Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 233 of 297
Found at i:79508572 original size:32 final size:32
Alignment explanation
Indices: 79508490--79508562 Score: 110
Period size: 32 Copynumber: 2.3 Consensus size: 32
79508480 AAATTGAAAA
* * *
79508490 GGGCTAGGCCCAACTGATATTGGTTCTGATAT
1 GGGCTAGGCCCAACTGATATTGATTCTAAGAT
79508522 GGGCTAGGCCCAACTGATATTGATTCTAAGAT
1 GGGCTAGGCCCAACTGATATTGATTCTAAGAT
*
79508554 GGGTTAGGC
1 GGGCTAGGC
79508563 TTAATTGATA
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 37 1.00
ACGTcount: A:0.23, C:0.18, G:0.30, T:0.29
Consensus pattern (32 bp):
GGGCTAGGCCCAACTGATATTGATTCTAAGAT
Found at i:79516905 original size:41 final size:40
Alignment explanation
Indices: 79516853--79517052 Score: 204
Period size: 41 Copynumber: 4.9 Consensus size: 40
79516843 GTACATTTAG
* *
79516853 GGGTACCGAAGTACAAACTA-GGGCACGTTTGTGCAATTTA
1 GGGTACCGAAGTACAAA-TAGGGGCACGTATGTGCAATTAA
* * ** *
79516893 GTGGTACTGAAGTAAAAATAGGGGCACAAATGTGCAATTCAG
1 G-GGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT-AA
* * * *
79516935 GGGTACCGAAGTACAAACACGGGCATGTCTGTGCAATTCAA
1 GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT-AA
* * * *
79516976 GGGTACCGAAATACAAATAGAGGCACATATGTACAATTCAA
1 GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATT-AA
*
79517017 GGGTACCGAAGTACAAATAGGGGCACGTATCTGCAA
1 GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAA
79517053 CTTATCATTT
Statistics
Matches: 128, Mismatches: 29, Indels: 5
0.79 0.18 0.03
Matches are distributed among these distances:
40 3 0.02
41 124 0.97
42 1 0.01
ACGTcount: A:0.35, C:0.17, G:0.27, T:0.20
Consensus pattern (40 bp):
GGGTACCGAAGTACAAATAGGGGCACGTATGTGCAATTAA
Found at i:79516949 original size:82 final size:83
Alignment explanation
Indices: 79516838--79517044 Score: 255
Period size: 82 Copynumber: 2.6 Consensus size: 83
79516828 TAGACAGAGT
* * *
79516838 ACAAA-GTAC-ATTTAGGGGTACCGAAGTACAAACTA-GGGCACGTTTGTGCAATT-TAGTGGTA
1 ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGTCTGTGCAATTCAAG-GGTA
* * *
79516899 CTGAAGTAAAAATAGGGGC
65 CCGAAATAAAAATAGAGGC
* *
79516918 ACAAATGTGCAATTCAGGGGTACCGAAGTACAAAC-ACGGGCATGTCTGTGCAATTCAAGGGTAC
1 ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGTCTGTGCAATTCAAGGGTAC
*
79516982 CGAAATACAAATAGAGGC
66 CGAAATAAAAATAGAGGC
* * *
79517000 ACATATGTACAATTCAAGGGTACCGAAGTACAAA-TAGGGGCACGT
1 ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGT
79517045 ATCTGCAACT
Statistics
Matches: 108, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
80 5 0.05
81 4 0.04
82 97 0.90
83 2 0.02
ACGTcount: A:0.36, C:0.17, G:0.26, T:0.21
Consensus pattern (83 bp):
ACAAATGTACAATTCAGGGGTACCGAAGTACAAACTACGGGCACGTCTGTGCAATTCAAGGGTAC
CGAAATAAAAATAGAGGC
Found at i:79518952 original size:68 final size:67
Alignment explanation
Indices: 79518880--79519029 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
79518870 CATCATGTGT
* * * *
79518880 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
79518942 ATGTAG
62 ATGTAG
** * *
79518948 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
79519013 AG
66 AG
79519015 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
79519030 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:79518985 original size:64 final size:64
Alignment explanation
Indices: 79518904--79519087 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
79518894 AGACATTATG
* *
79518904 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
79518968 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
79519033 AA
63 AA
* * * *
79519035 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
79519088 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:79519434 original size:29 final size:29
Alignment explanation
Indices: 79519393--79519452 Score: 102
Period size: 29 Copynumber: 2.1 Consensus size: 29
79519383 TACAAAGAAA
*
79519393 GTGTGACAGAGTGAATTACCAATAAAACT
1 GTGTGAAAGAGTGAATTACCAATAAAACT
*
79519422 GTGTGAAAGAGTGAATTAGCAATAAAACT
1 GTGTGAAAGAGTGAATTACCAATAAAACT
79519451 GT
1 GT
79519453 TTTGGATAGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (29 bp):
GTGTGAAAGAGTGAATTACCAATAAAACT
Found at i:79527602 original size:27 final size:27
Alignment explanation
Indices: 79527552--79527915 Score: 253
Period size: 27 Copynumber: 13.6 Consensus size: 27
79527542 TTAATTTACC
* *
79527552 AAATTACCAAAATAACC-CCGATTTATA
1 AAATTACCAAAAT-ACCATCGATTTGTA
* *
79527579 AAATTACCCAAATATCC-TCAATTTGTA
1 AAATTACCAAAATA-CCATCGATTTGTA
** *
79527606 AAATTACTGACATACCATCGA-TTGTA
1 AAATTACCAAAATACCATCGATTTGTA
** *
79527632 AAATTACTGAAATACCCTCGATTTGTA
1 AAATTACCAAAATACCATCGATTTGTA
*
79527659 AAATTACCGAAATACCATCGA-TTGTA
1 AAATTACCAAAATACCATCGATTTGTA
* *
79527685 AAATTACTAAAATACCTTCGATTTGTA
1 AAATTACCAAAATACCATCGATTTGTA
* * * *
79527712 AAATTACCAAAATACCTTTGGTTTATA
1 AAATTACCAAAATACCATCGATTTGTA
* * *
79527739 AAGTTACCAAAATACC-CCTGGTTTGTA
1 AAATTACCAAAATACCATC-GATTTGTA
* * * **
79527766 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCATCGATTTGTA
* * *
79527793 AAATTACCAAAATGCC-CCTGGTTTGTA
1 AAATTACCAAAATACCATC-GATTTGTA
* * *
79527820 AAATTACCAAAATACCCT-TAGTT-TA
1 AAATTACCAAAATACCATCGATTTGTA
* * *
79527845 CAAAGTTACCAAAATACC-CCTAGTTTGTT
1 -AAA-TTACCAAAATACCATCGA-TTTGTA
* *
79527874 AAATTACCAAAATACCATTGCTTTG-A
1 AAATTACCAAAATACCATCGATTTGTA
* *
79527900 AAAATACTAAAATACC
1 AAATTACCAAAATACC
79527916 CCTGTGGGGT
Statistics
Matches: 275, Mismatches: 48, Indels: 29
0.78 0.14 0.08
Matches are distributed among these distances:
25 2 0.01
26 69 0.25
27 198 0.72
28 5 0.02
29 1 0.00
ACGTcount: A:0.41, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCATCGATTTGTA
Found at i:79527772 original size:54 final size:52
Alignment explanation
Indices: 79527600--79527919 Score: 311
Period size: 54 Copynumber: 6.0 Consensus size: 52
79527590 ATATCCTCAA
** * * * ** *
79527600 TTTGTAAAATTACTGACATACCATCGATTGTAAAATTACTGAAATA-CCCTCGA
1 TTTGTAAAATTACCAAAATACCATTGGTT-TAAAATTACCAAAATACCCCT-GG
* * * * * *
79527653 TTTGTAAAATTACCGAAATACCATCGATTGTAAAATTACTAAAATA-CCTTCGA
1 TTTGTAAAATTACCAAAATACCATTGGTT-TAAAATTACCAAAATACCCCT-GG
*
79527706 TTTGTAAAATTACCAAAATACCTTTGGTTTATAAAGTTACCAAAATACCCCTGG
1 TTTGTAAAATTACCAAAATACCATTGGTTTA-AAA-TTACCAAAATACCCCTGG
* *
79527760 TTTGTAAAATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATGCCCCTGG
1 TTTGTAAAATTACCAAAATACCATTGGTTT--AAAATTACCAAAATACCCCTGG
* * *
79527814 TTTGTAAAATTACCAAAATACCCTTAGTTTACAAAGTTACCAAAATACCCCTAG
1 TTTGTAAAATTACCAAAATACCATTGGTTTA-AAA-TTACCAAAATACCCCTGG
* * * *
79527868 TTTGTTAAATTACCAAAATACCATTGCTTTGAAAAATACTAAAATACCCCTG
1 TTTGTAAAATTACCAAAATACCATTGGTTT-AAAATTACCAAAATACCCCTG
79527920 TGGGGTAGAA
Statistics
Matches: 236, Mismatches: 23, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
52 3 0.01
53 94 0.40
54 131 0.56
55 7 0.03
56 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.10, T:0.32
Consensus pattern (52 bp):
TTTGTAAAATTACCAAAATACCATTGGTTTAAAATTACCAAAATACCCCTGG
Found at i:79527947 original size:27 final size:27
Alignment explanation
Indices: 79527909--79528042 Score: 178
Period size: 27 Copynumber: 5.0 Consensus size: 27
79527899 AAAAATACTA
*
79527909 AAATACCCCTGTGGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
79527936 AAATACCCCTGTAGGGTAGAATCACCA
1 AAATACCCCTGTAGGGTAGAATTACCG
* *
79527963 AAATACCCTTGTAGGGTAGAAATACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
79527990 AAATACCCCTGTAGGGTAGAATTACCG
1 AAATACCCCTGTAGGGTAGAATTACCG
* * * * *
79528017 AGATAACCTTGTGGGGTAAAATTACC
1 AAATACCCCTGTAGGGTAGAATTACC
79528043 ATTTTGCCCC
Statistics
Matches: 93, Mismatches: 14, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 93 1.00
ACGTcount: A:0.34, C:0.21, G:0.22, T:0.22
Consensus pattern (27 bp):
AAATACCCCTGTAGGGTAGAATTACCG
Found at i:79527980 original size:54 final size:54
Alignment explanation
Indices: 79527908--79528042 Score: 198
Period size: 54 Copynumber: 2.5 Consensus size: 54
79527898 GAAAAATACT
*
79527908 AAAATACCCCTGTGGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATCACC
1 AAAATACCCTTGTGGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATCACC
* * *
79527962 AAAATACCCTTGTAGGGTAGAAATACCGAAATACCCCTGTAGGGTAGAATTACC
1 AAAATACCCTTGTGGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATCACC
* * * *
79528016 GAGATAACCTTGTGGGGTAAAATTACC
1 AAAATACCCTTGTGGGGTAGAATTACC
79528043 ATTTTGCCCC
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 71 1.00
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (54 bp):
AAAATACCCTTGTGGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATCACC
Found at i:79528265 original size:24 final size:25
Alignment explanation
Indices: 79528205--79528258 Score: 72
Period size: 25 Copynumber: 2.2 Consensus size: 25
79528195 GCTATGCTCT
* *
79528205 AGTTTACCGAAAAGGGCTTTGCCCC
1 AGTTTATCAAAAAGGGCTTTGCCCC
* *
79528230 AGTTTATCAAAAAGGGTTTTGCCCT
1 AGTTTATCAAAAAGGGCTTTGCCCC
79528255 AGTT
1 AGTT
79528259 ATTAAAAGAG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (25 bp):
AGTTTATCAAAAAGGGCTTTGCCCC
Found at i:79541661 original size:28 final size:28
Alignment explanation
Indices: 79541621--79541699 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
79541611 GAAATCAAAT
* * *
79541621 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
79541649 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
79541677 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
79541700 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:79550733 original size:49 final size:49
Alignment explanation
Indices: 79550660--79550765 Score: 128
Period size: 49 Copynumber: 2.2 Consensus size: 49
79550650 AAAGGAAGAG
*
79550660 AGGAAAG-GGTAGCAGCTTACAGAGCAGAAGAAAT-AC-AGCTGCAAGGAA
1 AGGAAAGAGGTAGCAGCTTACAGAGCAGAA-AAATCACAAAC-GCAAGGAA
* ** *
79550708 GGGAAAGAGGTAGCATTTTATAGAGCAGAAAAATCACAAACGCAAGGAA
1 AGGAAAGAGGTAGCAGCTTACAGAGCAGAAAAATCACAAACGCAAGGAA
79550757 AGGAAAGAG
1 AGGAAAGAG
79550766 AAATTTGCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
48 10 0.20
49 37 0.76
50 2 0.04
ACGTcount: A:0.46, C:0.12, G:0.30, T:0.11
Consensus pattern (49 bp):
AGGAAAGAGGTAGCAGCTTACAGAGCAGAAAAATCACAAACGCAAGGAA
Found at i:79556545 original size:50 final size:49
Alignment explanation
Indices: 79556427--79556548 Score: 140
Period size: 49 Copynumber: 2.5 Consensus size: 49
79556417 GGTATAATTC
* * *
79556427 CGATGCCATGTTCCAAACATGGTCTTACACTAACTATCGAAATCAAGGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCAACGT
* * * *
79556476 CGACGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-ACAT-ATACGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCA-ACGT
79556524 GCTGATGCCATGTCCCAGACATGGT
1 -C-GATGCCATGTCCCAGACATGGT
79556549 TTTATACTGA
Statistics
Matches: 62, Mismatches: 8, Indels: 5
0.83 0.11 0.07
Matches are distributed among these distances:
47 1 0.02
48 6 0.10
49 34 0.55
50 21 0.34
ACGTcount: A:0.27, C:0.29, G:0.19, T:0.25
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAACTATCGAAATCAACGT
Found at i:79556642 original size:46 final size:46
Alignment explanation
Indices: 79556592--79556740 Score: 122
Period size: 46 Copynumber: 3.2 Consensus size: 46
79556582 CCCAGAGACA
79556592 TCTTACACTGGCT-TACATCTTGAGGCCGATGCACATTCCAGACATG
1 TCTTACACTGGCTCT-CATCTTGAGGCCGATGCACATTCCAGACATG
* * ** * *
79556638 TCTTACGCTAGCTCTCATCTCAATGTCGATGC-CATGTTCCAGACATGG
1 TCTTACACTGGCTCTCATCTTGAGGCCGATGCACA--TTCCAGACAT-G
* * ** * ** *
79556686 CCTTACTCTGGCTCTCATAATGTGGCCGATGCATGTCCCAGACATG
1 TCTTACACTGGCTCTCATCTTGAGGCCGATGCACATTCCAGACATG
79556732 TCTTACACT
1 TCTTACACT
79556741 AGCACACAAA
Statistics
Matches: 77, Mismatches: 21, Indels: 10
0.71 0.19 0.09
Matches are distributed among these distances:
45 2 0.03
46 32 0.42
47 20 0.26
48 23 0.30
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (46 bp):
TCTTACACTGGCTCTCATCTTGAGGCCGATGCACATTCCAGACATG
Found at i:79557460 original size:13 final size:13
Alignment explanation
Indices: 79557442--79557466 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
79557432 TAAAAGTGCA
79557442 AAAATCATCAAAG
1 AAAATCATCAAAG
79557455 AAAATCATCAAA
1 AAAATCATCAAA
79557467 ATCACTTACT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.64, C:0.16, G:0.04, T:0.16
Consensus pattern (13 bp):
AAAATCATCAAAG
Found at i:79567955 original size:47 final size:47
Alignment explanation
Indices: 79567892--79568354 Score: 701
Period size: 47 Copynumber: 9.6 Consensus size: 47
79567882 CCCTTCGGGA
* * * * *
79567892 CTTATCACATTTATACAATTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79567939 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79567986 CTCATCACATATATACACTTTCACATTCATCACATCGGCTATTACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACA-T--T--CAT---C----ACATCGGCCATTAGGC
79568045 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79568092 CTTATCACATATATATACACTTTCGCATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79568141 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79568188 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79568235 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79568282 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79568329 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
79568355 CACAATTATC
Statistics
Matches: 387, Mismatches: 15, Indels: 28
0.90 0.03 0.07
Matches are distributed among these distances:
47 289 0.75
48 1 0.00
49 46 0.12
50 1 0.00
51 1 0.00
52 3 0.01
54 3 0.01
55 1 0.00
56 1 0.00
58 1 0.00
59 40 0.10
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79577840 original size:55 final size:55
Alignment explanation
Indices: 79577779--79577899 Score: 134
Period size: 55 Copynumber: 2.2 Consensus size: 55
79577769 CTGCCAAAAC
* * ** *
79577779 AACACGGGTGTGCAACACGCCCATGCCCTGAAACCGTGGCCAAACCTATCAAATT
1 AACACGGGCGTGCAACACGCCCATACCAAGAAACCGTAGCCAAACCTATCAAATT
* * * * * * *
79577834 AACACGGGCGTGCGACACTCCCGTACCAAGAAACCGTAGTCAAACCTGTTAGATT
1 AACACGGGCGTGCAACACGCCCATACCAAGAAACCGTAGCCAAACCTATCAAATT
79577889 AACACGGGCGT
1 AACACGGGCGT
79577900 AGGACTACAT
Statistics
Matches: 54, Mismatches: 12, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
55 54 1.00
ACGTcount: A:0.31, C:0.31, G:0.22, T:0.17
Consensus pattern (55 bp):
AACACGGGCGTGCAACACGCCCATACCAAGAAACCGTAGCCAAACCTATCAAATT
Found at i:79579805 original size:11 final size:11
Alignment explanation
Indices: 79579789--79579824 Score: 63
Period size: 11 Copynumber: 3.2 Consensus size: 11
79579779 CATTGATAAT
79579789 TTTTAATTTTA
1 TTTTAATTTTA
79579800 TTTTAATTTTAA
1 TTTTAATTTT-A
79579812 TTTTAATTTTA
1 TTTTAATTTTA
79579823 TT
1 TT
79579825 AATTTCACCT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
11 13 0.54
12 11 0.46
ACGTcount: A:0.28, C:0.00, G:0.00, T:0.72
Consensus pattern (11 bp):
TTTTAATTTTA
Found at i:79579808 original size:6 final size:6
Alignment explanation
Indices: 79579789--79579822 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
79579779 CATTGATAAT
79579789 TTTTAA TTTT-A TTTTAA TTTTAA TTTTAA TTTTA
1 TTTTAA TTTTAA TTTTAA TTTTAA TTTTAA TTTTA
79579823 TTAATTTCAC
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 5 0.19
6 22 0.81
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (6 bp):
TTTTAA
Found at i:79579808 original size:18 final size:18
Alignment explanation
Indices: 79579789--79579822 Score: 61
Period size: 17 Copynumber: 1.9 Consensus size: 18
79579779 CATTGATAAT
79579789 TTTTAATTTT-ATTTTAA
1 TTTTAATTTTAATTTTAA
79579806 TTTTAATTTTAATTTTA
1 TTTTAATTTTAATTTTA
79579823 TTAATTTCAC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 10 0.62
18 6 0.38
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (18 bp):
TTTTAATTTTAATTTTAA
Found at i:79586249 original size:38 final size:38
Alignment explanation
Indices: 79586198--79586273 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
79586188 TTCAGGATTG
79586198 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
1 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
* *
79586236 TTAAGCAAAACCATATCTCTTACTAATATTGTTACTAC
1 TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
79586274 ATTTTGAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.39, C:0.20, G:0.05, T:0.36
Consensus pattern (38 bp):
TTAAGAAAAACCATAACTCTTACTAATATTGTTACTAC
Found at i:79586676 original size:33 final size:34
Alignment explanation
Indices: 79586634--79586727 Score: 88
Period size: 33 Copynumber: 2.8 Consensus size: 34
79586624 GCACAACTGG
* *
79586634 GCCTAAGCCCATATCAGTCGT-AATATCAGTGT-A
1 GCCTTAGCCCATATCAGT-ATCAATATCAGTGTGA
* *
79586667 GCCTTAGCCCA-ATACAGTATCAGTATCAGTGTGG
1 GCCTTAGCCCATAT-CAGTATCAATATCAGTGTGA
* *
79586701 GCGTTAGCCCATATCAGTA-CAGTATCA
1 GCCTTAGCCCATATCAGTATCAATATCA
79586728 TAAATGCCTA
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
32 3 0.06
33 32 0.62
34 15 0.29
35 2 0.04
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (34 bp):
GCCTTAGCCCATATCAGTATCAATATCAGTGTGA
Found at i:79595204 original size:16 final size:16
Alignment explanation
Indices: 79595185--79595215 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
79595175 TTATAAACAC
*
79595185 ATATCATTATTTCATT
1 ATATCAATATTTCATT
79595201 ATATCAATATTTCAT
1 ATATCAATATTTCAT
79595216 ATACCATAGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.13, G:0.00, T:0.52
Consensus pattern (16 bp):
ATATCAATATTTCATT
Found at i:79597100 original size:30 final size:30
Alignment explanation
Indices: 79597066--79597126 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79597056 TCCTTAACTC
79597066 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
79597096 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
79597126 A
1 A
79597127 GGCTCGTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:79597265 original size:57 final size:57
Alignment explanation
Indices: 79597193--79597305 Score: 217
Period size: 57 Copynumber: 2.0 Consensus size: 57
79597183 TTTCCCTTCT
*
79597193 ATGGCAACATCAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACA
1 ATGGCAACATAAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACA
79597250 ATGGCAACATAAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTAC
1 ATGGCAACATAAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTAC
79597306 TGATTAAGCC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.35, C:0.19, G:0.09, T:0.37
Consensus pattern (57 bp):
ATGGCAACATAAAATTCTCACTCTAACATATACTTATGACTATTAGGTATTTTTACA
Found at i:79602052 original size:46 final size:45
Alignment explanation
Indices: 79601980--79602339 Score: 270
Period size: 46 Copynumber: 7.8 Consensus size: 45
79601970 GTAACCCGCC
* * *
79601980 CCTAAGTGAACTCGGACTCAATTCAACGAGCTCGGGCGTTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
79602025 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * ** *
79602075 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
79602118 CCGTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * ** *
79602168 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
*
79602211 CCGTAAGTGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG--G-C--GTTCGCAT
* * * ** *
79602261 -CTCA-CGAACTCGGACTCAACTCAACGAGTTCGAACATTCGCAT
1 CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
79602304 CCGTAAGTGAACTCAGACTCAACTCAACGAGTTCGG
1 CC-TAAGTGAACTCAGACTCAACTCAACGAGTTCGG
79602340 ATGCTCAACC
Statistics
Matches: 244, Mismatches: 43, Indels: 55
0.71 0.13 0.16
Matches are distributed among these distances:
42 6 0.02
43 9 0.04
44 6 0.02
45 8 0.03
46 108 0.44
47 78 0.32
48 7 0.03
49 6 0.02
50 9 0.04
51 7 0.03
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (45 bp):
CCTAAGTGAACTCAGACTCAACTCAACGAGTTCGGGCGTTCGCAT
Found at i:79602092 original size:47 final size:47
Alignment explanation
Indices: 79602033--79602292 Score: 279
Period size: 47 Copynumber: 5.6 Consensus size: 47
79602023 ATCCATAAGT
79602033 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
79602080 GAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTCGCATCCGTAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
79602126 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
* * * * *
79602173 GAACTCGGACTCAACTCAACGAGTTC-GA--AC-A-TTCGCATCCGTAAGT
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA-C
79602219 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
1 GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
*
79602266 GAACTCGGACTCAACTCAACGAGTTCG
1 GAACTCAGACTCAACTCAACGAGTTCG
79602293 AACATTCGCA
Statistics
Matches: 174, Mismatches: 21, Indels: 36
0.75 0.09 0.16
Matches are distributed among these distances:
42 4 0.02
43 8 0.05
44 4 0.02
45 4 0.02
46 54 0.31
47 80 0.46
48 4 0.02
49 4 0.02
50 8 0.05
51 4 0.02
ACGTcount: A:0.30, C:0.29, G:0.18, T:0.22
Consensus pattern (47 bp):
GAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79602099 original size:93 final size:93
Alignment explanation
Indices: 79601987--79602343 Score: 660
Period size: 93 Copynumber: 3.8 Consensus size: 93
79601977 GCCCCTAAGT
* * ** * *
79601987 GAACTCGGACTCAATTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
79602052 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
79602080 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
79602145 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
79602173 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
79602238 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
79602266 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
79602331 CGAGTTCGGATGC
66 CGAGTTCGGATGC
79602344 TCAACCATCC
Statistics
Matches: 258, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
93 258 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGAACATTCGCATCCGTAAGTGAACTCAGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:79616868 original size:17 final size:17
Alignment explanation
Indices: 79616842--79616881 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
79616832 GTATGAGTTA
79616842 TGTA-TGTTAAATGATG
1 TGTATTGTTAAATGATG
*
79616858 TGTATTGTTAAATGTTG
1 TGTATTGTTAAATGATG
79616875 TGTATTG
1 TGTATTG
79616882 ATTGGTAATA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (17 bp):
TGTATTGTTAAATGATG
Found at i:79619978 original size:42 final size:42
Alignment explanation
Indices: 79619919--79620014 Score: 147
Period size: 42 Copynumber: 2.3 Consensus size: 42
79619909 CATACAGACA
* * *
79619919 AGACACACACCCGTGTTCTAGGCCATGTAGCTCTCACGGCTG
1 AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
* *
79619961 AGACACACGCCCCTGTTCTAGGTAATGTAGCTCACACGGCTG
1 AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
79620003 AGACACACACCC
1 AGACACACACCC
79620015 ATGACTCTGC
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
42 48 1.00
ACGTcount: A:0.25, C:0.34, G:0.22, T:0.19
Consensus pattern (42 bp):
AGACACACACCCCTGTTCTAGGCAATGTAGCTCACACGGCTG
Found at i:79626534 original size:30 final size:30
Alignment explanation
Indices: 79626500--79626560 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
79626490 TCCTTAACTC
79626500 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
79626530 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
79626560 A
1 A
79626561 GGCTCGTGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:79627807 original size:27 final size:27
Alignment explanation
Indices: 79627771--79628098 Score: 363
Period size: 27 Copynumber: 12.2 Consensus size: 27
79627761 GGCCGAAATG
* * *
79627771 ATGATCGAAATACCCTTATAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
79627798 ATGACCGAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
79627825 ATGACCGAAATACCCCCATAGTGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
79627852 ATAACCAAAATACCCCTATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
79627879 ATGACCGAAATATCCCC-ATAGGATAAA
1 ATGACCGAAATA-CCCCTATAGGGTAAA
* *
79627906 ATGATCGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* *
79627933 ATGACTGAAATACCCCCATAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
*
79627960 ATGACCGAAATACCCCTATAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * **
79627987 ATGACTGTAATACCCCTGCAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* ** * *
79628014 ATGACAGTGATA-CACTTTAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * *
79628040 ATGACTGTAATACCCCTGTAGGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
* * * * *
79628067 ATGGCTGTAATACCCCTGTAAGGTAAA
1 ATGACCGAAATACCCCTATAGGGTAAA
79628094 ATGAC
1 ATGAC
79628099 TGATTTGCCC
Statistics
Matches: 262, Mismatches: 36, Indels: 6
0.86 0.12 0.02
Matches are distributed among these distances:
26 25 0.10
27 233 0.89
28 4 0.02
ACGTcount: A:0.40, C:0.20, G:0.18, T:0.21
Consensus pattern (27 bp):
ATGACCGAAATACCCCTATAGGGTAAA
Found at i:79641349 original size:49 final size:47
Alignment explanation
Indices: 79641245--79641421 Score: 164
Period size: 48 Copynumber: 3.7 Consensus size: 47
79641235 ATAGTACAAT
* * * *
79641245 GTCGATGCCATGTTCC-AAACATGGTCTTACACTGGCTCATATATCTAA
1 GTCGATGCCATG-TCCTAGACA-GGTCTTACACTGTCTCATATATCGAG
*
79641293 GTCGATGCCATGTCCTAGACAGGTCTTACACTGATTTTCATATATCGAG
1 GTCGATGCCATGTCCTAGACAGGTCTTACACTG--TCTCATATATCGAG
* * *
79641342 GTTGATGCCATGTCCCAGACAGG-CTTACACTGGCTCTCATCTATCG-G
1 GTCGATGCCATGTCCTAGACAGGTCTTACACT-G-TCTCATATATCGAG
* *
79641389 TGTCAATGCCATGT-CTCAGACAAGTCTTACACT
1 -GTCGATGCCATGTCCT-AGACAGGTCTTACACT
79641422 AACACATGTC
Statistics
Matches: 108, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
47 17 0.16
48 51 0.47
49 40 0.37
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (47 bp):
GTCGATGCCATGTCCTAGACAGGTCTTACACTGTCTCATATATCGAG
Found at i:79641447 original size:22 final size:22
Alignment explanation
Indices: 79641422--79641463 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
79641412 GTCTTACACT
79641422 AACACATGTCAAGCTGATGCAG
1 AACACATGTCAAGCTGATGCAG
*
79641444 AACACATGTCAAGTTGATGC
1 AACACATGTCAAGCTGATGC
79641464 CATGTCCCAG
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.21, G:0.21, T:0.21
Consensus pattern (22 bp):
AACACATGTCAAGCTGATGCAG
Found at i:79641530 original size:48 final size:46
Alignment explanation
Indices: 79641459--79641583 Score: 153
Period size: 46 Copynumber: 2.7 Consensus size: 46
79641449 ATGTCAAGTT
*
79641459 GATGCCATGTCCCAGACAAGTCTTACACTAGCT-TGCATATCTCAAGGCC
1 GATG-CATGTCCCAGACATGTCTTACACTAGCTCT-C--ATCTCAAGGCC
* * * * *
79641508 GATGCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAATGTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
79641554 GATGCATGTCCCAGACATGTCTTACACTAG
1 GATGCATGTCCCAGACATGTCTTACACTAG
79641584 TACACATATC
Statistics
Matches: 67, Mismatches: 8, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
46 36 0.54
48 26 0.39
49 5 0.07
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATCTCAAGGCC
Found at i:79646038 original size:43 final size:43
Alignment explanation
Indices: 79645985--79646096 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 43
79645975 TAGGATTATA
79645985 GTTATGTGATTACGTGTAAAACCAT-GTCTAGGAC-ATTGGCATC
1 GTTATGTGATTACGTGTAAAACCATAG-CTAGG-CTATTGGCATC
* * *
79646028 GTTATTTGATTTCGTGTAAGACCATAGCTAGGCTATTGGCATC
1 GTTATGTGATTACGTGTAAAACCATAGCTAGGCTATTGGCATC
* * *
79646071 GATATGTGATAACATGTAAAACCATA
1 GTTATGTGATTACGTGTAAAACCATA
79646097 TCCAGGATAT
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
42 1 0.02
43 56 0.97
44 1 0.02
ACGTcount: A:0.30, C:0.15, G:0.21, T:0.33
Consensus pattern (43 bp):
GTTATGTGATTACGTGTAAAACCATAGCTAGGCTATTGGCATC
Found at i:79648508 original size:25 final size:25
Alignment explanation
Indices: 79648480--79648527 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
79648470 TCATATCATG
* *
79648480 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACTGTTATACCCCTAGGTA
79648505 AAAATGACTGTTATACCCCTAGG
1 AAAATGACTGTTATACCCCTAGG
79648528 GTTTACTTAT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (25 bp):
AAAATGACTGTTATACCCCTAGGTA
Found at i:79648589 original size:20 final size:20
Alignment explanation
Indices: 79648563--79648609 Score: 69
Period size: 20 Copynumber: 2.4 Consensus size: 20
79648553 ATTTTGATAT
79648563 ACATGAT-TGATATGATATGC
1 ACATGATATG-TATGATATGC
*
79648583 TCATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
79648603 ACATGAT
1 ACATGAT
79648610 GTATTCATAA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 22 0.92
21 2 0.08
ACGTcount: A:0.34, C:0.11, G:0.19, T:0.36
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:79648731 original size:25 final size:25
Alignment explanation
Indices: 79648659--79648755 Score: 124
Period size: 25 Copynumber: 3.8 Consensus size: 25
79648649 GAGGAAGTGC
79648659 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTT-TGCCCCAGTTTATTG
*
79648685 AAAAAGGGCTGATGCCCC-GTTTATTG
1 -AAAAGGGCT-TTGCCCCAGTTTATTG
***
79648711 AAAAGGGCTTTGCCCCAGTTTACCC
1 AAAAGGGCTTTGCCCCAGTTTATTG
79648736 AAAAGGGCTTTGCCCCAGTT
1 AAAAGGGCTTTGCCCCAGTT
79648756 ATTAAAGAGG
Statistics
Matches: 63, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
24 6 0.10
25 34 0.54
26 8 0.13
27 15 0.24
ACGTcount: A:0.26, C:0.24, G:0.24, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTGCCCCAGTTTATTG
Found at i:79649297 original size:17 final size:17
Alignment explanation
Indices: 79649275--79649310 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
79649265 AATAAGGCCA
79649275 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
79649292 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
79649309 TT
1 TT
79649311 CTTTTCTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAACTTTATTTTCT
Found at i:79656662 original size:25 final size:25
Alignment explanation
Indices: 79656634--79656681 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
79656624 TTATATCATG
* * *
79656634 AAAATGACTGTTTTGCCCCTAGGTA
1 AAAATGACCGTTATACCCCTAGGTA
79656659 AAAATGACCGTTATACCCCTAGG
1 AAAATGACCGTTATACCCCTAGG
79656682 GTTTACTTAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (25 bp):
AAAATGACCGTTATACCCCTAGGTA
Found at i:79656761 original size:20 final size:21
Alignment explanation
Indices: 79656716--79656763 Score: 66
Period size: 20 Copynumber: 2.4 Consensus size: 21
79656706 GATTTTGATA
79656716 TACATGATTGATATGATATGC
1 TACATGATTGATATGATATGC
79656737 T-CATGATATG-TATGATATG-
1 TACATGAT-TGATATGATATGC
79656756 TACATGAT
1 TACATGAT
79656764 GTATTCATAA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
19 1 0.04
20 21 0.84
21 3 0.12
ACGTcount: A:0.33, C:0.08, G:0.19, T:0.40
Consensus pattern (21 bp):
TACATGATTGATATGATATGC
Found at i:79656842 original size:25 final size:26
Alignment explanation
Indices: 79656813--79656936 Score: 162
Period size: 26 Copynumber: 4.8 Consensus size: 26
79656803 GAGGAAGTGC
* *
79656813 AAAAAGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
79656839 AAAAATGGCTTATGCCCCAGTTTATTG
1 -AAAAGGGCTTATGCCCCAGTTTATTG
*
79656866 AAAAGGACTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
* **
79656892 AAAAGGGCTT-TGTCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
79656917 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
79656937 ATTAAAGAGG
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
25 31 0.35
26 33 0.38
27 24 0.27
ACGTcount: A:0.28, C:0.20, G:0.21, T:0.31
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:79656842 original size:26 final size:26
Alignment explanation
Indices: 79656813--79656948 Score: 156
Period size: 25 Copynumber: 5.3 Consensus size: 26
79656803 GAGGAAGTGC
*
79656813 AAAAAGGCTTATGCCCTAGTTTATTG
1 AAAAAGGCTTATGCCCCAGTTTATTG
79656839 AAAAATGGCTTATGCCCCAGTTTATTG
1 AAAAA-GGCTTATGCCCCAGTTTATTG
79656866 -AAAAGGACTTATGCCCCAGTTTATTG
1 AAAAAGG-CTTATGCCCCAGTTTATTG
* * **
79656892 AAAAGGGCTT-TGTCCCAGTTTACCG
1 AAAAAGGCTTATGCCCCAGTTTATTG
*
79656917 AAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAAGGCTTATGCCCCAGTTTATTG
*
79656940 AAAGAGGCT
1 AAAAAGGCT
79656949 AGGCCTCCAG
Statistics
Matches: 97, Mismatches: 10, Indels: 9
0.84 0.09 0.08
Matches are distributed among these distances:
23 7 0.07
24 3 0.03
25 31 0.32
26 31 0.32
27 25 0.26
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.30
Consensus pattern (26 bp):
AAAAAGGCTTATGCCCCAGTTTATTG
Found at i:79657478 original size:17 final size:17
Alignment explanation
Indices: 79657456--79657491 Score: 72
Period size: 17 Copynumber: 2.1 Consensus size: 17
79657446 AATAAGGCCA
79657456 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
79657473 TTTTAACTTTATTTTCT
1 TTTTAACTTTATTTTCT
79657490 TT
1 TT
79657492 CTTTTCTGGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.17, C:0.11, G:0.00, T:0.72
Consensus pattern (17 bp):
TTTTAACTTTATTTTCT
Found at i:79659308 original size:37 final size:37
Alignment explanation
Indices: 79659244--79659352 Score: 164
Period size: 37 Copynumber: 2.9 Consensus size: 37
79659234 AGCTCAGATG
* * *
79659244 AAATCTCCACACGAAGTTATCGAGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79659281 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGGCA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
* *
79659318 TAATCTCCACATGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79659353 ATATATTTCC
Statistics
Matches: 65, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 65 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79659554 original size:48 final size:48
Alignment explanation
Indices: 79659499--79660235 Score: 1021
Period size: 48 Copynumber: 15.0 Consensus size: 48
79659489 ACGCATCGCC
*
79659499 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79659547 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * *
79659597 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTTA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
79659645 GACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
79659697 TATATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCA
*
79659745 GACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* * *
79659797 TATATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
79659849 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79659897 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
*
79659945 TACATATTTCACATTAGCCATTCGGCTTTACCACATATGCATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79659993 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--A
* * * *
79660043 TATATATTTCACATTAACCATTCAGCTTTACCATATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
* * * *
79660091 TATATATTTCGCATTAACCATTCAGCTTTACCACATATACATATCTCATTTA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----A
* *
79660143 TATATATTTCGCATTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
79660191 TACATATTTCACATTAGCCATTCGGCTTTACCA-ATATACATATCT
1 TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
79660236 TATGCATCAA
Statistics
Matches: 632, Mismatches: 37, Indels: 41
0.89 0.05 0.06
Matches are distributed among these distances:
47 12 0.02
48 348 0.55
49 3 0.00
50 86 0.14
51 1 0.00
52 182 0.29
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (48 bp):
TACATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:79659749 original size:100 final size:96
Alignment explanation
Indices: 79659502--79660235 Score: 1024
Period size: 100 Copynumber: 7.4 Consensus size: 96
79659492 CATCGCCTAC
* *
79659502 ATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACACTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
79659567 TTCGGCTTTACCACATATACATATCTCATATAT
66 TTCGGCTTTACCACATATACATATCTC--ATAT
* * *
79659600 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTTAGACATATTTCACATTAGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
79659664 ATTCGGCTTTACCACATATACATATCTCATATATAT
65 ATTCGGCTTTACCACATATACATATCTC----ATAT
* *
79659700 ATATTTCACATT-GACCATTCGGCTTTACCACATATGCATATCTCAGACATATTTCACATTAGCC
1 ATATTTCACATTAG-CCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCC
79659764 ATTCGGCTTTACCACATATACATATCTCATATATAT
65 ATTCGGCTTTACCACATATACATATCTC----ATAT
* * * *
79659800 ATATTTCACATTAACCATTCAGCTTTACCACATATACATATCTCATATATATATATTTCGCATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTA
*
79659865 GCCATTCGGCTTTACCACATATACATATCTCATAC
62 GCCATTCGGCTTTACCACATATACATATCTCATAT
*
79659900 ATATTTCACATTAGCCATTCGGCTTTACCACATATACGTATCTCATACATATTTCACATTAGCCA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
* *
79659965 TTCGGCTTTACCACATATGCATATCTCATAC
66 TTCGGCTTTACCACATATACATATCTCATAT
* *
79659996 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATATATATATTTCACATTAAC
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC--ATACATATTTCACATTAGC
* *
79660061 CATTCAGCTTTACCATATATACATATCTCATAT
64 CATTCGGCTTTACCACATATACATATCTCATAT
* * * * *
79660094 ATATTTCGCATTAACCATTCAGCTTTACCACATATACATATCTCATTTATATATATTTCGCATTA
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTC----ATACATATTTCACATTA
*
79660159 GCCATTCGGCTTTACCACATATACATATCTCATAC
62 GCCATTCGGCTTTACCACATATACATATCTCATAT
79660194 ATATTTCACATTAGCCATTCGGCTTTACCA-ATATACATATCT
1 ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCT
79660236 TATGCATCAA
Statistics
Matches: 586, Mismatches: 38, Indels: 23
0.91 0.06 0.04
Matches are distributed among these distances:
96 92 0.16
97 1 0.00
98 172 0.29
99 12 0.02
100 264 0.45
104 45 0.08
ACGTcount: A:0.31, C:0.25, G:0.07, T:0.37
Consensus pattern (96 bp):
ATATTTCACATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCACATTAGCCA
TTCGGCTTTACCACATATACATATCTCATAT
Found at i:79665327 original size:33 final size:33
Alignment explanation
Indices: 79665285--79665350 Score: 123
Period size: 33 Copynumber: 2.0 Consensus size: 33
79665275 AATAACCATC
*
79665285 TAGAAAACAATAGAAGACTTTTCCTGGTAATCT
1 TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
79665318 TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
1 TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
79665351 ATCTAACATC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.39, C:0.17, G:0.15, T:0.29
Consensus pattern (33 bp):
TAGAAAACAATAGAAGACTTTCCCTGGTAATCT
Found at i:79666546 original size:46 final size:46
Alignment explanation
Indices: 79666493--79666629 Score: 193
Period size: 46 Copynumber: 3.0 Consensus size: 46
79666483 TATATATACA
* * * *
79666493 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* * *
79666539 CATCTCATACACGTTTCGCATTAGTCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
79666585 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
79666630 ATACAAGTTC
Statistics
Matches: 79, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
46 79 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:79666664 original size:47 final size:47
Alignment explanation
Indices: 79666603--79667741 Score: 1927
Period size: 47 Copynumber: 24.1 Consensus size: 47
79666593 ACACATTTCG
* * * * ** *
79666603 CATTAGCCATTCGGCCTTACCACATATATACAAGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
* * * *
79666650 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79666697 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
* *
79666744 CATTGGCCATTCGGCCTTATCACACATACGTATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
*
79666791 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79666838 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79666885 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79666932 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79666979 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667026 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667073 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667120 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667167 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667214 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667261 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667308 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667355 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667402 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
*
79667449 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
*
79667496 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
* * ** *
79667543 CATTGGCCATTCGGCCTTATCACGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCA--C--ACATACGCATGTTCACATTCATCA
* *
79667594 CATTGGCCACTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
* * *** *
79667641 CATTGGCCATTCGGCCTTATCACGCATATATATATAGGTTCACATTAATCA
1 CATTGGCCATTCGGCCCTATCA--CACATACGCAT--GTTCACATTCATCA
* *
79667692 CATTGGCCACTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
79667739 CAT
1 CAT
79667742 AAAATCCTAA
Statistics
Matches: 1049, Mismatches: 35, Indels: 16
0.95 0.03 0.01
Matches are distributed among these distances:
47 958 0.91
49 16 0.02
51 75 0.07
ACGTcount: A:0.26, C:0.32, G:0.13, T:0.29
Consensus pattern (47 bp):
CATTGGCCATTCGGCCCTATCACACATACGCATGTTCACATTCATCA
Found at i:79677383 original size:34 final size:34
Alignment explanation
Indices: 79677334--79677399 Score: 96
Period size: 34 Copynumber: 1.9 Consensus size: 34
79677324 TGGACTATGA
* * *
79677334 ATTTGACTGATTTGACTGTGATTGTATGACTGTG
1 ATTTAACTGACTTGACAGTGATTGTATGACTGTG
*
79677368 ATTTAACTGACTTGACAGTGGTTGTATGACTG
1 ATTTAACTGACTTGACAGTGATTGTATGACTG
79677400 ATATGCTTTT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
34 28 1.00
ACGTcount: A:0.23, C:0.11, G:0.26, T:0.41
Consensus pattern (34 bp):
ATTTAACTGACTTGACAGTGATTGTATGACTGTG
Found at i:79677808 original size:32 final size:32
Alignment explanation
Indices: 79677750--79677817 Score: 82
Period size: 32 Copynumber: 2.1 Consensus size: 32
79677740 ATTACCGTCG
*
79677750 CTGATGGCTATGTGCCAAACAAAATACAGTTA
1 CTGATGGCTATGTGCCAAACAAAATACAGCTA
* ** * *
79677782 CTGATGGCTTTGTGCCAATTATAATACCGCTA
1 CTGATGGCTATGTGCCAAACAAAATACAGCTA
79677814 CTGA
1 CTGA
79677818 AGGGTTAAAG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.21, G:0.19, T:0.29
Consensus pattern (32 bp):
CTGATGGCTATGTGCCAAACAAAATACAGCTA
Found at i:79680209 original size:58 final size:58
Alignment explanation
Indices: 79680119--79680230 Score: 224
Period size: 58 Copynumber: 1.9 Consensus size: 58
79680109 AATTTTGTGC
79680119 TTCTAGCAGTGTCTACCGAACCATTTATCGCCCTTTGTGCAAATCTGTCGAAAAATGG
1 TTCTAGCAGTGTCTACCGAACCATTTATCGCCCTTTGTGCAAATCTGTCGAAAAATGG
79680177 TTCTAGCAGTGTCTACCGAACCATTTATCGCCCTTTGTGCAAATCTGTCGAAAA
1 TTCTAGCAGTGTCTACCGAACCATTTATCGCCCTTTGTGCAAATCTGTCGAAAA
79680231 TAATAAAAAA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
58 54 1.00
ACGTcount: A:0.26, C:0.25, G:0.18, T:0.31
Consensus pattern (58 bp):
TTCTAGCAGTGTCTACCGAACCATTTATCGCCCTTTGTGCAAATCTGTCGAAAAATGG
Found at i:79684061 original size:49 final size:49
Alignment explanation
Indices: 79684001--79684173 Score: 220
Period size: 49 Copynumber: 3.5 Consensus size: 49
79683991 CTGGTAGGCA
* *
79684001 TAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACATG
1 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
* * * * * ***
79684050 TAATAGCCTGCACTTAGTACTACACACGTGATCACAGTTTTCGGGTACGCA
1 TAATAGCCTGCACTTAGTACTACACATGCGA-C-CAATTATCCGGTACATG
*
79684101 TAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
1 TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
*
79684150 TAGTAGCCTGCACTTAGTACTACA
1 TAATAGCCTGCACTTAGTACTACA
79684174 AACGTGACCT
Statistics
Matches: 104, Mismatches: 18, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
49 64 0.62
50 2 0.02
51 38 0.37
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.27
Consensus pattern (49 bp):
TAATAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATG
Found at i:79684113 original size:100 final size:100
Alignment explanation
Indices: 79683993--79684180 Score: 322
Period size: 100 Copynumber: 1.9 Consensus size: 100
79683983 GAAGCTATCT
* *
79683993 GGTAGGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCTGGTACATGTAATAGCC
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATGTAATAGCC
*
79684058 TGCACTTAGTACTACACACGTGATCACAGTTTTCG
66 TGCACTTAGTACTACAAACGTGATCACAGTTTTCG
* * *
79684093 GGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATTATCCGGTACATGTAGTAGCC
1 GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATGTAATAGCC
79684158 TGCACTTAGTACTACAAACGTGA
66 TGCACTTAGTACTACAAACGTGA
79684181 CCTCACAATA
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
100 82 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (100 bp):
GGTACGCATAATAGCCTGCACTTAGTACTACACATGCGACCAATAATCCGGTACATGTAATAGCC
TGCACTTAGTACTACAAACGTGATCACAGTTTTCG
Found at i:79686536 original size:17 final size:18
Alignment explanation
Indices: 79686509--79686544 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
79686499 AATCAAATAT
79686509 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
79686527 ATGC-TATTAATTTATTA
1 ATGCATATTAAATTATTA
79686544 A
1 A
79686545 GACAAGATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.42, C:0.06, G:0.06, T:0.47
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:79686627 original size:17 final size:17
Alignment explanation
Indices: 79686587--79686627 Score: 50
Period size: 15 Copynumber: 2.4 Consensus size: 17
79686577 AGTTGATAAA
79686587 AATTAATATATCAATTAT
1 AATTAA-ATATCAATTAT
79686605 AA-TAAATAT-AATTAT
1 AATTAAATATCAATTAT
79686620 ATATTAAA
1 A-ATTAAA
79686628 GATTATCATC
Statistics
Matches: 21, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
15 7 0.33
16 5 0.24
17 7 0.33
18 2 0.10
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.41
Consensus pattern (17 bp):
AATTAAATATCAATTAT
Found at i:79702528 original size:40 final size:40
Alignment explanation
Indices: 79702471--79702617 Score: 222
Period size: 40 Copynumber: 3.7 Consensus size: 40
79702461 CAATATATTA
* **
79702471 TATATCCGGGTTCAATCCCATAGGCTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
79702511 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
* * *
79702551 TATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAATG
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
* *
79702591 TATATCCAGGTTAAAACCCGCAGGCTT
1 TATATCCGGGTTAAATCCCGCAGGCTT
79702618 AGTGCTAGTA
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.22, C:0.21, G:0.24, T:0.32
Consensus pattern (40 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGTTGGTAATG
Found at i:79702652 original size:80 final size:80
Alignment explanation
Indices: 79702471--79702657 Score: 207
Period size: 80 Copynumber: 2.3 Consensus size: 80
79702461 CAATATATTA
* * ** * * * *
79702471 TATATCCGGGTTCAATCCCATAGGCTTCGTGTTGGTAATGTATATCCGGGTTAAATCCCGCAGGC
1 TATATCCGGGATAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
* * * *
79702536 TTCGTGTTGGTAATG
66 TTAGTGCTAGTAATC
* *
79702551 TATATCTGGGTTAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
1 TATATCCGGGATAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
79702616 TTAGTGCTAGT-A-C
66 TTAGTGCTAGTAATC
*
79702629 TATATCCGGGCATAAAGTTCCGCAGGCTT
1 TATATCCGGG-ATAAA-TCCCGCAGGCTT
79702658 TGAGCTAGTA
Statistics
Matches: 90, Mismatches: 15, Indels: 4
0.83 0.14 0.04
Matches are distributed among these distances:
78 9 0.10
79 5 0.06
80 76 0.84
ACGTcount: A:0.23, C:0.21, G:0.25, T:0.31
Consensus pattern (80 bp):
TATATCCGGGATAAATCCCGCAGGCTTCATGCTGGTAATGTATATCCAGGTTAAAACCCGCAGGC
TTAGTGCTAGTAATC
Found at i:79710571 original size:40 final size:39
Alignment explanation
Indices: 79710527--79710676 Score: 131
Period size: 40 Copynumber: 3.9 Consensus size: 39
79710517 CGATATATTA
* *
79710527 TATATCTGGGTTAAATCCTGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAATCC-GCAGGCTTAGTGCTGGTAATG
79710567 TATATCCGGGTTAAATCC-C--G--TAG-GCT--TAA--
1 TATATCCGGGTTAAATCCGCAGGCTTAGTGCTGGTAATG
* *
79710596 TATATTCGGGTTAAATCCCGCAGGCAGGCTTCGTGCTGGTAATG
1 TATATCCGGGTTAAAT--C-C--GCAGGCTTAGTGCTGGTAATG
79710640 TATATCCGGGTTAAATCCCGCAGGCTTAGTGCTGGTA
1 TATATCCGGGTTAAAT-CCGCAGGCTTAGTGCTGGTA
79710677 CTATATCCGG
Statistics
Matches: 89, Mismatches: 6, Indels: 30
0.71 0.05 0.24
Matches are distributed among these distances:
29 15 0.17
31 4 0.04
32 1 0.01
33 3 0.03
34 2 0.02
35 1 0.01
36 1 0.01
37 1 0.01
38 1 0.01
39 2 0.02
40 37 0.42
42 4 0.04
43 2 0.02
44 15 0.17
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (39 bp):
TATATCCGGGTTAAATCCGCAGGCTTAGTGCTGGTAATG
Found at i:79715759 original size:13 final size:13
Alignment explanation
Indices: 79715741--79715766 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
79715731 GCTCGGCAGG
79715741 GACACGCCTGTGT
1 GACACGCCTGTGT
79715754 GACACGCCTGTGT
1 GACACGCCTGTGT
79715767 TCGAGCCTGC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.31, G:0.31, T:0.23
Consensus pattern (13 bp):
GACACGCCTGTGT
Found at i:79718393 original size:19 final size:20
Alignment explanation
Indices: 79718358--79718395 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79718348 TTGAAAAGGT
79718358 AAATAAAGATAAAAGTAAAC
1 AAATAAAGATAAAAGTAAAC
*
79718378 AAATAAATAT-AAAGTAAA
1 AAATAAAGATAAAAGTAAA
79718396 GTCTTTAAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 8 0.47
20 9 0.53
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (20 bp):
AAATAAAGATAAAAGTAAAC
Found at i:79725043 original size:21 final size:19
Alignment explanation
Indices: 79725009--79725052 Score: 52
Period size: 21 Copynumber: 2.2 Consensus size: 19
79724999 TGGGAAAAAT
*
79725009 GAGAGAAAAAGTGAAATAA
1 GAGAGAAAAAGTGAAAGAA
*
79725028 GAGAGAAAAATTGTGAGAGAA
1 GAGAGAAAAA--GTGAAAGAA
79725049 GAGA
1 GAGA
79725053 TGTGAATGAG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 10 0.48
21 11 0.52
ACGTcount: A:0.57, C:0.00, G:0.32, T:0.11
Consensus pattern (19 bp):
GAGAGAAAAAGTGAAAGAA
Found at i:79731719 original size:83 final size:83
Alignment explanation
Indices: 79731580--79731748 Score: 234
Period size: 83 Copynumber: 2.0 Consensus size: 83
79731570 TAGTGATATA
* *
79731580 ATATCAGGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCTTATTGCCTAGCAG
1 ATATCAAGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTGCCTAGCAG
*
79731645 GCTT-TATGTCGGTGTATT
66 G-TTCTATGCCGGTGTATT
* * * *
79731663 ATATCAAGCTTTATTGCCTAGCAGGCTTT-ATGCCTGTGTATTATGTCAGGCCTATTGCCTAGCA
1 ATATCAAGC-TTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTGCCTAGCA
*
79731727 GGTTCTGTGCCGGTGTATT
65 GGTTCTATGCCGGTGTATT
79731746 ATA
1 ATA
79731749 CTAGGGTTTA
Statistics
Matches: 76, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
82 2 0.03
83 56 0.74
84 18 0.24
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (83 bp):
ATATCAAGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTGCCTAGCAG
GTTCTATGCCGGTGTATT
Found at i:79731743 original size:41 final size:41
Alignment explanation
Indices: 79731580--79731748 Score: 223
Period size: 42 Copynumber: 4.1 Consensus size: 41
79731570 TAGTGATATA
* * *
79731580 ATATCAGGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCGGTGTATT
*
79731622 ATATCAGGCTTATTGCCTAGCAGGCTTTATGTCGGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATT
* *
79731663 ATATCAAGCTTTATTGCCTAGCAGGCTTTATGCCTGTGTATT
1 ATATCAGGC-TTATTGCCTAGCAGGCTTTATGCCGGTGTATT
* * *
79731705 ATGTCAGGCCTATTGCCTAGCAGG-TTCTGTGCCGGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTT-TATGCCGGTGTATT
79731746 ATA
1 ATA
79731749 CTAGGGTTTA
Statistics
Matches: 112, Mismatches: 13, Indels: 5
0.86 0.10 0.04
Matches are distributed among these distances:
40 2 0.02
41 46 0.41
42 64 0.57
ACGTcount: A:0.21, C:0.19, G:0.24, T:0.37
Consensus pattern (41 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCGGTGTATT
Found at i:79745995 original size:41 final size:41
Alignment explanation
Indices: 79745905--79746081 Score: 187
Period size: 42 Copynumber: 4.3 Consensus size: 41
79745895 CAGTAATATA
* *
79745905 ATATCAGGCTTATTGCCTAGCAAGCTTTGATGCCAGTGTATG
1 ATATCAGGCTTATTGCCTAGCAGGCTTT-ATGCCAGTGTATT
* *
79745947 ATATCAGGCTTATTGCCTAGTAGGCTTTATGTCAGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCAGTGTATT
* * *
79745988 ATATCAGGCTTTATTGCCTAACAGGCTTTATGTCGGTGTATT
1 ATATCAGGC-TTATTGCCTAGCAGGCTTTATGCCAGTGTATT
* * * * * *
79746030 ATGTTAGGCCTATTACCTAGTAGG-TTCTATGCCGGTGTATT
1 ATATCAGGCTTATTGCCTAGCAGGCTT-TATGCCAGTGTATT
79746071 ATA-CTAGGCTT
1 ATATC-AGGCTT
79746082 TACACCTAGC
Statistics
Matches: 115, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
40 2 0.02
41 51 0.44
42 62 0.54
ACGTcount: A:0.22, C:0.17, G:0.23, T:0.38
Consensus pattern (41 bp):
ATATCAGGCTTATTGCCTAGCAGGCTTTATGCCAGTGTATT
Found at i:79746027 original size:83 final size:84
Alignment explanation
Indices: 79745905--79746083 Score: 213
Period size: 83 Copynumber: 2.2 Consensus size: 84
79745895 CAGTAATATA
* * *
79745905 ATATCAGGC-TTATTGCCTAGCAAGCTTTGATGCCAGTGTATGATATCAGGCTTATTGCCTAGTA
1 ATATCAGGCTTTATTGCCTAACAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTACCTAGTA
*
79745969 GGCTT-TATGTCAGTGTATT
66 GG-TTCTATGCCAGTGTATT
* * * * * *
79745988 ATATCAGGCTTTATTGCCTAACAGGCTTT-ATGTCGGTGTATTATGTTAGGCCTATTACCTAGTA
1 ATATCAGGCTTTATTGCCTAACAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTACCTAGTA
*
79746052 GGTTCTATGCCGGTGTATT
66 GGTTCTATGCCAGTGTATT
79746071 ATA-CTAGGCTTTA
1 ATATC-AGGCTTTA
79746084 CACCTAGCAA
Statistics
Matches: 82, Mismatches: 11, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
82 3 0.04
83 62 0.76
84 17 0.21
ACGTcount: A:0.22, C:0.17, G:0.22, T:0.39
Consensus pattern (84 bp):
ATATCAGGCTTTATTGCCTAACAAGCTTTGATGCCAGTGTATGATATCAGGCCTATTACCTAGTA
GGTTCTATGCCAGTGTATT
Found at i:79756232 original size:37 final size:37
Alignment explanation
Indices: 79756173--79756281 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
79756163 AGCTCAGACG
* * *
79756173 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
79756210 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79756247 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
79756282 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79756552 original size:47 final size:47
Alignment explanation
Indices: 79756490--79757150 Score: 1187
Period size: 47 Copynumber: 14.1 Consensus size: 47
79756480 ACACGTTTCG
* * *
79756490 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
79756537 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
79756584 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
79756631 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
79756678 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
79756725 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
79756772 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
79756819 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
79756866 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
79756913 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
79756960 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
79757007 CATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
79757054 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * **
79757101 CATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
79757148 CAT
1 CAT
79757151 AAAATCCTAA
Statistics
Matches: 597, Mismatches: 17, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 597 1.00
ACGTcount: A:0.26, C:0.29, G:0.12, T:0.33
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:79756631 original size:25 final size:25
Alignment explanation
Indices: 79756602--79756726 Score: 76
Period size: 23 Copynumber: 5.2 Consensus size: 25
79756592 ATTCGGCCTT
79756602 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
79756627 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
79756649 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
79756674 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
79756696 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
79756721 ATCACA
1 ATCACA
79756727 TTGGCCATTC
Statistics
Matches: 74, Mismatches: 8, Indels: 36
0.63 0.07 0.31
Matches are distributed among these distances:
22 12 0.16
23 22 0.30
24 22 0.30
25 18 0.24
ACGTcount: A:0.28, C:0.30, G:0.11, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:79756960 original size:25 final size:25
Alignment explanation
Indices: 79756931--79757055 Score: 67
Period size: 23 Copynumber: 5.2 Consensus size: 25
79756921 ATTCGGCCTT
79756931 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
79756956 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
*
79756978 ATCACATATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
79757003 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
79757025 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
79757050 ATCACA
1 ATCACA
79757056 TTGGCCATTC
Statistics
Matches: 72, Mismatches: 10, Indels: 36
0.61 0.08 0.31
Matches are distributed among these distances:
22 12 0.17
23 21 0.29
24 21 0.29
25 18 0.25
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:79761114 original size:40 final size:40
Alignment explanation
Indices: 79760965--79761105 Score: 183
Period size: 40 Copynumber: 3.5 Consensus size: 40
79760955 AGCATGATTA
* * * *
79760965 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** *
79761005 CTCTTTGGGGTTTAGCACGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
79761045 CTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
79761085 CTCTTCGGGATTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
79761106 CATTTCACTC
Statistics
Matches: 84, Mismatches: 17, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 84 1.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:79762442 original size:37 final size:37
Alignment explanation
Indices: 79762383--79762521 Score: 233
Period size: 37 Copynumber: 3.8 Consensus size: 37
79762373 AGCTCAAACG
* *
79762383 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79762420 AAATCTCCACACGTAGTCATCGGGTCTTACCCAGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79762457 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
79762494 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
79762522 TAGAGCTCGG
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 97 1.00
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:79762908 original size:49 final size:47
Alignment explanation
Indices: 79762640--79763038 Score: 645
Period size: 47 Copynumber: 8.4 Consensus size: 47
79762630 CCCTTCGGGA
* * * * * * *
79762640 CTTATCATATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
79762687 CCTGTCACATATATACACTTTCACATGCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79762734 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79762781 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79762828 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79762875 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79762924 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79762973 TTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79763020 CTTATCACATATATACACT
1 CTTATCACATATATACACT
79763039 GTCTTGGCTG
Statistics
Matches: 332, Mismatches: 18, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
47 237 0.71
49 95 0.29
ACGTcount: A:0.29, C:0.29, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79765794 original size:13 final size:13
Alignment explanation
Indices: 79765758--79765794 Score: 56
Period size: 13 Copynumber: 2.8 Consensus size: 13
79765748 TGATAGTTTG
*
79765758 GTATGAATTTATAT
1 GTATG-ATTTGTAT
79765772 GTATGATTTGTAT
1 GTATGATTTGTAT
79765785 GTATGATTTG
1 GTATGATTTG
79765795 CTAATTATCT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
13 17 0.77
14 5 0.23
ACGTcount: A:0.27, C:0.00, G:0.22, T:0.51
Consensus pattern (13 bp):
GTATGATTTGTAT
Found at i:79770417 original size:40 final size:40
Alignment explanation
Indices: 79770372--79770535 Score: 195
Period size: 40 Copynumber: 4.1 Consensus size: 40
79770362 CGAATACACG
* * * * *
79770372 TCACCAGCATGATTACTCTTCGGGACCTAGCCCGGATATA
1 TCACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
* * * *
79770412 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACCAGCACGAATGCTCCTCG-GGACTTAGCCCGGATATA
* * *
79770452 TTACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATACA
1 TCACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
*
79770492 TCACTAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
1 TCACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
79770532 TCAC
1 TCAC
79770536 TCTCAATTCT
Statistics
Matches: 106, Mismatches: 16, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
39 2 0.02
40 102 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
TCACCAGCACGAATGCTCCTCGGGACTTAGCCCGGATATA
Found at i:79770536 original size:40 final size:40
Alignment explanation
Indices: 79770391--79770536 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
79770381 TGATTACTCT
* * * *
79770391 TCGGGACCTAGCCCGGATATAACACCAGCACGAATGCTCT
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
* * *
79770431 TCGAGG-TTTAGCACGGATATATTACTAGCACGAATGCTCC
1 TCG-GGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
*
79770471 TCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCC
1 TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
79770511 TCGGGACTTAGCCCGGATATATCACT
1 TCGGGACTTAGCCCGGATATATCACT
79770537 CTCAATTCTC
Statistics
Matches: 92, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
39 2 0.02
40 88 0.96
41 2 0.02
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
TCGGGACTTAGCCCGGATATATCACTAGCACGAATGCTCC
Found at i:79771808 original size:37 final size:37
Alignment explanation
Indices: 79771747--79771825 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
79771737 TTATTACGAA
* * * *
79771747 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
*
79771784 GTCTTACCCAGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
79771821 GTCTT
1 GTCTT
79771826 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCAGACAAAATCCCCACACGAAGTCATCGG
Found at i:79772022 original size:47 final size:47
Alignment explanation
Indices: 79771944--79773023 Score: 2025
Period size: 47 Copynumber: 22.9 Consensus size: 47
79771934 CCCTTCGGGA
* * * * * *
79771944 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79771991 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772038 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772085 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772132 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772179 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772226 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772273 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772320 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772367 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772414 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772461 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772508 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772555 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772602 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772649 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772696 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772743 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
**
79772790 CCAATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772839 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79772886 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTGGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79772933 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79772980 CTTATCACATATATACACCTTCATATTCATCACATCGGCCATTA
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTA
79773024 CACCATACTA
Statistics
Matches: 1013, Mismatches: 18, Indels: 4
0.98 0.02 0.00
Matches are distributed among these distances:
47 968 0.96
49 45 0.04
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79776289 original size:47 final size:47
Alignment explanation
Indices: 79776218--79776496 Score: 406
Period size: 47 Copynumber: 6.0 Consensus size: 47
79776208 ACCCATAAGT
* * *
79776218 GAACTCAGACTCAACTCAACGAGTTCGGAAGTCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
* * * * * *
79776265 AAACTCGGACTCAACTCAATGAGTTCGGA---C-A-TTCGCATCCATAAGT
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--TTCA-C
79776311 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
79776358 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
79776405 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
79776452 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTC
1 GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTC
79776497 TACTCGGTAG
Statistics
Matches: 210, Mismatches: 13, Indels: 18
0.87 0.05 0.07
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 1 0.00
45 2 0.01
46 27 0.13
47 165 0.79
48 2 0.01
49 1 0.00
50 4 0.02
51 2 0.01
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (47 bp):
GAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:79776841 original size:30 final size:30
Alignment explanation
Indices: 79776807--79776866 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
79776797 ATTTAATACG
*
79776807 AACTTTAATAAAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
** *
79776837 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTAACAAAATTACACTTTTGCCCCTA
79776867 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.32, C:0.25, G:0.05, T:0.38
Consensus pattern (30 bp):
AACTTTAACAAAATTACACTTTTGCCCCTA
Found at i:79801661 original size:21 final size:21
Alignment explanation
Indices: 79801635--79801676 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
79801625 GTTTTACTTT
79801635 TATTCAATTTAGTCTCTGAGC
1 TATTCAATTTAGTCTCTGAGC
79801656 TATTCAATTTAGTCTCTGAGC
1 TATTCAATTTAGTCTCTGAGC
79801677 CTAAAACATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.19, G:0.14, T:0.43
Consensus pattern (21 bp):
TATTCAATTTAGTCTCTGAGC
Found at i:79807376 original size:46 final size:45
Alignment explanation
Indices: 79807326--79807501 Score: 167
Period size: 46 Copynumber: 3.8 Consensus size: 45
79807316 TGGTTGAGCA
79807326 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
79807372 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAATTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
* *
79807419 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * * * **
79807465 CCCGAGCTCATTGAGTTGATTCCGAGTTTTCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
79807502 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 18, Indels: 14
0.77 0.13 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 64 0.61
47 31 0.30
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.28, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:79807482 original size:93 final size:93
Alignment explanation
Indices: 79807323--79807492 Score: 277
Period size: 93 Copynumber: 1.8 Consensus size: 93
79807313 GGATGGTTGA
* * *
79807323 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
79807388 TGAGTCCGAGTTCGAGAGATGTAATTAG
66 TGAGTCCGAGTTCGAGAGATGTAATTAG
* * *
79807416 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGCCCGAGCTCATTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
*
79807481 TGATTCCGAGTT
66 TGAGTCCGAGTT
79807493 TTCTTATGGG
Statistics
Matches: 70, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 70 1.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCATTGAGT
TGAGTCCGAGTTCGAGAGATGTAATTAG
Found at i:79809633 original size:20 final size:20
Alignment explanation
Indices: 79809608--79809646 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
79809598 TGTATTAATA
* *
79809608 AAATTTTACAATTTTTCATC
1 AAATTTTAAAACTTTTCATC
79809628 AAATTTTAAAACTTTTCAT
1 AAATTTTAAAACTTTTCAT
79809647 TTTAGTCCCT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.13, G:0.00, T:0.49
Consensus pattern (20 bp):
AAATTTTAAAACTTTTCATC
Found at i:79819910 original size:35 final size:35
Alignment explanation
Indices: 79819812--79819969 Score: 147
Period size: 35 Copynumber: 4.5 Consensus size: 35
79819802 ACATCGTCAG
* * * *
79819812 TCCAACCATAACATGCTAATGCTCCTAAGATCTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
* * * ** * * *
79819847 TTCAACCAAAATACAACAGTGCTTATAAGAACTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
79819882 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
** * *
79819917 TCTTATCATAACACGCTAATGCTCATAAGAGCTAA
1 TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
*
79819952 TCTAACCGA-AACACGCCA
1 TCCAACC-ATAACACGCCA
79819970 GACAGAGAGT
Statistics
Matches: 96, Mismatches: 26, Indels: 2
0.77 0.21 0.02
Matches are distributed among these distances:
35 95 0.99
36 1 0.01
ACGTcount: A:0.41, C:0.27, G:0.10, T:0.22
Consensus pattern (35 bp):
TCCAACCATAACACGCCAATGCTCATAAGAGCTAA
Found at i:79819944 original size:17 final size:17
Alignment explanation
Indices: 79819888--79819944 Score: 55
Period size: 17 Copynumber: 3.3 Consensus size: 17
79819878 CTAATCCAAC
*
79819888 CATAACACGCCAATGCT
1 CATAACACGCTAATGCT
*
79819905 CATAAGA-GCTAAT-CTTAT
1 CATAACACGCTAATGC---T
79819923 CATAACACGCTAATGCT
1 CATAACACGCTAATGCT
79819940 CATAA
1 CATAA
79819945 GAGCTAATCT
Statistics
Matches: 32, Mismatches: 3, Indels: 10
0.71 0.07 0.22
Matches are distributed among these distances:
15 1 0.03
16 5 0.16
17 12 0.38
18 7 0.22
19 6 0.19
20 1 0.03
ACGTcount: A:0.39, C:0.26, G:0.11, T:0.25
Consensus pattern (17 bp):
CATAACACGCTAATGCT
Found at i:79819952 original size:16 final size:16
Alignment explanation
Indices: 79819899--79819952 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
79819889 ATAACACGCC
79819899 AATGCTCATAAGAGCT
1 AATGCTCATAAGAGCT
*
79819915 AAT-CTTATCATAACACGCT
1 AATGC---TCATAAGA-GCT
79819934 AATGCTCATAAGAGCT
1 AATGCTCATAAGAGCT
79819950 AAT
1 AAT
79819953 CTAACCGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 10
0.72 0.05 0.23
Matches are distributed among these distances:
15 1 0.03
16 9 0.29
17 7 0.23
18 7 0.23
19 6 0.19
20 1 0.03
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (16 bp):
AATGCTCATAAGAGCT
Found at i:79820058 original size:15 final size:16
Alignment explanation
Indices: 79820038--79820068 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
79820028 ATAAATATAT
79820038 ATCTCC-CTTCAATCC
1 ATCTCCACTTCAATCC
79820053 ATCTCCACTTCAATCC
1 ATCTCCACTTCAATCC
79820069 CTTACAACAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 6 0.40
16 9 0.60
ACGTcount: A:0.23, C:0.45, G:0.00, T:0.32
Consensus pattern (16 bp):
ATCTCCACTTCAATCC
Found at i:79825837 original size:78 final size:79
Alignment explanation
Indices: 79825729--79826041 Score: 307
Period size: 77 Copynumber: 3.9 Consensus size: 79
79825719 TGTTGACAAC
* * * *
79825729 AAAAATTGAATAAAT-TCTGTTGAACAACAGGAA-AAGAATCCTGAAACAGAATTATTCAATTGA
1 AAAAATTGAACAAATCT-TGTTAAACGACAGGAATAA-AATCCTGAAACAGAATTGTTCAATTGA
79825792 -TTTCTGTTTAAAACA
64 TTTTCTGTTTAAAACA
* * *
79825807 AAAAATTGAACAAATCTTGTTAAACGACAGGAATAAAATCTTGAAACAAAATTGTTCAATAGATT
1 AAAAATTGAACAAATCTTGTTAAACGACAGGAATAAAATCCTGAAACAGAATTGTTCAATTGATT
**
79825872 TTCCATTTAAAACA
66 TTCTGTTTAAAACA
* * *
79825886 AAAAA--GAACAAGTCTTGTTAAAC-AGCATGAATAAAATCCTAAAACAGAATTGTTCAA-TGAT
1 AAAAATTGAACAAATCTTGTTAAACGA-CAGGAATAAAATCCTGAAACAGAATTGTTCAATTGAT
* *
79825947 TTTTTGTTTGAAACGA
65 TTTCTGTTTAAAAC-A
** * * * *
79825963 AAAAAAAGAAAAAAACAAATCCTGTTAAACGACAGGAATAAAATCCTGAAATAGAATTGTTTAGT
1 AAAAATTG-----AACAAATCTTGTTAAACGACAGGAATAAAATCCTGAAACAGAATTGTTCAAT
*
79826028 TGATTTTTTGTTTA
61 TGATTTTCTGTTTA
79826042 CAAGCGGAAT
Statistics
Matches: 194, Mismatches: 27, Indels: 21
0.80 0.11 0.09
Matches are distributed among these distances:
76 14 0.07
77 51 0.26
78 51 0.26
79 22 0.11
84 42 0.22
85 14 0.07
ACGTcount: A:0.46, C:0.11, G:0.13, T:0.30
Consensus pattern (79 bp):
AAAAATTGAACAAATCTTGTTAAACGACAGGAATAAAATCCTGAAACAGAATTGTTCAATTGATT
TTCTGTTTAAAACA
Found at i:79831918 original size:30 final size:30
Alignment explanation
Indices: 79831882--79831940 Score: 118
Period size: 30 Copynumber: 2.0 Consensus size: 30
79831872 AAGATTGTGC
79831882 CATATAGCGAAATCTAGTATTTTATGATTT
1 CATATAGCGAAATCTAGTATTTTATGATTT
79831912 CATATAGCGAAATCTAGTATTTTATGATT
1 CATATAGCGAAATCTAGTATTTTATGATT
79831941 AAAATCATAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.34, C:0.10, G:0.14, T:0.42
Consensus pattern (30 bp):
CATATAGCGAAATCTAGTATTTTATGATTT
Found at i:79831962 original size:17 final size:17
Alignment explanation
Indices: 79831940--79832013 Score: 71
Period size: 17 Copynumber: 4.3 Consensus size: 17
79831930 ATTTTATGAT
79831940 TAAAATCATAAAAATTA
1 TAAAATCATAAAAATTA
*
79831957 TAAAATCATAAAAA-TG
1 TAAAATCATAAAAATTA
*
79831973 GAAAAT-ATATAAAATTA
1 TAAAATCATA-AAAATTA
* *
79831990 TTATAAATGAAAAAAATTA
1 -TA-AAATCATAAAAATTA
79832009 TAAAA
1 TAAAA
79832014 AATATAATTC
Statistics
Matches: 47, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
15 3 0.06
16 10 0.21
17 18 0.38
18 3 0.06
19 11 0.23
20 2 0.04
ACGTcount: A:0.65, C:0.03, G:0.04, T:0.28
Consensus pattern (17 bp):
TAAAATCATAAAAATTA
Found at i:79831977 original size:25 final size:27
Alignment explanation
Indices: 79831949--79832013 Score: 80
Period size: 26 Copynumber: 2.5 Consensus size: 27
79831939 TTAAAATCAT
*
79831949 AAAAATTATAAAATCA-TAAAAATGGA
1 AAAAATTATAAAATCATTAAAAATGAA
* * *
79831975 AAATA-TATAAAATTATTATAAATGAA
1 AAAAATTATAAAATCATTAAAAATGAA
79832001 AAAAATTATAAAA
1 AAAAATTATAAAA
79832014 AATATAATTC
Statistics
Matches: 32, Mismatches: 5, Indels: 3
0.80 0.12 0.08
Matches are distributed among these distances:
25 9 0.28
26 16 0.50
27 7 0.22
ACGTcount: A:0.66, C:0.02, G:0.05, T:0.28
Consensus pattern (27 bp):
AAAAATTATAAAATCATTAAAAATGAA
Found at i:79832097 original size:19 final size:20
Alignment explanation
Indices: 79832073--79832115 Score: 61
Period size: 19 Copynumber: 2.2 Consensus size: 20
79832063 CAAAATATAT
79832073 ATTATATAAATTAT-AAAAC
1 ATTATATAAATTATGAAAAC
* *
79832092 ATTATATAATTTATGAAAAT
1 ATTATATAAATTATGAAAAC
79832112 ATTA
1 ATTA
79832116 AAAGTGTAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 13 0.62
20 8 0.38
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.42
Consensus pattern (20 bp):
ATTATATAAATTATGAAAAC
Found at i:79832159 original size:28 final size:28
Alignment explanation
Indices: 79832094--79832170 Score: 79
Period size: 28 Copynumber: 2.8 Consensus size: 28
79832084 TATAAAACAT
*
79832094 TATATAATTTATG-AAAATA-TTAAAAG
1 TATAAAATTTATGAAAAATATTTAAAAG
* *
79832120 TGTAAAAGTTATGAAAAATATTTAAAA-
1 TATAAAATTTATGAAAAATATTTAAAAG
* *
79832147 TATAGAAATTTATTAACAATATTT
1 TATA-AAATTTATGAAAAATATTT
79832171 TTAAAAAATC
Statistics
Matches: 41, Mismatches: 7, Indels: 4
0.79 0.13 0.08
Matches are distributed among these distances:
26 10 0.24
27 9 0.22
28 22 0.54
ACGTcount: A:0.52, C:0.01, G:0.08, T:0.39
Consensus pattern (28 bp):
TATAAAATTTATGAAAAATATTTAAAAG
Found at i:79832459 original size:30 final size:31
Alignment explanation
Indices: 79832407--79832465 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
79832397 TTTTAAATTA
* *
79832407 AAAATGATAAAATTGTATTTTGA-CCTTTTT
1 AAAATGATAAAAATGTAATTTGATCCTTTTT
79832437 AAAATGATAAAAAAT-TAATTTGATCCTTT
1 AAAATGAT-AAAAATGTAATTTGATCCTTT
79832466 AAAACTTATA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
30 15 0.60
31 10 0.40
ACGTcount: A:0.42, C:0.07, G:0.08, T:0.42
Consensus pattern (31 bp):
AAAATGATAAAAATGTAATTTGATCCTTTTT
Found at i:79832893 original size:43 final size:44
Alignment explanation
Indices: 79832801--79832914 Score: 117
Period size: 43 Copynumber: 2.6 Consensus size: 44
79832791 TTTTGTACTA
*
79832801 TTTTATTTTTTAATAAAATTTTAAT-AATTTCTATATTTCTATATATT
1 TTTTA-TTTTTAAT--AATTTTAATAAATTTCAATATTTCTA-ATATT
* * *
79832848 TTTTA-TTTTAATAATTTTAATAAATTTCAAT-TTTTTTATTTT
1 TTTTATTTTTAATAATTTTAATAAATTTCAATATTTCTAATATT
* *
79832890 TTTTATTTTTAATAGTTTTTATAAA
1 TTTTATTTTTAATAATTTTAATAAA
79832915 ATATTTTTTT
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
42 9 0.15
43 30 0.51
44 8 0.14
45 7 0.12
47 5 0.08
ACGTcount: A:0.32, C:0.03, G:0.01, T:0.64
Consensus pattern (44 bp):
TTTTATTTTTAATAATTTTAATAAATTTCAATATTTCTAATATT
Found at i:79832923 original size:32 final size:32
Alignment explanation
Indices: 79832884--79832945 Score: 88
Period size: 32 Copynumber: 1.9 Consensus size: 32
79832874 TCAATTTTTT
* * * *
79832884 TATTTTTTTTATTTTTAATAGTTTTTATAAAA
1 TATTTTTTTCATTTATAATAATTTTAATAAAA
79832916 TATTTTTTTCATTTATAATAATTTTAATAA
1 TATTTTTTTCATTTATAATAATTTTAATAA
79832946 TTTTTTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
32 26 1.00
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (32 bp):
TATTTTTTTCATTTATAATAATTTTAATAAAA
Found at i:79832970 original size:17 final size:17
Alignment explanation
Indices: 79832948--79832999 Score: 68
Period size: 17 Copynumber: 2.9 Consensus size: 17
79832938 TTTAATAATT
**
79832948 TTTTATATTTTTTGCAC
1 TTTTATATTTTTTAAAC
79832965 TTTTATATTTTTTAAAC
1 TTTTATATTTTTTAAAC
79832982 TTTTAATGATTTTTTAAA
1 TTTT-AT-ATTTTTTAAA
79833000 AAGTTTTAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
17 19 0.61
18 2 0.06
19 10 0.32
ACGTcount: A:0.27, C:0.06, G:0.04, T:0.63
Consensus pattern (17 bp):
TTTTATATTTTTTAAAC
Found at i:79833040 original size:20 final size:20
Alignment explanation
Indices: 79833003--79833042 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
79832993 TTTTAAAAAG
**
79833003 TTTTAATGATTTCTTTATAA
1 TTTTAATGATTTAATTATAA
*
79833023 TTTTTATGATTTAATTATAA
1 TTTTAATGATTTAATTATAA
79833043 AATAGCAGTT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.33, C:0.03, G:0.05, T:0.60
Consensus pattern (20 bp):
TTTTAATGATTTAATTATAA
Found at i:79836048 original size:43 final size:43
Alignment explanation
Indices: 79835982--79836124 Score: 182
Period size: 43 Copynumber: 3.3 Consensus size: 43
79835972 AACGAACTCA
* * * *
79835982 CACACTTACTGCCGATTACTTAGCTGAAGCTATAATTGTATCG
1 CACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTATCG
*
79836025 CACACTTAGTGCCAATTAATTAGCCGAGGCTATAATTGTATCG
1 CACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTATCG
* *
79836068 CACATTTAGTGCCAATTAATTAGCCGCAA-CTATTTCATT-TATCG
1 CACACTTAGTGCCAATTAATTAGCCG-AAGCTA--TAATTGTATCG
79836112 CACACTTAGTGCC
1 CACACTTAGTGCC
79836125 TCAAATTCAA
Statistics
Matches: 88, Mismatches: 9, Indels: 5
0.86 0.09 0.05
Matches are distributed among these distances:
43 66 0.75
44 18 0.20
45 4 0.05
ACGTcount: A:0.29, C:0.24, G:0.15, T:0.32
Consensus pattern (43 bp):
CACACTTAGTGCCAATTAATTAGCCGAAGCTATAATTGTATCG
Found at i:79847024 original size:44 final size:43
Alignment explanation
Indices: 79846901--79847039 Score: 167
Period size: 42 Copynumber: 3.2 Consensus size: 43
79846891 GTCCTAGACG
* * * *
79846901 TGGTCTTACATGT-AATTCAGTATCGATGCCTTTGTCCCAGACA
1 TGGTCTTACACGTAAATTCA-AATCGATGCCTATGTCCCAAACA
*
79846944 GGGTCTTACACG-AAA-TCAAATACGATGCCTATGTCCCAAACA
1 TGGTCTTACACGTAAATTCAAAT-CGATGCCTATGTCCCAAACA
*
79846986 TGGTCTTACACGTAAATCTCAAATCGAGGCCTATGTCCCAAACA
1 TGGTCTTACACGTAAAT-TCAAATCGATGCCTATGTCCCAAACA
*
79847030 CGGTCTTACA
1 TGGTCTTACA
79847040 TGATATCTCA
Statistics
Matches: 83, Mismatches: 8, Indels: 9
0.83 0.08 0.09
Matches are distributed among these distances:
41 2 0.02
42 32 0.39
43 15 0.18
44 28 0.34
45 6 0.07
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.27
Consensus pattern (43 bp):
TGGTCTTACACGTAAATTCAAATCGATGCCTATGTCCCAAACA
Found at i:79849307 original size:38 final size:38
Alignment explanation
Indices: 79849255--79849330 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
79849245 AGAAAGGTGA
*
79849255 ATGTGGTCATAGATGCACTAAGCAGAAAATCCTTGTTT
1 ATGTGGTCACAGATGCACTAAGCAGAAAATCCTTGTTT
*
79849293 ATGTGGTCACAGATGCACTAAGCAGAAAATCTTTGTTT
1 ATGTGGTCACAGATGCACTAAGCAGAAAATCCTTGTTT
79849331 GCTTTGAGAG
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.32, C:0.16, G:0.21, T:0.32
Consensus pattern (38 bp):
ATGTGGTCACAGATGCACTAAGCAGAAAATCCTTGTTT
Found at i:79855101 original size:40 final size:40
Alignment explanation
Indices: 79855008--79855225 Score: 246
Period size: 40 Copynumber: 5.5 Consensus size: 40
79854998 AAGCCAAGTA
* * *
79855008 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTC-AATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * * * *
79855046 CCTTCAGGACATAGCCCGGATATAGTAACTCGCACCATTT
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79855086 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
79855126 CCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* ** * *
79855166 CTTTCGGGACTTAGTTCGGA-ACTAGTCACTAGCACAAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCAC-AAATG
79855207 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
79855226 TTATCATCCA
Statistics
Matches: 151, Mismatches: 24, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
38 11 0.07
39 17 0.11
40 102 0.68
41 21 0.14
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79857166 original size:39 final size:39
Alignment explanation
Indices: 79857121--79857241 Score: 206
Period size: 39 Copynumber: 3.1 Consensus size: 39
79857111 AAGCAAGACA
*
79857121 CTGGAAATGTATGCGGGCTAAAGACCCGCAGGCTTCGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
*
79857160 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCATG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
* *
79857199 CTGGAAATGTATCCGGGCTAAAGTCCCGCAGGCTTTGTG
1 CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
79857238 CTGG
1 CTGG
79857242 TAACATAATT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.22, C:0.24, G:0.31, T:0.22
Consensus pattern (39 bp):
CTGGAAATGTATCCGGGCTAAAGACCCGCAGGCTTCGTG
Found at i:79861874 original size:39 final size:39
Alignment explanation
Indices: 79861846--79862808 Score: 1586
Period size: 39 Copynumber: 24.7 Consensus size: 39
79861836 ACACGTGGCT
*
79861846 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
*
79861885 TGCGGACCTCATGTCCGGATATA-TTCCTAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCC-AGCATATAGCC
*
79861924 TGCAGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79861963 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862002 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862041 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862080 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862119 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862158 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862197 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862236 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862275 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862314 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862353 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862392 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862431 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862470 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862509 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862548 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862587 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862626 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862665 TGCGGACCTCATGTCTGGATATATTCCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862704 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79862743 TGCGGACCTCATGTCCGGATATATTCCCAACATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79862782 TGCGGACTTCATGTCCGGATATATTTC
1 TGCGGACTTCATGTCCGGATATATTTC
79862809 AAATACCATG
Statistics
Matches: 852, Mismatches: 70, Indels: 4
0.92 0.08 0.00
Matches are distributed among these distances:
38 4 0.00
39 844 0.99
40 4 0.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (39 bp):
TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:79861983 original size:78 final size:78
Alignment explanation
Indices: 79861846--79862808 Score: 1872
Period size: 78 Copynumber: 12.3 Consensus size: 78
79861836 ACACGTGGCT
* *
79861846 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
*
79861911 CTAGCATATAGCC
66 CCAGCATATAGCC
*
79861924 TGCAGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79861989 CCAGCATATAGCC
66 CCAGCATATAGCC
79862002 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862067 CCAGCATATAGCC
66 CCAGCATATAGCC
79862080 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862145 CCAGCATATAGCC
66 CCAGCATATAGCC
79862158 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862223 CCAGCATATAGCC
66 CCAGCATATAGCC
79862236 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862301 CCAGCATATAGCC
66 CCAGCATATAGCC
79862314 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862379 CCAGCATATAGCC
66 CCAGCATATAGCC
79862392 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862457 CCAGCATATAGCC
66 CCAGCATATAGCC
79862470 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862535 CCAGCATATAGCC
66 CCAGCATATAGCC
79862548 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862613 CCAGCATATAGCC
66 CCAGCATATAGCC
79862626 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
79862691 CCAGCATATAGCC
66 CCAGCATATAGCC
*
79862704 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
*
79862769 CCAACATATAGCC
66 CCAGCATATAGCC
79862782 TGCGGACTTCATGTCCGGATATATTTC
1 TGCGGACTTCATGTCCGGATATATTTC
79862809 AAATACCATG
Statistics
Matches: 878, Mismatches: 7, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
78 878 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.29
Consensus pattern (78 bp):
TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCTGGATATATTC
CCAGCATATAGCC
Found at i:79865058 original size:47 final size:47
Alignment explanation
Indices: 79864983--79865108 Score: 173
Period size: 47 Copynumber: 2.7 Consensus size: 47
79864973 TTCGGGACTT
* * * * *
79864983 ATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGG-CTC
1 ATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTC
* *
79865029 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTC
1 -ATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTC
79865077 ATCACATATATACACTTTCACATTCATCACAT
1 ATCACATATATACACTTTCACATTCATCACAT
79865109 ACACTTTCAC
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
47 67 0.96
48 3 0.04
ACGTcount: A:0.29, C:0.32, G:0.08, T:0.32
Consensus pattern (47 bp):
ATCACATATATACACTTTCACATTCATCACATCGGCCACTAGGCCTC
Found at i:79865109 original size:25 final size:23
Alignment explanation
Indices: 79865075--79865129 Score: 78
Period size: 21 Copynumber: 2.4 Consensus size: 23
79865065 CCATTAGGCC
79865075 TCATCACATATATACACTTTCACAT
1 TCATCAC--ATATACACTTTCACAT
79865100 TCATCAC--ATACACTTTCACAT
1 TCATCACATATACACTTTCACAT
79865121 TCATCACAT
1 TCATCACAT
79865130 CGGCTATTAG
Statistics
Matches: 28, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
21 21 0.75
25 7 0.25
ACGTcount: A:0.35, C:0.31, G:0.00, T:0.35
Consensus pattern (23 bp):
TCATCACATATACACTTTCACAT
Found at i:79865112 original size:21 final size:21
Alignment explanation
Indices: 79865086--79865129 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
79865076 CATCACATAT
79865086 ATACACTTTCACATTCATCAC
1 ATACACTTTCACATTCATCAC
79865107 ATACACTTTCACATTCATCAC
1 ATACACTTTCACATTCATCAC
79865128 AT
1 AT
79865130 CGGCTATTAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.34, C:0.32, G:0.00, T:0.34
Consensus pattern (21 bp):
ATACACTTTCACATTCATCAC
Found at i:79865120 original size:68 final size:68
Alignment explanation
Indices: 79865039--79865176 Score: 258
Period size: 68 Copynumber: 2.0 Consensus size: 68
79865029 TGTCACATAT
79865039 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCAT
79865104 CAC
66 CAC
* *
79865107 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCAT
79865172 CAC
66 CAC
79865175 AT
1 AT
79865177 CGGCCATTAG
Statistics
Matches: 68, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.31, C:0.30, G:0.06, T:0.33
Consensus pattern (68 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCAT
CAC
Found at i:79865162 original size:47 final size:47
Alignment explanation
Indices: 79865107--79865214 Score: 189
Period size: 47 Copynumber: 2.3 Consensus size: 47
79865097 CATTCATCAC
*
79865107 ATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
79865154 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
* *
79865201 ATATACATTCACAT
1 ATACACTTTCACAT
79865215 CACAATTATC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 58 1.00
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATAT
Found at i:79874931 original size:39 final size:39
Alignment explanation
Indices: 79874903--79875163 Score: 427
Period size: 39 Copynumber: 6.7 Consensus size: 39
79874893 ACACGTGGCT
*
79874903 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
*
79874942 TGCGGACCTCATGTCCGGATATA-TTCCTAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCC-AGCATATAGCC
*
79874981 TGCAGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
*
79875020 TGCGGACCTCATGTCCGGATATA-TTCCTAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCC-AGCATATAGCC
79875059 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
* * *
79875098 TGCGGACCTCATGTCCGGATATATTCCCAACATATAGCC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
79875137 TGCGGACTTCATGTCCGGATATATTTC
1 TGCGGACTTCATGTCCGGATATATTTC
79875164 AAATACCATG
Statistics
Matches: 206, Mismatches: 12, Indels: 8
0.91 0.05 0.04
Matches are distributed among these distances:
38 8 0.04
39 190 0.92
40 8 0.04
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (39 bp):
TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCC
Found at i:79875036 original size:78 final size:78
Alignment explanation
Indices: 79874903--79875163 Score: 486
Period size: 78 Copynumber: 3.3 Consensus size: 78
79874893 ACACGTGGCT
*
79874903 TGCGGACTTCAAGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
79874968 CTAGCATATAGCC
66 CTAGCATATAGCC
*
79874981 TGCAGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
79875046 CTAGCATATAGCC
66 CTAGCATATAGCC
79875059 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
1 TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
* *
79875124 CCAACATATAGCC
66 CTAGCATATAGCC
79875137 TGCGGACTTCATGTCCGGATATATTTC
1 TGCGGACTTCATGTCCGGATATATTTC
79875164 AAATACCATG
Statistics
Matches: 178, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
78 178 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.30
Consensus pattern (78 bp):
TGCGGACTTCATGTCCGGATATATTTCCAGCATATAGCCTGCGGACCTCATGTCCGGATATATTC
CTAGCATATAGCC
Found at i:79879054 original size:46 final size:47
Alignment explanation
Indices: 79878926--79879140 Score: 185
Period size: 46 Copynumber: 4.6 Consensus size: 47
79878916 TGCCTATTCC
* * * * *
79878926 ATGTCCTAGACACGGTCTTATACTGG-TT-CGTATCTCAA-GTCGATGCC
1 ATGTCCCAGACATGGTCTTACACTGGCTTAC--ATCTCAAGGCCGATG-T
* * *
79878973 ATGTCCCAGACATGGTCTTACATTGAC-TATCATCTCGTA-GCCGATGT
1 ATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTC-AAGGCCGATGT
* * *
79879020 ATGTCCTAGACAT-GTCTTACACTGGCTTACATCTCAAGGCTGATGC
1 ATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGGCCGATGT
* * *
79879066 ATGTCCCAGACAT-GTCTTACACTAGCCCT-CATCTCAATGCCGATGCT
1 ATGTCCCAGACATGGTCTTACACT-GGCTTACATCTCAAGGCCGATG-T
79879113 ATGTCCCAGACATGGTCTTACACTGGCT
1 ATGTCCCAGACATGGTCTTACACTGGCT
79879141 CTCATAATGT
Statistics
Matches: 137, Mismatches: 22, Indels: 18
0.77 0.12 0.10
Matches are distributed among these distances:
45 1 0.01
46 59 0.43
47 59 0.43
48 17 0.12
49 1 0.01
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.30
Consensus pattern (47 bp):
ATGTCCCAGACATGGTCTTACACTGGCTTACATCTCAAGGCCGATGT
Found at i:79879173 original size:94 final size:92
Alignment explanation
Indices: 79879012--79879185 Score: 235
Period size: 94 Copynumber: 1.9 Consensus size: 92
79879002 TCATCTCGTA
* * * *
79879012 GCCGATGTATGTCCTAGACATGTCTTACACTGGCTTACATCTCAAGGCTGATGCATGTCCCAGAC
1 GCCGATGTATGTCCCAGACATGTCTTACACTGGCTTACATATCAAGGCCGATGCATGTCCCAAAC
79879077 ATGTCTTACACTAGCCCTCATCTCAAT
66 ATGTCTTACACTAGCCCTCATCTCAAT
**
79879104 GCCGATGCTATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCCGATGCATGTCCC
1 GCCGATG-TATGTCCCAGACAT-GTCTTACACTGGCT-TACAT-ATCAAGGCCGATGCATGTCCC
*
79879167 AAACATGTCTTATACTAGC
62 AAACATGTCTTACACTAGC
79879186 TCACACACGA
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
92 7 0.10
93 13 0.18
94 49 0.69
95 2 0.03
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.29
Consensus pattern (92 bp):
GCCGATGTATGTCCCAGACATGTCTTACACTGGCTTACATATCAAGGCCGATGCATGTCCCAAAC
ATGTCTTACACTAGCCCTCATCTCAAT
Found at i:79879467 original size:27 final size:27
Alignment explanation
Indices: 79879423--79879479 Score: 71
Period size: 27 Copynumber: 2.1 Consensus size: 27
79879413 AAATCCGTTG
* *
79879423 ATGAATTGAATTGAAAATTATTGTTAC
1 ATGAATTGAATTGAAAATTACTATTAC
*
79879450 ATGAATTGAA-TGTTAAATTACTATTAC
1 ATGAATTGAATTG-AAAATTACTATTAC
79879477 ATG
1 ATG
79879480 GGTTGTATGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
26 2 0.08
27 24 0.92
ACGTcount: A:0.40, C:0.05, G:0.14, T:0.40
Consensus pattern (27 bp):
ATGAATTGAATTGAAAATTACTATTAC
Found at i:79879815 original size:49 final size:50
Alignment explanation
Indices: 79879728--79879858 Score: 158
Period size: 49 Copynumber: 2.6 Consensus size: 50
79879718 TATACTGAGG
* * *
79879728 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTGG
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTGA
* * *
79879777 TCGCATGTGTAGTACTAAGTGCAGGCTATTA-TTCGTACCCGATAACTTTGA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGT-GTACCCGATAAC-TTGA
**
79879828 TCATGTGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
79879859 TGCGTGCCAG
Statistics
Matches: 69, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
48 1 0.01
49 38 0.55
51 30 0.43
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (50 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCCGATAACTTGA
Done.