Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 226 of 297
Found at i:77111371 original size:10 final size:10
Alignment explanation
Indices: 77111356--77111380 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
77111346 TCCATCTAAT
77111356 ACATACCAAA
1 ACATACCAAA
77111366 ACATACCAAA
1 ACATACCAAA
77111376 ACATA
1 ACATA
77111381 ATATCAAGTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.60, C:0.28, G:0.00, T:0.12
Consensus pattern (10 bp):
ACATACCAAA
Found at i:77113189 original size:39 final size:39
Alignment explanation
Indices: 77113145--77113251 Score: 126
Period size: 40 Copynumber: 2.7 Consensus size: 39
77113135 CCTTCGAAAT
* *
77113145 TTAGCCGAATATAGCT-ACTTGCTCAAATGCCTTCGGGAC
1 TTAGCCGAATATAG-TAACTCGCACAAATGCCTTCGGGAC
**
77113184 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAG-CCGAATATAGTAACTCGCACAAATGCCTTCGGGAC
**
77113224 TTAGCCCGGTTATAGTAACTCGCACAAA
1 TTAG-CCGAATATAGTAACTCGCACAAA
77113252 NNNNNNNNNN
Statistics
Matches: 62, Mismatches: 4, Indels: 3
0.90 0.06 0.04
Matches are distributed among these distances:
39 5 0.08
40 57 0.92
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (39 bp):
TTAGCCGAATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:77113212 original size:40 final size:40
Alignment explanation
Indices: 77113168--77113251 Score: 168
Period size: 40 Copynumber: 2.1 Consensus size: 40
77113158 GCTACTTGCT
77113168 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
77113208 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
77113248 CAAA
1 CAAA
77113252 NNNNNNNNNN
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 44 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77115664 original size:31 final size:31
Alignment explanation
Indices: 77115626--77115688 Score: 117
Period size: 31 Copynumber: 2.0 Consensus size: 31
77115616 GTAAATAAGA
*
77115626 ACTGTGCTAATCAATTGTGGGACATCGGAAG
1 ACTGTGCTAATCAATTGTAGGACATCGGAAG
77115657 ACTGTGCTAATCAATTGTAGGACATCGGAAG
1 ACTGTGCTAATCAATTGTAGGACATCGGAAG
77115688 A
1 A
77115689 GATCTCAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 31 1.00
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (31 bp):
ACTGTGCTAATCAATTGTAGGACATCGGAAG
Found at i:77121560 original size:63 final size:63
Alignment explanation
Indices: 77121461--77122031 Score: 1142
Period size: 63 Copynumber: 9.1 Consensus size: 63
77121451 TAAAATACAA
77121461 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121524 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121587 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121650 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121713 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121776 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121839 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121902 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77121965 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
1 CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
77122028 CTCA
1 CTCA
77122032 CACTATTTAA
Statistics
Matches: 508, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 508 1.00
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (63 bp):
CTCATATGATCGTTTCGTTTCTTCCATATGAAGGTAGATTCATCAAGGATCGATGAATCTACC
Found at i:77124020 original size:24 final size:24
Alignment explanation
Indices: 77123993--77124050 Score: 80
Period size: 24 Copynumber: 2.4 Consensus size: 24
77123983 ATAAACTCTG
*
77123993 ACGAGCTGAAAACAGTAAGCTCCT
1 ACGAGCTGAAAACAGTAAGCTCAT
* *
77124017 ACGAGCTGAGAATAGTAAGCTCAT
1 ACGAGCTGAAAACAGTAAGCTCAT
*
77124041 ACGAGTTGAA
1 ACGAGCTGAA
77124051 GTGAGTCCGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.38, C:0.19, G:0.24, T:0.19
Consensus pattern (24 bp):
ACGAGCTGAAAACAGTAAGCTCAT
Found at i:77127457 original size:39 final size:41
Alignment explanation
Indices: 77127362--77127545 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
77127352 TTGAATGATG
*
77127362 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
77127401 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
77127441 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
77127480 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
77127520 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77127546 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 8, Indels: 19
0.82 0.05 0.12
Matches are distributed among these distances:
39 55 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:77127567 original size:79 final size:79
Alignment explanation
Indices: 77127414--77127578 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
77127404 GGACTAAGAT
* **
77127414 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
*
77127479 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
77127493 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGA-G
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGA-GATA
* *
77127555 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
77127572 CCGAAGG
1 CCGAAGG
77127579 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 45 0.61
80 24 0.32
81 2 0.03
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGATACTAA
ATCCGGGTTAAATC
Found at i:77128319 original size:19 final size:19
Alignment explanation
Indices: 77128295--77128335 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
77128285 AGATTTGGAA
77128295 AATCACTAAAAATAGCAGG
1 AATCACTAAAAATAGCAGG
77128314 AATCACTAAAAATAGCAGG
1 AATCACTAAAAATAGCAGG
77128333 AAT
1 AAT
77128336 GGAATTAAAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.54, C:0.15, G:0.15, T:0.17
Consensus pattern (19 bp):
AATCACTAAAAATAGCAGG
Found at i:77137041 original size:43 final size:43
Alignment explanation
Indices: 77136994--77137104 Score: 125
Period size: 43 Copynumber: 2.6 Consensus size: 43
77136984 GCCACTGTCT
* * *
77136994 CAGACAGGGTCTTACACGAAATCA-ATTAAAGATGTCAATATCC
1 CAGACATGGTCTTACACGAAATCACAATAAA-ATGCCAATATCC
* * *
77137037 CAGACATGGTCTTACACGTAATCACAATACAATGCCAATGTCC
1 CAGACATGGTCTTACACGAAATCACAATAAAATGCCAATATCC
* * *
77137080 TAGACATGGTCTTACATGTAATCAC
1 CAGACATGGTCTTACACGAAATCAC
77137105 GTCTCGATAA
Statistics
Matches: 59, Mismatches: 8, Indels: 2
0.86 0.12 0.03
Matches are distributed among these distances:
43 55 0.93
44 4 0.07
ACGTcount: A:0.36, C:0.23, G:0.15, T:0.25
Consensus pattern (43 bp):
CAGACATGGTCTTACACGAAATCACAATAAAATGCCAATATCC
Found at i:77147483 original size:41 final size:41
Alignment explanation
Indices: 77147437--77147514 Score: 147
Period size: 41 Copynumber: 1.9 Consensus size: 41
77147427 GAGTAAGCTA
*
77147437 TATAGCTTAGTAAGCTCGTATGCAAGAAATAAGCAACATGG
1 TATAGCTTAGTAAGCTCATATGCAAGAAATAAGCAACATGG
77147478 TATAGCTTAGTAAGCTCATATGCAAGAAATAAGCAAC
1 TATAGCTTAGTAAGCTCATATGCAAGAAATAAGCAAC
77147515 CTTACCATGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.41, C:0.15, G:0.19, T:0.24
Consensus pattern (41 bp):
TATAGCTTAGTAAGCTCATATGCAAGAAATAAGCAACATGG
Found at i:77149357 original size:12 final size:12
Alignment explanation
Indices: 77149340--77149365 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77149330 ATATCATGCA
77149340 TACTTACCATTT
1 TACTTACCATTT
77149352 TACTTACCATTT
1 TACTTACCATTT
77149364 TA
1 TA
77149366 ACCCCCCACT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.27, C:0.23, G:0.00, T:0.50
Consensus pattern (12 bp):
TACTTACCATTT
Found at i:77150677 original size:15 final size:15
Alignment explanation
Indices: 77150654--77150687 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
77150644 AAGGATCTCT
*
77150654 TTCTATTCTCGCTCG
1 TTCTATTCTCGCTCC
*
77150669 TTCTCTTCTCGCTCC
1 TTCTATTCTCGCTCC
77150684 TTCT
1 TTCT
77150688 TGCATTAGAC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.03, C:0.38, G:0.09, T:0.50
Consensus pattern (15 bp):
TTCTATTCTCGCTCC
Found at i:77165347 original size:12 final size:12
Alignment explanation
Indices: 77165330--77165357 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
77165320 CAGCATAAAT
77165330 AATTGGAAATTA
1 AATTGGAAATTA
77165342 AATTGGAAATTA
1 AATTGGAAATTA
77165354 AATT
1 AATT
77165358 CAAATTTTGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.50, C:0.00, G:0.14, T:0.36
Consensus pattern (12 bp):
AATTGGAAATTA
Found at i:77167121 original size:12 final size:12
Alignment explanation
Indices: 77167104--77167129 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
77167094 CAAGGCAAGT
77167104 AATTTGGTTCCA
1 AATTTGGTTCCA
77167116 AATTTGGTTCCA
1 AATTTGGTTCCA
77167128 AA
1 AA
77167130 GTCGCAACAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.31, C:0.15, G:0.15, T:0.38
Consensus pattern (12 bp):
AATTTGGTTCCA
Found at i:77168030 original size:151 final size:151
Alignment explanation
Indices: 77167756--77168051 Score: 520
Period size: 151 Copynumber: 2.0 Consensus size: 151
77167746 AAATTTATTA
*
77167756 GATTAAGGGCAATTAAAATAGGTAGTAACTAAATTCGTAGGGAGATTGATTAATTAAAGTGGATG
1 GATTAAGGGCAATTAAAATAGGTAGTAACTAAATCCGTAGGGAGATTGATTAATTAAAGTGGATG
* **
77167821 TGATTAGTTTAAAGTTAGGGTTTAAAATTGATTAATTGGATTAAATCGAACGTGCTTAAACCCTA
66 TGATTAGTCTAAAGTTAAAGTTTAAAATTGATTAATTGGATTAAATCGAACGTGCTTAAACCCTA
*
77167886 GAATTGATGACTTTAGGATCG
131 GAATTGATAACTTTAGGATCG
* * *
77167907 GATTAAGGGCAATTAAAATGGGTAGTAACTAAATCCGTAGGGAGATTGATTAATTGAAGTGGGTG
1 GATTAAGGGCAATTAAAATAGGTAGTAACTAAATCCGTAGGGAGATTGATTAATTAAAGTGGATG
77167972 TGATTAGTCTAAAGTTAAAGTTTAAAATTGATTAATTGGATTAAATCGAACGTGCTTAAACCCTA
66 TGATTAGTCTAAAGTTAAAGTTTAAAATTGATTAATTGGATTAAATCGAACGTGCTTAAACCCTA
77168037 GAATTGATAACTTTA
131 GAATTGATAACTTTA
77168052 TGAAGTAATT
Statistics
Matches: 137, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
151 137 1.00
ACGTcount: A:0.37, C:0.08, G:0.23, T:0.33
Consensus pattern (151 bp):
GATTAAGGGCAATTAAAATAGGTAGTAACTAAATCCGTAGGGAGATTGATTAATTAAAGTGGATG
TGATTAGTCTAAAGTTAAAGTTTAAAATTGATTAATTGGATTAAATCGAACGTGCTTAAACCCTA
GAATTGATAACTTTAGGATCG
Found at i:77169044 original size:62 final size:57
Alignment explanation
Indices: 77168948--77169071 Score: 151
Period size: 62 Copynumber: 2.1 Consensus size: 57
77168938 AATATTAAGT
* * *
77168948 TAATATAATATTTATTAAGATGAATATTAGATTAAATTTAATATTAAATCTTACTAAAA
1 TAATAAAATATTTATTAAGATGAATATTAAATTAAAATTAATATTAAA-C-TACTAAAA
*
77169007 TAATAAAATATTTATCTACAAGAT-AAGTATTAAATTAAAATTAATATTAAACTATTAAAA
1 TAATAAAATATTTAT-T--AAGATGAA-TATTAAATTAAAATTAATATTAAACTACTAAAA
77169067 TAATA
1 TAATA
77169072 TTATTTTTGG
Statistics
Matches: 57, Mismatches: 4, Indels: 7
0.84 0.06 0.10
Matches are distributed among these distances:
59 14 0.25
60 13 0.23
61 3 0.05
62 27 0.47
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (57 bp):
TAATAAAATATTTATTAAGATGAATATTAAATTAAAATTAATATTAAACTACTAAAA
Found at i:77169517 original size:19 final size:19
Alignment explanation
Indices: 77169484--77169523 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
77169474 AAAATATCAT
*
77169484 ATTAATTTTAATTTATTTG
1 ATTAATTTTAATTTACTTG
77169503 ATTAA-TTTAATTTTACTTG
1 ATTAATTTTAA-TTTACTTG
77169522 AT
1 AT
77169524 CAAAATTAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 5 0.26
19 14 0.74
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (19 bp):
ATTAATTTTAATTTACTTG
Found at i:77171650 original size:14 final size:14
Alignment explanation
Indices: 77171604--77171651 Score: 50
Period size: 14 Copynumber: 3.6 Consensus size: 14
77171594 TTTTTAAATT
77171604 ATTAATT-AATT-A
1 ATTAATTGAATTAA
77171616 ATTAATTGAAGTTCAA
1 ATTAATTGAA-TT-AA
77171632 A--AATTGAATTAA
1 ATTAATTGAATTAA
77171644 ATTAATTG
1 ATTAATTG
77171652 GTCATAGTGA
Statistics
Matches: 30, Mismatches: 0, Indels: 10
0.75 0.00 0.25
Matches are distributed among these distances:
12 10 0.33
13 4 0.13
14 14 0.47
16 2 0.07
ACGTcount: A:0.48, C:0.02, G:0.08, T:0.42
Consensus pattern (14 bp):
ATTAATTGAATTAA
Found at i:77174834 original size:46 final size:45
Alignment explanation
Indices: 77174781--77174955 Score: 174
Period size: 46 Copynumber: 3.8 Consensus size: 45
77174771 TGGTTGAGCA
*
77174781 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG-ATGCAAACG
* * * * *
77174827 TCCGAACTTGTTGAGTTGAGTCCGAGTTCGC-GA-GATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAA--A--CG
* * *
77174874 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTAT-GATGCAAACG
* * *
77174920 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATG
77174956 GGCGGGTTAC
Statistics
Matches: 104, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
43 5 0.05
44 1 0.01
45 3 0.03
46 60 0.58
47 28 0.27
48 2 0.02
50 5 0.05
ACGTcount: A:0.22, C:0.22, G:0.27, T:0.29
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGATGCAAACG
Found at i:77174937 original size:93 final size:93
Alignment explanation
Indices: 77174778--77174950 Score: 274
Period size: 93 Copynumber: 1.9 Consensus size: 93
77174768 GGATGGTTGA
* * * * *
77174778 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGAATGCAAATGTCCGAACTTGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCAAACGCCCGAACTCGTTGAGT
77174843 TGAGTCCGAGTTCGCGAGATGTAACTAG
66 TGAGTCCGAGTTCGCGAGATGTAACTAG
* * *
77174871 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCAAACGCCCGAACTCGTTGAGT
77174936 TGAGTCCGAGTTCGC
66 TGAGTCCGAGTTCGC
77174951 TTATGGGCGG
Statistics
Matches: 72, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTCATGAATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGCGAGATGTAACTAG
Found at i:77178161 original size:48 final size:48
Alignment explanation
Indices: 77178081--77178406 Score: 374
Period size: 48 Copynumber: 6.8 Consensus size: 48
77178071 CACCATATTA
* *
77178081 ATGTGTGCCAGTGTAAAACCATGTTTGAGACATGGCATCGACGATGAT
1 ATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACGATGAT
*
77178129 ATGTGTGCCAGTGTAAAACCATATCTGGGACATGGCATC-AGCGATGAT
1 ATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGA-CGATGAT
* * * *
77178177 ATGTGTGCCTGTGTAAAACCATGTCTGGGATATGGCATCGGCAATGAT
1 ATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACGATGAT
* * * *
77178225 ATATGTGCCTA-TGTAAGACCATGTCTGGAACATGGCATCGATGATGAT
1 ATGTGTGCC-AGTGTAAAACCATGTCTGGGACATGGCATCGACGATGAT
* * * * *
77178273 ATATGTGCCTGTGTAAGACTATGTCTGGGACATGGCATCGACAATGAT
1 ATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACGATGAT
* * * *
77178321 ATGTGTGCCTGTGTAAGACCATGTCTGGAACATGGCATCAACGATGAT
1 ATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACGATGAT
* *
77178369 ATGTG-GATTCA-TGTAAGACCATGTC-GGAGACATGGCAT
1 ATGTGTG--CCAGTGTAAAACCATGTCTGG-GACATGGCAT
77178407 TGGCACTTTA
Statistics
Matches: 242, Mismatches: 29, Indels: 14
0.85 0.10 0.05
Matches are distributed among these distances:
47 4 0.02
48 237 0.98
49 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (48 bp):
ATGTGTGCCAGTGTAAAACCATGTCTGGGACATGGCATCGACGATGAT
Found at i:77178344 original size:144 final size:145
Alignment explanation
Indices: 77178084--77178406 Score: 415
Period size: 144 Copynumber: 2.2 Consensus size: 145
77178074 CATATTAATG
* * *
77178084 TGTGCC-AGTGTAAAACCATGT-TTGAGACATGGCATCGACGATGATATGTGTGCCAGTGTAAAA
1 TGTGCCTA-TGTAAGACCATGTCTGGAGACATGGCATCGACGATGATATATGTGCCAGTGTAAAA
* * *
77178147 CCATATCTGGGACATGGCATCAGCGATGATATGTGTGCCTGTGTAAAACCATGTCTGGGATATGG
65 CCATATCTGGGACATGGCATCAGCAATGATATGTGTGCCTGTGTAAAACCATGTCTGGAACATGG
**
77178212 CATCGGCAATGATATA
130 CATCAACAATGATATA
* * *
77178228 TGTGCCTATGTAAGACCATGTCTGGA-ACATGGCATCGATGATGATATATGTGCCTGTGTAAGAC
1 TGTGCCTATGTAAGACCATGTCTGGAGACATGGCATCGACGATGATATATGTGCCAGTGTAAAAC
* * *
77178292 TATGTCTGGGACATGGCATC-GACAATGATATGTGTGCCTGTGTAAGACCATGTCTGGAACATGG
66 CATATCTGGGACATGGCATCAG-CAATGATATGTGTGCCTGTGTAAAACCATGTCTGGAACATGG
* *
77178356 CATCAACGATGATATG
130 CATCAACAATGATATA
**
77178372 TG-GATTCATGTAAGACCATGTC-GGAGACATGGCAT
1 TGTGCCT-ATGTAAGACCATGTCTGGAGACATGGCAT
77178407 TGGCACTTTA
Statistics
Matches: 156, Mismatches: 18, Indels: 10
0.85 0.10 0.05
Matches are distributed among these distances:
143 6 0.04
144 146 0.94
145 4 0.03
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (145 bp):
TGTGCCTATGTAAGACCATGTCTGGAGACATGGCATCGACGATGATATATGTGCCAGTGTAAAAC
CATATCTGGGACATGGCATCAGCAATGATATGTGTGCCTGTGTAAAACCATGTCTGGAACATGGC
ATCAACAATGATATA
Found at i:77178384 original size:96 final size:96
Alignment explanation
Indices: 77178081--77178406 Score: 422
Period size: 96 Copynumber: 3.4 Consensus size: 96
77178071 CACCATATTA
* * * * * * *
77178081 ATGTGTGCCAGTGTAAAACCATGTTTGAGACATGGCATCGACGATGATATGTGTGCCAGTGTAAA
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGTGTGCCTGTGTAAG
* * *
77178146 ACCATATCTGGGACATGGCATCAGCGATGAT
66 ACCATGTCTGGAACATGGCATCAACGATGAT
* * * * *
77178177 ATGTGTGCCTGTGTAAAACCATGTCTGGGATATGGCATCGGCAATGATATATGTGCCTATGTAAG
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGTGTGCCTGTGTAAG
* *
77178242 ACCATGTCTGGAACATGGCATCGATGATGAT
66 ACCATGTCTGGAACATGGCATCAACGATGAT
* *
77178273 ATATGTGCCTGTGTAAGACTATGTCTGGGACATGGCATCGACAATGATATGTGTGCCTGTGTAAG
1 ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGTGTGCCTGTGTAAG
77178338 ACCATGTCTGGAACATGGCATCAACGATGAT
66 ACCATGTCTGGAACATGGCATCAACGATGAT
** *
77178369 ATGTG-GATTCATGTAAGACCATGTC-GGAGACATGGCAT
1 ATGTGTGCCT-GTGTAAGACCATGTCTGG-GACATGGCAT
77178407 TGGCACTTTA
Statistics
Matches: 199, Mismatches: 29, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
95 4 0.02
96 195 0.98
ACGTcount: A:0.28, C:0.17, G:0.27, T:0.28
Consensus pattern (96 bp):
ATGTGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACAATGATATGTGTGCCTGTGTAAG
ACCATGTCTGGAACATGGCATCAACGATGAT
Found at i:77194054 original size:47 final size:47
Alignment explanation
Indices: 77194000--77194117 Score: 164
Period size: 47 Copynumber: 2.5 Consensus size: 47
77193990 TATTTGAATA
* * *
77194000 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* * *
77194047 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* *
77194094 GATGTGAAAGTGTATAAATGTGAT
1 AATGTGAAAGTGTATATATGTGAT
77194118 GAGTCCCGAA
Statistics
Matches: 62, Mismatches: 9, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 62 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
Found at i:77199197 original size:18 final size:18
Alignment explanation
Indices: 77199174--77199214 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
77199164 CTAAAATATT
77199174 AATTAATTAATTAAATTA
1 AATTAATTAATTAAATTA
** *
77199192 AATTAATTTCTTTAATTA
1 AATTAATTAATTAAATTA
77199210 AATTA
1 AATTA
77199215 TTTTTTCAAC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.49, C:0.02, G:0.00, T:0.49
Consensus pattern (18 bp):
AATTAATTAATTAAATTA
Found at i:77204158 original size:50 final size:51
Alignment explanation
Indices: 77204036--77204173 Score: 145
Period size: 50 Copynumber: 2.7 Consensus size: 51
77204026 TCTTTTACAC
* * * * * *
77204036 ATAGTGGCATGCACTTAGTACCACACATGTGATCGAAGCTATCGGGTACGC
1 ATAGTAGCATGCACTTAGTACTACACATGTGAACTAAGCCATCGGGTACGA
* * * * *
77204087 ATAGTAGCCTGGACTTAGTACTACACATGTGACCTAA-CCATCTGGTA-TA
1 ATAGTAGCATGCACTTAGTACTACACATGTGAACTAAGCCATCGGGTACGA
*
77204136 AGTAGTAGCATGCACTTAGTACTACACACGTGAACTAA
1 A-TAGTAGCATGCACTTAGTACTACACATGTGAACTAA
77204174 AACCATTTTA
Statistics
Matches: 72, Mismatches: 14, Indels: 3
0.81 0.16 0.03
Matches are distributed among these distances:
49 1 0.01
50 40 0.56
51 31 0.43
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.25
Consensus pattern (51 bp):
ATAGTAGCATGCACTTAGTACTACACATGTGAACTAAGCCATCGGGTACGA
Found at i:77206640 original size:42 final size:42
Alignment explanation
Indices: 77206547--77206679 Score: 142
Period size: 42 Copynumber: 3.1 Consensus size: 42
77206537 CTTATATGGG
* * * * *
77206547 ATCACATATCGATGCCGATAGCCC-AGCTATGGTATTACACGAT
1 ATCACATATCGATGCC-ATATCCCAAAC-ATGGTCTTACACAAA
* * *
77206590 GTCTCATATCGATGCCATGTCCCAAACATGGTCTTACACAAA
1 ATCACATATCGATGCCATATCCCAAACATGGTCTTACACAAA
* * *
77206632 ATCACATATCGATGCCATATCCCAGATATGGTCTTACACGAA
1 ATCACATATCGATGCCATATCCCAAACATGGTCTTACACAAA
77206674 ATCACA
1 ATCACA
77206680 CATAACCCTA
Statistics
Matches: 75, Mismatches: 14, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
42 59 0.79
43 16 0.21
ACGTcount: A:0.32, C:0.27, G:0.15, T:0.26
Consensus pattern (42 bp):
ATCACATATCGATGCCATATCCCAAACATGGTCTTACACAAA
Found at i:77231708 original size:13 final size:13
Alignment explanation
Indices: 77231690--77231715 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
77231680 AAGTTGATAC
77231690 ATCATTAATAAGT
1 ATCATTAATAAGT
77231703 ATCATTAATAAGT
1 ATCATTAATAAGT
77231716 TTAAAGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.08, G:0.08, T:0.38
Consensus pattern (13 bp):
ATCATTAATAAGT
Found at i:77234470 original size:71 final size:70
Alignment explanation
Indices: 77234368--77234501 Score: 169
Period size: 71 Copynumber: 1.9 Consensus size: 70
77234358 ATGTGTCCTA
* * * * *
77234368 CGCTAGTCGGTAGAACTGACAAATAAGTGTGCCTAGCAATAGTCGGCATAGCCGACAATAAATGT
1 CGCTAGTCGATAGAACTGAAAAATAACTGTGCCTAG-AATAGTCGGCATAACCGAAAATAAATGT
77234433 ACCTTG
65 ACCTTG
* * * * *
77234439 CGCTGGTCGATAGAGCTGAAAAATAACTGTGCCTAGACTGGTCGGTATAACCGAAAATAAATG
1 CGCTAGTCGATAGAACTGAAAAATAACTGTGCCTAGAATAGTCGGCATAACCGAAAATAAATG
77234502 CGTCCTACGC
Statistics
Matches: 53, Mismatches: 10, Indels: 1
0.83 0.16 0.02
Matches are distributed among these distances:
70 22 0.42
71 31 0.58
ACGTcount: A:0.34, C:0.19, G:0.25, T:0.22
Consensus pattern (70 bp):
CGCTAGTCGATAGAACTGAAAAATAACTGTGCCTAGAATAGTCGGCATAACCGAAAATAAATGTA
CCTTG
Found at i:77234554 original size:141 final size:144
Alignment explanation
Indices: 77234309--77234667 Score: 386
Period size: 141 Copynumber: 2.5 Consensus size: 144
77234299 TGGCCTATAA
* * * * ** * *
77234309 AACC-AAAAAATGAGTATGCCTAGCACTAGTCGGTATAATCAAAAAACAAATGTGTCCTACGCTA
1 AACCAAAAAAATAAATATGCCTAGAACTGGTCGGTATAA-CCGAAAATAAATGTGTCCTACGCTG
* * * * *
77234373 GTCGGTAGAA-CTGACAAATAAGTGTGCCTAGCAATAGTCGGCATAGCCGACAATAAATGTACCT
65 GTCGGTAGAATCTAAAAAATAAGTATGCCCAGCAATAGTCGGCATAACCGACAATAAATGTACCT
* *
77234437 TGCGCTGGTCGATAG
130 TGCGCTAGTAGATAG
* ** * * *
77234452 -AGCTGAAAAATAACTGTGCCTAG-ACTGGTCGGTATAACCGAAAATAAATGCGTCCTACGCTGG
1 AACCAAAAAAATAAATATGCCTAGAACTGGTCGGTATAACCGAAAATAAATGTGTCCTACGCTGG
* * * * * * *
77234515 TTGGTAGAATC-AAAAAATAAGTATGCCCATCACTGGTCGGTATAATCGACAATAAATGTGCCTT
66 TCGGTAGAATCTAAAAAATAAGTATGCCCAGCAATAGTCGGCATAACCGACAATAAATGTACCTT
77234579 GCGCTAGTAGATAG
131 GCGCTAGTAGATAG
* * **
77234593 AACCAAAAAAATAAATATGCCTAGAACTGGTCGGTATAATCGACAATAAATGTGTCCTGTGCTGG
1 AACCAAAAAAATAAATATGCCTAGAACTGGTCGGTATAACCGAAAATAAATGTGTCCTACGCTGG
77234658 TCGGTAGAAT
66 TCGGTAGAAT
77234668 AGACAAATAA
Statistics
Matches: 176, Mismatches: 36, Indels: 8
0.80 0.16 0.04
Matches are distributed among these distances:
141 83 0.47
142 34 0.19
143 59 0.34
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (144 bp):
AACCAAAAAAATAAATATGCCTAGAACTGGTCGGTATAACCGAAAATAAATGTGTCCTACGCTGG
TCGGTAGAATCTAAAAAATAAGTATGCCCAGCAATAGTCGGCATAACCGACAATAAATGTACCTT
GCGCTAGTAGATAG
Found at i:77234666 original size:72 final size:71
Alignment explanation
Indices: 77234309--77234666 Score: 310
Period size: 72 Copynumber: 5.0 Consensus size: 71
77234299 TGGCCTATAA
* * * * * * * *
77234309 AACCAAAAAATGAGTATGCCTAGCACTAGTCGGTATAATCAAAAAACAAATGTGTCCTACGCTAG
1 AACCAAAAAATAAGTATGCCTAGAACTGGTCGGTATAATC-GACAATAAATGTGTCCTGCGCTGG
77234374 TCGGTAG
65 TCGGTAG
** * * * * ** *
77234381 AACTGACAAATAAGTGTGCCTAGCAA-TAGTCGGCATAGCCGACAATAAATGT-ACCTTGCGCTG
1 AACCAAAAAATAAGTATGCCTAG-AACTGGTCGGTATAATCGACAATAAATGTGTCC-TGCGCTG
*
77234444 GTCGATAG
64 GTCGGTAG
* ** * * * * * *
77234452 AGCTGAAAAATAACTGTGCCTAG-ACTGGTCGGTATAACCGAAAATAAATGCGTCCTACGCTGGT
1 AACCAAAAAATAAGTATGCCTAGAACTGGTCGGTATAATCGACAATAAATGTGTCCTGCGCTGGT
*
77234516 TGGTAG
66 CGGTAG
* * ** *
77234522 AATCAAAAAATAAGTATGCCCATCACTGGTCGGTATAATCGACAATAAATGTG-CCTTGCGCTAG
1 AACCAAAAAATAAGTATGCCTAGAACTGGTCGGTATAATCGACAATAAATGTGTCC-TGCGCTGG
* *
77234586 TAGATAG
65 TCGGTAG
* *
77234593 AACCAAAAAAATAAATATGCCTAGAACTGGTCGGTATAATCGACAATAAATGTGTCCTGTGCTGG
1 AACC-AAAAAATAAGTATGCCTAGAACTGGTCGGTATAATCGACAATAAATGTGTCCTGCGCTGG
77234658 TCGGTAG
65 TCGGTAG
77234665 AA
1 AA
77234667 TAGACAAATA
Statistics
Matches: 226, Mismatches: 52, Indels: 16
0.77 0.18 0.05
Matches are distributed among these distances:
69 1 0.00
70 52 0.23
71 83 0.37
72 87 0.38
73 3 0.01
ACGTcount: A:0.35, C:0.19, G:0.22, T:0.24
Consensus pattern (71 bp):
AACCAAAAAATAAGTATGCCTAGAACTGGTCGGTATAATCGACAATAAATGTGTCCTGCGCTGGT
CGGTAG
Found at i:77241941 original size:210 final size:210
Alignment explanation
Indices: 77241579--77241994 Score: 805
Period size: 210 Copynumber: 2.0 Consensus size: 210
77241569 ACTAAACCGA
77241579 GTCGTAAAAATAATTAACCGTCATAATTGATGCTCATTATATGAACATGTGCATGTGTGAAAATT
1 GTCGTAAAAATAATTAACCGTCATAATTGATGCTCATTATATGAACATGTGCATGTGTGAAAATT
77241644 TCGTGTTTGAATTTTGTTAATTGTAAGTGAATTTCATCAAATAGGACTTATGTGAGAAAATTTTA
66 TCGTGTTTGAATTTTGTTAATTGTAAGTGAATTTCATCAAATAGGACTTATGTGAGAAAATTTTA
*
77241709 AAATGTGATAGGTCAATGCGTAAGGACCTATTAGTGCATGTGGAAAAAGGGGGGACTTGCATGTC
131 AAATGTGATAGGTCAATGCGTAAGGACCTATTAGAGCATGTGGAAAAAGGGGGGACTTGCATGTC
77241774 AAATTCCCCCCTAAT
196 AAATTCCCCCCTAAT
*
77241789 GTCGTAAAAATAATTAACCGTCATAATTGATGCTCATTATATGTACATGTGCATGTGTGAAAATT
1 GTCGTAAAAATAATTAACCGTCATAATTGATGCTCATTATATGAACATGTGCATGTGTGAAAATT
*
77241854 TCGTGTTTGAATTTTGTTAATTGTAAGTGAATTTCATCGAATAGGACTTATGTGAGAAAATTTTA
66 TCGTGTTTGAATTTTGTTAATTGTAAGTGAATTTCATCAAATAGGACTTATGTGAGAAAATTTTA
77241919 AAATGTGATAGGTCAATGCGTAAGGACCTATTAGAGCATGTGGAAAAAGGGGGGACTTGCATGTC
131 AAATGTGATAGGTCAATGCGTAAGGACCTATTAGAGCATGTGGAAAAAGGGGGGACTTGCATGTC
77241984 AAATTCCCCCC
196 AAATTCCCCCC
77241995 CTACTAGTAG
Statistics
Matches: 203, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
210 203 1.00
ACGTcount: A:0.33, C:0.12, G:0.21, T:0.33
Consensus pattern (210 bp):
GTCGTAAAAATAATTAACCGTCATAATTGATGCTCATTATATGAACATGTGCATGTGTGAAAATT
TCGTGTTTGAATTTTGTTAATTGTAAGTGAATTTCATCAAATAGGACTTATGTGAGAAAATTTTA
AAATGTGATAGGTCAATGCGTAAGGACCTATTAGAGCATGTGGAAAAAGGGGGGACTTGCATGTC
AAATTCCCCCCTAAT
Found at i:77243462 original size:40 final size:40
Alignment explanation
Indices: 77243378--77243602 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
77243368 TTGAATGATG
* * *
77243378 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* *
77243417 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
77243458 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AAT
* *
77243498 T-CGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
77243537 TCCAGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
77243576 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
77243603 AACGAGGAGC
Statistics
Matches: 160, Mismatches: 17, Indels: 16
0.83 0.09 0.08
Matches are distributed among these distances:
39 34 0.21
40 116 0.73
41 10 0.06
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:77245005 original size:16 final size:16
Alignment explanation
Indices: 77244984--77245014 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77244974 TTCATCACGA
77244984 CATAGATACATTTATG
1 CATAGATACATTTATG
*
77245000 CATAGATTCATTTAT
1 CATAGATACATTTAT
77245015 ATTAAAACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.10, T:0.42
Consensus pattern (16 bp):
CATAGATACATTTATG
Found at i:77250322 original size:30 final size:30
Alignment explanation
Indices: 77250287--77250355 Score: 102
Period size: 30 Copynumber: 2.3 Consensus size: 30
77250277 ACCTAAAAGG
* *
77250287 ACACACGGGCGCGTCGCATGCCTGTGTGTC
1 ACACACGGCCGCGTCGCATGCCTGTATGTC
**
77250317 ACACACGGCCGTTTCGCATGCCTGTATGTC
1 ACACACGGCCGCGTCGCATGCCTGTATGTC
77250347 ACACACGGC
1 ACACACGGC
77250356 TGAGACACAC
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 35 1.00
ACGTcount: A:0.17, C:0.35, G:0.28, T:0.20
Consensus pattern (30 bp):
ACACACGGCCGCGTCGCATGCCTGTATGTC
Found at i:77251379 original size:21 final size:21
Alignment explanation
Indices: 77251200--77251389 Score: 202
Period size: 21 Copynumber: 9.0 Consensus size: 21
77251190 CAAACACGCC
* * *
77251200 AACAGAAGCTCATAAAAGCTT
1 AACAGAAGCTCGTAAGAGCTG
* * * *
77251221 AATAGAAGCTCGAAAGAACCG
1 AACAGAAGCTCGTAAGAGCTG
* *
77251242 AATAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
* * *
77251263 AACAGAAGCTTGTGAGAGCTA
1 AACAGAAGCTCGTAAGAGCTG
* *
77251284 AACAGAAGCTCATAAGAGTTG
1 AACAGAAGCTCGTAAGAGCTG
* *
77251305 AACAGAGGCTCGTGAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
*
77251326 AACAGAAGCTCATAAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
*
77251347 AACAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCGTAAGAGCTG
77251368 AACAGAAGCTCGTGAA-AGCTG
1 AACAGAAGCTCGT-AAGAGCTG
77251389 A
1 A
77251390 TCCACCCAAA
Statistics
Matches: 137, Mismatches: 31, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
21 136 0.99
22 1 0.01
ACGTcount: A:0.41, C:0.17, G:0.26, T:0.16
Consensus pattern (21 bp):
AACAGAAGCTCGTAAGAGCTG
Found at i:77251389 original size:42 final size:42
Alignment explanation
Indices: 77251200--77251378 Score: 250
Period size: 42 Copynumber: 4.3 Consensus size: 42
77251190 CAAACACGCC
* * * ** * *
77251200 AACAGAAGCTCATAAAAGCTTAATAGAAGCTCGAAAGAACCG
1 AACAGAAGCTCATAAGAGCTGAACAGAAGCTCGTGAGAGCTG
* * *
77251242 AATAGAAGCTCATAAGAGCTGAACAGAAGCTTGTGAGAGCTA
1 AACAGAAGCTCATAAGAGCTGAACAGAAGCTCGTGAGAGCTG
* *
77251284 AACAGAAGCTCATAAGAGTTGAACAGAGGCTCGTGAGAGCTG
1 AACAGAAGCTCATAAGAGCTGAACAGAAGCTCGTGAGAGCTG
77251326 AACAGAAGCTCATAAGAGCTGAACAGAAGCTCGTGAGAGCTG
1 AACAGAAGCTCATAAGAGCTGAACAGAAGCTCGTGAGAGCTG
77251368 AACAGAAGCTC
1 AACAGAAGCTC
77251379 GTGAAAGCTG
Statistics
Matches: 120, Mismatches: 17, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 120 1.00
ACGTcount: A:0.41, C:0.18, G:0.26, T:0.16
Consensus pattern (42 bp):
AACAGAAGCTCATAAGAGCTGAACAGAAGCTCGTGAGAGCTG
Found at i:77263860 original size:40 final size:40
Alignment explanation
Indices: 77263779--77263999 Score: 322
Period size: 40 Copynumber: 5.6 Consensus size: 40
77263769 AAACCAAGTA
** * *
77263779 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
77263818 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
77263858 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
* * *
77263898 CCTTTGGGACTTGGCCCGGTTATAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
77263938 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
77263978 CCTTCGGG-CTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
77264000 CAATCCGAAT
Statistics
Matches: 166, Mismatches: 14, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
39 26 0.16
40 140 0.84
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:77273802 original size:50 final size:52
Alignment explanation
Indices: 77273692--77273812 Score: 174
Period size: 50 Copynumber: 2.4 Consensus size: 52
77273682 ATGAACAAAT
* * * *
77273692 GAGTTACTTAATGCATGACTTAATTTAATTATGCAAACTTTAACTAACATGG
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
* *
77273744 GAGTTACATAATGCATGTCATAATTT-ATGATGCAAAC-TTAACTTACATGA
1 GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
77273794 GAGTTACATAATGCATGAC
1 GAGTTACATAATGCATGAC
77273813 TTTATTAAAT
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
50 29 0.47
51 10 0.16
52 23 0.37
ACGTcount: A:0.37, C:0.14, G:0.15, T:0.34
Consensus pattern (52 bp):
GAGTTACATAATGCATGACATAATTTAATGATGCAAACTTTAACTAACATGA
Found at i:77273916 original size:39 final size:39
Alignment explanation
Indices: 77273836--77273916 Score: 126
Period size: 39 Copynumber: 2.1 Consensus size: 39
77273826 GAACACATAT
* * * *
77273836 TAATGATGTTCAAACTATGACATAATTAAATACTCACAC
1 TAATGATGCTCAAACTATGACATAATTAAAGACACAAAC
77273875 TAATGATGCTCAAACTATGACATAATTAAAGACACAAAC
1 TAATGATGCTCAAACTATGACATAATTAAAGACACAAAC
77273914 TAA
1 TAA
77273917 AATAACTAAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.47, C:0.17, G:0.09, T:0.27
Consensus pattern (39 bp):
TAATGATGCTCAAACTATGACATAATTAAAGACACAAAC
Found at i:77276227 original size:21 final size:21
Alignment explanation
Indices: 77276203--77276244 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77276193 TCATCAGATC
*
77276203 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
77276224 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
77276245 AGGTGGGAGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:77281756 original size:25 final size:25
Alignment explanation
Indices: 77281722--77281771 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
77281712 GAAATTGGGA
77281722 AAATTTCTATTTAAGACCTTCTCAT
1 AAATTTCTATTTAAGACCTTCTCAT
77281747 AAATTTCTATTTAAGACCTTCTCAT
1 AAATTTCTATTTAAGACCTTCTCAT
77281772 TTATAATTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.20, G:0.04, T:0.44
Consensus pattern (25 bp):
AAATTTCTATTTAAGACCTTCTCAT
Found at i:77286261 original size:11 final size:11
Alignment explanation
Indices: 77286242--77286271 Score: 51
Period size: 11 Copynumber: 2.7 Consensus size: 11
77286232 AAAGTAAATA
*
77286242 TATAGTTCATT
1 TATACTTCATT
77286253 TATACTTCATT
1 TATACTTCATT
77286264 TATACTTC
1 TATACTTC
77286272 TTGTGCCTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.03, T:0.53
Consensus pattern (11 bp):
TATACTTCATT
Found at i:77290007 original size:21 final size:21
Alignment explanation
Indices: 77289964--77290035 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 21
77289954 TCGAAAGAGC
* *
77289964 TAAACGGAAACCCAT-TAGGGT
1 TAAACGGAAACTCATGT-GAGT
77289985 TAAACGGAAACTCATGTGAGT
1 TAAACGGAAACTCATGTGAGT
* * * *
77290006 T-AACTGAAGCTCATGAGAGC
1 TAAACGGAAACTCATGTGAGT
77290026 TAAACGGAAA
1 TAAACGGAAA
77290036 GAAAACTTGA
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
20 16 0.39
21 24 0.59
22 1 0.02
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.19
Consensus pattern (21 bp):
TAAACGGAAACTCATGTGAGT
Found at i:77291157 original size:21 final size:21
Alignment explanation
Indices: 77291133--77291174 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
77291123 CTTTTTAATT
*
77291133 AATTGACTATCGAAACGTTAA
1 AATTGACTAACGAAACGTTAA
* *
77291154 AATTTACTAACGAAACTTTAA
1 AATTGACTAACGAAACGTTAA
77291175 TACTAACTCA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.45, C:0.14, G:0.10, T:0.31
Consensus pattern (21 bp):
AATTGACTAACGAAACGTTAA
Found at i:77295230 original size:11 final size:11
Alignment explanation
Indices: 77295216--77295240 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
77295206 CTTGTAAGAT
77295216 TCTTTATTTTG
1 TCTTTATTTTG
77295227 TCTTTATTTTG
1 TCTTTATTTTG
77295238 TCT
1 TCT
77295241 ATCTCGTTGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.08, C:0.12, G:0.08, T:0.72
Consensus pattern (11 bp):
TCTTTATTTTG
Found at i:77300298 original size:21 final size:19
Alignment explanation
Indices: 77300250--77300298 Score: 53
Period size: 19 Copynumber: 2.5 Consensus size: 19
77300240 GAGTACATCG
*
77300250 TAAACAGAAGCCCAAAGGC
1 TAAACAGAAGCACAAAGGC
**
77300269 TGCACAGAAGCACATAAGTGC
1 TAAACAGAAGCACA-AAG-GC
77300290 TAAACAGAA
1 TAAACAGAA
77300299 ACCCGTAAGG
Statistics
Matches: 23, Mismatches: 5, Indels: 2
0.77 0.17 0.07
Matches are distributed among these distances:
19 11 0.48
20 3 0.13
21 9 0.39
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.10
Consensus pattern (19 bp):
TAAACAGAAGCACAAAGGC
Found at i:77301905 original size:23 final size:23
Alignment explanation
Indices: 77301872--77301917 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
77301862 CAATTCATAG
77301872 ATTAAGCATAAATCATTATCAAT
1 ATTAAGCATAAATCATTATCAAT
*
77301895 ATTAAGTATAAATCATTATCAAT
1 ATTAAGCATAAATCATTATCAAT
77301918 GCCATGAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (23 bp):
ATTAAGCATAAATCATTATCAAT
Found at i:77302018 original size:36 final size:36
Alignment explanation
Indices: 77301978--77302180 Score: 94
Period size: 39 Copynumber: 5.1 Consensus size: 36
77301968 TTATCAATAT
77301978 TAAGCATAAATCATTATCAATGCCATGAGCTTAGTA
1 TAAGCATAAATCATTATCAATGCCATGAGCTTAGTA
* * *
77302014 TAAGCCTATTTAAA-CATCATCAA-GCTCAAATGTCA-TTATCAATA
1 TAAG-C-A--TAAATCATTATCAATGC-C--ATG--AGCT-T-AGTA
77302058 TTAAGCATAAATCATTATCAATGCCATGAGCTTAGTA
1 -TAAGCATAAATCATTATCAATGCCATGAGCTTAGTA
* * *
77302095 TAAGCCTATTTAAA-CATCATCAA-GCTCAAATGTCA-TTATCAATA
1 TAAG-C-A--TAAATCATTATCAATGC-C--ATG--AGCT-T-AGTA
77302139 TTAAGCATAAATCATTATCAATGCCATGAGCTTAGTA
1 -TAAGCATAAATCATTATCAATGCCATGAGCTTAGTA
77302176 TAAGC
1 TAAGC
77302181 CTATTTAAAC
Statistics
Matches: 125, Mismatches: 12, Indels: 60
0.63 0.06 0.30
Matches are distributed among these distances:
36 13 0.10
37 8 0.06
38 10 0.08
39 20 0.16
40 14 0.11
41 14 0.11
42 20 0.16
43 10 0.08
44 8 0.06
45 8 0.06
ACGTcount: A:0.39, C:0.18, G:0.11, T:0.32
Consensus pattern (36 bp):
TAAGCATAAATCATTATCAATGCCATGAGCTTAGTA
Found at i:77302019 original size:81 final size:81
Alignment explanation
Indices: 77301884--77302204 Score: 633
Period size: 81 Copynumber: 4.0 Consensus size: 81
77301874 TAAGCATAAA
*
77301884 TCATTATCAATATTAAGTATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
1 TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
77301949 TCATCAAGCTCAAATG
66 TCATCAAGCTCAAATG
77301965 TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
1 TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
77302030 TCATCAAGCTCAAATG
66 TCATCAAGCTCAAATG
77302046 TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
1 TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
77302111 TCATCAAGCTCAAATG
66 TCATCAAGCTCAAATG
77302127 TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
1 TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
77302192 TCATCAAGCTCAA
66 TCATCAAGCTCAA
77302205 TTGTTAGTAG
Statistics
Matches: 239, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
81 239 1.00
ACGTcount: A:0.40, C:0.18, G:0.10, T:0.32
Consensus pattern (81 bp):
TCATTATCAATATTAAGCATAAATCATTATCAATGCCATGAGCTTAGTATAAGCCTATTTAAACA
TCATCAAGCTCAAATG
Found at i:77306412 original size:30 final size:30
Alignment explanation
Indices: 77306341--77306418 Score: 93
Period size: 31 Copynumber: 2.6 Consensus size: 30
77306331 TTTTGAAAAT
* * *
77306341 TTATTATTTTAGTCACTCTTGTTAGATAAG
1 TTATAATTTTAGTCACTCTTATTAAATAAG
* *
77306371 CTGTCAATTTTAGTCACTCTTATTAAATAAG
1 TTAT-AATTTTAGTCACTCTTATTAAATAAG
*
77306402 TTATAATTTTATTCACT
1 TTATAATTTTAGTCACT
77306419 ATATGGTTAA
Statistics
Matches: 39, Mismatches: 8, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
30 14 0.36
31 25 0.64
ACGTcount: A:0.29, C:0.13, G:0.09, T:0.49
Consensus pattern (30 bp):
TTATAATTTTAGTCACTCTTATTAAATAAG
Found at i:77307252 original size:16 final size:16
Alignment explanation
Indices: 77307211--77307245 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
77307201 AATGATCAAT
*
77307211 TAAAGTCAAACTTATA
1 TAAAGTCAAACATATA
77307227 TAAAGTCAAACATATA
1 TAAAGTCAAACATATA
77307243 TAA
1 TAA
77307246 GCTCAAAATG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.54, C:0.11, G:0.06, T:0.29
Consensus pattern (16 bp):
TAAAGTCAAACATATA
Found at i:77307453 original size:21 final size:21
Alignment explanation
Indices: 77307425--77307464 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
77307415 CTTTATGAAT
77307425 TTTAATTTT-TTAAATTTTGA
1 TTTAATTTTCTTAAATTTTGA
*
77307445 TTTATATTTTCTTAATTTTT
1 TTTA-ATTTTCTTAAATTTT
77307465 AGAATCGTGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 4 0.24
21 5 0.29
22 8 0.47
ACGTcount: A:0.25, C:0.03, G:0.03, T:0.70
Consensus pattern (21 bp):
TTTAATTTTCTTAAATTTTGA
Found at i:77307671 original size:30 final size:33
Alignment explanation
Indices: 77307627--77307687 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
77307617 GAACTCATTT
*
77307627 TAACGGTAGAGTGGCT-AAATTGTCAACTTACG
1 TAACGGTAGAGTGGCTAAAATTGACAACTTACG
77307659 TAACGG-A-AGTGGCTAAAATTGACAACTTA
1 TAACGGTAGAGTGGCTAAAATTGACAACTTA
77307688 TCTAATAGGA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
30 7 0.26
31 14 0.52
32 6 0.22
ACGTcount: A:0.36, C:0.15, G:0.23, T:0.26
Consensus pattern (33 bp):
TAACGGTAGAGTGGCTAAAATTGACAACTTACG
Found at i:77308145 original size:31 final size:31
Alignment explanation
Indices: 77308074--77308152 Score: 83
Period size: 31 Copynumber: 2.6 Consensus size: 31
77308064 TTTAAAGGTA
* *
77308074 AAGTGACTAAAATTGACTACTCATCTAATGG
1 AAGTGACTAAAATTAACAACTCATCTAATGG
* *
77308105 AAGTAACTAAAATTAACAACTTATCTAACAT-G
1 AAGTGACTAAAATTAACAACTCATCT-A-ATGG
77308137 -AGTGACTAAAA-TAACA
1 AAGTGACTAAAATTAACA
77308153 TTTTTTTTAA
Statistics
Matches: 41, Mismatches: 5, Indels: 5
0.80 0.10 0.10
Matches are distributed among these distances:
30 5 0.12
31 32 0.78
32 2 0.05
33 2 0.05
ACGTcount: A:0.47, C:0.15, G:0.11, T:0.27
Consensus pattern (31 bp):
AAGTGACTAAAATTAACAACTCATCTAATGG
Found at i:77308244 original size:440 final size:435
Alignment explanation
Indices: 77307431--77308245 Score: 894
Period size: 440 Copynumber: 1.8 Consensus size: 435
77307421 GAATTTTAAT
* * *
77307431 TTTTTAAATTTTGATTTATATTTTCTTAATTTTTAGAATCGTGACTAAATTGGTATAATGTGTAA
1 TTTTTAAATTTTAATTTATATTTTCTTAATTTTTAGAACCGTGACTAAATTGATATAATGTGTAA
* * *
77307496 ATGTTAAAAGTTAAATTTATTTATTTTTTTCAAAATCAGGATTAAACTAATAAAATGGGTCAACA
66 ATATTAAAAGTTAAATTTAGTTATTTTTTTCAAAATCAGGATTAAACTAATAAAATAGGTCAACA
* * * * * *
77307561 TTGAAGGCTAATTTTGTTATTATACCATGCCATATCAACATTCTATTAGGTGATCAGAACTCATT
131 TTGAAGGCTAATTTTGTTATCATACCAGGCCACACCAACATTCCATTAGATGATCAGAACTCATT
* * * * * ** *
77307626 TTAACGGTAGAGTGGCTAAATTGTCAACTTACGTAACGGAAGTGGCTAAAATTGACAACTTATCT
196 TTAAAGGTAAAGTGACTAAATTGACAACTCACGTAACGGAAGTAACTAAAATTAACAACTTATCT
* ** * * *
77307691 AATAGGAGTGACTGGAATAACAAATTTGTAAATGGGTGACCAAAATAGGAACATAGGTAAACTCA
261 AACAGGAGTGACTAAAATAACAAATTTGTAAATAGGTGACCAAAATAGAAACATAAGTAAACTCA
* * *
77307756 GGTGACTAAATAAGTAGTTAACCATAAATTTTAACAATTTTTAAATATATATTTTAAAATTTTTT
326 GGTGACTAAATAAGTAATTAACC----A--CTAAC-ATTTTAAAATATATATTTTAAAATTTTTT
77307821 TGAGTATCTTATCTATTTTTATAAATTTTAATAATGTGTGAATTTTTATGTA
384 TGAGTATCTTATCTATTTTTATAAATTTTAATAATGTGTGAATTTTTATGTA
*
77307873 TTTTT-AATTTTAATTTATACTTTT-TTAATTTTTAGAACCGTGACTAAATTGATATATTGTGTA
1 TTTTTAAATTTTAATTTATA-TTTTCTTAATTTTTAGAACCGTGACTAAATTGATATAATGTGTA
** * * * **
77307936 AATATTAAGGGTTAAATTT-GTTGTTTTTTTCAAAATTAGGATTAAATTTTTAAAATAGGT-AAT
65 AATATTAAAAGTTAAATTTAGTTATTTTTTTCAAAATCAGGATTAAACTAATAAAATAGGTCAA-
* * * * *
77307999 TATTGAGGGCTAATTCTT-TTATCATACCAGGCCACACCAATATTCCATTTGATTATCA-AA-TC
129 CATTGAAGGCTAATT-TTGTTATCATACCAGGCCACACCAACATTCCATTAGATGATCAGAACTC
* *
77308061 TATTTTAAAGGTAAAGTGACTAAAATTGACTACTCATC-TAATGGAAGTAACTAAAATTAACAAC
193 -ATTTTAAAGGTAAAGTGACT-AAATTGACAACTCA-CGTAACGGAAGTAACTAAAATTAACAAC
* ** *
77308125 TTATCTAACATGAGTGACTAAAATAACATTTTTTTTAAATAGGTGACCAAAATACCAAAATAGAA
255 TTATCTAACAGGAGTGACTAAAATAACA-AATTTGTAAATAGGTG--------ACCAAAATAGAA
* ** *
77308190 ACGTAAGTAAACTTGGGTGACTAAATAAGTAATTTACC-CTAAC-TTTTAAAATATAT
311 ACATAAGTAAACTCAGGTGACTAAATAAGTAATTAACCACTAACATTTTAAAATATAT
77308246 TCATATAAGA
Statistics
Matches: 306, Mismatches: 52, Indels: 32
0.78 0.13 0.08
Matches are distributed among these distances:
438 2 0.01
439 21 0.07
440 147 0.48
441 80 0.26
442 13 0.04
449 43 0.14
ACGTcount: A:0.38, C:0.10, G:0.13, T:0.39
Consensus pattern (435 bp):
TTTTTAAATTTTAATTTATATTTTCTTAATTTTTAGAACCGTGACTAAATTGATATAATGTGTAA
ATATTAAAAGTTAAATTTAGTTATTTTTTTCAAAATCAGGATTAAACTAATAAAATAGGTCAACA
TTGAAGGCTAATTTTGTTATCATACCAGGCCACACCAACATTCCATTAGATGATCAGAACTCATT
TTAAAGGTAAAGTGACTAAATTGACAACTCACGTAACGGAAGTAACTAAAATTAACAACTTATCT
AACAGGAGTGACTAAAATAACAAATTTGTAAATAGGTGACCAAAATAGAAACATAAGTAAACTCA
GGTGACTAAATAAGTAATTAACCACTAACATTTTAAAATATATATTTTAAAATTTTTTTGAGTAT
CTTATCTATTTTTATAAATTTTAATAATGTGTGAATTTTTATGTA
Found at i:77315826 original size:6 final size:7
Alignment explanation
Indices: 77315802--77315832 Score: 53
Period size: 7 Copynumber: 4.4 Consensus size: 7
77315792 TTGCTCTAAT
77315802 TTTTTCC
1 TTTTTCC
77315809 TTTTTCC
1 TTTTTCC
*
77315816 TTTTTCT
1 TTTTTCC
77315823 TTTTTCC
1 TTTTTCC
77315830 TTT
1 TTT
77315833 AAATCAATAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
7 22 1.00
ACGTcount: A:0.00, C:0.23, G:0.00, T:0.77
Consensus pattern (7 bp):
TTTTTCC
Found at i:77319673 original size:22 final size:21
Alignment explanation
Indices: 77319643--77319686 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 21
77319633 TTTTGCCCCC
77319643 ACTTAAGCAATCACATATGATT
1 ACTTAAGCAATCACATAT-ATT
*
77319665 ACTTGAGCAATCACATATATT
1 ACTTAAGCAATCACATATATT
77319686 A
1 A
77319687 AACTTTTTTT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
21 4 0.19
22 17 0.81
ACGTcount: A:0.41, C:0.18, G:0.09, T:0.32
Consensus pattern (21 bp):
ACTTAAGCAATCACATATATT
Found at i:77324744 original size:21 final size:21
Alignment explanation
Indices: 77324683--77324744 Score: 56
Period size: 21 Copynumber: 3.0 Consensus size: 21
77324673 TGGGTTCGGG
*
77324683 ACTATTCCGGGTGGGCCTGGA
1 ACTATTCCGGGTGGGCTTGGA
* * *
77324704 AATATAAT-C-GGCGGGTTTGGA
1 ACTAT--TCCGGGTGGGCTTGGA
77324725 ACTATTCCGGGTGGGCTTGG
1 ACTATTCCGGGTGGGCTTGG
77324745 TGGTGGGCCA
Statistics
Matches: 30, Mismatches: 7, Indels: 8
0.67 0.16 0.18
Matches are distributed among these distances:
19 1 0.03
20 1 0.03
21 26 0.87
22 1 0.03
23 1 0.03
ACGTcount: A:0.18, C:0.18, G:0.37, T:0.27
Consensus pattern (21 bp):
ACTATTCCGGGTGGGCTTGGA
Found at i:77326176 original size:21 final size:21
Alignment explanation
Indices: 77326150--77326194 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
77326140 TATAAATATG
77326150 AAGAATAATATAAAGAGATTA
1 AAGAATAATATAAAGAGATTA
77326171 AAGAATAATATAAAGAGATTA
1 AAGAATAATATAAAGAGATTA
77326192 AAG
1 AAG
77326195 GAAATTGTTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.62, C:0.00, G:0.16, T:0.22
Consensus pattern (21 bp):
AAGAATAATATAAAGAGATTA
Found at i:77331544 original size:13 final size:13
Alignment explanation
Indices: 77331526--77331550 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77331516 TTTTTGTAAA
77331526 AGTTGTAAAAATG
1 AGTTGTAAAAATG
77331539 AGTTGTAAAAAT
1 AGTTGTAAAAAT
77331551 CTGAATTGAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.48, C:0.00, G:0.20, T:0.32
Consensus pattern (13 bp):
AGTTGTAAAAATG
Found at i:77332091 original size:48 final size:48
Alignment explanation
Indices: 77332024--77332115 Score: 139
Period size: 48 Copynumber: 1.9 Consensus size: 48
77332014 TAGGGATATG
* * * *
77332024 TGTGATCCTATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
1 TGTGATCCCATGTAAGACCATATCTGGAACATGGCATTGACATCGATA
*
77332072 TGTGATCCCATGTAAGACCATATCTGGAATATGGCATTGACATC
1 TGTGATCCCATGTAAGACCATATCTGGAACATGGCATTGACATC
77332116 CTACTATGTG
Statistics
Matches: 39, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 39 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATCTGGAACATGGCATTGACATCGATA
Found at i:77335753 original size:39 final size:39
Alignment explanation
Indices: 77335686--77335864 Score: 259
Period size: 39 Copynumber: 4.5 Consensus size: 39
77335676 ACAAAGCATG
* *
77335686 CGGGACTTTAAGCCCGAATATAATACCAGCACGAATGCCTT
1 CGGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTT
* * *
77335727 CGGGGCTTAGCCCAGATATAACACCAGCACAAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* *
77335766 CGGGGCTTAGCCCGGATATAACACTAGCACGAATGCCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
77335805 CGGGACTTAGCCCGGATATAACACCAGCACGAATGTCTT
1 CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
*
77335844 CGGGACTTAACCCGGATATAA
1 CGGGACTTAGCCCGGATATAA
77335865 TTCTCCATTA
Statistics
Matches: 126, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
39 119 0.94
40 2 0.02
41 5 0.04
ACGTcount: A:0.30, C:0.28, G:0.22, T:0.20
Consensus pattern (39 bp):
CGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:77340107 original size:217 final size:217
Alignment explanation
Indices: 77339732--77340164 Score: 857
Period size: 217 Copynumber: 2.0 Consensus size: 217
77339722 GAACATTGGC
77339732 TAATATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGCCTAATATATATATGGG
1 TAATATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGCCTAATATATATATGGG
77339797 CTAAGTACCTTGAATTTCTCTTTGATGTTCGAAATGATTAAATCAATTTATTTGTTAAATTAAGC
66 CTAAGTACCTTGAATTTCTCTTTGATGTTCGAAATGATTAAATCAATTTATTTGTTAAATTAAGC
77339862 TCAAGAGCAAAGGGGAACTAAATCTGATAAAAGAAAGGAAAAAGTAATTGAATAGCCGTTGAGGT
131 TCAAGAGCAAAGGGGAACTAAATCTGATAAAAGAAAGGAAAAAGTAATTGAATAGCCGTTGAGGT
77339927 CGTTCGAAAACATCCGAGGTAA
196 CGTTCGAAAACATCCGAGGTAA
77339949 TAATATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGCCTAATATATATATGGG
1 TAATATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGCCTAATATATATATGGG
77340014 CTAAGTACCTTGAATTTCTCTTTGATGTTCGAAATGATTAAATCAATTTATTTGTTAAATTAAGC
66 CTAAGTACCTTGAATTTCTCTTTGATGTTCGAAATGATTAAATCAATTTATTTGTTAAATTAAGC
77340079 TCAAGAGCAAAGGGGAACTAAATCTGATAAAAGAAAGGAAAAAGTAATTGAATAGCCGTTGAGGT
131 TCAAGAGCAAAGGGGAACTAAATCTGATAAAAGAAAGGAAAAAGTAATTGAATAGCCGTTGAGGT
*
77340144 CGTTCGACAACATCCGAGGTA
196 CGTTCGAAAACATCCGAGGTA
77340165 TGTCTTCGAG
Statistics
Matches: 215, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
217 215 1.00
ACGTcount: A:0.37, C:0.12, G:0.18, T:0.33
Consensus pattern (217 bp):
TAATATGTTGAATTTGATTCATGATTTCATATATATATGACTCTAATGCCTAATATATATATGGG
CTAAGTACCTTGAATTTCTCTTTGATGTTCGAAATGATTAAATCAATTTATTTGTTAAATTAAGC
TCAAGAGCAAAGGGGAACTAAATCTGATAAAAGAAAGGAAAAAGTAATTGAATAGCCGTTGAGGT
CGTTCGAAAACATCCGAGGTAA
Found at i:77340525 original size:40 final size:40
Alignment explanation
Indices: 77340470--77340651 Score: 242
Period size: 40 Copynumber: 4.6 Consensus size: 40
77340460 TATTCGAATG
* *
77340470 ATATCCGGGCTAAGTCTCGAAGGTATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77340510 ATATCTGGGCTAAGTCCTGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77340550 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
77340590 ATATCCGGGCAAAGACCCAAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
77340630 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77340652 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 17, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
39 12 0.10
40 110 0.89
41 2 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:77341959 original size:36 final size:36
Alignment explanation
Indices: 77341919--77341988 Score: 131
Period size: 36 Copynumber: 1.9 Consensus size: 36
77341909 ATGTGTTTGT
77341919 TTATAGTAATGGATCCCGATCCCAACCGAGCGGTTG
1 TTATAGTAATGGATCCCGATCCCAACCGAGCGGTTG
*
77341955 TTATAGTAATGGATCCTGATCCCAACCGAGCGGT
1 TTATAGTAATGGATCCCGATCCCAACCGAGCGGT
77341989 AGCTGATGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 33 1.00
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.26
Consensus pattern (36 bp):
TTATAGTAATGGATCCCGATCCCAACCGAGCGGTTG
Found at i:77347113 original size:70 final size:70
Alignment explanation
Indices: 77347000--77347140 Score: 264
Period size: 70 Copynumber: 2.0 Consensus size: 70
77346990 GAACAATAAA
*
77347000 ATATGAGGGGAGTGGGAGGAGAAACCAAAGTTGTTTCATCCTTGCTCCCCCATTTTGCCGTAAGT
1 ATATGAGGGGAGTGGGAGGAGAAACCAAAGTTGTTTCATCCTTGCTCCCCCATTTTGCCGTAACT
77347065 AGAAG
66 AGAAG
*
77347070 ATATGAGGGGAGTGGGAGGAGAAACTAAAGTTGTTTCATCCTTGCTCCCCCATTTTGCCGTAACT
1 ATATGAGGGGAGTGGGAGGAGAAACCAAAGTTGTTTCATCCTTGCTCCCCCATTTTGCCGTAACT
77347135 AGAAG
66 AGAAG
77347140 A
1 A
77347141 AAAAAAAAAG
Statistics
Matches: 69, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
70 69 1.00
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (70 bp):
ATATGAGGGGAGTGGGAGGAGAAACCAAAGTTGTTTCATCCTTGCTCCCCCATTTTGCCGTAACT
AGAAG
Found at i:77348512 original size:40 final size:40
Alignment explanation
Indices: 77348457--77348678 Score: 288
Period size: 40 Copynumber: 5.6 Consensus size: 40
77348447 TATTCGAATG
* *
77348457 ATATCTGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
77348497 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
77348537 ATATCCGGGCCAAGTCCCGAAGGCATTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * * *
77348577 ATATTCGGGATAAGACCCGAAGGCATTTGTGCGAGTTG-CC
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* * *
77348617 ATATTCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
77348657 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
77348679 TACTTGGGTT
Statistics
Matches: 165, Mismatches: 16, Indels: 3
0.90 0.09 0.02
Matches are distributed among these distances:
39 14 0.08
40 149 0.90
41 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:77350246 original size:18 final size:18
Alignment explanation
Indices: 77350219--77350262 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
77350209 TTCTCTTTTC
* **
77350219 CTTTTCCTTTTTTGATTT
1 CTTTTTCTTTTTCAATTT
77350237 CTTTTTCTTTTTCAATTT
1 CTTTTTCTTTTTCAATTT
*
77350255 ATTTTTCT
1 CTTTTTCT
77350263 CTCATTTCTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.16, G:0.02, T:0.73
Consensus pattern (18 bp):
CTTTTTCTTTTTCAATTT
Found at i:77361028 original size:79 final size:81
Alignment explanation
Indices: 77360926--77361110 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
77360916 GCTCCTCGTT
* *
77360926 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
77360988 CGGATTTAG-TAAC-TCGCA
63 CGGATAT-GTTAACTTAGCA
**
77361006 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
77361070 ATATGTTCACTTAGCA
66 ATATGTTAACTTAGCA
77361086 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77361111 CATCATTCAA
Statistics
Matches: 92, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
78 6 0.07
79 52 0.57
80 34 0.37
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATGTTAACTTAGCA
Found at i:77361110 original size:40 final size:40
Alignment explanation
Indices: 77360926--77361110 Score: 204
Period size: 40 Copynumber: 4.7 Consensus size: 40
77360916 GCTCCTCGTT
* * *
77360926 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* *
77360966 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
77361006 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* *
77361045 CAAATGCCTTC-GGATCTTAGTCCGGATAT-GTTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAG-T-ACTTCGCA
77361086 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77361111 CATCATTCAA
Statistics
Matches: 124, Mismatches: 10, Indels: 22
0.79 0.06 0.14
Matches are distributed among these distances:
38 3 0.02
39 31 0.25
40 75 0.60
41 14 0.11
42 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:77367271 original size:79 final size:82
Alignment explanation
Indices: 77367160--77367344 Score: 231
Period size: 79 Copynumber: 2.3 Consensus size: 82
77367150 GCTCCTCGTT
* *
77367160 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCAGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
* *
77367222 CGGATTTAGTAAC-TCGCA
64 CGGATATAGTAACTTAGCA
**
77367240 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGATCTTAACCCG
* *
77367303 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
77367320 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77367345 CATCATTCAA
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 5 0.05
79 53 0.58
80 34 0.37
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTATCTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:77367344 original size:40 final size:40
Alignment explanation
Indices: 77367160--77367344 Score: 202
Period size: 40 Copynumber: 4.7 Consensus size: 40
77367150 GCTCCTCGTT
* * *
77367160 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
* * *
77367200 CAAATGCCTTCAGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ACTTCGCA
77367240 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTA-TCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTACT-TCGCA
* * *
77367279 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-ACTTCGCA
77367320 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
77367345 CATCATTCAA
Statistics
Matches: 122, Mismatches: 13, Indels: 20
0.79 0.08 0.13
Matches are distributed among these distances:
38 3 0.02
39 30 0.25
40 74 0.61
41 14 0.11
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTACTTCGCA
Found at i:77376223 original size:26 final size:25
Alignment explanation
Indices: 77376169--77376240 Score: 78
Period size: 26 Copynumber: 2.9 Consensus size: 25
77376159 TCCCATCCCT
77376169 ATTTTACCCTA-TCAAAATTTTGACA
1 ATTTTACCCTAGT-AAAATTTTGACA
**
77376194 ATTTTACCTCTAGTAAAATTTTGATG
1 ATTTTACC-CTAGTAAAATTTTGACA
*
77376220 ATTTTGCCC--GTAAAATTTTGA
1 ATTTTACCCTAGTAAAATTTTGA
77376241 GAAAATATGT
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
23 12 0.29
25 9 0.21
26 20 0.48
27 1 0.02
ACGTcount: A:0.32, C:0.15, G:0.10, T:0.43
Consensus pattern (25 bp):
ATTTTACCCTAGTAAAATTTTGACA
Found at i:77377674 original size:48 final size:48
Alignment explanation
Indices: 77377600--77377745 Score: 204
Period size: 48 Copynumber: 3.0 Consensus size: 48
77377590 TAAGGTTATG
*
77377600 TGTGATCCCATGTAAGACCATGTTTGGGACATGGCATTGGAATCGATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGAATCGATA
* *
77377648 TGTGATCCCATGTAAGATCATATTTGGGACATGGCATTGGCAT-GAATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGAATCG-ATA
* * * * *
77377696 TTTGATCCCATGTAAGACCATATCTGAGATATGGCATTGGTATCGATA
1 TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGAATCGATA
77377744 TG
1 TG
77377746 AGACATCGTG
Statistics
Matches: 86, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
47 1 0.01
48 84 0.98
49 1 0.01
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (48 bp):
TGTGATCCCATGTAAGACCATATTTGGGACATGGCATTGGAATCGATA
Found at i:77381070 original size:51 final size:49
Alignment explanation
Indices: 77381015--77381150 Score: 157
Period size: 49 Copynumber: 2.7 Consensus size: 49
77381005 TATCTGATAT
* **
77381015 GCATAGTAGCATGCACTTAGTACTACACACGTGATCGAAGTTATTGGGTAC
1 GCATAGTAGCATGCACTTAGTACTACACACGTGA-CCAA-TTATCCGGTAC
* * *
77381066 GCATAGTAG-ACTGCACTTAGTACTACGCATGCGACCAATTATCCGGTAC
1 GCATAGTAGCA-TGCACTTAGTACTACACACGTGACCAATTATCCGGTAC
* * *
77381115 ACGTAGTAGCCTGCACTTAGTACTACACACGTGACC
1 GCATAGTAGCATGCACTTAGTACTACACACGTGACC
77381151 TCACAATAGA
Statistics
Matches: 71, Mismatches: 12, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
49 38 0.54
50 4 0.06
51 29 0.41
ACGTcount: A:0.29, C:0.25, G:0.21, T:0.25
Consensus pattern (49 bp):
GCATAGTAGCATGCACTTAGTACTACACACGTGACCAATTATCCGGTAC
Found at i:77387520 original size:43 final size:42
Alignment explanation
Indices: 77387365--77387521 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
77387355 TGTGTTATCG
* * * **
77387365 TGTAAGACCACATCTGGGATGTTGGCATCGACT-TATGATTTATG
1 TGTAAGACCACGTCTGGGACGTTGGCATC-A-TATTTGA-TTACA
* * *
77387409 TGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
* *
77387451 TGTAAGACC-CTCTCTAGGACAG-TGGCATCTATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATC-ATATTTGATTACA
*
77387494 TGTAAGACCACGTTTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
77387522 TGTATGAGCT
Statistics
Matches: 93, Mismatches: 14, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
41 1 0.01
42 26 0.28
43 37 0.40
44 29 0.31
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCATATTTGATTACA
Found at i:77388497 original size:22 final size:22
Alignment explanation
Indices: 77388472--77388523 Score: 95
Period size: 22 Copynumber: 2.4 Consensus size: 22
77388462 AGGGTCACAT
77388472 GCCCGTGTGGACACAAGGGCAC
1 GCCCGTGTGGACACAAGGGCAC
*
77388494 GCCCGTGTGGACACAGGGGCAC
1 GCCCGTGTGGACACAAGGGCAC
77388516 GCCCGTGT
1 GCCCGTGT
77388524 CCTTAGGCCG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.17, C:0.33, G:0.38, T:0.12
Consensus pattern (22 bp):
GCCCGTGTGGACACAAGGGCAC
Found at i:77390139 original size:22 final size:22
Alignment explanation
Indices: 77390089--77390139 Score: 84
Period size: 22 Copynumber: 2.3 Consensus size: 22
77390079 CATCATAATA
77390089 GTATCATATAACATAAATGAGT
1 GTATCATATAACATAAATGAGT
*
77390111 GTGTCATATAACATAAATGAGT
1 GTATCATATAACATAAATGAGT
*
77390133 TTATCAT
1 GTATCAT
77390140 GGCAAGAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.41, C:0.10, G:0.14, T:0.35
Consensus pattern (22 bp):
GTATCATATAACATAAATGAGT
Found at i:77394028 original size:94 final size:94
Alignment explanation
Indices: 77393855--77394028 Score: 224
Period size: 94 Copynumber: 1.9 Consensus size: 94
77393845 TCATGTGTGA
* * * * *
77393855 GCTAGTGTAAGACATGGCTGGGAGATGCATCGGCCATATTATGAGAGCCAGTGTAAGGCCATGTG
1 GCTAGGGTAAGACATGGCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTG
**
77393920 TGGGACATGGCATCAGTATTGAGACGAGG
66 TGGGACATAACATCAGTATTGAGACGAGG
* * * *
77393949 GCTAGGGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCATGT
1 GCTAGGGTAAGACATGGCTGGGACATGCATCGGCCA-GATGATGAGAGCCAGTGTAAGACCATGT
*
77394013 TTGGGACATAACATCA
65 GTGGGACATAACATCA
77394029 ACTTGAGATA
Statistics
Matches: 67, Mismatches: 12, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
94 66 0.99
95 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.32, T:0.23
Consensus pattern (94 bp):
GCTAGGGTAAGACATGGCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATGTG
TGGGACATAACATCAGTATTGAGACGAGG
Found at i:77394725 original size:47 final size:47
Alignment explanation
Indices: 77394667--77394761 Score: 127
Period size: 47 Copynumber: 2.0 Consensus size: 47
77394657 CTTATATTGT
* * *
77394667 CCACACGGGTAGGCACATGGGCGTATGTCTAGCCCGTGTGTGACACA
1 CCACACAGGTAGGCACACGGGCGTACGTCTAGCCCGTGTGTGACACA
* * * *
77394714 CCACACAGGTAGGCACACGGGTGTGCGTCTGGGCCGTGTGTGACACA
1 CCACACAGGTAGGCACACGGGCGTACGTCTAGCCCGTGTGTGACACA
77394761 C
1 C
77394762 GGTCTACCCC
Statistics
Matches: 41, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 41 1.00
ACGTcount: A:0.20, C:0.28, G:0.34, T:0.18
Consensus pattern (47 bp):
CCACACAGGTAGGCACACGGGCGTACGTCTAGCCCGTGTGTGACACA
Found at i:77397787 original size:29 final size:30
Alignment explanation
Indices: 77397753--77397816 Score: 112
Period size: 30 Copynumber: 2.2 Consensus size: 30
77397743 CAAGTAGTTG
*
77397753 AAGCTAG-TTAAATCGCACATTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
77397782 AAGCTAGTTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTTAAATCGCACACTTAGTGCCA
77397812 AAGCT
1 AAGCT
77397817 TCTAATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (30 bp):
AAGCTAGTTTAAATCGCACACTTAGTGCCA
Found at i:77398584 original size:50 final size:50
Alignment explanation
Indices: 77398526--77398658 Score: 196
Period size: 50 Copynumber: 2.7 Consensus size: 50
77398516 CGGTTTTAAG
**
77398526 TGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-GATGGTT
1 TGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGGATAATT
77398575 ATGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGGATAATT
1 -TGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGGATAATT
* ***
77398626 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TGTCATGTGTGTAGTACTAAGTGCAGGCTACTA
77398659 TGCGTACCAG
Statistics
Matches: 76, Mismatches: 6, Indels: 2
0.90 0.07 0.02
Matches are distributed among these distances:
50 71 0.93
51 5 0.07
ACGTcount: A:0.25, C:0.15, G:0.28, T:0.32
Consensus pattern (50 bp):
TGTCATGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGGATAATT
Found at i:77407120 original size:30 final size:29
Alignment explanation
Indices: 77407073--77407140 Score: 118
Period size: 30 Copynumber: 2.3 Consensus size: 29
77407063 GCCTCAAGTA
*
77407073 GCCAAAGCTAGTTAAATCGCACATTTAGT
1 GCCAAAGCTAGTTAAATCGCACACTTAGT
77407102 GCCAAAGCTAGTTTAAATCGCACACTTAGT
1 GCCAAAGCTAG-TTAAATCGCACACTTAGT
77407132 GCCAAAGCT
1 GCCAAAGCT
77407141 TTCGATTCAT
Statistics
Matches: 37, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
29 11 0.30
30 26 0.70
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.25
Consensus pattern (29 bp):
GCCAAAGCTAGTTAAATCGCACACTTAGT
Found at i:77411831 original size:86 final size:86
Alignment explanation
Indices: 77411684--77411842 Score: 216
Period size: 86 Copynumber: 1.8 Consensus size: 86
77411674 ATATGTGTTC
* * *
77411684 TCGTGTAAGACCACATCTAGGACGTTCGCATCGATATGTGATTTCGATTAAGACCATGTCTGGGA
1 TCGTGTAAGACCACATCTAGGACGTTCGCATCGACATGTGATTACGATTAAGACCACGTCTGGGA
77411749 CATTGGCACCGTAATTGTGAT
66 CATTGGCACCGTAATTGTGAT
* *
77411770 TCGTGTAAGACC-CTATCTGGGACAG-TGGCATCGACATGTGATTAC-ATGTAAGACCACGTCTG
1 TCGTGTAAGACCAC-ATCTAGGAC-GTTCGCATCGACATGTGATTACGAT-TAAGACCACGTCTG
*
77411832 GGACGTTGGCA
63 GGACATTGGCA
77411843 TTGTATGATA
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
85 3 0.05
86 60 0.94
87 1 0.02
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (86 bp):
TCGTGTAAGACCACATCTAGGACGTTCGCATCGACATGTGATTACGATTAAGACCACGTCTGGGA
CATTGGCACCGTAATTGTGAT
Found at i:77411843 original size:43 final size:41
Alignment explanation
Indices: 77411687--77411843 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 41
77411677 TGTGTTCTCG
* *
77411687 TGTAAGACCACATCTAGGACGTTCGCATCGATATGTGATTTCGA
1 TGTAAGACCACATCTGGGACGTTGGCATCGA-ATGTGA-TTC-A
** * * *
77411731 T-TAAGACCATGTCTGGGACATTGGCACCGTAATTGTGATTCG
1 TGTAAGACCACATCTGGGACGTTGGCATCG-AA-TGTGATTCA
77411773 TGTAAGACC-CTATCTGGGACAG-TGGCATCGACATGTGATTACA
1 TGTAAGACCAC-ATCTGGGAC-GTTGGCATCGA-ATGTGATT-CA
*
77411816 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACATCTGGGACGTTGGCAT
77411844 TGTATGATAT
Statistics
Matches: 91, Mismatches: 13, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
42 10 0.11
43 73 0.80
44 8 0.09
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.28
Consensus pattern (41 bp):
TGTAAGACCACATCTGGGACGTTGGCATCGAATGTGATTCA
Found at i:77446956 original size:32 final size:32
Alignment explanation
Indices: 77446920--77446986 Score: 98
Period size: 32 Copynumber: 2.1 Consensus size: 32
77446910 GATTTCAAAA
77446920 GTTAACATTGATGTTAAATGAAGTCTTTGAAT
1 GTTAACATTGATGTTAAATGAAGTCTTTGAAT
* * * *
77446952 GTTAACATTGATGTTAACTGATGTTTTTGGAT
1 GTTAACATTGATGTTAAATGAAGTCTTTGAAT
77446984 GTT
1 GTT
77446987 GCTGGTAGAT
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.28, C:0.06, G:0.21, T:0.45
Consensus pattern (32 bp):
GTTAACATTGATGTTAAATGAAGTCTTTGAAT
Found at i:77451966 original size:54 final size:54
Alignment explanation
Indices: 77451833--77451966 Score: 232
Period size: 54 Copynumber: 2.5 Consensus size: 54
77451823 GTCATTATAA
* *
77451833 GGGATTTAGCCTGGACTGATAATCCCGAAATCACTTTATGAGGTCATATAATGG
1 GGGATTTAGCCTGGACTGGTAATCCTGAAATCACTTTATGAGGTCATATAATGG
* *
77451887 GGGATTTAGCCTAGACTGGTAATCCTGAAATCACTTTATGAGTTCATATAATGG
1 GGGATTTAGCCTGGACTGGTAATCCTGAAATCACTTTATGAGGTCATATAATGG
77451941 GGGATTTAGCCTGGACTGGTAATCCT
1 GGGATTTAGCCTGGACTGGTAATCCT
77451967 ACCATATGAT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
54 75 1.00
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (54 bp):
GGGATTTAGCCTGGACTGGTAATCCTGAAATCACTTTATGAGGTCATATAATGG
Found at i:77452160 original size:19 final size:19
Alignment explanation
Indices: 77452136--77452174 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
77452126 AAATTACATG
77452136 ATATATGATTATGTGACTA
1 ATATATGATTATGTGACTA
77452155 ATATATGATTATGTGACTA
1 ATATATGATTATGTGACTA
77452174 A
1 A
77452175 CTCATTGATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.38, C:0.05, G:0.15, T:0.41
Consensus pattern (19 bp):
ATATATGATTATGTGACTA
Found at i:77453800 original size:27 final size:27
Alignment explanation
Indices: 77453762--77453852 Score: 146
Period size: 27 Copynumber: 3.4 Consensus size: 27
77453752 GGGCCGAAAG
**
77453762 CCTCGATTTATAGAATTACTATTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
77453789 CCTCGATTTATAGAATTACCGTTTTAC
1 CCTCGATTTATAGAATTACCGTTTTAC
* *
77453816 CCTCGATTTACAGAATTACCGTTTTAT
1 CCTCGATTTATAGAATTACCGTTTTAC
77453843 CCTCGATTTA
1 CCTCGATTTA
77453853 CAAACTTATT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 60 1.00
ACGTcount: A:0.26, C:0.22, G:0.10, T:0.42
Consensus pattern (27 bp):
CCTCGATTTATAGAATTACCGTTTTAC
Found at i:77453894 original size:27 final size:27
Alignment explanation
Indices: 77453864--77454055 Score: 233
Period size: 27 Copynumber: 7.1 Consensus size: 27
77453854 AAACTTATTG
* **
77453864 AAATACCCTTAGTTTACAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* * **
77453891 AAATACCTC-AATCAGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
77453917 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
77453944 AAATACCCCTAGTTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
**
77453971 AAATACCCCTAACTTGTAAAATTACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
* *
77453998 AAATACCCCTGGTTTGTAAAATTACTA
1 AAATACCCCTAGTTTGTAAAATTACCA
* * * * *
77454025 AAATACCCTTGGTTTATTAAATCACCA
1 AAATACCCCTAGTTTGTAAAATTACCA
77454052 AAAT
1 AAAT
77454056 GGCTAAGAGT
Statistics
Matches: 142, Mismatches: 22, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 20 0.14
27 122 0.86
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (27 bp):
AAATACCCCTAGTTTGTAAAATTACCA
Found at i:77454017 original size:81 final size:80
Alignment explanation
Indices: 77453864--77454055 Score: 269
Period size: 81 Copynumber: 2.4 Consensus size: 80
77453854 AAACTTATTG
* *
77453864 AAATACCCTTAGTTTACAAAATTACCAAAATACCTCAATCAGTAAAATTACCAAAATACCCCTAG
1 AAATACCCTTAGTTTATAAAATTACCAAAATACCCCAATCAGTAAAATTACCAAAATACCCCTAG
77453929 TTTGTAAAATTACCA
66 TTTGTAAAATTACCA
* * *
77453944 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTAA-CTTGTAAAATTACCAAAATACCCCT
1 AAATACCCTTAGTTTATAAAATTACCAAAATACCCC-AATC-AGTAAAATTACCAAAATACCCCT
* *
77454008 GGTTTGTAAAATTACTA
64 AGTTTGTAAAATTACCA
* * *
77454025 AAATACCCTTGGTTTATTAAATCACCAAAAT
1 AAATACCCTTAGTTTATAAAATTACCAAAAT
77454056 GGCTAAGAGT
Statistics
Matches: 98, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
80 33 0.34
81 65 0.66
ACGTcount: A:0.43, C:0.22, G:0.06, T:0.29
Consensus pattern (80 bp):
AAATACCCTTAGTTTATAAAATTACCAAAATACCCCAATCAGTAAAATTACCAAAATACCCCTAG
TTTGTAAAATTACCA
Found at i:77454695 original size:27 final size:27
Alignment explanation
Indices: 77454665--77454900 Score: 249
Period size: 27 Copynumber: 8.7 Consensus size: 27
77454655 TTAGTTTACC
*
77454665 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
77454692 AAATTACCAAAATACCATTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * * *
77454719 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
77454746 AAATTACCAAAATACCCCTGGCTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
77454773 AAATTACCAAAATACCTTTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
77454800 AAATTATCAAAATACCCCTAGTTTTTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* ** *
77454827 AAATTACCAAAATACCCTTAATTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
** * **
77454854 AAATTACTGAAGTA-CCCTCGACTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
*
77454881 AAATTACCAAAGTACCCCTG
1 AAATTACCAAAATACCCCTG
77454901 ATTTATAGAA
Statistics
Matches: 173, Mismatches: 34, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 3 0.02
27 166 0.96
28 4 0.02
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:77454860 original size:81 final size:81
Alignment explanation
Indices: 77454656--77454843 Score: 288
Period size: 81 Copynumber: 2.3 Consensus size: 81
77454646 TAGAATACCT
** *
77454656 TAGTTTACCAAATCACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAA
*
77454721 ATTACTAAAATACCCT
66 ATTACTAAAATACCCC
* * *
77454737 TTGTTTATAAAATTACCAAAATACCCCTGGCTTGTAAAATTACCAAAATACCTTTGGTTTGTAAA
1 TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAA
77454802 ATTA-TCAAAATACCCC
66 ATTACT-AAAATACCCC
*
77454818 TAGTTTTTAAAATTACCAAAATACCC
1 TAGTTTATAAAATTACCAAAATACCC
77454844 TTAATTTGTG
Statistics
Matches: 97, Mismatches: 9, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
80 1 0.01
81 96 0.99
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.32
Consensus pattern (81 bp):
TAGTTTATAAAATTACCAAAATACCCCTGGTTTGTAAAATTACCAAAATACCATTGGTTTGTAAA
ATTACTAAAATACCCC
Found at i:77455020 original size:27 final size:27
Alignment explanation
Indices: 77454934--77455023 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
77454924 CTCGATTTAC
77454934 AAAATTACCGAAATACCCTTGTAGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
* * *
77454961 AGAAA-TACGGAAATACCCCTATAGGGT
1 A-AAATTACCGAAATACCCTTGTAGGGT
* * *
77454988 AGAATTACCGAGATACCCTTGTGGGGT
1 AAAATTACCGAAATACCCTTGTAGGGT
77455015 AAAATTACC
1 AAAATTACC
77455024 ATTTTGCCCG
Statistics
Matches: 51, Mismatches: 10, Indels: 4
0.78 0.15 0.06
Matches are distributed among these distances:
26 2 0.04
27 46 0.90
28 3 0.06
ACGTcount: A:0.37, C:0.19, G:0.21, T:0.23
Consensus pattern (27 bp):
AAAATTACCGAAATACCCTTGTAGGGT
Found at i:77455147 original size:27 final size:26
Alignment explanation
Indices: 77455109--77455373 Score: 352
Period size: 27 Copynumber: 9.9 Consensus size: 26
77455099 NNNNNNNNGA
77455109 AATACCCCTGTAGGGTAGAATTACCAG
1 AATACCCCTGTAGGGTAGAATTACC-G
*
77455136 AATACCCCTGTAGGGTAGAATTACTGG
1 AATACCCCTGTAGGGTAGAATTAC-CG
77455163 AATACCCCTGTAGGGTAGAATTACCGG
1 AATACCCCTGTAGGGTAGAATTACC-G
* *
77455190 AATACCCCTATAGGGTAGAATTACTGG
1 AATACCCCTGTAGGGTAGAATTAC-CG
*
77455217 AATACCCCTATAGGGTAGAATTACCG
1 AATACCCCTGTAGGGTAGAATTACCG
*
77455243 CAATATCCCTGTAGGGTAGAATTACCG
1 -AATACCCCTGTAGGGTAGAATTACCG
*
77455270 AAATACCCCTGTA-GGTAGAATTATCG
1 -AATACCCCTGTAGGGTAGAATTACCG
*
77455296 CAATACCCTTGTAGGGTAGAATTACCG
1 -AATACCCCTGTAGGGTAGAATTACCG
**
77455323 AAATACCCCTGTAGGGTAGAATTACTAA
1 -AATACCCCTGTAGGGTAGAATTAC-CG
*
77455351 AATACCCCTGTAGGGTGGAATTA
1 AATACCCCTGTAGGGTAGAATTA
77455374 ACGAGGTACC
Statistics
Matches: 214, Mismatches: 18, Indels: 12
0.88 0.07 0.05
Matches are distributed among these distances:
26 24 0.11
27 190 0.89
ACGTcount: A:0.32, C:0.20, G:0.22, T:0.25
Consensus pattern (26 bp):
AATACCCCTGTAGGGTAGAATTACCG
Found at i:77455880 original size:22 final size:22
Alignment explanation
Indices: 77455828--77455892 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
77455818 TTAAAGCCTT
* *
77455828 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
77455850 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
77455872 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
77455893 ACGTATTTGC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.20, C:0.23, G:0.23, T:0.34
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:77456081 original size:27 final size:27
Alignment explanation
Indices: 77456051--77456152 Score: 134
Period size: 27 Copynumber: 3.8 Consensus size: 27
77456041 ATTCTGTTAA
* *
77456051 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
*
77456078 GTGGCTATGCCACAAATATCTG-TTCTG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
77456105 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
77456132 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
77456153 ATAACTGAGC
Statistics
Matches: 67, Mismatches: 6, Indels: 4
0.87 0.08 0.05
Matches are distributed among these distances:
26 8 0.12
27 52 0.78
28 7 0.10
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:77456327 original size:6 final size:6
Alignment explanation
Indices: 77456312--77456408 Score: 83
Period size: 6 Copynumber: 15.8 Consensus size: 6
77456302 ACTTTGTTAC
* * *
77456312 CTGATA CTGATT CTGATT TTGATT CTG-TT ACTTGATA CTGATT CTGATT
1 CTGATT CTGATT CTGATT CTGATT CTGATT -C-TGATT CTGATT CTGATT
* *
77456361 CTGATT CTG-TCAC CTAATT CTGATT CTGATT CTGATT CT-AGTT CTGAT
1 CTGATT CTGAT--T CTGATT CTGATT CTGATT CTGATT CTGA-TT CTGAT
77456409 AATGTTTCTT
Statistics
Matches: 74, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
5 4 0.05
6 62 0.84
7 6 0.08
8 2 0.03
ACGTcount: A:0.20, C:0.18, G:0.15, T:0.47
Consensus pattern (6 bp):
CTGATT
Found at i:77456348 original size:31 final size:31
Alignment explanation
Indices: 77456306--77456424 Score: 143
Period size: 31 Copynumber: 3.9 Consensus size: 31
77456296 TTTTTTACTT
*
77456306 TGTTACCTGATACTGATTCTGATTTTGATTC
1 TGTTACCTGATACTGATTCTGATTCTGATTC
*
77456337 TGTTACTTGATACTGATTCTGATTCTGATTC
1 TGTTACCTGATACTGATTCTGATTCTGATTC
* * *
77456368 TGTCACCTAATTCTGATTCTGATTCTGATTC
1 TGTTACCTGATACTGATTCTGATTCTGATTC
* * *
77456399 TAGTT--CTGATAATGTTTCTTATTCTG
1 T-GTTACCTGATACTGATTCTGATTCTG
77456425 TAATGGGTTA
Statistics
Matches: 75, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
30 16 0.21
31 57 0.76
32 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (31 bp):
TGTTACCTGATACTGATTCTGATTCTGATTC
Found at i:77462080 original size:17 final size:17
Alignment explanation
Indices: 77462058--77462108 Score: 102
Period size: 17 Copynumber: 3.0 Consensus size: 17
77462048 TGGTAAGACT
77462058 TTTGAGGACGAAAGTCC
1 TTTGAGGACGAAAGTCC
77462075 TTTGAGGACGAAAGTCC
1 TTTGAGGACGAAAGTCC
77462092 TTTGAGGACGAAAGTCC
1 TTTGAGGACGAAAGTCC
77462109 CTAAGGGGGG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 34 1.00
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (17 bp):
TTTGAGGACGAAAGTCC
Found at i:77464512 original size:13 final size:13
Alignment explanation
Indices: 77464494--77464518 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
77464484 GTTCTCTCCC
77464494 ATGGTCGTGTGTT
1 ATGGTCGTGTGTT
77464507 ATGGTCGTGTGT
1 ATGGTCGTGTGT
77464519 CCCCTGCACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.08, G:0.40, T:0.44
Consensus pattern (13 bp):
ATGGTCGTGTGTT
Found at i:77472941 original size:43 final size:42
Alignment explanation
Indices: 77472877--77473043 Score: 160
Period size: 43 Copynumber: 3.9 Consensus size: 42
77472867 TAGGATTCCG
* *
77472877 ATATGTGATTTCGTGTAAGACCACGTTTGGGACGTTGGCATC
1 ATATGTGATTTAGTGTAAGACCACGTCTGGGACGTTGGCATC
* * *
77472919 AATTTGTGATTTAGTGTAAGACCATGTCTGGGACATTGGCATC
1 -ATATGTGATTTAGTGTAAGACCACGTCTGGGACGTTGGCATC
* * * * *
77472962 GTATATGAGTTCGTGTAAGACC-CTGTCTGGGATAG-TGGCATC
1 ATATGTGATTTAGTGTAAGACCAC-GTCTGGGA-CGTTGGCATC
* *
77473004 GATATGTGA-TTACATGTAAGACCATGTCTGGGACGTTGGC
1 -ATATGTGATTTA-GTGTAAGACCACGTCTGGGACGTTGGC
77473044 GTTGTACGAG
Statistics
Matches: 99, Mismatches: 19, Indels: 12
0.76 0.15 0.09
Matches are distributed among these distances:
42 35 0.35
43 64 0.65
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (42 bp):
ATATGTGATTTAGTGTAAGACCACGTCTGGGACGTTGGCATC
Found at i:77473012 original size:85 final size:85
Alignment explanation
Indices: 77472886--77473043 Score: 214
Period size: 85 Copynumber: 1.9 Consensus size: 85
77472876 GATATGTGAT
* * * *
77472886 TTCGTGTAAGACCACGTTTGGGACGTTGGCATCAATTTGTGATTTA-GTGTAAGACCATGTCTGG
1 TTCGTGTAAGACCACGTCTGGGAAGTTGGCATCAATATGTGA-TTACATGTAAGACCATGTCTGG
77472950 GACATTGGCATCGTATATGAG
65 GACATTGGCATCGTATATGAG
*
77472971 TTCGTGTAAGACC-CTGTCTGGGATAG-TGGCATCGATATGTGATTACATGTAAGACCATGTCTG
1 TTCGTGTAAGACCAC-GTCTGGGA-AGTTGGCATCAATATGTGATTACATGTAAGACCATGTCTG
*
77473034 GGACGTTGGC
64 GGACATTGGC
77473044 GTTGTACGAG
Statistics
Matches: 64, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
84 4 0.06
85 59 0.92
86 1 0.02
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (85 bp):
TTCGTGTAAGACCACGTCTGGGAAGTTGGCATCAATATGTGATTACATGTAAGACCATGTCTGGG
ACATTGGCATCGTATATGAG
Found at i:77477595 original size:37 final size:37
Alignment explanation
Indices: 77477551--77477624 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
77477541 TCATGAGATA
77477551 GAATTTTTATTATAGACTTAATTAAATAATGCATGAT
1 GAATTTTTATTATAGACTTAATTAAATAATGCATGAT
*
77477588 GAATTTTTATTATAGACTTAATTATATAATGCATGAT
1 GAATTTTTATTATAGACTTAATTAAATAATGCATGAT
77477625 AATGAACTTA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.39, C:0.05, G:0.11, T:0.45
Consensus pattern (37 bp):
GAATTTTTATTATAGACTTAATTAAATAATGCATGAT
Found at i:77478659 original size:26 final size:26
Alignment explanation
Indices: 77478616--77478678 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
77478606 TCTCATCCTT
* *
77478616 ATTTTACTCCCAGAAAAA-ATTTCACG
1 ATTTTAC-CCCAGAAAAATATTTAACA
* *
77478642 ATTTTACCCTCAGTAAAATTTTTAACA
1 ATTTTACCC-CAGAAAAATATTTAACA
77478669 ATTTTACCCC
1 ATTTTACCCC
77478679 TGGTAAATTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
25 2 0.06
26 15 0.48
27 14 0.45
ACGTcount: A:0.35, C:0.24, G:0.05, T:0.37
Consensus pattern (26 bp):
ATTTTACCCCAGAAAAATATTTAACA
Found at i:77480812 original size:46 final size:46
Alignment explanation
Indices: 77480752--77481071 Score: 552
Period size: 46 Copynumber: 7.0 Consensus size: 46
77480742 TTTGACATGA
* * * * * *
77480752 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATATCAGGT
* *
77480798 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77480844 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77480890 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77480936 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77480982 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
77481028 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
77481072 AGAGCACACT
Statistics
Matches: 267, Mismatches: 6, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
45 4 0.01
46 263 0.99
ACGTcount: A:0.23, C:0.24, G:0.15, T:0.38
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
Found at i:77489049 original size:46 final size:47
Alignment explanation
Indices: 77488984--77489121 Score: 174
Period size: 46 Copynumber: 3.0 Consensus size: 47
77488974 TTATCTTTGA
* * * * *
77488984 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
**
77489030 CATGTTGCCATGGTATCTTTCAACCATGGTCTTGTTCA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
* *
77489076 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
77489122 NNNNNNNNNN
Statistics
Matches: 80, Mismatches: 11, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
45 4 0.05
46 76 0.95
ACGTcount: A:0.21, C:0.23, G:0.14, T:0.41
Consensus pattern (47 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTTCATAT
Found at i:77496474 original size:9 final size:9
Alignment explanation
Indices: 77496458--77496536 Score: 131
Period size: 9 Copynumber: 8.8 Consensus size: 9
77496448 GGTATTTTTC
77496458 GGTAATTCG
1 GGTAATTCG
*
77496467 GTTAATTCG
1 GGTAATTCG
*
77496476 GTTAATTCG
1 GGTAATTCG
*
77496485 GTTAATTCG
1 GGTAATTCG
77496494 GGTAATTCG
1 GGTAATTCG
77496503 GGTAATTCG
1 GGTAATTCG
77496512 GGTAATTCG
1 GGTAATTCG
77496521 GGTAATTCG
1 GGTAATTCG
77496530 GGTAATT
1 GGTAATT
77496537 TTTAACCAAA
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 68 1.00
ACGTcount: A:0.23, C:0.10, G:0.29, T:0.38
Consensus pattern (9 bp):
GGTAATTCG
Found at i:77497792 original size:39 final size:40
Alignment explanation
Indices: 77497736--77497825 Score: 110
Period size: 41 Copynumber: 2.2 Consensus size: 40
77497726 ACAAGTATTT
* * *
77497736 TTTTTTTGTTAATAATA-TGCTTAATATAAAATTTTGATA
1 TTTTATTGTTAAAAATATTACTTAATATAAAATTTTGATA
* *
77497775 TTTTATTGTTAAAAATATTTATTTAATTTAAAATTTTGATA
1 TTTTATTGTTAAAAATA-TTACTTAATATAAAATTTTGATA
77497816 TTGTTATTGT
1 TT-TTATTGT
77497826 CGATAACGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
39 15 0.35
41 21 0.49
42 7 0.16
ACGTcount: A:0.34, C:0.01, G:0.08, T:0.57
Consensus pattern (40 bp):
TTTTATTGTTAAAAATATTACTTAATATAAAATTTTGATA
Found at i:77497843 original size:41 final size:41
Alignment explanation
Indices: 77497757--77497851 Score: 102
Period size: 41 Copynumber: 2.3 Consensus size: 41
77497747 ATAATATGCT
* * * *
77497757 TAATATAAAATTTTGATATTTTATTGTTAAAAATATTTATT
1 TAATTTAAAATTTTGATATTTTATTGTCAAAAATAGTTATC
* * *
77497798 TAATTTAAAATTTTGATATTGTTATTGTCGATAA-CGTTATC
1 TAATTTAAAATTTTGATATT-TTATTGTCAAAAATAGTTATC
*
77497839 TAATTTAACATTT
1 TAATTTAAAATTT
77497852 ATGGGATAAG
Statistics
Matches: 45, Mismatches: 8, Indels: 2
0.82 0.15 0.04
Matches are distributed among these distances:
41 35 0.78
42 10 0.22
ACGTcount: A:0.37, C:0.04, G:0.07, T:0.52
Consensus pattern (41 bp):
TAATTTAAAATTTTGATATTTTATTGTCAAAAATAGTTATC
Found at i:77499154 original size:14 final size:14
Alignment explanation
Indices: 77499135--77499168 Score: 54
Period size: 12 Copynumber: 2.6 Consensus size: 14
77499125 ACGCCACACG
77499135 CGTGTGTGGTTGGC
1 CGTGTGTGGTTGGC
77499149 C--GTGTGGTTGGC
1 CGTGTGTGGTTGGC
77499161 CGTGTGTG
1 CGTGTGTG
77499169 AGACACGACC
Statistics
Matches: 18, Mismatches: 0, Indels: 4
0.82 0.00 0.18
Matches are distributed among these distances:
12 12 0.67
14 6 0.33
ACGTcount: A:0.00, C:0.15, G:0.50, T:0.35
Consensus pattern (14 bp):
CGTGTGTGGTTGGC
Found at i:77499155 original size:12 final size:12
Alignment explanation
Indices: 77499138--77499166 Score: 58
Period size: 12 Copynumber: 2.4 Consensus size: 12
77499128 CCACACGCGT
77499138 GTGTGGTTGGCC
1 GTGTGGTTGGCC
77499150 GTGTGGTTGGCC
1 GTGTGGTTGGCC
77499162 GTGTG
1 GTGTG
77499167 TGAGACACGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.00, C:0.14, G:0.52, T:0.34
Consensus pattern (12 bp):
GTGTGGTTGGCC
Found at i:77500098 original size:24 final size:24
Alignment explanation
Indices: 77500070--77500117 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
77500060 TTGGAATTTA
* *
77500070 TTCTTCATTTTGAACCTATAGGGG
1 TTCTTCATTTCGAACCTACAGGGG
77500094 TTCTTCATTTCGAACCTACAGGGG
1 TTCTTCATTTCGAACCTACAGGGG
77500118 CTTTCACACG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.38
Consensus pattern (24 bp):
TTCTTCATTTCGAACCTACAGGGG
Found at i:77500175 original size:28 final size:29
Alignment explanation
Indices: 77500121--77500175 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
77500111 ACAGGGGCTT
*
77500121 TCACACGGCCGAGCACACACCGGTGTCCC
1 TCACACGGCCGAGCACACACCCGTGTCCC
* *
77500150 TCACACGGCCTAG-ACACGCCCGTGTC
1 TCACACGGCCGAGCACACACCCGTGTC
77500176 ATAGCCCGTG
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
28 11 0.48
29 12 0.52
ACGTcount: A:0.20, C:0.44, G:0.24, T:0.13
Consensus pattern (29 bp):
TCACACGGCCGAGCACACACCCGTGTCCC
Found at i:77506998 original size:42 final size:42
Alignment explanation
Indices: 77506951--77507064 Score: 129
Period size: 43 Copynumber: 2.7 Consensus size: 42
77506941 ATTAAGATTA
*
77506951 CGTGTAAGACCATATCTAGGATATGGCATCGATAAGAGACTT
1 CGTGTAAGACCATATCTAGGATATGGCATCAATAAGAGACTT
* * * * * * *
77506993 CGTGTAAGACCATAGCTGGGCTATTGCCATTAATATGAGATTT
1 CGTGTAAGACCATATCTAGGATA-TGGCATCAATAAGAGACTT
* *
77507036 CATGTAAGACCATATCTAGGATACGGCAT
1 CGTGTAAGACCATATCTAGGATATGGCAT
77507065 TGGTATGGTA
Statistics
Matches: 57, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 24 0.42
43 33 0.58
ACGTcount: A:0.32, C:0.18, G:0.23, T:0.28
Consensus pattern (42 bp):
CGTGTAAGACCATATCTAGGATATGGCATCAATAAGAGACTT
Found at i:77511630 original size:16 final size:16
Alignment explanation
Indices: 77511609--77511642 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
77511599 CTGACACAAA
*
77511609 TGTGTATTTGCTTTGG
1 TGTGTATTTACTTTGG
77511625 TGTGTATTTACTTTGG
1 TGTGTATTTACTTTGG
77511641 TG
1 TG
77511643 GTTAAGTGTT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.09, C:0.06, G:0.29, T:0.56
Consensus pattern (16 bp):
TGTGTATTTACTTTGG
Found at i:77514347 original size:21 final size:20
Alignment explanation
Indices: 77514319--77514368 Score: 59
Period size: 21 Copynumber: 2.5 Consensus size: 20
77514309 TTTTTTAAAA
77514319 TATA-AAATTCATAAA-ATAT
1 TATAGAAATTCATAAATA-AT
*
77514338 TAATAGAAATTTATAAATAAT
1 T-ATAGAAATTCATAAATAAT
77514359 TATAGAAATT
1 TATAGAAATT
77514369 ATAGAAAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 1 0.04
20 12 0.44
21 13 0.48
22 1 0.04
ACGTcount: A:0.56, C:0.02, G:0.04, T:0.38
Consensus pattern (20 bp):
TATAGAAATTCATAAATAAT
Found at i:77514377 original size:10 final size:10
Alignment explanation
Indices: 77514322--77514436 Score: 69
Period size: 10 Copynumber: 11.4 Consensus size: 10
77514312 TTTAAAATAT
77514322 AAAATTCATA-
1 AAAATT-ATAG
77514332 AAATATTAATAG
1 AAA-ATT-ATAG
*
77514344 AAATTTATA-
1 AAAATTATAG
77514353 AATAATTATAG
1 AA-AATTATAG
77514364 -AAATTATAG
1 AAAATTATAG
*
77514373 AAAATTTTTA-
1 AAAA-TTATAG
** *
77514383 AATGTTATAA
1 AAAATTATAG
*
77514393 AAAAAT-TAG
1 AAAATTATAG
*
77514402 AAAAATATAG
1 AAAATTATAG
*
77514412 AAAAATTATAA
1 -AAAATTATAG
77514423 AAAATTATAG
1 AAAATTATAG
77514433 AAAA
1 AAAA
77514437 AAGTATAGAA
Statistics
Matches: 82, Mismatches: 14, Indels: 18
0.72 0.12 0.16
Matches are distributed among these distances:
9 22 0.27
10 37 0.45
11 20 0.24
12 3 0.04
ACGTcount: A:0.61, C:0.01, G:0.06, T:0.32
Consensus pattern (10 bp):
AAAATTATAG
Done.