Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 234 of 297
Found at i:79879853 original size:51 final size:50
Alignment explanation
Indices: 79879728--79879873 Score: 170
Period size: 51 Copynumber: 2.9 Consensus size: 50
79879718 TATACTGAGG
* * *
79879728 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGT-GTACCGGATAA-TTGG
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTA-TTCGTACCAGATAACTTGA
* * * *
79879777 TCGCATGTGTAGTACTAAGTGCAGGCTATTATTCGTACCCGATAACTTTGA
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATTCGTACCAGATAAC-TTGA
* * *
79879828 TCATGTGTGTAGTACTAAGTGCAGGCTACTATGCGTGCCAGATAAC
1 TCACGTGTGTAGTACTAAGTGCAGGCTACTATTCGTACCAGATAAC
79879874 CTTGTCTACA
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
48 1 0.01
49 38 0.47
51 42 0.52
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.30
Consensus pattern (50 bp):
TCACGTGTGTAGTACTAAGTGCAGGCTACTATTCGTACCAGATAACTTGA
Found at i:79884189 original size:52 final size:52
Alignment explanation
Indices: 79884129--79884228 Score: 191
Period size: 52 Copynumber: 1.9 Consensus size: 52
79884119 AATAATTTTG
79884129 TGAAAATTTCGTTCGAAAATTTTGACATCCGGGCACTTAATTTAGTCAATCA
1 TGAAAATTTCGTTCGAAAATTTTGACATCCGGGCACTTAATTTAGTCAATCA
*
79884181 TGAAAATTTCGTTCGAAAATTTTGACATTCGGGCACTTAATTTAGTCA
1 TGAAAATTTCGTTCGAAAATTTTGACATCCGGGCACTTAATTTAGTCA
79884229 TAAGGACTAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 47 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.36
Consensus pattern (52 bp):
TGAAAATTTCGTTCGAAAATTTTGACATCCGGGCACTTAATTTAGTCAATCA
Found at i:79884907 original size:30 final size:30
Alignment explanation
Indices: 79884872--79884928 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
79884862 TTTACTAGCC
79884872 TAGGGGCAAAAATGTAATTTTGACAAAGTT
1 TAGGGGCAAAAATGTAATTTTGACAAAGTT
* *
79884902 TAGGGGCAAAATTGTAATTTTTACAAA
1 TAGGGGCAAAAATGTAATTTTGACAAA
79884929 ATATGATTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.40, C:0.07, G:0.21, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTGACAAAGTT
Found at i:79885267 original size:27 final size:27
Alignment explanation
Indices: 79885226--79885279 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
79885216 TGTCATGTGA
* *
79885226 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
79885253 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
79885280 GGTTGTATAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:79890732 original size:30 final size:30
Alignment explanation
Indices: 79890697--79890753 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
79890687 TTTACGAGCC
*
79890697 TAGGGGTAAAAATGTAATTTTGACAAAGTT
1 TAGGGGCAAAAATGTAATTTTGACAAAGTT
* *
79890727 TAGGGGCAAAATTGTAATTTTTACAAA
1 TAGGGGCAAAAATGTAATTTTGACAAA
79890754 ATATGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.05, G:0.21, T:0.33
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTGACAAAGTT
Found at i:79891092 original size:27 final size:27
Alignment explanation
Indices: 79891051--79891104 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
79891041 TGTCATGTGA
* *
79891051 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
79891078 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
79891105 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:79896935 original size:18 final size:18
Alignment explanation
Indices: 79896912--79896972 Score: 70
Period size: 18 Copynumber: 3.4 Consensus size: 18
79896902 GAGGCGCAGA
79896912 TGAGGAAGAAGATGTAGG
1 TGAGGAAGAAGATGTAGG
*
79896930 TGAGGAAGAAGATGTCGAG
1 TGAGGAAGAAGATGTAG-G
* * *
79896949 -GAGGAAAAAGATGCATG
1 TGAGGAAGAAGATGTAGG
79896966 TGAGGAA
1 TGAGGAA
79896973 AAAGGGGTAG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 1 0.03
18 34 0.94
19 1 0.03
ACGTcount: A:0.41, C:0.03, G:0.41, T:0.15
Consensus pattern (18 bp):
TGAGGAAGAAGATGTAGG
Found at i:79896973 original size:18 final size:17
Alignment explanation
Indices: 79896907--79896976 Score: 61
Period size: 18 Copynumber: 3.9 Consensus size: 17
79896897 CAATAGAGGC
*
79896907 GCAGATGAGGAAGAAGAT
1 GCAG-TGAGGAAAAAGAT
* *
79896925 GTAGGTGAGGAAGAAGAT
1 GCA-GTGAGGAAAAAGAT
79896943 GTCGAG-GAGGAAAAAGAT
1 G-C-AGTGAGGAAAAAGAT
79896961 GCATGTGAGGAAAAAG
1 GCA-GTGAGGAAAAAG
79896977 GGGTAGCAGA
Statistics
Matches: 44, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
16 1 0.02
17 2 0.05
18 38 0.86
19 2 0.05
20 1 0.02
ACGTcount: A:0.43, C:0.04, G:0.40, T:0.13
Consensus pattern (17 bp):
GCAGTGAGGAAAAAGAT
Found at i:79905378 original size:29 final size:29
Alignment explanation
Indices: 79905341--79905437 Score: 135
Period size: 29 Copynumber: 3.4 Consensus size: 29
79905331 GTGACTAGGT
*
79905341 CTAACGGGCCATATAAATGTGATTTGGGC
1 CTAATGGGCCATATAAATGTGATTTGGGC
79905370 CTAATGGGCCATATACAA-GTGATTTGGGC
1 CTAATGGGCCATATA-AATGTGATTTGGGC
* *
79905399 CTAATGGGCCATATGAATATGA-TTGGGC
1 CTAATGGGCCATATAAATGTGATTTGGGC
*
79905427 TTAATGGGCCA
1 CTAATGGGCCA
79905438 GATACAGGTA
Statistics
Matches: 62, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
28 18 0.29
29 42 0.68
30 2 0.03
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (29 bp):
CTAATGGGCCATATAAATGTGATTTGGGC
Found at i:79906543 original size:17 final size:18
Alignment explanation
Indices: 79906510--79906544 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
79906500 GTTTAAGAAG
79906510 GGTTTTCAATGAAAACAC
1 GGTTTTCAATGAAAACAC
*
79906528 GGTTTTCACT-AAAACAC
1 GGTTTTCAATGAAAACAC
79906545 TTCAATGTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 7 0.44
18 9 0.56
ACGTcount: A:0.37, C:0.20, G:0.14, T:0.29
Consensus pattern (18 bp):
GGTTTTCAATGAAAACAC
Found at i:79914714 original size:46 final size:45
Alignment explanation
Indices: 79914626--79914787 Score: 186
Period size: 46 Copynumber: 3.5 Consensus size: 45
79914616 TTATGAGAGC
* * *
79914626 CAGTGTAAGACCATGTCTAGGACATGGCATCGGCATTGAGACGAGT
1 CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCCTCGAGACGAGT
79914672 GCTAGTGTAAGA-CATGTCTGGGACATGCATCGGCCTCGAGACGTAAGT
1 -C-AGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACG--AGT
* * * *
79914720 CAATGTAAGA-CATGTCTGGGACATGTATCGG-CTACGAGATGTGT
1 CAGTGTAAGACCATGTCTGGGACATGCATCGGCCT-CGAGACGAGT
79914764 CAGTGTAAGACCATGTCTGGGACA
1 CAGTGTAAGACCATGTCTGGGACA
79914788 CGGAATCGGC
Statistics
Matches: 102, Mismatches: 8, Indels: 12
0.84 0.07 0.10
Matches are distributed among these distances:
44 11 0.11
45 15 0.15
46 49 0.48
47 15 0.15
48 12 0.12
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.23
Consensus pattern (45 bp):
CAGTGTAAGACCATGTCTGGGACATGCATCGGCCTCGAGACGAGT
Found at i:79916041 original size:21 final size:22
Alignment explanation
Indices: 79916002--79916042 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
79915992 TCGAATTGGT
79916002 CACACGGGCATGTTGCCCCTCC
1 CACACGGGCATGTTGCCCCTCC
79916024 CACACGGGCATG-TGCCCCT
1 CACACGGGCATGTTGCCCCT
79916043 GTATCTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
21 7 0.37
22 12 0.63
ACGTcount: A:0.15, C:0.44, G:0.24, T:0.17
Consensus pattern (22 bp):
CACACGGGCATGTTGCCCCTCC
Found at i:79921403 original size:21 final size:21
Alignment explanation
Indices: 79921363--79921403 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
79921353 ACATTTTTTA
*
79921363 TTAACTAATAAAACACATATT
1 TTAACTAAGAAAACACATATT
79921384 TTAACATAAGAAAACA-ATAT
1 TTAAC-TAAGAAAACACATAT
79921404 CCATTGTACC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 9 0.50
22 9 0.50
ACGTcount: A:0.56, C:0.12, G:0.02, T:0.29
Consensus pattern (21 bp):
TTAACTAAGAAAACACATATT
Found at i:79928161 original size:21 final size:21
Alignment explanation
Indices: 79928137--79928206 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
79928127 CACATACATC
79928137 ATGAACTCAGACCACAACACA
1 ATGAACTCAGACCACAACACA
* * *
79928158 ATGAGCTCAGATGTCACATATATC-
1 ATGAACTCAGA--CCACA-ACA-CA
*
79928182 ATGAACTCAGACCACAACGCA
1 ATGAACTCAGACCACAACACA
79928203 ATGA
1 ATGA
79928207 GTTCAAGTCA
Statistics
Matches: 37, Mismatches: 7, Indels: 10
0.69 0.13 0.19
Matches are distributed among these distances:
20 1 0.03
21 15 0.41
22 4 0.11
23 4 0.11
24 12 0.32
25 1 0.03
ACGTcount: A:0.41, C:0.27, G:0.14, T:0.17
Consensus pattern (21 bp):
ATGAACTCAGACCACAACACA
Found at i:79928188 original size:45 final size:44
Alignment explanation
Indices: 79928124--79928221 Score: 153
Period size: 45 Copynumber: 2.2 Consensus size: 44
79928114 CCAAAATATG
*
79928124 TGTCACATACATCATGAACTCAGACCACAACACAATGAGCTCAGA
1 TGTCACATATATCATGAACTCAGACCACAACACAATGAGCTCA-A
* *
79928169 TGTCACATATATCATGAACTCAGACCACAACGCAATGAGTTCAA
1 TGTCACATATATCATGAACTCAGACCACAACACAATGAGCTCAA
79928213 -GTCACATAT
1 TGTCACATAT
79928222 TTCCTATTTA
Statistics
Matches: 50, Mismatches: 3, Indels: 2
0.91 0.05 0.04
Matches are distributed among these distances:
43 9 0.18
44 1 0.02
45 40 0.80
ACGTcount: A:0.39, C:0.27, G:0.13, T:0.21
Consensus pattern (44 bp):
TGTCACATATATCATGAACTCAGACCACAACACAATGAGCTCAA
Found at i:79933056 original size:193 final size:192
Alignment explanation
Indices: 79932820--79933202 Score: 678
Period size: 193 Copynumber: 2.0 Consensus size: 192
79932810 AGTCACACGA
79932820 CCGTGTGCTTAAGCCATGTGGGCGATTTAATTTTTGAAGATTTTCATAAAATAGGTGTGGACTTC
1 CCGTGTGCTTAAGCCATGTGGGCGATTTAATTTTTGAAGATTTTCATAAAATAGGTGTGGACTTC
79932885 ACATGCCCTGGGCTCACGCCCGTGCCTGAGGCTGTGAAGTCCACATGGCTGAGACACACGGCCGT
66 ACATGCCCTGGGCTCACGCCCGTGCCTGAGGCTGTGAAGTCCACATGGCTGAGACACACGGCCGT
79932950 GTCTTTACCTGTGTGGCCAAAAATAAAGCTATTTACCAAGTCATTTTCCACCTTTACTTGGG
131 GTCTTTACCTGTGTGGCCAAAAATAAAGCTATTTACCAAGTCATTTTCCACCTTTACTTGGG
* *
79933012 CCGTGTGACTT-AGCCCATGTTGGCGATTTAATTTTTGAAGATTTTCATAAAATAGGTTTGGACT
1 CCGTGTG-CTTAAG-CCATGTGGGCGATTTAATTTTTGAAGATTTTCATAAAATAGGTGTGGACT
* * *
79933076 TCAGATGCCCTGGGCTCACGCCCGTGTCTGAGGCTGTGAAGTCCACATGGCTGAGACACATGGCC
64 TCACATGCCCTGGGCTCACGCCCGTGCCTGAGGCTGTGAAGTCCACATGGCTGAGACACACGGCC
* *
79933141 GTGTCTTTACCTGTGTGGCCAAAAATAAAGCTATTTACCCAGTCATTTTCCAGCTTTACTTG
129 GTGTCTTTACCTGTGTGGCCAAAAATAAAGCTATTTACCAAGTCATTTTCCACCTTTACTTG
79933203 TGCCAACTTG
Statistics
Matches: 182, Mismatches: 7, Indels: 3
0.95 0.04 0.02
Matches are distributed among these distances:
192 9 0.05
193 173 0.95
ACGTcount: A:0.23, C:0.23, G:0.23, T:0.31
Consensus pattern (192 bp):
CCGTGTGCTTAAGCCATGTGGGCGATTTAATTTTTGAAGATTTTCATAAAATAGGTGTGGACTTC
ACATGCCCTGGGCTCACGCCCGTGCCTGAGGCTGTGAAGTCCACATGGCTGAGACACACGGCCGT
GTCTTTACCTGTGTGGCCAAAAATAAAGCTATTTACCAAGTCATTTTCCACCTTTACTTGGG
Found at i:79942391 original size:40 final size:40
Alignment explanation
Indices: 79942314--79942566 Score: 376
Period size: 40 Copynumber: 6.5 Consensus size: 40
79942304 AAACCAAGTA
** *
79942314 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
79942353 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79942393 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79942433 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * *
79942473 CCTTCGGG----GGCCCGGTTATAGTATCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79942509 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79942549 CCTTCGGG-CTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
79942567 TTATCAATCC
Statistics
Matches: 196, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
36 33 0.17
39 23 0.12
40 140 0.71
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:79942521 original size:116 final size:116
Alignment explanation
Indices: 79942314--79942566 Score: 386
Period size: 116 Copynumber: 2.2 Consensus size: 116
79942304 AAACCAAGTA
* *
79942314 CCTTCGGGGTTTAG-CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAG
1 CCTTC-GGGCTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGG---TAGCCCGGTTATAG
*
79942378 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
62 TAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
79942433 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-GGCCCGGTTATAGTA
1 CCTTCGGG-CTTAGCCCGGATATAGCT-ACTCGCACAAATGCCTTCGGGTAGCCCGGTTATAGTA
*
79942496 TCTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
64 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
79942549 CCTTCGGGCTTAGCCCGG
1 CCTTCGGGCTTAGCCCGG
79942567 TTATCAATCC
Statistics
Matches: 126, Mismatches: 5, Indels: 10
0.89 0.04 0.07
Matches are distributed among these distances:
115 10 0.08
116 73 0.58
118 3 0.02
119 10 0.08
120 30 0.24
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (116 bp):
CCTTCGGGCTTAGCCCGGATATAGCTACTCGCACAAATGCCTTCGGGTAGCCCGGTTATAGTAAC
TCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:79942531 original size:76 final size:76
Alignment explanation
Indices: 79942328--79942566 Score: 354
Period size: 76 Copynumber: 3.1 Consensus size: 76
79942318 CGGGGTTTAG
* *
79942328 CCGGATATAGCTACTCGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCGGATATAG-TACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79942393 CCTTCGGGACTTAGC
65 CCTTCGGG---TAGC
79942408 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCGGATATAGT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
79942473 CCTTCGGG-GGC
65 CCTTCGGGTAGC
* *
79942484 CCGGTTATAGTATCTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
1 CCGGATATAGTA-CTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
79942549 CCTTCGGGCTTAGC
65 CCTTCGGG--TAGC
79942563 CCGG
1 CCGG
79942567 TTATCAATCC
Statistics
Matches: 148, Mismatches: 6, Indels: 11
0.90 0.04 0.07
Matches are distributed among these distances:
75 1 0.01
76 71 0.48
79 7 0.05
80 69 0.47
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (76 bp):
CCGGATATAGTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
CTTCGGGTAGC
Found at i:79944879 original size:23 final size:26
Alignment explanation
Indices: 79944826--79944919 Score: 97
Period size: 23 Copynumber: 3.6 Consensus size: 26
79944816 AAGTACCTTT
79944826 GATTTATAGAATTACCTGTTTTACCCTC
1 GATTTATAGAATTACCTG--TTACCCTC
79944854 GATTTATAGAATTACC-G-T-CCCTC
1 GATTTATAGAATTACCTGTTACCCTC
*
79944877 GATTTATAGAATTA-CTGTTTTACCCTT
1 GATTTATAGAATTACCTG--TTACCCTC
* *
79944904 GATTTACAAAATTACC
1 GATTTATAGAATTACC
79944920 AAAATACCCT
Statistics
Matches: 57, Mismatches: 3, Indels: 12
0.79 0.04 0.17
Matches are distributed among these distances:
22 1 0.02
23 20 0.35
24 1 0.02
26 1 0.02
27 17 0.30
28 17 0.30
ACGTcount: A:0.29, C:0.20, G:0.11, T:0.40
Consensus pattern (26 bp):
GATTTATAGAATTACCTGTTACCCTC
Found at i:79944927 original size:27 final size:27
Alignment explanation
Indices: 79944897--79945230 Score: 212
Period size: 27 Copynumber: 12.3 Consensus size: 27
79944887 ATTACTGTTT
*
79944897 TACCCTTGATTTACAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
79944924 TACCCTCGA-TCAGTAAAATTACCAAAA
1 TACCCTTGATTTA-TAAAATTACCAAAA
* * * *
79944951 TACCCTAG-TTTGTAAAATTGCTAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* **
79944977 TACCCTTGGTTTATAAAATTACTGAAA
1 TACCCTTGATTTATAAAATTACCAAAA
** *
79945004 TACCCTCAATTTGTAAAATTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
* *
79945031 TACCCCT-AGTTTGTAAAATTACCAAAA
1 TACCCTTGA-TTTATAAAATTACCAAAA
* * * *
79945058 TACCACTAG-TTTGTCAAATTACCGAAA
1 TACC-CTTGATTTATAAAATTACCAAAA
* *
79945085 TA-CCTTCAATTTGTAAAATTACCAAAA
1 TACCCTT-GATTTATAAAATTACCAAAA
* * *
79945112 TACCCCTGATTTACAAAGTTA-CAGAAA
1 TACCCTTGATTTATAAAATTACCA-AAA
* ***
79945139 TACCCTTGACTTTCTAAAAATTATGGAAA
1 TACCCTTGA-TTTAT-AAAATTACCAAAA
* * * **
79945168 TACCATTGGTTTAACAAAATTACTGAAA
1 TACCCTTGATTT-ATAAAATTACCAAAA
* * * *
79945196 TACCCTTGGTTTGTAGATTTACCAAAA
1 TACCCTTGATTTATAAAATTACCAAAA
*
79945223 CACCCTTG
1 TACCCTTG
79945231 TAGGATGAAA
Statistics
Matches: 240, Mismatches: 53, Indels: 28
0.75 0.17 0.09
Matches are distributed among these distances:
25 2 0.01
26 25 0.10
27 165 0.69
28 32 0.13
29 16 0.07
ACGTcount: A:0.40, C:0.20, G:0.09, T:0.31
Consensus pattern (27 bp):
TACCCTTGATTTATAAAATTACCAAAA
Found at i:79945078 original size:81 final size:81
Alignment explanation
Indices: 79944897--79945118 Score: 297
Period size: 81 Copynumber: 2.8 Consensus size: 81
79944887 ATTACTGTTT
* * * **
79944897 TACCCTT-GATTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAAAATA-CCCTAGT
1 TACCCTTAG-TTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGT
* *
79944960 TTGTAAAATTGCTAAAA
65 TTGTAAAATTACCAAAA
* *
79944977 TACCCTTGGTTTATAAAATTACTGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTT
1 TACCCTTAGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTT
79945042 TGTAAAATTACCAAAA
66 TGTAAAATTACCAAAA
* * *
79945058 TACCAC-TAGTTTGTCAAATTACCGAAATACCTTCAATTTGTAAAATTACCAAAATACCCCT
1 TACC-CTTAGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCT
79945119 GATTTACAAA
Statistics
Matches: 126, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
80 48 0.38
81 77 0.61
82 1 0.01
ACGTcount: A:0.41, C:0.22, G:0.07, T:0.31
Consensus pattern (81 bp):
TACCCTTAGTTTATAAAATTACCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAGTT
TGTAAAATTACCAAAA
Found at i:79945321 original size:27 final size:27
Alignment explanation
Indices: 79945260--79945347 Score: 106
Period size: 27 Copynumber: 3.3 Consensus size: 27
79945250 TACCCCTATT
*
79945260 AGGTAAAAAGACCGTAAAGCCCCTGTA
1 AGGTAAAGAGACCGTAAAGCCCCTGTA
*
79945287 GGGTAAAGAGACCGTAAAGCCCCTGTA
1 AGGTAAAGAGACCGTAAAGCCCCTGTA
* * *
79945314 AGGTAAAGTGACTGTAATA-CCACTGTA
1 AGGTAAAGAGACCGTAA-AGCCCCTGTA
*
79945341 TGGTAAA
1 AGGTAAA
79945348 ATGACGAATG
Statistics
Matches: 53, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
27 52 0.98
28 1 0.02
ACGTcount: A:0.38, C:0.18, G:0.25, T:0.19
Consensus pattern (27 bp):
AGGTAAAGAGACCGTAAAGCCCCTGTA
Found at i:79946169 original size:26 final size:26
Alignment explanation
Indices: 79946140--79946327 Score: 231
Period size: 26 Copynumber: 7.3 Consensus size: 26
79946130 GAGGAAGTGC
*
79946140 AAAAAGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
79946166 AAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
79946192 AAAAGGGCTTATGCCCAAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
***
79946218 AAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCCCAGTTTATTG
* *
79946244 AAAAGAGCTTATGCCTCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
**
79946270 AAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
79946295 AAAAGGGCTT-TGCCCCA-ATTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
79946318 AAAAGAGGCT
1 AAAAG-GGCT
79946328 AGGCCTCCAG
Statistics
Matches: 139, Mismatches: 22, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
23 5 0.04
24 7 0.05
25 29 0.21
26 98 0.71
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.27
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:79946218 original size:52 final size:51
Alignment explanation
Indices: 79946140--79946309 Score: 272
Period size: 52 Copynumber: 3.3 Consensus size: 51
79946130 GAGGAAGTGC
*
79946140 AAAAAGGCTTATGCCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
1 AAAAGGGCTTATG-CCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
79946192 AAAAGGGCTTATGCCCAAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCA
1 AAAAGGGCTTATGCCC-AGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
*
79946244 AAAAGAGCTTATGCCTCAGTTTATTGAAAAGGGCTT-TGCCCCAGTTTACCG
1 AAAAGGGCTTATGCC-CAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
79946295 AAAAGGGCTT-TGCCC
1 AAAAGGGCTTATGCCC
79946310 CAATTATTAA
Statistics
Matches: 111, Mismatches: 5, Indels: 7
0.90 0.04 0.06
Matches are distributed among these distances:
49 1 0.01
50 4 0.04
51 26 0.23
52 79 0.71
53 1 0.01
ACGTcount: A:0.29, C:0.22, G:0.22, T:0.27
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCAGTTTATTGAAAAGGGCTTATGCCCCAGTTTACCG
Found at i:79946609 original size:32 final size:31
Alignment explanation
Indices: 79946533--79946611 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
79946523 CGTTTACAGT
79946533 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
79946564 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATGATTTATGA
* *
79946595 ATAGGGCTTTGGCCCAG
1 A-AAGGCTTCGGCCCAG
79946612 ATTGTACTGA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
31 32 0.71
32 13 0.29
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.28
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATGATTTATGA
Found at i:79947399 original size:48 final size:48
Alignment explanation
Indices: 79947347--79947715 Score: 368
Period size: 48 Copynumber: 7.7 Consensus size: 48
79947337 TATGTGTGCT
* * * *
79947347 AGTGTAAGACCATGTGTGGGACATGGCGTTGGCCACGATATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCC
* * * * * *
79947395 AGTGTAAGACCATGTTTGGAAAATGGCATCGACAATGTTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCC
* ** * * *
79947443 AGTGTAAGACCATGTCTGGGACATGGCATCAACGTCGATATGTGTGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCC
* * * *
79947491 AGTGTAAGACCATGTTTGGGACATGGCGTCGGCTAC-ATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGA-TATGAGAGCC
* * * * ** **
79947539 AGTGTAAGACCATGTCTGGGACAAGGCATCG-GCATTGAGACAAGAGTT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCA-CGATATGAGAGCC
* * *
79947587 AGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCC
* * *
79947635 AGTGTATA-ACCATGTCTGGGACATGGCATCGACCTCGACATGTGAGCC
1 AGTGTA-AGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCC
79947683 AGTGTATA-ACCATGTCTGGGACATGGCATCGAC
1 AGTGTA-AGACCATGTCTGGGACATGGCATCGAC
79947716 AATTTACCCT
Statistics
Matches: 266, Mismatches: 50, Indels: 10
0.82 0.15 0.03
Matches are distributed among these distances:
47 2 0.01
48 261 0.98
49 3 0.01
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACCACGATATGAGAGCC
Found at i:79947595 original size:144 final size:144
Alignment explanation
Indices: 79947335--79947718 Score: 472
Period size: 144 Copynumber: 2.7 Consensus size: 144
79947325 GACATTGGGT
* * *
79947335 GATATGTGTGCTAGTGTAAGACCATGTGTGGGACATGGCGTTGGCCACGATATGAGAGCCAGTGT
1 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCTACGATATGAGAGCCAGTGT
* * ** **
79947400 AAGACCATGT-TTGGAAAATGGCATCGACAATGTTATGAGAGCCAGTGTAAGACCATGTCTGGGA
66 AAGACCATGTCTGGGACAA-GGCATCGACAATGAGACAAGAGCCAGTGTAAGACCATGTCTGGGA
*
79947464 CATGGCATCAACGTC
130 CATGGCATCAACCTC
*
79947479 GATATGTGTGCTAGTGTAAGACCATGTTTGGGACATGGCGTCGGCTAC-ATTATGAGAGCCAGTG
1 GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCTACGA-TATGAGAGCCAGTG
* * **
79947543 TAAGACCATGTCTGGGACAAGGCATCGGCATTGAGACAAGAGTTAGTGTAAGACCATGTCTGGGA
65 TAAGACCATGTCTGGGACAAGGCATCGACAATGAGACAAGAGCCAGTGTAAGACCATGTCTGGGA
*
79947608 CATGGCATCGACCTC
130 CATGGCATCAACCTC
* * * * * * *
79947623 GACATGTGAGCCAGTGTATA-ACCATGTCTGGGACATGGCATCGACCT-CGACATGTGAGCCAGT
1 GATATGTGTGCTAGTGTA-AGACCATGTCTGGGACATGGCGTCG-GCTACGATATGAGAGCCAGT
*
79947686 GTATA-ACCATGTCTGGGACATGGCATCGACAAT
64 GTA-AGACCATGTCTGGGACAAGGCATCGACAAT
79947719 TTACCCTATT
Statistics
Matches: 208, Mismatches: 26, Indels: 12
0.85 0.11 0.05
Matches are distributed among these distances:
143 1 0.00
144 196 0.94
145 11 0.05
ACGTcount: A:0.27, C:0.19, G:0.30, T:0.24
Consensus pattern (144 bp):
GATATGTGTGCTAGTGTAAGACCATGTCTGGGACATGGCGTCGGCTACGATATGAGAGCCAGTGT
AAGACCATGTCTGGGACAAGGCATCGACAATGAGACAAGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATCAACCTC
Found at i:79953179 original size:20 final size:18
Alignment explanation
Indices: 79953142--79953192 Score: 59
Period size: 20 Copynumber: 2.7 Consensus size: 18
79953132 CTATAGCAAC
79953142 TCACAATTT-CAATTATT
1 TCACAATTTACAATTATT
79953159 TCACACATTTACAACTTATT
1 TCACA-ATTTACAA-TTATT
*
79953179 TTACAACTTTACAA
1 TCACAA-TTTACAA
79953193 AATATCCCTT
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
17 5 0.17
18 4 0.14
19 4 0.14
20 16 0.55
ACGTcount: A:0.37, C:0.22, G:0.00, T:0.41
Consensus pattern (18 bp):
TCACAATTTACAATTATT
Found at i:79955680 original size:37 final size:37
Alignment explanation
Indices: 79955619--79955697 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
79955609 TTATTACGAA
* * * *
79955619 GTCTCACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
79955656 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
79955693 GTCTT
1 GTCTT
79955698 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.25, C:0.33, G:0.19, T:0.23
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:79955894 original size:47 final size:47
Alignment explanation
Indices: 79955816--79956210 Score: 691
Period size: 47 Copynumber: 8.4 Consensus size: 47
79955806 CCCTTCGGGA
* * * * * *
79955816 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
79955863 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79955910 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79955957 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
79956004 CTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956051 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956098 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956145 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
79956192 CTTATCACATATATACACT
1 CTTATCACATATATACACT
79956211 GTCTTGGCTG
Statistics
Matches: 336, Mismatches: 12, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 336 1.00
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:79969433 original size:43 final size:43
Alignment explanation
Indices: 79969359--79969536 Score: 184
Period size: 43 Copynumber: 4.2 Consensus size: 43
79969349 ATATCACATA
* *
79969359 AATCTCATA-CAATGCC-ATATCCCAGATATGGTCTTACATGT
1 AATCTCATATCAATGCCAATGTCCCAGACATGGTCTTACATGT
* * * *
79969400 TATCTCATATCGATGCCAATGTCCCAGTCATGGTCTTACATGA
1 AATCTCATATCAATGCCAATGTCCCAGACATGGTCTTACATGT
* * * * *
79969443 AATCAT-ATAACGATGCCAATGTCCAAAACATGGTCTTACACGT
1 AATC-TCATATCAATGCCAATGTCCCAGACATGGTCTTACATGT
* * *
79969486 AATCACA-ATACAATGCCAATGTCCCAGACATGGTTTTAGATGT
1 AATCTCATAT-CAATGCCAATGTCCCAGACATGGTCTTACATGT
79969529 AATCTCAT
1 AATCTCAT
79969537 CTCGGCAATC
Statistics
Matches: 109, Mismatches: 22, Indels: 9
0.78 0.16 0.06
Matches are distributed among these distances:
41 8 0.07
42 7 0.06
43 93 0.85
44 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.14, T:0.30
Consensus pattern (43 bp):
AATCTCATATCAATGCCAATGTCCCAGACATGGTCTTACATGT
Found at i:79971660 original size:21 final size:21
Alignment explanation
Indices: 79971626--79971671 Score: 58
Period size: 21 Copynumber: 2.2 Consensus size: 21
79971616 GTTTAGGCCA
* * *
79971626 TGTG-AAGAGTCACATGGCTG
1 TGTGAAAGAGGCACACGACTG
79971646 TGTGAAAGAGGCACACGACTG
1 TGTGAAAGAGGCACACGACTG
79971667 TGTGA
1 TGTGA
79971672 CCAAGTTACA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
20 4 0.18
21 18 0.82
ACGTcount: A:0.28, C:0.15, G:0.35, T:0.22
Consensus pattern (21 bp):
TGTGAAAGAGGCACACGACTG
Found at i:79973368 original size:48 final size:50
Alignment explanation
Indices: 79973313--79973531 Score: 176
Period size: 49 Copynumber: 4.5 Consensus size: 50
79973303 TGTGTCAGTT
* * **
79973313 TAAGACCATGTCTAGGACATGGCATCGACACGTATA-GAG-GTGTCTA-TG
1 TAAGACCATGTCTGGGACATGGCATCGACACATATATGAGAAAG-CTAGTG
* *
79973361 TAAGACCATGTCTGGGACATGGCATCAACACATATATGTGAAAGCTAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACACATATATGAGAAAGCTAGTG
* ** *
79973411 TAAGACCATGTCTGGGACATGGCATCGGC-C-TCGAT-TTTGATAG-TCAGTG
1 TAAGACCATGTCTGGGACATGGCATCGACACAT--ATATGAGAAAGCT-AGTG
* *
79973460 TAAGACCATGTCTGGGA-ATTGGCATC-A-AC-T-TGATG-GATGAGCCAGTG
1 TAAGACCATGTCTGGGACA-TGGCATCGACACATAT-ATGAGA-AAGCTAGTG
79973507 TAAGACCATGTCTGGGACATGGCAT
1 TAAGACCATGTCTGGGACATGGCAT
79973532 TGGTATTGCA
Statistics
Matches: 144, Mismatches: 14, Indels: 27
0.78 0.08 0.15
Matches are distributed among these distances:
45 1 0.01
46 2 0.01
47 30 0.21
48 39 0.27
49 40 0.28
50 32 0.22
ACGTcount: A:0.28, C:0.19, G:0.27, T:0.26
Consensus pattern (50 bp):
TAAGACCATGTCTGGGACATGGCATCGACACATATATGAGAAAGCTAGTG
Found at i:79973483 original size:49 final size:47
Alignment explanation
Indices: 79973166--79973531 Score: 195
Period size: 48 Copynumber: 7.7 Consensus size: 47
79973156 CACATTATGA
* * * *
79973166 GAGCAAGTGTAAGACCATGTCTGGGACCTGGCATCAGCATTGA-GACGA-
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAAC-TCGATG--GAT
* * *
79973214 GAGCTAGTG-AATGA-AATGTTTGGGACAT-GCATCAACCTCAAGAT-G-T
1 GAGCCAGTGTAA-GACCATGTCTGGGACATGGCATCAA-CTC--GATGGAT
* * **
79973260 AAGCCAGTGTAAGA-CATGTCTGGGACAT-TCATCGGCTACGA--GAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACT-CGATGGAT
* * * * * * * *
79973304 GTGTCAGTTTAAGACCATGTCTAGGACATGGCATCGACACGTATAGAG
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCG-ATGGAT
* * **
79973352 GTGTCTA-TGTAAGACCATGTCTGGGACATGGCATCAACACATATATGTGA-
1 GAG-CCAGTGTAAGACCATGTCTGGGACATGGCATC-A-AC-TCGATG-GAT
* * ** *
79973402 AAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATTTTGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-AACTCGA--TGGAT
* *
79973452 -AGTCAGTGTAAGACCATGTCTGGGA-ATTGGCATCAACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTGGGACA-TGGCATCAACTCGATGGAT
79973498 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
1 GAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
79973532 TGGTATTGCA
Statistics
Matches: 246, Mismatches: 46, Indels: 53
0.71 0.13 0.15
Matches are distributed among these distances:
43 1 0.00
44 13 0.05
45 17 0.07
46 45 0.18
47 46 0.19
48 51 0.21
49 37 0.15
50 34 0.14
51 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACTCGATGGAT
Found at i:79985791 original size:37 final size:37
Alignment explanation
Indices: 79985741--79985819 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
79985731 TTATTACGAA
* * *
79985741 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
79985778 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
79985815 GTCTT
1 GTCTT
79985820 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:79986114 original size:49 final size:49
Alignment explanation
Indices: 79985938--79986253 Score: 491
Period size: 49 Copynumber: 6.6 Consensus size: 49
79985928 CCCTTCGGGA
* * * * **
79985938 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
* * *
79985985 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
**
79986032 CTTAT--CATGCATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
79986079 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
79986128 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
79986177 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
79986226 CTTATCACATATATATACACTTTCACAT
1 CTTATCACATATATATACACTTTCACAT
79986254 ATGGGTTTAA
Statistics
Matches: 249, Mismatches: 14, Indels: 10
0.91 0.05 0.04
Matches are distributed among these distances:
45 1 0.00
46 1 0.00
47 81 0.33
49 166 0.67
ACGTcount: A:0.30, C:0.30, G:0.07, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
Found at i:79991851 original size:24 final size:24
Alignment explanation
Indices: 79991822--79991868 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
79991812 ATGAGTTGAG
*
79991822 AATTGGTAAGGTC-TCACGAGCTGC
1 AATTGGTAAGCTCAT-ACGAGCTGC
79991846 AATTGGTAAGCTCATACGAGCTG
1 AATTGGTAAGCTCATACGAGCTG
79991869 AGAATCGGTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 20 0.95
25 1 0.05
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.26
Consensus pattern (24 bp):
AATTGGTAAGCTCATACGAGCTGC
Found at i:79997303 original size:20 final size:20
Alignment explanation
Indices: 79997275--79997452 Score: 180
Period size: 20 Copynumber: 8.9 Consensus size: 20
79997265 TATCAGTATA
* *
79997275 TGGCACAAAGCCATGAGTAG
1 TGGCACAAAGCCATCAATAG
* *
79997295 TGGCTCAAAGCCATTCAGTAG
1 TGGCACAAAGCCA-TCAATAG
* *
79997316 CGGCACAAAGCCACCAATAG
1 TGGCACAAAGCCATCAATAG
79997336 TGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
*
79997356 TAGCAC-AAGCCATCAATAG
1 TGGCACAAAGCCATCAATAG
* * *
79997375 TGGCATAAAGCCTTGAATAG
1 TGGCACAAAGCCATCAATAG
* *
79997395 TGGCA-TAAGCCATCAATAA
1 TGGCACAAAGCCATCAATAG
* * *
79997414 TGGCACAAATCCATGAGTAG
1 TGGCACAAAGCCATCAATAG
* *
79997434 TGGCAGAAAGCCATAAATA
1 TGGCACAAAGCCATCAATA
79997453 TCGCAGTAAT
Statistics
Matches: 129, Mismatches: 26, Indels: 6
0.80 0.16 0.04
Matches are distributed among these distances:
19 32 0.25
20 80 0.62
21 17 0.13
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (20 bp):
TGGCACAAAGCCATCAATAG
Found at i:79997377 original size:39 final size:40
Alignment explanation
Indices: 79997275--79997452 Score: 180
Period size: 39 Copynumber: 4.5 Consensus size: 40
79997265 TATCAGTATA
* * * *
79997275 TGGCACAAAGCCATGAGTAGTGGCTCAAAGCCATTCAGTAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCA-TCAATAG
* *
79997316 CGGCACAAAGCCACCAATAGTGGCACAAAGCCATCAATAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
* * * *
79997356 TAGCAC-AAGCCATCAATAGTGGCATAAAGCCTTGAATAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
* * * * *
79997395 TGGCA-TAAGCCATCAATAATGGCACAAATCCATGAGTAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
* *
79997434 TGGCAGAAAGCCATAAATA
1 TGGCACAAAGCCATCAATA
79997453 TCGCAGTAAT
Statistics
Matches: 115, Mismatches: 20, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
39 66 0.57
40 21 0.18
41 28 0.24
ACGTcount: A:0.38, C:0.22, G:0.22, T:0.17
Consensus pattern (40 bp):
TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAATAG
Found at i:79997397 original size:59 final size:60
Alignment explanation
Indices: 79997275--79997446 Score: 186
Period size: 59 Copynumber: 2.9 Consensus size: 60
79997265 TATCAGTATA
* * * *
79997275 TGGCACAAAGCCATGAGTAGTGGCTCAAAGCCATTCAGTAGCGGCACAAAGCCACCAATAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCA-TCAGTAGTGGCACAAAGCCACCAATAG
* * * ***
79997336 TGGCACAAAGCCATCAATAGTAGCAC-AAGCCATCAATAGTGGCATAAAGCCTTGAATAG
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAGTAGTGGCACAAAGCCACCAATAG
* * * * *
79997395 TGGCA-TAAGCCATCAATAATGGCACAAATCCATGAGTAGTGGCAGAAAGCCA
1 TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAGTAGTGGCACAAAGCCA
79997447 TAAATATCGC
Statistics
Matches: 92, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
58 17 0.18
59 47 0.51
60 6 0.07
61 22 0.24
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.17
Consensus pattern (60 bp):
TGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAGTAGTGGCACAAAGCCACCAATAG
Found at i:79998194 original size:16 final size:16
Alignment explanation
Indices: 79998173--79998207 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
79998163 AAGGCCATCC
79998173 TTTCGAC-TTTTCGGCT
1 TTTCGACATTTT-GGCT
79998189 TTTCGACATTTTGGCT
1 TTTCGACATTTTGGCT
79998205 TTT
1 TTT
79998208 GCCGATCTAC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.09, C:0.20, G:0.17, T:0.54
Consensus pattern (16 bp):
TTTCGACATTTTGGCT
Found at i:80002162 original size:26 final size:26
Alignment explanation
Indices: 80002132--80002265 Score: 142
Period size: 27 Copynumber: 5.0 Consensus size: 26
80002122 TGGCTGCCAT
* * *
80002132 AACAGATAATGTGATAGAGTCACCAG
1 AACAGATAATGTGGTAAAGCCACCAG
80002158 AACAGATAATTGTGGTAAAGCCACCAG
1 AACAGATAA-TGTGGTAAAGCCACCAG
* *
80002185 AACAGATGTATGTGGCAAAGCCACCAG
1 AACAGAT-AATGTGGTAAAGCCACCAG
* *
80002212 AACAGATGTATGTGGCAAAGCCACCAG
1 AACAGAT-AATGTGGTAAAGCCACCAG
* * *
80002239 ATCAGATAATTGTGGCATAGCCACCAG
1 AACAGATAA-TGTGGTAAAGCCACCAG
80002266 GACACTTCCT
Statistics
Matches: 97, Mismatches: 8, Indels: 5
0.88 0.07 0.05
Matches are distributed among these distances:
26 10 0.10
27 86 0.89
28 1 0.01
ACGTcount: A:0.38, C:0.20, G:0.24, T:0.18
Consensus pattern (26 bp):
AACAGATAATGTGGTAAAGCCACCAG
Found at i:80002182 original size:27 final size:27
Alignment explanation
Indices: 80002152--80002265 Score: 151
Period size: 27 Copynumber: 4.2 Consensus size: 27
80002142 GTGATAGAGT
*
80002152 CACCAGAACAGATAATTGTGGTAAAGC
1 CACCAGAACAGATAATTGTGGCAAAGC
*
80002179 CACCAGAACAGAT-GTATGTGGCAAAGC
1 CACCAGAACAGATAAT-TGTGGCAAAGC
*
80002206 CACCAGAACAGAT-GTATGTGGCAAAGC
1 CACCAGAACAGATAAT-TGTGGCAAAGC
* *
80002233 CACCAGATCAGATAATTGTGGCATAGC
1 CACCAGAACAGATAATTGTGGCAAAGC
80002260 CACCAG
1 CACCAG
80002266 GACACTTCCT
Statistics
Matches: 80, Mismatches: 5, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
26 1 0.01
27 78 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.24, T:0.17
Consensus pattern (27 bp):
CACCAGAACAGATAATTGTGGCAAAGC
Found at i:80003674 original size:24 final size:23
Alignment explanation
Indices: 80003641--80003722 Score: 119
Period size: 24 Copynumber: 3.4 Consensus size: 23
80003631 GCCGGCCAAC
80003641 TCTTGCTCCTTGATCAGCTCCTAAA
1 TCTT-CTCCTT-ATCAGCTCCTAAA
80003666 TCTTCTCCTTTATCAGCTCCTAAA
1 TCTTCTCC-TTATCAGCTCCTAAA
*
80003690 TCCTCTCCCTTATCAGCTCCTAAA
1 TCTTCT-CCTTATCAGCTCCTAAA
80003714 TCTTCTCCT
1 TCTTCTCCT
80003723 GACAGCCTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
23 3 0.06
24 42 0.79
25 8 0.15
ACGTcount: A:0.18, C:0.37, G:0.06, T:0.39
Consensus pattern (23 bp):
TCTTCTCCTTATCAGCTCCTAAA
Found at i:80009704 original size:27 final size:27
Alignment explanation
Indices: 80009644--80009754 Score: 129
Period size: 27 Copynumber: 4.1 Consensus size: 27
80009634 AGCATGGCTG
* *
80009644 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
80009670 CCAAAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
80009697 CTAGAACAGAT-GTATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
*
80009724 CCA-AATCAGATAATTGTGGCATAGCCA
1 CCAGAA-CAGATAATTGTGGCAGAGCCA
80009751 CCAG
1 CCAG
80009755 GACGCTTCCT
Statistics
Matches: 71, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 15 0.21
27 55 0.77
28 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.23, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:80009704 original size:53 final size:54
Alignment explanation
Indices: 80009646--80009751 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
80009636 CATGGCTGCC
*
80009646 AGAACAGAT-AATGTGACAGAGTCACCAAAACAGATAATTGTGGCAGAGCCACT
1 AGAACAGATGAATGTGACAGAGCCACCAAAACAGATAATTGTGGCAGAGCCACT
* * * *
80009699 AGAACAGATGTATGTGGCAGAGCCACCAAATCAGATAATTGTGGCATAGCCAC
1 AGAACAGATGAATGTGACAGAGCCACCAAAACAGATAATTGTGGCAGAGCCAC
80009752 CAGGACGCTT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 9 0.19
54 38 0.81
ACGTcount: A:0.39, C:0.20, G:0.24, T:0.18
Consensus pattern (54 bp):
AGAACAGATGAATGTGACAGAGCCACCAAAACAGATAATTGTGGCAGAGCCACT
Found at i:80010656 original size:94 final size:94
Alignment explanation
Indices: 80010495--80010681 Score: 322
Period size: 94 Copynumber: 2.0 Consensus size: 94
80010485 CAACCCCTTA
* *
80010495 GGGCTACAAGTCCAAAACGACAGCCTCCCTAACCTTTAGGGATTTTGACTTTTTCTAAAATATGA
1 GGGCTACAAGTCCAAAACGACAGCCTCCCTAACCTTTAGGGATTTAGACTTTTTCTAAAATACGA
80010560 AATAAAGACTAGGTTGAAAAGACTTACCC
66 AATAAAGACTAGGTTGAAAAGACTTACCC
**
80010589 GGGCTACAAGTCCAAAACGACAGCCTCCCTCTCCTTTAGGGATTTCAG-CTTTTTCTAAAATACG
1 GGGCTACAAGTCCAAAACGACAGCCTCCCTAACCTTTAGGGATTT-AGACTTTTTCTAAAATACG
80010653 AAATAAAGACTAGGTTGAAAAGACTTACC
65 AAATAAAGACTAGGTTGAAAAGACTTACC
80010682 AGCAATTCCT
Statistics
Matches: 88, Mismatches: 4, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
94 87 0.99
95 1 0.01
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.26
Consensus pattern (94 bp):
GGGCTACAAGTCCAAAACGACAGCCTCCCTAACCTTTAGGGATTTAGACTTTTTCTAAAATACGA
AATAAAGACTAGGTTGAAAAGACTTACCC
Found at i:80011260 original size:24 final size:23
Alignment explanation
Indices: 80011229--80011307 Score: 113
Period size: 24 Copynumber: 3.3 Consensus size: 23
80011219 AGCCAACTTT
*
80011229 TTCTCCTTGATCAGCTCCTAAAAC
1 TTCTCCTT-ATCAGCTCCTAAATC
80011253 TTCTCCTTTATCAGCTCCTAAATC
1 TTCTCC-TTATCAGCTCCTAAATC
*
80011277 CTCTCCCTTATCAGCTCCTAAATC
1 TTCT-CCTTATCAGCTCCTAAATC
80011301 TTCTCCT
1 TTCTCCT
80011308 GACATCCTTT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
23 3 0.06
24 43 0.86
25 4 0.08
ACGTcount: A:0.20, C:0.37, G:0.05, T:0.38
Consensus pattern (23 bp):
TTCTCCTTATCAGCTCCTAAATC
Found at i:80011778 original size:34 final size:34
Alignment explanation
Indices: 80011740--80011804 Score: 85
Period size: 34 Copynumber: 1.9 Consensus size: 34
80011730 AGCCCATATC
*
80011740 AGTAACAAAATGGGCCTGAGCCCATTACAGTAAT
1 AGTAACAAAATGGGCCTGAGCCCAATACAGTAAT
*** *
80011774 AGTAACAGTGTGGGCCTTAGCCCAATACAGT
1 AGTAACAAAATGGGCCTGAGCCCAATACAGT
80011805 CACAATACAG
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
34 26 1.00
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (34 bp):
AGTAACAAAATGGGCCTGAGCCCAATACAGTAAT
Found at i:80012015 original size:20 final size:20
Alignment explanation
Indices: 80011992--80012163 Score: 240
Period size: 20 Copynumber: 8.7 Consensus size: 20
80011982 AGTAGCGGCT
80011992 CAAAGCCATCAATAGTGGCA
1 CAAAGCCATCAATAGTGGCA
*
80012012 CAAAGGCATCAATAGTGGCA
1 CAAAGCCATCAATAGTGGCA
*
80012032 C-AAGCCATCAGTAGTGGCA
1 CAAAGCCATCAATAGTGGCA
* *
80012051 TAAAGCCATGAATAGTGGCA
1 CAAAGCCATCAATAGTGGCA
*
80012071 CAAAGCCATCATTAGTGGCA
1 CAAAGCCATCAATAGTGGCA
*
80012091 C-AAGCCATCAATAATGGCA
1 CAAAGCCATCAATAGTGGCA
*
80012110 CAAAGCCATGAATAGTGGCA
1 CAAAGCCATCAATAGTGGCA
* *
80012130 CAAAGCCATGAGTAGTGGCA
1 CAAAGCCATCAATAGTGGCA
*
80012150 CAAAGCCATAAATA
1 CAAAGCCATCAATA
80012164 TCGCAACAAT
Statistics
Matches: 134, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
19 33 0.25
20 101 0.75
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (20 bp):
CAAAGCCATCAATAGTGGCA
Found at i:80012037 original size:39 final size:40
Alignment explanation
Indices: 80011992--80012163 Score: 240
Period size: 39 Copynumber: 4.3 Consensus size: 40
80011982 AGTAGCGGCT
*
80011992 CAAAGCCATCAATAGTGGCACAAAGGCATCAATAGTGGCA
1 CAAAGCCATCAATAGTGGCACAAAGCCATCAATAGTGGCA
* * *
80012032 C-AAGCCATCAGTAGTGGCATAAAGCCATGAATAGTGGCA
1 CAAAGCCATCAATAGTGGCACAAAGCCATCAATAGTGGCA
* *
80012071 CAAAGCCATCATTAGTGGCAC-AAGCCATCAATAATGGCA
1 CAAAGCCATCAATAGTGGCACAAAGCCATCAATAGTGGCA
* * *
80012110 CAAAGCCATGAATAGTGGCACAAAGCCATGAGTAGTGGCA
1 CAAAGCCATCAATAGTGGCACAAAGCCATCAATAGTGGCA
*
80012150 CAAAGCCATAAATA
1 CAAAGCCATCAATA
80012164 TCGCAACAAT
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 70 0.60
40 46 0.40
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (40 bp):
CAAAGCCATCAATAGTGGCACAAAGCCATCAATAGTGGCA
Found at i:80012074 original size:59 final size:59
Alignment explanation
Indices: 80011992--80012163 Score: 254
Period size: 59 Copynumber: 2.9 Consensus size: 59
80011982 AGTAGCGGCT
* * * *
80011992 CAAAGCCATCAATAGTGGCACAAAGGCATCAATAGTGGCACAAGCCATCAGTAGTGGCA
1 CAAAGCCATGAATAGTGGCACAAAGCCATCAATAGTGGCACAAGCCATCAATAATGGCA
* *
80012051 TAAAGCCATGAATAGTGGCACAAAGCCATCATTAGTGGCACAAGCCATCAATAATGGCA
1 CAAAGCCATGAATAGTGGCACAAAGCCATCAATAGTGGCACAAGCCATCAATAATGGCA
* * *
80012110 CAAAGCCATGAATAGTGGCACAAAGCCATGAGTAGTGGCACAAAGCCATAAATA
1 CAAAGCCATGAATAGTGGCACAAAGCCATCAATAGTGGCAC-AAGCCATCAATA
80012164 TCGCAACAAT
Statistics
Matches: 102, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
59 91 0.89
60 11 0.11
ACGTcount: A:0.40, C:0.22, G:0.22, T:0.16
Consensus pattern (59 bp):
CAAAGCCATGAATAGTGGCACAAAGCCATCAATAGTGGCACAAGCCATCAATAATGGCA
Found at i:80012116 original size:79 final size:79
Alignment explanation
Indices: 80011958--80012163 Score: 270
Period size: 79 Copynumber: 2.6 Consensus size: 79
80011948 AGCTACCAGT
* * * * *
80011958 ATCAGTATATGGCAAAAATCCATGAGTAGCGGCTCAAAGCCATCAATAGTGGCACAAAGGCATCA
1 ATCAGTA-GTGGCAAAAAGCCATGAGTAGTGGCACAAAGCCATCAATAGTGGCACAAAGCCATCA
*
80012023 ATAGTGGCACAAGCC
65 ATAATGGCACAAGCC
* * *
80012038 ATCAGTAGTGGCATAAAGCCATGAATAGTGGCACAAAGCCATCATTAGTGGCAC-AAGCCATCAA
1 ATCAGTAGTGGCAAAAAGCCATGAGTAGTGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAA
80012102 TAATGGCACAAAGCC
66 TAATGGCAC-AAGCC
* * * *
80012117 ATGAATAGTGGCACAAAGCCATGAGTAGTGGCACAAAGCCATAAATA
1 ATCAGTAGTGGCAAAAAGCCATGAGTAGTGGCACAAAGCCATCAATA
80012164 TCGCAACAAT
Statistics
Matches: 110, Mismatches: 15, Indels: 3
0.86 0.12 0.02
Matches are distributed among these distances:
78 17 0.15
79 86 0.78
80 7 0.06
ACGTcount: A:0.39, C:0.21, G:0.22, T:0.17
Consensus pattern (79 bp):
ATCAGTAGTGGCAAAAAGCCATGAGTAGTGGCACAAAGCCATCAATAGTGGCACAAAGCCATCAA
TAATGGCACAAGCC
Found at i:80012172 original size:20 final size:20
Alignment explanation
Indices: 80011967--80012163 Score: 227
Period size: 20 Copynumber: 9.9 Consensus size: 20
80011957 TATCAGTATA
* * *
80011967 TGGCAAAAATCCATGAGTAG
1 TGGCACAAAGCCATGAATAG
* * *
80011987 CGGCTCAAAGCCATCAATAG
1 TGGCACAAAGCCATGAATAG
* *
80012007 TGGCACAAAGGCATCAATAG
1 TGGCACAAAGCCATGAATAG
* *
80012027 TGGCAC-AAGCCATCAGTAG
1 TGGCACAAAGCCATGAATAG
*
80012046 TGGCATAAAGCCATGAATAG
1 TGGCACAAAGCCATGAATAG
* *
80012066 TGGCACAAAGCCATCATTAG
1 TGGCACAAAGCCATGAATAG
* *
80012086 TGGCAC-AAGCCATCAATAA
1 TGGCACAAAGCCATGAATAG
80012105 TGGCACAAAGCCATGAATAG
1 TGGCACAAAGCCATGAATAG
*
80012125 TGGCACAAAGCCATGAGTAG
1 TGGCACAAAGCCATGAATAG
*
80012145 TGGCACAAAGCCATAAATA
1 TGGCACAAAGCCATGAATA
80012164 TCGCAACAAT
Statistics
Matches: 151, Mismatches: 24, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
19 33 0.22
20 118 0.78
ACGTcount: A:0.39, C:0.22, G:0.23, T:0.17
Consensus pattern (20 bp):
TGGCACAAAGCCATGAATAG
Found at i:80021856 original size:43 final size:43
Alignment explanation
Indices: 80021740--80021856 Score: 162
Period size: 43 Copynumber: 2.7 Consensus size: 43
80021730 CTGCATGTTT
* * * *
80021740 TGTAAAAAGGATTTAACCCAGTCGGGTAATCTATTGATCTTAG
1 TGTAGAAAGGATTTAACCCAGACGGGTAATCTATTAATCTCAG
* *
80021783 TGTAGAAAGGATTTAACCCAGATGGATAATCTATTAATCTCAG
1 TGTAGAAAGGATTTAACCCAGACGGGTAATCTATTAATCTCAG
* *
80021826 TGTAGAAAGGATTTAGCCCGGACGGGTAATC
1 TGTAGAAAGGATTTAACCCAGACGGGTAATC
80021857 CTGAAACGAG
Statistics
Matches: 64, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 64 1.00
ACGTcount: A:0.33, C:0.15, G:0.23, T:0.29
Consensus pattern (43 bp):
TGTAGAAAGGATTTAACCCAGACGGGTAATCTATTAATCTCAG
Found at i:80026957 original size:37 final size:37
Alignment explanation
Indices: 80026902--80026979 Score: 120
Period size: 37 Copynumber: 2.1 Consensus size: 37
80026892 TATTACGAAA
** *
80026902 TCTTACCCGGACGTAATCTCCACACGAAGTTATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
*
80026939 TCTTACCCGGACAAAATCTCCACACGTAGTCATCGGG
1 TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
80026976 TCTT
1 TCTT
80026980 TAGAGCTCAG
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.26
Consensus pattern (37 bp):
TCTTACCCGGACAAAATCTCCACACGAAGTCATCGGG
Found at i:80027225 original size:49 final size:47
Alignment explanation
Indices: 80027098--80027459 Score: 544
Period size: 49 Copynumber: 7.6 Consensus size: 47
80027088 CCCTTCGGGA
* * * * * *
80027098 CTTATCACATTTATGCACTTTCACATCCATCACATTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80027145 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80027192 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80027241 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80027288 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80027337 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
80027386 CCTATTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTA-TCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80027434 CTTATCACATATATACACTTTCACAT
1 CTTATCACATATATACACTTTCACAT
80027460 ATGGGTTTAA
Statistics
Matches: 292, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 111 0.38
48 42 0.14
49 135 0.46
50 4 0.01
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80027277 original size:96 final size:96
Alignment explanation
Indices: 80027098--80027459 Score: 561
Period size: 96 Copynumber: 3.8 Consensus size: 96
80027088 CCCTTCGGGA
* * * * * * *
80027098 CTTATCACAT-T-TATGCACTTTCACATCCATCACATTGGCCACTCGGCCCTGTCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
80027161 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
* *
80027192 CTTATCACATATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTATCACACATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
*
80027257 ACTTTCACATTCATCACATCGGCCATTAAGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
80027288 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGCCTTATCACATATATAT
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATAT
80027353 ACACTTTCACATTCATCACATCGGCCATTAGGC
64 ACACTTTCACATTCATCACATCGGCCATTAGGC
*
80027386 CCTATTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
1 CTTA-TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
80027449 CACTTTCACAT
65 CACTTTCACAT
80027460 ATGGGTTTAA
Statistics
Matches: 247, Mismatches: 16, Indels: 9
0.91 0.06 0.03
Matches are distributed among these distances:
94 10 0.04
95 19 0.08
96 128 0.52
97 46 0.19
98 40 0.16
99 4 0.02
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80031298 original size:15 final size:15
Alignment explanation
Indices: 80031278--80031307 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
80031268 AGCAAAAAGC
80031278 ATGAAACTAAGAAGT
1 ATGAAACTAAGAAGT
80031293 ATGAAACTAAGAAGT
1 ATGAAACTAAGAAGT
80031308 CGCAAGAAGC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.53, C:0.07, G:0.20, T:0.20
Consensus pattern (15 bp):
ATGAAACTAAGAAGT
Found at i:80031323 original size:25 final size:25
Alignment explanation
Indices: 80031286--80031333 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
80031276 GCATGAAACT
* *
80031286 AAGAAGTATGAAACTAAGAAGTCGC
1 AAGAAGCAGGAAACTAAGAAGTCGC
80031311 AAGAAGCAGGAAACTAAGAAGTC
1 AAGAAGCAGGAAACTAAGAAGTC
80031334 TAGCTAACTA
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.50, C:0.12, G:0.25, T:0.12
Consensus pattern (25 bp):
AAGAAGCAGGAAACTAAGAAGTCGC
Found at i:80038432 original size:13 final size:13
Alignment explanation
Indices: 80038414--80038443 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
80038404 CTGGTAATCA
80038414 TGTCACACGGCCG
1 TGTCACACGGCCG
*
80038427 TGTCACACGGGCG
1 TGTCACACGGCCG
80038440 TGTC
1 TGTC
80038444 CCTGCTGAGC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.13, C:0.33, G:0.33, T:0.20
Consensus pattern (13 bp):
TGTCACACGGCCG
Found at i:80054556 original size:14 final size:16
Alignment explanation
Indices: 80054526--80054558 Score: 52
Period size: 14 Copynumber: 2.2 Consensus size: 16
80054516 CACCCCATGC
80054526 AATGTAACATAATATA
1 AATGTAACATAATATA
80054542 AATGT-ACAT-ATATA
1 AATGTAACATAATATA
80054556 AAT
1 AAT
80054559 AAGATGGCAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 8 0.47
15 4 0.24
16 5 0.29
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (16 bp):
AATGTAACATAATATA
Found at i:80068412 original size:41 final size:41
Alignment explanation
Indices: 80068354--80068432 Score: 140
Period size: 41 Copynumber: 1.9 Consensus size: 41
80068344 AAGCCACCAG
*
80068354 TGGATCCACGGTCGTCAAGCAATCATGCGATCCTCAATCGA
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGA
*
80068395 TGGATCCACGGTTGTCAAGCAACCATGCGATCCTCAAT
1 TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
80068433 TTCTTCCTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 36 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.23
Consensus pattern (41 bp):
TGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCGA
Found at i:80068726 original size:27 final size:26
Alignment explanation
Indices: 80068692--80069003 Score: 165
Period size: 27 Copynumber: 11.6 Consensus size: 26
80068682 GGTAAATCTA
*
80068692 CAAACCAAGGGTATTTCGATAATTTT
1 CAAATCAAGGGTATTTCGATAATTTT
* * *
80068718 GAAAGCCAATGGTATTT--ATGCAATATTT
1 CAAA-TCAAGGGTATTTCGAT--AAT-TTT
80068746 CAAAGTCAAGGGTATTTCTG-TAATTTT
1 CAAA-TCAAGGGTATTTC-GATAATTTT
* * *
80068773 GTAAATTAAGGGTATTTCTATAATTTT
1 -CAAATCAAGGGTATTTCGATAATTTT
80068800 CCAAATCAAGGGTATTTCGATAATTTT
1 -CAAATCAAGGGTATTTCGATAATTTT
* * *
80068827 CCAAATCAGGGGTATTTTGGTAATTTT
1 -CAAATCAAGGGTATTTCGATAATTTT
*
80068854 ACAAAT-AGAGGGTATTT-TAGTAATTTT
1 -CAAATCA-AGGGTATTTCGA-TAATTTT
* * *
80068881 ACAAGTTAAGGGTATTTCGGTAATTTT
1 -CAAATCAAGGGTATTTCGATAATTTT
* ** *
80068908 ACAAGTTGAGGG-ATTTCGGTAA-TTT
1 -CAAATCAAGGGTATTTCGATAATTTT
* * *
80068933 CAAAAATC-AGCAGTATTTTGGTAATTTT
1 C--AAATCAAG-GGTATTTCGATAATTTT
* *
80068961 ACAAATCAGGGGTATTTAG-TAATTTT
1 -CAAATCAAGGGTATTTCGATAATTTT
* *
80068987 GTAAACCAAGGGTATTT
1 -CAAATCAAGGGTATTT
80069004 TAGTAATTCT
Statistics
Matches: 232, Mismatches: 34, Indels: 40
0.76 0.11 0.13
Matches are distributed among these distances:
24 1 0.00
25 7 0.03
26 38 0.16
27 156 0.67
28 28 0.12
29 1 0.00
30 1 0.00
ACGTcount: A:0.33, C:0.10, G:0.19, T:0.39
Consensus pattern (26 bp):
CAAATCAAGGGTATTTCGATAATTTT
Found at i:80068760 original size:55 final size:54
Alignment explanation
Indices: 80068692--80068826 Score: 150
Period size: 55 Copynumber: 2.5 Consensus size: 54
80068682 GGTAAATCTA
* * *
80068692 CAAACCAAGGGTATTTCGATAATTTTG-AAAGCCAATGGTATTTATGCAATATTT-
1 CAAATCAAGGGTATTTCGATAATTTTGTAAA-CCAAGGGTATTTATACAAT-TTTC
** * *
80068746 CAAAGTCAAGGGTATTTCTG-TAATTTTGTAAATTAAGGGTATTTCTATAATTTTC
1 CAAA-TCAAGGGTATTTC-GATAATTTTGTAAACCAAGGGTATTTATACAATTTTC
80068801 CAAATCAAGGGTATTTCGATAATTTT
1 CAAATCAAGGGTATTTCGATAATTTT
80068827 CCAAATCAGG
Statistics
Matches: 69, Mismatches: 7, Indels: 10
0.80 0.08 0.12
Matches are distributed among these distances:
53 1 0.01
54 27 0.39
55 37 0.54
56 4 0.06
ACGTcount: A:0.33, C:0.11, G:0.16, T:0.39
Consensus pattern (54 bp):
CAAATCAAGGGTATTTCGATAATTTTGTAAACCAAGGGTATTTATACAATTTTC
Found at i:80068824 original size:54 final size:53
Alignment explanation
Indices: 80068670--80069011 Score: 232
Period size: 54 Copynumber: 6.3 Consensus size: 53
80068660 TTTCACCCTA
* * * * *
80068670 CAAGGGTGTTTTGGTAAATCTACAAACCAAGGGTATTTCGATAATTTTG-AAAGC
1 CAAGGGTATTTT-GTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAA-T
* * *
80068724 CAATGGTATTTATGCAATATTT-CAAAGTCAAGGGTATTTCTG-TAATTTTGTAAAT
1 CAAGGGTATTT-TGTAAT-TTTACAAA-TCAAGGGTATTTC-GATAATTTTGCAAAT
* * * *
80068779 TAAGGGTATTTCTATAATTTTCCAAATCAAGGGTATTTCGATAATTTTCCAAAT
1 CAAGGGTATTT-TGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
* * * *
80068833 CAGGGGTATTTTGGTAATTTTACAAAT-AGAGGGTATTT-TAGTAATTTTACAAGT
1 CAAGGGTATTTT-GTAATTTTACAAATCA-AGGGTATTTCGA-TAATTTTGCAAAT
* * * ** * ***
80068887 TAAGGGTATTTCGGTAATTTTACAAGTTGAGGG-ATTTCGGTAATTTCAAAAAT
1 CAAGGGTATTT-TGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
* * * * *
80068940 C-AGCAGTATTTTGGTAATTTTACAAATCAGGGGTATTTAG-TAATTTTGTAAAC
1 CAAG-GGTATTTT-GTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
80068993 CAAGGGTATTTTAGTAATT
1 CAAGGGTATTTT-GTAATT
80069012 CTACCCTACA
Statistics
Matches: 226, Mismatches: 45, Indels: 35
0.74 0.15 0.11
Matches are distributed among these distances:
52 2 0.01
53 63 0.28
54 117 0.52
55 40 0.18
56 4 0.02
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.39
Consensus pattern (53 bp):
CAAGGGTATTTTGTAATTTTACAAATCAAGGGTATTTCGATAATTTTGCAAAT
Found at i:80068878 original size:81 final size:80
Alignment explanation
Indices: 80068746--80069011 Score: 238
Period size: 81 Copynumber: 3.3 Consensus size: 80
80068736 TGCAATATTT
* * *
80068746 CAAAGTCAAGGGTATTTCT-GTAATTTTGTAAATTA-AGGGTATTTCTA-TAATTTTCCAAATCA
1 CAAA-TCAAGGGTATTT-TGGTAATTTT-AAAAATAGAGGGTATTT-TAGTAATTTTACAAATCA
*
80068808 AGGGTATTTCGATAATTTTC
62 AGGGTATTTCG-TAATTTTA
* * * *
80068828 CAAATCAGGGGTATTTTGGTAATTTTACAAATAGAGGGTATTTTAGTAATTTTACAAGTTAAGGG
1 CAAATCAAGGGTATTTTGGTAATTTTAAAAATAGAGGGTATTTTAGTAATTTTACAAATCAAGGG
80068893 TATTTCGGTAATTTTA
66 TATTTC-GTAATTTTA
* ** * * * *
80068909 CAAGTTGAGGG-ATTTCGGTAATTTCAAAAATCAGCA--GTATTTTGGTAATTTTACAAATCAGG
1 CAAATCAAGGGTATTTTGGTAATTTTAAAAAT-AG-AGGGTATTTTAGTAATTTTACAAATCAAG
* *
80068971 GGTATTTAGTAATTTTG
64 GGTATTTCGTAATTTTA
* * *
80068988 TAAACCAAGGGTATTTTAGTAATT
1 CAAATCAAGGGTATTTTGGTAATT
80069012 CTACCCTACA
Statistics
Matches: 149, Mismatches: 28, Indels: 16
0.77 0.15 0.08
Matches are distributed among these distances:
79 14 0.09
80 63 0.42
81 66 0.44
82 6 0.04
ACGTcount: A:0.32, C:0.09, G:0.19, T:0.40
Consensus pattern (80 bp):
CAAATCAAGGGTATTTTGGTAATTTTAAAAATAGAGGGTATTTTAGTAATTTTACAAATCAAGGG
TATTTCGTAATTTTA
Found at i:80069030 original size:27 final size:27
Alignment explanation
Indices: 80069000--80069091 Score: 139
Period size: 27 Copynumber: 3.4 Consensus size: 27
80068990 AACCAAGGGT
*
80069000 ATTTTAGTAATTCTACCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
80069027 ATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAGGGGC
* *
80069054 ATTTCAGTAATTCTACCCTACAAGGGT
1 ATTTCAGTAATTCTACCCTACAGGGGC
*
80069081 ATTTAAGTAAT
1 ATTTCAGTAAT
80069092 AGTAGCCTAC
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 59 1.00
ACGTcount: A:0.29, C:0.20, G:0.16, T:0.35
Consensus pattern (27 bp):
ATTTCAGTAATTCTACCCTACAGGGGC
Found at i:80069101 original size:54 final size:54
Alignment explanation
Indices: 80069000--80069103 Score: 145
Period size: 54 Copynumber: 1.9 Consensus size: 54
80068990 AACCAAGGGT
* * * * *
80069000 ATTTTAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTATCCTACAGGGGC
1 ATTTCAGTAATTCTACCCTACAAGGGCATTTAAGTAATACTAGCCTACAGGGGC
* *
80069054 ATTTCAGTAATTCTACCCTACAAGGGTATTTAAGTAATAGTAGCCTACAG
1 ATTTCAGTAATTCTACCCTACAAGGGCATTTAAGTAATACTAGCCTACAG
80069104 ATATGAGATT
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (54 bp):
ATTTCAGTAATTCTACCCTACAAGGGCATTTAAGTAATACTAGCCTACAGGGGC
Found at i:80079969 original size:27 final size:27
Alignment explanation
Indices: 80079921--80080076 Score: 142
Period size: 27 Copynumber: 5.8 Consensus size: 27
80079911 GCGAGGCTGC
* *
80079921 CAGATATTGTGAC-GAAGTCACCAGATA
1 CAGATATTGTGGCAG-AGCCACCAGATA
* *
80079948 TAGATATTGTGGTAGAGCCACCAGA-A
1 CAGATATTGTGGCAGAGCCACCAGATA
*
80079974 CAGATATATATGGCAGAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
* *
80080001 CAGATAATCGTGGCATAGCCACCAGA-A
1 CAGAT-ATTGTGGCAGAGCCACCAGATA
* *
80080028 CAGATATATATGGCAAAGCCACCAGAT-
1 CAGATAT-TGTGGCAGAGCCACCAGATA
*
80080055 CAGATAATTGTGGCATAGCCAC
1 CAGAT-ATTGTGGCAGAGCCAC
80080077 TAGGACGCTT
Statistics
Matches: 106, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
26 9 0.08
27 92 0.87
28 5 0.05
ACGTcount: A:0.37, C:0.21, G:0.22, T:0.20
Consensus pattern (27 bp):
CAGATATTGTGGCAGAGCCACCAGATA
Found at i:80080021 original size:54 final size:54
Alignment explanation
Indices: 80079963--80080076 Score: 210
Period size: 54 Copynumber: 2.1 Consensus size: 54
80079953 ATTGTGGTAG
*
80079963 AGCCACCAGAACAGATATATATGGCAGAGCCACCAGATCAGATAATCGTGGCAT
1 AGCCACCAGAACAGATATATATGGCAAAGCCACCAGATCAGATAATCGTGGCAT
*
80080017 AGCCACCAGAACAGATATATATGGCAAAGCCACCAGATCAGATAATTGTGGCAT
1 AGCCACCAGAACAGATATATATGGCAAAGCCACCAGATCAGATAATCGTGGCAT
80080071 AGCCAC
1 AGCCAC
80080077 TAGGACGCTT
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.17
Consensus pattern (54 bp):
AGCCACCAGAACAGATATATATGGCAAAGCCACCAGATCAGATAATCGTGGCAT
Found at i:80095557 original size:27 final size:27
Alignment explanation
Indices: 80095527--80095733 Score: 333
Period size: 27 Copynumber: 7.6 Consensus size: 27
80095517 TAAATTGTGC
* *
80095527 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
80095554 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
80095582 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
80095609 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGATTATGT
*
80095637 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGATTATGT
80095664 AGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGT-TGATTATGT
*
80095692 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGATTATGT
*
80095719 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80095734 GACTTAATAA
Statistics
Matches: 169, Mismatches: 8, Indels: 6
0.92 0.04 0.03
Matches are distributed among these distances:
27 91 0.54
28 78 0.46
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGATTATGT
Found at i:80095591 original size:55 final size:55
Alignment explanation
Indices: 80095527--80095733 Score: 360
Period size: 55 Copynumber: 3.8 Consensus size: 55
80095517 TAAATTGTGC
* *
80095527 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
80095582 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
*
80095637 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
* * *
80095692 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
80095734 GACTTAATAA
Statistics
Matches: 146, Mismatches: 6, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 146 1.00
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
Found at i:80099422 original size:40 final size:40
Alignment explanation
Indices: 80099364--80099451 Score: 124
Period size: 40 Copynumber: 2.2 Consensus size: 40
80099354 GGTGTTACAT
* *
80099364 AAATGCCTTTGGGACTTAGCCCGGATATAGTC-GCTAGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAG-CAACTAGCAC
* *
80099404 AAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTCGCAC
1 AAATGCCTTCGGGACTTAGCCCGGATATAGCAACTAGCAC
80099444 AAATGCCT
1 AAATGCCT
80099452 NNNNNNNNNN
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
39 1 0.02
40 42 0.98
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
AAATGCCTTCGGGACTTAGCCCGGATATAGCAACTAGCAC
Found at i:80120258 original size:27 final size:27
Alignment explanation
Indices: 80120220--80120274 Score: 92
Period size: 27 Copynumber: 2.0 Consensus size: 27
80120210 AAGGAGAGAG
80120220 AAAACATATGTTCTTTCTAATACTATC
1 AAAACATATGTTCTTTCTAATACTATC
* *
80120247 AAAACATATGTTCTTTCTAGTATTATC
1 AAAACATATGTTCTTTCTAATACTATC
80120274 A
1 A
80120275 TCCTTCTATA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.36, C:0.16, G:0.05, T:0.42
Consensus pattern (27 bp):
AAAACATATGTTCTTTCTAATACTATC
Found at i:80122963 original size:26 final size:26
Alignment explanation
Indices: 80122934--80123086 Score: 243
Period size: 26 Copynumber: 5.9 Consensus size: 26
80122924 TGATACAAAT
* *
80122934 TGATAATAGGTTAGGTAAATGTTCAA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80122960 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80122986 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80123012 TGATAATGGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80123038 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
**
80123064 TGATAATGATTTAGGTAAATGTT
1 TGATAATGGGTTAGGTAAATGTT
80123087 NNNNNNNNNN
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 119 1.00
ACGTcount: A:0.34, C:0.05, G:0.24, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80124229 original size:28 final size:26
Alignment explanation
Indices: 80124198--80124261 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
80124188 AATTACTTGA
* **
80124198 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
80124226 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
80124252 ATACCCCTAG
1 ATACCCCTAG
80124262 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:80124406 original size:27 final size:27
Alignment explanation
Indices: 80124366--80124560 Score: 272
Period size: 27 Copynumber: 7.2 Consensus size: 27
80124356 AGGAAGCGTC
*
80124366 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
80124393 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
80124420 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
80124447 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
*
80124474 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
80124501 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
80124528 CTGGTGGCTCTGCCACAA-TATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
80124555 CTGGTG
1 CTGGTG
80124561 ACTTCGTCAC
Statistics
Matches: 150, Mismatches: 11, Indels: 14
0.86 0.06 0.08
Matches are distributed among these distances:
26 12 0.08
27 133 0.89
28 5 0.03
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:80124448 original size:54 final size:54
Alignment explanation
Indices: 80124366--80124560 Score: 365
Period size: 54 Copynumber: 3.6 Consensus size: 54
80124356 AGGAAGCGTC
80124366 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
80124420 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
80124474 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
80124528 CTGGTGGCTCTGCCACAA-TATCTGTATCTGGTG
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTG
80124561 ACTTCGTCAC
Statistics
Matches: 139, Mismatches: 1, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
53 6 0.04
54 133 0.96
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:80128157 original size:15 final size:15
Alignment explanation
Indices: 80128137--80128168 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
80128127 CTTAATTCTG
*
80128137 TTAGTTTTATTTAAC
1 TTAGTTTAATTTAAC
80128152 TTAGTTTAATTTAAC
1 TTAGTTTAATTTAAC
80128167 TT
1 TT
80128169 CTATAGGTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.06, T:0.59
Consensus pattern (15 bp):
TTAGTTTAATTTAAC
Found at i:80130912 original size:23 final size:24
Alignment explanation
Indices: 80130886--80130931 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
80130876 TAAGCTTCTT
*
80130886 GATA-GGCTCTTTGTGAGCTTCCC
1 GATATGGCTCTTGGTGAGCTTCCC
80130909 GATATGGCTCTTGGTGAGCTTCC
1 GATATGGCTCTTGGTGAGCTTCC
80130932 TATTATATTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
23 4 0.19
24 17 0.81
ACGTcount: A:0.13, C:0.24, G:0.28, T:0.35
Consensus pattern (24 bp):
GATATGGCTCTTGGTGAGCTTCCC
Found at i:80135654 original size:47 final size:47
Alignment explanation
Indices: 80135591--80135941 Score: 603
Period size: 47 Copynumber: 7.4 Consensus size: 47
80135581 CCCTTCGGGA
* * * *
80135591 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80135638 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80135685 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80135732 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80135779 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
80135826 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
80135873 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
80135922 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
80135942 GTACATCAAT
Statistics
Matches: 293, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 250 0.85
49 43 0.15
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:80148864 original size:65 final size:65
Alignment explanation
Indices: 80148757--80148908 Score: 180
Period size: 65 Copynumber: 2.3 Consensus size: 65
80148747 TGAGGACTAT
* * * **
80148757 CGCAGCTCTTTGTGAG-AGTCCTATTATATGATCGGTTATGATCCTGCTTATATTGCGGACACAA
1 CGCAGCTCTTTGTGAGCA-TCCTATTATATAATCAGTTATGATCCTGCATATATTGCAAACACAA
80148821 A
65 A
* * * * *
80148822 CGCAGCTCTGTGTGAGCATCCTATTTTATAATCAGTTGTGATCCTGCATATGTTGCAAACTCAAA
1 CGCAGCTCTTTGTGAGCATCCTATTATATAATCAGTTATGATCCTGCATATATTGCAAACACAAA
* *
80148887 CACAGCTTTTTGTGAGCATCCT
1 CGCAGCTCTTTGTGAGCATCCT
80148909 GATATGGCTC
Statistics
Matches: 73, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
65 72 0.99
66 1 0.01
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (65 bp):
CGCAGCTCTTTGTGAGCATCCTATTATATAATCAGTTATGATCCTGCATATATTGCAAACACAAA
Found at i:80149062 original size:26 final size:26
Alignment explanation
Indices: 80148957--80149064 Score: 144
Period size: 26 Copynumber: 4.2 Consensus size: 26
80148947 GGAGCTCCTA
*
80148957 ATTAAAAGCTCTTCGTGAGCTTTCTA
1 ATTAAAAGCTCTTCGTGAGCTTTCTG
*
80148983 ATGAAAAGCTCTTCGTGAGCTTTCTG
1 ATTAAAAGCTCTTCGTGAGCTTTCTG
* *
80149009 ATGAAAAGCTCTTCATGAGCTTTCTG
1 ATTAAAAGCTCTTCGTGAGCTTTCTG
* * * *
80149035 ATTAAAAGTTCTTTGTGAACTTTTTG
1 ATTAAAAGCTCTTCGTGAGCTTTCTG
80149061 ATTA
1 ATTA
80149065 CCCAGATAAG
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.27, C:0.16, G:0.18, T:0.40
Consensus pattern (26 bp):
ATTAAAAGCTCTTCGTGAGCTTTCTG
Found at i:80150839 original size:27 final size:27
Alignment explanation
Indices: 80150834--80150990 Score: 224
Period size: 27 Copynumber: 5.8 Consensus size: 27
80150824 ATTACCAAAG
*
80150834 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* *
80150861 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACCATTT
80150888 TACCCTCGATTTATAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
*
80150915 TACCCTCGATTTGTAGAATTACCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
80150942 TACCCTCGATTTACAAAATTATCATTT
1 TACCCTCGATTTATAGAATTACCATTT
* * *
80150969 TACCCCCGATTTACAAAATTAC
1 TACCCTCGATTTATAGAATTAC
80150991 TGACATACCC
Statistics
Matches: 118, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 118 1.00
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACCATTT
Found at i:80150871 original size:54 final size:54
Alignment explanation
Indices: 80150809--80151054 Score: 215
Period size: 54 Copynumber: 4.6 Consensus size: 54
80150799 TACTGAAATG
* *
80150809 CCCTCAATTTGTAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATTTTA
1 CCCTCAATTTGTAAAATTACCAAATTACCCTCGATTTACAAAATTACCATTTTA
* * *** * *
80150863 CCCTCAATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCAATTTGTAAAATTACCAAATTACCCTCGATTTACAAAATTACCATTTTA
* * ** *
80150917 CCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTACAAAATTATCATTTTA
1 CCCTCAATTTGTAAAATTACCAAATTACCCTCGATTTACAAAATTACCATTTTA
* * ** * * * * ***
80150971 CCCCCGATTTACAAAATTACTGACA-TACCCTTGGTTTACAAAATTACCAAAATA
1 CCCTCAATTTGTAAAATTAC-CAAATTACCCTCGATTTACAAAATTACCATTTTA
* ** *
80151025 CCCTCAGTCAGTAAAATTACCAAAATACCC
1 CCCTCAATTTGTAAAATTACCAAATTACCC
80151055 CTAGTTTGTA
Statistics
Matches: 155, Mismatches: 35, Indels: 4
0.80 0.18 0.02
Matches are distributed among these distances:
53 2 0.01
54 152 0.98
55 1 0.01
ACGTcount: A:0.34, C:0.25, G:0.07, T:0.34
Consensus pattern (54 bp):
CCCTCAATTTGTAAAATTACCAAATTACCCTCGATTTACAAAATTACCATTTTA
Found at i:80150999 original size:27 final size:28
Alignment explanation
Indices: 80150834--80151017 Score: 110
Period size: 27 Copynumber: 6.8 Consensus size: 28
80150824 ATTACCAAAG
* **
80150834 TACCCTCGATTTACAGAATTAC-CATTT
1 TACCCTCGATTTACAAAATTACTCATCA
* * * * **
80150861 TACCCTCAATTTATAGAATTAC-CGTTT
1 TACCCTCGATTTACAAAATTACTCATCA
* * **
80150888 TACCCTCGATTTATAGAATTAC-CATTT
1 TACCCTCGATTTACAAAATTACTCATCA
** * **
80150915 TACCCTCGATTTGTAGAATTAC-CATTT
1 TACCCTCGATTTACAAAATTACTCATCA
**
80150942 TACCCTCGATTTACAAAATTA-TCATTT
1 TACCCTCGATTTACAAAATTACTCATCA
* *
80150969 TACCCCCGATTTACAAAATTACTGA-CA
1 TACCCTCGATTTACAAAATTACTCATCA
* *
80150996 TACCCTTGGTTTACAAAATTAC
1 TACCCTCGATTTACAAAATTAC
80151018 CAAAATACCC
Statistics
Matches: 139, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
27 137 0.99
28 2 0.01
ACGTcount: A:0.31, C:0.24, G:0.08, T:0.38
Consensus pattern (28 bp):
TACCCTCGATTTACAAAATTACTCATCA
Found at i:80151000 original size:81 final size:81
Alignment explanation
Indices: 80150821--80151019 Score: 213
Period size: 81 Copynumber: 2.5 Consensus size: 81
80150811 CTCAATTTGT
* * * *
80150821 AAAATTACCA-AAGTACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTATAGAATTACCG
1 AAAATTACCATCA-TACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACCA
* *
80150885 TTTTACCCTCGATTTAT
65 TTTTACCCCCGATTTAC
* ** ** * *
80150902 AGAATTACCATTTTACCCTCGATTTGTAGAATTACCATTTTACCCTCGATTTACAAAATTATCAT
1 AAAATTACCATCATACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACCAT
80150967 TTTACCCCCGATTTAC
66 TTTACCCCCGATTTAC
* * * *
80150983 AAAATTACTGA-CATACCCTTGGTTTACAAAATTACCA
1 AAAATTAC-CATCATACCCTCGATTTACAGAATTACCA
80151020 AAATACCCTC
Statistics
Matches: 95, Mismatches: 21, Indels: 4
0.79 0.17 0.03
Matches are distributed among these distances:
81 94 0.99
82 1 0.01
ACGTcount: A:0.33, C:0.24, G:0.08, T:0.36
Consensus pattern (81 bp):
AAAATTACCATCATACCCTCGATTTACAGAATTACCATTTTACCCTCAATTTACAAAATTACCAT
TTTACCCCCGATTTAC
Found at i:80151121 original size:53 final size:54
Alignment explanation
Indices: 80151010--80151164 Score: 215
Period size: 53 Copynumber: 2.9 Consensus size: 54
80151000 CTTGGTTTAC
** * *
80151010 AAAATTACCAAAATA-CCCTCAGTCAGTAAAATTACCAAAATACCCCTAGTTTGT
1 AAAATTACCAAAATACCCCT-AGTGTGTAAAATTACCAAAATACCCCTGGCTTGT
* *
80151064 AAAATTACTAAAATACCCCTGGTGTGTAAAA-TACCAAAATACCCCTGGCTTGT
1 AAAATTACCAAAATACCCCTAGTGTGTAAAATTACCAAAATACCCCTGGCTTGT
* *
80151117 AAAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTG
1 AAAATTACCAAAATACCCCTAGTGTGTAAAATTACCAAAATACCCCTG
80151165 TAAGGTAGAA
Statistics
Matches: 89, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
53 48 0.54
54 37 0.42
55 4 0.04
ACGTcount: A:0.41, C:0.23, G:0.09, T:0.26
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAGTGTGTAAAATTACCAAAATACCCCTGGCTTGT
Found at i:80151176 original size:27 final size:27
Alignment explanation
Indices: 80151012--80151415 Score: 325
Period size: 27 Copynumber: 15.0 Consensus size: 27
80151002 TGGTTTACAA
* *
80151012 AATTACCAAAATACCCTCAGTCA--GTAA
1 AATTACCAAAATACCC-CTGT-AGGGTAG
** *
80151039 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCAAAATACCCCT-GTAGGGTAG
* *
80151066 AATTACTAAAATACCCCTGGT-GTGTA-
1 AATTACCAAAATACCCCT-GTAGGGTAG
* **** *
80151092 AAATACCAAAATACCCCTGGCTTGTAA
1 AATTACCAAAATACCCCTGTAGGGTAG
** *
80151119 AATTACCAAAATACCCCTAGT-TTGTAA
1 AATTACCAAAATACCCCT-GTAGGGTAG
* *
80151146 AATTACTAAAATACCCCTGTAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
80151173 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * * * *
80151200 AATTACTAAAATTCCCCTATAAGGCAG
1 AATTACCAAAATACCCCTGTAGGGTAG
*
80151227 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** * *
80151254 AATTACTGAAATACCCTTGTAGAGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
** * * *
80151281 AATTACTGAAATAACCCTATAAGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
80151308 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
80151335 AATTACTAAAATACCCCTGTAGGGGAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* * *
80151362 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
* *
80151389 AAATACTAAAATACCCCTGTAGGGTAG
1 AATTACCAAAATACCCCTGTAGGGTAG
80151416 GACTATCGAT
Statistics
Matches: 314, Mismatches: 56, Indels: 14
0.82 0.15 0.04
Matches are distributed among these distances:
25 1 0.00
26 23 0.07
27 289 0.92
28 1 0.00
ACGTcount: A:0.39, C:0.20, G:0.15, T:0.26
Consensus pattern (27 bp):
AATTACCAAAATACCCCTGTAGGGTAG
Found at i:80153850 original size:27 final size:27
Alignment explanation
Indices: 80153818--80154197 Score: 158
Period size: 27 Copynumber: 14.1 Consensus size: 27
80153808 TTAGTTTACC
* *
80153818 AAATTACTAAAATGCCCTCAATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* **
80153845 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* *** * * *
80153872 GAATTACCATGTTACTCTCGATTTACA
1 AAATTACCAAAATACCCTCAATTTATA
* **** *
80153899 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* *** * *
80153926 GAATTACCATTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCAATTTATA
* *****
80153953 GAATTACTGTTTTACCCTCAATTTATA
1 AAATTACCAAAATACCCTCAATTTATA
* **** *
80153980 GAA-TACCGTTTTACCCTCAATTTACA
1 AAATTACCAAAATACCCTCAATTTATA
* * * * *
80154006 AAATTACTAAAATGCCCTTAGTTTACA
1 AAATTACCAAAATACCCTCAATTTATA
* *
80154033 AAATTACCAAAATACCCTCGA-TCAGTA
1 AAATTACCAAAATACCCTCAATTTA-TA
*** *
80154060 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCAATTTATA
* *
80154087 AAATTACTAAAATACCC-CTAGTTTA-A
1 AAATTACCAAAATACCCTC-AATTTATA
* ** *
80154113 AAATTACCCAAATACCCTCAGCTTGTA
1 AAATTACCAAAATACCCTCAATTTATA
* *
80154140 AAATTACCAAAATACCC-CTAATTTGTG
1 AAATTACCAAAATACCCTC-AATTTATA
* * * * *
80154167 AAATTATCGAAATACTCTCGATTTGTA
1 AAATTACCAAAATACCCTCAATTTATA
80154194 AAAT
1 AAAT
80154198 ATTGAAATTC
Statistics
Matches: 284, Mismatches: 61, Indels: 16
0.79 0.17 0.04
Matches are distributed among these distances:
26 46 0.16
27 236 0.83
28 2 0.01
ACGTcount: A:0.37, C:0.21, G:0.08, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTTATA
Found at i:80153904 original size:54 final size:54
Alignment explanation
Indices: 80153832--80154012 Score: 175
Period size: 54 Copynumber: 3.4 Consensus size: 54
80153822 TACTAAAATG
* * * *
80153832 CCCTCAATTTATAAAATTACCAAAGTACCCTTGATTTATAGAATTACCATGTTA
1 CCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCATGTTA
* **** *
80153886 CTCTCGATTTACAGAATTACCGTTTTACCCTCGATTTATAGAATTACCATTTTA
1 CCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCATGTTA
***** * * *
80153940 CCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTATAGAA-TACCGTTTTA
1 CCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCATGTTA
* *
80153993 CCCTCAATTTACAAAATTAC
1 CCCTCGATTTACAGAATTAC
80154013 TAAAATGCCC
Statistics
Matches: 111, Mismatches: 16, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
53 27 0.24
54 84 0.76
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (54 bp):
CCCTCGATTTACAGAATTACCAAAGTACCCTCGATTTATAGAATTACCATGTTA
Found at i:80153949 original size:81 final size:80
Alignment explanation
Indices: 80153832--80154012 Score: 227
Period size: 81 Copynumber: 2.2 Consensus size: 80
80153822 TACTAAAATG
* * * *
80153832 CCCTCAATTTATAAAATTACCAAAGTACCCTTGATTTATAGAATTACCATGTTACTCTCGATTTA
1 CCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATGTTACCCTCAATTTA
80153897 CAGAATTACCGTTTTA
66 CAGAA-TACCGTTTTA
* * *** ** *
80153913 CCCTCGATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCAATTTA
1 CCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATGTTACCCTCAATTTA
*
80153978 TAGAATACCGTTTTA
66 CAGAATACCGTTTTA
*
80153993 CCCTCAATTTACAAAATTAC
1 CCCTCAATTTATAAAATTAC
80154013 TAAAATGCCC
Statistics
Matches: 84, Mismatches: 16, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
80 27 0.32
81 57 0.68
ACGTcount: A:0.32, C:0.23, G:0.08, T:0.38
Consensus pattern (80 bp):
CCCTCAATTTATAAAATTACCAAAGTACCCTCGATTTACAGAATTACCATGTTACCCTCAATTTA
CAGAATACCGTTTTA
Found at i:80154013 original size:53 final size:54
Alignment explanation
Indices: 80153865--80154013 Score: 228
Period size: 54 Copynumber: 2.8 Consensus size: 54
80153855 AGTACCCTTG
* * * *
80153865 ATTTATAGAATTACCATGTTACTCTCGATTTACAGAATTACCGTTTTACCCTCG
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCA
80153919 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCA
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCA
* * *
80153973 ATTTATAGAA-TACCGTTTTACCCTCAATTTACAAAATTACT
1 ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACT
80154014 AAAATGCCCT
Statistics
Matches: 88, Mismatches: 7, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
53 28 0.32
54 60 0.68
ACGTcount: A:0.31, C:0.21, G:0.08, T:0.40
Consensus pattern (54 bp):
ATTTATAGAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCA
Found at i:80154139 original size:53 final size:53
Alignment explanation
Indices: 80154000--80154159 Score: 160
Period size: 53 Copynumber: 3.0 Consensus size: 53
80153990 TTACCCTCAA
* * * * ** *
80154000 TTTACAAAATTACTAAAATGCCCTTAGTTTACAAAATTACCAAAATA-CCCTCG
1 TTTA-AAAATTACCAAAATACCCTCAGCTTGTAAAATTACCAAAATACCCCTAG
* * ** * *
80154053 ATCAGTAAAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCCTAG
1 TTTA--AAAATTACCAAAATACCCTCAGCTTGTAAAATTACCAAAATACCCCTAG
*
80154108 TTTAAAAATTACCCAAATACCCTCAGCTTGTAAAATTACCAAAATACCCCTA
1 TTTAAAAATTACCAAAATACCCTCAGCTTGTAAAATTACCAAAATACCCCTA
80154160 ATTTGTGAAA
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
53 45 0.51
54 36 0.41
55 7 0.08
ACGTcount: A:0.42, C:0.23, G:0.06, T:0.29
Consensus pattern (53 bp):
TTTAAAAATTACCAAAATACCCTCAGCTTGTAAAATTACCAAAATACCCCTAG
Found at i:80154181 original size:80 final size:81
Alignment explanation
Indices: 80154005--80154172 Score: 232
Period size: 80 Copynumber: 2.1 Consensus size: 81
80153995 CTCAATTTAC
* *
80154005 AAAATTACTAAAATGCCCTTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
* **
80154070 AATACCCTTGGTTTGT
66 AATACCCCTAATTTGT
* * *
80154086 AAAATTACTAAAATACCCCTAGTTTA-AAAATTACCCAAATACCCTC-AGCTTGTAAAATTACCA
1 AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGATC-AGTAAAATTACCA
80154149 AAATACCCCTAATTTGT
65 AAATACCCCTAATTTGT
*
80154166 GAAATTA
1 AAAATTA
80154173 TCGAAATACT
Statistics
Matches: 77, Mismatches: 9, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
79 2 0.03
80 51 0.66
81 24 0.31
ACGTcount: A:0.42, C:0.21, G:0.07, T:0.29
Consensus pattern (81 bp):
AAAATTACTAAAATACCCCTAGTTTACAAAATTACCAAAATACCCTCGATCAGTAAAATTACCAA
AATACCCCTAATTTGT
Found at i:80154195 original size:54 final size:54
Alignment explanation
Indices: 80154032--80154197 Score: 167
Period size: 53 Copynumber: 3.1 Consensus size: 54
80154022 CTTAGTTTAC
* ** * *
80154032 AAAATTACCAAAATA-CCCTCGATCAGTAAAATTACCAAAATACCCTTGGTTTGT
1 AAAATTACCAAAATACCCCT-AATTTGTAAAATTACCAAAATACCCTCGATTTGT
* * * * *
80154086 AAAATTACTAAAATACCCCTAGTTT-AAAAATTACCCAAATACCCTC-AGCTTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCGA-TTTGT
* * * *
80154139 AAAATTACCAAAATACCCCTAATTTGTGAAATTATCGAAATACTCTCGATTTGT
1 AAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCGATTTGT
80154193 AAAAT
1 AAAAT
80154198 ATTGAAATTC
Statistics
Matches: 90, Mismatches: 18, Indels: 8
0.78 0.16 0.07
Matches are distributed among these distances:
53 45 0.50
54 40 0.44
55 5 0.06
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.30
Consensus pattern (54 bp):
AAAATTACCAAAATACCCCTAATTTGTAAAATTACCAAAATACCCTCGATTTGT
Found at i:80154243 original size:27 final size:27
Alignment explanation
Indices: 80154201--80154497 Score: 380
Period size: 27 Copynumber: 11.0 Consensus size: 27
80154191 GTAAAATATT
*
80154201 GAAATTCCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
80154228 GAAATACCCCTATAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
80154255 GAAATACCTCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
80154282 GAAATAACCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
80154309 GAAATACTCTTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
80154336 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
80154363 AAAATACCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
80154390 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
80154417 GAAATACCCTTGTAGGGTAAAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
80154444 GAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
80154471 GAGATACCCTTGT-GAGGTAAAATTACC
1 GAAATACCCCTGTAG-GGTAGAATTACC
80154498 ATTTTGCCCT
Statistics
Matches: 231, Mismatches: 38, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
26 1 0.00
27 230 1.00
ACGTcount: A:0.36, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:80154737 original size:25 final size:24
Alignment explanation
Indices: 80154699--80154781 Score: 96
Period size: 25 Copynumber: 3.4 Consensus size: 24
80154689 AGGAAATGCT
* *
80154699 AAAAGGGCTATGCCCCAGTTTATC
1 AAAAAGGCTTTGCCCCAGTTTATC
*
80154723 GAAAAGAGCTTTGCCCCAGTTTATC
1 AAAAAG-GCTTTGCCCCAGTTTATC
*
80154748 AAAAACGGCTTTGCCCCAG-TTATT
1 AAAAA-GGCTTTGCCCCAGTTTATC
80154772 AAAAGAGGCT
1 AAAA-AGGCT
80154782 AAGCCTCCAG
Statistics
Matches: 51, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
24 16 0.31
25 34 0.67
26 1 0.02
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.25
Consensus pattern (24 bp):
AAAAAGGCTTTGCCCCAGTTTATC
Found at i:80154781 original size:24 final size:25
Alignment explanation
Indices: 80154698--80154793 Score: 92
Period size: 25 Copynumber: 3.9 Consensus size: 25
80154688 GAGGAAATGC
80154698 TAAAAG-GGCTATGCCCCAGTTTAT
1 TAAAAGAGGCTATGCCCCAGTTTAT
* *
80154722 CGAAAAGA-GCTTTGCCCCAGTTTAT
1 -TAAAAGAGGCTATGCCCCAGTTTAT
* *
80154747 CAAAA-ACGGCTTTGCCCCAG-TTAT
1 TAAAAGA-GGCTATGCCCCAGTTTAT
*
80154771 TAAAAGAGGCTAAGCCTCCAGTT
1 TAAAAGAGGCTATGCC-CCAGTT
80154794 ATATGATAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 11
0.78 0.08 0.14
Matches are distributed among these distances:
23 1 0.02
24 19 0.32
25 38 0.64
26 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (25 bp):
TAAAAGAGGCTATGCCCCAGTTTAT
Found at i:80154792 original size:50 final size:50
Alignment explanation
Indices: 80154699--80154793 Score: 113
Period size: 50 Copynumber: 1.9 Consensus size: 50
80154689 AGGAAATGCT
* **
80154699 AAAAGGGCTATGCCCCAGTTTATCGAAAAGAGCTTTGCCCCAGTTTATCA
1 AAAACGGCTATGCCCCAGTTTATCGAAAAGAGCTAAGCCCCAGTTTATCA
* *
80154749 AAAACGGCTTTGCCCCAG-TTAT-TAAAAGAGGCTAAGCCTCCAGTT
1 AAAACGGCTATGCCCCAGTTTATCGAAAAGA-GCTAAGCC-CCAGTT
80154794 ATATGATAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 4
0.81 0.11 0.09
Matches are distributed among these distances:
48 6 0.16
49 10 0.26
50 22 0.58
ACGTcount: A:0.31, C:0.24, G:0.20, T:0.25
Consensus pattern (50 bp):
AAAACGGCTATGCCCCAGTTTATCGAAAAGAGCTAAGCCCCAGTTTATCA
Found at i:80158739 original size:39 final size:39
Alignment explanation
Indices: 80158685--80158902 Score: 303
Period size: 39 Copynumber: 5.5 Consensus size: 39
80158675 TAATGGAGAA
80158685 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
80158724 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * * **
80158763 TTATATTCAGGCTAAGTCCTGCAGGTTTTCGTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
*
80158802 TTATATCCGGGCTAAGTCCCGAAGGCATTCTTGCTGGTG
1 TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
* * * *
80158841 TTATATCTGGGCTAAAGTCCCGCAGGC-TTTGTGCTGGTA
1 TTATATCCGGGCT-AAGTCCCGAAGGCATTCGTGCTGGTG
80158880 TTATATCCGGGCTTAAAGTCCCG
1 TTATATCCGGGC-T-AAGTCCCG
80158903 CATGCTTTGT
Statistics
Matches: 158, Mismatches: 19, Indels: 3
0.88 0.11 0.02
Matches are distributed among these distances:
39 136 0.86
40 22 0.14
ACGTcount: A:0.18, C:0.22, G:0.28, T:0.32
Consensus pattern (39 bp):
TTATATCCGGGCTAAGTCCCGAAGGCATTCGTGCTGGTG
Found at i:80172705 original size:11 final size:11
Alignment explanation
Indices: 80172689--80172713 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
80172679 AAAATTATAA
80172689 AAACTAATATT
1 AAACTAATATT
80172700 AAACTAATATT
1 AAACTAATATT
80172711 AAA
1 AAA
80172714 GAAAAATGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.60, C:0.08, G:0.00, T:0.32
Consensus pattern (11 bp):
AAACTAATATT
Found at i:80174656 original size:13 final size:13
Alignment explanation
Indices: 80174638--80174662 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80174628 TGTTTAGGCA
80174638 CTCGGCCGTGTCG
1 CTCGGCCGTGTCG
80174651 CTCGGCCGTGTC
1 CTCGGCCGTGTC
80174663 TTACTTTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.40, G:0.36, T:0.24
Consensus pattern (13 bp):
CTCGGCCGTGTCG
Found at i:80193239 original size:40 final size:40
Alignment explanation
Indices: 80193207--80193470 Score: 402
Period size: 40 Copynumber: 6.6 Consensus size: 40
80193197 CCAGCATGAT
* * *
80193207 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
80193247 TGCTCTTCGGAACTTAGCACGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
80193287 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
80193327 TGCTCTTTGGGATTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
80193367 TGCTCTTCGGAACTTAGTCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
80193407 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
80193447 TGCTCTTCGGGACTTAGCCCGGAT
1 TGCTCTTCGGGACTTAGCCCGGAT
80193471 CATCGTCGAG
Statistics
Matches: 203, Mismatches: 21, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 203 1.00
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:80193957 original size:79 final size:81
Alignment explanation
Indices: 80193848--80194030 Score: 205
Period size: 79 Copynumber: 2.3 Consensus size: 81
80193838 TACTCGTTCA
* * **
80193848 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCCGG
* *
80193911 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
80193928 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCACACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
* *
80193991 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
80194007 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
80194031 CATCATTCGA
Statistics
Matches: 87, Mismatches: 12, Indels: 8
0.81 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.64
80 28 0.32
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:80194030 original size:40 final size:41
Alignment explanation
Indices: 80193846--80194030 Score: 204
Period size: 40 Copynumber: 4.6 Consensus size: 41
80193836 GCTACTCGTT
* *
80193846 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTT-GCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
80193886 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAAC-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
* * *
80193926 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCA-CA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTTAGCA
* * *
80193965 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAACTTAGCA
80194006 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
80194031 CATCATTCGA
Statistics
Matches: 120, Mismatches: 17, Indels: 16
0.78 0.11 0.10
Matches are distributed among these distances:
38 2 0.02
39 29 0.24
40 79 0.66
41 10 0.08
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTTAGCA
Found at i:80203494 original size:75 final size:75
Alignment explanation
Indices: 80203371--80203512 Score: 232
Period size: 75 Copynumber: 1.9 Consensus size: 75
80203361 TTATGTAATC
* *
80203371 GAACCTTGATGAATCTATTTTCATAGGAAAGTAACAGAAAGGATATATGAATAGTATATTATGAG
1 GAACCTTGATGAATCTATTTTCATAGGAAAGTAACAGAAACGATATATGAATAGTATATTAAGAG
80203436 ATGTTAAAGT
66 ATGTTAAAGT
* *
80203446 GAACCTTGATGACTCTATTTTCATAGGAAAGTAAC-GAAACGATCATATGAATAGTATGTTAAGA
1 GAACCTTGATGAATCTATTTTCATAGGAAAGTAACAGAAACGAT-ATATGAATAGTATATTAAGA
80203510 GAT
65 GAT
80203513 ATTTAAGTTT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
74 7 0.11
75 55 0.89
ACGTcount: A:0.40, C:0.09, G:0.20, T:0.31
Consensus pattern (75 bp):
GAACCTTGATGAATCTATTTTCATAGGAAAGTAACAGAAACGATATATGAATAGTATATTAAGAG
ATGTTAAAGT
Found at i:80204658 original size:38 final size:38
Alignment explanation
Indices: 80204594--80204668 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 38
80204584 AATCCGAGTT
*
80204594 TAAAGACCCGCTGACTATATGAAGAGATTATGTCCGGG
1 TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
* *
80204632 TAAAGACCCGATGGCTATGT-ACAGAGATTATGTCCGG
1 TAAAGACCCGATGACTATATGA-AGAGATTATGTCCGG
80204669 ATTAAAATTC
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 1 0.03
38 32 0.97
ACGTcount: A:0.31, C:0.19, G:0.27, T:0.24
Consensus pattern (38 bp):
TAAAGACCCGATGACTATATGAAGAGATTATGTCCGGG
Found at i:80204786 original size:40 final size:40
Alignment explanation
Indices: 80204722--80204949 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
80204712 AGGTCTCGAC
80204722 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* ** *
80204761 GATGTATCCAGGCTAAGTCCCGAAGAGTGTTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
80204801 GTTGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* *
80204841 GATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * ** * *
80204881 GATATATCCGTGCTAAACCCCGAAGAGCATTCGTGTTGGT
1 GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
* * *
80204921 GTTATATCCGGGCTAGGTCCCGAAGAGCA
1 GATGTATCCGGGCTAAGTCCCGAAGAGCA
80204950 ATCATGCTGG
Statistics
Matches: 163, Mismatches: 25, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
39 4 0.02
40 159 0.98
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
GATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGT
Found at i:80204941 original size:120 final size:119
Alignment explanation
Indices: 80204722--80204962 Score: 331
Period size: 120 Copynumber: 2.0 Consensus size: 119
80204712 AGGTCTCGAC
* **
80204722 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCAGGCTAAGTCCCGAAGA
1 GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAACCCCGAAGA
** * *
80204787 GTGTTCATGCTAGTGTTGTATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGT
66 GCATTCATGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGT
* *
80204841 GATGTATCCGGGCTAAGTTCTGAAGAGCATTCGTGCTAGTGATATATCC-GTGCTAAACCCCGAA
1 GATG-ATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAG-GCTAAACCCCGAA
* * * * *
80204905 GAGCATTCGTGTTGGTGTTATATCCGGGCTAGGTCCCGAAGAGCAATCATGCTGGT
64 GAGCATTCATGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGT
80204961 GA
1 GA
80204963 CGTGTATTCA
Statistics
Matches: 106, Mismatches: 14, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
119 5 0.05
120 101 0.95
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (119 bp):
GATGATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATATCCAGGCTAAACCCCGAAGA
GCATTCATGCTAGTGTTATATCCGGGCTAAGTCCCGAAGAGCAATCATGCTAGT
Found at i:80209220 original size:47 final size:47
Alignment explanation
Indices: 80209166--80209265 Score: 128
Period size: 47 Copynumber: 2.1 Consensus size: 47
80209156 TTAGGATTGT
* ** * *
80209166 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATATGAACATGCATATATGAGATAAAGCCGAATGGCCA
* * *
80209213 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATATGAACATGCATATATGAGATAAAGCCGAATGGCCA
80209260 ATGTGA
1 ATGTGA
80209266 AATATGTATG
Statistics
Matches: 45, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.35, C:0.09, G:0.28, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATATGAACATGCATATATGAGATAAAGCCGAATGGCCA
Found at i:80209580 original size:37 final size:37
Alignment explanation
Indices: 80209472--80209580 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
80209462 GGAAATATAT
*
80209472 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
80209509 TCCGGGTAAGACCTGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
80209546 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
80209581 CGTCTGAGCT
Statistics
Matches: 67, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.23, C:0.18, G:0.31, T:0.28
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:80210834 original size:58 final size:58
Alignment explanation
Indices: 80210761--80210872 Score: 170
Period size: 58 Copynumber: 1.9 Consensus size: 58
80210751 TCAGGCTTGA
*
80210761 CCACGGCCAAGGCACACGGGCGTGTCTTGTAACCGTGTGAGCAAGTCAGTAGCTATGC
1 CCACGGCCAAAGCACACGGGCGTGTCTTGTAACCGTGTGAGCAAGTCAGTAGCTATGC
* * * * *
80210819 CCACGGCCAAAGCACATGGGTGTGTGTTGTAGCCGTGTGGGCAAGTCAGTAGCT
1 CCACGGCCAAAGCACACGGGCGTGTCTTGTAACCGTGTGAGCAAGTCAGTAGCT
80210873 GTGCGCTGTT
Statistics
Matches: 48, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
58 48 1.00
ACGTcount: A:0.21, C:0.25, G:0.33, T:0.21
Consensus pattern (58 bp):
CCACGGCCAAAGCACACGGGCGTGTCTTGTAACCGTGTGAGCAAGTCAGTAGCTATGC
Found at i:80217073 original size:40 final size:40
Alignment explanation
Indices: 80216750--80217061 Score: 507
Period size: 40 Copynumber: 7.8 Consensus size: 40
80216740 GAGAACTGAG
*
80216750 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* *
80216790 AGTGATATATCCAGGTTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
80216830 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
80216870 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
80216910 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
80216950 AGTGATATATCCGGACTAAGTTCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * *
80216990 AGAGATATATCCGTGCTAAACCCCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
* * **
80217030 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAATCCCGAAGAGCA
80217062 ATCATGCTGG
Statistics
Matches: 251, Mismatches: 21, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 251 1.00
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAATCCCGAAGAGCATTCGTGCT
Found at i:80220389 original size:14 final size:14
Alignment explanation
Indices: 80220370--80220402 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
80220360 TAGTTGATTC
80220370 TTATTAATATGTTG
1 TTATTAATATGTTG
80220384 TTATTAATATGTTG
1 TTATTAATATGTTG
80220398 TTATT
1 TTATT
80220403 GAATGATTGG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.27, C:0.00, G:0.12, T:0.61
Consensus pattern (14 bp):
TTATTAATATGTTG
Found at i:80226757 original size:25 final size:25
Alignment explanation
Indices: 80226729--80226798 Score: 104
Period size: 25 Copynumber: 2.8 Consensus size: 25
80226719 CTCTTTTAAT
*
80226729 AACTGGGGCAAAGCCCTTTTTGATA
1 AACTGGGGCAAAGCCCTTTTCGATA
* *
80226754 AACTGGGACAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
80226779 AACTGGGGCATAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
80226799 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 40 1.00
ACGTcount: A:0.26, C:0.23, G:0.24, T:0.27
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:80226850 original size:16 final size:16
Alignment explanation
Indices: 80226829--80226859 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80226819 AACCCAACCC
*
80226829 ATGCAACATGTCATGT
1 ATGCAAAATGTCATGT
80226845 ATGCAAAATGTCATG
1 ATGCAAAATGTCATG
80226860 CCCATATTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.16, G:0.19, T:0.29
Consensus pattern (16 bp):
ATGCAAAATGTCATGT
Found at i:80227642 original size:27 final size:26
Alignment explanation
Indices: 80227607--80227684 Score: 86
Period size: 27 Copynumber: 2.9 Consensus size: 26
80227597 TGGCATATTC
80227607 GTCATTTTATCATACAGGGGTATTACG
1 GTCATTTTA-CATACAGGGGTATTACG
* *
80227634 GTCACTTTACCTTACAGGGGCT-TTACG
1 GTCATTTTA-CATACAGGGG-TATTACG
*
80227661 GTCATTTTACATATTAGGGGTATT
1 GTCATTTTACATA-CAGGGGTATT
80227685 TTAGTCATTT
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 4 0.10
27 37 0.88
28 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.22, T:0.38
Consensus pattern (26 bp):
GTCATTTTACATACAGGGGTATTACG
Done.