Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 227 of 297
Found at i:77514409 original size:72 final size:71
Alignment explanation
Indices: 77514331--77514492 Score: 181
Period size: 72 Copynumber: 2.3 Consensus size: 71
77514321 TAAAATTCAT
* * *
77514331 AAAATATTAATAGAAATTTATAAATAATTATAG-AAATTATAGAAA-ATTTTTAAATGTTATAAA
1 AAAATA-TAATA-AAATTTATAAAAAATTATAGAAAAGTATAGAAAGA-TCTTAAATGTTATAAA
77514394 AAAATTAGA
63 AAAATTAGA
77514403 AAAATATAGA-AAAA-TTATAAAAAATTATAGAAAAAAGTATAGAAAGATCTTAAATGTTATAAA
1 AAAATATA-ATAAAATTTATAAAAAATTATAG--AAAAGTATAGAAAGATCTTAAATGTTATAAA
* *
77514466 AAACTTATA
63 AAAATTAGA
*
77514475 ATAATAT-ATAAAATTTAT
1 AAAATATAATAAAATTTAT
77514493 TCAAATTATT
Statistics
Matches: 77, Mismatches: 6, Indels: 14
0.79 0.06 0.14
Matches are distributed among these distances:
69 15 0.19
70 4 0.05
71 7 0.09
72 50 0.65
73 1 0.01
ACGTcount: A:0.59, C:0.01, G:0.07, T:0.33
Consensus pattern (71 bp):
AAAATATAATAAAATTTATAAAAAATTATAGAAAAGTATAGAAAGATCTTAAATGTTATAAAAAA
ATTAGA
Found at i:77514415 original size:21 final size:22
Alignment explanation
Indices: 77514391--77514447 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 22
77514381 TAAATGTTAT
77514391 AAAAAAATTAGAAAAA-TATAG
1 AAAAAAATTAGAAAAATTATAG
*
77514412 --AAAAATTATAAAAAATTATAG
1 AAAAAAATTA-GAAAAATTATAG
*
77514433 AAAAAAGTATAGAAA
1 AAAAAAAT-TAGAAA
77514448 GATCTTAAAT
Statistics
Matches: 28, Mismatches: 3, Indels: 8
0.72 0.08 0.21
Matches are distributed among these distances:
19 8 0.29
20 5 0.18
21 5 0.18
23 8 0.29
24 2 0.07
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (22 bp):
AAAAAAATTAGAAAAATTATAG
Found at i:77514416 original size:11 final size:11
Alignment explanation
Indices: 77514388--77514447 Score: 65
Period size: 10 Copynumber: 5.7 Consensus size: 11
77514378 TTTTAAATGT
77514388 TATA-AAAAAA
1 TATAGAAAAAA
77514398 T-TAG-AAAAA
1 TATAGAAAAAA
*
77514407 TATAGAAAAAT
1 TATAGAAAAAA
*
77514418 TATA-AAAAAT
1 TATAGAAAAAA
77514428 TATAGAAAAAA
1 TATAGAAAAAA
77514439 GTATAGAAA
1 -TATAGAAA
77514448 GATCTTAAAT
Statistics
Matches: 43, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
9 8 0.19
10 14 0.33
11 13 0.30
12 8 0.19
ACGTcount: A:0.68, C:0.00, G:0.08, T:0.23
Consensus pattern (11 bp):
TATAGAAAAAA
Found at i:77518536 original size:39 final size:39
Alignment explanation
Indices: 77518482--77518646 Score: 242
Period size: 39 Copynumber: 4.2 Consensus size: 39
77518472 TTCAGTGATG
*
77518482 TATATTCGGACTTAGGGTCCGCAGGCTATCTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATCTGCTGGAAT
* * *
77518521 TGTATCCGGACTTAGGGTCCGTAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATCTGCTGGAAT
*
77518560 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATCTGCTGGAAT
* *
77518599 TATATCCGGACTTACGGTCCGCAGGCTA-CGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATC-TGCTGGAAT
*
77518638 TATGTCCGG
1 TATATCCGG
77518647 GCTAAAGTCC
Statistics
Matches: 115, Mismatches: 10, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
39 115 1.00
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATCTGCTGGAAT
Found at i:77523966 original size:20 final size:20
Alignment explanation
Indices: 77523938--77523978 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
77523928 ATATATCTTG
*
77523938 ATTTTATTTGATTCTAATCA
1 ATTTGATTTGATTCTAATCA
*
77523958 ATTTGATTTGATTTTAATCA
1 ATTTGATTTGATTCTAATCA
77523978 A
1 A
77523979 ATTAATTTAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.32, C:0.07, G:0.07, T:0.54
Consensus pattern (20 bp):
ATTTGATTTGATTCTAATCA
Found at i:77523986 original size:20 final size:20
Alignment explanation
Indices: 77523943--77523986 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
77523933 TCTTGATTTT
* *
77523943 ATTTGATTCTAATCAATTTG
1 ATTTGATTCTAATCAAATTA
*
77523963 ATTTGATTTTAATCAAATTA
1 ATTTGATTCTAATCAAATTA
77523983 ATTT
1 ATTT
77523987 AATTGCCCCT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.07, G:0.07, T:0.52
Consensus pattern (20 bp):
ATTTGATTCTAATCAAATTA
Found at i:77536292 original size:17 final size:17
Alignment explanation
Indices: 77536272--77536370 Score: 144
Period size: 17 Copynumber: 5.6 Consensus size: 17
77536262 CAATGATATG
77536272 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
77536289 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
77536307 CAATCTTAGATATGATA
1 CAATCTTAGATATGATA
*
77536324 CAATCTTAGATATGATTG
1 CAATCTTAGATATGA-TA
77536342 CAATCTTAGATATGATATA
1 CAATCTTAGATATG--ATA
77536361 CAATCTTAGA
1 CAATCTTAGA
77536371 AGATATGATT
Statistics
Matches: 74, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
17 31 0.42
18 31 0.42
19 11 0.15
20 1 0.01
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (17 bp):
CAATCTTAGATATGATA
Found at i:77536310 original size:35 final size:35
Alignment explanation
Indices: 77536264--77536370 Score: 187
Period size: 35 Copynumber: 3.0 Consensus size: 35
77536254 ATAATCTTCA
77536264 ATGATATGCAATCTTAGATATGATACAATCTTAGAT
1 ATGAT-TGCAATCTTAGATATGATACAATCTTAGAT
77536300 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
1 ATGATTGCAATCTTAGATATGATACAATCTTAGAT
77536335 ATGATTGCAATCTTAGATATGATATACAATCTTAGA
1 ATGATTGCAATCTTAGATATG--ATACAATCTTAGA
77536371 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
35 51 0.74
36 5 0.07
37 13 0.19
ACGTcount: A:0.38, C:0.11, G:0.14, T:0.36
Consensus pattern (35 bp):
ATGATTGCAATCTTAGATATGATACAATCTTAGAT
Found at i:77536312 original size:18 final size:18
Alignment explanation
Indices: 77536272--77536370 Score: 157
Period size: 18 Copynumber: 5.6 Consensus size: 18
77536262 CAATGATATG
77536272 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
77536289 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
77536307 CAATCTTAGATATGA-TA
1 CAATCTTAGATATGATTA
*
77536324 CAATCTTAGATATGATTG
1 CAATCTTAGATATGATTA
77536342 CAATCTTAGATATGATATA
1 CAATCTTAGATATGAT-TA
77536361 CAATCTTAGA
1 CAATCTTAGA
77536371 AGATATGATT
Statistics
Matches: 75, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
17 31 0.41
18 33 0.44
19 11 0.15
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.36
Consensus pattern (18 bp):
CAATCTTAGATATGATTA
Found at i:77536878 original size:17 final size:17
Alignment explanation
Indices: 77536858--77536923 Score: 66
Period size: 17 Copynumber: 3.9 Consensus size: 17
77536848 TTCTAAACCA
*
77536858 ATATATTTTATATTTTT
1 ATATATATTATATTTTT
*
77536875 ATATA-ATTATTATTCTT
1 ATATATATTA-TATTTTT
*
77536892 ATAAATA-TAT-TTTTT
1 ATATATATTATATTTTT
77536907 ATTATATATTATATTTT
1 A-TATATATTATATTTT
77536924 AAATTTATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 9
0.74 0.09 0.17
Matches are distributed among these distances:
15 5 0.13
16 9 0.23
17 20 0.51
18 5 0.13
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.64
Consensus pattern (17 bp):
ATATATATTATATTTTT
Found at i:77536948 original size:26 final size:26
Alignment explanation
Indices: 77536900--77536949 Score: 64
Period size: 26 Copynumber: 1.9 Consensus size: 26
77536890 TTATAAATAT
* * * *
77536900 ATTTTTTATTATATATTATATTTTAA
1 ATTTATTATTAAATATCACATTTTAA
77536926 ATTTATTATTAAATATCACATTTT
1 ATTTATTATTAAATATCACATTTT
77536950 TTTATATGCT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.00, T:0.60
Consensus pattern (26 bp):
ATTTATTATTAAATATCACATTTTAA
Found at i:77538696 original size:34 final size:35
Alignment explanation
Indices: 77538647--77538722 Score: 109
Period size: 34 Copynumber: 2.2 Consensus size: 35
77538637 GAAACTGCAT
* * *
77538647 GACTGATACTGATACTGAGATGGGCTAAGGCCCAA
1 GACTGTTACTGATACTGAAAGGGGCTAAGGCCCAA
*
77538682 -ACTGTTACTGATACTGAAAGGGGCTTAGGCCCAA
1 GACTGTTACTGATACTGAAAGGGGCTAAGGCCCAA
77538716 GACTGTT
1 GACTGTT
77538723 TGACTAGGCA
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
34 30 0.83
35 6 0.17
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.24
Consensus pattern (35 bp):
GACTGTTACTGATACTGAAAGGGGCTAAGGCCCAA
Found at i:77543930 original size:42 final size:42
Alignment explanation
Indices: 77543883--77543976 Score: 109
Period size: 42 Copynumber: 2.2 Consensus size: 42
77543873 ATGAGTTTTC
* *
77543883 GTTTAACCCTAATGG-GTTCCAGTTTAGCTCTTTTGAGCTTCA
1 GTTTAACCCTAATGGAGTTCC-GTTCAGCTCTTATGAGCTTCA
* * * *
77543925 GTTTAACCCTTATGGATTTTCGTTCAGCTCTTATGAGCTTCC
1 GTTTAACCCTAATGGAGTTCCGTTCAGCTCTTATGAGCTTCA
*
77543967 GTTCAACCCT
1 GTTTAACCCT
77543977 TATTGGTTTC
Statistics
Matches: 44, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
42 41 0.93
43 3 0.07
ACGTcount: A:0.18, C:0.24, G:0.17, T:0.40
Consensus pattern (42 bp):
GTTTAACCCTAATGGAGTTCCGTTCAGCTCTTATGAGCTTCA
Found at i:77543978 original size:21 final size:21
Alignment explanation
Indices: 77543916--77543979 Score: 58
Period size: 21 Copynumber: 3.0 Consensus size: 21
77543906 TTAGCTCTTT
* *
77543916 TGAGCTTCAGTTTAACCCTTA
1 TGAGCTTCCGTTCAACCCTTA
* * * *
77543937 TG-GATTTTCGTTCAGCTCTTA
1 TGAG-CTTCCGTTCAACCCTTA
77543958 TGAGCTTCCGTTCAACCCTTA
1 TGAGCTTCCGTTCAACCCTTA
77543979 T
1 T
77543980 TGGTTTCCCT
Statistics
Matches: 31, Mismatches: 10, Indels: 4
0.69 0.22 0.09
Matches are distributed among these distances:
20 1 0.03
21 29 0.94
22 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.16, T:0.41
Consensus pattern (21 bp):
TGAGCTTCCGTTCAACCCTTA
Found at i:77543987 original size:21 final size:20
Alignment explanation
Indices: 77543929--77543987 Score: 55
Period size: 21 Copynumber: 2.8 Consensus size: 20
77543919 GCTTCAGTTT
*
77543929 AACCCTTATGGATTTTCGTTC
1 AACCCTTATGG-TTTCCGTTC
* * *
77543950 AGCTCTTATGAGCTTCCGTTC
1 AACCCTTATG-GTTTCCGTTC
77543971 AACCCTTATTGGTTTCC
1 AACCCTTA-TGGTTTCC
77543988 CTTTAGCACT
Statistics
Matches: 29, Mismatches: 7, Indels: 4
0.73 0.17 0.10
Matches are distributed among these distances:
21 26 0.90
22 3 0.10
ACGTcount: A:0.17, C:0.27, G:0.15, T:0.41
Consensus pattern (20 bp):
AACCCTTATGGTTTCCGTTC
Found at i:77544000 original size:42 final size:42
Alignment explanation
Indices: 77543905--77544006 Score: 116
Period size: 42 Copynumber: 2.4 Consensus size: 42
77543895 TGGGTTCCAG
* * * *
77543905 TTTAGCTCTTTTGAGCTTCAGTTTAACCCTTATGGATTTTCG
1 TTTAGCTCTTATGAGCTTCAGTTCAACCCTTATGGATTTCCC
* *
77543947 TTCAGCTCTTATGAGCTTCCGTTCAACCCTTATTGG-TTTCCC
1 TTTAGCTCTTATGAGCTTCAGTTCAACCCTTA-TGGATTTCCC
* *
77543989 TTTAGCACTTATGTGCTT
1 TTTAGCTCTTATGAGCTT
77544007 TTATGTAGCT
Statistics
Matches: 50, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
42 47 0.94
43 3 0.06
ACGTcount: A:0.16, C:0.24, G:0.16, T:0.45
Consensus pattern (42 bp):
TTTAGCTCTTATGAGCTTCAGTTCAACCCTTATGGATTTCCC
Found at i:77545585 original size:28 final size:28
Alignment explanation
Indices: 77545553--77545680 Score: 184
Period size: 29 Copynumber: 4.5 Consensus size: 28
77545543 ATAGTAAGTC
*
77545553 CGCACACTTAGTGTTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
*
77545581 CGCACACTTAGTGCTTACATAATCAAACT
1 CGCACACTTAGTGC-TATATAATCAAACT
77545610 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
77545638 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
77545667 CGCACACTTAGTGC
1 CGCACACTTAGTGC
77545681 CAATCTCATG
Statistics
Matches: 91, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
28 45 0.49
29 46 0.51
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:77545641 original size:57 final size:57
Alignment explanation
Indices: 77545552--77545680 Score: 206
Period size: 57 Copynumber: 2.3 Consensus size: 57
77545542 TATAGTAAGT
*
77545552 CCGCACACTTAGTGTTATATAATCAAACTCGCACACTTAGTGCT-TACATAATCAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTGTACA-AATCAAAC
* * *
77545609 TCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTGTACAAATCAAAC
77545666 CCGCACACTTAGTGC
1 CCGCACACTTAGTGC
77545681 CAATCTCATG
Statistics
Matches: 66, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
57 62 0.94
58 4 0.06
ACGTcount: A:0.33, C:0.27, G:0.12, T:0.28
Consensus pattern (57 bp):
CCGCACACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCTGTACAAATCAAAC
Found at i:77553053 original size:8 final size:8
Alignment explanation
Indices: 77553040--77553071 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
77553030 CTAGATCGGC
77553040 AAAAGCCG
1 AAAAGCCG
77553048 AAAAGCCG
1 AAAAGCCG
*
77553056 AAATGCCG
1 AAAAGCCG
77553064 AAAAGCCG
1 AAAAGCCG
77553072 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:77553358 original size:28 final size:28
Alignment explanation
Indices: 77553318--77553382 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
77553308 ATGTACTAGA
*
77553318 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
77553346 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
77553374 ATACCCCTA
1 ATACCCCTA
77553383 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:77553546 original size:27 final size:27
Alignment explanation
Indices: 77553488--77553577 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
77553478 AGGAAGCGTC
77553488 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
77553516 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
77553543 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
77553572 CTGGTG
1 CTGGTG
77553578 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:77553596 original size:55 final size:56
Alignment explanation
Indices: 77553488--77553602 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
77553478 AGGAAGCGTC
* *
77553488 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
77553543 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
77553599 CTGG
1 CTGG
77553603 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:77563839 original size:45 final size:45
Alignment explanation
Indices: 77563718--77563842 Score: 162
Period size: 45 Copynumber: 2.8 Consensus size: 45
77563708 CGCATCCATA
*
77563718 ATGAACTCAGACCAACTCAACGAGCTCGGA-TGCTTCACATATACC
1 ATGAACTCAGACCAACTCAACGAGCTCGGATTTC-TCACATATACC
* ** * * *
77563763 ACGAACTTGGACCAACTCAACAAGTTCGGATTTCTCACATATATC
1 ATGAACTCAGACCAACTCAACGAGCTCGGATTTCTCACATATACC
*
77563808 ATGAACTCAGACCAAATCAACGAGCTCGGATTTCT
1 ATGAACTCAGACCAACTCAACGAGCTCGGATTTCT
77563843 TGATTCCTAG
Statistics
Matches: 66, Mismatches: 13, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
45 64 0.97
46 2 0.03
ACGTcount: A:0.34, C:0.28, G:0.15, T:0.23
Consensus pattern (45 bp):
ATGAACTCAGACCAACTCAACGAGCTCGGATTTCTCACATATACC
Found at i:77576372 original size:28 final size:28
Alignment explanation
Indices: 77576334--77576487 Score: 256
Period size: 28 Copynumber: 5.5 Consensus size: 28
77576324 TAAATTGTAC
*
77576334 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77576362 AGCACTAAGTGTGCGAATTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
77576390 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77576418 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77576446 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCGAGTTTGATTATGT
*
77576473 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
77576488 GACTTAATAT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
27 24 0.20
28 97 0.80
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
AGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:77578053 original size:52 final size:52
Alignment explanation
Indices: 77577975--77578080 Score: 194
Period size: 52 Copynumber: 2.0 Consensus size: 52
77577965 TTAATGTCTG
77577975 TTAACACCTCGTGTTCGACTCCGGTGTCGGTCTCGAGTTCGGGGTGTTACAT
1 TTAACACCTCGTGTTCGACTCCGGTGTCGGTCTCGAGTTCGGGGTGTTACAT
* *
77578027 TTAACATCTCGTGTTCGACTCCGGTGTCGGTCTCGGGTTCGGGGTGTTACAT
1 TTAACACCTCGTGTTCGACTCCGGTGTCGGTCTCGAGTTCGGGGTGTTACAT
77578079 TT
1 TT
77578081 GATTATTATC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.12, C:0.24, G:0.29, T:0.35
Consensus pattern (52 bp):
TTAACACCTCGTGTTCGACTCCGGTGTCGGTCTCGAGTTCGGGGTGTTACAT
Found at i:77579182 original size:290 final size:290
Alignment explanation
Indices: 77578662--77579195 Score: 1068
Period size: 290 Copynumber: 1.8 Consensus size: 290
77578652 ATTTCCATAG
77578662 TCCCAAACGAACGAGTAACTTGGGACTTCTTTCAGACGGAATTTCGAAAGAAATATATTAGTCAA
1 TCCCAAACGAACGAGTAACTTGGGACTTCTTTCAGACGGAATTTCGAAAGAAATATATTAGTCAA
77578727 CGGTTCATTGATCAAAAGCGTAAGGAATTCTTGGAACTCAAGCAAGGCCGTATGACAGTATCTGA
66 CGGTTCATTGATCAAAAGCGTAAGGAATTCTTGGAACTCAAGCAAGGCCGTATGACAGTATCTGA
77578792 ATACGAACATGAATTCGTAAGGCTCAGTAGGTATGCCTGGGAGTGTGTAGCTGATGAGGTTGCTA
131 ATACGAACATGAATTCGTAAGGCTCAGTAGGTATGCCTGGGAGTGTGTAGCTGATGAGGTTGCTA
77578857 TGTGCAAAAGATTCGAAGAAGGATTGAATGAAGATTTAAAGCTACTAATAGGTATTTTGGAAATA
196 TGTGCAAAAGATTCGAAGAAGGATTGAATGAAGATTTAAAGCTACTAATAGGTATTTTGGAAATA
77578922 AAAGAATTCGTAACGATAGTCGAACGAGCC
261 AAAGAATTCGTAACGATAGTCGAACGAGCC
77578952 TCCCAAACGAACGAGTAACTTGGGACTTCTTTCAGACGGAATTTCGAAAGAAATATATTAGTCAA
1 TCCCAAACGAACGAGTAACTTGGGACTTCTTTCAGACGGAATTTCGAAAGAAATATATTAGTCAA
77579017 CGGTTCATTGATCAAAAGCGTAAGGAATTCTTGGAACTCAAGCAAGGCCGTATGACAGTATCTGA
66 CGGTTCATTGATCAAAAGCGTAAGGAATTCTTGGAACTCAAGCAAGGCCGTATGACAGTATCTGA
77579082 ATACGAACATGAATTCGTAAGGCTCAGTAGGTATGCCTGGGAGTGTGTAGCTGATGAGGTTGCTA
131 ATACGAACATGAATTCGTAAGGCTCAGTAGGTATGCCTGGGAGTGTGTAGCTGATGAGGTTGCTA
77579147 TGTGCAAAAGATTCGAAGAAGGATTGAATGAAGATTTAAAGCTACTAAT
196 TGTGCAAAAGATTCGAAGAAGGATTGAATGAAGATTTAAAGCTACTAAT
77579196 NNNNNNNNNN
Statistics
Matches: 244, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
290 244 1.00
ACGTcount: A:0.34, C:0.15, G:0.25, T:0.26
Consensus pattern (290 bp):
TCCCAAACGAACGAGTAACTTGGGACTTCTTTCAGACGGAATTTCGAAAGAAATATATTAGTCAA
CGGTTCATTGATCAAAAGCGTAAGGAATTCTTGGAACTCAAGCAAGGCCGTATGACAGTATCTGA
ATACGAACATGAATTCGTAAGGCTCAGTAGGTATGCCTGGGAGTGTGTAGCTGATGAGGTTGCTA
TGTGCAAAAGATTCGAAGAAGGATTGAATGAAGATTTAAAGCTACTAATAGGTATTTTGGAAATA
AAAGAATTCGTAACGATAGTCGAACGAGCC
Found at i:77590455 original size:39 final size:39
Alignment explanation
Indices: 77590411--77590535 Score: 196
Period size: 39 Copynumber: 3.2 Consensus size: 39
77590401 TATGAGATTG
*
77590411 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
*
77590450 AAAATATCCGGACATGAGGTTCGCAGGCTATATGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
* * **
77590489 AATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTAGA
1 AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
77590528 AAAATATC
1 AAAATATC
77590536 AGGGTTAAAG
Statistics
Matches: 78, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
39 78 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (39 bp):
AAAATATCCGGACATGAGGTCCGCAGGCTATATGCTAGA
Found at i:77590553 original size:78 final size:76
Alignment explanation
Indices: 77590410--77590564 Score: 168
Period size: 78 Copynumber: 2.0 Consensus size: 76
77590400 GTATGAGATT
* * * ***
77590410 GAAAATATCCGGACATGAGGTCCGCAGGCTATATGCTGGAAAAATATCCGGACATGAGGTTCGCA
1 GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCCGGACATAAGACCCGCA
*
77590475 GGCTATATGCTA
66 GGCT-TACGCTA
* * * **
77590487 GAAATATATCCGGACTTGAGGTCCGCAGGCTACGTGCTAGAAAAATATCAGG-GTTAAAGACCCG
1 GAAA-ATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCCGGACAT-AAGACCCG
77590551 CAGGCTTACGCTA
64 CAGGCTTACGCTA
77590564 G
1 G
77590565 TGATGTATTC
Statistics
Matches: 64, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
77 12 0.19
78 52 0.81
ACGTcount: A:0.31, C:0.21, G:0.27, T:0.21
Consensus pattern (76 bp):
GAAAATATCCGGACATGAGGTCCGCAGGCTACATGCTAGAAAAATATCCGGACATAAGACCCGCA
GGCTTACGCTA
Found at i:77603607 original size:94 final size:94
Alignment explanation
Indices: 77603366--77603637 Score: 308
Period size: 94 Copynumber: 2.9 Consensus size: 94
77603356 GGAGTAAGGT
* *
77603366 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGC--TCATATCTCAAGTCGATGCATTGTCCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATGT--GGTCGATGCA-TGTCCC
77603429 AGACATGGTCTTACACT-G-ACTATCATCTCGTA
63 AGACAT-GTCTTACACTAGCAC-ATCATCTCGTA
* * * * * *
77603461 GCCGATG-CATGTCCCAAACAT-GTCTTACAATGGCTTCCATCTCGAGGCCGATGCATGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATAT-GTGGTCGATGCATGTCCCAG
*
77603524 ACATGTCTTACACTAGCAC-TCGTCTCG-A
65 ACATGTCTTACACTAGCACATCATCTCGTA
* *
77603552 TGTCGATGCCATATCCCAGACATGGTCTTACACTGGCTTTCATAATGTGGTCGATGCATGTCCCA
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCAT-ATGTGGTCGATGCATGTCCCA
*
77603617 AACATGTCTTACACTAGCACA
64 GACATGTCTTACACTAGCACA
77603638 CAATAACCCC
Statistics
Matches: 149, Mismatches: 18, Indels: 20
0.80 0.10 0.11
Matches are distributed among these distances:
91 1 0.01
92 23 0.15
93 37 0.25
94 76 0.51
95 12 0.08
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (94 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTTCATATGTGGTCGATGCATGTCCCAGA
CATGTCTTACACTAGCACATCATCTCGTA
Found at i:77603626 original size:140 final size:141
Alignment explanation
Indices: 77603366--77603629 Score: 367
Period size: 140 Copynumber: 1.9 Consensus size: 141
77603356 GGAGTAAGGT
* * *
77603366 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCATTGTCCCAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGTCGATGCATTATCCCAG
*
77603431 ACATGGTCTTACACTGACTATCATCTCGTAGCCGATGCATGTCCCAAACATGTCTTACAATGGCT
66 ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACAATGGCT
77603496 TCCATCTCGAG
131 TCCATCTCGAG
* *
77603507 GCCGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCGTCTCGATGTCGATGCCA-TATCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACAT-ATCTC-AAGTCGATG-CATTATCC
* * * *
77603568 CAGACATGGTCTTACACTGGCTTTCATAAT-GTGGTCGATGCATGTCCCAAACATGTCTTACA
63 CAGACATGGTCTTACACTGACTATCAT-ATCGTAGCCGATGCATGTCCCAAACATGTCTTACA
77603630 CTAGCACACA
Statistics
Matches: 109, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 17 0.16
140 81 0.74
141 10 0.09
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.28
Consensus pattern (141 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGTCGATGCATTATCCCAG
ACATGGTCTTACACTGACTATCATATCGTAGCCGATGCATGTCCCAAACATGTCTTACAATGGCT
TCCATCTCGAG
Found at i:77608104 original size:56 final size:56
Alignment explanation
Indices: 77608019--77608179 Score: 175
Period size: 56 Copynumber: 2.9 Consensus size: 56
77608009 AGTCTACAAG
**
77608019 GACTATTC--CATGTAAGAGT-TCACATGGACTATCATTCAAACAAGAGTCTGCATA
1 GACTATTCTTCATGTAAGAGTCT-ACATGGACTATCATTCAAACAAGAGTCCCCATA
* * * *
77608073 GACTATTCTTCATGTTAGAGTCTACAAGGACTATCATTCCAACAAGAGTCCCCATG
1 GACTATTCTTCATGTAAGAGTCTACATGGACTATCATTCAAACAAGAGTCCCCATA
* * * * * **
77608129 GACTATCCTTCAGGCAAGAGTCCACATGGACTATCTTTCAAGTAAGAGTCC
1 GACTATTCTTCATGTAAGAGTCTACATGGACTATCATTCAAACAAGAGTCC
77608180 ACATGAACTA
Statistics
Matches: 88, Mismatches: 16, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
54 8 0.09
56 79 0.90
57 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (56 bp):
GACTATTCTTCATGTAAGAGTCTACATGGACTATCATTCAAACAAGAGTCCCCATA
Found at i:77608184 original size:28 final size:28
Alignment explanation
Indices: 77608032--77608189 Score: 131
Period size: 28 Copynumber: 5.6 Consensus size: 28
77608022 TATTCCATGT
* * *
77608032 AAGAGTTCACATGGACTATCATTCAAAC
1 AAGAGTCCACATGGACTATCTTTCAAGC
** * * *
77608060 AAGAGTCTGCATAGACTAT-TCTTCATGT
1 AAGAGTCCACATGGACTATCT-TTCAAGC
* * * *
77608088 TAGAGTCTACAAGGACTATCATTCCAA-C
1 AAGAGTCCACATGGACTATC-TTTCAAGC
* * *
77608116 AAGAGTCCCCATGGACTATCCTTCAGGC
1 AAGAGTCCACATGGACTATCTTTCAAGC
*
77608144 AAGAGTCCACATGGACTATCTTTCAAGT
1 AAGAGTCCACATGGACTATCTTTCAAGC
*
77608172 AAGAGTCCACATGAACTA
1 AAGAGTCCACATGGACTA
77608190 ATTAATGAGT
Statistics
Matches: 99, Mismatches: 27, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
27 3 0.03
28 92 0.93
29 3 0.03
30 1 0.01
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.26
Consensus pattern (28 bp):
AAGAGTCCACATGGACTATCTTTCAAGC
Found at i:77609170 original size:30 final size:31
Alignment explanation
Indices: 77609115--77609182 Score: 93
Period size: 30 Copynumber: 2.2 Consensus size: 31
77609105 GACCCCCAAA
*
77609115 AAGTTTAAGTACCAACTTAAGAAAAAGTGCC
1 AAGTTTAAGTACCAAATTAAGAAAAAGTGCC
* * *
77609146 GAGTTTAGGTACCAAATT-AGAAAAAGTGTC
1 AAGTTTAAGTACCAAATTAAGAAAAAGTGCC
77609176 AAGTTTA
1 AAGTTTA
77609183 CGTATCAGAT
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
30 17 0.53
31 15 0.47
ACGTcount: A:0.43, C:0.12, G:0.19, T:0.26
Consensus pattern (31 bp):
AAGTTTAAGTACCAAATTAAGAAAAAGTGCC
Found at i:77611484 original size:45 final size:47
Alignment explanation
Indices: 77611431--77611531 Score: 134
Period size: 49 Copynumber: 2.1 Consensus size: 47
77611421 TCTATATAGA
* * *
77611431 ACTACACTTCTTTTATTT-TATT-TTAGAATAAGGTTTTTTAACCTT
1 ACTACACTTCATCTATTTATATTATTAGAATAAGGTTTTTCAACCTT
*
77611476 ATTACACTTCATCTATTTGATATTGATTAGAATAAGGTTTTTCAACCTT
1 ACTACACTTCATCTATTT-ATATT-ATTAGAATAAGGTTTTTCAACCTT
77611525 ACTACAC
1 ACTACAC
77611532 CCCTTCTATT
Statistics
Matches: 47, Mismatches: 5, Indels: 4
0.84 0.09 0.07
Matches are distributed among these distances:
45 15 0.32
47 4 0.09
49 28 0.60
ACGTcount: A:0.30, C:0.16, G:0.08, T:0.47
Consensus pattern (47 bp):
ACTACACTTCATCTATTTATATTATTAGAATAAGGTTTTTCAACCTT
Found at i:77613294 original size:27 final size:27
Alignment explanation
Indices: 77613256--77613414 Score: 148
Period size: 27 Copynumber: 5.9 Consensus size: 27
77613246 GCGAGGCTGC
*
77613256 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGACAG-AGCCACCAGATA
77613283 CAGATATTGTGACAGAGCCACCAGA-A
1 CAGATATTGTGACAGAGCCACCAGATA
*
77613309 CAGATATATGTGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGACAGAGCCACCAGATA
* * *
77613336 CAGATAATTGTGGCACAGCCACCAG-GA
1 CAGAT-ATTGTGACAGAGCCACCAGATA
* *
77613363 CAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGACAGAGCCACCAGATA
* * *
77613390 CAGATAATTATGGCATAGCCACCAG
1 CAGAT-ATTGTGACAGAGCCACCAG
77613415 GACGCTTCCT
Statistics
Matches: 116, Mismatches: 8, Indels: 16
0.83 0.06 0.11
Matches are distributed among these distances:
26 10 0.09
27 101 0.87
28 5 0.04
ACGTcount: A:0.36, C:0.23, G:0.23, T:0.18
Consensus pattern (27 bp):
CAGATATTGTGACAGAGCCACCAGATA
Found at i:77613415 original size:54 final size:54
Alignment explanation
Indices: 77613274--77613417 Score: 218
Period size: 54 Copynumber: 2.7 Consensus size: 54
77613264 GTGACGAAGT
* * * *
77613274 CACCAGATACAGAT-ATTGTGACAGAGCCACCAGAACAGATATATGTGGCAGAGC
1 CACCAGAT-CAGATAATTGTGGCACAGCCACCAGGACAGATATATATGGCAGAGC
77613328 CACCAGATCAGATAATTGTGGCACAGCCACCAGGACAGATATATATGGCAGAGC
1 CACCAGATCAGATAATTGTGGCACAGCCACCAGGACAGATATATATGGCAGAGC
* *
77613382 CACCAGATCAGATAATTATGGCATAGCCACCAGGAC
1 CACCAGATCAGATAATTGTGGCACAGCCACCAGGAC
77613418 GCTTCCTCCA
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 5 0.06
54 78 0.94
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.17
Consensus pattern (54 bp):
CACCAGATCAGATAATTGTGGCACAGCCACCAGGACAGATATATATGGCAGAGC
Found at i:77615043 original size:26 final size:26
Alignment explanation
Indices: 77615012--77615093 Score: 146
Period size: 26 Copynumber: 3.2 Consensus size: 26
77615002 TGAAATGCCC
*
77615012 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
77615038 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
*
77615064 ATCATGGAATATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
77615090 ATCA
1 ATCA
77615094 ATTTGTACCA
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 54 1.00
ACGTcount: A:0.37, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:77619163 original size:23 final size:23
Alignment explanation
Indices: 77619128--77619175 Score: 78
Period size: 23 Copynumber: 2.1 Consensus size: 23
77619118 TGGTAAGGAG
**
77619128 TTAGCTTGTTGGAGGACCTGTGT
1 TTAGCTTACTGGAGGACCTGTGT
77619151 TTAGCTTACTGGAGGACCTGTGT
1 TTAGCTTACTGGAGGACCTGTGT
77619174 TT
1 TT
77619176 GAATTCCCGC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.15, C:0.15, G:0.31, T:0.40
Consensus pattern (23 bp):
TTAGCTTACTGGAGGACCTGTGT
Found at i:77621682 original size:17 final size:18
Alignment explanation
Indices: 77621660--77621694 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
77621650 CTGAATGTAC
77621660 TTTTCATATACA-CATAT
1 TTTTCATATACATCATAT
*
77621677 TTTTCATTTACATCATAT
1 TTTTCATATACATCATAT
77621695 ATGAATTGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.31, C:0.17, G:0.00, T:0.51
Consensus pattern (18 bp):
TTTTCATATACATCATAT
Found at i:77629335 original size:41 final size:43
Alignment explanation
Indices: 77629232--77629335 Score: 108
Period size: 41 Copynumber: 2.5 Consensus size: 43
77629222 CAATGTTTAC
* * * *
77629232 GTCCCAGACGTGGTCTTACATGCTATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGCAATCAAATATCGATACCACT
* *
77629275 ATCCCAGACA-GAGTATTACACG-AATCAAATA-CGATACCGA-T
1 GTCCCAGACATG-GTCTTACACGCAATCAAATATCGATACC-ACT
77629316 GTCCCAGACATGGTCTTACA
1 GTCCCAGACATGGTCTTACA
77629336 TGTAGCCACA
Statistics
Matches: 50, Mismatches: 8, Indels: 8
0.76 0.12 0.12
Matches are distributed among these distances:
41 23 0.46
42 11 0.22
43 16 0.32
ACGTcount: A:0.32, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
GTCCCAGACATGGTCTTACACGCAATCAAATATCGATACCACT
Found at i:77635355 original size:31 final size:31
Alignment explanation
Indices: 77635311--77635381 Score: 99
Period size: 31 Copynumber: 2.2 Consensus size: 31
77635301 AAAATTTAAT
77635311 TGTATACAACTGAACCACAATCAAAGTTT-TA
1 TGTATA-AACTGAACCACAATCAAAGTTTATA
*
77635342 TGTATAAATCTGAACTACAATCAAAGTTTCATA
1 TGTATAAA-CTGAACCACAATCAAAGTTT-ATA
77635375 TGTATAA
1 TGTATAA
77635382 TTGGACCAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 4
0.88 0.02 0.10
Matches are distributed among these distances:
30 2 0.06
31 25 0.69
33 9 0.25
ACGTcount: A:0.42, C:0.15, G:0.10, T:0.32
Consensus pattern (31 bp):
TGTATAAACTGAACCACAATCAAAGTTTATA
Found at i:77636323 original size:18 final size:18
Alignment explanation
Indices: 77636284--77636342 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
77636274 ACCACAGGTG
77636284 AAAAA-GATAATATCT-TT
1 AAAAATGATAATAT-TATT
*
77636301 TAAAATGATAATATTATT
1 AAAAATGATAATATTATT
* *
77636319 AAAAATAATAATTTTATT
1 AAAAATGATAATATTATT
77636337 AAAAAT
1 AAAAAT
77636343 AATTTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
17 5 0.14
18 31 0.86
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.39
Consensus pattern (18 bp):
AAAAATGATAATATTATT
Found at i:77636328 original size:15 final size:16
Alignment explanation
Indices: 77636285--77636351 Score: 57
Period size: 18 Copynumber: 4.0 Consensus size: 16
77636275 CCACAGGTGA
*
77636285 AAAAGATAATATCTTTT
1 AAAAGATAATAT-TATT
77636302 AAAATGATAATATTATT
1 AAAA-GATAATATTATT
77636319 AAAA-ATAATAATTTTATT
1 AAAAGATAAT-A--TTATT
*
77636337 AAAA-ATAATTTTATT
1 AAAAGATAATATTATT
77636352 TTGAAATAAA
Statistics
Matches: 44, Mismatches: 2, Indels: 10
0.79 0.04 0.18
Matches are distributed among these distances:
15 10 0.23
16 1 0.02
17 11 0.25
18 22 0.50
ACGTcount: A:0.52, C:0.01, G:0.03, T:0.43
Consensus pattern (16 bp):
AAAAGATAATATTATT
Found at i:77636343 original size:18 final size:18
Alignment explanation
Indices: 77636302--77636345 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
77636292 AATATCTTTT
*
77636302 AAAATGATAATATTATTA
1 AAAATAATAATATTATTA
*
77636320 AAAATAATAATTTTATTA
1 AAAATAATAATATTATTA
77636338 AAAATAAT
1 AAAATAAT
77636346 TTTATTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.59, C:0.00, G:0.02, T:0.39
Consensus pattern (18 bp):
AAAATAATAATATTATTA
Found at i:77636504 original size:35 final size:35
Alignment explanation
Indices: 77636465--77636604 Score: 280
Period size: 35 Copynumber: 4.0 Consensus size: 35
77636455 TATTGAGCTG
77636465 GTAGCTTTTTACACGTATATATCAATTAAAATATA
1 GTAGCTTTTTACACGTATATATCAATTAAAATATA
77636500 GTAGCTTTTTACACGTATATATCAATTAAAATATA
1 GTAGCTTTTTACACGTATATATCAATTAAAATATA
77636535 GTAGCTTTTTACACGTATATATCAATTAAAATATA
1 GTAGCTTTTTACACGTATATATCAATTAAAATATA
77636570 GTAGCTTTTTACACGTATATATCAATTAAAATATA
1 GTAGCTTTTTACACGTATATATCAATTAAAATATA
77636605 ATATACTTAT
Statistics
Matches: 105, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 105 1.00
ACGTcount: A:0.40, C:0.11, G:0.09, T:0.40
Consensus pattern (35 bp):
GTAGCTTTTTACACGTATATATCAATTAAAATATA
Found at i:77639315 original size:15 final size:16
Alignment explanation
Indices: 77639297--77639326 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77639287 AATTGTTTTA
77639297 TTACA-AATTTCACTC
1 TTACATAATTTCACTC
77639312 TTACATAATTTCACT
1 TTACATAATTTCACT
77639327 TACTCCATTC
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.33, C:0.23, G:0.00, T:0.43
Consensus pattern (16 bp):
TTACATAATTTCACTC
Found at i:77639654 original size:50 final size:50
Alignment explanation
Indices: 77639536--77639815 Score: 240
Period size: 50 Copynumber: 5.6 Consensus size: 50
77639526 ATTCGGTACG
* * * * ***
77639536 CATAGTAGCCTGTACTTAGTACTACACATGCGACC-AACAATCCGGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACA
** * *
77639585 TGTAGTACCCTGCACTTAGTACTACACACGTGGCCTAACCATCTAATACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACA
* * * *** *** *
77639635 CATAGTAGCATGCACTTAGTACTACACACGTGATCAAAGTTGTCGGGTACG
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAA-CCATCTAATACA
* * * * *
77639686 CATAGTAGCCTGCACTTAGTACTACATATGCGACCTAACTATCTAGTACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACA
* * *
77639736 CGTAGTAACCTGCACTTAGTACTACACATGTGACCTAAAACCATCTTAA-ACA
1 CATAGTAGCCTGCACTTAGTACTACACACGTGACCT--AACCATC-TAATACA
*
77639788 CATAGTAGCCTGCACATAGTACTACACA
1 CATAGTAGCCTGCACTTAGTACTACACA
77639816 TGTGTTCTCA
Statistics
Matches: 181, Mismatches: 45, Indels: 7
0.78 0.19 0.03
Matches are distributed among these distances:
49 28 0.15
50 80 0.44
51 37 0.20
52 34 0.19
53 2 0.01
ACGTcount: A:0.33, C:0.27, G:0.16, T:0.25
Consensus pattern (50 bp):
CATAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTAATACA
Found at i:77639709 original size:101 final size:101
Alignment explanation
Indices: 77639587--77639768 Score: 265
Period size: 101 Copynumber: 1.8 Consensus size: 101
77639577 CCGGTACATG
* * *
77639587 TAGTACCCTGCACTTAGTACTACACACGTGGCCTAACCATCTAATACACATAGTAGCATGCACTT
1 TAGTACCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACATAGTAACATGCACTT
77639652 AGTACTACACACGTGATCAAAGTTGTCGGGTACGCA
66 AGTACTACACACGTGATCAAAGTTGTCGGGTACGCA
* * * * * * *
77639688 TAGTAGCCTGCACTTAGTACTACATATGCGACCTAACTATCTAGTACACGTAGTAACCTGCACTT
1 TAGTACCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACATAGTAACATGCACTT
*
77639753 AGTACTACACATGTGA
66 AGTACTACACACGTGA
77639769 CCTAAAACCA
Statistics
Matches: 70, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
101 70 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (101 bp):
TAGTACCCTGCACTTAGTACTACACACGCGACCTAACCATCTAATACACATAGTAACATGCACTT
AGTACTACACACGTGATCAAAGTTGTCGGGTACGCA
Found at i:77644353 original size:12 final size:14
Alignment explanation
Indices: 77644336--77644367 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
77644326 AACTCATATT
77644336 TTAAAAT-A-AAAA
1 TTAAAATAACAAAA
77644348 TTAAAATAACAAAA
1 TTAAAATAACAAAA
77644362 TTAAAA
1 TTAAAA
77644368 ATACCACCCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
12 7 0.39
13 1 0.06
14 10 0.56
ACGTcount: A:0.72, C:0.03, G:0.00, T:0.25
Consensus pattern (14 bp):
TTAAAATAACAAAA
Found at i:77647676 original size:47 final size:48
Alignment explanation
Indices: 77647619--77647728 Score: 152
Period size: 49 Copynumber: 2.3 Consensus size: 48
77647609 GCCATATCCT
* *
77647619 AGACATGGTCTTACACTGACTCATC-CATCAAG-TCGATGCCAAGTCCC
1 AGACATGGTCTTACACTGACT-ATCAAATCAAGACCGATGCCAAGTCCC
* *
77647666 AGACATGGTCTTACACTGACTATCAAAATCGAGACCGATGCCATGTCCC
1 AGACATGGTCTTACACTGACTATC-AAATCAAGACCGATGCCAAGTCCC
77647715 AGACATGGTCTTAC
1 AGACATGGTCTTAC
77647729 GCTAGCTCTC
Statistics
Matches: 56, Mismatches: 4, Indels: 4
0.88 0.06 0.06
Matches are distributed among these distances:
46 3 0.05
47 21 0.38
48 5 0.09
49 27 0.48
ACGTcount: A:0.29, C:0.29, G:0.18, T:0.24
Consensus pattern (48 bp):
AGACATGGTCTTACACTGACTATCAAATCAAGACCGATGCCAAGTCCC
Found at i:77647835 original size:46 final size:48
Alignment explanation
Indices: 77647601--77647921 Score: 220
Period size: 46 Copynumber: 6.8 Consensus size: 48
77647591 ATAGGGTATA
* * *
77647601 ATGCCAATGCCATATCCTAGACATGGTCTTACACT-GAC-T-CATC-CAT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTTACATCTC-T
* * * ** *
77647647 CAAGTCGATGCCAAGTCCCAGACATGGTCTTACACT-GAC-TATCAAAATCG
1 -ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG-CTTA-C-ATCTCT
* *
77647697 A-GACCGATGCCATGTCCCAGACATGGTCTTACGCTAGCTCTCACATATCT
1 ATG-CCGATGCCATGTCCCAGACATGGTCTTACACTAGCT-T-ACATCTCT
* ** * *
77647747 ATGCCGATGCCATGTCCTAGTTATGGTCTTAAACTAAC--ACATCTCGT
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTC-T
* *
77647794 A-GCCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTTACATCTCG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCT
* * * * * * *
77647839 AGGCCGATG-CATGTCCAAGAAAT-GTCTTACACTAGCTTTCGTTTCA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCT
*
77647885 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTAG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAG
77647922 TGCACAAATA
Statistics
Matches: 222, Mismatches: 36, Indels: 31
0.77 0.12 0.11
Matches are distributed among these distances:
44 11 0.05
45 13 0.06
46 65 0.29
47 47 0.21
48 13 0.06
49 32 0.14
50 36 0.16
51 4 0.02
52 1 0.00
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTACATCTCT
Found at i:77652958 original size:2 final size:2
Alignment explanation
Indices: 77652953--77652978 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
77652943 TAAATATATA
77652953 TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG
77652979 AATGAGATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:77653152 original size:15 final size:15
Alignment explanation
Indices: 77653134--77653190 Score: 80
Period size: 15 Copynumber: 3.9 Consensus size: 15
77653124 TATCTGTTTT
77653134 ATTGAATTTATATTG
1 ATTGAATTTATATTG
* *
77653149 ATTGAAATTATTTTG
1 ATTGAATTTATATTG
77653164 ATTGAATTTATATTG
1 ATTGAATTTATATTG
*
77653179 ATGGAA-TTATAT
1 ATTGAATTTATAT
77653191 AATATATATG
Statistics
Matches: 37, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 6 0.16
15 31 0.84
ACGTcount: A:0.35, C:0.00, G:0.14, T:0.51
Consensus pattern (15 bp):
ATTGAATTTATATTG
Found at i:77653169 original size:30 final size:28
Alignment explanation
Indices: 77653105--77653188 Score: 91
Period size: 30 Copynumber: 2.9 Consensus size: 28
77653095 GATAAGTTTA
* *
77653105 TATTGAATTGAT-TT-ATGAATATCTGTTT
1 TATTGAATTTATATTGATGAA-AT-TATTT
77653133 TATTGAATTTATATTGATTGAAATTATTT
1 TATTGAATTTATATTGA-TGAAATTATTT
*
77653162 TGATTGAATTTATATTGATGGAATTAT
1 T-ATTGAATTTATATTGATGAAATTAT
77653189 ATAATATATA
Statistics
Matches: 49, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
28 11 0.22
29 15 0.31
30 19 0.39
31 4 0.08
ACGTcount: A:0.32, C:0.01, G:0.14, T:0.52
Consensus pattern (28 bp):
TATTGAATTTATATTGATGAAATTATTT
Found at i:77653611 original size:20 final size:20
Alignment explanation
Indices: 77653586--77653623 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
77653576 GTGTCGTATT
*
77653586 TCAGGCACCTCGTGTGTCTA
1 TCAGGCACATCGTGTGTCTA
77653606 TCAGGCACATCGTGTGTC
1 TCAGGCACATCGTGTGTC
77653624 GTTTTAGGCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.16, C:0.29, G:0.26, T:0.29
Consensus pattern (20 bp):
TCAGGCACATCGTGTGTCTA
Found at i:77656438 original size:102 final size:101
Alignment explanation
Indices: 77656288--77656567 Score: 305
Period size: 101 Copynumber: 2.7 Consensus size: 101
77656278 CTTTTTGGCC
* * * *
77656288 AAGTATTGATATTTTTTTGAATTATCGATA-CCCTCTCTTAAAAATGATACCAAAGTGGCATTAT
1 AAGTATTGATA-ATTTTTGAATTATTGATACCCCT-TCTT-AAAATGATACCAAAATGACATTAT
* * *
77656352 GTTTTCACAAACCCTAATAAGTGTCGATACCTTTTGATT
63 GTTTTCACAAACCCTAATAAGTATCAATACCATTTGATT
* * * *
77656391 AAGTATTGATAATTTTTGAAATATTAATACCCCTTCTTAAAAGTGATATCAAAATGACATTTTGT
1 AAGTATTGATAATTTTTGAATTATTGATACCCCTTCTTAAAA-TGATACCAAAATGACATTATGT
* *
77656456 TTT-TCAAACCCTAATAATTATCAATACCATTTGATT
65 TTTCACAAACCCTAATAAGTATCAATACCATTTGATT
* ** * *
77656492 ATGTATCAAT-ATTTTCTGAATTATTGATACCCCTTCTTAAATATGATACTAAAAATAACATTAT
1 AAGTATTGATAATTTT-TGAATTATTGATACCCCTTCTTAAA-ATGATAC-CAAAATGACATTAT
77656556 GTTTCTCACAAA
63 GTTT-TCACAAA
77656568 ACTTACAAAG
Statistics
Matches: 147, Mismatches: 23, Indels: 13
0.80 0.13 0.07
Matches are distributed among these distances:
100 5 0.03
101 67 0.46
102 55 0.37
103 16 0.11
104 4 0.03
ACGTcount: A:0.36, C:0.15, G:0.09, T:0.40
Consensus pattern (101 bp):
AAGTATTGATAATTTTTGAATTATTGATACCCCTTCTTAAAATGATACCAAAATGACATTATGTT
TTCACAAACCCTAATAAGTATCAATACCATTTGATT
Found at i:77657854 original size:19 final size:19
Alignment explanation
Indices: 77657826--77657869 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
77657816 TTATTTTTAA
77657826 TTTA-ATATTTAAT-AATT
1 TTTATATATTTAATAAATT
*
77657843 TTATATATATTTATTAAATT
1 TT-TATATATTTAATAAATT
77657863 TTTATAT
1 TTTATAT
77657870 TTAGTTATCT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
17 2 0.09
18 2 0.09
19 13 0.57
20 6 0.26
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
TTTATATATTTAATAAATT
Found at i:77657857 original size:23 final size:23
Alignment explanation
Indices: 77657831--77657929 Score: 66
Period size: 21 Copynumber: 4.3 Consensus size: 23
77657821 TTTAATTTAA
77657831 TATTTAATAATTTTATATATATT
1 TATTTAATAATTTTATATATATT
* * *
77657854 TA-TTAA-ATTTTTATATTTAGT
1 TATTTAATAATTTTATATATATT
*
77657875 TATCTTAAT-ATTTT-TA-ATTTT
1 TAT-TTAATAATTTTATATATATT
*
77657896 TATATTATAGTAATATTATATATTATT
1 TAT-TTA-A-TAATTTTATATA-TATT
77657923 T-TTTAAT
1 TATTTAAT
77657930 TTTTATGTAT
Statistics
Matches: 57, Mismatches: 10, Indels: 18
0.67 0.12 0.21
Matches are distributed among these distances:
21 22 0.39
22 7 0.12
23 12 0.21
24 5 0.09
25 5 0.09
26 2 0.04
27 4 0.07
ACGTcount: A:0.35, C:0.01, G:0.02, T:0.62
Consensus pattern (23 bp):
TATTTAATAATTTTATATATATT
Found at i:77657870 original size:36 final size:34
Alignment explanation
Indices: 77657810--77657935 Score: 127
Period size: 32 Copynumber: 3.7 Consensus size: 34
77657800 TTTCACATTA
* *
77657810 TTTATAT-TATTTTTAA-TTTAATATTTAATAAT
1 TTTATATATATTTTTAATTTTTATATTTAGTAAT
*
77657842 TTTATATATATTTATTAAATTTTTATATTTAGTTA-
1 TTTATATATATTT-TT-AATTTTTATATTTAGTAAT
*
77657877 TCT-TA-ATATTTTTAATTTTTATATTATAGTAAT
1 TTTATATATATTTTTAATTTTTATATT-TAGTAAT
*
77657910 ATTATATATTATTTTTTAATTTTTAT
1 TTTATATA-TA-TTTTTAATTTTTAT
77657936 GTATTATAAA
Statistics
Matches: 77, Mismatches: 7, Indels: 15
0.78 0.07 0.15
Matches are distributed among these distances:
31 12 0.16
32 14 0.18
33 12 0.16
34 6 0.08
35 5 0.06
36 14 0.18
37 14 0.18
ACGTcount: A:0.34, C:0.01, G:0.02, T:0.63
Consensus pattern (34 bp):
TTTATATATATTTTTAATTTTTATATTTAGTAAT
Found at i:77657877 original size:21 final size:23
Alignment explanation
Indices: 77657817--77657894 Score: 67
Period size: 21 Copynumber: 3.6 Consensus size: 23
77657807 TTATTTATAT
* *
77657817 TATTTTTA-ATTTA-ATATTTAA
1 TATTTTTATATTTAGTTACTTAA
* * *
77657838 TAATTTTATATATATTTA-TTAA
1 TATTTTTATATTTAGTTACTTAA
77657860 -ATTTTTATATTTAGTTATCTTAA
1 TATTTTTATATTTAGTTA-CTTAA
77657883 TATTTTTA-ATTT
1 TATTTTTATATTT
77657895 TTATATTATA
Statistics
Matches: 46, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
21 21 0.46
22 8 0.17
23 10 0.22
24 7 0.15
ACGTcount: A:0.35, C:0.01, G:0.01, T:0.63
Consensus pattern (23 bp):
TATTTTTATATTTAGTTACTTAA
Found at i:77669716 original size:42 final size:42
Alignment explanation
Indices: 77669670--77669791 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
77669660 TACCATACCA
* * * *
77669670 ATGCCATATCTCAGATATGGTCTTACATG-GGATCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATCG
* * *
77669712 ATGCCAATAGCCCAGCTATAGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
77669755 ATGCCATATCCCAGATATGGTCTTACACGTAA-TCTCA
1 ATGCCATATCCCAGATATGGTCTTACACG-AAGTCTCA
77669792 ACTAACCCTA
Statistics
Matches: 67, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
42 31 0.46
43 35 0.52
44 1 0.01
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATCG
Found at i:77676662 original size:49 final size:50
Alignment explanation
Indices: 77676586--77676716 Score: 144
Period size: 50 Copynumber: 2.7 Consensus size: 50
77676576 GTATTATTCC
*
77676586 GATGCCATGTCCCA-ACATGGTTTTACACTGACTATCA-AAATC-GAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCTG-GGCT
* * * * *
77676634 GATGTCATGTCCCAGAGATGGTCTTACACT-AGCTCTCACATATCTGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATCTGGGCT
* *
77676684 GATGCCATGTCCCAGACAGGGTCTTATACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
77676717 ACATCTTATA
Statistics
Matches: 68, Mismatches: 10, Indels: 8
0.79 0.12 0.09
Matches are distributed among these distances:
48 14 0.21
49 18 0.26
50 34 0.50
51 2 0.03
ACGTcount: A:0.25, C:0.26, G:0.21, T:0.28
Consensus pattern (50 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCTGGGCT
Found at i:77676789 original size:46 final size:46
Alignment explanation
Indices: 77676727--77676897 Score: 182
Period size: 46 Copynumber: 3.7 Consensus size: 46
77676717 ACATCTTATA
77676727 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAG
* * * * * * * *
77676773 GCCGATGTATATCCCAGACATGTCTCACACTAGCTTATGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAG
* * * * * *
77676819 GCCAATGCCATGTCCTAGACATGGTCTTACACTGGCTCT-CATAATGTG
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACGTCACGAG
77676867 GCCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
77676898 AGCACACAAA
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 54 0.55
47 24 0.24
48 19 0.19
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCACGAG
Found at i:77691798 original size:79 final size:81
Alignment explanation
Indices: 77691662--77691846 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 81
77691652 TTGAATGATG
*
77691662 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
77691726 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * * **
77691741 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
77691803 TTTGTGCGAATTACTATA
64 TTTGTGCGAATTACTATA
* *
77691821 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
77691847 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 8, Indels: 10
0.84 0.07 0.09
Matches are distributed among these distances:
78 2 0.02
79 57 0.62
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:77691860 original size:40 final size:39
Alignment explanation
Indices: 77691663--77691846 Score: 189
Period size: 40 Copynumber: 4.6 Consensus size: 39
77691653 TGAATGATGT
* * *
77691663 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGT-ACTATAA
* *
77691703 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAG-TACTATA-A
77691743 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAG-TACTATAA
* *
77691781 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCG-AGTACTATAA
*
77691822 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
77691847 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 18
0.82 0.07 0.12
Matches are distributed among these distances:
39 35 0.28
40 78 0.62
41 12 0.10
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTACTATAA
Found at i:77691868 original size:79 final size:79
Alignment explanation
Indices: 77691663--77691879 Score: 194
Period size: 79 Copynumber: 2.7 Consensus size: 79
77691653 TGAATGATGT
** * * * **
77691663 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
77691726 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
77691743 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
77691808 GCGA-ATTACT-ATAA
66 GCGAGA-TACTAAT-A
* * *
77691822 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
77691880 TACGTGATTT
Statistics
Matches: 116, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
78 4 0.03
79 70 0.60
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:77702814 original size:20 final size:20
Alignment explanation
Indices: 77702786--77702829 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
77702776 TACCAACTTG
*
77702786 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
77702806 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
77702826 CAAC
1 CAAC
77702830 TTAAACATTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:77703036 original size:42 final size:41
Alignment explanation
Indices: 77702915--77703036 Score: 111
Period size: 43 Copynumber: 2.9 Consensus size: 41
77702905 TACCATACCA
* * **
77702915 ATGCCATATCTCAGATATAGTCTTACATGGGATCTCATATTG
1 ATGCCATATCCCAGATATAGTCTTACAT-GAATCTCATATCC
* * *
77702957 ATGCCA-ATTGCCCAGTTATTGTTTTACATGAAGTCTCATATCC
1 ATGCCATA-T-CCCAGATATAGTCTTACATGAA-TCTCATATCC
* *
77703000 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATAGTCTTACATG-AATCTCA
77703037 ACTAACCCTA
Statistics
Matches: 64, Mismatches: 11, Indels: 10
0.75 0.13 0.12
Matches are distributed among these distances:
41 1 0.02
42 30 0.47
43 32 0.50
44 1 0.02
ACGTcount: A:0.28, C:0.23, G:0.15, T:0.34
Consensus pattern (41 bp):
ATGCCATATCCCAGATATAGTCTTACATGAATCTCATATCC
Found at i:77705620 original size:17 final size:17
Alignment explanation
Indices: 77705598--77705632 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
77705588 CCAAAATGAC
77705598 CATAAATCCTATACATG
1 CATAAATCCTATACATG
*
77705615 CATAAATCTTATACATG
1 CATAAATCCTATACATG
77705632 C
1 C
77705633 CATATAACCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.40, C:0.23, G:0.06, T:0.31
Consensus pattern (17 bp):
CATAAATCCTATACATG
Found at i:77717022 original size:8 final size:8
Alignment explanation
Indices: 77717001--77717034 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
77716991 TACTTATTAA
77717001 ATAATAA-
1 ATAATAAT
77717008 ATAATAAT
1 ATAATAAT
*
77717016 TTAATAAT
1 ATAATAAT
77717024 ATAATAAT
1 ATAATAAT
77717032 ATA
1 ATA
77717035 TATGTTATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
7 7 0.29
8 17 0.71
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATAATAAT
Found at i:77717079 original size:19 final size:19
Alignment explanation
Indices: 77717055--77717092 Score: 60
Period size: 18 Copynumber: 2.0 Consensus size: 19
77717045 TAAAGTAATT
77717055 AAATAAAAGAAATA-AAAGA
1 AAAT-AAAGAAATAGAAAGA
77717074 AAATAAAGAAATAGAAAGA
1 AAATAAAGAAATAGAAAGA
77717093 GGATAGAAGG
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (19 bp):
AAATAAAGAAATAGAAAGA
Found at i:77717091 original size:10 final size:9
Alignment explanation
Indices: 77717055--77717092 Score: 51
Period size: 9 Copynumber: 4.1 Consensus size: 9
77717045 TAAAGTAATT
77717055 AAATAAAAG
1 AAATAAAAG
77717064 AAATAAAAG
1 AAATAAAAG
77717073 AAA-ATAAAG
1 AAATA-AAAG
77717082 AAATAGAAAG
1 AAATA-AAAG
77717092 A
1 A
77717093 GGATAGAAGG
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
8 1 0.04
9 19 0.73
10 6 0.23
ACGTcount: A:0.76, C:0.00, G:0.13, T:0.11
Consensus pattern (9 bp):
AAATAAAAG
Found at i:77718197 original size:21 final size:20
Alignment explanation
Indices: 77718173--77718214 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
77718163 TACGATGTTG
77718173 AAAGACATTAAA-TGATATGTA
1 AAAGACA-TAAATTGA-ATGTA
*
77718194 AAAGATATAAATTGAATGTA
1 AAAGACATAAATTGAATGTA
77718214 A
1 A
77718215 GAGATGAAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.55, C:0.02, G:0.14, T:0.29
Consensus pattern (20 bp):
AAAGACATAAATTGAATGTA
Found at i:77722874 original size:18 final size:17
Alignment explanation
Indices: 77722847--77722881 Score: 61
Period size: 18 Copynumber: 2.0 Consensus size: 17
77722837 ATTTGGGGCT
77722847 AGAGAAAAAGAAGAAGA
1 AGAGAAAAAGAAGAAGA
77722864 AGAGAAAAAAGAAGAAGA
1 AGAG-AAAAAGAAGAAGA
77722882 GGAAGAAGAG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.71, C:0.00, G:0.29, T:0.00
Consensus pattern (17 bp):
AGAGAAAAAGAAGAAGA
Found at i:77722877 original size:15 final size:15
Alignment explanation
Indices: 77722847--77722896 Score: 55
Period size: 15 Copynumber: 3.2 Consensus size: 15
77722837 ATTTGGGGCT
77722847 AGAGAAAAAGAAGAAGA
1 AGAG-AAAA-AAGAAGA
77722864 AGAGAAAAAAGAAGA
1 AGAGAAAAAAGAAGA
* * *
77722879 AGAGGAAGAAGAGGA
1 AGAGAAAAAAGAAGA
77722894 AGA
1 AGA
77722897 TGCCTAAAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
15 22 0.73
16 4 0.13
17 4 0.13
ACGTcount: A:0.66, C:0.00, G:0.34, T:0.00
Consensus pattern (15 bp):
AGAGAAAAAAGAAGA
Found at i:77723254 original size:36 final size:36
Alignment explanation
Indices: 77723214--77723352 Score: 181
Period size: 36 Copynumber: 3.9 Consensus size: 36
77723204 CTAAAAACCA
* * *
77723214 GCTTATGTTTTGTA-ATATTGTTGTTGGTATACTGTT
1 GCTTATGTTTT-TATACATGGTTGTTGGTATATTGTT
*
77723250 GCTTATGTTGTTATACATGGTTGTTGGTATATTGTT
1 GCTTATGTTTTTATACATGGTTGTTGGTATATTGTT
* *
77723286 GCTTATGTTTTTATACATGGCTGCTGGTATATTGTT
1 GCTTATGTTTTTATACATGGTTGTTGGTATATTGTT
* * *
77723322 GCTTATGTTGTTATACATGGCTGCTGGTATA
1 GCTTATGTTTTTATACATGGTTGTTGGTATA
77723353 CATGGCTAAC
Statistics
Matches: 94, Mismatches: 8, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
35 2 0.02
36 92 0.98
ACGTcount: A:0.17, C:0.09, G:0.24, T:0.50
Consensus pattern (36 bp):
GCTTATGTTTTTATACATGGTTGTTGGTATATTGTT
Found at i:77723264 original size:20 final size:20
Alignment explanation
Indices: 77723235--77723294 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
77723225 GTAATATTGT
77723235 TGTTGGTATACTGTTGCTTA
1 TGTTGGTATACTGTTGCTTA
*
77723255 TGTTGTTATACATG--G--T-
1 TGTTGGTATAC-TGTTGCTTA
*
77723271 TGTTGGTATATTGTTGCTTA
1 TGTTGGTATACTGTTGCTTA
77723291 TGTT
1 TGTT
77723295 TTTATACATG
Statistics
Matches: 31, Mismatches: 3, Indels: 12
0.67 0.07 0.26
Matches are distributed among these distances:
15 2 0.06
16 9 0.29
17 2 0.06
19 2 0.06
20 14 0.45
21 2 0.06
ACGTcount: A:0.15, C:0.07, G:0.25, T:0.53
Consensus pattern (20 bp):
TGTTGGTATACTGTTGCTTA
Found at i:77723601 original size:23 final size:24
Alignment explanation
Indices: 77723556--77723601 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 24
77723546 AAAAATAGAA
* *
77723556 ACATTTGTATTTCTTAATTCTCAC
1 ACATTTGTATTTCTCAATACTCAC
77723580 ACATTTGT-TTTCTCAATACTCA
1 ACATTTGTATTTCTCAATACTCA
77723602 TATGTTAGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
23 12 0.60
24 8 0.40
ACGTcount: A:0.26, C:0.22, G:0.04, T:0.48
Consensus pattern (24 bp):
ACATTTGTATTTCTCAATACTCAC
Found at i:77724904 original size:2 final size:2
Alignment explanation
Indices: 77724899--77725824 Score: 1809
Period size: 2 Copynumber: 463.5 Consensus size: 2
77724889 CACCAACAAT
77724899 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77724941 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77724983 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725025 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725067 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725109 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725151 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725193 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725235 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725277 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725319 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725361 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725403 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725445 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725487 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725529 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725571 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725613 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725655 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725697 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725739 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
* * * *
77725781 CA CA AA CA CA CA CA CA C- CC CC CC CA CA CA CA CA CA CA CA CA
1 CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA CA
77725822 CA C
1 CA C
77725825 CTAAAAAATA
Statistics
Matches: 920, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
1 1 0.00
2 919 1.00
ACGTcount: A:0.50, C:0.50, G:0.00, T:0.00
Consensus pattern (2 bp):
CA
Found at i:77727797 original size:62 final size:62
Alignment explanation
Indices: 77727720--77727857 Score: 222
Period size: 62 Copynumber: 2.2 Consensus size: 62
77727710 CCATTTCTGT
*
77727720 CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACCATTTCTGTCACGCACATGG
1 CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACCATTTCTGTCACGCACATGA
* * * *
77727782 CAGACAACAACCAATACAAAAATAATTTAATACAAGCACAACCATTTTTGTCATGCACATGA
1 CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACCATTTCTGTCACGCACATGA
*
77727844 CAGATAATAACCAA
1 CAGACAATAACCAA
77727858 ACACTTTAAC
Statistics
Matches: 69, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
62 69 1.00
ACGTcount: A:0.48, C:0.23, G:0.08, T:0.21
Consensus pattern (62 bp):
CAGACAATAACCAATACAAAAATAATTTAATACAAACACAACCATTTCTGTCACGCACATGA
Found at i:77728179 original size:6 final size:6
Alignment explanation
Indices: 77728170--77728245 Score: 98
Period size: 6 Copynumber: 12.7 Consensus size: 6
77728160 AAATAATCCT
* * * *
77728170 AAATCG AAATCG AAATCG AAATCA AAATCA AAATTA AAATCA AAATCA
1 AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA AAATCA
**
77728218 AAATCA AAATCA AAATTG AAATCA AAAT
1 AAATCA AAATCA AAATCA AAATCA AAAT
77728246 AACCCTAAAT
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
6 63 1.00
ACGTcount: A:0.62, C:0.13, G:0.05, T:0.20
Consensus pattern (6 bp):
AAATCA
Found at i:77728976 original size:48 final size:49
Alignment explanation
Indices: 77728913--77729005 Score: 154
Period size: 48 Copynumber: 1.9 Consensus size: 49
77728903 AACTTAATAA
77728913 AAAAATAATAAATAATTTAATCA-TA-TTTTAATATAATTATTATTTAAT
1 AAAAATAATAAATAATTTAAT-AGTATTTTTAATATAATTATTATTTAAT
*
77728961 AAAAATAATATATAATTTAATAGTATTTTTAATATAATTATTATT
1 AAAAATAATAAATAATTTAATAGTATTTTTAATATAATTATTATT
77729006 ATATTAAATT
Statistics
Matches: 42, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
47 1 0.02
48 22 0.52
49 19 0.45
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (49 bp):
AAAAATAATAAATAATTTAATAGTATTTTTAATATAATTATTATTTAAT
Found at i:77732977 original size:84 final size:85
Alignment explanation
Indices: 77732850--77733019 Score: 272
Period size: 84 Copynumber: 2.0 Consensus size: 85
77732840 ATTTCTGCTA
*
77732850 TTTGAGCTTAGGTTCAACACAAGCTCAACGAATGCAAACCAGCTGACATCAGTATCTAGTGATGT
1 TTTGAGCTTAGGTT-AACACAAGCTCAACGAATGCAAACCAGCTGACATCAATATCTAGTGATGT
77732915 ATACTCATCATGATTTTTCGG
65 ATACTCATCATGATTTTTCGG
*
77732936 TTTGAGCTTAGG-T-ACACAAGCTCCACGACATGCAAACCAGCTGACATCAATATCTAGTGATGT
1 TTTGAGCTTAGGTTAACACAAGCTCAACGA-ATGCAAACCAGCTGACATCAATATCTAGTGATGT
* *
77732999 ATACTCATCCTGGTTTTTCGG
65 ATACTCATCATGATTTTTCGG
77733020 CAATGGGCCA
Statistics
Matches: 79, Mismatches: 4, Indels: 4
0.91 0.05 0.05
Matches are distributed among these distances:
83 14 0.18
84 52 0.66
85 1 0.01
86 12 0.15
ACGTcount: A:0.29, C:0.22, G:0.19, T:0.30
Consensus pattern (85 bp):
TTTGAGCTTAGGTTAACACAAGCTCAACGAATGCAAACCAGCTGACATCAATATCTAGTGATGTA
TACTCATCATGATTTTTCGG
Found at i:77734412 original size:18 final size:18
Alignment explanation
Indices: 77734385--77734451 Score: 57
Period size: 18 Copynumber: 3.6 Consensus size: 18
77734375 TACATAGAAT
77734385 ATTA-TACAATTATATAA
1 ATTATTACAATTATATAA
*
77734402 ATTATTACAATTTTCATAA
1 ATTATTACAATTAT-ATAA
* *
77734421 TGTTTTATACAATTAT-TCAA
1 -ATTAT-TACAATTATAT-AA
77734441 ATTATTACAAT
1 ATTATTACAAT
77734452 ATTTGTAATG
Statistics
Matches: 39, Mismatches: 6, Indels: 9
0.72 0.11 0.17
Matches are distributed among these distances:
17 4 0.10
18 14 0.36
19 8 0.21
20 5 0.13
21 8 0.21
ACGTcount: A:0.43, C:0.09, G:0.01, T:0.46
Consensus pattern (18 bp):
ATTATTACAATTATATAA
Found at i:77740875 original size:88 final size:88
Alignment explanation
Indices: 77740726--77740901 Score: 343
Period size: 88 Copynumber: 2.0 Consensus size: 88
77740716 TTGGAAAGTT
*
77740726 TAATAGTAAGGGCATTTTGGTCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAAT
1 TAATAGTAAGGGCATTTTGGGCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAAT
77740791 TTTGCTCATCTTCAACCCCATTG
66 TTTGCTCATCTTCAACCCCATTG
77740814 TAATAGTAAGGGCATTTTGGGCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAAT
1 TAATAGTAAGGGCATTTTGGGCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAAT
77740879 TTTGCTCATCTTCAACCCCATTG
66 TTTGCTCATCTTCAACCCCATTG
77740902 CCGAATATAG
Statistics
Matches: 87, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
88 87 1.00
ACGTcount: A:0.38, C:0.15, G:0.16, T:0.31
Consensus pattern (88 bp):
TAATAGTAAGGGCATTTTGGGCATTTAGGGGTAAAATGAATTAAAATACAAAATTAAAAGCCAAT
TTTGCTCATCTTCAACCCCATTG
Found at i:77741900 original size:47 final size:47
Alignment explanation
Indices: 77741781--77741909 Score: 167
Period size: 46 Copynumber: 2.8 Consensus size: 47
77741771 AGGATATTTG
*
77741781 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGA-GGATGCAAA
* * *
77741829 TG--TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATGTAACTA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAA--A
77741874 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT
77741910 CGTTAGAAAC
Statistics
Matches: 70, Mismatches: 6, Indels: 10
0.81 0.07 0.12
Matches are distributed among these distances:
43 6 0.09
45 4 0.06
46 29 0.41
47 29 0.41
48 2 0.03
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (47 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTGAGGATGCAAA
Found at i:77743041 original size:39 final size:40
Alignment explanation
Indices: 77742987--77743201 Score: 262
Period size: 39 Copynumber: 5.5 Consensus size: 40
77742977 AAACCAAGTA
* * * *
77742987 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
77743026 CCTTCGGGACTTAGCCCGGTTATAGTAACTCTCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77743066 CCTTCGGGA-TTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
77743105 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA-AAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
77743144 CCTTTGGG-CTTAGCCC-GAAATTAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
77743183 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
77743202 TTATCATCCA
Statistics
Matches: 154, Mismatches: 15, Indels: 12
0.85 0.08 0.07
Matches are distributed among these distances:
37 3 0.02
38 17 0.11
39 75 0.49
40 58 0.38
41 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:77743064 original size:40 final size:40
Alignment explanation
Indices: 77743020--77743205 Score: 263
Period size: 39 Copynumber: 4.7 Consensus size: 40
77743010 GCTACTTGCT
*
77743020 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCTCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
77743060 CAAATGCCTTCGGGA-TTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
77743099 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* ** * *
77743139 -AAATGCCTTTGGG-CTTAGCCC-GAAATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
77743177 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
77743206 CATCCAAATA
Statistics
Matches: 130, Mismatches: 11, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
37 3 0.02
38 17 0.13
39 62 0.48
40 46 0.35
41 2 0.02
ACGTcount: A:0.25, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:77745946 original size:28 final size:28
Alignment explanation
Indices: 77745906--77745962 Score: 114
Period size: 28 Copynumber: 2.0 Consensus size: 28
77745896 CCCCCAGGGG
77745906 CGTGTGGTATGGCTGTATGTTCCCTACA
1 CGTGTGGTATGGCTGTATGTTCCCTACA
77745934 CGTGTGGTATGGCTGTATGTTCCCTACA
1 CGTGTGGTATGGCTGTATGTTCCCTACA
77745962 C
1 C
77745963 CTAAAATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.14, C:0.23, G:0.28, T:0.35
Consensus pattern (28 bp):
CGTGTGGTATGGCTGTATGTTCCCTACA
Found at i:77755513 original size:39 final size:39
Alignment explanation
Indices: 77755412--77755527 Score: 133
Period size: 39 Copynumber: 3.0 Consensus size: 39
77755402 ACAGGAAATC
*
77755412 TTATTCAGTATAATCAGTGGATAATGCTTGTTTGAGCAA
1 TTATTCAGTATAATCAGTGGATATTGCTTGTTTGAGCAA
** * * * * *
77755451 GCATTTAATATAATTAATGGATATTGCTTGTTTGAGTAA
1 TTATTCAGTATAATCAGTGGATATTGCTTGTTTGAGCAA
* * *
77755490 TTATTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCA
1 TTATTCAGTATAATCAGTGGATATTGCTTGTTTGAGCA
77755528 CCTCAGTAGA
Statistics
Matches: 59, Mismatches: 18, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
39 59 1.00
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (39 bp):
TTATTCAGTATAATCAGTGGATATTGCTTGTTTGAGCAA
Found at i:77755589 original size:37 final size:37
Alignment explanation
Indices: 77755496--77756019 Score: 469
Period size: 37 Copynumber: 14.4 Consensus size: 37
77755486 GTAATTATTC
* * *
77755496 AGTAAAATCAGTAGATATTGCTCGTTTGAGCAC-CTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* *
77755532 AGTAGAATCAGTAGACATTGCTCGTTTGAGCACGTTA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * *
77755569 AGTAGGATCAATAGATATTGCTCG-TTGAGCACTTTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * * *
77755605 AGTAGAATTAGTAGACATTGCTCGTTTGAGCACATTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* ** *
77755642 AGTAGGATTTGTAGATATTGCTC-ATTGAGCACTTTA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * * *
77755678 AGTAGAATAAATAGATATTCCTCGTTTGAGCACTTTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * ** *
77755715 AGTAAAATCAGTAGACATTGCTTATTTGAGCACATTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTA
** * *
77755753 A-TAGGGTCGGTAGATATTGCTC-CTTGAGCACTTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-A
*
77755789 A-TAGTATCAGTAGATATTGCTCGTTTGAGCACTTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-A
* * * * *
77755826 A-TATAATCAGTAGATATTGCTTGTTTGACCATTTTT
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
* * * *
77755862 GGTAGAATCAATTGACATTGCTCGTTTGAGCACATTT-
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTA
* * * * * *
77755899 AGCAGCAT-TGTAGATATTGCTTGTTTGAGCATTTTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
*
77755935 AGTAGAATCAGTAGATATTGCTCGTTTGAACACTTTCA
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTT-A
* * *
77755973 A-TAGAACCAATAGATATTGCTCG-TTGAGCAC-TTC
1 AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
*
77756007 AGTAGAATTAGTA
1 AGTAGAATCAGTA
77756020 TTCCATTTTT
Statistics
Matches: 390, Mismatches: 86, Indels: 25
0.78 0.17 0.05
Matches are distributed among these distances:
34 1 0.00
35 15 0.04
36 148 0.38
37 219 0.56
38 7 0.02
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.35
Consensus pattern (37 bp):
AGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTA
Found at i:77755592 original size:73 final size:74
Alignment explanation
Indices: 77755470--77756019 Score: 522
Period size: 73 Copynumber: 7.5 Consensus size: 74
77755460 ATAATTAATG
* * * * *
77755470 GATATTGCTTGTTTGAGTAATTATTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCAC-CTCAG
1 GATATTGCTCGTTTGAG-CACT-TTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAG
77755534 TAGAATCAGTA
64 TAGAATCAGTA
* * * * * *
77755545 GACATTGCTCGTTTGAGCACGTTAAGTAGGATCAATAGATATTGCTCG-TTGAGCACTTTTAGTA
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTA
*
77755609 GAATTAGTA
66 GAATCAGTA
* * * ** * *
77755618 GACATTGCTCGTTTGAGCACATTCAGTAGGATTTGTAGATATTGCTC-ATTGAGCACTTTAAGTA
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTA
* *
77755682 GAATAAATA
66 GAATCAGTA
* * * * ** * *
77755691 GATATTCCTCGTTTGAGCACTTTTAGTAAAATCAGTAGACATTGCTTATTTGAGCACATTCAATA
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTA
** *
77755756 GGGTCGGTA
66 GAATCAGTA
* * * *
77755765 GATATTGCTC-CTTGAGCACTTTCAATAGTATCAGTAGATATTGCTCGTTTGAGCACTTTCAATA
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTA
*
77755829 TAATCAGTA
66 GAATCAGTA
* * * ** * * * *
77755838 GATATTGCTTGTTTGACCATTTTTGGTAGAATCAATTGACATTGCTCGTTTGAGCACATTT-AGC
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCAC-TTTCAGT
* *
77755902 AGCAT-TGTA
65 AGAATCAGTA
* * * *
77755911 GATATTGCTTGTTTGAGCATTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAACACTTTCAATA
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTA
* *
77755976 GAACCAATA
66 GAATCAGTA
*
77755985 GATATTGCTCG-TTGAGCAC-TTCAGTAGAATTAGTA
1 GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTA
77756020 TTCCATTTTT
Statistics
Matches: 383, Mismatches: 85, Indels: 17
0.79 0.18 0.04
Matches are distributed among these distances:
72 26 0.07
73 260 0.68
74 79 0.21
75 18 0.05
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (74 bp):
GATATTGCTCGTTTGAGCACTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAGCACTTTCAGTA
GAATCAGTA
Found at i:77755732 original size:110 final size:110
Alignment explanation
Indices: 77755470--77756014 Score: 492
Period size: 110 Copynumber: 5.0 Consensus size: 110
77755460 ATAATTAATG
* * * * *
77755470 GATATTGCTTGTTTGAGTAATTATTCAGTAAAATCAGTAGATATTGCTCGTTTGAGCAC-CTCAG
1 GATATTGCTCGTTTGAGCACTT-TT-AGTAAAATCAGTAGACATTGCTCGTTTGAGCACATTCAG
* * * * *
77755534 TAGAATCAGTAGACATTGCTCGTTTGAGCACGTTAAGTAGGATCAATA
64 TAGGATCAGTAGATATTGCTC-ATTGAGCACTTTAAGTAGAATCAATA
* *
77755582 GATATTGCTCG-TTGAGCACTTTTAGTAGAATTAGTAGACATTGCTCGTTTGAGCACATTCAGTA
1 GATATTGCTCGTTTGAGCACTTTTAGTAAAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTA
** *
77755646 GGATTTGTAGATATTGCTCATTGAGCACTTTAAGTAGAATAAATA
66 GGATCAGTAGATATTGCTCATTGAGCACTTTAAGTAGAATCAATA
* ** *
77755691 GATATTCCTCGTTTGAGCACTTTTAGTAAAATCAGTAGACATTGCTTATTTGAGCACATTCAATA
1 GATATTGCTCGTTTGAGCACTTTTAGTAAAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTA
* * * * *
77755756 GGGTCGGTAGATATTGCTCCTTGAGCACTTTCAA-TAGTATCAGTA
66 GGATCAGTAGATATTGCTCATTGAGCACTTT-AAGTAGAATCAATA
* * * * * * ** **
77755801 GATATTGCTCGTTTGAGCACTTTCAATATAATCAGTAGATATTGCTTGTTTGACCATTTTTGGTA
1 GATATTGCTCGTTTGAGCACTTTTAGTAAAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTA
* * * * * * * **
77755866 GAATCAATTGACATTGCTCGTTTGAGCACATTT-AGCAGCAT-TGTA
66 GGATCAGTAGATATTGCTC-ATTGAGCAC-TTTAAGTAGAATCAATA
* * * * * *
77755911 GATATTGCTTGTTTGAGCA-TTTTCAGTAGAATCAGTAGATATTGCTCGTTTGAACACTTTCAAT
1 GATATTGCTCGTTTGAGCACTTTT-AGTAAAATCAGTAGACATTGCTCGTTTGAGCACATTCAGT
* * * * *
77755975 AGAACCAATAGATATTGCTCGTTGAGCAC-TTCAGTAGAAT
65 AGGATCAGTAGATATTGCTCATTGAGCACTTTAAGTAGAAT
77756015 TAGTATTCCA
Statistics
Matches: 359, Mismatches: 66, Indels: 20
0.81 0.15 0.04
Matches are distributed among these distances:
107 2 0.01
108 6 0.02
109 73 0.20
110 243 0.68
111 22 0.06
112 13 0.04
ACGTcount: A:0.29, C:0.15, G:0.20, T:0.36
Consensus pattern (110 bp):
GATATTGCTCGTTTGAGCACTTTTAGTAAAATCAGTAGACATTGCTCGTTTGAGCACATTCAGTA
GGATCAGTAGATATTGCTCATTGAGCACTTTAAGTAGAATCAATA
Found at i:77757656 original size:15 final size:15
Alignment explanation
Indices: 77757636--77757664 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
77757626 AGGAGAAGAA
77757636 ATGAAATTAATGATG
1 ATGAAATTAATGATG
77757651 ATGAAATTAATGAT
1 ATGAAATTAATGAT
77757665 ATTATTCTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.00, G:0.17, T:0.34
Consensus pattern (15 bp):
ATGAAATTAATGATG
Found at i:77764534 original size:54 final size:54
Alignment explanation
Indices: 77764452--77764556 Score: 210
Period size: 54 Copynumber: 1.9 Consensus size: 54
77764442 GGGTTACGAA
77764452 ACATTTCTGGAAAAGATAAAACTTTCTCACCTTCACACAGTTAATCAAACTTAG
1 ACATTTCTGGAAAAGATAAAACTTTCTCACCTTCACACAGTTAATCAAACTTAG
77764506 ACATTTCTGGAAAAGATAAAACTTTCTCACCTTCACACAGTTAATCAAACT
1 ACATTTCTGGAAAAGATAAAACTTTCTCACCTTCACACAGTTAATCAAACT
77764557 AAGTTCAAAA
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.30
Consensus pattern (54 bp):
ACATTTCTGGAAAAGATAAAACTTTCTCACCTTCACACAGTTAATCAAACTTAG
Found at i:77772592 original size:16 final size:16
Alignment explanation
Indices: 77772571--77772601 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
77772561 ACCAAGTACT
*
77772571 TGATCTGTGTAGACTG
1 TGATCTATGTAGACTG
77772587 TGATCTATGTAGACT
1 TGATCTATGTAGACT
77772602 ATGACCTTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.39
Consensus pattern (16 bp):
TGATCTATGTAGACTG
Found at i:77775246 original size:49 final size:49
Alignment explanation
Indices: 77775162--77775259 Score: 126
Period size: 49 Copynumber: 2.0 Consensus size: 49
77775152 GAAAAAGAAA
** *
77775162 AGTAAAGGGGAAGTAGGGTAGAATTCTCAGGGACCAGATTGCAGGAATG
1 AGTAAAGGGGAAGTAGGGTAGAATTCTCAAAGACCAGACTGCAGGAATG
* * *
77775211 AGTAAATGGGAAGTAGGGTCGAA-TCTTTAAAGACCAGACTGCAGGAATG
1 AGTAAAGGGGAAGTAGGGTAGAATTC-TCAAAGACCAGACTGCAGGAATG
77775260 CTTGTTTCTC
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
48 2 0.05
49 40 0.95
ACGTcount: A:0.36, C:0.11, G:0.34, T:0.19
Consensus pattern (49 bp):
AGTAAAGGGGAAGTAGGGTAGAATTCTCAAAGACCAGACTGCAGGAATG
Found at i:77775384 original size:12 final size:11
Alignment explanation
Indices: 77775366--77775396 Score: 53
Period size: 12 Copynumber: 2.7 Consensus size: 11
77775356 AATAAAATAA
77775366 AAATTGAATTG
1 AAATTGAATTG
77775377 AAAGTTGAATTG
1 AAA-TTGAATTG
77775389 AAATTGAA
1 AAATTGAA
77775397 AAATTAAATA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
11 8 0.42
12 11 0.58
ACGTcount: A:0.48, C:0.00, G:0.19, T:0.32
Consensus pattern (11 bp):
AAATTGAATTG
Found at i:77775427 original size:23 final size:22
Alignment explanation
Indices: 77775384--77775431 Score: 53
Period size: 23 Copynumber: 2.1 Consensus size: 22
77775374 TTGAAAGTTG
*
77775384 AATTGAAATTGAAAAATTAAATA
1 AATTGAAATGGAAAAATTAAA-A
*
77775407 AATTGAAATGG-AGAATATAAAA
1 AATTGAAATGGAAAAAT-TAAAA
77775429 AAT
1 AAT
77775432 AAGCAGAGAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
22 8 0.36
23 14 0.64
ACGTcount: A:0.60, C:0.00, G:0.12, T:0.27
Consensus pattern (22 bp):
AATTGAAATGGAAAAATTAAAA
Found at i:77776150 original size:20 final size:19
Alignment explanation
Indices: 77776126--77776185 Score: 68
Period size: 20 Copynumber: 3.0 Consensus size: 19
77776116 TTAAATTCTA
77776126 AAAGATAAATACAAATAAA-
1 AAAGATAAATA-AAATAAAT
*
77776145 ATAAGATAATTAAAGATAAAT
1 A-AAGATAAATAAA-ATAAAT
77776166 AAAGATAAATAAAATTAAAT
1 AAAGATAAATAAAA-TAAAT
77776186 CCTAAATTTA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
19 4 0.11
20 30 0.86
21 1 0.03
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.23
Consensus pattern (19 bp):
AAAGATAAATAAAATAAAT
Found at i:77776153 original size:10 final size:10
Alignment explanation
Indices: 77776126--77776178 Score: 65
Period size: 10 Copynumber: 5.3 Consensus size: 10
77776116 TTAAATTCTA
77776126 AAAGATAAAT
1 AAAGATAAAT
77776136 ACAA-ATAAA-
1 A-AAGATAAAT
*
77776145 ATAAGATAATT
1 A-AAGATAAAT
77776156 AAAGATAAAT
1 AAAGATAAAT
77776166 AAAGATAAAT
1 AAAGATAAAT
77776176 AAA
1 AAA
77776179 ATTAAATCCT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
9 3 0.08
10 31 0.84
11 3 0.08
ACGTcount: A:0.70, C:0.02, G:0.08, T:0.21
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:77776158 original size:24 final size:24
Alignment explanation
Indices: 77776131--77776177 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
77776121 TTCTAAAAGA
*
77776131 TAAATACAAATAAA-ATAAGATAAT
1 TAAAGACAAATAAAGATAA-ATAAT
*
77776155 TAAAGATAAATAAAGATAAATAA
1 TAAAGACAAATAAAGATAAATAA
77776178 AATTAAATCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 16 0.80
25 4 0.20
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.23
Consensus pattern (24 bp):
TAAAGACAAATAAAGATAAATAAT
Found at i:77779116 original size:46 final size:46
Alignment explanation
Indices: 77779066--77779564 Score: 842
Period size: 46 Copynumber: 10.8 Consensus size: 46
77779056 ATGGTTGAGC
77779066 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
77779112 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
77779158 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
77779204 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
77779250 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
77779296 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
77779342 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
77779388 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
* * * *
77779434 GTCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAG
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--AT
* * * *
77779479 GCATCCGAACTCGTGGAGTTGAGTCCGAGTTCACTCATGGATGCGAAC
1 G--TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
* * *
77779527 GCCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
77779565 GCGAGTTACA
Statistics
Matches: 431, Mismatches: 15, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
43 6 0.01
45 4 0.01
46 384 0.89
47 28 0.06
48 4 0.01
50 5 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.29
Consensus pattern (46 bp):
GTCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAT
Found at i:77782509 original size:15 final size:15
Alignment explanation
Indices: 77782489--77782544 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
77782479 GTATCTTGGG
77782489 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
77782504 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
77782519 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
77782534 TTTCTTTATTC
1 TTTCTTTATTC
77782545 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:77785184 original size:50 final size:50
Alignment explanation
Indices: 77785124--77785224 Score: 202
Period size: 50 Copynumber: 2.0 Consensus size: 50
77785114 AGTTCTACTC
77785124 AAATGGAGGAATACTCAAGATGAAAGGGACGTATTGGTAAGTGTTGTGAA
1 AAATGGAGGAATACTCAAGATGAAAGGGACGTATTGGTAAGTGTTGTGAA
77785174 AAATGGAGGAATACTCAAGATGAAAGGGACGTATTGGTAAGTGTTGTGAA
1 AAATGGAGGAATACTCAAGATGAAAGGGACGTATTGGTAAGTGTTGTGAA
77785224 A
1 A
77785225 TGGATACTTT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.39, C:0.06, G:0.32, T:0.24
Consensus pattern (50 bp):
AAATGGAGGAATACTCAAGATGAAAGGGACGTATTGGTAAGTGTTGTGAA
Found at i:77788017 original size:15 final size:15
Alignment explanation
Indices: 77787997--77788052 Score: 87
Period size: 15 Copynumber: 3.7 Consensus size: 15
77787987 GTATCTTGGG
77787997 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
77788012 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
77788027 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
77788042 TTTCTTTATTC
1 TTTCTTTATTC
77788053 GGTTTCCTTG
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
14 2 0.05
15 33 0.89
16 2 0.05
ACGTcount: A:0.12, C:0.16, G:0.11, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:77795151 original size:21 final size:21
Alignment explanation
Indices: 77795112--77795180 Score: 63
Period size: 21 Copynumber: 3.2 Consensus size: 21
77795102 TCCAAACGCT
77795112 CGTGTGA-AGAGTAGCACATGGC
1 CGTGTGACAGAG--GCACATGGC
*
77795134 CGTGTGACAGAGGCACATGCC
1 CGTGTGACAGAGGCACATGGC
*
77795155 CATGTGGTACAGAGGCAC--GGC
1 CGTGT-G-ACAGAGGCACATGGC
77795176 CGTGT
1 CGTGT
77795181 AAGACACTGT
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
21 18 0.45
22 8 0.20
23 14 0.35
ACGTcount: A:0.23, C:0.23, G:0.36, T:0.17
Consensus pattern (21 bp):
CGTGTGACAGAGGCACATGGC
Found at i:77796289 original size:5 final size:5
Alignment explanation
Indices: 77796279--77796360 Score: 66
Period size: 5 Copynumber: 16.4 Consensus size: 5
77796269 AGTAATAAAT
* *
77796279 AATAA AATAA AATAA AGTAA TGAAT-A AAT-A AATGATA AATTA AATAA
1 AATAA AATAA AATAA AATAA --AATAA AATAA AAT-A-A AATAA AATAA
77796326 AAT-- AATAA AATAA AATAA AATAA AGA-AA AATAA AA
1 AATAA AATAA AATAA AATAA AATAA A-ATAA AATAA AA
77796361 ATTGGGTTGC
Statistics
Matches: 64, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
3 3 0.05
4 8 0.12
5 45 0.70
6 2 0.03
7 6 0.09
ACGTcount: A:0.73, C:0.00, G:0.05, T:0.22
Consensus pattern (5 bp):
AATAA
Found at i:77800100 original size:10 final size:10
Alignment explanation
Indices: 77800066--77800115 Score: 50
Period size: 10 Copynumber: 5.0 Consensus size: 10
77800056 TTAAATTCTA
77800066 AAAGATAAAT
1 AAAGATAAAT
77800076 ACAA-ATAAA-
1 A-AAGATAAAT
*
77800085 ATAAGATAATT
1 A-AAGATAAAT
77800096 AAAGATAAAT
1 AAAGATAAAT
*
77800106 AAAAATAAAT
1 AAAGATAAAT
77800116 CCTAAATTTA
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 3 0.09
10 27 0.82
11 3 0.09
ACGTcount: A:0.70, C:0.02, G:0.06, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:77802170 original size:10 final size:10
Alignment explanation
Indices: 77802138--77802196 Score: 55
Period size: 10 Copynumber: 5.9 Consensus size: 10
77802128 TTAAATTTTA
77802138 AAAAATAAAT
1 AAAAATAAAT
* *
77802148 ACAATTAAAT
1 AAAAATAAAT
*
77802158 AAAAATAATT
1 AAAAATAAAT
*
77802168 AAAGATAAAT
1 AAAAATAAAT
**
77802178 AAGGATAAAT
1 AAAAATAAAT
*
77802188 AAAGATAAA
1 AAAAATAAA
77802197 AGTTAAAATT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
10 40 1.00
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:77802176 original size:20 final size:20
Alignment explanation
Indices: 77802138--77802196 Score: 66
Period size: 20 Copynumber: 3.0 Consensus size: 20
77802128 TTAAATTTTA
*
77802138 AAAAATAAATACAA-TTAAAT
1 AAAAATAAATA-AAGATAAAT
*
77802158 AAAAATAATTAAAGATAAAT
1 AAAAATAAATAAAGATAAAT
**
77802178 AAGGATAAATAAAGATAAA
1 AAAAATAAATAAAGATAAA
77802197 AGTTAAAATT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
19 2 0.06
20 31 0.94
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (20 bp):
AAAAATAAATAAAGATAAAT
Found at i:77802232 original size:13 final size:12
Alignment explanation
Indices: 77802214--77802246 Score: 50
Period size: 13 Copynumber: 2.8 Consensus size: 12
77802204 ATTAAATCTA
77802214 AATAATAATCCTT
1 AATAATAATCC-T
77802227 AATAATAATCCT
1 AATAATAATCCT
77802239 AAT-ATAAT
1 AATAATAAT
77802247 TGGAATTAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 5 0.25
12 4 0.20
13 11 0.55
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (12 bp):
AATAATAATCCT
Found at i:77802838 original size:18 final size:19
Alignment explanation
Indices: 77802815--77802850 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
77802805 TATTAATACA
77802815 TCATTTTTTC-TTTTTTTT
1 TCATTTTTTCATTTTTTTT
77802833 TCATTTTTTCATTTTTTT
1 TCATTTTTTCATTTTTTT
77802851 CTCTCTTTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.08, C:0.11, G:0.00, T:0.81
Consensus pattern (19 bp):
TCATTTTTTCATTTTTTTT
Found at i:77802874 original size:3 final size:3
Alignment explanation
Indices: 77802866--77802909 Score: 88
Period size: 3 Copynumber: 14.7 Consensus size: 3
77802856 TTTTGTTTTC
77802866 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
77802910 GCTTAAGAAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:77803075 original size:100 final size:100
Alignment explanation
Indices: 77802896--77803076 Score: 233
Period size: 98 Copynumber: 1.8 Consensus size: 100
77802886 ATTATTATTA
* * * *
77802896 TTATTATTATTATTGCTTAAGAATACATTGAACCTTTTGATGTGAAGAGAGTGACAGCCAAGCAC
1 TTATTATTATTATTGCTTAAGAACACATCGAACCTTTTGAAGTGAAGAGAGTGACAACCAAGCAC
77802961 CCCACCCCGGTTACTCAGCCCAACAAACTCCTAAT
66 CCCACCCCGGTTACTCAGCCCAACAAACTCCTAAT
* * *
77802996 TTATTA-TATT-TTTCTTAAGAACATATCGAACCTTTTGAAGTGAA-ATAGGATGACAACTCAAG
1 TTATTATTATTATTGCTTAAGAACACATCGAACCTTTTGAAGTGAAGAGA-G-TGACAAC-CAAG
* *
77803058 CACCCTACCTCGGTTACTC
63 CACCCCACCCCGGTTACTC
77803077 GGTTAGTCAC
Statistics
Matches: 69, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
97 2 0.03
98 30 0.43
99 10 0.14
100 27 0.39
ACGTcount: A:0.32, C:0.23, G:0.14, T:0.30
Consensus pattern (100 bp):
TTATTATTATTATTGCTTAAGAACACATCGAACCTTTTGAAGTGAAGAGAGTGACAACCAAGCAC
CCCACCCCGGTTACTCAGCCCAACAAACTCCTAAT
Found at i:77804987 original size:14 final size:15
Alignment explanation
Indices: 77804968--77805005 Score: 51
Period size: 17 Copynumber: 2.5 Consensus size: 15
77804958 AATCTTTAAG
77804968 GATATG-CAATCTTA
1 GATATGACAATCTTA
77804982 GATATGATACAATCTTA
1 GATATG--ACAATCTTA
77804999 GATATGA
1 GATATGA
77805006 TATGCAATCA
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
14 6 0.29
15 1 0.05
17 14 0.67
ACGTcount: A:0.39, C:0.11, G:0.16, T:0.34
Consensus pattern (15 bp):
GATATGACAATCTTA
Found at i:77805019 original size:19 final size:19
Alignment explanation
Indices: 77804968--77805046 Score: 108
Period size: 19 Copynumber: 4.2 Consensus size: 19
77804958 AATCTTTAAG
77804968 GATATGCAATCTTAGATAT
1 GATATGCAATCTTAGATAT
77804987 GATA--CAATCTTAGATAT
1 GATATGCAATCTTAGATAT
*
77805004 GATATGCAATCATAGATAT
1 GATATGCAATCTTAGATAT
*
77805023 GATGTGCAATCTTAAAGATAT
1 GATATGCAATCTT--AGATAT
77805044 GAT
1 GAT
77805047 CTTGTAATCT
Statistics
Matches: 53, Mismatches: 3, Indels: 6
0.85 0.05 0.10
Matches are distributed among these distances:
17 17 0.32
19 27 0.51
21 9 0.17
ACGTcount: A:0.39, C:0.10, G:0.16, T:0.34
Consensus pattern (19 bp):
GATATGCAATCTTAGATAT
Found at i:77805347 original size:45 final size:45
Alignment explanation
Indices: 77805297--77805385 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
77805287 TTTAATTTCT
*
77805297 TCATTTTTCAAATATGTATTTTTATTCCTATCTTTTATACATTTG
1 TCATTTTTCAAATATGTATATTTATTCCTATCTTTTATACATTTG
77805342 TCATTTTTCAAATATGTATATTTATTCCTATCTTTTATACATTT
1 TCATTTTTCAAATATGTATATTTATTCCTATCTTTTATACATTT
77805386 TATTATGTAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.26, C:0.13, G:0.03, T:0.57
Consensus pattern (45 bp):
TCATTTTTCAAATATGTATATTTATTCCTATCTTTTATACATTTG
Found at i:77811852 original size:8 final size:8
Alignment explanation
Indices: 77811839--77811916 Score: 56
Period size: 7 Copynumber: 9.6 Consensus size: 8
77811829 TCTATTTCAA
77811839 AAAAAAGG
1 AAAAAAGG
*
77811847 AAAAAAGAA
1 AAAAAAG-G
*
77811856 AAGAAAAAG
1 AA-AAAAGG
77811865 AGAAAAAGAG
1 A-AAAAAG-G
*
77811875 AAAAAAAG
1 AAAAAAGG
77811883 -AAAAA-G
1 AAAAAAGG
77811889 AAAAAAGAG
1 AAAAAAG-G
77811898 AAAAAA-G
1 AAAAAAGG
77811905 AAAAAA-G
1 AAAAAAGG
77811912 AAAAA
1 AAAAA
77811917 TGGAGAGGCC
Statistics
Matches: 58, Mismatches: 5, Indels: 15
0.74 0.06 0.19
Matches are distributed among these distances:
6 1 0.02
7 23 0.40
8 8 0.14
9 19 0.33
10 7 0.12
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (8 bp):
AAAAAAGG
Found at i:77811856 original size:7 final size:7
Alignment explanation
Indices: 77811839--77811916 Score: 81
Period size: 8 Copynumber: 10.7 Consensus size: 7
77811829 TCTATTTCAA
77811839 AAAAAAGG
1 AAAAAA-G
77811847 AAAAAAG
1 AAAAAAG
77811854 --AAAAG
1 AAAAAAG
77811859 AAAAAGAG
1 AAAAA-AG
77811867 AAAAAGAG
1 AAAAA-AG
77811875 AAAAAA-
1 AAAAAAG
77811881 AGAAAAAG
1 A-AAAAAG
77811889 AAAAAAGAG
1 -AAAAA-AG
77811898 AAAAAAG
1 AAAAAAG
77811905 AAAAAAG
1 AAAAAAG
77811912 AAAAA
1 AAAAA
77811917 TGGAGAGGCC
Statistics
Matches: 63, Mismatches: 0, Indels: 15
0.81 0.00 0.19
Matches are distributed among these distances:
5 5 0.08
6 1 0.02
7 24 0.38
8 30 0.48
9 3 0.05
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (7 bp):
AAAAAAG
Done.