAATTAAC
76767829 TAA
1 TAA
76767832 TTAAAATAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (13 bp):
TAAACTAATTAAC
Found at i:76769744 original size:8 final size:8
Alignment explanation
Indices: 76769731--76769759 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
76769721 ATTTCAACAA
76769731 TAATGGGT
1 TAATGGGT
76769739 TAATGGGT
1 TAATGGGT
76769747 TAATGGGT
1 TAATGGGT
76769755 TAATG
1 TAATG
76769760 ATGAGGGTTA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.28, C:0.00, G:0.34, T:0.38
Consensus pattern (8 bp):
TAATGGGT
Found at i:76770737 original size:6 final size:6
Alignment explanation
Indices: 76770728--76770760 Score: 57
Period size: 6 Copynumber: 5.5 Consensus size: 6
76770718 AATAAAATTG
*
76770728 AAATGA AAATAA AAATAA AAATAA AAATAA AAA
1 AAATAA AAATAA AAATAA AAATAA AAATAA AAA
76770761 GATAAGAGGA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.82, C:0.00, G:0.03, T:0.15
Consensus pattern (6 bp):
AAATAA
Found at i:76792517 original size:40 final size:40
Alignment explanation
Indices: 76792415--76792556 Score: 158
Period size: 40 Copynumber: 3.5 Consensus size: 40
76792405 TGAATTCTTG
* * * *
76792415 CACACTAAGTGCCAAAACATAGTCGAAGCTATTTCAATCTCT
1 CACACTAAGTGCC-ATACATAGTCGAAGCTATCTCAA-ATCA
* *
76792457 CACATTAAGTGTCATACATAGTCGAAGCTATCTCAAATCA
1 CACACTAAGTGCCATACATAGTCGAAGCTATCTCAAATCA
* * ** *
76792497 CACACTAAGTGCCATACATAGCCGAAGTTATCTTGAATCG
1 CACACTAAGTGCCATACATAGTCGAAGCTATCTCAAATCA
*
76792537 CACATTAAGTGCCATACATA
1 CACACTAAGTGCCATACATA
76792557 ACCGAATTGT
Statistics
Matches: 86, Mismatches: 14, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
40 54 0.63
41 21 0.24
42 11 0.13
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (40 bp):
CACACTAAGTGCCATACATAGTCGAAGCTATCTCAAATCA
Found at i:76795660 original size:28 final size:28
Alignment explanation
Indices: 76795565--76795665 Score: 123
Period size: 28 Copynumber: 3.6 Consensus size: 28
76795555 TACTTAATGC
*
76795565 CTCGCACACTAAGTGCCATC-CTCGATAT
1 CTCGCACACTAAGTGCCA-CACTCAATAT
* * *
76795593 CTCGTACACTAACTGCCACACTCAGTAT
1 CTCGCACACTAAGTGCCACACTCAATAT
* *
76795621 CTCGTACACTAAGTTCCACACTCAATAT
1 CTCGCACACTAAGTGCCACACTCAATAT
*
76795649 CTCGCACGCTAAGTGCC
1 CTCGCACACTAAGTGCC
76795666 GTATATAGCA
Statistics
Matches: 62, Mismatches: 10, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
27 1 0.02
28 61 0.98
ACGTcount: A:0.27, C:0.36, G:0.13, T:0.25
Consensus pattern (28 bp):
CTCGCACACTAAGTGCCACACTCAATAT
Found at i:76795701 original size:40 final size:40
Alignment explanation
Indices: 76795650--76795742 Score: 105
Period size: 40 Copynumber: 2.3 Consensus size: 40
76795640 ACTCAATATC
* *
76795650 TCGCACGCTAAGTGCCGTATATAGCAAAAGCTATCTCAAA
1 TCGCACACTAAGTGCCATATATAGCAAAAGCTATCTCAAA
** ** * *
76795690 TCGCACACTAAGTGTTATATATAGCCGAAGCTATGTCGAA
1 TCGCACACTAAGTGCCATATATAGCAAAAGCTATCTCAAA
*
76795730 TCTCACACTAAGT
1 TCGCACACTAAGT
76795743 ACCACAAATA
Statistics
Matches: 44, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (40 bp):
TCGCACACTAAGTGCCATATATAGCAAAAGCTATCTCAAA
Found at i:76801107 original size:23 final size:23
Alignment explanation
Indices: 76801080--76801204 Score: 121
Period size: 23 Copynumber: 5.4 Consensus size: 23
76801070 GCTTATGAAT
*
76801080 AGTAAGCTCTAATGAGCTGGAAC
1 AGTAAGCTCTAATGAGCTGAAAC
* * *
76801103 GGTAAGCTCTATTGAGTTGAAAC
1 AGTAAGCTCTAATGAGCTGAAAC
* *
76801126 -GTTAAGCTCTATTGAACT-AAAC
1 AG-TAAGCTCTAATGAGCTGAAAC
* *
76801148 AGTAAGCTC-ATACGAGCTAAAAC
1 AGTAAGCTCTA-ATGAGCTGAAAC
*
76801171 AGTAAGCTCCAATGAGCTGAAAAC
1 AGTAAGCTCTAATGAGCTG-AAAC
76801195 AGTAAGCTCT
1 AGTAAGCTCT
76801205 TTCAAGTTGA
Statistics
Matches: 84, Mismatches: 12, Indels: 11
0.79 0.11 0.10
Matches are distributed among these distances:
21 1 0.01
22 16 0.19
23 53 0.63
24 14 0.17
ACGTcount: A:0.37, C:0.18, G:0.21, T:0.24
Consensus pattern (23 bp):
AGTAAGCTCTAATGAGCTGAAAC
Found at i:76805220 original size:43 final size:43
Alignment explanation
Indices: 76805165--76805337 Score: 199
Period size: 43 Copynumber: 4.0 Consensus size: 43
76805155 AGCTCGTACA
* *
76805165 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCG
* * * * * *
76805207 ATGCCACTGTCCCAGACAGGGTCTTACACT-AAATCATATAACG
1 ATGCCAATATCCCAGACATGGTCTTACA-TGTAATCACATATCG
* *
76805250 ATGCCAATATCCCAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATAT-CG
* *
76805293 ATGCCAATGTCCCAGACATGGTCTTACATGTAATCACATCTCG
1 ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCG
76805336 AT
1 AT
76805338 AACCTAATGT
Statistics
Matches: 106, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
42 6 0.06
43 98 0.92
44 2 0.02
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.27
Consensus pattern (43 bp):
ATGCCAATATCCCAGACATGGTCTTACATGTAATCACATATCG
Found at i:76816729 original size:45 final size:45
Alignment explanation
Indices: 76816665--76816754 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
76816655 ATTTGCTAGC
76816665 AGACACCACTCTTGATCTTTATTTAATTGCGTTATTATAAGCCTT
1 AGACACCACTCTTGATCTTTATTTAATTGCGTTATTATAAGCCTT
76816710 AGACACCACTCTTGATCTTTATTTAATTGCGTTATTATAAGCCTT
1 AGACACCACTCTTGATCTTTATTTAATTGCGTTATTATAAGCCTT
76816755 GGTGCATGTA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.27, C:0.20, G:0.11, T:0.42
Consensus pattern (45 bp):
AGACACCACTCTTGATCTTTATTTAATTGCGTTATTATAAGCCTT
Found at i:76817848 original size:12 final size:12
Alignment explanation
Indices: 76817831--76817861 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
76817821 GTAAACTATT
76817831 AATATTAATACA
1 AATATTAATACA
76817843 AATATTAATACA
1 AATATTAATACA
76817855 AATATTA
1 AATATTA
76817862 TTATTATTAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (12 bp):
AATATTAATACA
Found at i:76820167 original size:8 final size:8
Alignment explanation
Indices: 76820133--76820167 Score: 54
Period size: 8 Copynumber: 4.4 Consensus size: 8
76820123 AAGGGCAAAG
76820133 AAATAAT-
1 AAATAATA
76820140 AAATAAATA
1 AAAT-AATA
76820149 AAATAATA
1 AAATAATA
76820157 AAATAATA
1 AAATAATA
76820165 AAA
1 AAA
76820168 ATGAAAAGTT
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
7 4 0.15
8 18 0.69
9 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AAATAATA
Found at i:76820415 original size:22 final size:21
Alignment explanation
Indices: 76820355--76820416 Score: 56
Period size: 22 Copynumber: 2.9 Consensus size: 21
76820345 TAAATTTAAA
*
76820355 TAAAATAAGTAAAT-AAAATAC
1 TAAAATAA-AAAATAAAAATAC
*
76820376 TAAAAT-AAAAATCCAAAAATAT
1 TAAAATAAAAAAT--AAAAATAC
76820398 TAAAAATAAAAAATAAAAA
1 T-AAAATAAAAAATAAAAA
76820417 AGGGACTAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 9
0.76 0.04 0.20
Matches are distributed among these distances:
19 4 0.12
20 1 0.03
21 6 0.18
22 12 0.35
23 5 0.15
24 6 0.18
ACGTcount: A:0.73, C:0.05, G:0.02, T:0.21
Consensus pattern (21 bp):
TAAAATAAAAAATAAAAATAC
Found at i:76823052 original size:47 final size:47
Alignment explanation
Indices: 76822998--76823140 Score: 241
Period size: 47 Copynumber: 3.0 Consensus size: 47
76822988 GTTGAATTTA
*
76822998 AAGCTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
76823045 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
* * **
76823092 AAGCTTGTTAAATTTTCCCTTATTATTTCAAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
76823139 AA
1 AA
76823141 AGAAAATTTT
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 91 1.00
ACGTcount: A:0.29, C:0.13, G:0.13, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
Found at i:76823979 original size:45 final size:45
Alignment explanation
Indices: 76823915--76824134 Score: 306
Period size: 45 Copynumber: 5.0 Consensus size: 45
76823905 TATCGTACAG
*
76823915 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
76823960 TACTATTCGGGCCTTTGAGCTTAGCAGGCTATAATGCCAGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
76824005 TACTATTCAGGCCTTCGAGCCTAGTAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
76824050 TACTATTCGGG-CTTTCGAGCCTAGCAGGCTATAATGCCGGTGATA
1 TACTATTCGGGCCTTT-GAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
76824095 TGA-TA-TCGGG-CTTCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
76824135 ATGAATTCAG
Statistics
Matches: 159, Mismatches: 14, Indels: 7
0.88 0.08 0.04
Matches are distributed among these distances:
42 11 0.07
43 14 0.09
44 11 0.07
45 122 0.77
46 1 0.01
ACGTcount: A:0.23, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:76826731 original size:45 final size:45
Alignment explanation
Indices: 76826665--76826867 Score: 284
Period size: 45 Copynumber: 4.5 Consensus size: 45
76826655 TGTACAGTAA
*
76826665 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTAGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
*
76826710 TATTCGGGCCTTTGAGTCTAGCAGGCTACAATGC-CGATGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCG-TGAAATAC
* * *
76826755 TATTCAGGCCTTTGAGCCTAGTAGGCTACAATGCTGGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
* * * *
76826800 TATTCGGGCCTTTAAGCCCAGTAGGCTACAATGCCCGTGAAATAC
1 TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
*
76826845 TATTCGGG-CTTTCAAGCCTAGCA
1 TATTCGGGCCTTT-GAGCCTAGCA
76826868 AGCGAAATGC
Statistics
Matches: 142, Mismatches: 13, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
44 5 0.04
45 136 0.96
46 1 0.01
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTACAATGCTCGTGAAATAC
Found at i:76832754 original size:22 final size:23
Alignment explanation
Indices: 76832729--76832773 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
76832719 TAGGTGGATT
76832729 TGCATGT-AAATTTCCCACTTTA
1 TGCATGTCAAATTTCCCACTTTA
76832751 TGCATGTCAAATTTCCCACTTTA
1 TGCATGTCAAATTTCCCACTTTA
76832774 ATGTGTAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
22 7 0.32
23 15 0.68
ACGTcount: A:0.27, C:0.24, G:0.09, T:0.40
Consensus pattern (23 bp):
TGCATGTCAAATTTCCCACTTTA
Found at i:76833507 original size:47 final size:47
Alignment explanation
Indices: 76833426--76833661 Score: 411
Period size: 47 Copynumber: 5.0 Consensus size: 47
76833416 GTTGAATTTA
*
76833426 AAGCTTGTTAAA-TTGCTCTTAATATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
*
76833472 AAGCTTGTTAAATTTGCCCTTAATATTTCCGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
*
76833519 AAGCTTGTTAAATTTGCCTTTAATATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
76833566 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
* **
76833613 AAGCTTGTTAAATTTGCCCTTATTATTTCTGGATAAGTTACTTAGTT
1 AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
76833660 AA
1 AA
76833662 AGAAAATTTT
Statistics
Matches: 181, Mismatches: 8, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
46 12 0.07
47 169 0.93
ACGTcount: A:0.29, C:0.14, G:0.14, T:0.44
Consensus pattern (47 bp):
AAGCTTGTTAAATTTGCCCTTAATATTTCCAGATAAGTTACTTAGTT
Found at i:76834516 original size:45 final size:45
Alignment explanation
Indices: 76834452--76834624 Score: 214
Period size: 45 Copynumber: 4.0 Consensus size: 45
76834442 TATCGTACAG
*
76834452 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
*
76834497 TACTATTTGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
76834542 TACTATTCGGGCCTTCGAGCCTAGCAGGCGA-AATACCGGTGA-A
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * * *
76834585 TGA--ATTCGGG-TTTTAAACCTAGCAGGCT-GAATGCCGGTGA
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
76834625 TTTGATAAAA
Statistics
Matches: 114, Mismatches: 12, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 23 0.20
42 7 0.06
43 2 0.02
44 11 0.10
45 71 0.62
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:76838330 original size:15 final size:16
Alignment explanation
Indices: 76838312--76838341 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
76838302 AATTGTTTTA
76838312 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
76838327 TTACATAATTTCACT
1 TTACATAATTTCACT
76838342 TAATCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:76838660 original size:50 final size:50
Alignment explanation
Indices: 76838553--76838779 Score: 215
Period size: 50 Copynumber: 4.5 Consensus size: 50
76838543 TTGGTACGCA
* * * ** *
76838553 TAGTAGCCTACACTTAGTACTACACATGCGACC-AAAAAT-TCAGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATATGA-TACACG
* *
76838602 TAGTAGCCTGAACTTAGTACTACACACATGACCTAACCATATGATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATATGATACACG
* * * * *
76838652 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATATGATACACG
* * * * * *
76838702 TAGTAGCTTGCACTTAGTACTACATACGTGACCTAAAACCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATATGATACACG
* * *
76838754 TAGTAGCCTACACATAGTACTCCACA
1 TAGTAGCCTGCACTTAGTACTACACA
76838780 TGTATTCTGA
Statistics
Matches: 145, Mismatches: 29, Indels: 5
0.81 0.16 0.03
Matches are distributed among these distances:
49 28 0.19
50 83 0.57
51 2 0.01
52 32 0.22
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATATGATACACG
Found at i:76838734 original size:100 final size:100
Alignment explanation
Indices: 76838551--76838781 Score: 295
Period size: 100 Copynumber: 2.3 Consensus size: 100
76838541 ATTTGGTACG
76838551 CATAGTAGCCTACACTTAGTACTACACATGCGACCAAAAATTCAGTACACGTAGTAGCCTGAACT
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCAAAAATTCAGTACACGTAGTAGCCTGAACT
*
76838616 TAGTACTACACACATGACCT-AACCATATGATACA
66 TAGTACTACACACATGACCTAAACCATATGAAACA
* * * * * * *
76838650 CGTAGTAGCCTGCACTTAGTACTACACATGCGACC-TAACTATCTGGTACACGTAGTAGCTTGCA
1 CATAGTAGCCTACACTTAGTACTACACATGCGACCAAAAAT-TC-AGTACACGTAGTAGCCTGAA
* * * *
76838714 CTTAGTACTACATACGTGACCTAAAACCATCTTAAACA
64 CTTAGTACTACACACATGACCT-AAACCATATGAAACA
* *
76838752 CATAGTAGCCTACACATAGTACTCCACATG
1 CATAGTAGCCTACACTTAGTACTACACATG
76838782 TATTCTGACA
Statistics
Matches: 112, Mismatches: 16, Indels: 5
0.84 0.12 0.04
Matches are distributed among these distances:
98 3 0.03
99 35 0.31
100 37 0.33
102 37 0.33
ACGTcount: A:0.34, C:0.27, G:0.14, T:0.25
Consensus pattern (100 bp):
CATAGTAGCCTACACTTAGTACTACACATGCGACCAAAAATTCAGTACACGTAGTAGCCTGAACT
TAGTACTACACACATGACCTAAACCATATGAAACA
Found at i:76841716 original size:15 final size:16
Alignment explanation
Indices: 76841691--76841732 Score: 54
Period size: 15 Copynumber: 2.8 Consensus size: 16
76841681 ATAGATAACA
76841691 AGAAA-CCAAGATTA-
1 AGAAATCCAAGATTAG
*
76841705 AGAAGTCCAAGA-TAG
1 AGAAATCCAAGATTAG
76841720 AGAAATCCAAGAT
1 AGAAATCCAAGAT
76841733 ACAATATCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
14 6 0.26
15 17 0.74
ACGTcount: A:0.52, C:0.14, G:0.19, T:0.14
Consensus pattern (16 bp):
AGAAATCCAAGATTAG
Found at i:76847452 original size:16 final size:15
Alignment explanation
Indices: 76847428--76847457 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
76847418 AACTGTTTTA
76847428 TTACAAATTTCACTC
1 TTACAAATTTCACTC
76847443 TTACATAATTTCACT
1 TTACA-AATTTCACT
76847458 TAGTCCATTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (15 bp):
TTACAAATTTCACTC
Found at i:76847724 original size:50 final size:49
Alignment explanation
Indices: 76847619--76847844 Score: 202
Period size: 50 Copynumber: 4.5 Consensus size: 49
76847609 ACAGATACAC
* * * * ***
76847619 AGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGGTACACGT
1 AGTAGCCTACACTTAGTACTACACACGTGACCTAACCAT-CTAAACACGT
* *
76847668 AGTAGCCTATACTTAGTTCTACACACGTGACCTAACCATCTAATACACGT
1 AGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAA-ACACGT
* * * * * * *
76847718 AGTAGCCTGCACTTAGTACTACGCATGCGACCTAACTATTTGGAACACGT
1 AGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCT-AAACACGT
* * *
76847768 AGTAGCTTGCACTTAGTACTACACACGTGACCTAAAACCATCTTAAACACAT
1 AGTAGCCTACACTTAGTACTACACACGTGACCT--AACCATC-TAAACACGT
* *
76847820 AGTAGCCTACACATAGTGCTACACA
1 AGTAGCCTACACTTAGTACTACACA
76847845 TATGCTCTCA
Statistics
Matches: 141, Mismatches: 30, Indels: 9
0.78 0.17 0.05
Matches are distributed among these distances:
49 28 0.20
50 79 0.56
51 1 0.01
52 32 0.23
53 1 0.01
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.24
Consensus pattern (49 bp):
AGTAGCCTACACTTAGTACTACACACGTGACCTAACCATCTAAACACGT
Found at i:76847797 original size:100 final size:100
Alignment explanation
Indices: 76847619--76847845 Score: 296
Period size: 100 Copynumber: 2.3 Consensus size: 100
76847609 ACAGATACAC
* *
76847619 AGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGTACACGTAGTAGCCTATACTTAG
1 AGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGAACACGTAGTAGCCTACACTTAG
* *
76847684 TTCTACACACGTGACCT-AACCATC-TAATACACGT
66 TACTACACACGTGACCTAAACCATCTTAA-ACACAT
* * ** * *
76847718 AGTAGCCTGCACTTAGTACTACGCATGCGACCTAACTATTTGGAACACGTAGTAGCTTGCACTTA
1 AGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGGAACACGTAGTAGCCTACACTTA
76847783 GTACTACACACGTGACCTAAAACCATCTTAAACACAT
65 GTACTACACACGTGACCT-AAACCATCTTAAACACAT
* * *
76847820 AGTAGCCTACACATAGTGCTACACAT
1 AGTAGCCTGCACTTAGTACTACACAT
76847846 ATGCTCTCAC
Statistics
Matches: 110, Mismatches: 14, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
99 31 0.28
100 42 0.38
102 34 0.31
103 3 0.03
ACGTcount: A:0.32, C:0.28, G:0.15, T:0.25
Consensus pattern (100 bp):
AGTAGCCTGCACTTAGTACTACACATGCGACCAACAATCCGGAACACGTAGTAGCCTACACTTAG
TACTACACACGTGACCTAAACCATCTTAAACACAT
Found at i:76849755 original size:42 final size:42
Alignment explanation
Indices: 76849671--76849820 Score: 142
Period size: 42 Copynumber: 3.5 Consensus size: 42
76849661 ATATCTCAGA
* ** *
76849671 TATGGTCTTACATGGGATCACATATATCAATGCCATAG-CCCAGC
1 TATGGTCTTACACGAAATCAC--ATATCGATGCCAT-GTCCCAGC
* ** *
76849715 TATAGTCTTACACGATGTCCCATATCGATGCCATGTCCCAGAC
1 TATGGTCTTACACGAAATCACATATCGATGCCATGTCCCAG-C
* * *
76849758 -ATGGTCTTACACGAAATCACATATCGATGTCATATCCCAGA
1 TATGGTCTTACACGAAATCACATATCGATGCCATGTCCCAGC
*
76849799 TATGGTCTTACATGAAATCACA
1 TATGGTCTTACACGAAATCACA
76849821 CATAACCCTA
Statistics
Matches: 88, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
41 1 0.01
42 71 0.81
43 1 0.01
44 15 0.17
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (42 bp):
TATGGTCTTACACGAAATCACATATCGATGCCATGTCCCAGC
Found at i:76850594 original size:18 final size:18
Alignment explanation
Indices: 76850533--76850595 Score: 60
Period size: 18 Copynumber: 3.6 Consensus size: 18
76850523 CAACCTCCTA
76850533 TTTACTT-TCCCTCAAACT
1 TTTACTTCTCCCT-AAACT
*
76850551 TTTAC-TC-CCCAAAAACT
1 TTTACTTCTCCC-TAAACT
**
76850568 TTTTTTTCTCCCTAAACT
1 TTTACTTCTCCCTAAACT
76850586 TTTACTTCTC
1 TTTACTTCTC
76850596 ACCTTTTACT
Statistics
Matches: 35, Mismatches: 6, Indels: 8
0.71 0.12 0.16
Matches are distributed among these distances:
17 12 0.34
18 20 0.57
19 3 0.09
ACGTcount: A:0.22, C:0.32, G:0.00, T:0.46
Consensus pattern (18 bp):
TTTACTTCTCCCTAAACT
Found at i:76850838 original size:114 final size:114
Alignment explanation
Indices: 76850694--76850936 Score: 486
Period size: 114 Copynumber: 2.1 Consensus size: 114
76850684 TATTAAATTA
76850694 AATTTCACATTTTATATTATTTACTTAATTGTTTAATCATATTGAATATTTATATTAAAATTGAA
1 AATTTCACATTTTATATTATTTACTTAATTGTTTAATCATATTGAATATTTATATTAAAATTGAA
76850759 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
66 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
76850808 AATTTCACATTTTATATTATTTACTTAATTGTTTAATCATATTGAATATTTATATTAAAATTGAA
1 AATTTCACATTTTATATTATTTACTTAATTGTTTAATCATATTGAATATTTATATTAAAATTGAA
76850873 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
66 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
76850922 AATTTCACATTTTAT
1 AATTTCACATTTTAT
76850937 CTTTAAAATA
Statistics
Matches: 129, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
114 129 1.00
ACGTcount: A:0.36, C:0.07, G:0.08, T:0.49
Consensus pattern (114 bp):
AATTTCACATTTTATATTATTTACTTAATTGTTTAATCATATTGAATATTTATATTAAAATTGAA
TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
Found at i:76850974 original size:114 final size:114
Alignment explanation
Indices: 76850694--76850977 Score: 358
Period size: 114 Copynumber: 2.5 Consensus size: 114
76850684 TATTAAATTA
* * ** * * * *
76850694 AATTTCACATTTTATATTATTTACTTAATTGTTTAATCATATTGAATATTTATATTAAAATTGAA
1 AATTTCACATTTTATACTATTAAAATAATTGTTTAATAAAAGTCAATATTTATATTAAAATTGAA
76850759 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
66 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
* * ** * * * *
76850808 AATTTCACATTTTATATTATTTACTTAATTGTTTAATCATATTGAATATTTATATTAAAATTGAA
1 AATTTCACATTTTATACTATTAAAATAATTGTTTAATAAAAGTCAATATTTATATTAAAATTGAA
76850873 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
66 TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
* *
76850922 AATTTCACATTTTAT-CT-TTAAAATAACTTTTATTAA-AAAAGTCACATTTTTATATT
1 AATTTCACATTTTATACTATTAAAATAA-TTGT-TTAATAAAAGTCA-ATATTTATATT
76850978 TAATATACTT
Statistics
Matches: 157, Mismatches: 10, Indels: 6
0.91 0.06 0.03
Matches are distributed among these distances:
112 6 0.04
113 8 0.05
114 143 0.91
ACGTcount: A:0.37, C:0.07, G:0.07, T:0.49
Consensus pattern (114 bp):
AATTTCACATTTTATACTATTAAAATAATTGTTTAATAAAAGTCAATATTTATATTAAAATTGAA
TTATTAATGATGCCATAAAATATTTGTGTTAAAATTTTATGTTGGTATC
Found at i:76851728 original size:16 final size:16
Alignment explanation
Indices: 76851704--76851742 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
76851694 GGACTAGACT
76851704 TTTTATTTATTTTTAG
1 TTTTATTTATTTTTAG
* *
76851720 TTTTGTTTATTTTTTG
1 TTTTATTTATTTTTAG
76851736 TTTTATT
1 TTTTATT
76851743 GTTTATAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.13, C:0.00, G:0.08, T:0.79
Consensus pattern (16 bp):
TTTTATTTATTTTTAG
Found at i:76851954 original size:46 final size:46
Alignment explanation
Indices: 76851887--76851981 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
76851877 GGTGCTCCTC
76851887 TTTTTCAAGTATTTTCATTCTAACCCAATACTTCAGAGGTATAGGG
1 TTTTTCAAGTATTTTCATTCTAACCCAATACTTCAGAGGTATAGGG
* *
76851933 TTTTTCAAGTATTTTCATTCTAACCCACTACTTTAGAGGTATAGGG
1 TTTTTCAAGTATTTTCATTCTAACCCAATACTTCAGAGGTATAGGG
76851979 TTT
1 TTT
76851982 GTCGCTTTAA
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.26, C:0.17, G:0.15, T:0.42
Consensus pattern (46 bp):
TTTTTCAAGTATTTTCATTCTAACCCAATACTTCAGAGGTATAGGG
Found at i:76852155 original size:95 final size:95
Alignment explanation
Indices: 76851986--76852291 Score: 328
Period size: 95 Copynumber: 3.3 Consensus size: 95
76851976 GGGTTTGTCG
* * * *
76851986 CTTTAATCTGCTCCACTGCAACTTTAGAGAGATAAGATTTGTAATCTTATAGCTTAATCTGTTCC
1 CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAA-CTGATACCTTAATCTATTCC
* *
76852051 ACTGTAACTTCAGGGGAAATAAGATTCTC-AT
65 ACTGCAACTTCA-GGGAAATAAGATTCACTAT
* * *
76852082 -TTTCAATCTGCGCCACT-CAACTTCAGGGAGATAAGATTTGTAACTGGTACCTTTAATCTATTC
1 CTTT-AATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTGATACC-TTAATCTATTC
76852145 CACTGCAACTTCAGGGAAATAAGATTCACTAT
64 CACTGCAACTTCAGGGAAATAAGATTCACTAT
*
76852177 CTTTAATCTGCTCCACTGCAACTTCA-ATGAGATAAGATTTGTAACT--T--C--AATCTACTCC
1 CTTTAATCTGCTCCACTGCAACTTCAGA-GAGATAAGATTTGTAACTGATACCTTAATCTATTCC
* * * ** **
76852235 ACTGCAATTTCAAGGAGATAAGATT-TGTGG
65 ACTGCAACTTCAGGGAAATAAGATTCACTAT
*
76852265 CTTTAATCTGCTCCACTGTAACTTCAG
1 CTTTAATCTGCTCCACTGCAACTTCAG
76852292 GAATATAAGA
Statistics
Matches: 183, Mismatches: 20, Indels: 21
0.82 0.09 0.09
Matches are distributed among these distances:
88 26 0.14
89 31 0.17
92 1 0.01
94 21 0.11
95 63 0.34
96 41 0.22
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (95 bp):
CTTTAATCTGCTCCACTGCAACTTCAGAGAGATAAGATTTGTAACTGATACCTTAATCTATTCCA
CTGCAACTTCAGGGAAATAAGATTCACTAT
Found at i:76852196 original size:45 final size:45
Alignment explanation
Indices: 76851986--76852304 Score: 200
Period size: 44 Copynumber: 6.9 Consensus size: 45
76851976 GGGTTTGTCG
* * *
76851986 CTTTAATCTGCTCCACTGCAACTTTAGAGAGATAAGATTTGTAATCTTAT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TCA-C-TAT
* * * *
76852036 AGC-TTAATCTGTTCCACTGTAACTTCAGGGGAAATAAGATTCTC-AT
1 --CTTTAATCTGCTCCACTGCAACTTCA-GGGAGATAAGATTCACTAT
* * *
76852082 -TTTCAATCTGCGCCACT-CAACTTCAGGGAGATAAGATTTGTAACTGGTAC
1 CTTT-AATCTGCTCCACTGCAACTTCAGGGAGATAAGA--T-TCAC---TAT
** *
76852132 CTTTAATCTATTCCACTGCAACTTCAGGGAAATAAGATTCACTAT
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTAT
** ** *
76852177 CTTTAATCTGCTCCACTGCAACTTCAATGAGATAAGATT-TGTAA
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTAT
* * * * ** **
76852221 CTTCAATCTACTCCACTGCAATTTCAAGGAGATAAGATT-TGTGG
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTAT
* * *
76852265 CTTTAATCTGCTCCACTGTAACTTCAGGAATATAAGATTC
1 CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTC
76852305 GCCATGATGA
Statistics
Matches: 213, Mismatches: 41, Indels: 33
0.74 0.14 0.11
Matches are distributed among these distances:
43 10 0.05
44 81 0.38
45 48 0.23
46 4 0.02
48 4 0.02
49 2 0.01
50 12 0.06
51 42 0.20
52 10 0.05
ACGTcount: A:0.30, C:0.21, G:0.15, T:0.34
Consensus pattern (45 bp):
CTTTAATCTGCTCCACTGCAACTTCAGGGAGATAAGATTCACTAT
Found at i:76860381 original size:19 final size:20
Alignment explanation
Indices: 76860365--76860409 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 20
76860355 TTATGAAACT
*
76860365 TAATGCATAT-AATGAAATG
1 TAATGCAGATGAATGAAATG
76860384 TAATGCAGATGAATGAAATG
1 TAATGCAGATGAATGAAATG
76860404 -AATGCA
1 TAATGCA
76860410 AAAAAAGGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 15 0.62
20 9 0.38
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.27
Consensus pattern (20 bp):
TAATGCAGATGAATGAAATG
Found at i:76862744 original size:22 final size:22
Alignment explanation
Indices: 76862717--76862760 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
76862707 AAAAATTACC
*
76862717 AAAATTAATCAAAATTTATTAT
1 AAAATTAATCAAAATTAATTAT
*
76862739 AAAATTAATTAAAATTAATTAT
1 AAAATTAATCAAAATTAATTAT
76862761 TCTAATAATT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.41
Consensus pattern (22 bp):
AAAATTAATCAAAATTAATTAT
Found at i:76862758 original size:10 final size:10
Alignment explanation
Indices: 76862717--76862759 Score: 50
Period size: 10 Copynumber: 4.1 Consensus size: 10
76862707 AAAAATTACC
*
76862717 AAAATTAATC
1 AAAATTAATT
*
76862727 AAAATTTATTAT
1 AAAA-TTAAT-T
76862739 AAAATTAATT
1 AAAATTAATT
76862749 AAAATTAATT
1 AAAATTAATT
76862759 A
1 A
76862760 TTCTAATAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
10 16 0.57
11 8 0.29
12 4 0.14
ACGTcount: A:0.58, C:0.02, G:0.00, T:0.40
Consensus pattern (10 bp):
AAAATTAATT
Found at i:76866146 original size:8 final size:8
Alignment explanation
Indices: 76866133--76866158 Score: 52
Period size: 8 Copynumber: 3.2 Consensus size: 8
76866123 GCAAAGAAAT
76866133 AATAATAA
1 AATAATAA
76866141 AATAATAA
1 AATAATAA
76866149 AATAATAA
1 AATAATAA
76866157 AA
1 AA
76866159 ATAAAAGTTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 18 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (8 bp):
AATAATAA
Found at i:76869563 original size:9 final size:9
Alignment explanation
Indices: 76869549--76869581 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
76869539 GTTAATTGAA
76869549 TCGAGTTAT
1 TCGAGTTAT
76869558 TCGAGTTAT
1 TCGAGTTAT
*
76869567 TCAAGTTAT
1 TCGAGTTAT
76869576 TCGAGT
1 TCGAGT
76869582 CAACTCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.24, C:0.12, G:0.21, T:0.42
Consensus pattern (9 bp):
TCGAGTTAT
Found at i:76869760 original size:19 final size:19
Alignment explanation
Indices: 76869736--76869784 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 19
76869726 AAAAAATAAA
76869736 AAAAATCAAATTAATTTTC
1 AAAAATCAAATTAATTTTC
*
76869755 AAAAATTCAAATTAATTTTT
1 AAAAA-TCAAATTAATTTTC
*
76869775 AAAATTCAAA
1 AAAAATCAAA
76869785 ATATTTATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
19 10 0.37
20 17 0.63
ACGTcount: A:0.55, C:0.08, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAAATCAAATTAATTTTC
Found at i:76869786 original size:20 final size:20
Alignment explanation
Indices: 76869743--76869807 Score: 73
Period size: 20 Copynumber: 3.2 Consensus size: 20
76869733 AAAAAAAATC
76869743 AAATTAATTTTCAAAAATTC-
1 AAATTAATTTT-AAAAATTCA
*
76869763 AAATTAATTTTTAAAATTCA
1 AAATTAATTTTAAAAATTCA
76869783 AAA-T-ATTTATAAAAATTCTA
1 AAATTAATTT-TAAAAATTC-A
76869803 AAATT
1 AAATT
76869808 TATATTTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
18 4 0.10
19 16 0.41
20 18 0.46
21 1 0.03
ACGTcount: A:0.52, C:0.06, G:0.00, T:0.42
Consensus pattern (20 bp):
AAATTAATTTTAAAAATTCA
Found at i:76869797 original size:19 final size:19
Alignment explanation
Indices: 76869755--76869811 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
76869745 ATTAATTTTC
*
76869755 AAAAATTCAAATTAATTT-T
1 AAAAATTCAAAAT-ATTTAT
*
76869774 TAAAATTCAAAATATTTAT
1 AAAAATTCAAAATATTTAT
*
76869793 AAAAATTCTAAA-ATTTAT
1 AAAAATTCAAAATATTTAT
76869811 A
1 A
76869812 TTTTTTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
18 11 0.33
19 22 0.67
ACGTcount: A:0.54, C:0.05, G:0.00, T:0.40
Consensus pattern (19 bp):
AAAAATTCAAAATATTTAT
Found at i:76873822 original size:4 final size:4
Alignment explanation
Indices: 76873813--76873839 Score: 54
Period size: 4 Copynumber: 6.8 Consensus size: 4
76873803 GGCATAAGCA
76873813 AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAA
76873840 AGAGAAAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 23 1.00
ACGTcount: A:0.78, C:0.00, G:0.22, T:0.00
Consensus pattern (4 bp):
AAAG
Found at i:76876740 original size:6 final size:6
Alignment explanation
Indices: 76876729--76876780 Score: 104
Period size: 6 Copynumber: 8.7 Consensus size: 6
76876719 ATTTATTTTA
76876729 AATACT AATACT AATACT AATACT AATACT AATACT AATACT AATACT
1 AATACT AATACT AATACT AATACT AATACT AATACT AATACT AATACT
76876777 AATA
1 AATA
76876781 GTAAATTAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 46 1.00
ACGTcount: A:0.52, C:0.15, G:0.00, T:0.33
Consensus pattern (6 bp):
AATACT
Found at i:76877055 original size:19 final size:19
Alignment explanation
Indices: 76877031--76877084 Score: 56
Period size: 18 Copynumber: 2.9 Consensus size: 19
76877021 TAATCAATTT
76877031 AATTTTTTTTAAATTTTAC
1 AATTTTTTTTAAATTTTAC
* ** *
76877050 AGTTTTTAAT-AATTTTAT
1 AATTTTTTTTAAATTTTAC
*
76877068 AATTTTTTTAAAATTTT
1 AATTTTTTTTAAATTTT
76877085 TAAAAAATTA
Statistics
Matches: 26, Mismatches: 8, Indels: 2
0.72 0.22 0.06
Matches are distributed among these distances:
18 13 0.50
19 13 0.50
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (19 bp):
AATTTTTTTTAAATTTTAC
Found at i:76877907 original size:19 final size:19
Alignment explanation
Indices: 76877878--76877914 Score: 58
Period size: 18 Copynumber: 1.9 Consensus size: 19
76877868 CGATTCAAAG
76877878 AAAATAAATTATTAAAAATT
1 AAAATAAATTA-TAAAAATT
76877898 AAAA-AAATTATAAAAAT
1 AAAATAAATTATAAAAAT
76877915 CGGTTCAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
19 6 0.35
20 4 0.24
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (19 bp):
AAAATAAATTATAAAAATT
Found at i:76878601 original size:17 final size:16
Alignment explanation
Indices: 76878576--76878624 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 16
76878566 TATCATTGAA
*
76878576 TTTTGAAATTTTGAAAT
1 TTTTAAAATTTT-AAAT
**
76878593 TTTTAAAATTATTTTAT
1 TTTTAAAATT-TTAAAT
76878610 TTTTAAAATTTTAAA
1 TTTTAAAATTTTAAA
76878625 GAGTTTTTGT
Statistics
Matches: 26, Mismatches: 5, Indels: 3
0.76 0.15 0.09
Matches are distributed among these distances:
16 3 0.12
17 21 0.81
18 2 0.08
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (16 bp):
TTTTAAAATTTTAAAT
Found at i:76882630 original size:26 final size:26
Alignment explanation
Indices: 76882591--76882698 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
76882581 TATCCATAAT
76882591 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
76882617 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76882643 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
76882669 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
76882695 TGAT
1 TGAT
76882699 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:76886780 original size:26 final size:26
Alignment explanation
Indices: 76886750--76886800 Score: 68
Period size: 26 Copynumber: 2.0 Consensus size: 26
76886740 AAAGTTGAAG
* *
76886750 GCCAAAGTAATAAAAATAAA-ATTAGA
1 GCCAAAATAACAAAAA-AAACATTAGA
76886776 GCCAAAATAACAAAAAAAACATTAG
1 GCCAAAATAACAAAAAAAACATTAG
76886801 GGGCTAAATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 3 0.14
26 19 0.86
ACGTcount: A:0.63, C:0.12, G:0.10, T:0.16
Consensus pattern (26 bp):
GCCAAAATAACAAAAAAAACATTAGA
Found at i:76890910 original size:41 final size:41
Alignment explanation
Indices: 76890853--76890935 Score: 166
Period size: 41 Copynumber: 2.0 Consensus size: 41
76890843 TTTCCCAAAT
76890853 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
1 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
76890894 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
1 ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
76890935 A
1 A
76890936 GAAAAGAGTG
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.45, C:0.22, G:0.05, T:0.29
Consensus pattern (41 bp):
ACCTTACAATACAATCAATTAAACTCTCTAAAGAATGCTTA
Found at i:76896249 original size:41 final size:42
Alignment explanation
Indices: 76896133--76896269 Score: 188
Period size: 42 Copynumber: 3.3 Consensus size: 42
76896123 CGAAACTATA
*
76896133 TGTAAGACCATATCTAGGATATGACATCATTATGAGACTTT-G
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGA-TTTCG
* * * *
76896175 TGTAAGACCATGTCTGGGATATGGCATCGATATGAGATTTCG
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGATTTCG
* *
76896217 TGTAAGACCATAT-TTGGATATGACATCAATATGAGACTTCG
1 TGTAAGACCATATCTAGGATATGACATCAATATGAGATTTCG
76896258 TGTAAGACCATA
1 TGTAAGACCATA
76896270 GCTGGGCTAT
Statistics
Matches: 84, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
41 39 0.46
42 45 0.54
ACGTcount: A:0.32, C:0.15, G:0.22, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGATATGACATCAATATGAGATTTCG
Found at i:76906135 original size:28 final size:29
Alignment explanation
Indices: 76906100--76906200 Score: 141
Period size: 29 Copynumber: 3.5 Consensus size: 29
76906090 TATAGTAAGT
* * *
76906100 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
* *
76906128 TCACACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
76906157 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
76906186 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76906201 CAATTTCATG
Statistics
Matches: 64, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
28 18 0.28
29 46 0.72
ACGTcount: A:0.31, C:0.29, G:0.14, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:76906556 original size:78 final size:78
Alignment explanation
Indices: 76906427--76906584 Score: 298
Period size: 78 Copynumber: 2.0 Consensus size: 78
76906417 TCACCATGAA
*
76906427 AATCTCAACTTTCTTGACATTACCAAGAGTGCATCCACAATTTAGCTTAGCATATTATAAATCCA
1 AATCTCAACTTTCTTGACATTACCAAGAGTGCATCCACAATTTAACTTAGCATATTATAAATCCA
76906492 AATCAACAAATTC
66 AATCAACAAATTC
*
76906505 AATCTCAACTTTCTTGACCTTACCAAGAGTGCATCCACAATTTAACTTAGCATATTATAAATCCA
1 AATCTCAACTTTCTTGACATTACCAAGAGTGCATCCACAATTTAACTTAGCATATTATAAATCCA
76906570 AATCAACAAATTC
66 AATCAACAAATTC
76906583 AA
1 AA
76906585 AGCTTACCTC
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
78 78 1.00
ACGTcount: A:0.39, C:0.23, G:0.07, T:0.30
Consensus pattern (78 bp):
AATCTCAACTTTCTTGACATTACCAAGAGTGCATCCACAATTTAACTTAGCATATTATAAATCCA
AATCAACAAATTC
Found at i:76913509 original size:28 final size:29
Alignment explanation
Indices: 76913476--76913576 Score: 150
Period size: 29 Copynumber: 3.5 Consensus size: 29
76913466 TATAGTAAGT
* * *
76913476 CCGCACACTTAGTGTTATATAA-TCGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
76913504 TCGCACACTTAGTGCTATACAACTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
*
76913533 CCGCACACTTAGTGCTATACAATTTGAAC
1 CCGCACACTTAGTGCTATACAACTTGAAC
76913562 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
76913577 CAATTTCATG
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
28 19 0.29
29 47 0.71
ACGTcount: A:0.30, C:0.29, G:0.15, T:0.27
Consensus pattern (29 bp):
CCGCACACTTAGTGCTATACAACTTGAAC
Found at i:76918741 original size:6 final size:6
Alignment explanation
Indices: 76918732--76918778 Score: 78
Period size: 6 Copynumber: 8.0 Consensus size: 6
76918722 AGGTGAAATT
*
76918732 AATAAA AATAAA AATAAA AATAAA AATAAA AAT-AA AATAAA ATTAAA
1 AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA AATAAA
76918779 CATCATCATC
Statistics
Matches: 39, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
5 5 0.13
6 34 0.87
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (6 bp):
AATAAA
Found at i:76928078 original size:29 final size:29
Alignment explanation
Indices: 76928043--76928112 Score: 131
Period size: 29 Copynumber: 2.4 Consensus size: 29
76928033 AACTTTGGTA
76928043 TAATGGCATGTATAGGTTAATTTGGCCAT
1 TAATGGCATGTATAGGTTAATTTGGCCAT
*
76928072 TGATGGCATGTATAGGTTAATTTGGCCAT
1 TAATGGCATGTATAGGTTAATTTGGCCAT
76928101 TAATGGCATGTA
1 TAATGGCATGTA
76928113 AATGTTTTGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 39 1.00
ACGTcount: A:0.27, C:0.10, G:0.26, T:0.37
Consensus pattern (29 bp):
TAATGGCATGTATAGGTTAATTTGGCCAT
Found at i:76928685 original size:52 final size:52
Alignment explanation
Indices: 76928629--76928738 Score: 166
Period size: 52 Copynumber: 2.1 Consensus size: 52
76928619 CTTGGTTGTT
* **
76928629 TGACCCTTATACCTACACATGGCCTATCACACGGGCGTGTAACTTGGCTATG
1 TGACCCCTATACCTACACACAGCCTATCACACGGGCGTGTAACTTGGCTATG
* * *
76928681 TGACCCCTGTACCTACACACAGCCTATCACACGGGCGTGTGACTTGGCTGTG
1 TGACCCCTATACCTACACACAGCCTATCACACGGGCGTGTAACTTGGCTATG
76928733 TGACCC
1 TGACCC
76928739 AAGTCAGAGA
Statistics
Matches: 52, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.21, C:0.32, G:0.23, T:0.25
Consensus pattern (52 bp):
TGACCCCTATACCTACACACAGCCTATCACACGGGCGTGTAACTTGGCTATG
Found at i:76938478 original size:30 final size:30
Alignment explanation
Indices: 76938442--76938498 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
76938432 ATGGCCATGA
**
76938442 CACACGGGTGTGTGG-TCTACCCGTGTGTCG
1 CACACGGGCATGTGGATC-ACCCGTGTGTCG
76938472 CACACGGGCATGTGGATCACCCGTGTG
1 CACACGGGCATGTGGATCACCCGTGTG
76938499 GAAGTGCTTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.14, C:0.28, G:0.35, T:0.23
Consensus pattern (30 bp):
CACACGGGCATGTGGATCACCCGTGTGTCG
Found at i:76943623 original size:15 final size:15
Alignment explanation
Indices: 76943580--76943624 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
76943570 GGTATTGTAA
**
76943580 CTTGGATTTCTGAAT
1 CTTGGATTTCTTTAT
76943595 CTTGAGAGTTTCTTTAT
1 CTTG-GA-TTTCTTTAT
76943612 CTTGGATTTCTTT
1 CTTGGATTTCTTT
76943625 GTCTCGGACT
Statistics
Matches: 26, Mismatches: 2, Indels: 4
0.81 0.06 0.12
Matches are distributed among these distances:
15 11 0.42
16 4 0.15
17 11 0.42
ACGTcount: A:0.16, C:0.13, G:0.18, T:0.53
Consensus pattern (15 bp):
CTTGGATTTCTTTAT
Found at i:76946140 original size:79 final size:81
Alignment explanation
Indices: 76946004--76946186 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
76945994 TCGAATGATG
* *
76946004 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
76946068 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
76946083 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
76946145 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
76946163 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
76946187 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:76946202 original size:40 final size:40
Alignment explanation
Indices: 76946005--76946188 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
76945995 CGAATGATGT
* * * *
76946005 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
76946045 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
76946085 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76946123 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76946164 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76946189 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 34 0.27
40 80 0.65
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76946210 original size:79 final size:79
Alignment explanation
Indices: 76946057--76946221 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
76946047 GGACTAAGAT
* **
76946057 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
76946122 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
76946136 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
76946199 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
76946215 CCGAAGG
1 CCGAAGG
76946222 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.65
80 24 0.32
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:76953534 original size:47 final size:47
Alignment explanation
Indices: 76953427--76953808 Score: 665
Period size: 47 Copynumber: 8.1 Consensus size: 47
76953417 GAAATGATAG
76953427 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
*
76953476 TAAGGCTTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76953523 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76953570 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76953617 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76953664 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76953711 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
* * * * * * * *
76953758 CAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
76953805 TAAG
1 TAAG
76953809 TCCCGAAGGG
Statistics
Matches: 321, Mismatches: 12, Indels: 2
0.96 0.04 0.01
Matches are distributed among these distances:
47 286 0.89
49 35 0.11
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:76963097 original size:79 final size:82
Alignment explanation
Indices: 76962956--76963145 Score: 248
Period size: 79 Copynumber: 2.4 Consensus size: 82
76962946 GTTATTCGAA
* *
76962956 TAATGTCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
76963020 GCATTTGTGCGAGTTAC
66 GCATTTGTGCGAGTTAC
* * * **
76963037 TAAT-TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAA
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAA
76963098 GGCATTTGTGCGAGTTAC
65 GGCATTTGTGCGAGTTAC
* *
76963116 T-ATAACCGGGCTATGTCCCGAAGGCATTTG
1 TAATATCCGGGCTAAGTCCCGAAGGCATTTG
76963146 AACGAGGAGC
Statistics
Matches: 97, Mismatches: 8, Indels: 9
0.85 0.07 0.08
Matches are distributed among these distances:
78 3 0.03
79 58 0.60
80 32 0.33
81 4 0.04
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.26
Consensus pattern (82 bp):
TAATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAG
GCATTTGTGCGAGTTAC
Found at i:76963159 original size:40 final size:40
Alignment explanation
Indices: 76962962--76963145 Score: 225
Period size: 40 Copynumber: 4.6 Consensus size: 40
76962952 CGAATAATGT
* * * *
76962962 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
76963002 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
76963042 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76963080 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
76963121 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
76963146 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 14
0.85 0.06 0.09
Matches are distributed among these distances:
39 36 0.28
40 82 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:76963167 original size:79 final size:79
Alignment explanation
Indices: 76962962--76963168 Score: 208
Period size: 79 Copynumber: 2.6 Consensus size: 79
76962952 CGAATAATGT
** * * * **
76962962 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
*
76963025 TGTGCGAGTTACTAATT
63 TGTGCGAGTTACTAATA
** *
76963042 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
76963107 GCGAGTTACT-ATAA
66 GCGAGTTACTAAT-A
* *
76963121 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAA
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAA
76963169 ATTCTGAAGG
Statistics
Matches: 110, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
78 3 0.03
79 65 0.59
80 42 0.38
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
GCGAGTTACTAATA
Found at i:76975154 original size:28 final size:28
Alignment explanation
Indices: 76975091--76975272 Score: 303
Period size: 28 Copynumber: 6.5 Consensus size: 28
76975081 ATATTAAGTC
* *
76975091 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
76975118 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
76975146 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
76975174 CGCACACTTAGTGCTACATAATCAAATT
1 CGCACACTTAGTGCTACATAATCAAACT
*
76975202 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
76975230 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
76975258 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
76975273 GTACAATTTA
Statistics
Matches: 149, Mismatches: 5, Indels: 1
0.96 0.03 0.01
Matches are distributed among these distances:
27 22 0.15
28 127 0.85
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:76978185 original size:9 final size:9
Alignment explanation
Indices: 76978171--76978200 Score: 60
Period size: 9 Copynumber: 3.3 Consensus size: 9
76978161 ACCAAACCGA
76978171 AAATGATAC
1 AAATGATAC
76978180 AAATGATAC
1 AAATGATAC
76978189 AAATGATAC
1 AAATGATAC
76978198 AAA
1 AAA
76978201 ATAATCTGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.60, C:0.10, G:0.10, T:0.20
Consensus pattern (9 bp):
AAATGATAC
Found at i:76980890 original size:20 final size:20
Alignment explanation
Indices: 76980857--76980906 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
76980847 CAATCATGTA
76980857 GGTATCGATACTAGAATATG
1 GGTATCGATACTAGAATATG
* *
76980877 GGTATTGATTCTAGAATATG
1 GGTATCGATACTAGAATATG
76980897 GGTATCGATA
1 GGTATCGATA
76980907 TTTTTCTGGC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (20 bp):
GGTATCGATACTAGAATATG
Found at i:76982220 original size:65 final size:65
Alignment explanation
Indices: 76982116--76982261 Score: 256
Period size: 65 Copynumber: 2.2 Consensus size: 65
76982106 GATACACGGA
**
76982116 TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAGTATAAAGCTAACAC
1 TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAACATAAAGCTAACAC
*
76982181 TCTCCAACACACCAAATCACTCATAGAGCCGAACATATCCCAAAAGTGAAACATAAAGCTAACAC
1 TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAACATAAAGCTAACAC
*
76982246 TCTTCAACACACCAAA
1 TCTCCAACACACCAAA
76982262 CATGTCCCTT
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 77 1.00
ACGTcount: A:0.45, C:0.31, G:0.08, T:0.16
Consensus pattern (65 bp):
TCTCCAACACACCAAATCACTCATAGAGCCAAACATATCCCAAAAGTGAAACATAAAGCTAACAC
Found at i:76983024 original size:34 final size:35
Alignment explanation
Indices: 76982978--76983059 Score: 105
Period size: 34 Copynumber: 2.4 Consensus size: 35
76982968 CCGAACAGTC
*
76982978 TGGGCCTAAGCCCATAT-CAGTAGCAATATTAGTG
1 TGGGCCTTAGCCCATATACAGTAGCAATATTAGTG
* * * *
76983012 TGGGCCTTAGCCC-TTTACAGTTGCAGTGTTAGTG
1 TGGGCCTTAGCCCATATACAGTAGCAATATTAGTG
76983046 TGGGCCTTAGCCCA
1 TGGGCCTTAGCCCA
76983060 ATTTAGTACA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 2 0.05
34 39 0.95
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (35 bp):
TGGGCCTTAGCCCATATACAGTAGCAATATTAGTG
Found at i:76992636 original size:22 final size:22
Alignment explanation
Indices: 76992600--76992652 Score: 63
Period size: 22 Copynumber: 2.3 Consensus size: 22
76992590 ACTCCTCAAC
76992600 TCCCCATAATCATCTCCCAA-AAA
1 TCCCCATAA--ATCTCCCAACAAA
*
76992623 TCCTCCATAAATCTCTCAACAAA
1 TCC-CCATAAATCTCCCAACAAA
76992646 TCCCCAT
1 TCCCCAT
76992653 CTATCCACAT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
22 12 0.44
23 9 0.33
24 6 0.22
ACGTcount: A:0.36, C:0.40, G:0.00, T:0.25
Consensus pattern (22 bp):
TCCCCATAAATCTCCCAACAAA
Found at i:76994069 original size:27 final size:27
Alignment explanation
Indices: 76994039--76994109 Score: 70
Period size: 29 Copynumber: 2.6 Consensus size: 27
76994029 GTGTACTTCG
**
76994039 TATATATTACCTTTGCGGCATACTTTA
1 TATATATTACCTTTGCGGCATACACTA
* **
76994066 TATACATGTAGCCTTTATGGCATACACTA
1 TATATAT-TA-CCTTTGCGGCATACACTA
*
76994095 TATATATAACCTTTG
1 TATATATTACCTTTG
76994110 TGGTGTACTC
Statistics
Matches: 34, Mismatches: 8, Indels: 4
0.74 0.17 0.09
Matches are distributed among these distances:
27 11 0.32
28 3 0.09
29 20 0.59
ACGTcount: A:0.30, C:0.18, G:0.11, T:0.41
Consensus pattern (27 bp):
TATATATTACCTTTGCGGCATACACTA
Found at i:76997759 original size:47 final size:47
Alignment explanation
Indices: 76997681--76998595 Score: 1722
Period size: 47 Copynumber: 19.5 Consensus size: 47
76997671 CCCTTCGGGA
* * * * * * * *
76997681 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
* * * *
76997728 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCACTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76997775 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76997822 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76997869 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76997916 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76997963 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998010 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998057 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998104 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998151 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998198 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998245 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998292 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998339 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998386 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998433 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998480 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998527 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
76998574 CTTATCACATATATACACTTTC
1 CTTATCACATATATACACTTTC
76998596 TTGGCTGAAT
Statistics
Matches: 856, Mismatches: 12, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 856 1.00
ACGTcount: A:0.31, C:0.30, G:0.07, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGACCATTAGGC
Found at i:77005919 original size:43 final size:43
Alignment explanation
Indices: 77005835--77005920 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
77005825 AAATCTTACA
* **
77005835 ATGCCAATGTCCCAGACATGGTCTTACATGTAGTCACATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACATGTACACACATATCG
* *
77005878 ATGCCACTGTCCCAGACAAGGTCTTAC-TCGTACACATATATCG
1 ATGCCAATGTCCCAGACAAGGTCTTACAT-GTACACACATATCG
77005921 GAGTCACATA
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.27
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACAAGGTCTTACATGTACACACATATCG
Found at i:77007553 original size:43 final size:43
Alignment explanation
Indices: 77007459--77007577 Score: 134
Period size: 43 Copynumber: 2.8 Consensus size: 43
77007449 GAAGTTTGAA
* ** * *
77007459 CTCGTTGAGTGGTCCGAGTTCATGATATATGTG-GCATCTGAG
1 CTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGCATCCGAG
* ** *
77007501 CTCGCTGAGTGGTTTGAGTTCATTATGGATGCGAGCATCCGAG
1 CTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGCATCCGAG
77007544 CTCGTTGAGTAGG-CCGAGTTCATAATGGATGCGA
1 CTCGTTGAGT-GGTCCGAGTTCATAATGGATGCGA
77007578 TACATGTGAT
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
42 26 0.41
43 35 0.56
44 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.32, T:0.30
Consensus pattern (43 bp):
CTCGTTGAGTGGTCCGAGTTCATAATGGATGCGAGCATCCGAG
Found at i:77027619 original size:47 final size:46
Alignment explanation
Indices: 77027543--77027670 Score: 193
Period size: 47 Copynumber: 2.7 Consensus size: 46
77027533 AATTGATAAG
*
77027543 TACCTATACCATGGGCCGTAGCCATATCAAGGTAGCTCCTCTCAAAA
1 TACCTATACCAT-GGCCGTAGCCAAATCAAGGTAGCTCCTCTCAAAA
* *
77027590 TACCTATACCATGGCTCATAGACAAATCAAGGTAGCTCCTCTCAAAA
1 TACCTATACCATGGC-CGTAGCCAAATCAAGGTAGCTCCTCTCAAAA
*
77027637 TACCTATATCATGGCCCGTAGCCAAATCAAGGTA
1 TACCTATACCATGG-CCGTAGCCAAATCAAGGTA
77027671 TTATTCACAC
Statistics
Matches: 73, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
46 3 0.04
47 69 0.95
48 1 0.01
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (46 bp):
TACCTATACCATGGCCGTAGCCAAATCAAGGTAGCTCCTCTCAAAA
Found at i:77028564 original size:6 final size:6
Alignment explanation
Indices: 77028553--77028579 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
77028543 CAATATATAA
77028553 TTTGGT TTTGGT TTTGGT TTTGGT TTT
1 TTTGGT TTTGGT TTTGGT TTTGGT TTT
77028580 AATTAAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.00, G:0.30, T:0.70
Consensus pattern (6 bp):
TTTGGT
Found at i:77030041 original size:24 final size:24
Alignment explanation
Indices: 77030014--77030059 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
77030004 CCATAATATG
*
77030014 GAAGTTCACAAAGAACCTTATCAA
1 GAAGTTCACAAAGAACCATATCAA
77030038 GAAGTTCACAAAGAACCATATC
1 GAAGTTCACAAAGAACCATATC
77030060 GGAAAGCTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.13, T:0.20
Consensus pattern (24 bp):
GAAGTTCACAAAGAACCATATCAA
Found at i:77030134 original size:27 final size:26
Alignment explanation
Indices: 77030104--77030170 Score: 82
Period size: 27 Copynumber: 2.6 Consensus size: 26
77030094 CATTATCAGA
*
77030104 AAGCTCATAAAGAGCCAATTTAACAGG
1 AAGCTCATAAAGAGCC-ATATAACAGG
* *
77030131 AAGCTCACAAAGAGCCATATAACGGG
1 AAGCTCATAAAGAGCCATATAACAGG
*
77030157 ATGCTCAT-AAGAGC
1 AAGCTCATAAAGAGC
77030171 TAAGGTGTCT
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
25 6 0.17
26 14 0.40
27 15 0.43
ACGTcount: A:0.42, C:0.21, G:0.21, T:0.16
Consensus pattern (26 bp):
AAGCTCATAAAGAGCCATATAACAGG
Found at i:77037904 original size:49 final size:50
Alignment explanation
Indices: 77037798--77037909 Score: 122
Period size: 49 Copynumber: 2.3 Consensus size: 50
77037788 CCGGGCTATA
* * * **
77037798 TAACGGGAAGCTCATAAGAGCCATAATTAGGAAGTTCACAAAGAACTTTG
1 TAACAGGAAGCTCATAAGAGCCATAATCAGGAAGCTCACAAAGAACCATG
* *
77037848 -AATCAGGAAGCTCATGAAGAGCC-T-ATCGGGAAGCTCACAAAGAGCCATG
1 TAA-CAGGAAGCTCAT-AAGAGCCATAATCAGGAAGCTCACAAAGAACCATG
77037897 TAACAGGAAGCTC
1 TAACAGGAAGCTC
77037910 CGGGTAGCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 7
0.79 0.11 0.11
Matches are distributed among these distances:
49 31 0.60
50 14 0.27
51 7 0.13
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (50 bp):
TAACAGGAAGCTCATAAGAGCCATAATCAGGAAGCTCACAAAGAACCATG
Found at i:77050343 original size:24 final size:24
Alignment explanation
Indices: 77050306--77050372 Score: 98
Period size: 24 Copynumber: 2.8 Consensus size: 24
77050296 GGAAGCTCAT
*
77050306 AAGAGCCATAATCGAGAAGTTCACA
1 AAGAACCAT-ATCGAGAAGTTCACA
* *
77050331 AAGAACCTTATCGGGAAGTTCACA
1 AAGAACCATATCGAGAAGTTCACA
77050355 AAGAACCATATCGAGAAG
1 AAGAACCATATCGAGAAG
77050373 CTCTGGATAG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
24 30 0.81
25 7 0.19
ACGTcount: A:0.43, C:0.19, G:0.21, T:0.16
Consensus pattern (24 bp):
AAGAACCATATCGAGAAGTTCACA
Found at i:77050447 original size:27 final size:27
Alignment explanation
Indices: 77050409--77050460 Score: 86
Period size: 27 Copynumber: 1.9 Consensus size: 27
77050399 CAAGCTAGCA
* *
77050409 TTAATGGGAAGCTCATAAAGAGCCAAT
1 TTAATGGAAAGCTCAGAAAGAGCCAAT
77050436 TTAATGGAAAGCTCAGAAAGAGCCA
1 TTAATGGAAAGCTCAGAAAGAGCCA
77050461 TATAATAGGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.42, C:0.15, G:0.23, T:0.19
Consensus pattern (27 bp):
TTAATGGAAAGCTCAGAAAGAGCCAAT
Found at i:77050466 original size:26 final size:27
Alignment explanation
Indices: 77050410--77050466 Score: 80
Period size: 27 Copynumber: 2.1 Consensus size: 27
77050400 AAGCTAGCAT
* * *
77050410 TAATGGGAAGCTCATAAAGAGCCAATT
1 TAATGGAAAGCTCAGAAAGAGCCAATA
77050437 TAATGGAAAGCTCAGAAAGAGCC-ATA
1 TAATGGAAAGCTCAGAAAGAGCCAATA
77050463 TAAT
1 TAAT
77050467 AGGATGCTCA
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
26 6 0.22
27 21 0.78
ACGTcount: A:0.44, C:0.14, G:0.21, T:0.21
Consensus pattern (27 bp):
TAATGGAAAGCTCAGAAAGAGCCAATA
Found at i:77050475 original size:26 final size:26
Alignment explanation
Indices: 77050410--77050476 Score: 73
Period size: 27 Copynumber: 2.5 Consensus size: 26
77050400 AAGCTAGCAT
* *
77050410 TAATGGGAAGCTCATAAAGAGCCAATT
1 TAAT-GGAAGCTCAGAAAGAGCCAATA
77050437 TAATGGAAAGCTCAGAAAGAGCC-ATA
1 TAATGG-AAGCTCAGAAAGAGCCAATA
*
77050463 TAATAGGATGCTCA
1 TAAT-GGAAGCTCA
77050477 TAAGAGCTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
26 14 0.40
27 21 0.60
ACGTcount: A:0.42, C:0.15, G:0.22, T:0.21
Consensus pattern (26 bp):
TAATGGAAGCTCAGAAAGAGCCAATA
Found at i:77055614 original size:79 final size:78
Alignment explanation
Indices: 77055512--77055734 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
77055502 GCTCCTCGTT
* *
77055512 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
77055577 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
77055592 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
77055656 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
77055670 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
77055733 GA
63 GA
77055735 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:77055629 original size:39 final size:40
Alignment explanation
Indices: 77055512--77055734 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
77055502 GCTCCTCGTT
* *
77055512 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
77055552 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
77055592 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
77055631 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
77055670 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
77055711 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77055735 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:77063542 original size:40 final size:40
Alignment explanation
Indices: 77063498--77063761 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
77063488 GCTCCTCGTT
* *
77063498 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
77063538 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
77063578 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
77063618 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
77063658 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
77063697 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
77063738 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77063762 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:77077370 original size:40 final size:39
Alignment explanation
Indices: 77077288--77077378 Score: 103
Period size: 40 Copynumber: 2.3 Consensus size: 39
77077278 TATGTTCAGT
*
77077288 ACTAAGTGTGCGATTTGAAATAGCTTCGGCTATAAATAGC
1 ACTAAGTGTGCGAATTGAAATAGCTTCGGCTAT-AATAGC
* * *
77077328 ACTAAGTGTGCGAATTGGATTAGCTTCTGCTAT-ATGAGGC
1 ACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAAT-A-GC
*
77077368 ACTAGGTGTGC
1 ACTAAGTGTGC
77077379 AATATTGAGA
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
38 2 0.05
39 1 0.02
40 41 0.93
ACGTcount: A:0.27, C:0.15, G:0.26, T:0.31
Consensus pattern (39 bp):
ACTAAGTGTGCGAATTGAAATAGCTTCGGCTATAATAGC
Found at i:77080798 original size:37 final size:37
Alignment explanation
Indices: 77080757--77080850 Score: 102
Period size: 37 Copynumber: 2.6 Consensus size: 37
77080747 TTAGTGCTGA
* * *
77080757 GGCGTGTTATGGGTTGGATTATCTCTTATGAGCATTT
1 GGCGTGTTATCGGTTGGATTAGCTCTAATGAGCATTT
**
77080794 GGCGTGTTATCGGTTGG-TCTAGCTCTAATGAGTGTTT
1 GGCGTGTTATCGGTTGGAT-TAGCTCTAATGAGCATTT
* *
77080831 GGTGTGTT-TTGGTTGGATTA
1 GGCGTGTTATCGGTTGGATTA
77080851 CTTGTGTACT
Statistics
Matches: 48, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
36 10 0.21
37 38 0.79
ACGTcount: A:0.14, C:0.10, G:0.33, T:0.44
Consensus pattern (37 bp):
GGCGTGTTATCGGTTGGATTAGCTCTAATGAGCATTT
Found at i:77081643 original size:85 final size:85
Alignment explanation
Indices: 77081481--77081645 Score: 271
Period size: 85 Copynumber: 1.9 Consensus size: 85
77081471 AGTTGCATTC
77081481 TAGTAGCTAGAAAGATCAAATAGCTATGAAATTCAAAATAAGAGGTCTTTATATGGTAATTAGAC
1 TAGTAGCTAGAAAGATCAAATAGCTATGAAATTCAAAATAAGAGGTCTTTATATGGTAATTAGAC
*
77081546 CATTATGTAAAAGTTGAATA
66 CATTAAGTAAAAGTTGAATA
* *
77081566 TAGTAGCTA-AAGAGATCAAATAGTTATGGAATTCAAAATAAGAGGTCTTTATATGGTAATTAGA
1 TAGTAGCTAGAA-AGATCAAATAGCTATGAAATTCAAAATAAGAGGTCTTTATATGGTAATTAGA
77081630 CCATTAAAG-AAAAGTT
65 CCATT-AAGTAAAAGTT
77081646 AGTAGATATT
Statistics
Matches: 75, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
84 2 0.03
85 71 0.95
86 2 0.03
ACGTcount: A:0.44, C:0.08, G:0.18, T:0.30
Consensus pattern (85 bp):
TAGTAGCTAGAAAGATCAAATAGCTATGAAATTCAAAATAAGAGGTCTTTATATGGTAATTAGAC
CATTAAGTAAAAGTTGAATA
Found at i:77088616 original size:42 final size:39
Alignment explanation
Indices: 77088539--77088617 Score: 104
Period size: 42 Copynumber: 1.9 Consensus size: 39
77088529 ATTTGGAGGC
* *
77088539 ATTACTTATACGGTGAGACTATTATTTTCACAGATCAAA
1 ATTACTTATACAGTGAGACAATTATTTTCACAGATCAAA
*
77088578 ATTACTTATACAGTGGAAAGACAATTATTTTCATAGATCA
1 ATTACTTATACAGT-G--AGACAATTATTTTCACAGATCA
77088618 TAAAAGCTTC
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
39 13 0.38
40 1 0.03
42 20 0.59
ACGTcount: A:0.38, C:0.14, G:0.13, T:0.35
Consensus pattern (39 bp):
ATTACTTATACAGTGAGACAATTATTTTCACAGATCAAA
Found at i:77094590 original size:20 final size:22
Alignment explanation
Indices: 77094553--77094592 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
77094543 TATAAGATTA
77094553 TATATATATATCGTGTTTGGCT
1 TATATATATATCGTGTTTGGCT
*
77094575 TATATGTATAT-G-GTTTGG
1 TATATATATATCGTGTTTGG
77094593 TTAAATTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 6 0.35
21 1 0.06
22 10 0.59
ACGTcount: A:0.23, C:0.05, G:0.23, T:0.50
Consensus pattern (22 bp):
TATATATATATCGTGTTTGGCT
Done.