Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 231 of 297
Found at i:78929678 original size:21 final size:23
Alignment explanation
Indices: 78929636--78929681 Score: 55
Period size: 21 Copynumber: 2.2 Consensus size: 23
78929626 TAATTAATCA
*
78929636 TAAACAGAAGCAAATCTCTTTTC
1 TAAACAGAAGCAAATATCTTTTC
78929659 TAAA-AGAAG-AAATAT-TTTT-
1 TAAACAGAAGCAAATATCTTTTC
78929678 TAAA
1 TAAA
78929682 AAAAATTAAC
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 4 0.18
20 4 0.18
21 5 0.23
22 5 0.23
23 4 0.18
ACGTcount: A:0.48, C:0.11, G:0.09, T:0.33
Consensus pattern (23 bp):
TAAACAGAAGCAAATATCTTTTC
Found at i:78932960 original size:15 final size:16
Alignment explanation
Indices: 78932921--78932961 Score: 59
Period size: 15 Copynumber: 2.7 Consensus size: 16
78932911 AAAGTTTCTC
*
78932921 CAAATTTTTAAGTTTT
1 CAAAATTTTAAGTTTT
78932937 CAAAA-TTTAAGTTTT
1 CAAAATTTTAAGTTTT
78932952 -AAAATTTTAA
1 CAAAATTTTAA
78932962 TTACAAATTT
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 15 0.65
16 4 0.17
ACGTcount: A:0.41, C:0.05, G:0.05, T:0.49
Consensus pattern (16 bp):
CAAAATTTTAAGTTTT
Found at i:78934488 original size:26 final size:26
Alignment explanation
Indices: 78934443--78934506 Score: 101
Period size: 26 Copynumber: 2.5 Consensus size: 26
78934433 CGACCCATGG
*
78934443 CTCATGTGAGCAGGCCCATTTCACAA
1 CTCATGTGAGCAGACCCATTTCACAA
* *
78934469 CTCGTGTGAGCAGACTCATTTCACAA
1 CTCATGTGAGCAGACCCATTTCACAA
78934495 CTCATGTGAGCA
1 CTCATGTGAGCA
78934507 ACGATGTAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 34 1.00
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (26 bp):
CTCATGTGAGCAGACCCATTTCACAA
Found at i:78936464 original size:35 final size:35
Alignment explanation
Indices: 78936413--78936483 Score: 115
Period size: 35 Copynumber: 2.0 Consensus size: 35
78936403 CACACAGCCG
*
78936413 TGTGACCCCTGCAGTATGAAATTTTCTATCTTTTT
1 TGTGACCCCTGCAGTATAAAATTTTCTATCTTTTT
* *
78936448 TGTGATCCCTGTAGTATAAAATTTTCTATCTTTTT
1 TGTGACCCCTGCAGTATAAAATTTTCTATCTTTTT
78936483 T
1 T
78936484 CTTAATGCTT
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.21, C:0.17, G:0.13, T:0.49
Consensus pattern (35 bp):
TGTGACCCCTGCAGTATAAAATTTTCTATCTTTTT
Found at i:78937680 original size:42 final size:42
Alignment explanation
Indices: 78937630--78937712 Score: 157
Period size: 42 Copynumber: 2.0 Consensus size: 42
78937620 ATTCATATGT
78937630 TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAAA
1 TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAAA
*
78937672 TTGGTTTAGTGGAATAGAGACTGTAATAGCATAAGGAAAAA
1 TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAA
78937713 TGCTCAAATG
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.43, C:0.05, G:0.27, T:0.25
Consensus pattern (42 bp):
TTGGTTTAGTGGAATAGAGACTGAAATAGCATAAGGAAAAAA
Found at i:78939432 original size:66 final size:66
Alignment explanation
Indices: 78939254--78939432 Score: 198
Period size: 66 Copynumber: 2.7 Consensus size: 66
78939244 CTAGTGAGCT
* * **
78939254 TACTGACTTGGGTCACACGGCCAAGCCACACGTCCATGTGCTAGGCTGTGTGAAAAATGATGGGC
1 TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCCATGTGAAAAATGATGGGC
78939319 A
66 A
* ** * *
78939320 TACTGACTTGTGACACACGGCCAAGCCACACACCCGTGAGCTAGGCCATGTGAAAACTGGA-GGG
1 TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCCATGTGAAAAAT-GATGGG
*
78939384 TA
65 CA
* ** * * *
78939386 TACTGACTTATGTCACACGGTTAAGTCACACGTCTGTGTGCCAGGCC
1 TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCC
78939433 GTCTGACACT
Statistics
Matches: 92, Mismatches: 20, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
66 90 0.98
67 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.27, T:0.21
Consensus pattern (66 bp):
TACTGACTTGTGTCACACGGCCAAGCCACACGTCCGTGTGCTAGGCCATGTGAAAAATGATGGGC
A
Found at i:78940755 original size:36 final size:35
Alignment explanation
Indices: 78940705--78940776 Score: 92
Period size: 36 Copynumber: 2.0 Consensus size: 35
78940695 ACATTTAATA
78940705 CATATCTCGGAAGATCA-TCTTCCATATTTGCCAAG
1 CATATCTCGGAAGATCACT-TTCCATATTTGCCAAG
* * *
78940740 CATATCTTTGGAAGATCACTTTTCTTATTTGCCAAG
1 CATATC-TCGGAAGATCACTTTCCATATTTGCCAAG
78940776 C
1 C
78940777 TCCAGAGATG
Statistics
Matches: 32, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
35 6 0.19
36 25 0.78
37 1 0.03
ACGTcount: A:0.26, C:0.24, G:0.14, T:0.36
Consensus pattern (35 bp):
CATATCTCGGAAGATCACTTTCCATATTTGCCAAG
Found at i:78943291 original size:3 final size:3
Alignment explanation
Indices: 78943283--78943323 Score: 50
Period size: 3 Copynumber: 14.3 Consensus size: 3
78943273 ATGACTCACC
* *
78943283 TAT TAT TAT TAT TAT T-T TTT TTT TAT TAT TAT TAT T-T TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
78943324 CTTTAACTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
2 4 0.11
3 31 0.89
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (3 bp):
TAT
Found at i:78943310 original size:14 final size:14
Alignment explanation
Indices: 78943283--78943323 Score: 55
Period size: 14 Copynumber: 2.9 Consensus size: 14
78943273 ATGACTCACC
78943283 TATTATTATTATTAT
1 TATTATT-TTATTAT
* *
78943298 TTTTTTTTTATTAT
1 TATTATTTTATTAT
78943312 TATTATTTTATT
1 TATTATTTTATT
78943324 CTTTAACTTA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.24, C:0.00, G:0.00, T:0.76
Consensus pattern (14 bp):
TATTATTTTATTAT
Found at i:78944426 original size:29 final size:28
Alignment explanation
Indices: 78944383--78944440 Score: 98
Period size: 29 Copynumber: 2.0 Consensus size: 28
78944373 AATGCAGTTG
78944383 AAAGAGTATACTACTATTTATTTGAAAA
1 AAAGAGTATACTACTATTTATTTGAAAA
*
78944411 ANAAGAGTGTACTACTATTTATTTGAAAA
1 A-AAGAGTATACTACTATTTATTTGAAAA
78944440 A
1 A
78944441 CTACATACTT
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
28 1 0.04
29 27 0.96
ACGTcount: A:0.45, C:0.07, G:0.12, T:0.34
Consensus pattern (28 bp):
AAAGAGTATACTACTATTTATTTGAAAA
Found at i:78944449 original size:26 final size:26
Alignment explanation
Indices: 78944390--78944449 Score: 66
Period size: 29 Copynumber: 2.2 Consensus size: 26
78944380 TTGAAAGAGT
* *
78944390 ATACTACTATTTATTTGAAAAANAAG
1 ATACTACTATTTATTTGAAAAACAAC
*
78944416 AGTGTACTACTATTTATTTGAAAAACTAC
1 A---TACTACTATTTATTTGAAAAACAAC
78944445 ATACT
1 ATACT
78944450 TTATTGTGTG
Statistics
Matches: 28, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
26 5 0.18
29 23 0.82
ACGTcount: A:0.42, C:0.12, G:0.08, T:0.37
Consensus pattern (26 bp):
ATACTACTATTTATTTGAAAAACAAC
Found at i:78945845 original size:41 final size:40
Alignment explanation
Indices: 78945800--78945914 Score: 131
Period size: 40 Copynumber: 2.8 Consensus size: 40
78945790 AGCGGCACTT
* *
78945800 TTAGCGGCGTTTGTACAAAAAACGCCGCTAAAAATCGAGCA
1 TTAGCGGCGTTT-TAGAAAAAACGCCACTAAAAATCGAGCA
** ** *
78945841 TTAGCGGCGCATTAGTTAAAACGCCACTAAAGATCGAGCA
1 TTAGCGGCGTTTTAGAAAAAACGCCACTAAAAATCGAGCA
* *
78945881 TTAGCGGCGTTTTTTGAAAAAACGCCACAAAAAA
1 TTAGCGGCG-TTTTAGAAAAAACGCCACTAAAAA
78945915 CCTAAGCCCA
Statistics
Matches: 59, Mismatches: 14, Indels: 2
0.79 0.19 0.03
Matches are distributed among these distances:
40 32 0.54
41 27 0.46
ACGTcount: A:0.37, C:0.21, G:0.21, T:0.21
Consensus pattern (40 bp):
TTAGCGGCGTTTTAGAAAAAACGCCACTAAAAATCGAGCA
Found at i:78946030 original size:41 final size:41
Alignment explanation
Indices: 78945951--78946070 Score: 168
Period size: 41 Copynumber: 2.9 Consensus size: 41
78945941 CCTTTCGGGG
* * * * *
78945951 CTTTAGCGACGTTTTTAAAAAAATCGCCGCTAAAGCTCAGAT
1 CTTTAGCGGCGTTTCT-AGAAAAGCGCCGCTAATGCTCAGAT
78945993 CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTCAGAT
1 CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTCAGAT
* *
78946034 CTTTAGCGGCGATTCTAGAAATGCGCCGCTAATGCTC
1 CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTC
78946071 GAGGCTTTAG
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
41 57 0.80
42 14 0.20
ACGTcount: A:0.27, C:0.24, G:0.22, T:0.28
Consensus pattern (41 bp):
CTTTAGCGGCGTTTCTAGAAAAGCGCCGCTAATGCTCAGAT
Found at i:78946584 original size:14 final size:14
Alignment explanation
Indices: 78946554--78946605 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
78946544 GGGTTGTGAT
* *
78946554 TTAAGGTTTATGGG
1 TTAAGGGTTAGGGG
*
78946568 TTAGGGGTTAGGGG
1 TTAAGGGTTAGGGG
* *
78946582 TTAATGGTTAGAGG
1 TTAAGGGTTAGGGG
*
78946596 TTAAGAGTTA
1 TTAAGGGTTA
78946606 AGGATTTAAG
Statistics
Matches: 30, Mismatches: 8, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
14 30 1.00
ACGTcount: A:0.25, C:0.00, G:0.38, T:0.37
Consensus pattern (14 bp):
TTAAGGGTTAGGGG
Found at i:78946605 original size:21 final size:21
Alignment explanation
Indices: 78946566--78946606 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
78946556 AAGGTTTATG
* * *
78946566 GGTTAGGGGTTAGGGGTTAAT
1 GGTTAGAGGTTAAGAGTTAAT
78946587 GGTTAGAGGTTAAGAGTTAA
1 GGTTAGAGGTTAAGAGTTAA
78946607 GGATTTAAGG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.27, C:0.00, G:0.41, T:0.32
Consensus pattern (21 bp):
GGTTAGAGGTTAAGAGTTAAT
Found at i:78947775 original size:108 final size:107
Alignment explanation
Indices: 78947675--78947964 Score: 535
Period size: 108 Copynumber: 2.7 Consensus size: 107
78947665 AATAAAAGAT
78947675 TTTTAGCATAGCAAAACAGTGTCGTTTTATTCGAAATGAAATAATTTTTTGCGGCGTTTTTATGA
1 TTTTAGCATAGCAAAACAGTGTCGTTTTATTCGAAATGAAATAATTTTTTGCGGCGTTTTTATGA
78947740 AAAACGCCACAAAAAATAATTTTACTTCAAAAAAATAGCGCCA
66 AAAACGCCACAAAAAATAATTTTACTTCAAAAAAATAGCG-CA
78947783 TTTTAGCATAGCAAAACAGTGTCGTTTTATTCGAAATGAAATAATTTTTTGCGGCGTTTTTATGA
1 TTTTAGCATAGCAAAACAGTGTCGTTTTATTCGAAATGAAATAATTTTTTGCGGCGTTTTTATGA
78947848 AAAACGCCACAAAAAATAATTTTACTTCAAAAAAATAGCGCCA
66 AAAACGCCACAAAAAATAATTTTACTTCAAAAAAATAGCG-CA
* *
78947891 TTTTAGCATAGCAAAACAGTGTCGTTTTATTCCAAATGAAATAATTTTTTTGCGGCATTTTTATG
1 TTTTAGCATAGCAAAACAGTGTCGTTTTATTCGAAATGAAATAA-TTTTTTGCGGCGTTTTTATG
78947956 AAAAACGCC
65 AAAAACGCC
78947965 GTAAAATGTA
Statistics
Matches: 179, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
108 151 0.84
109 28 0.16
ACGTcount: A:0.37, C:0.15, G:0.14, T:0.34
Consensus pattern (107 bp):
TTTTAGCATAGCAAAACAGTGTCGTTTTATTCGAAATGAAATAATTTTTTGCGGCGTTTTTATGA
AAAACGCCACAAAAAATAATTTTACTTCAAAAAAATAGCGCA
Found at i:78948017 original size:149 final size:149
Alignment explanation
Indices: 78947833--78948150 Score: 473
Period size: 148 Copynumber: 2.1 Consensus size: 149
78947823 ATAATTTTTT
* * *
78947833 GCGGCGTTTTTAT-GAAAAACGCCACAAAAAATAATTTTACTTCAAAAAAATAGCGCCATTTTAG
1 GCGGCGTTTTTATAAAAAAACACCACAAAAAATAATTTTACTT-AAAAAAATAGCGCCATTTTAA
* *
78947897 CATAGCAAAACAGTGTCGTTTTATTCCAAATGAAATAATTTTTTTGCGGCATTTTTATGAAAAA-
65 CATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTAT-AAAAAG
* *
78947961 CGCCGTAAAATG-TAAGCAATA
129 CGCCGCAAAA-GATAAGCAAAA
* * *
78947982 GCGGCGTTTTTATAAAAAAACACCAC-AAAATTAATTTTACTTTAAAAAATAGCGTCATTTTAAC
1 GCGGCGTTTTTATAAAAAAACACCACAAAAAATAATTTTACTTAAAAAAATAGCGCCATTTTAAC
*
78948046 ATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTATAAAAAGTG
66 ATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTATAAAAAGCG
78948111 CCGCAAAAGATAAGCAAAA
131 CCGCAAAAGATAAGCAAAA
*
78948130 GGGGCGTTTTTATAAAAAAAC
1 GCGGCGTTTTTATAAAAAAAC
78948151 CCAAAAGCTT
Statistics
Matches: 154, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
147 6 0.04
148 110 0.71
149 28 0.18
150 10 0.06
ACGTcount: A:0.41, C:0.14, G:0.14, T:0.31
Consensus pattern (149 bp):
GCGGCGTTTTTATAAAAAAACACCACAAAAAATAATTTTACTTAAAAAAATAGCGCCATTTTAAC
ATAACAAAACAGTGTCGTTTTATTCCAAATAAAATAATTTTTTTGCGGCATTTTTATAAAAAGCG
CCGCAAAAGATAAGCAAAA
Found at i:78951319 original size:88 final size:88
Alignment explanation
Indices: 78951170--78951373 Score: 408
Period size: 88 Copynumber: 2.3 Consensus size: 88
78951160 GAATGATTGA
78951170 CAAATTATGAAGGAATTAACGATTTCAAAAACGGGTCATCGTGCACCCTGCAAAAAAAGAGAGTA
1 CAAATTATGAAGGAATTAACGATTTCAAAAACGGGTCATCGTGCACCCTGCAAAAAAAGAGAGTA
78951235 GAAAACAGCAATAGGGGGAGTGG
66 GAAAACAGCAATAGGGGGAGTGG
78951258 CAAATTATGAAGGAATTAACGATTTCAAAAACGGGTCATCGTGCACCCTGCAAAAAAAGAGAGTA
1 CAAATTATGAAGGAATTAACGATTTCAAAAACGGGTCATCGTGCACCCTGCAAAAAAAGAGAGTA
78951323 GAAAACAGCAATAGGGGGAGTGG
66 GAAAACAGCAATAGGGGGAGTGG
78951346 CAAATTATGAAGGAATTAACGATTTCAA
1 CAAATTATGAAGGAATTAACGATTTCAA
78951374 TAATGAATGG
Statistics
Matches: 116, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
88 116 1.00
ACGTcount: A:0.43, C:0.14, G:0.25, T:0.19
Consensus pattern (88 bp):
CAAATTATGAAGGAATTAACGATTTCAAAAACGGGTCATCGTGCACCCTGCAAAAAAAGAGAGTA
GAAAACAGCAATAGGGGGAGTGG
Found at i:78952708 original size:43 final size:42
Alignment explanation
Indices: 78952658--78952926 Score: 313
Period size: 43 Copynumber: 6.3 Consensus size: 42
78952648 ATTATGTTTT
*
78952658 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTA
1 TAGCGGCGTTTGTG-GAAAAGCGCCGCTAAAGGTCATGGTCTA
* * * * *
78952701 TGGCGGCGTTTGAGGAAAAAGTGCCACTAAAGGTCATGGTCAA
1 TAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
78952744 TAGCGGCGTTTGTTGGAAAAGTGCCACTAATGGTCATGGTCTA
1 TAGCGGCGTTTG-TGGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
78952787 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAATGGTCATGGTCTT
1 TAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCATGGTCTA
* * *
78952830 TAGCGGCGTTTTTGGAAAAAGCGCCGCTAAAGGTTATGGTCTT
1 TAGCGGCGTTTGTGG-AAAAGCGCCGCTAAAGGTCATGGTCTA
* * * *
78952873 TGGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTCTT
1 TAGCGGCGTTTGT-GGAAAAGCGCCGCTAAAGGTCATGGTCTA
78952916 TAGCGGCGTTT
1 TAGCGGCGTTT
78952927 ATTTTTAAAA
Statistics
Matches: 199, Mismatches: 22, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
42 4 0.02
43 191 0.96
44 4 0.02
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (42 bp):
TAGCGGCGTTTGTGGAAAAGCGCCGCTAAAGGTCATGGTCTA
Found at i:78952763 original size:86 final size:86
Alignment explanation
Indices: 78952656--78952926 Score: 357
Period size: 86 Copynumber: 3.2 Consensus size: 86
78952646 AGATTATGTT
* * *
78952656 TTTAGCGGCGTTTG-TGAGAAAAGCGCCGCTAAAGGTCATAGTCTATGGCGGCGTTTGAGGAAAA
1 TTTAGCGGCGTTTGTTG-GAAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAA
* *
78952720 AGTGCCACTAAAGGTCATGGTC
65 AGCGCCGCTAAAGGTCATGGTC
** * * * * *
78952742 AATAGCGGCGTTTGTTGGAAAAGTGCCACTAATGGTCATGGTCTATAGCGGCGTTTTTGGGAAAA
1 TTTAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAAA
*
78952807 GCGCCGCTAATGGTCATGGTC
66 GCGCCGCTAAAGGTCATGGTC
* *
78952828 TTTAGCGGCGTTT-TTGGAAAAAGCGCCGCTAAAGGTTATGGTCTTTGGCGGCGTTTGTGGGAAA
1 TTTAGCGGCGTTTGTTGG-AAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAA
* *
78952892 AGCACCGCTAAAGGTCTTGGTC
65 AGCGCCGCTAAAGGTCATGGTC
78952914 TTTAGCGGCGTTT
1 TTTAGCGGCGTTT
78952927 ATTTTTAAAA
Statistics
Matches: 158, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
85 4 0.03
86 152 0.96
87 2 0.01
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (86 bp):
TTTAGCGGCGTTTGTTGGAAAAGCGCCGCTAAAGGTCATGGTCTATGGCGGCGTTTGTGGGAAAA
GCGCCGCTAAAGGTCATGGTC
Found at i:78952891 original size:129 final size:129
Alignment explanation
Indices: 78952658--78952926 Score: 349
Period size: 129 Copynumber: 2.1 Consensus size: 129
78952648 ATTATGTTTT
* *
78952658 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATGGCGGCGTTTGAGGAAAAAGT
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATAGCGGCGTTTGAGGAAAAAGC
* ** *
78952723 GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTTGGAAAAGTGCCACTAATGGTCATGGTCTA
66 GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTGGGAAAAGCACCACTAAAGGTCATGGTCTA
* * * * * **
78952787 TAGCGGCGTTTTTGGGAAAAGCGCCGCTAATGGTCATGGTCTTTAGCGGCGTTTTTGGAAAAAGC
1 TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATAGCGGCGTTTGAGGAAAAAGC
* * ** * * * *
78952852 GCCGCTAAAGGTTATGGTCTTTGGCGGCGTTTGTGGGAAAAGCACCGCTAAAGGTCTTGGTCTT
66 GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTGGGAAAAGCACCACTAAAGGTCATGGTCTA
78952916 TAGCGGCGTTT
1 TAGCGGCGTTT
78952927 ATTTTTAAAA
Statistics
Matches: 119, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
129 119 1.00
ACGTcount: A:0.23, C:0.17, G:0.32, T:0.28
Consensus pattern (129 bp):
TAGCGGCGTTTGTGAGAAAAGCGCCGCTAAAGGTCATAGTCTATAGCGGCGTTTGAGGAAAAAGC
GCCACTAAAGGTCATGGTCAATAGCGGCGTTTGTGGGAAAAGCACCACTAAAGGTCATGGTCTA
Found at i:78954976 original size:202 final size:202
Alignment explanation
Indices: 78954624--78955032 Score: 705
Period size: 202 Copynumber: 2.0 Consensus size: 202
78954614 AAATTTTATC
** * *
78954624 AAAATAATTTATGATTCGTGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTACTTA
1 AAAATAAAGTATGATTCATGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
*
78954689 AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTCAATTGTGAAAAATCTATTTGGTTGGAA
66 AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTAAATTGTGAAAAATCTATTTGGTTGGAA
*
78954754 TATTTATTTATTATTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAAAG
131 TATTTAATTATTATTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAAAG
78954819 ATGATGA
196 ATGATGA
*
78954826 AAAATAAAGTATGATTCATGAATGGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
1 AAAATAAAGTATGATTCATGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
*
78954891 AATTAGATAATTATGAAAAGCTTAATGATTAAGGGCTAAATTGTGAAAAATCTAATTT-GTTGGA
66 AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTAAATTGTGAAAAATCT-ATTTGGTTGGA
*
78954955 ATATTTAATTATT-TGTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTATAGAA
130 ATATTTAATTATTAT-TTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAA
78955019 AGATGATGA
194 AGATGATGA
78955028 AAAAT
1 AAAAT
78955033 CATCCATGTC
Statistics
Matches: 196, Mismatches: 9, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
201 1 0.01
202 191 0.97
203 4 0.02
ACGTcount: A:0.43, C:0.04, G:0.15, T:0.38
Consensus pattern (202 bp):
AAAATAAAGTATGATTCATGAATAGCATTATAGGGAAAGTTGAAGGACTAATTAATAGTTAATTA
AATTAGATAATTATGAAAAGCTTAATGATTAAGGACTAAATTGTGAAAAATCTATTTGGTTGGAA
TATTTAATTATTATTTATTTTAATTAATAAATTAAGTATATATTTTTATAGAATATTACAGAAAG
ATGATGA
Found at i:78963902 original size:2 final size:2
Alignment explanation
Indices: 78963895--78963925 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
78963885 GTCTGCTATT
*
78963895 TC TC TC TC TC CC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
78963926 TGAAGCTTAC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.52, G:0.00, T:0.48
Consensus pattern (2 bp):
TC
Found at i:78966439 original size:9 final size:9
Alignment explanation
Indices: 78966425--78966464 Score: 62
Period size: 9 Copynumber: 4.4 Consensus size: 9
78966415 GTAGTGATTC
78966425 AATTCGGTT
1 AATTCGGTT
*
78966434 AATTCGGAT
1 AATTCGGTT
78966443 AATTCGGTT
1 AATTCGGTT
*
78966452 AATTCGGGT
1 AATTCGGTT
78966461 AATT
1 AATT
78966465 TTTAACCAAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
9 28 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (9 bp):
AATTCGGTT
Found at i:78966448 original size:18 final size:18
Alignment explanation
Indices: 78966425--78966464 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
78966415 GTAGTGATTC
78966425 AATTCGGTTAATTCGGAT
1 AATTCGGTTAATTCGGAT
*
78966443 AATTCGGTTAATTCGGGT
1 AATTCGGTTAATTCGGAT
78966461 AATT
1 AATT
78966465 TTTAACCAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.28, C:0.10, G:0.23, T:0.40
Consensus pattern (18 bp):
AATTCGGTTAATTCGGAT
Found at i:78975539 original size:37 final size:37
Alignment explanation
Indices: 78975497--78975570 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
78975487 TTCTCTTTCC
*
78975497 CTACCCCTTCTTTCCCCGCACATTCTTTTGATGCCAA
1 CTACCCCTTCTTTCCCCACACATTCTTTTGATGCCAA
78975534 CTACCCCTTCTTTCCCCACACATTCTTTTGATGCCAA
1 CTACCCCTTCTTTCCCCACACATTCTTTTGATGCCAA
78975571 AGAGCATAGC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.18, C:0.41, G:0.07, T:0.35
Consensus pattern (37 bp):
CTACCCCTTCTTTCCCCACACATTCTTTTGATGCCAA
Found at i:78981258 original size:6 final size:6
Alignment explanation
Indices: 78981247--78981273 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
78981237 ACCCCTTTCT
78981247 TCCATC TCCATC TCCATC TCCATC TCC
1 TCCATC TCCATC TCCATC TCCATC TCC
78981274 TTTCTGCAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.52, G:0.00, T:0.33
Consensus pattern (6 bp):
TCCATC
Found at i:78988689 original size:40 final size:40
Alignment explanation
Indices: 78988645--78988906 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
78988635 GCTCCTCGTT
* *
78988645 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
78988685 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78988725 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78988764 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
78988803 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
78988842 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
78988883 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
78988907 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:78990003 original size:13 final size:13
Alignment explanation
Indices: 78989985--78990009 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
78989975 GGATGAGCAT
78989985 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
78989998 TTTTTTTTCTTT
1 TTTTTTTTCTTT
78990010 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:78993114 original size:40 final size:40
Alignment explanation
Indices: 78993037--78993214 Score: 195
Period size: 40 Copynumber: 4.5 Consensus size: 40
78993027 AAACCAAGTA
* *
78993037 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCC-CTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAAC-CCACACAAATG
*
78993076 CCTTCGGGACTTAGCCCGGTTATAGTAACCCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
* * *
78993116 CCTTCGGGACTTAGCCTGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
* * *
78993156 CCTTCGGGGCTTAGCCCGGA-ATTAGTCA-CTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACCCA-CACAAATG
*
78993196 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
78993215 TTATCATCTG
Statistics
Matches: 119, Mismatches: 15, Indels: 9
0.83 0.10 0.06
Matches are distributed among these distances:
39 17 0.14
40 102 0.86
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACCCACACAAATG
Found at i:78993169 original size:80 final size:79
Alignment explanation
Indices: 78993037--78993211 Score: 221
Period size: 80 Copynumber: 2.2 Consensus size: 79
78993027 AAACCAAGTA
* * *
78993037 CCTTCGGGATTTAGCCGGATATAGCTACTCCCTCAAATGCCTTCGGGACTTAGCCCGG-TTATAG
1 CCTTCGGGACTTAGCCGGATATAGCTACTCCCACAAATGCCTTCGGGACTTAGCCCGGAAT-TAG
78993101 TAACCCA-CACAAATG
65 TAA-CCAGCACAAATG
* *
78993116 CCTTCGGGACTTAGCCTGGATATAG-TAACTCGCACAAATGCCTTCGGGGCTTAGCCCGGAATTA
1 CCTTCGGGACTTAGCC-GGATATAGCT-ACTCCCACAAATGCCTTCGGGACTTAGCCCGGAATTA
* *
78993180 GTCACTAGCACAAATG
64 GTAACCAGCACAAATG
*
78993196 CCTTCGAGACTTAGCC
1 CCTTCGGGACTTAGCC
78993212 CGGTTATCAT
Statistics
Matches: 84, Mismatches: 8, Indels: 7
0.85 0.08 0.07
Matches are distributed among these distances:
79 18 0.21
80 65 0.77
81 1 0.01
ACGTcount: A:0.25, C:0.29, G:0.22, T:0.25
Consensus pattern (79 bp):
CCTTCGGGACTTAGCCGGATATAGCTACTCCCACAAATGCCTTCGGGACTTAGCCCGGAATTAGT
AACCAGCACAAATG
Found at i:78996123 original size:43 final size:42
Alignment explanation
Indices: 78996026--78996125 Score: 112
Period size: 42 Copynumber: 2.4 Consensus size: 42
78996016 GATTTGAGAT
* *
78996026 TTACATGTAAGACCATGTCTGGGACATCGACCTCGTATATGA
1 TTACATGTAAGACCATGTCTGGGACATCGACATAGTATATGA
* * * * *
78996068 TTTCGTGTAAGACCCTGTCTGGGACAGT-GGCATAGATATTTGA
1 TTACATGTAAGACCATGTCTGGGACA-TCGACATAG-TATATGA
78996111 TTACATGTAAGACCA
1 TTACATGTAAGACCA
78996126 CAACTAGGAC
Statistics
Matches: 46, Mismatches: 10, Indels: 3
0.78 0.17 0.05
Matches are distributed among these distances:
42 27 0.59
43 19 0.41
ACGTcount: A:0.28, C:0.19, G:0.23, T:0.30
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATCGACATAGTATATGA
Found at i:79002118 original size:40 final size:40
Alignment explanation
Indices: 79002087--79002336 Score: 292
Period size: 40 Copynumber: 6.3 Consensus size: 40
79002077 GGACTAAGAT
* *
79002087 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATATCAAA-TCCGGGTTAAGTC
* *
79002127 CCGAAGGCCTTTGTGCGAGATA-CTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
* *
79002167 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* *
79002207 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * *
79002247 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
* * * * *
79002287 CCGAAGGCATT-GTGTGAGTTA-CTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATATC-AAATCCGGGTTAAGTC
79002326 CCGAAGGCATT
1 CCGAAGGCATT
79002337 TGAACGAGGA
Statistics
Matches: 194, Mismatches: 13, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 33 0.17
40 158 0.81
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGATATCAAATCCGGGTTAAGTC
Found at i:79002171 original size:80 final size:79
Alignment explanation
Indices: 79002034--79002336 Score: 342
Period size: 80 Copynumber: 3.8 Consensus size: 79
79002024 TTGAATGCTG
* * * * * **
79002034 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
79002097 TTGTGCGAGATACAAA
64 TCGTGCGAGTTATAAA
* *
79002113 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
79002178 CGTGCGAGTTATTAAA
65 CGTGCGAGTTA-TAAA
* * *
79002194 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
79002259 GTGCGAGTTGTTAAA
66 GTGCGAGTT-ATAAA
* * * * * *
79002274 TCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
79002337 TGAACGAGGA
Statistics
Matches: 192, Mismatches: 27, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
79 36 0.19
80 145 0.76
81 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATAAA
Found at i:79002250 original size:120 final size:119
Alignment explanation
Indices: 79002034--79002336 Score: 358
Period size: 120 Copynumber: 2.5 Consensus size: 119
79002024 TTGAATGCTG
* * * * * *
79002034 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
* * *
79002098 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
64 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* *
79002154 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* * * * **
79002219 GTGCGAGTTATTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* * * * *
79002274 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
79002337 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
119 35 0.22
120 115 0.73
121 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:79010110 original size:40 final size:39
Alignment explanation
Indices: 79010079--79010328 Score: 286
Period size: 40 Copynumber: 6.3 Consensus size: 39
79010069 GGACTAAGAT
* *
79010079 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
79010119 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
79010159 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* **
79010199 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* **
79010239 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
79010279 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
79010318 CCGAAGGCATT
1 CCGAAGGCATT
79010329 TGAACGAGGA
Statistics
Matches: 193, Mismatches: 13, Indels: 9
0.90 0.06 0.04
Matches are distributed among these distances:
39 32 0.17
40 158 0.82
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:79010163 original size:80 final size:79
Alignment explanation
Indices: 79010026--79010328 Score: 342
Period size: 80 Copynumber: 3.8 Consensus size: 79
79010016 TTGAATGCTG
* * * * * **
79010026 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
* * *
79010089 TTGTGCGAGATACAAA
64 TCGTGCGAGTTATAAA
* *
79010105 TTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 -TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
79010170 CGTGCGAGTTATTAAA
65 CGTGCGAGTTA-TAAA
* * **
79010186 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
*
79010251 GTGCGAGTTGTTAAA
66 GTGCGAGTT-ATAAA
* * * * *
79010266 TCCGGGTTAAGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
79010329 TGAACGAGGA
Statistics
Matches: 191, Mismatches: 28, Indels: 9
0.84 0.12 0.04
Matches are distributed among these distances:
79 35 0.18
80 145 0.76
81 11 0.06
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTATAAA
Found at i:79010242 original size:120 final size:119
Alignment explanation
Indices: 79010026--79010328 Score: 358
Period size: 120 Copynumber: 2.5 Consensus size: 119
79010016 TTGAATGCTG
* * * * * *
79010026 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTAATAAATCCGGGCTAAG-TCCCGAAGGCATT
* * *
79010090 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
64 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* *
79010146 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTC
* ** * * **
79010211 GTGCGAGTTGTTAAA-TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
* * * *
79010266 TCCGGGTTAAGTCCCGAAGGCATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATT
79010329 TGAACGAGGA
Statistics
Matches: 157, Mismatches: 23, Indels: 7
0.84 0.12 0.04
Matches are distributed among these distances:
119 35 0.22
120 115 0.73
121 7 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTAATAAATCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTCGTGCGAGATACTAAA
Found at i:79012757 original size:27 final size:27
Alignment explanation
Indices: 79012727--79012789 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
79012717 CCATAAACGG
*
79012727 GTAAATGTGGCAAAGCCACCAGTAATA
1 GTAAATGTGGCAAAGCCACCAGTAACA
* * **
79012754 GTAATTGTGGCATAGTTACCAGTAACA
1 GTAAATGTGGCAAAGCCACCAGTAACA
*
79012781 GTGAATGTG
1 GTAAATGTG
79012790 ACATAGTACT
Statistics
Matches: 29, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.35, C:0.14, G:0.25, T:0.25
Consensus pattern (27 bp):
GTAAATGTGGCAAAGCCACCAGTAACA
Found at i:79012794 original size:27 final size:27
Alignment explanation
Indices: 79012744--79012796 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
79012734 TGGCAAAGCC
* *
79012744 ACCAGTAATAGTAATTGTGGCATAGTT
1 ACCAGTAACAGTAATTGTGACATAGTT
79012771 ACCAGTAACAGTGAA-TGTGACATAGT
1 ACCAGTAACAGT-AATTGTGACATAGT
79012797 ACTAGTACAA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 21 0.91
28 2 0.09
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (27 bp):
ACCAGTAACAGTAATTGTGACATAGTT
Found at i:79012975 original size:27 final size:27
Alignment explanation
Indices: 79012945--79013090 Score: 195
Period size: 27 Copynumber: 5.4 Consensus size: 27
79012935 AGGGCTACTC
* *
79012945 GTCATTTTACCCTAC-AGAGGCATTACA
1 GTCATTTTACCCTACAAG-GGTATTACG
*
79012972 GTCATTTTATCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* *
79012999 GTCATTTTACCCTACACGGGTATTATG
1 GTCATTTTACCCTACAAGGGTATTACG
*
79013026 GTCATTTTATCCTACAAGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
* * *
79013053 ATTATTTTACCCTATAAGGGTATTACG
1 GTCATTTTACCCTACAAGGGTATTACG
79013080 GTCATTTTACC
1 GTCATTTTACC
79013091 TATTTTGGGG
Statistics
Matches: 103, Mismatches: 15, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
27 101 0.98
28 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.16, T:0.37
Consensus pattern (27 bp):
GTCATTTTACCCTACAAGGGTATTACG
Found at i:79016788 original size:33 final size:33
Alignment explanation
Indices: 79016722--79016825 Score: 94
Period size: 33 Copynumber: 3.3 Consensus size: 33
79016712 ACAGTGCATG
* * *
79016722 CAGTAACAGTCTAGGCCTGAGCCCTACT-CAGTAA
1 CAGT-ACAGTCTGGGCCTAAGCCCTA-TATAGTAA
*
79016756 CAGTACAGTCTGGGCCTTAGCCCTATATAGTAA
1 CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
* *
79016789 CAGT---G--TGGGCCTAAGCCCAAAATAGTAA
1 CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
79016817 CAGTACAGT
1 CAGTACAGT
79016826 GTAATGCAAT
Statistics
Matches: 59, Mismatches: 6, Indels: 12
0.77 0.08 0.16
Matches are distributed among these distances:
28 24 0.41
30 1 0.02
31 1 0.02
32 1 0.02
33 28 0.47
34 4 0.07
ACGTcount: A:0.31, C:0.25, G:0.22, T:0.22
Consensus pattern (33 bp):
CAGTACAGTCTGGGCCTAAGCCCTATATAGTAA
Found at i:79016797 original size:28 final size:28
Alignment explanation
Indices: 79016760--79016820 Score: 86
Period size: 28 Copynumber: 2.2 Consensus size: 28
79016750 CAGTAACAGT
* * *
79016760 ACAGTCTGGGCCTTAGCCCTATATAGTA
1 ACAGTCTGGGCCTAAGCCCAAAATAGTA
*
79016788 ACAGTGTGGGCCTAAGCCCAAAATAGTA
1 ACAGTCTGGGCCTAAGCCCAAAATAGTA
79016816 ACAGT
1 ACAGT
79016821 ACAGTGTAAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 29 1.00
ACGTcount: A:0.31, C:0.23, G:0.23, T:0.23
Consensus pattern (28 bp):
ACAGTCTGGGCCTAAGCCCAAAATAGTA
Found at i:79017023 original size:27 final size:25
Alignment explanation
Indices: 79016987--79017062 Score: 89
Period size: 27 Copynumber: 2.9 Consensus size: 25
79016977 ACAATAAATG
*
79016987 TGACAAAGCCACCAGTATCAGTAATTA
1 TGACATAGCCACCAGTA-CAGTAA-TA
*
79017014 TGGCATAGCCACCAGTAACAGTGAATA
1 TGACATAGCCACCAGT-ACAGT-AATA
*
79017041 TGACATAGTCACCAGTACAGTA
1 TGACATAGCCACCAGTACAGTA
79017063 CTTCATATCA
Statistics
Matches: 43, Mismatches: 4, Indels: 6
0.81 0.08 0.11
Matches are distributed among these distances:
25 1 0.02
26 5 0.12
27 34 0.79
28 3 0.07
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.21
Consensus pattern (25 bp):
TGACATAGCCACCAGTACAGTAATA
Found at i:79017225 original size:27 final size:27
Alignment explanation
Indices: 79017195--79017393 Score: 168
Period size: 27 Copynumber: 7.4 Consensus size: 27
79017185 AGGGCTACTC
* **
79017195 GTCATTTTGCCATACAGGGGTATTATA
1 GTCATTTTACCATACAGGGGTATTACG
* *
79017222 GTCATTTTACCCA-ATAGGGGCATTACG
1 GTCATTTTA-CCATACAGGGGTATTACG
79017249 GTCATTTTAACC-TACAGGGGTATTACG
1 GTCATTTT-ACCATACAGGGGTATTACG
* * *
79017276 GCCATTTTACCCTACAGGGGTGTTACG
1 GTCATTTTACCATACAGGGGTATTACG
* * *
79017303 GTTATTTTACCCTACAGGGGTATTATG
1 GTCATTTTACCATACAGGGGTATTACG
* * * * **
79017330 GTCATTTTACCTTATAAGGGTATCAAA
1 GTCATTTTACCATACAGGGGTATTACG
* * *
79017357 GTTATTTTACCCTAGAGGGGTATTACG
1 GTCATTTTACCATACAGGGGTATTACG
* *
79017384 ATTATTTTAC
1 GTCATTTTAC
79017394 AGTTATTTTG
Statistics
Matches: 140, Mismatches: 28, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
26 3 0.02
27 133 0.95
28 4 0.03
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACG
Found at i:79017333 original size:81 final size:81
Alignment explanation
Indices: 79017197--79017393 Score: 207
Period size: 81 Copynumber: 2.4 Consensus size: 81
79017187 GGCTACTCGT
* * ** * *
79017197 CATTTTGCCATACAGGGGTATTATAGTCATTTTACCCAATAGGGGCATTACGGTCATTTTAACC-
1 CATTTTACCCTACAGGGGTATTACGGTTATTTTACCCAACAGGGGCATTACGGTCATTTT-ACCT
* * **
79017261 TACAGGGGTATTACGGC
65 TACAAGGGTATCAAAGC
* * * *
79017278 CATTTTACCCTACAGGGGTGTTACGGTTATTTTACCCTACAGGGGTATTATGGTCATTTTACCTT
1 CATTTTACCCTACAGGGGTATTACGGTTATTTTACCCAACAGGGGCATTACGGTCATTTTACCTT
* *
79017343 ATAAGGGTATCAAAGT
66 ACAAGGGTATCAAAGC
* * *
79017359 TATTTTACCCTAGAGGGGTATTACGATTATTTTAC
1 CATTTTACCCTACAGGGGTATTACGGTTATTTTAC
79017394 AGTTATTTTG
Statistics
Matches: 95, Mismatches: 20, Indels: 2
0.81 0.17 0.02
Matches are distributed among these distances:
80 3 0.03
81 92 0.97
ACGTcount: A:0.25, C:0.18, G:0.21, T:0.36
Consensus pattern (81 bp):
CATTTTACCCTACAGGGGTATTACGGTTATTTTACCCAACAGGGGCATTACGGTCATTTTACCTT
ACAAGGGTATCAAAGC
Found at i:79017361 original size:54 final size:54
Alignment explanation
Indices: 79017198--79017381 Score: 215
Period size: 54 Copynumber: 3.4 Consensus size: 54
79017188 GCTACTCGTC
* * * * * *
79017198 ATTTTGCCATACAGGGGTATTATAGTCATTTTACCCAATAGGGGCATTACGGTC
1 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
* * * * *
79017252 ATTTTAACCTACAGGGGTATTACGGCCATTTTACCCTACAGGGGTGTTACGGTT
1 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
* * * **
79017306 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCTTATAAGGGTATCAAAGTT
1 ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
*
79017360 ATTTTACCCTAGAGGGGTATTA
1 ATTTTACCCTACAGGGGTATTA
79017382 CGATTATTTT
Statistics
Matches: 108, Mismatches: 22, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 108 1.00
ACGTcount: A:0.26, C:0.17, G:0.22, T:0.35
Consensus pattern (54 bp):
ATTTTACCCTACAGGGGTATTATGGTCATTTTACCCTATAGGGGTATTACGGTT
Found at i:79021116 original size:27 final size:26
Alignment explanation
Indices: 79021086--79021157 Score: 63
Period size: 27 Copynumber: 2.7 Consensus size: 26
79021076 AGCATAGCTG
79021086 CTAGAAATAGTAAATGTGGCAAAGCCA
1 CTAG-AATAGTAAATGTGGCAAAGCCA
* * * *
79021113 CTAGTATCAGTAATTGGGGCATAGCCA
1 CTAGAAT-AGTAAATGTGGCAAAGCCA
* *
79021140 CCAGTAACAGTAAATGTG
1 CTAG-AATAGTAAATGTG
79021158 ACATAGTCAC
Statistics
Matches: 34, Mismatches: 9, Indels: 4
0.72 0.19 0.09
Matches are distributed among these distances:
26 2 0.06
27 31 0.91
28 1 0.03
ACGTcount: A:0.38, C:0.17, G:0.24, T:0.22
Consensus pattern (26 bp):
CTAGAATAGTAAATGTGGCAAAGCCA
Found at i:79021162 original size:27 final size:27
Alignment explanation
Indices: 79021094--79021169 Score: 89
Period size: 27 Copynumber: 2.8 Consensus size: 27
79021084 TGCTAGAAAT
* * *
79021094 AGTAAATGTGGCAAAGCCACTAGTATC
1 AGTAAATGTGGCATAGCCACCAGTAAC
* *
79021121 AGTAATTGGGGCATAGCCACCAGTAAC
1 AGTAAATGTGGCATAGCCACCAGTAAC
* *
79021148 AGTAAATGTGACATAGTCACCA
1 AGTAAATGTGGCATAGCCACCA
79021170 ACACAGTACT
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.21
Consensus pattern (27 bp):
AGTAAATGTGGCATAGCCACCAGTAAC
Found at i:79021356 original size:27 final size:27
Alignment explanation
Indices: 79021314--79021662 Score: 358
Period size: 27 Copynumber: 13.0 Consensus size: 27
79021304 AAGGCTACTC
* * *
79021314 GTCATTTTTCCATACAGGGGTATCACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
79021341 GTCATTTTACCGTACAGGGGCATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
** *
79021368 GTTGTTTTACCCTACAGGGATATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
79021395 TTCATTTTACCCGAAAGGGGTGTTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * *
79021422 ATCGTTTTACCCTACATGGGTATTGCG
1 GTCATTTTACCCTACAGGGGTATTACG
*
79021449 GTCATTTTACCCTACAGGGGTATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
79021476 GTCATTTTACCCTACTGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *** *
79021503 GTTATTTTACTAAATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * *
79021530 ATCATTTTATCCT-CAAGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* * * * *
79021556 ATTATTTTACCCCACAGGGGGATTACA
1 GTCATTTTACCCTACAGGGGTATTACG
*
79021583 GTCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
79021610 ATCATTTTACCCTATAGGGGTATTACG
1 GTCATTTTACCCTACAGGGGTATTACG
* *
79021637 ATCATTTTACCTTACAGGGGTATTAC
1 GTCATTTTACCCTACAGGGGTATTAC
79021663 AGTTATTATA
Statistics
Matches: 260, Mismatches: 61, Indels: 2
0.80 0.19 0.01
Matches are distributed among these distances:
26 21 0.08
27 239 0.92
ACGTcount: A:0.24, C:0.19, G:0.21, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCCTACAGGGGTATTACG
Found at i:79025456 original size:27 final size:26
Alignment explanation
Indices: 79025397--79025469 Score: 74
Period size: 27 Copynumber: 2.7 Consensus size: 26
79025387 AGCTGCCAGA
* * *
79025397 AACAGTAGCTGTGGCAAAGCCACCAGT
1 AACAGTA-ATGTGGCATAGCCACCAAT
*
79025424 AGCAGTAATTGTGGCATAGCCACCAAT
1 AACAGTAA-TGTGGCATAGCCACCAAT
*
79025451 AACAGTCAATGTGACATAG
1 AACAGT-AATGTGGCATAG
79025470 TCACTAGTAC
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
27 36 0.95
28 2 0.05
ACGTcount: A:0.36, C:0.22, G:0.23, T:0.19
Consensus pattern (26 bp):
AACAGTAATGTGGCATAGCCACCAAT
Found at i:79025847 original size:27 final size:27
Alignment explanation
Indices: 79025637--79025846 Score: 260
Period size: 27 Copynumber: 7.8 Consensus size: 27
79025627 TGCAATATAG
* *
79025637 GGGTATCACAGTCATTTTACCCTACAA
1 GGGTATTACGGTCATTTTACCCTACAA
* * *
79025664 GGGCATTACGGTCGTTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAA
* *
79025691 GGGTATTACGTTCATTTTACCCAAC-A
1 GGGTATTACGGTCATTTTACCCTACAA
* *
79025717 GGAGTGTTACGGTCATTTTACCCTACAT
1 GG-GTATTACGGTCATTTTACCCTACAA
* *
79025745 GGGTATTACGATCATTTTACCCTACGA
1 GGGTATTACGGTCATTTTACCCTACAA
* *
79025772 GGGTATTACGGTTATTTTACCCTACAG
1 GGGTATTACGGTCATTTTACCCTACAA
* *
79025799 GGGTATTATGGTCATTTTACCTTACAA
1 GGGTATTACGGTCATTTTACCCTACAA
*
79025826 GGTTATTACGGTCATTTTACC
1 GGGTATTACGGTCATTTTACC
79025847 TATTTTGGGG
Statistics
Matches: 153, Mismatches: 28, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 149 0.97
28 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.20, T:0.35
Consensus pattern (27 bp):
GGGTATTACGGTCATTTTACCCTACAA
Found at i:79031743 original size:50 final size:47
Alignment explanation
Indices: 79031679--79031813 Score: 134
Period size: 45 Copynumber: 2.9 Consensus size: 47
79031669 AGACTCAGTA
*
79031679 CAACTCATATGAGCTTACCGATATATCAGCTCGAAAGAGCTTATTGTTTT
1 CAACTCATATGAGCTTACC-AT-T-TCAGCTCGAAAGAGCTTAATGTTTT
* *
79031729 CAACTCAT-TGGAGCTTACCATTTCAGCTCGTATGAGCTTAATG-TTT
1 CAACTCATAT-GAGCTTACCATTTCAGCTCGAAAGAGCTTAATGTTTT
* * * *
79031775 -AGCTCGATA-GAGCTTACCGTTTTAGCTCGATAGAGCTTA
1 CAACTC-ATATGAGCTTACCATTTCAGCTCGAAAGAGCTTA
79031814 CAGTTTATTA
Statistics
Matches: 73, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
45 29 0.40
46 5 0.07
47 18 0.25
48 1 0.01
49 3 0.04
50 17 0.23
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.34
Consensus pattern (47 bp):
CAACTCATATGAGCTTACCATTTCAGCTCGAAAGAGCTTAATGTTTT
Found at i:79031765 original size:23 final size:23
Alignment explanation
Indices: 79031739--79031842 Score: 99
Period size: 23 Copynumber: 4.4 Consensus size: 23
79031729 CAACTCATTG
*
79031739 GAGCTTACCATTTCAGCTCG-TA
1 GAGCTTACCATTTTAGCTCGATA
79031761 TGAGCTTA--ATGTTTAGCTCGATA
1 -GAGCTTACCAT-TTTAGCTCGATA
*
79031784 GAGCTTACCGTTTTAGCTCGATA
1 GAGCTTACCATTTTAGCTCGATA
*
79031807 GAGCTTA-CAGTTTATTAGCTCAGAAA
1 GAGCTTACCA--TT-TTAGCTC-GATA
79031833 GAGCTTACCA
1 GAGCTTACCA
79031843 ATCATGGCTC
Statistics
Matches: 68, Mismatches: 4, Indels: 14
0.79 0.05 0.16
Matches are distributed among these distances:
21 2 0.03
22 16 0.24
23 28 0.41
24 3 0.04
25 7 0.10
26 10 0.15
27 2 0.03
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (23 bp):
GAGCTTACCATTTTAGCTCGATA
Found at i:79031803 original size:45 final size:49
Alignment explanation
Indices: 79031739--79031842 Score: 128
Period size: 45 Copynumber: 2.2 Consensus size: 49
79031729 CAACTCATTG
*
79031739 GAGCTTACCATTTCAGCTCG-TATGAGCTTA-A-TGT-TTAGCTC-GATA
1 GAGCTTACCATTTCAGCTCGATA-GAGCTTACAGTGTATTAGCTCAGAAA
* * *
79031784 GAGCTTACCGTTTTAGCTCGATAGAGCTTACAGTTTATTAGCTCAGAAA
1 GAGCTTACCATTTCAGCTCGATAGAGCTTACAGTGTATTAGCTCAGAAA
79031833 GAGCTTACCA
1 GAGCTTACCA
79031843 ATCATGGCTC
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
45 25 0.51
46 3 0.06
47 2 0.04
48 7 0.14
49 12 0.24
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.33
Consensus pattern (49 bp):
GAGCTTACCATTTCAGCTCGATAGAGCTTACAGTGTATTAGCTCAGAAA
Found at i:79047253 original size:40 final size:40
Alignment explanation
Indices: 79047198--79047338 Score: 194
Period size: 40 Copynumber: 3.5 Consensus size: 40
79047188 TATTCGGATG
79047198 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
** * *
79047238 ATATCCGGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
79047278 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
79047318 ATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
79047339 ATACTTGGGT
Statistics
Matches: 88, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 12 0.14
40 76 0.86
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:79051234 original size:49 final size:49
Alignment explanation
Indices: 79051165--79052166 Score: 1890
Period size: 49 Copynumber: 20.6 Consensus size: 49
79051155 GATAATTGTG
79051165 ATGTG-AA-TGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051212 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051261 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051310 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051359 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051408 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051457 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051506 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051555 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051604 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051653 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051702 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051751 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051800 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051849 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051898 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051947 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79051996 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
79052045 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
79052094 ATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATGG
1 ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
79052141 ATGTGATAGTGTATA-A-ATGTGATAAG
1 ATGTGAAAGTGTATATATATGTGATAAG
79052167 TCCCGAAGGG
Statistics
Matches: 941, Mismatches: 10, Indels: 8
0.98 0.01 0.01
Matches are distributed among these distances:
47 52 0.06
48 3 0.00
49 886 0.94
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.30
Consensus pattern (49 bp):
ATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:79053876 original size:165 final size:165
Alignment explanation
Indices: 79053582--79053886 Score: 380
Period size: 165 Copynumber: 1.8 Consensus size: 165
79053572 GTGAAACTCA
*
79053582 AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAACTATCTGGAAAAATTTAAAATGGACT
1 AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAACTATCTGGAAAAATTTAAAATGAACT
* * * * * *
79053647 GCGATAGTAAGCGAATTTAGTCTGTGAACCCCTCGTGTCTGACTCCGGCAACGGTCTCGGGTACG
66 GCGATAATAAACGAATTAAGTCCGTGAACACCTCGTGTCTGACTCCGGCAACGGTCTAGGGTACG
*
79053712 GGGTGTTACAATCAATTTTTGAGTTTTGGAACTTG
131 GGGCGTTACAATCAATTTTTGAGTTTTGGAACTTG
* * * * * * * *
79053747 AGATATGATTTTTGAGGTGACTGTGACGCAGTTAGCTAGCTTGTCTGG-AAATTTTAAAATGAAC
1 AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAAC-TATCTGGAAAAATTTAAAATGAAC
* * * * * *
79053811 TGTG-TAAATAAATGAATTAAGTCCGTTAACACCTCGTGTTTGACTCTGGCAATGGTCTAGGGTA
65 TGCGAT-AATAAACGAATTAAGTCCGTGAACACCTCGTGTCTGACTCCGGCAACGGTCTAGGGTA
79053875 CGGGGCGTTACA
129 CGGGGCGTTACA
79053887 GCACTCGTTG
Statistics
Matches: 116, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
164 1 0.01
165 109 0.94
166 6 0.05
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.31
Consensus pattern (165 bp):
AGATATGATTTTTAAGGTGACAGCGACACAGTTAGCCAACTATCTGGAAAAATTTAAAATGAACT
GCGATAATAAACGAATTAAGTCCGTGAACACCTCGTGTCTGACTCCGGCAACGGTCTAGGGTACG
GGGCGTTACAATCAATTTTTGAGTTTTGGAACTTG
Found at i:79055164 original size:66 final size:66
Alignment explanation
Indices: 79055094--79055233 Score: 212
Period size: 66 Copynumber: 2.1 Consensus size: 66
79055084 TGGAAAACAT
* * *
79055094 TCAATAATGATTAGGGTTTTCTTCAAAATGGAGAAAT-GAAATCATTTGGAAATGAATATGGTTT
1 TCAATAATGATTAGGGCTTTCTCCAAAATGGAGAAATAG-AATCATTTGGAAATAAATATGGTTT
79055158 TC
65 TC
* *
79055160 TCAATAATGATTATGGCTTTCTCCAAAATGGAGAAATAGAATCATTTGGAAATAAATGTGGTTTT
1 TCAATAATGATTAGGGCTTTCTCCAAAATGGAGAAATAGAATCATTTGGAAATAAATATGGTTTT
79055225 C
66 C
79055226 TCAA-AATG
1 TCAATAATG
79055234 GAAATGAAAA
Statistics
Matches: 68, Mismatches: 5, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
65 4 0.06
66 63 0.93
67 1 0.01
ACGTcount: A:0.37, C:0.09, G:0.19, T:0.35
Consensus pattern (66 bp):
TCAATAATGATTAGGGCTTTCTCCAAAATGGAGAAATAGAATCATTTGGAAATAAATATGGTTTT
C
Found at i:79055189 original size:21 final size:20
Alignment explanation
Indices: 79055143--79055189 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 20
79055133 AATCATTTGG
*
79055143 AAATGAATATGGTTTTCTCA
1 AAATGAATATGGCTTTCTCA
*
79055163 ATAATGATTATGGCTTTCTCCA
1 A-AATGAATATGGCTTTCT-CA
79055185 AAATG
1 AAATG
79055190 GAGAAATAGA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
20 1 0.04
21 19 0.83
22 3 0.13
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (20 bp):
AAATGAATATGGCTTTCTCA
Found at i:79057370 original size:39 final size:40
Alignment explanation
Indices: 79057325--79057496 Score: 204
Period size: 40 Copynumber: 4.3 Consensus size: 40
79057315 GCTCCTCGTT
* *
79057325 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
**
79057365 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* * * *
79057404 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
* * * * *
79057444 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCACA
79057484 CAAATGCCTTCGG
1 CAAATGCCTTCGG
79057497 ATCTTAGTTC
Statistics
Matches: 117, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 35 0.30
40 78 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCACA
Found at i:79061205 original size:31 final size:31
Alignment explanation
Indices: 79061167--79061229 Score: 126
Period size: 31 Copynumber: 2.0 Consensus size: 31
79061157 TCATGTCCAA
79061167 ATCACCAACTTATATAAATAAGGTATAACAT
1 ATCACCAACTTATATAAATAAGGTATAACAT
79061198 ATCACCAACTTATATAAATAAGGTATAACAT
1 ATCACCAACTTATATAAATAAGGTATAACAT
79061229 A
1 A
79061230 CTCAACAAAT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.49, C:0.16, G:0.06, T:0.29
Consensus pattern (31 bp):
ATCACCAACTTATATAAATAAGGTATAACAT
Found at i:79062331 original size:20 final size:18
Alignment explanation
Indices: 79062308--79062344 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
79062298 ACCAAACATG
79062308 AATTAAATCTAAGACATATT
1 AATTAAAT-TAA-ACATATT
79062328 AATTAAATTAAACATAT
1 AATTAAATTAAACATAT
79062345 CAACATCACA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 3 0.18
20 8 0.47
ACGTcount: A:0.54, C:0.08, G:0.03, T:0.35
Consensus pattern (18 bp):
AATTAAATTAAACATATT
Found at i:79063923 original size:5 final size:5
Alignment explanation
Indices: 79063913--79063938 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
79063903 GTACATATGC
79063913 TCTTT TCTTT TCTTT TCTTT TCTTT T
1 TCTTT TCTTT TCTTT TCTTT TCTTT T
79063939 TTCCCTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (5 bp):
TCTTT
Found at i:79066951 original size:30 final size:30
Alignment explanation
Indices: 79066894--79066951 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
79066884 TGCCTTTGAA
** * *
79066894 AATAGTTACAAAAAGAGGCATCTAATTTCT
1 AATAGTTACAAAAAGAGAAACCAAATTTCT
*
79066924 AATATTTACAAAAAGAGAAACCAAATTT
1 AATAGTTACAAAAAGAGAAACCAAATTT
79066952 TGAAAATAGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.50, C:0.12, G:0.10, T:0.28
Consensus pattern (30 bp):
AATAGTTACAAAAAGAGAAACCAAATTTCT
Found at i:79071012 original size:27 final size:26
Alignment explanation
Indices: 79070975--79071086 Score: 143
Period size: 27 Copynumber: 4.2 Consensus size: 26
79070965 AGCATGGCTG
* *
79070975 CCAGAACAGATAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
79071001 CCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
79071029 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
79071056 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
79071083 CCAG
1 CCAG
79071087 GATGCTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 7
0.85 0.07 0.08
Matches are distributed among these distances:
26 6 0.08
27 54 0.71
28 16 0.21
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:79071039 original size:54 final size:54
Alignment explanation
Indices: 79070975--79071086 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
79070965 AGCATGGCTG
* *
79070975 CCAGAACAGATA-ATGTGACAGAGTCACCAGATACAGATAATCGTGGTAGAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGAT-CAGATAATCGTGGCAGAGCCA
* * *
79071029 CCAGAACAGATATATGTGGCAGAGCCACCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
79071083 CCAG
1 CCAG
79071087 GATGCTTCCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.37, C:0.22, G:0.24, T:0.17
Consensus pattern (54 bp):
CCAGAACAGATATATGTGACAGAGCCACCAGATCAGATAATCGTGGCAGAGCCA
Found at i:79072549 original size:24 final size:24
Alignment explanation
Indices: 79072514--79072590 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
79072504 CCAACACTGT
* *
79072514 TCTCCCTAATCAGCTTCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
79072538 TCTCCCTTATCAGCTCCTAAATCC
1 TCTCCCTTATCAGCTCCTAAATCC
* * *
79072562 TCTCCCTTATTAGCTCCCAAATCT
1 TCTCCCTTATCAGCTCCTAAATCC
79072586 TCTCC
1 TCTCC
79072591 TGACAGCCTT
Statistics
Matches: 48, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 48 1.00
ACGTcount: A:0.21, C:0.40, G:0.04, T:0.35
Consensus pattern (24 bp):
TCTCCCTTATCAGCTCCTAAATCC
Found at i:79076067 original size:31 final size:31
Alignment explanation
Indices: 79076032--79076092 Score: 122
Period size: 31 Copynumber: 2.0 Consensus size: 31
79076022 ATACTTTAAC
79076032 AAGTGCAATACTCTTATTCCTCAATTGTTTA
1 AAGTGCAATACTCTTATTCCTCAATTGTTTA
79076063 AAGTGCAATACTCTTATTCCTCAATTGTTT
1 AAGTGCAATACTCTTATTCCTCAATTGTTT
79076093 TACTTCTCGA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.28, C:0.20, G:0.10, T:0.43
Consensus pattern (31 bp):
AAGTGCAATACTCTTATTCCTCAATTGTTTA
Found at i:79082241 original size:49 final size:49
Alignment explanation
Indices: 79082144--79082268 Score: 153
Period size: 49 Copynumber: 2.5 Consensus size: 49
79082134 AGATGCCGAC
* * * * *
79082144 GCCATGTCCAAGACATGGTCTTACACAGGCTTTCATGTAGCGAGGTCGAT
1 GCCATGTCCCAGACA-GGTCTTACACTGGCTCTCATCTACCGAGGTCGAT
* **
79082194 GCTATGTCTTAGACAGGTCTTACACTGGCTCTCATCTACCG-GTGTCGAT
1 GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTACCGAG-GTCGAT
79082243 GCCATGTCCCAGACAGGTCTTACACT
1 GCCATGTCCCAGACAGGTCTTACACT
79082269 AACACACCTC
Statistics
Matches: 64, Mismatches: 10, Indels: 3
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.02
49 51 0.80
50 12 0.19
ACGTcount: A:0.22, C:0.27, G:0.23, T:0.28
Consensus pattern (49 bp):
GCCATGTCCCAGACAGGTCTTACACTGGCTCTCATCTACCGAGGTCGAT
Found at i:79082355 original size:48 final size:47
Alignment explanation
Indices: 79082289--79082503 Score: 163
Period size: 46 Copynumber: 4.6 Consensus size: 47
79082279 AAGCTGACGC
* * * * *
79082289 CATGTCCTAGATAAGTCTTACACTAGCTTGTATGTCGTGAGGCCGATA
1 CATGTCCCAGACATGTCTTACACTAGCTTATATGTC-TGAGGCCGATG
* * * * *
79082337 CATGTCCCAGACATGTCTTACACTAGC-TCT-CGTCTCAATGTCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATGTCT-GAGGCCGATG
* * * *
79082383 CATGTCCCAGACATGTCTTACACTGGCTTAAATATCTGAAGGCCAATG
1 CATGTCCCAGACATGTCTTACACTAGCTTATATGTCTG-AGGCCGATG
* * *
79082431 CATGTCCCAGAAATGTCTTACAC-AGGCTCT-CATG-CTG-TGCCTGATG
1 CATGTCCCAGACATGTCTTACACTA-GCT-TATATGTCTGAGGCC-GATG
* *
79082477 CATGTCCCAGACAAGTCTCACACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
79082504 ACACATATCA
Statistics
Matches: 132, Mismatches: 27, Indels: 18
0.75 0.15 0.10
Matches are distributed among these distances:
45 4 0.03
46 60 0.45
47 7 0.05
48 60 0.45
49 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.20, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTTATATGTCTGAGGCCGATG
Found at i:79082426 original size:94 final size:94
Alignment explanation
Indices: 79082328--79082500 Score: 226
Period size: 94 Copynumber: 1.8 Consensus size: 94
79082318 GTATGTCGTG
* * * *
79082328 AGGCCGATACATGTCCCAGACATGTCTTACACTA-GCTCTCGT-CTCAATGTC-GATGCATGTCC
1 AGGCCAATACATGTCCCAGAAATGTCTTACAC-AGGCTCTCATGCT--ATGCCTGATGCATGTCC
* *
79082390 CAGACATGTCTTACACTGGCTTAAATATCTGA
63 CAGACAAGTCTCACACTGGCTTAAATATCTGA
* *
79082422 AGGCCAATGCATGTCCCAGAAATGTCTTACACAGGCTCTCATGCTGTGCCTGATGCATGTCCCAG
1 AGGCCAATACATGTCCCAGAAATGTCTTACACAGGCTCTCATGCTATGCCTGATGCATGTCCCAG
79082487 ACAAGTCTCACACT
66 ACAAGTCTCACACT
79082501 AGCACACATA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
93 4 0.06
94 62 0.91
95 2 0.03
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (94 bp):
AGGCCAATACATGTCCCAGAAATGTCTTACACAGGCTCTCATGCTATGCCTGATGCATGTCCCAG
ACAAGTCTCACACTGGCTTAAATATCTGA
Found at i:79091444 original size:35 final size:36
Alignment explanation
Indices: 79091376--79091444 Score: 113
Period size: 35 Copynumber: 1.9 Consensus size: 36
79091366 TCTCTTGCCA
*
79091376 AATTGGTCTGTTTCCCAAAAACTTCCTTCCTTTGCG
1 AATTGGTCTGTTTCACAAAAACTTCCTTCCTTTGCG
*
79091412 AATTGGTCTGTTTCAC-AAAATTTCCTTCCTTTG
1 AATTGGTCTGTTTCACAAAAACTTCCTTCCTTTG
79091445 TTGTCATTTG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
35 16 0.52
36 15 0.48
ACGTcount: A:0.20, C:0.25, G:0.13, T:0.42
Consensus pattern (36 bp):
AATTGGTCTGTTTCACAAAAACTTCCTTCCTTTGCG
Found at i:79092548 original size:56 final size:55
Alignment explanation
Indices: 79092453--79092618 Score: 208
Period size: 56 Copynumber: 3.0 Consensus size: 55
79092443 CCATGGCATC
** * **
79092453 GATATATGTGTGCGAGTAAGACCAAATTTAATAGGTTGGCATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACC-CGTTTAGTACATTGGCATCGATATGTGATTCT
*
79092509 GATATATGTGTGCGAGTAAGACCGCGTTTAGTTCATTGGCATCGATATGTGATTCT
1 GATATATGTGTGCGAGTAAGACC-CGTTTAGTACATTGGCATCGATATGTGATTCT
* * *
79092565 GCTATATGTGTGCGAGTAAGACCCTGTCTTAG-ACAGTGGCATTGATATGTGATT
1 GATATATGTGTGCGAGTAAGACCC-GT-TTAGTACATTGGCATCGATATGTGATT
79092619 ACATGTAAGA
Statistics
Matches: 97, Mismatches: 11, Indels: 4
0.87 0.10 0.04
Matches are distributed among these distances:
55 1 0.01
56 92 0.95
57 4 0.04
ACGTcount: A:0.26, C:0.13, G:0.27, T:0.34
Consensus pattern (55 bp):
GATATATGTGTGCGAGTAAGACCCGTTTAGTACATTGGCATCGATATGTGATTCT
Found at i:79094681 original size:51 final size:51
Alignment explanation
Indices: 79094566--79094686 Score: 138
Period size: 51 Copynumber: 2.4 Consensus size: 51
79094556 ATGCCCGGTG
* ** **
79094566 GCCTGCACATAGTACCACCCTTGTAGTCAAAGCTACCTTCTTCACAAAGTG
1 GCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTTCTTCACAAAGCA
* *
79094617 GCCCT-CACATAGTACCACACTTGTAACCAAAGCTATCTT-TTACACATAGCA
1 G-CCTGCACATAGTACCACACTTGTAACCAAAGCTACCTTCTT-CACAAAGCA
*
79094668 GCCTGCACTTAGTACCACA
1 GCCTGCACATAGTACCACA
79094687 AATGTGATCG
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
50 5 0.08
51 51 0.86
52 3 0.05
ACGTcount: A:0.30, C:0.32, G:0.13, T:0.25
Consensus pattern (51 bp):
GCCTGCACATAGTACCACACTTGTAACCAAAGCTACCTTCTTCACAAAGCA
Found at i:79096345 original size:19 final size:20
Alignment explanation
Indices: 79096321--79096358 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79096311 GGTACCACCA
79096321 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79096340 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79096359 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79097029 original size:37 final size:37
Alignment explanation
Indices: 79096974--79097047 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
79096964 TGCAATTTAG
*
79096974 TCCATAATCTTTTCTTTTCCTCGATCACGACTTGAAT
1 TCCACAATCTTTTCTTTTCCTCGATCACGACTTGAAT
79097011 TCCACAATCTTTTCTTTTCCTCGATCACGACTTGAAT
1 TCCACAATCTTTTCTTTTCCTCGATCACGACTTGAAT
79097048 CTTGTTTTTC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.22, C:0.28, G:0.08, T:0.42
Consensus pattern (37 bp):
TCCACAATCTTTTCTTTTCCTCGATCACGACTTGAAT
Found at i:79097155 original size:30 final size:30
Alignment explanation
Indices: 79097121--79097181 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79097111 CATTTAATAC
79097121 AAACTTTAAAAAAATTACACTTTTGCCCCT
1 AAACTTTAAAAAAATTACACTTTTGCCCCT
*** * *
79097151 AAACTTTTGCATAATTACACTTTTTCCCCT
1 AAACTTTAAAAAAATTACACTTTTGCCCCT
79097181 A
1 A
79097182 GGATCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.34, C:0.25, G:0.03, T:0.38
Consensus pattern (30 bp):
AAACTTTAAAAAAATTACACTTTTGCCCCT
Found at i:79103902 original size:19 final size:20
Alignment explanation
Indices: 79103878--79103915 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
79103868 GGTACCACCA
79103878 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
79103897 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
79103916 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:79110456 original size:40 final size:40
Alignment explanation
Indices: 79110397--79110544 Score: 251
Period size: 40 Copynumber: 3.7 Consensus size: 40
79110387 GAGCATTGGA
*
79110397 ATATATCCGGGCTAAGACCCGAAGGCAATTACGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
79110437 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
79110477 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
79110517 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
79110545 ATGTGTTTGC
Statistics
Matches: 102, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 102 1.00
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:79113642 original size:28 final size:28
Alignment explanation
Indices: 79113604--79113687 Score: 107
Period size: 29 Copynumber: 3.0 Consensus size: 28
79113594 CAAGTCTACA
* * *
79113604 TACATGCATATGGCCCACTATGCCCAAT
1 TACATTCATATGGCCCATTAGGCCCAAT
79113632 CT-CATTCATATGGCCCATTAGGCCCAAAT
1 -TACATTCATATGGCCCATTAGGCCC-AAT
*
79113661 TACATTCGTATGGCCCATTAGGCCCAA
1 TACATTCATATGGCCCATTAGGCCCAA
79113688 CCTTTACTGA
Statistics
Matches: 49, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
28 23 0.47
29 26 0.53
ACGTcount: A:0.27, C:0.31, G:0.15, T:0.26
Consensus pattern (28 bp):
TACATTCATATGGCCCATTAGGCCCAAT
Found at i:79121373 original size:21 final size:21
Alignment explanation
Indices: 79121348--79121390 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
79121338 ATGGAAGTGG
79121348 GAAAGAGGAACAATGGACTTT
1 GAAAGAGGAACAATGGACTTT
*
79121369 GAAAGAGTAACAATGGACTTT
1 GAAAGAGGAACAATGGACTTT
79121390 G
1 G
79121391 TGAGTGGGTT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.42, C:0.09, G:0.28, T:0.21
Consensus pattern (21 bp):
GAAAGAGGAACAATGGACTTT
Found at i:79130478 original size:27 final size:27
Alignment explanation
Indices: 79130423--79130479 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
79130413 TACTATTTTT
* * *
79130423 CCCTTATGTGGTAAGATGATTATTTTG
1 CCCTTATATGGTAAGATAATTATTATG
79130450 CCCTTATATGGTAAGATAACTTA-TATG
1 CCCTTATATGGTAAGATAA-TTATTATG
79130477 CCC
1 CCC
79130480 CTATGTGATG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
27 23 0.88
28 3 0.12
ACGTcount: A:0.26, C:0.18, G:0.18, T:0.39
Consensus pattern (27 bp):
CCCTTATATGGTAAGATAATTATTATG
Found at i:79130847 original size:18 final size:18
Alignment explanation
Indices: 79130824--79130863 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
79130814 TTTAAACTGT
79130824 TACTGCACTGATTACTAC
1 TACTGCACTGATTACTAC
* *
79130842 TACTGCACTGTTTACTGC
1 TACTGCACTGATTACTAC
79130860 TACT
1 TACT
79130864 ATAATGGGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.23, C:0.28, G:0.12, T:0.38
Consensus pattern (18 bp):
TACTGCACTGATTACTAC
Found at i:79135196 original size:56 final size:56
Alignment explanation
Indices: 79135035--79135170 Score: 227
Period size: 56 Copynumber: 2.4 Consensus size: 56
79135025 CCCATGGCAT
*
79135035 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCAATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
79135091 CGATATATGTGTGCGAGTAAGACCACGTTTCATACGTTAGCATCGATATGTGATTC
1 CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
* *
79135147 CGTTATATGTGTGTGAGTAAGACC
1 CGATATATGTGTGCGAGTAAGACC
79135171 CTATTTGGAA
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 75 1.00
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (56 bp):
CGATATATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTC
Found at i:79149424 original size:27 final size:27
Alignment explanation
Indices: 79149394--79149472 Score: 124
Period size: 27 Copynumber: 2.9 Consensus size: 27
79149384 GTCACAAGAT
79149394 ACAGATA-TTGTGGTAGAGCCACCAGAA
1 ACAGATATTTGTGGTAGAGCCACCAG-A
*
79149421 ACAGATATTTGTGGCAGAGCCACCAGA
1 ACAGATATTTGTGGTAGAGCCACCAGA
*
79149448 TCAGATATTTGTGGTAGAGCCACCA
1 ACAGATATTTGTGGTAGAGCCACCA
79149473 AAATGCTTCC
Statistics
Matches: 48, Mismatches: 3, Indels: 2
0.91 0.06 0.04
Matches are distributed among these distances:
27 31 0.65
28 17 0.35
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (27 bp):
ACAGATATTTGTGGTAGAGCCACCAGA
Found at i:79149439 original size:28 final size:27
Alignment explanation
Indices: 79149368--79149472 Score: 113
Period size: 27 Copynumber: 3.9 Consensus size: 27
79149358 GCTGCCAGAG
* * * * *
79149368 CAGATATTGTGACAAAGTCACAAGATA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
79149395 CAGATATTGTGGTAGAGCCACCAGAAA
1 CAGATATTGTGGCAGAGCCACCAGAAA
*
79149422 CAGATATTTGTGGCAGAGCCACCAG-AT
1 CAGATA-TTGTGGCAGAGCCACCAGAAA
*
79149449 CAGATATTTGTGGTAGAGCCACCA
1 CAGATA-TTGTGGCAGAGCCACCA
79149473 AAATGCTTCC
Statistics
Matches: 68, Mismatches: 9, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
27 51 0.75
28 17 0.25
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGAAA
Found at i:79149466 original size:55 final size:54
Alignment explanation
Indices: 79149368--79149472 Score: 149
Period size: 55 Copynumber: 1.9 Consensus size: 54
79149358 GCTGCCAGAG
*
79149368 CAGATATTGTGACAAAGTCACAAGATACAGATATTGTGGTAGAGCCACCAGAAA
1 CAGATATTGTGACAAAGCCACAAGATACAGATATTGTGGTAGAGCCACCAGAAA
* * *
79149422 CAGATATTTGTGGCAGAGCCACCAGAT-CAGATATTTGTGGTAGAGCCACCA
1 CAGATA-TTGTGACAAAGCCACAAGATACAGATA-TTGTGGTAGAGCCACCA
79149473 AAATGCTTCC
Statistics
Matches: 45, Mismatches: 4, Indels: 3
0.87 0.08 0.06
Matches are distributed among these distances:
54 12 0.27
55 33 0.73
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (54 bp):
CAGATATTGTGACAAAGCCACAAGATACAGATATTGTGGTAGAGCCACCAGAAA
Found at i:79149607 original size:26 final size:27
Alignment explanation
Indices: 79149578--79149641 Score: 103
Period size: 26 Copynumber: 2.4 Consensus size: 27
79149568 CAAAATTAAC
79149578 CCTAGGGGTATAATGGTAATTTT-ACA
1 CCTAGGGGTATAATGGTAATTTTCACA
*
79149604 CCTAGGGGTATAATGGTAATTTTCATA
1 CCTAGGGGTATAATGGTAATTTTCACA
*
79149631 CTTAGGGGTAT
1 CCTAGGGGTAT
79149642 TTTAGTAAAT
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 23 0.66
27 12 0.34
ACGTcount: A:0.28, C:0.11, G:0.25, T:0.36
Consensus pattern (27 bp):
CCTAGGGGTATAATGGTAATTTTCACA
Found at i:79151085 original size:47 final size:47
Alignment explanation
Indices: 79151006--79151131 Score: 189
Period size: 47 Copynumber: 2.7 Consensus size: 47
79150996 GGTATAATGC
* * *
79151006 CAATGCCATGTCCCAGACATGGTCATATACTGGCTCATCCATCAAGT
1 CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
*
79151053 CAATATCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
1 CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
* * *
79151100 CGATGCCATGTCCAAGACATGGTCTTACACTG
1 CAATACCATGTCCCAGACATGGTCTTACACTG
79151132 ACTATCGAAA
Statistics
Matches: 71, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 71 1.00
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (47 bp):
CAATACCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGT
Found at i:79151169 original size:49 final size:47
Alignment explanation
Indices: 79151010--79151321 Score: 174
Period size: 47 Copynumber: 6.6 Consensus size: 47
79151000 TAATGCCAAT
* * * * * *
79151010 GCCATGTCCCAGACATGGTCATATACTGGCTCATCCATCAAGTCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
** * * *
79151057 ATCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAAGTCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
* * *
79151104 GCCATGTCCAAGACATGGTCTTACACTGACT-ATCGAAACTGAGGTCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATC--AA-TCAAGTCGAC
* * *
79151153 GCTATGTCCCAGACATGGTCTTACACT-AGCTTTCA-CATATTC--GTGCAAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-C--TCATCA-A-TCAAGT-C-GAC
* * * * * * *
79151203 GCCATGTCCCAGACATGGTCTTACATTGACACCTCTATACATG-CTAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAAT-CAAGTC-GAC
* * * ** * *
79151251 GCCATGTCCCGGACATGGTCTTACACTGACACATC-TTGTAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
79151297 G-CATGTCCCAGACAT-GTCTTACACT
1 GCCATGTCCCAGACATGGTCTTACACT
79151322 AGCTCTCATA
Statistics
Matches: 215, Mismatches: 34, Indels: 35
0.76 0.12 0.12
Matches are distributed among these distances:
44 10 0.05
45 13 0.06
46 7 0.03
47 72 0.33
48 43 0.20
49 36 0.17
50 30 0.14
51 3 0.01
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (47 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTCATCAATCAAGTCGAC
Found at i:79151222 original size:50 final size:47
Alignment explanation
Indices: 79151156--79151375 Score: 175
Period size: 46 Copynumber: 4.7 Consensus size: 47
79151146 GGTCGACGCT
*
79151156 ATGTCCCAGACATGGTCTTACACTAGCTTTCACATATTCGT-GCAAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGC--TCACATATT-GTAGCCAATG-C
* * * * ** *
79151206 ATGTCCCAGACATGGTCTTACA-TTG-ACACCTCTATACATGCTAATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATAT-TGTA-GCCAATG-C
* * * *
79151254 ATGTCCCGGACATGGTCTTACACT-G-ACACATCTTGTAGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
* * * *
79151299 ATGTCCCAGACAT-GTCTTACACTAGCTCTCATAATGTGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
*
79151345 ATGTCCCAGACAT-GTCTTACACTAGCACACA
1 ATGTCCCAGACATGGTCTTACACTAGCTCACA
79151376 AATAACCCGA
Statistics
Matches: 143, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.07
45 14 0.10
46 54 0.38
47 3 0.02
48 37 0.26
49 3 0.02
50 22 0.15
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTAGCTCACATATTGTAGCCAATGC
Found at i:79153479 original size:29 final size:29
Alignment explanation
Indices: 79153447--79153518 Score: 90
Period size: 29 Copynumber: 2.5 Consensus size: 29
79153437 GACATATCTT
* *
79153447 GCCCAGTTCATATTCTTATGGCCCACTAG
1 GCCCAATTCATATTCATATGGCCCACTAG
* * *
79153476 GCCCAATTCACATTCATATGGCCCATTAT
1 GCCCAATTCATATTCATATGGCCCACTAG
*
79153505 GCCCAAATCATATT
1 GCCCAATTCATATT
79153519 ATACTCATGC
Statistics
Matches: 36, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
29 36 1.00
ACGTcount: A:0.26, C:0.31, G:0.12, T:0.31
Consensus pattern (29 bp):
GCCCAATTCATATTCATATGGCCCACTAG
Found at i:79153516 original size:58 final size:57
Alignment explanation
Indices: 79153406--79153518 Score: 129
Period size: 58 Copynumber: 2.0 Consensus size: 57
79153396 CATACATGCA
* * * * **
79153406 TATGGCCCATTGGGCCCAATCGCATTCATATGACATATCTTGCCCAGTTCATATTCT
1 TATGGCCCACTAGGCCCAATCACATTCATATGACACATCTTGCCCAAATCATATTCT
* *
79153463 TATGGCCCACTAGGCCCAATTCACATTCATATGGCCCAT-TATGCCCAAATCATATT
1 TATGGCCCACTAGGCCCAA-TCACATTCATATGACACATCT-TGCCCAAATCATATT
79153519 ATACTCATGC
Statistics
Matches: 46, Mismatches: 8, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
57 18 0.39
58 28 0.61
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (57 bp):
TATGGCCCACTAGGCCCAATCACATTCATATGACACATCTTGCCCAAATCATATTCT
Found at i:79153616 original size:19 final size:19
Alignment explanation
Indices: 79153592--79153629 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
79153582 ACGCCCATCA
*
79153592 GGCCCATTTAGCCCATTCT
1 GGCCCATTTAGCCAATTCT
*
79153611 GGCCCATTTGGCCAATTCT
1 GGCCCATTTAGCCAATTCT
79153630 CAACCCAAGT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.16, C:0.34, G:0.18, T:0.32
Consensus pattern (19 bp):
GGCCCATTTAGCCAATTCT
Found at i:79153752 original size:16 final size:16
Alignment explanation
Indices: 79153739--79153784 Score: 65
Period size: 16 Copynumber: 2.9 Consensus size: 16
79153729 CGGCTTTTTA
79153739 GCATTTTAGCTTTTCG
1 GCATTTTAGCTTTTCG
* **
79153755 GCATTTTGGCAATTCG
1 GCATTTTAGCTTTTCG
79153771 GCATTTTAGCTTTT
1 GCATTTTAGCTTTT
79153785 GCCGATTCAT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.48
Consensus pattern (16 bp):
GCATTTTAGCTTTTCG
Found at i:79156161 original size:56 final size:56
Alignment explanation
Indices: 79156095--79156433 Score: 426
Period size: 56 Copynumber: 6.2 Consensus size: 56
79156085 TCCCAGACAA
* * * * * *
79156095 GGTCTTACTCGTAAACACATATCGGAATCACCTATTGATGCCAACGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
**
79156151 GGTCTTACTCGCACACACATATTGGAATCAC--AT--AT--C--TGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* *
79156199 GGTCTTACTCGCATACACATATCAGAATCACATATCGAGGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* * * *
79156255 GGTCTTACTCGTACACACAAATC-GAAATCACATATCGATGCCAACGTATTAAACAT
1 GGTCTTACTCGCACACACATATCAG-AATCACATATCGATGCCAATGTATTAAACGT
* *
79156311 GGTCTTACTTGCACACACATATCAAAATCACATATCGATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
* * * *
79156367 GGTCTTACTTGCACACACATATTAGAATCATATATCGATGCCAATGTATTAAACAT
1 GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
79156423 GGTCTTACTCG
1 GGTCTTACTCG
79156434 TAATCACATG
Statistics
Matches: 248, Mismatches: 25, Indels: 20
0.85 0.09 0.07
Matches are distributed among these distances:
48 39 0.16
50 3 0.01
52 3 0.01
54 3 0.01
55 1 0.00
56 199 0.80
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
GGTCTTACTCGCACACACATATCAGAATCACATATCGATGCCAATGTATTAAACGT
Found at i:79156332 original size:160 final size:164
Alignment explanation
Indices: 79156095--79156441 Score: 477
Period size: 168 Copynumber: 2.1 Consensus size: 164
79156085 TCCCAGACAA
* * * * *
79156095 GGTCTTACTCGTAAACACATATCGGAATCACCTATTGATGCCAACGTATTAAACGTGGTCTTACT
1 GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
*** *
79156160 CGCACACACATATTGGAATCAC-AT-AT-C-TGTATTAAACGTGGTCTTACTCGCATACACATAT
66 CGCACACACATATCAAAATCACAATCATCCATGTATTAAACGTGGTCTTACTCGCACACACATAT
*
79156221 CAGAATCACATATCGAGGCCAATGTATTAAACGT
131 CAGAATCACATATCGAGGCCAATGTATTAAACAT
*
79156255 GGTCTTACTCGTACACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
1 GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
* *
79156320 TGCACACACATATCAAAATCACATATCGATGCCAATGTATTAAACGTGGTCTTACTTGCACACAC
66 CGCACACACATATCAAAATCACA-ATC-AT-CC-ATGTATTAAACGTGGTCTTACTCGCACACAC
* * *
79156385 ATATTAGAATCATATATCGATGCCAATGTATTAAACAT
127 ATATCAGAATCACATATCGAGGCCAATGTATTAAACAT
*
79156423 GGTCTTACTCGTAATCACA
1 GGTCTTACTCGTAAACACA
79156442 TGTCGATGCC
Statistics
Matches: 161, Mismatches: 18, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
160 77 0.48
162 2 0.01
164 2 0.01
166 1 0.01
168 79 0.49
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (164 bp):
GGTCTTACTCGTAAACACAAATCGAAATCACATATCGATGCCAACGTATTAAACATGGTCTTACT
CGCACACACATATCAAAATCACAATCATCCATGTATTAAACGTGGTCTTACTCGCACACACATAT
CAGAATCACATATCGAGGCCAATGTATTAAACAT
Found at i:79156453 original size:43 final size:43
Alignment explanation
Indices: 79156392--79156617 Score: 274
Period size: 43 Copynumber: 5.3 Consensus size: 43
79156382 CACATATTAG
* *** *
79156392 AATCATATATCGATGCCAATGTATTAAACATGGTCTTACTCGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* * *
79156435 AATCACATGTCGATGCCAACGTCCCAAACATGGTCTTACATGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* * * *
79156478 AATCACATATCAATGCCAATATCCCAGACGTGGTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* * **
79156521 AATCACATATCGATGCCAACGTCCCAGACATACTCTTACACGT
1 AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
* *
79156564 AATCACATATCGATGCCAATGTCCCAGAA-GTGGTGTTACACGT
1 AATCACATATCGATGCCAATGTCCCA-AACATGGTCTTACACGT
79156607 AATCACATATC
1 AATCACATATC
79156618 AAAAATCCTA
Statistics
Matches: 155, Mismatches: 27, Indels: 2
0.84 0.15 0.01
Matches are distributed among these distances:
43 154 0.99
44 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.15, T:0.27
Consensus pattern (43 bp):
AATCACATATCGATGCCAATGTCCCAAACATGGTCTTACACGT
Found at i:79156537 original size:86 final size:86
Alignment explanation
Indices: 79156422--79156617 Score: 302
Period size: 86 Copynumber: 2.3 Consensus size: 86
79156412 GTATTAAACA
* * ** *
79156422 TGGTCTTACTCGTAATCACATGTCGATGCCAACGTCCCAAACATGGTCTTACATGTAATCACATA
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATA
*
79156487 TCAATGCCAATATCCCAGACG
66 TCAATGCCAATATCCCAGAAG
*
79156508 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGACATACTCTTACACGTAATCACATA
1 TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATA
* *
79156573 TCGATGCCAATGTCCCAGAAG
66 TCAATGCCAATATCCCAGAAG
*
79156594 TGGTGTTACACGTAATCACATATC
1 TGGTCTTACACGTAATCACATATC
79156618 AAAAATCCTA
Statistics
Matches: 100, Mismatches: 10, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
86 100 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.27
Consensus pattern (86 bp):
TGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAAACATACTCTTACACGTAATCACATA
TCAATGCCAATATCCCAGAAG
Found at i:79169151 original size:15 final size:15
Alignment explanation
Indices: 79169127--79169171 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
79169117 AATGATATCA
79169127 TATCTTGGATTTCTT
1 TATCTTGGATTTCTT
* * *
79169142 TATTTTGGATTCCTC
1 TATCTTGGATTTCTT
*
79169157 TATCTTGGTTTTCTT
1 TATCTTGGATTTCTT
79169172 ATCATCTTTA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.11, C:0.16, G:0.13, T:0.60
Consensus pattern (15 bp):
TATCTTGGATTTCTT
Found at i:79171576 original size:42 final size:42
Alignment explanation
Indices: 79171496--79171646 Score: 131
Period size: 42 Copynumber: 3.6 Consensus size: 42
79171486 TGTGTTATCA
* * * * * * *
79171496 TGTAAGACCATATCTGGGATACGGCTTTGATATGAGATTTCG
1 TGTAAGACCATATCTAGGACATGGCATCGAAATAAGATTTCG
*
79171538 TGTAAGACCATGTCTAGGACATGGCATCGAAATAAGATTTTCG
1 TGTAAGACCATATCTAGGACATGGCATCGAAATAAGA-TTTCG
* * * ** ** *
79171581 TATAAGACCATATCTGGGATATGGCATCGATGTAAGATCCCA
1 TGTAAGACCATATCTAGGACATGGCATCGAAATAAGATTTCG
* *
79171623 TGTAAGACCACATTTAGGACATGG
1 TGTAAGACCATATCTAGGACATGG
79171647 TATTGGCATC
Statistics
Matches: 86, Mismatches: 22, Indels: 2
0.78 0.20 0.02
Matches are distributed among these distances:
42 50 0.58
43 36 0.42
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (42 bp):
TGTAAGACCATATCTAGGACATGGCATCGAAATAAGATTTCG
Found at i:79171617 original size:43 final size:43
Alignment explanation
Indices: 79171445--79171618 Score: 154
Period size: 43 Copynumber: 4.0 Consensus size: 43
79171435 TGATGAGATC
* *
79171445 TCGTATAAGACCATATCTGGGATATGGCATCGGCATCGTTATG-TGTT
1 TCGTATAAGACCATATCTGGGATATGGCATC-G-AT--ATAAGAT-TT
* * * * * *
79171492 ATCATGTAAGACCATATCTGGGATACGGCTTTGATATGAGA-TT
1 -TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
* * * * *
79171535 TCGTGTAAGACCATGTCTAGGACATGGCATCGAAATAAGATTT
1 TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
*
79171578 TCGTATAAGACCATATCTGGGATATGGCATCGATGTAAGAT
1 TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGAT
79171619 CCCATGTAAG
Statistics
Matches: 101, Mismatches: 23, Indels: 9
0.76 0.17 0.07
Matches are distributed among these distances:
42 31 0.31
43 39 0.39
44 2 0.02
46 2 0.02
47 1 0.01
48 26 0.26
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
TCGTATAAGACCATATCTGGGATATGGCATCGATATAAGATTT
Found at i:79173423 original size:18 final size:18
Alignment explanation
Indices: 79173400--79173438 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
79173390 GTCGCAAGAG
79173400 AGTAAACCT-CCCACAATT
1 AGTAAA-CTGCCCACAATT
79173418 AGTAAACTGCCCACAATT
1 AGTAAACTGCCCACAATT
79173436 AGT
1 AGT
79173439 CAAAAAGGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
17 2 0.10
18 18 0.90
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.23
Consensus pattern (18 bp):
AGTAAACTGCCCACAATT
Found at i:79177295 original size:72 final size:72
Alignment explanation
Indices: 79177178--79177320 Score: 241
Period size: 72 Copynumber: 2.0 Consensus size: 72
79177168 CAGGGCACAC
** * *
79177178 ACCCGTGTCCCCCAATTTCAGCCTGTGTGATTTGCGAATTTCAAATTTAGGCGCATCTGACATTT
1 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTAGGCACATCTGACATTT
79177243 AGTACAT
66 AGTACAT
*
79177250 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTGGGCACATCTGACATTT
1 ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTAGGCACATCTGACATTT
79177315 AGTACA
66 AGTACA
79177321 CGCCTGTGTT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
72 66 1.00
ACGTcount: A:0.24, C:0.27, G:0.17, T:0.31
Consensus pattern (72 bp):
ACCCGTGTCCCCCAATTTCAGCCCATGTGATTCGCGAATTTCAAATTTAGGCACATCTGACATTT
AGTACAT
Found at i:79192332 original size:39 final size:41
Alignment explanation
Indices: 79192237--79192420 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 41
79192227 TTGAATGATG
*
79192237 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATA
*
79192276 TCCGGACTAAGAT-CCGAAGGCATTTGTGCG-AGATACTAAT-
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAAG-TACTAATA
79192316 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGTTACTAA-A
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATA
* *
79192355 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
* *
79192395 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79192421 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 9, Indels: 19
0.82 0.06 0.12
Matches are distributed among these distances:
39 54 0.43
40 61 0.48
41 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (41 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATA
Found at i:79192372 original size:79 final size:81
Alignment explanation
Indices: 79192237--79192420 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
79192227 TTGAATGATG
79192237 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
79192300 TGTGCGAGA-TACTA-A
66 TGTGCGA-ATTACTATA
* * **
79192315 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAA-ATCCGGGTTAAG-TCCCGAAGGC
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGAC-AATATCCGGACTAAGAT-CCGAAGGC
79192376 ATTTGTGCGAATTACTATA
63 ATTTGTGCGAATTACTATA
* *
79192395 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
79192421 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 11 0.12
79 58 0.63
80 23 0.25
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACAATATCCGGACTAAGATCCGAAGGCATT
TGTGCGAATTACTATA
Found at i:79192442 original size:79 final size:79
Alignment explanation
Indices: 79192289--79192453 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
79192279 GGACTAAGAT
* ** *
79192289 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
79192354 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
79192368 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
79192430 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
79192447 CCGAAGG
1 CCGAAGG
79192454 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:79199436 original size:43 final size:42
Alignment explanation
Indices: 79199365--79199474 Score: 150
Period size: 43 Copynumber: 2.6 Consensus size: 42
79199355 GAGATTAGTA
* * *
79199365 TAAGACCATATCTGGGATATGGCATCGATATGAGA-CTTCGTG
1 TAAGACCATATCTAGGATATGGCATCGATATGAGATC-CCATG
* *
79199407 TAAGACCATAGCTAGGCTATTGGCATCGATATGAGATCCCATG
1 TAAGACCATATCTAGGATA-TGGCATCGATATGAGATCCCATG
79199450 TAAGACCATATCTAGGATATGGCAT
1 TAAGACCATATCTAGGATATGGCAT
79199475 TGGTATGGTG
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 22 0.37
43 36 0.61
44 1 0.02
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (42 bp):
TAAGACCATATCTAGGATATGGCATCGATATGAGATCCCATG
Found at i:79202174 original size:46 final size:47
Alignment explanation
Indices: 79202066--79202192 Score: 150
Period size: 46 Copynumber: 2.7 Consensus size: 47
79202056 AAGCTGACGC
* * * * *
79202066 CATGTCCTAGACAGGTCTTACACTAGCTTGTATATCCCAAGGCTAATG
1 CATGTCCCAGACATGTCTTACACTAGC-TCTACATCCCAAGGCCAATG
* * *
79202114 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCAATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTACATCCCAAGGCCAATG
*
79202160 CATGTCCCAGACATGTCTTACACTGGCTC-ACAT
1 CATGTCCCAGACATGTCTTACACTAGCTCTACAT
79202193 ACCACCCAAT
Statistics
Matches: 69, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
46 42 0.61
47 2 0.03
48 25 0.36
ACGTcount: A:0.25, C:0.30, G:0.17, T:0.28
Consensus pattern (47 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTACATCCCAAGGCCAATG
Found at i:79206036 original size:48 final size:48
Alignment explanation
Indices: 79205965--79206296 Score: 339
Period size: 48 Copynumber: 6.9 Consensus size: 48
79205955 AGGGTAAATT
** * *
79205965 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCT-TACATGTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT-CATATCGAG
* * *
79206013 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
79206061 GTCGATGCCATGTCCTAGACATGGTCTTAC-CTGGCTCTCATAAT-GTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-ATCGAG
* * * * *
79206108 GCCGACGCCATGTCCCAAACATGGTCTTACACTAGCACACATATCGAC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * * * *
79206156 ACCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAAC-ATT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGA-G
* * * *
79206204 GCCGATGCCATGTTCCAAACATGGTCTTACATTAGCTCTCATATCGTG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
* * * *
79206252 GCCGACGCCATGTCTCAGACATGGTCTTACACTAGCACACATATC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATC
79206297 ACCCAATGTC
Statistics
Matches: 235, Mismatches: 43, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
47 39 0.17
48 195 0.83
49 1 0.00
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (48 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATATCGAG
Found at i:79206247 original size:96 final size:96
Alignment explanation
Indices: 79205965--79206284 Score: 376
Period size: 96 Copynumber: 3.3 Consensus size: 96
79205955 AGGGTAAATT
** **
79205965 GCCGATGCCATGTCTTAGACATGGTCTTACACTGGCT-TACATGTCGA-GGCCGATGCCATGTCC
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAC-ATGGCCGATGCCATGTCC
* * * *
79206028 CAGACATGGTCTTACACTAGCTCTCATCTCAAT
64 CAAACATGGTCTTACACTAGCTCTCATATCGAC
* * ** *
79206061 GTCGATGCCATGTCCTAGACATGGTCTTAC-CTGGCTCTCATAATGTGGCCGACGCCATGTCCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCA
* *
79206125 AACATGGTCTTACACTAGCACACATATCGAC
66 AACATGGTCTTACACTAGCTCTCATATCGAC
* * * * *
79206156 ACCGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCATAACATTGCCGATGCCATGTTCCA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCA
* **
79206221 AACATGGTCTTACATTAGCTCTCATATCGTG
66 AACATGGTCTTACACTAGCTCTCATATCGAC
* *
79206252 GCCGACGCCATGTCTCAGACATGGTCTTACACT
1 GCCGATGCCATGTCCCAGACATGGTCTTACACT
79206285 AGCACACATA
Statistics
Matches: 188, Mismatches: 33, Indels: 6
0.83 0.15 0.03
Matches are distributed among these distances:
95 77 0.41
96 111 0.59
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (96 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAACATGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCTCTCATATCGAC
Found at i:79207627 original size:56 final size:58
Alignment explanation
Indices: 79207492--79207640 Score: 164
Period size: 56 Copynumber: 2.6 Consensus size: 58
79207482 TATTGACCTT
* * * * * *
79207492 GTTATAGAAAAGATTTAGCCCGAACGGGTAATCCTAATATAATACCTCTCGAGTATAC
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATAC
* *
79207550 GTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGAACT-CCT-T-GAGCATAC
1 GTTAT-ATAAAGGATTTAGCCTGGACTGGTAATCCTAATAT-AA-TACCTCTCGAGCATAC
79207606 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
1 GTTATATAAAGGATTTAGCCTGGACTGGTAATCCT
79207641 GTTATACAAT
Statistics
Matches: 77, Mismatches: 10, Indels: 10
0.79 0.10 0.10
Matches are distributed among these distances:
55 2 0.03
56 37 0.48
57 2 0.03
58 34 0.44
59 2 0.03
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCCTGGACTGGTAATCCTAATATAATACCTCTCGAGCATAC
Found at i:79210087 original size:37 final size:37
Alignment explanation
Indices: 79210046--79210118 Score: 110
Period size: 37 Copynumber: 2.0 Consensus size: 37
79210036 GGCACTTTGG
*
79210046 TGCATTTCATTTCAGAGCATAGGTTGGAGCACTTCAA
1 TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCAA
** *
79210083 TGCATTGCATTTTGGAGCTTAGGTTGGAGCACTTCA
1 TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCA
79210119 GTGTGTATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 32 1.00
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (37 bp):
TGCATTGCATTTCAGAGCATAGGTTGGAGCACTTCAA
Found at i:79211560 original size:39 final size:39
Alignment explanation
Indices: 79211515--79211596 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
79211505 ATCATAAGCT
*
79211515 TTATGTACATACATGTACCATCTTGTAATAATTTCATAC
1 TTATGTACATACATATACCATCTTGTAATAATTTCATAC
*
79211554 TTATGTACATACCTATACCATCTTGTAATAATTTCATAC
1 TTATGTACATACATATACCATCTTGTAATAATTTCATAC
79211593 TTAT
1 TTAT
79211597 TCTCATAGTT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.33, C:0.18, G:0.06, T:0.43
Consensus pattern (39 bp):
TTATGTACATACATATACCATCTTGTAATAATTTCATAC
Found at i:79215006 original size:72 final size:72
Alignment explanation
Indices: 79214889--79215107 Score: 411
Period size: 72 Copynumber: 3.0 Consensus size: 72
79214879 TTACACACAC
*
79214889 ATACCTGCACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCTCGTTAAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCTCGTTAAACACAT
79214954 CGGAATA
66 CGGAATA
79214961 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCTCGTTAAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCTCGTTAAACACAT
79215026 CGGAATA
66 CGGAATA
* *
79215033 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCCCGTTGAACACAT
1 ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCTCGTTAAACACAT
79215098 CGGAATA
66 CGGAATA
79215105 ATA
1 ATA
79215108 ACGGATATCG
Statistics
Matches: 144, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
72 144 1.00
ACGTcount: A:0.37, C:0.21, G:0.09, T:0.33
Consensus pattern (72 bp):
ATACCTGAACTTATTCATTACATAGTCAAATTCAATTACACCTAGTAATTTCTCGTTAAACACAT
CGGAATA
Found at i:79215251 original size:51 final size:51
Alignment explanation
Indices: 79215119--79215398 Score: 183
Period size: 51 Copynumber: 5.5 Consensus size: 51
79215109 CGGATATCGG
* * * * * *
79215119 GTGGCCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCT-TCTTCACAAA
1 GTGGCCTGCACATAGTACCACACATGTGA-TCAAAGCCATCTAT-TACACATA
* * * *
79215170 GTGGCCTTCACATAGTACCACACTTTTGATCAAAGCCATCTCTTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * *
79215221 GTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAGTACGCATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * * * *
79215272 GTAGCCTGCACTTAGTACTATACATGCGACCTAA-CCACCTAGTACACATA
1 GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
* * * * * * *
79215322 GTAGCCTGCACTTCGTACTACACACGTGACCTAAAACCAT-T-TTAAGCACATA
1 GTGGCCTGCACATAGTACCACACATGTGATC-AAAGCCATCTATT-A-CACATA
*
79215374 GTGGCCTGCACATAGTACTACACAT
1 GTGGCCTGCACATAGTACCACACAT
79215399 TTTTTCTCAT
Statistics
Matches: 185, Mismatches: 38, Indels: 11
0.79 0.16 0.05
Matches are distributed among these distances:
50 40 0.22
51 113 0.61
52 32 0.17
ACGTcount: A:0.30, C:0.29, G:0.16, T:0.25
Consensus pattern (51 bp):
GTGGCCTGCACATAGTACCACACATGTGATCAAAGCCATCTATTACACATA
Found at i:79215332 original size:50 final size:51
Alignment explanation
Indices: 79215213--79215355 Score: 171
Period size: 50 Copynumber: 2.8 Consensus size: 51
79215203 AGCCATCTCT
* * * * * *
79215213 TACACATAGTGGCCTGCACTTAGTACCACACATGTGATCGAAGCTATCGAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
* * * *
79215264 TACGCATAGTAGCCTGCACTTAGTACTATACATGCGACCTAA-CCACCTAG
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
* *
79215314 TACACATAGTAGCCTGCACTTCGTACTACACACGTGACCTAA
1 TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAA
79215356 AACCATTTTA
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
50 42 0.55
51 35 0.45
ACGTcount: A:0.30, C:0.29, G:0.17, T:0.24
Consensus pattern (51 bp):
TACACATAGTAGCCTGCACTTAGTACTACACATGTGACCTAAGCCACCGAG
Found at i:79222734 original size:47 final size:47
Alignment explanation
Indices: 79222680--79222800 Score: 197
Period size: 47 Copynumber: 2.6 Consensus size: 47
79222670 TATTTGAATA
*
79222680 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* *
79222727 AATGTGAAAGTGTATATATGTGATAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
* *
79222774 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
79222801 TCCCGAAGGG
Statistics
Matches: 68, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 68 1.00
ACGTcount: A:0.34, C:0.07, G:0.31, T:0.27
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAACGTGATG
Found at i:79224373 original size:40 final size:39
Alignment explanation
Indices: 79224264--79224398 Score: 171
Period size: 40 Copynumber: 3.4 Consensus size: 39
79224254 ATTGATTATT
**
79224264 TATGGCACTTAGTGTGCGATACAACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGAT-TGACATAGCTTCGGCTATA
*
79224304 TATGGCACTTAGTGTGCTATTCGACATAGCTTCGGCTATA
1 TATGGCACTTAGTGTGCGATT-GACATAGCTTCGGCTATA
* * *
79224344 TATGGCACTTAGTGTGCGACTTGAGATAGCTTCAGCTATG
1 TATGGCACTTAGTGTGCGA-TTGACATAGCTTCGGCTATA
* *
79224384 CATAGCACTTAGTGT
1 TATGGCACTTAGTGT
79224399 AGAAGATATC
Statistics
Matches: 84, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
40 82 0.98
41 2 0.02
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.33
Consensus pattern (39 bp):
TATGGCACTTAGTGTGCGATTGACATAGCTTCGGCTATA
Done.