Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 235 of 297
Found at i:80227795 original size:29 final size:28
Alignment explanation
Indices: 80227746--80227832 Score: 88
Period size: 28 Copynumber: 3.1 Consensus size: 28
80227736 ATTTCAGTAA
* * *
80227746 TTTTATAAACCAATGGTATTTTTATAAT
1 TTTTGTAAATCAAGGGTATTTTTATAAT
*
80227774 TTTTAG-AAAGTCAAGGGTATTTCTATAA-
1 TTTT-GTAAA-TCAAGGGTATTTTTATAAT
**
80227802 TTTTGTAAATCAAGGGTATTTTGGTAAT
1 TTTTGTAAATCAAGGGTATTTTTATAAT
80227830 TTT
1 TTT
80227833 ACAAATTGAG
Statistics
Matches: 48, Mismatches: 7, Indels: 8
0.76 0.11 0.13
Matches are distributed among these distances:
27 16 0.33
28 17 0.35
29 15 0.31
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (28 bp):
TTTTGTAAATCAAGGGTATTTTTATAAT
Found at i:80227838 original size:27 final size:27
Alignment explanation
Indices: 80227702--80227910 Score: 129
Period size: 27 Copynumber: 7.7 Consensus size: 27
80227692 TTTCATCCTA
* * * *
80227702 CAAGGGTGTTTTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** * *
80227729 CAAAGGTATTTCAGTAATTTTATAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
* ** *
80227756 CAATGGTATTTTTATAATTTTTAGAAAGT
1 CAAGGGTATTTTGGTAA-TTTTACAAA-T
* **
80227785 CAAGGGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
80227812 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
** * * *
80227839 TGA-GGTATTTCGGTAATGTCACAAA-
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
80227864 CTAGTGGTATTTCGGTAATTTTACAAA-
1 CAAG-GGTATTTTGGTAATTTTACAAAT
*
80227891 CTAGGGGTATTTTGGTAATT
1 C-AAGGGTATTTTGGTAATT
80227911 CTATCCTACA
Statistics
Matches: 144, Mismatches: 31, Indels: 14
0.76 0.16 0.07
Matches are distributed among these distances:
25 1 0.01
26 20 0.14
27 92 0.64
28 16 0.11
29 14 0.10
30 1 0.01
ACGTcount: A:0.33, C:0.09, G:0.19, T:0.40
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:80227927 original size:54 final size:53
Alignment explanation
Indices: 80227815--80227943 Score: 136
Period size: 54 Copynumber: 2.4 Consensus size: 53
80227805 TGTAAATCAA
* *
80227815 GGGTATTTTGGTAATTTTACAAATTGAGGTATTTCGGTAATGTCACAAACTAG
1 GGGTATTTCGGTAATTTTACAAATAGAGGTATTTCGGTAATGTCACAAACTAG
* * * **
80227868 TGGTATTTCGGTAATTTTACAAACTAGGGGTATTTTGGTAAT-TCTATCCTAC-AG
1 GGGTATTTCGGTAATTTTACAAA-TAGAGGTATTTCGGTAATGTC-A-CAAACTAG
* *
80227922 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCGGTAATTTTACAA
80227944 TCGAGGGTAA
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
53 23 0.37
54 37 0.59
55 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.39
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACAAATAGAGGTATTTCGGTAATGTCACAAACTAG
Found at i:80227950 original size:27 final size:27
Alignment explanation
Indices: 80227815--80227943 Score: 120
Period size: 27 Copynumber: 4.8 Consensus size: 27
80227805 TGTAAATCAA
* * *
80227815 GGGTATTTTGGTAATTTTACAAA-TTG
1 GGGTATTTCGGTAATTTCACAAACTAG
* *
80227841 AGGTATTTCGGTAATGTCACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACTAG
* *
80227868 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTCGGTAATTTCACAAACTAG
* **
80227895 GGGTATTTTGGTAA-TTCTATCCTAC-AG
1 GGGTATTTCGGTAATTTC-A-CAAACTAG
*
80227922 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCGGTAATTTCACAA
80227944 TCGAGGGTAA
Statistics
Matches: 82, Mismatches: 17, Indels: 8
0.77 0.16 0.07
Matches are distributed among these distances:
26 22 0.27
27 54 0.66
28 6 0.07
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.39
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTCACAAACTAG
Found at i:80228057 original size:81 final size:81
Alignment explanation
Indices: 80227942--80228138 Score: 322
Period size: 81 Copynumber: 2.4 Consensus size: 81
80227932 GTAATTTCAC
* *
80227942 AATCGAGGGTAAAATGGTAATTTTGTAAACTGAGGGTAAAATGGTAATTTTGTAAATCGATGGTA
1 AATCGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCGATGGTA
80228007 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
* *
80228023 AATCGAGGGTAAAATGGTAATTCTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCGATGGTG
1 AATCGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCGATGGTA
80228088 AAACGGTAATTCTGTA
66 AAACGGTAATTCTGTA
*** *
80228104 AATCGAGGGTACTTTGGTAATTTTACAAATTGAGG
1 AATCGAGGGTAAAATGGTAATTTTATAAATTGAGG
80228139 ACATTTTAGT
Statistics
Matches: 107, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
81 107 1.00
ACGTcount: A:0.36, C:0.07, G:0.25, T:0.32
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTTTATAAATTGAGGGTAAAATGGTAATTTTGTAAATCGATGGTA
AAACGGTAATTCTGTA
Found at i:80228125 original size:27 final size:27
Alignment explanation
Indices: 80227942--80228114 Score: 240
Period size: 27 Copynumber: 6.4 Consensus size: 27
80227932 GTAATTTCAC
*
80227942 AATCGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
80227969 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTGTA
* *
80227996 AATCGATGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
*
80228023 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* *
80228050 AATTGAGGGTAAAATGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
* * *
80228077 AATCGATGGTGAAACGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTGTA
80228104 AATCGAGGGTA
1 AATCGAGGGTA
80228115 CTTTGGTAAT
Statistics
Matches: 128, Mismatches: 16, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
26 1 0.01
27 126 0.98
28 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.25, T:0.31
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTGTA
Found at i:80230599 original size:21 final size:20
Alignment explanation
Indices: 80230560--80230597 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
80230550 TTTAAAAATG
* *
80230560 CAATTTAACGGCTAAAAACT
1 CAATTTAAAGACTAAAAACT
80230580 CAATTTAAAGACTAAAAA
1 CAATTTAAAGACTAAAAA
80230598 ACATTTAAAA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.53, C:0.16, G:0.08, T:0.24
Consensus pattern (20 bp):
CAATTTAAAGACTAAAAACT
Found at i:80232086 original size:25 final size:24
Alignment explanation
Indices: 80232045--80232112 Score: 66
Period size: 25 Copynumber: 2.7 Consensus size: 24
80232035 CTTCCCAAAA
* *
80232045 TTTTAATTTTTTTAATTGATTAAT-
1 TTTTAATTTATTAAATTG-TTAATC
80232069 TTTTCAATTTATTAAATTGTTAATC
1 TTTT-AATTTATTAAATTGTTAATC
*
80232094 TTTTATTTCTAATTAAATT
1 TTTTAATT-T-ATTAAATT
80232113 TTGGGAAATT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
24 12 0.32
25 17 0.46
26 8 0.22
ACGTcount: A:0.31, C:0.04, G:0.03, T:0.62
Consensus pattern (24 bp):
TTTTAATTTATTAAATTGTTAATC
Found at i:80242816 original size:40 final size:40
Alignment explanation
Indices: 80242593--80242802 Score: 296
Period size: 40 Copynumber: 5.3 Consensus size: 40
80242583 TCCTCGTTCA
* * * ** *
80242593 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
80242632 AATGCCTTCGGGACTTAACCTGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
80242672 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
80242712 AATGCCTTCGAGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
80242752 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
80242792 AAGGCCTTCGG
1 AATGCCTTCGG
80242803 ATCTTAGTCC
Statistics
Matches: 155, Mismatches: 15, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
39 32 0.21
40 123 0.79
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:80242839 original size:80 final size:80
Alignment explanation
Indices: 80242596--80242855 Score: 249
Period size: 80 Copynumber: 3.3 Consensus size: 80
80242586 TCGTTCAAAT
* * * ** * * * * *
80242596 GCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACTTAACCTGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGAGACTTAACCCGGATATA
* *
80242660 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
* * *
80242675 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACGAATGCCTTCGAGACTTAACCCGGATTTA
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGAGACTTAACCCGGATATA
* *
80242740 ACAACTCGCACGAAT
66 ACAACTAGCACGAAA
** * **
80242755 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCG-GATCTTAGTCCGGATAT
1 GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGAGA-CTTAACCCGGATAT
*
80242819 ATGC-ACTTAGCAC-AAA
65 A-ACAAC-TAGCACGAAA
*
80242835 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAACCCGGA
80242856 CAGCATTCGA
Statistics
Matches: 157, Mismatches: 20, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
79 32 0.20
80 119 0.76
81 6 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.24
Consensus pattern (80 bp):
GCCTTCGGGACTTAACCCGGATTTAACAACTCGCACAAAGGCCTTCGAGACTTAACCCGGATATA
ACAACTAGCACGAAA
Found at i:80258648 original size:17 final size:17
Alignment explanation
Indices: 80258626--80258671 Score: 65
Period size: 17 Copynumber: 2.7 Consensus size: 17
80258616 GTTTACCTAT
*
80258626 GTGGGGCTCACATACCC
1 GTGGGGCTCACATAACC
*
80258643 GTGGGGCTCACATAATC
1 GTGGGGCTCACATAACC
*
80258660 GTGGGGCCCACA
1 GTGGGGCTCACA
80258672 CGGCCCATTT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.20, C:0.30, G:0.33, T:0.17
Consensus pattern (17 bp):
GTGGGGCTCACATAACC
Found at i:80266509 original size:91 final size:91
Alignment explanation
Indices: 80266354--80266530 Score: 300
Period size: 91 Copynumber: 1.9 Consensus size: 91
80266344 CCACACAGCT
* * *
80266354 CGTTTTGGCCCACCATGGCCCAATTCGGCCTTAGGCTAGGAGATCGCTCATGGCCGGCCGTAATG
1 CGTTTTGGCCCACCAAGGCCCAACTCGGCCTTAGGCCAGGAGATCGCTCATGGCCGGCCGTAATG
*
80266419 ATCTTACACCCACGTTTAGGCGTTCC
66 ATCTTACACCCACATTTAGGCGTTCC
*
80266445 CGTTTTGGCCCACCAAGGCCCAACTCGGCCTTAGGCCAGGAGATCGCTCATGGCCGGCCTTAATG
1 CGTTTTGGCCCACCAAGGCCCAACTCGGCCTTAGGCCAGGAGATCGCTCATGGCCGGCCGTAATG
*
80266510 ATCTTACGCCCACATTTAGGC
66 ATCTTACACCCACATTTAGGC
80266531 ATTCAGATTA
Statistics
Matches: 80, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
91 80 1.00
ACGTcount: A:0.19, C:0.33, G:0.25, T:0.24
Consensus pattern (91 bp):
CGTTTTGGCCCACCAAGGCCCAACTCGGCCTTAGGCCAGGAGATCGCTCATGGCCGGCCGTAATG
ATCTTACACCCACATTTAGGCGTTCC
Found at i:80283678 original size:5 final size:5
Alignment explanation
Indices: 80283668--80283695 Score: 56
Period size: 5 Copynumber: 5.6 Consensus size: 5
80283658 CAATTTGTAA
80283668 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
1 AAAAT AAAAT AAAAT AAAAT AAAAT AAA
80283696 GAACACATAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 23 1.00
ACGTcount: A:0.82, C:0.00, G:0.00, T:0.18
Consensus pattern (5 bp):
AAAAT
Found at i:80284244 original size:26 final size:26
Alignment explanation
Indices: 80284207--80284312 Score: 194
Period size: 26 Copynumber: 4.1 Consensus size: 26
80284197 GTACAAATTA
80284207 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
* *
80284233 ATAATGGATTAGGTAAATATTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
80284259 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
80284285 ATAATGGGTTAGGTAAATGTTCCATG
1 ATAATGGGTTAGGTAAATGTTCCATG
80284311 AT
1 AT
80284313 GGACATTTCA
Statistics
Matches: 76, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.33, C:0.08, G:0.25, T:0.35
Consensus pattern (26 bp):
ATAATGGGTTAGGTAAATGTTCCATG
Found at i:80285977 original size:54 final size:54
Alignment explanation
Indices: 80285895--80286060 Score: 244
Period size: 54 Copynumber: 3.1 Consensus size: 54
80285885 AGGAAGCGTC
* ** * *
80285895 CTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
80285949 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* **
80286003 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTTACAT-TATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGGCTCTGCCACATATATCTGTT
80286057 CTGG
1 CTGG
80286061 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 8, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
54 86 0.83
55 17 0.17
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:80286050 original size:27 final size:26
Alignment explanation
Indices: 80285895--80286060 Score: 197
Period size: 27 Copynumber: 6.2 Consensus size: 26
80285885 AGGAAGCGTC
* * *
80285895 CTGGTGGCTATGCCATAAATATCTGAT
1 CTGGTGGCTCTGCCA-CATTATCTGAT
*
80285922 CTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
80285949 CTGGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
80285976 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
80286003 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* ** *
80286031 CTGGTGACTCTGTTACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
80286057 CTGG
1 CTGG
80286061 CAGCCATGCT
Statistics
Matches: 123, Mismatches: 11, Indels: 11
0.85 0.08 0.08
Matches are distributed among these distances:
26 8 0.07
27 97 0.79
28 18 0.15
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:80286051 original size:81 final size:81
Alignment explanation
Indices: 80285895--80286060 Score: 219
Period size: 81 Copynumber: 2.0 Consensus size: 81
80285885 AGGAAGCGTC
* * *
80285895 CTGGTGGCTATGCCATAAATATCTGATCTGGTGGCTCTGCCACATATATCTGCTCTGGTGGCTCT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGATCTGGTGACTCT
80285960 GCCACGATTATCTGAT
66 GCCACGATTATCTGAT
* * *
80285976 CTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTG-ATCTGGTGACT
** *
80286040 CTGTTAC-ATTATCTGTT
64 CTGCCACGATTATCTGAT
80286057 CTGG
1 CTGG
80286061 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
81 58 0.78
82 16 0.22
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.36
Consensus pattern (81 bp):
CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGATCTGGTGACTCT
GCCACGATTATCTGAT
Found at i:80289184 original size:40 final size:40
Alignment explanation
Indices: 80289075--80290015 Score: 1723
Period size: 40 Copynumber: 23.6 Consensus size: 40
80289065 TATTCGGATG
* *
80289075 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGA-T
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
80289114 -TAATTCCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA-T
1 ATAA--CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
* *
80289153 CATATCCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 -ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289194 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289234 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289274 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289314 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289354 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289394 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289434 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289474 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289514 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289554 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289594 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289634 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289674 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289714 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289754 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289794 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289834 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289874 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
80289914 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
*
80289954 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CT
* **
80289994 AT-ATCGGGCTAAACCCCGAAGG
1 ATAACCGGGCTAAGTCCCGAAGG
80290016 TACTTGGTTT
Statistics
Matches: 883, Mismatches: 12, Indels: 14
0.97 0.01 0.02
Matches are distributed among these distances:
38 3 0.00
39 49 0.06
40 828 0.94
41 3 0.00
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT
Found at i:80297904 original size:40 final size:40
Alignment explanation
Indices: 80297799--80298000 Score: 270
Period size: 40 Copynumber: 5.1 Consensus size: 40
80297789 CGGATGATAA
* * *
80297799 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
*
80297839 CCGGGCTAAG-CCCGAAGGCAATTGTGCGAGTTA-TCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAT
* *
80297878 CCGGGCAAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
80297918 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-AT
*
80297959 -CGGGCTAAGTCCCGAAGGCATTTGAGCGAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
80297998 CCG
1 CCG
80298001 ACTAAACCTC
Statistics
Matches: 146, Mismatches: 9, Indels: 14
0.86 0.05 0.08
Matches are distributed among these distances:
38 1 0.01
39 35 0.24
40 108 0.74
41 2 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:80303302 original size:26 final size:26
Alignment explanation
Indices: 80303273--80303380 Score: 198
Period size: 26 Copynumber: 4.2 Consensus size: 26
80303263 TGGTACAAAT
*
80303273 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
80303299 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
80303325 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
80303351 TGATAATGGATTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
80303377 TGAT
1 TGAT
80303381 GGGCATTTCA
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 79 1.00
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.35
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:80305003 original size:27 final size:27
Alignment explanation
Indices: 80304963--80305109 Score: 177
Period size: 27 Copynumber: 5.4 Consensus size: 27
80304953 AGGAAGCGTC
*
80304963 CTGGTGGCTATGCCACAAATATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
80304990 CTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
80305017 CTAGTGGCTCTGCCACGATTATCTGAT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* * *
80305044 CTGGTAGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAAATATCTGAT
* *
80305071 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAAATATCTG-AT
*
80305099 CTGGTGACTCT
1 CTGGTGGCTCT
80305110 ATCACATTGT
Statistics
Matches: 99, Mismatches: 20, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
27 88 0.89
28 11 0.11
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAAATATCTGAT
Found at i:80305122 original size:27 final size:27
Alignment explanation
Indices: 80304982--80305128 Score: 113
Period size: 27 Copynumber: 5.4 Consensus size: 27
80304972 ATGCCACAAA
* * *
80304982 TATCTGATCTGGTGGCTCTGCCAC-AT
1 TATCTGTTCTGGTGACTCTACCACGAT
* * * *
80305008 ATATCTGCTCTAGTGGCTCTGCCACGAT
1 -TATCTGTTCTGGTGACTCTACCACGAT
* *
80305036 TATCTGATCTGGT-AGCTCTGCCAC-AT
1 TATCTGTTCTGGTGA-CTCTACCACGAT
* *
80305062 ATATCTGTTCTGGTGGCTCTGCCACGAT
1 -TATCTGTTCTGGTGACTCTACCACGAT
*
80305090 TATCTGTATCTGGTGACTCTATCAC-AT
1 TATCTGT-TCTGGTGACTCTACCACGAT
*
80305117 TGTCTGTTCTGG
1 TATCTGTTCTGG
80305129 CAGCCATGCT
Statistics
Matches: 103, Mismatches: 11, Indels: 13
0.81 0.09 0.10
Matches are distributed among these distances:
26 7 0.07
27 78 0.76
28 18 0.17
ACGTcount: A:0.16, C:0.25, G:0.22, T:0.37
Consensus pattern (27 bp):
TATCTGTTCTGGTGACTCTACCACGAT
Found at i:80305123 original size:54 final size:54
Alignment explanation
Indices: 80304963--80305128 Score: 219
Period size: 54 Copynumber: 3.1 Consensus size: 54
80304953 AGGAAGCGTC
* * * * *
80304963 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGCT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
*
80305017 CTAGTGGCTCTGCCACGATTATCTGATCTGGT-AGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACGATTATCTGATCTGGTGA-CTCTGCCACATATATCTGTT
** *
80305071 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTATCACAT-TGTCTGTT
1 CTGGTGGCTCTGCCACGATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
80305125 CTGG
1 CTGG
80305129 CAGCCATGCT
Statistics
Matches: 99, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
54 82 0.83
55 16 0.16
56 1 0.01
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTCTGCCACGATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:80305128 original size:81 final size:81
Alignment explanation
Indices: 80304963--80305137 Score: 201
Period size: 81 Copynumber: 2.2 Consensus size: 81
80304953 AGGAAGCGTC
* * *
80304963 CTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGCTCTAGTGGCTCT
1 CTGGTAGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGATCTAGTGACTCT
*
80305028 GCCACGATTATCTGAT
66 ACCACGATTATCTGAT
* * * *
80305044 CTGGTAGCTCTGCCACATATATCTGTTCTGGTGGCTCTGCCACGAT-TATCTGTATCTGGTGACT
1 CTGGTAGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCAC-ATATATCTG-ATCTAGTGACT
* * *
80305108 CTATCAC-ATTGTCTGTT
64 CTACCACGATTATCTGAT
* *
80305125 CTGGCAGCCATGC
1 CTGGTAGCTATGC
80305138 TGCAAATTCT
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
81 63 0.81
82 15 0.19
ACGTcount: A:0.18, C:0.26, G:0.22, T:0.34
Consensus pattern (81 bp):
CTGGTAGCTATGCCACAAATATCTGATCTGGTGGCTCTGCCACATATATCTGATCTAGTGACTCT
ACCACGATTATCTGAT
Found at i:80308496 original size:45 final size:45
Alignment explanation
Indices: 80308432--80308614 Score: 140
Period size: 45 Copynumber: 4.1 Consensus size: 45
80308422 GAGTAGGTTA
** * * *
80308432 ATCATGATTCAAACAAGTAAGACCAT-AGTTGAAAGATGTTATGAC
1 ATCATGATTCAAATGAGTAAGACCATAACTT-AAAGACGCTATGAC
*
80308477 ATCATGATTCAAATGAGTAAGACCATAACTTAAAGACGCTATGGC
1 ATCATGATTCAAATGAGTAAGACCATAACTTAAAGACGCTATGAC
*** * * * *
80308522 ATCATGACGGAAGTGAGTAAGACCATGACTGAAAGACGTTAT-AGC
1 ATCATGATTCAAATGAGTAAGACCATAACTTAAAGACGCTATGA-C
* * * * *
80308567 ATTATG-GT-AAATAGGACTAAGACCATACCTGAAAGACGCTATGAC
1 ATCATGATTCAAAT--GAGTAAGACCATAACTTAAAGACGCTATGAC
80308612 ATC
1 ATC
80308615 CTTTGATAGT
Statistics
Matches: 110, Mismatches: 23, Indels: 10
0.77 0.16 0.07
Matches are distributed among these distances:
43 3 0.03
45 103 0.94
46 4 0.04
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.23
Consensus pattern (45 bp):
ATCATGATTCAAATGAGTAAGACCATAACTTAAAGACGCTATGAC
Found at i:80309843 original size:27 final size:27
Alignment explanation
Indices: 80309809--80309878 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
80309799 TCGTAGGGCA
80309809 AATA-AGTCATTTTACCTTACAAGGGT
1 AATACAGTCATTTTACCTTACAAGGGT
*
80309835 AATACAGTCATTTTACCTTACAGGGGT
1 AATACAGTCATTTTACCTTACAAGGGT
80309862 AATAC-GATCATTTTACC
1 AATACAG-TCATTTTACC
80309879 CTATCGGGGT
Statistics
Matches: 41, Mismatches: 1, Indels: 3
0.91 0.02 0.07
Matches are distributed among these distances:
26 5 0.12
27 36 0.88
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.34
Consensus pattern (27 bp):
AATACAGTCATTTTACCTTACAAGGGT
Found at i:80309969 original size:53 final size:54
Alignment explanation
Indices: 80309873--80309978 Score: 160
Period size: 53 Copynumber: 2.0 Consensus size: 54
80309863 ATACGATCAT
* * * *
80309873 TTTACCCTATCGGGGTATTTCGGTCATTTTACCTTATGAGGGTATTTTGGTCAA
1 TTTACCCTATCGGGGAATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTCAA
*
80309927 TTTACCCTAT-GGGGAATTTCAGTCATTTTACCCTATGGGGGTATTTCGGTCA
1 TTTACCCTATCGGGGAATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTCA
80309979 CCATTTCGGC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 37 0.79
54 10 0.21
ACGTcount: A:0.19, C:0.18, G:0.23, T:0.41
Consensus pattern (54 bp):
TTTACCCTATCGGGGAATTTCAGTCATTTTACCCTATGAGGGTATTTCGGTCAA
Found at i:80309978 original size:27 final size:27
Alignment explanation
Indices: 80309841--80309978 Score: 152
Period size: 27 Copynumber: 5.1 Consensus size: 27
80309831 GGGTAATACA
* ** * *
80309841 GTCATTTTACCTTACAGGGGTAATACG
1 GTCATTTTACCCTATGGGGGTATTTCG
* *
80309868 ATCATTTTACCCTATCGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
80309895 GTCATTTTACCTTATGAGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* * *
80309922 GTCAATTTACCCTAT-GGGGAATTTCA
1 GTCATTTTACCCTATGGGGGTATTTCG
80309948 GTCATTTTACCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
80309975 GTCA
1 GTCA
80309979 CCATTTCGGC
Statistics
Matches: 90, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
26 21 0.23
27 69 0.77
ACGTcount: A:0.21, C:0.18, G:0.22, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:80315559 original size:46 final size:46
Alignment explanation
Indices: 80315464--80315585 Score: 131
Period size: 46 Copynumber: 2.6 Consensus size: 46
80315454 TAAGAGCCAA
* *
80315464 TGTAAGACCATGTCTGGGACACAGCATCAGCATCGAGACGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACA-TGCATCGGCATCGAGACGAGTGCTAG
* *
80315512 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGAC-A-TAAGTTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGT--GCTAG
* * *
80315558 TGTAACACATGTTTGGGACATGTATCGG
1 TGTAAGACATGTCTGGGACATGCATCGG
80315586 TTATAAGATG
Statistics
Matches: 65, Mismatches: 7, Indels: 6
0.83 0.09 0.08
Matches are distributed among these distances:
44 1 0.02
45 1 0.02
46 43 0.66
47 13 0.20
48 7 0.11
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCATCGAGACGAGTGCTAG
Found at i:80321093 original size:75 final size:75
Alignment explanation
Indices: 80320970--80321119 Score: 291
Period size: 75 Copynumber: 2.0 Consensus size: 75
80320960 TTAATATTTA
*
80320970 GTATGACGAAGGACTCGTTAAGCCTGAACCAGAACTGAGGCAAGAAACTGTGGTAAGCAAAGGTC
1 GTATGACGAAGGACTCGTTAAGCCTGAACCAGAACCGAGGCAAGAAACTGTGGTAAGCAAAGGTC
80321035 AAGGTAAGGT
66 AAGGTAAGGT
80321045 GTATGACGAAGGACTCGTTAAGCCTGAACCAGAACCGAGGCAAGAAACTGTGGTAAGCAAAGGTC
1 GTATGACGAAGGACTCGTTAAGCCTGAACCAGAACCGAGGCAAGAAACTGTGGTAAGCAAAGGTC
80321110 AAGGTAAGGT
66 AAGGTAAGGT
80321120 AGATCAAAAT
Statistics
Matches: 74, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
75 74 1.00
ACGTcount: A:0.36, C:0.17, G:0.31, T:0.17
Consensus pattern (75 bp):
GTATGACGAAGGACTCGTTAAGCCTGAACCAGAACCGAGGCAAGAAACTGTGGTAAGCAAAGGTC
AAGGTAAGGT
Found at i:80322667 original size:55 final size:55
Alignment explanation
Indices: 80322543--80322669 Score: 159
Period size: 55 Copynumber: 2.3 Consensus size: 55
80322533 TGAGCCTGCC
* *
80322543 AAAACAACACGGGCATGTGACACGCCCGTGTGGAAGAACCGTGGGCGAACATGTT
1 AAAACAACACGGGCGTGTGACACGCCCGCGTGGAAGAACCGTGGGCGAACATGTT
* * *
80322598 AAAACAACACGGGCGT-TCGACACGCCCGCGTGGAA-CACTCGTGGTCGAACCTGTT
1 AAAACAACACGGGCGTGT-GACACGCCCGCGTGGAAGAAC-CGTGGGCGAACATGTT
**
80322653 AAATTAACACGGGCGTG
1 AAAACAACACGGGCGTG
80322670 GGGCTTGCAC
Statistics
Matches: 62, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
54 3 0.05
55 59 0.95
ACGTcount: A:0.29, C:0.26, G:0.29, T:0.16
Consensus pattern (55 bp):
AAAACAACACGGGCGTGTGACACGCCCGCGTGGAAGAACCGTGGGCGAACATGTT
Found at i:80326059 original size:15 final size:15
Alignment explanation
Indices: 80326039--80326073 Score: 70
Period size: 15 Copynumber: 2.3 Consensus size: 15
80326029 TCAACTTGTA
80326039 ATGTTTGAAACTTTT
1 ATGTTTGAAACTTTT
80326054 ATGTTTGAAACTTTT
1 ATGTTTGAAACTTTT
80326069 ATGTT
1 ATGTT
80326074 CTTTTAGTTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 20 1.00
ACGTcount: A:0.26, C:0.06, G:0.14, T:0.54
Consensus pattern (15 bp):
ATGTTTGAAACTTTT
Found at i:80331317 original size:47 final size:46
Alignment explanation
Indices: 80331266--80331383 Score: 134
Period size: 46 Copynumber: 2.5 Consensus size: 46
80331256 AAGTCGAAGT
*
80331266 CATGTCCCAGACATGGTCTTACACTGACTATCAT-T-TCGTA-GCCGACG
1 CATGTCCCAAACAT-GTCTTACACT-ACT-TCATGTCTCG-AGGCCGACG
* * * *
80331313 CATGTCCCATACATGTCTTACACTAGTTTATGTCTCGAGGCCGATG
1 CATGTCCCAAACATGTCTTACACTACTTCATGTCTCGAGGCCGACG
80331359 CATGTCCCAAACATGTCTTACACTA
1 CATGTCCCAAACATGTCTTACACTA
80331384 GCACTCATCT
Statistics
Matches: 63, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
44 3 0.05
45 4 0.06
46 43 0.68
47 13 0.21
ACGTcount: A:0.25, C:0.29, G:0.17, T:0.30
Consensus pattern (46 bp):
CATGTCCCAAACATGTCTTACACTACTTCATGTCTCGAGGCCGACG
Found at i:80331402 original size:46 final size:45
Alignment explanation
Indices: 80331306--80331430 Score: 117
Period size: 46 Copynumber: 2.7 Consensus size: 45
80331296 TCATTTCGTA
* * * * *
80331306 GCCGACGCATGTCCCATACATGTCTTACACTAGTTTATGTCTCGAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTAG-TCATATCTCAAG
*
80331352 GCCGATGCATGTCCCAAACATGTCTTACACTAG-CACTCATCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTAGTCA-T-ATCTCAAG
* **
80331398 GCCGATGCCCTGTAGCAAACATGGTCTTACACT
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACT
80331431 GGCTTACACA
Statistics
Matches: 66, Mismatches: 9, Indels: 6
0.81 0.11 0.07
Matches are distributed among these distances:
44 1 0.02
45 1 0.02
46 43 0.65
47 11 0.17
48 10 0.15
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (45 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTAGTCATATCTCAAG
Found at i:80333576 original size:26 final size:27
Alignment explanation
Indices: 80333547--80333622 Score: 73
Period size: 27 Copynumber: 2.9 Consensus size: 27
80333537 TACACATCGT
*
80333547 AAGGCAAAT-TAGTCATTTTACCTTAC
1 AAGGCAAATACAGTCATTTTACCTTAC
**
80333573 AAGGGTAATACAGTCATTTTACCTTAC
1 AAGGCAAATACAGTCATTTTACCTTAC
** ***
80333600 GGGGGTCATACAGTCATTTTACC
1 AAGGCAAATACAGTCATTTTACC
80333623 CTATGGGGGT
Statistics
Matches: 43, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
26 7 0.16
27 36 0.84
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (27 bp):
AAGGCAAATACAGTCATTTTACCTTAC
Found at i:80333630 original size:27 final size:27
Alignment explanation
Indices: 80333557--80333633 Score: 109
Period size: 27 Copynumber: 2.9 Consensus size: 27
80333547 AAGGCAAATT
**
80333557 AGTCATTTTACCTTACAAGGGTAATAC
1 AGTCATTTTACCTTACGGGGGTAATAC
*
80333584 AGTCATTTTACCTTACGGGGGTCATAC
1 AGTCATTTTACCTTACGGGGGTAATAC
* *
80333611 AGTCATTTTACCCTATGGGGGTA
1 AGTCATTTTACCTTACGGGGGTA
80333634 TTTTGGTCAT
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (27 bp):
AGTCATTTTACCTTACGGGGGTAATAC
Found at i:80333642 original size:27 final size:27
Alignment explanation
Indices: 80333585--80333695 Score: 109
Period size: 27 Copynumber: 4.1 Consensus size: 27
80333575 GGGTAATACA
* * * *
80333585 GTCATTTTACCTTACGGGGGTCA-TACA
1 GTCATTTTACCCTATGGGGGT-ATTTCG
*
80333612 GTCATTTTACCCTATGGGGGTATTTTG
1 GTCATTTTACCCTATGGGGGTATTTCG
* ***
80333639 GTCATTTTACACTA-CAAGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
*
80333665 GTCATTTTGCCCTATGGGGGTATTTCG
1 GTCATTTTACCCTATGGGGGTATTTCG
80333692 GTCA
1 GTCA
80333696 CCATTTCGGC
Statistics
Matches: 67, Mismatches: 15, Indels: 4
0.78 0.17 0.05
Matches are distributed among these distances:
26 21 0.31
27 46 0.69
ACGTcount: A:0.19, C:0.19, G:0.23, T:0.39
Consensus pattern (27 bp):
GTCATTTTACCCTATGGGGGTATTTCG
Found at i:80333724 original size:81 final size:80
Alignment explanation
Indices: 80333639--80333881 Score: 378
Period size: 81 Copynumber: 3.0 Consensus size: 80
80333629 GGGTATTTTG
* * *
80333639 GTCATTTTACACTACAAGGTATTTCGGTCATTTTGCCCTATGGGGGTATTTCGGTCACCATTTCG
1 GTCATTTTAC-CTACAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCACCATTTCG
80333704 GCCTAACATGGCCCAA
65 GCCTAACATGGCCCAA
* * *
80333720 GTCATTTTACCCTACAGGGTATTTCAGTCATTTTACCCTATGAGGGTATTTCAGTTACCATTTCG
1 GTCATTTTA-CCTACAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCACCATTTCG
*
80333785 GCCTAACATTGCCCAA
65 GCCTAACATGGCCCAA
* *
80333801 GTCATTTTACCTTACAGGGCATTTCGATCATTTTACCCTATGAGGGTATTTCGGTCACCATTTCG
1 GTCATTTTACC-TACAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCACCATTTCG
80333866 GCCTAACATGGCCCAA
65 GCCTAACATGGCCCAA
80333882 AACAGCCTAA
Statistics
Matches: 147, Mismatches: 13, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
80 2 0.01
81 144 0.98
82 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.19, T:0.34
Consensus pattern (80 bp):
GTCATTTTACCTACAGGGTATTTCGGTCATTTTACCCTATGAGGGTATTTCGGTCACCATTTCGG
CCTAACATGGCCCAA
Found at i:80333751 original size:26 final size:27
Alignment explanation
Indices: 80333719--80333774 Score: 96
Period size: 26 Copynumber: 2.1 Consensus size: 27
80333709 ACATGGCCCA
80333719 AGTCATTTTACCCTA-CAGGGTATTTC
1 AGTCATTTTACCCTATCAGGGTATTTC
*
80333745 AGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATCAGGGTATTTC
80333772 AGT
1 AGT
80333775 TACCATTTCG
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
26 15 0.54
27 13 0.46
ACGTcount: A:0.23, C:0.20, G:0.18, T:0.39
Consensus pattern (27 bp):
AGTCATTTTACCCTATCAGGGTATTTC
Found at i:80333773 original size:27 final size:27
Alignment explanation
Indices: 80333557--80333774 Score: 99
Period size: 27 Copynumber: 8.1 Consensus size: 27
80333547 AAGGCAAATT
* ** * *
80333557 AGTCATTTTACCTTACAAGGGTAATAC
1 AGTCATTTTACCCTATGAGGGTATTTC
* * * *
80333584 AGTCATTTTACCTTACGGGGGTCA-TAC
1 AGTCATTTTACCCTATGAGGGT-ATTTC
* *
80333611 AGTCATTTTACCCTATGGGGGTATTTT
1 AGTCATTTTACCCTATGAGGGTATTTC
* * * *
80333638 GGTCATTTTACACTA-CAAGGTATTTC
1 AGTCATTTTACCCTATGAGGGTATTTC
* * *
80333664 GGTCATTTTGCCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGAGGGTATTTC
* * ** * **
80333691 GGTCACCATTT-CGGCCTAACATGG---CCC
1 AGTCA--TTTTAC--CCTATGAGGGTATTTC
*
80333718 AAGTCATTTTACCCTA-CAGGGTATTTC
1 -AGTCATTTTACCCTATGAGGGTATTTC
80333745 AGTCATTTTACCCTATGAGGGTATTTC
1 AGTCATTTTACCCTATGAGGGTATTTC
80333772 AGT
1 AGT
80333775 TACCATTTCG
Statistics
Matches: 148, Mismatches: 30, Indels: 26
0.73 0.15 0.13
Matches are distributed among these distances:
24 4 0.03
25 4 0.03
26 39 0.26
27 86 0.58
28 6 0.04
29 3 0.02
30 6 0.04
ACGTcount: A:0.22, C:0.21, G:0.20, T:0.36
Consensus pattern (27 bp):
AGTCATTTTACCCTATGAGGGTATTTC
Found at i:80336357 original size:13 final size:13
Alignment explanation
Indices: 80336339--80336381 Score: 59
Period size: 13 Copynumber: 3.3 Consensus size: 13
80336329 GTGCAGAGGA
80336339 CACATGGCCAGAT
1 CACATGGCCAGAT
*
80336352 CACATGGCTAGAT
1 CACATGGCCAGAT
* *
80336365 CACACGCCCAGAT
1 CACATGGCCAGAT
80336378 CACA
1 CACA
80336382 CGCCCATGGG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 26 1.00
ACGTcount: A:0.33, C:0.35, G:0.19, T:0.14
Consensus pattern (13 bp):
CACATGGCCAGAT
Found at i:80336382 original size:13 final size:13
Alignment explanation
Indices: 80336346--80336387 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
80336336 GGACACATGG
* *
80336346 CCAGATCACATGG
1 CCAGATCACACGC
*
80336359 CTAGATCACACGC
1 CCAGATCACACGC
80336372 CCAGATCACACGC
1 CCAGATCACACGC
80336385 CCA
1 CCA
80336388 TGGGCTGACC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
13 25 1.00
ACGTcount: A:0.31, C:0.40, G:0.17, T:0.12
Consensus pattern (13 bp):
CCAGATCACACGC
Found at i:80352419 original size:40 final size:40
Alignment explanation
Indices: 80352374--80352645 Score: 274
Period size: 40 Copynumber: 6.8 Consensus size: 40
80352364 TATAACCACA
** *
80352374 AGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAGTAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * *
80352414 CGCACAAATGTCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
80352454 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
80352494 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * * **
80352534 AGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* * * *
80352574 CGCACAAATGCCTTCGGATCTTAGTCCGGATAAAATCACT
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
* *
80352614 AGCACAATTGCCTTCGGGACTTAGCCCGGATA
1 AGCACAAATGCCTTCGGGTCTTAGCCCGGATA
80352646 TCATTCAAAT
Statistics
Matches: 178, Mismatches: 54, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
40 178 1.00
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
AGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATAACT
Found at i:80352494 original size:80 final size:80
Alignment explanation
Indices: 80352346--80352642 Score: 472
Period size: 80 Copynumber: 3.7 Consensus size: 80
80352336 ACCCAAGTTT
* * * * * * *
80352346 CTTCGGAAT-TTAG-CCGGATATAACCACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATTTAG
1 CTTCGG-ATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAG
* *
80352409 TAACTCGCACAAATGT
65 CAACTCGCACAAATGC
80352425 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
80352490 AACTCGCACAAATGC
66 AACTCGCACAAATGC
80352505 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
80352570 AACTCGCACAAATGC
66 AACTCGCACAAATGC
* *
80352585 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGACTTAGCCCGG
1 CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGG
80352643 ATATCATTCA
Statistics
Matches: 205, Mismatches: 11, Indels: 3
0.94 0.05 0.01
Matches are distributed among these distances:
78 2 0.01
79 10 0.05
80 193 0.94
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
CTTCGGATCTTAGTCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
AACTCGCACAAATGC
Found at i:80366754 original size:48 final size:48
Alignment explanation
Indices: 80366668--80366983 Score: 410
Period size: 48 Copynumber: 6.7 Consensus size: 48
80366658 ACAATGCCTC
* * *
80366668 ATGCTGATGACATGTCCCAGAAATGGTCTTACACTGGCTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
* * *
80366716 ATGCCAATGCCATGTCCCAGACATGGTCTTACATTGGCTCACATAACA
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
* * * * *
80366764 ATGTCAATGCGATGTCCTAGACATGGTCTTACACTAGCTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
* *
80366812 ATGCCGATGCTATGTCTCAGACATGGTCTTACACTGGCTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
* *
80366860 ATGCCGATGCCATGTCCCAGACATTGTCTTACACTGACTCACATAACG
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
* * * *
80366908 ATGCCGATGCCATGTCCCAAACATGGTCTTATA-TGG----GATCAC-
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
*
80366950 ATGCCGATGCCATGTCCCAGATATGGTCTTACAC
1 ATGCCGATGCCATGTCCCAGACATGGTCTTACAC
80366984 GGTTACACAT
Statistics
Matches: 236, Mismatches: 31, Indels: 7
0.86 0.11 0.03
Matches are distributed among these distances:
42 30 0.13
43 4 0.02
47 2 0.01
48 200 0.85
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (48 bp):
ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACG
Found at i:80371851 original size:16 final size:17
Alignment explanation
Indices: 80371827--80371873 Score: 53
Period size: 16 Copynumber: 2.9 Consensus size: 17
80371817 TGCCAAGTTC
80371827 ATGCATATCATAACAAA
1 ATGCATATCATAACAAA
* **
80371844 AT-CATATC-TAAGATT
1 ATGCATATCATAACAAA
80371859 ATGCATATCATAACA
1 ATGCATATCATAACA
80371874 CATGCATTGA
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
15 6 0.25
16 12 0.50
17 6 0.25
ACGTcount: A:0.47, C:0.17, G:0.06, T:0.30
Consensus pattern (17 bp):
ATGCATATCATAACAAA
Found at i:80371878 original size:16 final size:16
Alignment explanation
Indices: 80371826--80371880 Score: 51
Period size: 16 Copynumber: 3.4 Consensus size: 16
80371816 TTGCCAAGTT
80371826 CATGCATATCATAACAA
1 CATGCATATCATAAC-A
* *
80371843 AAT-CATATC-TAAGA
1 CATGCATATCATAACA
*
80371857 TTATGCATATCATAACA
1 -CATGCATATCATAACA
80371874 CATGCAT
1 CATGCAT
80371881 TGATTAGAAA
Statistics
Matches: 30, Mismatches: 5, Indels: 7
0.71 0.12 0.17
Matches are distributed among these distances:
14 1 0.03
15 5 0.17
16 18 0.60
17 6 0.20
ACGTcount: A:0.44, C:0.20, G:0.07, T:0.29
Consensus pattern (16 bp):
CATGCATATCATAACA
Found at i:80378526 original size:4 final size:4
Alignment explanation
Indices: 80378519--80378566 Score: 96
Period size: 4 Copynumber: 12.0 Consensus size: 4
80378509 ACTTGCTTGA
80378519 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
1 TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG TATG
80378567 ATGCATGATG
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 44 1.00
ACGTcount: A:0.25, C:0.00, G:0.25, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:80391169 original size:41 final size:41
Alignment explanation
Indices: 80391112--80391196 Score: 161
Period size: 41 Copynumber: 2.1 Consensus size: 41
80391102 GGAGAGAAAA
80391112 TCTGGAAATAAGAATCATTAATTAGCCTAATTCTTTAATGT
1 TCTGGAAATAAGAATCATTAATTAGCCTAATTCTTTAATGT
*
80391153 TCTGGAAATAAGAATCATTAATTATCCTAATTCTTTAATGT
1 TCTGGAAATAAGAATCATTAATTAGCCTAATTCTTTAATGT
80391194 TCT
1 TCT
80391197 CAATTGAAAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
41 43 1.00
ACGTcount: A:0.35, C:0.13, G:0.11, T:0.41
Consensus pattern (41 bp):
TCTGGAAATAAGAATCATTAATTAGCCTAATTCTTTAATGT
Found at i:80398049 original size:32 final size:32
Alignment explanation
Indices: 80398012--80398077 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
80398002 GCCAAGTTAG
*
80398012 CTTATACATACCATTATACAAAAATGATTTTA
1 CTTATACATACCATTATACAAAAATGAGTTTA
80398044 CTTATACATACCATTATACAAAAATGAGTTTA
1 CTTATACATACCATTATACAAAAATGAGTTTA
80398076 CT
1 CT
80398078 ATTTCTTCCA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.42, C:0.17, G:0.05, T:0.36
Consensus pattern (32 bp):
CTTATACATACCATTATACAAAAATGAGTTTA
Found at i:80400016 original size:47 final size:48
Alignment explanation
Indices: 80399965--80400058 Score: 120
Period size: 49 Copynumber: 2.0 Consensus size: 48
80399955 TAGTCTATCG
*
80399965 ATGTATACT-ACT-ATCTTTCACCACACTAATAGGCACATAAGTGCATC
1 ATGTATA-TAACTAATCTTTCACCACACTAATAGGCACACAAGTGCATC
* * *
80400012 ATGTATATAAAGTAATCTTTCACCACACTGATGGGCACACAAGTGCA
1 ATGTATAT-AACTAATCTTTCACCACACTAATAGGCACACAAGTGCA
80400059 AATAATAATC
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
46 1 0.03
47 7 0.17
48 2 0.05
49 30 0.75
ACGTcount: A:0.35, C:0.23, G:0.14, T:0.28
Consensus pattern (48 bp):
ATGTATATAACTAATCTTTCACCACACTAATAGGCACACAAGTGCATC
Found at i:80402226 original size:51 final size:51
Alignment explanation
Indices: 80402135--80402234 Score: 134
Period size: 51 Copynumber: 2.0 Consensus size: 51
80402125 AGATATGTGG
* *
80402135 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATGGTGGATGTGATT-CATGTAA
1 CATCCGAGCTCGTTGAGAGGTCTGAGTTCATAGTGAATGTG-TTACATGTAA
80402186 CATCCGAGCTCGTTGAGAGGTAC-GAGTTCATTAGT-AATGTGTTACATGT
1 CATCCGAGCTCGTTGAGAGGT-CTGAGTTCA-TAGTGAATGTGTTACATGT
80402235 TATGTGGTAG
Statistics
Matches: 44, Mismatches: 2, Indels: 6
0.85 0.04 0.12
Matches are distributed among these distances:
50 2 0.05
51 38 0.86
52 4 0.09
ACGTcount: A:0.23, C:0.16, G:0.29, T:0.32
Consensus pattern (51 bp):
CATCCGAGCTCGTTGAGAGGTCTGAGTTCATAGTGAATGTGTTACATGTAA
Found at i:80405958 original size:30 final size:30
Alignment explanation
Indices: 80405924--80405984 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
80405914 TCCTTAACTC
80405924 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
80405954 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
80405984 A
1 A
80405985 GGCTCAGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:80408299 original size:26 final size:26
Alignment explanation
Indices: 80408269--80408321 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
80408259 TAACTCATAA
*
80408269 TTAACAACACTTTAGCTAATTAATTT
1 TTAACAACACTTTAACTAATTAATTT
80408295 TTAACAACACTTTAACTAATTAATTT
1 TTAACAACACTTTAACTAATTAATTT
80408321 T
1 T
80408322 GACACATTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.40, C:0.15, G:0.02, T:0.43
Consensus pattern (26 bp):
TTAACAACACTTTAACTAATTAATTT
Found at i:80409533 original size:36 final size:35
Alignment explanation
Indices: 80409492--80409563 Score: 110
Period size: 36 Copynumber: 2.0 Consensus size: 35
80409482 CCTTAAGTGG
*
80409492 GAAAGAGTTGTAACAT-TTATATATTGGGCTTGGAA
1 GAAAGAGTTGTAACATCCT-TATATTGGGCTTGGAA
80409527 NGAAAGAGTTGTAACATCCTTATATTGGGCTTGGAA
1 -GAAAGAGTTGTAACATCCTTATATTGGGCTTGGAA
80409563 G
1 G
80409564 TTTTGGCCTC
Statistics
Matches: 34, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
35 1 0.03
36 32 0.94
37 1 0.03
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.32
Consensus pattern (35 bp):
GAAAGAGTTGTAACATCCTTATATTGGGCTTGGAA
Found at i:80419133 original size:246 final size:246
Alignment explanation
Indices: 80418699--80419190 Score: 975
Period size: 246 Copynumber: 2.0 Consensus size: 246
80418689 AGCCGAGTTG
80418699 TTGCAACCGGGTTCTGATACCACTAAATGTAACACCCTAAACTCGGCCCAGACGTTACGGCCGAA
1 TTGCAACCGGGTTCTGATACCACTAAATGTAACACCCTAAACTCGGCCCAGACGTTACGGCCGAA
*
80418764 TTCAGTGTGTCACATGGGGAATGTTACTGAAGAAGTTATGTTTTATCCAAAAATCTTTCTTAGGG
66 TTCAGTGTGTCACATGGGGAATGTTACTAAAGAAGTTATGTTTTATCCAAAAATCTTTCTTAGGG
80418829 TTTGAAGAATGTTTTGTTTTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCCAGAAA
131 TTTGAAGAATGTTTTGTTTTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCCAGAAA
80418894 AGAGGAGGTGAGTCTGGTGGACTACTTAAGTACCAAGCTCTTCACGGATCC
196 AGAGGAGGTGAGTCTGGTGGACTACTTAAGTACCAAGCTCTTCACGGATCC
80418945 TTGCAACCGGGTTCTGATACCACTAAATGTAACACCCTAAACTCGGCCCAGACGTTACGGCCGAA
1 TTGCAACCGGGTTCTGATACCACTAAATGTAACACCCTAAACTCGGCCCAGACGTTACGGCCGAA
80419010 TTCAGTGTGTCACATGGGGAATGTTACTAAAGAAGTTATGTTTTATCCAAAAATCTTTCTTAGGG
66 TTCAGTGTGTCACATGGGGAATGTTACTAAAGAAGTTATGTTTTATCCAAAAATCTTTCTTAGGG
80419075 TTTGAAGAATGTTTTGTTTTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCCAGAAA
131 TTTGAAGAATGTTTTGTTTTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCCAGAAA
80419140 AGAGGAGGTGAGTCTGGTGGACTACTTAAGTACCAAGCTCTTCACGGATCC
196 AGAGGAGGTGAGTCTGGTGGACTACTTAAGTACCAAGCTCTTCACGGATCC
80419191 AATCCTAGAC
Statistics
Matches: 245, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
246 245 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (246 bp):
TTGCAACCGGGTTCTGATACCACTAAATGTAACACCCTAAACTCGGCCCAGACGTTACGGCCGAA
TTCAGTGTGTCACATGGGGAATGTTACTAAAGAAGTTATGTTTTATCCAAAAATCTTTCTTAGGG
TTTGAAGAATGTTTTGTTTTAAGTTAAAGTGAACGGAAGCTGTGCACCAGGTAGGAAGCCAGAAA
AGAGGAGGTGAGTCTGGTGGACTACTTAAGTACCAAGCTCTTCACGGATCC
Found at i:80419623 original size:27 final size:26
Alignment explanation
Indices: 80419567--80419623 Score: 60
Period size: 26 Copynumber: 2.2 Consensus size: 26
80419557 CAACCTTAAC
* * *
80419567 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTGTACA
* *
80419593 CCTAGGGGTAAATCTGTAAATTGTCCA
1 CCTAGGGGTAAATCAGT-AATTGTACA
80419620 CCTA
1 CCTA
80419624 TAAAGGTATT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 15 0.60
27 10 0.40
ACGTcount: A:0.28, C:0.19, G:0.19, T:0.33
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTGTACA
Found at i:80420692 original size:20 final size:21
Alignment explanation
Indices: 80420669--80420715 Score: 69
Period size: 22 Copynumber: 2.2 Consensus size: 21
80420659 TAGGGTGATC
80420669 AGAAG-GTTTCGGCTAACAGA
1 AGAAGAGTTTCGGCTAACAGA
*
80420689 AGAAGCATTTTCGGCTAACAGA
1 AGAAG-AGTTTCGGCTAACAGA
80420711 AGAAG
1 AGAAG
80420716 CATAAGGGAA
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 5 0.21
22 19 0.79
ACGTcount: A:0.38, C:0.15, G:0.28, T:0.19
Consensus pattern (21 bp):
AGAAGAGTTTCGGCTAACAGA
Found at i:80420701 original size:22 final size:22
Alignment explanation
Indices: 80420675--80420718 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
80420665 GATCAGAAGG
80420675 TTTCGGCTAACAGAAGAAGCAT
1 TTTCGGCTAACAGAAGAAGCAT
80420697 TTTCGGCTAACAGAAGAAGCAT
1 TTTCGGCTAACAGAAGAAGCAT
80420719 AAGGGAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.23, T:0.23
Consensus pattern (22 bp):
TTTCGGCTAACAGAAGAAGCAT
Found at i:80426647 original size:43 final size:44
Alignment explanation
Indices: 80426581--80426749 Score: 179
Period size: 43 Copynumber: 3.9 Consensus size: 44
80426571 AAGCTTGTAC
* *
80426581 GCCAA-TGTCCCAGACGTGGTCTTACATGTAATCAAATATCGAT
1 GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATCGAT
* *
80426624 GCC-ACTGTCCCACACAAGGTCTTACATGAAATCAAATA-CGAT
1 GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATCGAT
* * * * *
80426666 GCCGA-TGTCCCAGGCTTGGTCTTACACGTAAATCATAA-GTCGAT
1 GCCAACTGTCCCAGACATGGTCTTACATG-AAATCA-AATATCGAT
* *
80426710 GCCAAC-GTCCCAGACGTGGTCTTACATGAAATCATATATC
1 GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATC
80426750 AAAAATCCTA
Statistics
Matches: 103, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
42 27 0.26
43 47 0.46
44 29 0.28
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.25
Consensus pattern (44 bp):
GCCAACTGTCCCAGACATGGTCTTACATGAAATCAAATATCGAT
Found at i:80426731 original size:86 final size:85
Alignment explanation
Indices: 80426585--80426743 Score: 214
Period size: 86 Copynumber: 1.9 Consensus size: 85
80426575 TTGTACGCCA
*
80426585 ATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGCCACTGTCCCACACAAGGTCTTACA
1 ATGTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCACACAAGGTCTTACA
80426650 TGAAATCAAATACGATGCCG
66 TGAAATCAAATACGATGCCG
* * * * **
80426670 ATGTCCCAGGCTTGGTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCAGACGTGGTCTT
1 ATGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCGATGCC-ACTGTCCCACACAAGGTCTT
80426733 ACATGAAATCA
63 ACATGAAATCA
80426744 TATATCAAAA
Statistics
Matches: 64, Mismatches: 7, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
85 22 0.34
86 38 0.59
87 4 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (85 bp):
ATGTCCCAGACGTGGTCTTACACGTAATCAAATATCGATGCCACTGTCCCACACAAGGTCTTACA
TGAAATCAAATACGATGCCG
Found at i:80430569 original size:40 final size:40
Alignment explanation
Indices: 80430511--80430721 Score: 282
Period size: 40 Copynumber: 5.3 Consensus size: 40
80430501 ATTTGAATGA
* *
80430511 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
80430551 TATCCGGGTTAAGACCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
*
80430591 TATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
* * *
80430631 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATTT
* * * * * *
80430671 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
80430711 TATCC-GGCTAA
1 TATCCGGGCTAA
80430722 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 17, Indels: 5
0.87 0.10 0.03
Matches are distributed among these distances:
39 7 0.05
40 143 0.94
41 2 0.01
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATTT
Found at i:80438855 original size:40 final size:40
Alignment explanation
Indices: 80438796--80439007 Score: 252
Period size: 40 Copynumber: 5.3 Consensus size: 40
80438786 CATTTGAATG
*
80438796 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* * *
80438836 TTATCCGGGTTAAGACCCGAAGGCATTTATGCTAGTGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
* *
80438876 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* *
80438916 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAG-TGATT
* * * * *
80438956 ATA-CCTAGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
1 ATATCC-GGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
80438996 ATATCC-GGCTAA
1 ATATCCGGGCTAA
80439008 ATTCCGAAGA
Statistics
Matches: 152, Mismatches: 15, Indels: 11
0.85 0.08 0.06
Matches are distributed among these distances:
39 9 0.06
40 138 0.91
41 5 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGTGATT
Found at i:80448425 original size:42 final size:41
Alignment explanation
Indices: 80448334--80448490 Score: 147
Period size: 43 Copynumber: 3.7 Consensus size: 41
80448324 CAATGCCAAC
* * * * *
80448334 GTCCCAAACATGGTGTTACATGTAATCAAATATCGATGTCACT
1 GTCCCAGACAGGGTCTTACACGAAATCAAATA-CGATGTCA-T
80448377 GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGTCGAT
1 GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGTC-AT
** * *
80448419 GTCCCAGACATAGTCTTACACGTAAATCATAAGT-CGATGCCAAC
1 GTCCCAGACAGGGTCTTACACG-AAATCA-AA-TACGATGTC-AT
80448463 GTCCCAGAC-GTGGTCTTACACGAAATCA
1 GTCCCAGACAG-GGTCTTACACGAAATCA
80448491 TCATATATCA
Statistics
Matches: 97, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
42 28 0.29
43 40 0.41
44 28 0.29
45 1 0.01
ACGTcount: A:0.32, C:0.25, G:0.18, T:0.24
Consensus pattern (41 bp):
GTCCCAGACAGGGTCTTACACGAAATCAAATACGATGTCAT
Found at i:80454545 original size:44 final size:43
Alignment explanation
Indices: 80454470--80454552 Score: 107
Period size: 44 Copynumber: 1.9 Consensus size: 43
80454460 ATTTCCCTTT
*
80454470 TTCTATTTCTTTCCATTTTCTTCTCCCTTTATTTCATTTTCAA
1 TTCTATTTCTTTCCATTTTCTTCTCCCTTTATTTAATTTTCAA
*
80454513 TTCTATTTCTTTTCCATCTTT-TAT-TCCTTTTATTTAATTT
1 TTCTATTTC-TTTCCAT-TTTCT-TCTCCCTTTATTTAATTT
80454553 ATATAATATA
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
43 9 0.26
44 22 0.63
45 4 0.11
ACGTcount: A:0.14, C:0.22, G:0.00, T:0.64
Consensus pattern (43 bp):
TTCTATTTCTTTCCATTTTCTTCTCCCTTTATTTAATTTTCAA
Found at i:80454571 original size:13 final size:13
Alignment explanation
Indices: 80454553--80454582 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
80454543 TATTTAATTT
80454553 ATATAATATAATA
1 ATATAATATAATA
80454566 ATATAATATAATA
1 ATATAATATAATA
80454579 ATAT
1 ATAT
80454583 TTTCTTAAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (13 bp):
ATATAATATAATA
Found at i:80459114 original size:47 final size:45
Alignment explanation
Indices: 80459020--80459139 Score: 147
Period size: 47 Copynumber: 2.7 Consensus size: 45
80459010 ATTTGTGTTT
* *
80459020 ATGCCGTGTCCCAGACA-GGTCTTACACTGACACATGTCAAGCTG
1 ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCAAGCTG
* * *
80459064 ATGCCATGTCCTAGACATGGTCTGACACTAGCTCACATCTCAAG-TCG
1 ATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCAAGCT-G
80459111 ATGCCATGTCCCAGACAT-GTCTTACACTG
1 ATGCCATGTCCCAGACATGGTCTTACACTG
80459140 GCTTTCACTA
Statistics
Matches: 65, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
44 15 0.23
45 11 0.17
46 11 0.17
47 28 0.43
ACGTcount: A:0.25, C:0.30, G:0.20, T:0.25
Consensus pattern (45 bp):
ATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCAAGCTG
Found at i:80464468 original size:27 final size:26
Alignment explanation
Indices: 80464424--80464475 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80464414 GGACTATCGA
*
80464424 TTTACCCCTGGAGGGTAAAATGACTAT
1 TTTACCCCTGGAGCGT-AAATGACTAT
* *
80464451 TTTACCCCTTGTGCGTAAATGACTA
1 TTTACCCCTGGAGCGTAAATGACTA
80464476 ACTTGTGTGA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 9 0.41
27 13 0.59
ACGTcount: A:0.27, C:0.21, G:0.19, T:0.33
Consensus pattern (26 bp):
TTTACCCCTGGAGCGTAAATGACTAT
Found at i:80465117 original size:27 final size:26
Alignment explanation
Indices: 80465073--80465124 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
80465063 CTTGCTGCAA
*
80465073 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
80465100 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
80465125 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:80465189 original size:33 final size:32
Alignment explanation
Indices: 80465140--80465203 Score: 83
Period size: 33 Copynumber: 2.0 Consensus size: 32
80465130 CTCGCTGCAA
* *
80465140 TCTGGTGGCTTCGCCACACATATATATATCTGT
1 TCTGGTGGCCTAGCCACA-ATATATATATCTGT
* *
80465173 TCTGGTGGCCTAGCCACAATATCTGTATCTG
1 TCTGGTGGCCTAGCCACAATATATATATCTG
80465204 GTGACTTCGT
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
32 11 0.41
33 16 0.59
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.34
Consensus pattern (32 bp):
TCTGGTGGCCTAGCCACAATATATATATCTGT
Found at i:80467058 original size:42 final size:42
Alignment explanation
Indices: 80466945--80467071 Score: 146
Period size: 43 Copynumber: 3.0 Consensus size: 42
80466935 TCGTAAGCTC
* * * * *
80466945 ATACAATGCCAATGTCTCAGACGTGGTCTTACATGTAGTCAA
1 ATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATCAA
* * * * *
80466987 ATATCGAAGCCACTGTCCCAGACAAGGTCTTACACGAAATCAT
1 ATA-CGATGCCAATGTCTCAGACATGGTCTTACACGAAATCAA
80467030 ATACGATGCCAATGTCTCAGACATGGTCTTACACGTAAATCA
1 ATACGATGCCAATGTCTCAGACATGGTCTTACACG-AAATCA
80467072 CCAGTTGATG
Statistics
Matches: 69, Mismatches: 14, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
42 31 0.45
43 38 0.55
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.25
Consensus pattern (42 bp):
ATACGATGCCAATGTCTCAGACATGGTCTTACACGAAATCAA
Found at i:80467095 original size:44 final size:42
Alignment explanation
Indices: 80466944--80467102 Score: 124
Period size: 43 Copynumber: 3.7 Consensus size: 42
80466934 CTCGTAAGCT
* * * * * * *
80466944 CATACAATGCCAATGTCTCAGACGTGGTCTTACATGTAGTCA
1 CATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
* * *
80466986 AATATCGAAGCC-ACTGTCCCAGACAAGGTCTTACACGAAATCA
1 CATA-CGATGCCAAC-GTCCCAGACATGGTCTTACACGAAATCA
* * *
80467029 TATACGATGCCAATGTCTCAGACATGGTCTTACACGTAAATCA
1 CATACGATGCCAACGTCCCAGACATGGTCTTACACG-AAATCA
* *
80467072 CCAGT-TGATGCCAACGTCCCAGACGTGGTCT
1 -CA-TACGATGCCAACGTCCCAGACATGGTCT
80467103 CGATAACACA
Statistics
Matches: 91, Mismatches: 20, Indels: 10
0.75 0.17 0.08
Matches are distributed among these distances:
42 30 0.33
43 37 0.41
44 23 0.25
45 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
CATACGATGCCAACGTCCCAGACATGGTCTTACACGAAATCA
Found at i:80473948 original size:23 final size:23
Alignment explanation
Indices: 80473918--80473964 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
80473908 AGGTATCAAG
80473918 TTAATTCATACCTGACATATGGC
1 TTAATTCATACCTGACATATGGC
80473941 TTAATTCATACCTGACATATGGC
1 TTAATTCATACCTGACATATGGC
80473964 T
1 T
80473965 CGTTTTACAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.30, C:0.21, G:0.13, T:0.36
Consensus pattern (23 bp):
TTAATTCATACCTGACATATGGC
Found at i:80475189 original size:30 final size:30
Alignment explanation
Indices: 80475153--80475212 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
80475143 GTGTCCATCC
80475153 AAACATCCAAGGGTATAATTGCATTATAAA
1 AAACATCCAAGGGTATAATTGCATTATAAA
*
80475183 AAACATCCAAGGGTATAATTGCGTTATAAA
1 AAACATCCAAGGGTATAATTGCATTATAAA
80475213 CACCCCACAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.45, C:0.13, G:0.15, T:0.27
Consensus pattern (30 bp):
AAACATCCAAGGGTATAATTGCATTATAAA
Found at i:80477271 original size:44 final size:43
Alignment explanation
Indices: 80477164--80477254 Score: 121
Period size: 42 Copynumber: 2.1 Consensus size: 43
80477154 AAAGCCACTA
* * * *
80477164 TCCCAGACAAGGTCTTACACG-AAATCATATACGATGCCAATG
1 TCCCAAACATGGTCTTACACGAAAATCACAAACGATGCCAATG
*
80477206 TCTCAAACATGGTCTTACACGAAAATCACAAATCGATGCCAATG
1 TCCCAAACATGGTCTTACACGAAAATCACAAA-CGATGCCAATG
80477250 TCCCA
1 TCCCA
80477255 GATGTGGTCA
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
42 18 0.44
43 8 0.20
44 15 0.37
ACGTcount: A:0.36, C:0.27, G:0.14, T:0.22
Consensus pattern (43 bp):
TCCCAAACATGGTCTTACACGAAAATCACAAACGATGCCAATG
Found at i:80478648 original size:22 final size:25
Alignment explanation
Indices: 80478599--80478648 Score: 70
Period size: 22 Copynumber: 2.1 Consensus size: 25
80478589 AACACAAAGA
80478599 TTCTATCCTCTATTTTCTTCCTCCT
1 TTCTATCCTCTATTTTCTTCCTCCT
*
80478624 TTCT-TCCT-TATTTTC-TCCTCTT
1 TTCTATCCTCTATTTTCTTCCTCCT
80478646 TTC
1 TTC
80478649 ACTCACCTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 9 0.38
23 7 0.29
24 4 0.17
25 4 0.17
ACGTcount: A:0.06, C:0.34, G:0.00, T:0.60
Consensus pattern (25 bp):
TTCTATCCTCTATTTTCTTCCTCCT
Found at i:80480117 original size:20 final size:20
Alignment explanation
Indices: 80480092--80480191 Score: 76
Period size: 20 Copynumber: 5.0 Consensus size: 20
80480082 TTGTCCACTT
*
80480092 ATACTGACAGCTTTTCTACA
1 ATACTGACAGCTTGTCTACA
***
80480112 ATACTGGTGGCTTGTCTACA
1 ATACTGACAGCTTGTCTACA
** * *
80480132 ATACTGGTAGCTTGTTTGCA
1 ATACTGACAGCTTGTCTACA
*** *
80480152 ATACTGGTGGCTTGTCCACA
1 ATACTGACAGCTTGTCTACA
*
80480172 ATACTGGCAGCTTGT-TACA
1 ATACTGACAGCTTGTCTACA
80480191 A
1 A
80480192 CCATGGGTAT
Statistics
Matches: 66, Mismatches: 14, Indels: 1
0.81 0.17 0.01
Matches are distributed among these distances:
19 4 0.06
20 62 0.94
ACGTcount: A:0.24, C:0.21, G:0.21, T:0.34
Consensus pattern (20 bp):
ATACTGACAGCTTGTCTACA
Found at i:80480187 original size:40 final size:40
Alignment explanation
Indices: 80480018--80480187 Score: 175
Period size: 40 Copynumber: 4.2 Consensus size: 40
80480008 GGAAGTATTA
* * *
80480018 GCAGCTTATTTGCAACATTGGTGAC-TGTCCACATATACTG
1 GCAGCTTGTTTGCAACACTGGTGGCTTGTCCACA-ATACTG
* * * *
80480058 GCAGCTTGTCTGCAACACTAGT-GTTTGTCCACTTATACTG
1 GCAGCTTGTTTGCAACACTGGTGGCTTGTCCAC-AATACTG
* * * *
80480098 ACAGCTT-TTCTACAATACTGGTGGCTTGTCTACAATACTG
1 GCAGCTTGTT-TGCAACACTGGTGGCTTGTCCACAATACTG
* *
80480138 GTAGCTTGTTTGCAATACTGGTGGCTTGTCCACAATACTG
1 GCAGCTTGTTTGCAACACTGGTGGCTTGTCCACAATACTG
80480178 GCAGCTTGTT
1 GCAGCTTGTT
80480188 ACAACCATGG
Statistics
Matches: 105, Mismatches: 20, Indels: 10
0.78 0.15 0.07
Matches are distributed among these distances:
39 1 0.01
40 94 0.90
41 10 0.10
ACGTcount: A:0.22, C:0.22, G:0.21, T:0.35
Consensus pattern (40 bp):
GCAGCTTGTTTGCAACACTGGTGGCTTGTCCACAATACTG
Found at i:80483550 original size:46 final size:46
Alignment explanation
Indices: 80483500--80484412 Score: 1590
Period size: 46 Copynumber: 19.8 Consensus size: 46
80483490 TGGTTGAGCA
80483500 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483546 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483592 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483638 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483684 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483730 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483776 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483822 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483868 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483914 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80483960 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80484006 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80484052 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80484098 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
80484144 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80484190 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
80484235 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80484283 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80484328 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80484376 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80484413 GCGGGTTACA
Statistics
Matches: 833, Mismatches: 16, Indels: 36
0.94 0.02 0.04
Matches are distributed among these distances:
42 4 0.00
43 10 0.01
45 6 0.01
46 736 0.88
47 58 0.07
48 6 0.01
50 9 0.01
51 4 0.00
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80484259 original size:47 final size:47
Alignment explanation
Indices: 80484190--80484358 Score: 240
Period size: 47 Copynumber: 3.6 Consensus size: 47
80484180 GATGCGAATG
80484190 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
* * *
80484237 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCA
80484283 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
80484330 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC
80484359 ACTTATGGAT
Statistics
Matches: 107, Mismatches: 6, Indels: 18
0.82 0.05 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 29 0.27
47 58 0.54
48 3 0.03
50 5 0.05
51 2 0.02
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (47 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGGCA
Found at i:80487173 original size:6 final size:6
Alignment explanation
Indices: 80487162--80487262 Score: 95
Period size: 6 Copynumber: 16.8 Consensus size: 6
80487152 AACCAAAATA
*
80487162 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
80487210 AGTAA-C AGACTC AGAATC AGAATC A-ATATT AGTAA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGA-ATC AG-AATC AGAATC AGAATC
80487258 AGAAT
1 AGAAT
80487263 GTGAATGCAA
Statistics
Matches: 79, Mismatches: 6, Indels: 20
0.75 0.06 0.19
Matches are distributed among these distances:
5 7 0.09
6 66 0.84
7 4 0.05
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (6 bp):
AGAATC
Found at i:80487214 original size:30 final size:30
Alignment explanation
Indices: 80487162--80487262 Score: 168
Period size: 30 Copynumber: 3.4 Consensus size: 30
80487152 AACCAAAATA
*
80487162 AGAATCAGAATCAGA-ATCAGTAACAGAATC
1 AGAATCAGAATCA-ATATTAGTAACAGAATC
*
80487192 AGAATCAGAATCAATATTAGTAACAGACTC
1 AGAATCAGAATCAATATTAGTAACAGAATC
80487222 AGAATCAGAATCAATATTAGTAACAGAATC
1 AGAATCAGAATCAATATTAGTAACAGAATC
80487252 AGAATCAGAAT
1 AGAATCAGAAT
80487263 GTGAATGCAA
Statistics
Matches: 67, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
29 1 0.01
30 66 0.99
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (30 bp):
AGAATCAGAATCAATATTAGTAACAGAATC
Found at i:80487417 original size:27 final size:26
Alignment explanation
Indices: 80487380--80487445 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
80487370 AGCATGGCTG
*
80487380 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
80487406 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
80487433 CCAGAATCAGATA
1 CCAGAA-CAGATA
80487446 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:80487450 original size:27 final size:27
Alignment explanation
Indices: 80487380--80487453 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
80487370 AGCATGGCTG
* *
80487380 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
80487406 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
80487433 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
80487454 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:80487460 original size:27 final size:27
Alignment explanation
Indices: 80487404--80487461 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
80487394 GTGACAGAGT
* * *
80487404 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
80487431 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
80487458 CACC
1 CACC
80487462 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:80487666 original size:22 final size:22
Alignment explanation
Indices: 80487618--80487676 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
80487608 GTAAATACGT
*
80487618 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
80487640 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
80487662 TTGGCACAAATCCAT
1 TTGGCACAAAGCCAT
80487677 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.22
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:80487845 original size:27 final size:26
Alignment explanation
Indices: 80487764--80487846 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
80487754 TCGATCGGTC
* * *
80487764 AACAGATATTGTGACAGAGTCACCAA
1 AACAGATATTGTGGCAGAGCCACCAG
80487790 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
* *
80487817 AACAGATATTTGTGGCATAGCCACTAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
80487844 AAC
1 AAC
80487847 GCTTCCTCCG
Statistics
Matches: 50, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
26 8 0.16
27 42 0.84
ACGTcount: A:0.37, C:0.20, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:80488075 original size:27 final size:27
Alignment explanation
Indices: 80488045--80488160 Score: 126
Period size: 27 Copynumber: 4.3 Consensus size: 27
80488035 GGGGCAAAAT
* * *
80488045 GGTAATTTTACCCCATAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* *
80488072 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
80488099 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
80488126 GATAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
*
80488153 AGTAATTT
1 GGTAATTT
80488161 CACAATCAAG
Statistics
Matches: 73, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
26 3 0.04
27 67 0.92
28 3 0.04
ACGTcount: A:0.25, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:80488194 original size:27 final size:27
Alignment explanation
Indices: 80488164--80488428 Score: 311
Period size: 27 Copynumber: 9.8 Consensus size: 27
80488154 GTAATTTCAC
* *
80488164 AATCAAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
80488191 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
80488218 AA-CTGAGGGTAAACCAGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
* * * **
80488245 AATCAAGGGTAAAACGATAATTTTACA
1 AATCGAGGGTAAAACGGTAATTCTGTA
*
80488272 AATCGATGGTAAAACGGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
**
80488299 AATCGAGGGTAAAAAAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
* *
80488326 AA-CTGAGGGTAAAACAGTAATTCTATA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
**
80488353 AATCGAGGGTAAAATAGTAATTCTGTA
1 AATCGAGGGTAAAACGGTAATTCTGTA
80488380 AA-CTGAGGGTAAAACGGTAATTCTGTA
1 AATC-GAGGGTAAAACGGTAATTCTGTA
*
80488407 AATCAAGGGTAAAACGGTAATT
1 AATCGAGGGTAAAACGGTAATT
80488429 TTACAAGTCG
Statistics
Matches: 201, Mismatches: 31, Indels: 12
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.01
27 195 0.97
28 3 0.01
ACGTcount: A:0.42, C:0.10, G:0.21, T:0.27
Consensus pattern (27 bp):
AATCGAGGGTAAAACGGTAATTCTGTA
Found at i:80488455 original size:81 final size:81
Alignment explanation
Indices: 80488164--80488442 Score: 375
Period size: 81 Copynumber: 3.4 Consensus size: 81
80488154 GTAATTTCAC
* *
80488164 AATCAAGGGTAAAACGGTAATTCTATAAATCGAGGGTAAAAC-GATAATTTTGTAAACTGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAG-TAATTCTGTAAACTGAGGGT
*
80488228 AAACCAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* * * *
80488245 AATCAAGGGTAAAACGATAATTTTACAAATCGATGGTAAAACGGTAATTCTGTAAA-TCGAGGGT
1 AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAACT-GAGGGT
*
80488309 AAAAAAGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* * * *
80488326 AA-CTGAGGGTAAAACAGTAATTCTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGGT
1 AATC-AAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGT
*
80488390 AAAACGGTAATTCTGTA
65 AAAACAGTAATTCTGTA
* *
80488407 AATCAAGGGTAAAACGGTAATTTTACAAGTCGAGGG
1 AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGG
80488443 CATTTCAGTA
Statistics
Matches: 171, Mismatches: 22, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
80 2 0.01
81 166 0.97
82 3 0.02
ACGTcount: A:0.41, C:0.10, G:0.22, T:0.27
Consensus pattern (81 bp):
AATCAAGGGTAAAACGGTAATTCTACAAATCGAGGGTAAAACAGTAATTCTGTAAACTGAGGGTA
AAACAGTAATTCTGTA
Found at i:80490965 original size:138 final size:138
Alignment explanation
Indices: 80490717--80491029 Score: 464
Period size: 138 Copynumber: 2.3 Consensus size: 138
80490707 TTTGACATGA
* * * * *
80490717 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTCTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATATTTCAAC
** *
80490782 CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCA
66 CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
*
80490847 TGTCACGC
131 TATCACGC
* * **
80490855 TGCCATGGTATCTTTCAACCATGGTGTTTTTCATTTCCCGTCATGTTGCCATGGTATATTTCAAC
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATATTTCAAC
* *
80490920 CATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
* *
80490985 TATCATGT
131 TATCACGC
*
80490993 TGCCATGGTATCTTTCAACTATGGTCTTACGCATTTC
1 TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTC
80491030 ATTTCAGAGA
Statistics
Matches: 153, Mismatches: 22, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
138 153 1.00
ACGTcount: A:0.19, C:0.24, G:0.16, T:0.42
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACTATGGTCTTACTCATTTCCCGTCATGTTGCCATGGTATATTTCAAC
CATGGTCTTATCCTTTTCATGTCAAGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCACGC
Found at i:80491029 original size:46 final size:46
Alignment explanation
Indices: 80490712--80491031 Score: 401
Period size: 46 Copynumber: 7.0 Consensus size: 46
80490702 TTATCTTTGA
* * * *
80490712 CATGATGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCA-TTTCATGT
*
80490758 CATGTTGCCATGGTATCTTTCAACCATGGTCTTA-TCCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACT-CATTTCATGT
* * *
80490804 CAAGTTGCCATGGTATCTTTCAACCATGGTCTTATTCGTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * * ** **
80490850 CACGCTGCCATGGTATCTTTCAACCATGGTGTTTTTCATTTCCCGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
80490896 CATGTTGCCATGGTATATTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* * *
80490942 CACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
* *
80490988 CATGTTGCCATGGTATCTTTCAACTATGGTCTTACGCATTTCAT
1 CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCAT
80491032 TTCAGAGAGC
Statistics
Matches: 240, Mismatches: 31, Indels: 6
0.87 0.11 0.02
Matches are distributed among these distances:
45 5 0.02
46 234 0.98
47 1 0.00
ACGTcount: A:0.19, C:0.23, G:0.16, T:0.42
Consensus pattern (46 bp):
CATGTTGCCATGGTATCTTTCAACCATGGTCTTACTCATTTCATGT
Found at i:80504628 original size:41 final size:41
Alignment explanation
Indices: 80504580--80504669 Score: 144
Period size: 41 Copynumber: 2.2 Consensus size: 41
80504570 GTCCTATGAG
* *
80504580 TGACAGCTTGTGTGAGCAGCACTCTGTAGCTACGTCCTGAC
1 TGACAGCTTGTGTGAGCAGCACTCTATAGCTACGTCCTAAC
*
80504621 TGACAGCTTGTTTGAGCAGCACTCTATAGCTACGTCCTAAC
1 TGACAGCTTGTGTGAGCAGCACTCTATAGCTACGTCCTAAC
*
80504662 TGATAGCT
1 TGACAGCT
80504670 CAAAAACGAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
41 45 1.00
ACGTcount: A:0.22, C:0.26, G:0.23, T:0.29
Consensus pattern (41 bp):
TGACAGCTTGTGTGAGCAGCACTCTATAGCTACGTCCTAAC
Found at i:80505912 original size:16 final size:17
Alignment explanation
Indices: 80505881--80505914 Score: 52
Period size: 16 Copynumber: 2.0 Consensus size: 17
80505871 TGGGTTAGGG
80505881 ACACGGGCGTGTGTGACT
1 ACACGGGCG-GTGTGACT
80505899 ACACGGGC-GTGTGACT
1 ACACGGGCGGTGTGACT
80505915 CCTGTTTAGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 8 0.50
18 8 0.50
ACGTcount: A:0.18, C:0.24, G:0.38, T:0.21
Consensus pattern (17 bp):
ACACGGGCGGTGTGACT
Found at i:80515693 original size:80 final size:80
Alignment explanation
Indices: 80515558--80515717 Score: 302
Period size: 80 Copynumber: 2.0 Consensus size: 80
80515548 ATTAAAATAA
80515558 ATTAAAGAAAGGAATTAAAAAGAAAAGATGAATAAAATAAGGAAGGAAGAGGGAGTATTCATCTT
1 ATTAAAGAAAGGAATTAAAAAGAAAAGATGAATAAAATAAGGAAGGAAGAGGGAGTATTCATCTT
80515623 CTTTCTTTTCTTTTT
66 CTTTCTTTTCTTTTT
*
80515638 ATTAAAGAAAGGAATTAAAAAGAAAAGATGAATAAAATAAGGAAGGAAGATGGAGTATTCATCTT
1 ATTAAAGAAAGGAATTAAAAAGAAAAGATGAATAAAATAAGGAAGGAAGAGGGAGTATTCATCTT
*
80515703 CTTTCTTTTTTTTTT
66 CTTTCTTTTCTTTTT
80515718 GCAATTGCCG
Statistics
Matches: 78, Mismatches: 2, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
80 78 1.00
ACGTcount: A:0.44, C:0.06, G:0.18, T:0.33
Consensus pattern (80 bp):
ATTAAAGAAAGGAATTAAAAAGAAAAGATGAATAAAATAAGGAAGGAAGAGGGAGTATTCATCTT
CTTTCTTTTCTTTTT
Found at i:80516804 original size:28 final size:28
Alignment explanation
Indices: 80516772--80516841 Score: 115
Period size: 28 Copynumber: 2.5 Consensus size: 28
80516762 AATGAGATTG
80516772 GCACTAAGTGTGCGAGTTTAATTG-TATA
1 GCACTAAGTGTGCGAGTTTAATTGTTA-A
*
80516800 GCACTAAGTGTGCGAGTTTGATTGTTAA
1 GCACTAAGTGTGCGAGTTTAATTGTTAA
80516828 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
80516842 GACTTACTAT
Statistics
Matches: 40, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
28 38 0.95
29 2 0.05
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTGTTAA
Found at i:80524712 original size:28 final size:28
Alignment explanation
Indices: 80524680--80524746 Score: 91
Period size: 28 Copynumber: 2.4 Consensus size: 28
80524670 AATGAGATTG
*
80524680 GCACTAAGTGTGCAAGTTTAATT-GTATA
1 GCACTAAGTGTGCAAGTTTAATTATTA-A
* *
80524708 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCAAGTTTAATTATTAA
80524736 GCACTAAGTGT
1 GCACTAAGTGT
80524747 ACGGACTTAC
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
28 33 0.94
29 2 0.06
ACGTcount: A:0.30, C:0.12, G:0.24, T:0.34
Consensus pattern (28 bp):
GCACTAAGTGTGCAAGTTTAATTATTAA
Found at i:80533845 original size:24 final size:24
Alignment explanation
Indices: 80533802--80533913 Score: 93
Period size: 24 Copynumber: 4.6 Consensus size: 24
80533792 ATATATCAAT
* * * *
80533802 TCATAAGAGCTTATTGTTCTTATC
1 TCATAAGAGCTTACTATTCTCAGC
80533826 TCATAAGAGCTTACTATTCTCAGC
1 TCATAAGAGCTTACTATTCTCAGC
* * *
80533850 TCATTAGAGTTTACTATT-TCCAAC
1 TCATAAGAGCTTACTATTCT-CAGC
*
80533874 TCA-ATAGAGCTTACTGTTCATCAGC
1 TCATA-AGAGCTTACTATTC-TCAGC
*
80533899 TCAGAAGGAGCTTAC
1 TCATAA-GAGCTTAC
80533914 CGATCATAGC
Statistics
Matches: 71, Mismatches: 11, Indels: 10
0.77 0.12 0.11
Matches are distributed among these distances:
23 1 0.01
24 53 0.75
25 7 0.10
26 10 0.14
ACGTcount: A:0.29, C:0.21, G:0.14, T:0.36
Consensus pattern (24 bp):
TCATAAGAGCTTACTATTCTCAGC
Found at i:80538129 original size:19 final size:18
Alignment explanation
Indices: 80538092--80538135 Score: 54
Period size: 19 Copynumber: 2.4 Consensus size: 18
80538082 ATACATACAG
80538092 TAAT-ATTTTTCTAATAA
1 TAATAATTTTTCTAATAA
*
80538109 TAATAATTTTATCTCATAA
1 TAATAATTTT-TCTAATAA
*
80538128 TACTAATT
1 TAATAATT
80538136 AAAATTTCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
17 4 0.17
18 5 0.22
19 14 0.61
ACGTcount: A:0.41, C:0.09, G:0.00, T:0.50
Consensus pattern (18 bp):
TAATAATTTTTCTAATAA
Found at i:80568067 original size:20 final size:20
Alignment explanation
Indices: 80568042--80568087 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
80568032 ATTGGGCCTT
80568042 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
80568062 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
80568081 GCCCATA
1 GCCCATA
80568088 ACAAAACAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:80568096 original size:19 final size:20
Alignment explanation
Indices: 80568054--80568097 Score: 54
Period size: 19 Copynumber: 2.2 Consensus size: 20
80568044 CCATATTAAC
** *
80568054 ACAGTTGGGCCCATTTCAAT
1 ACAGTTGGGCCCATAACAAA
80568074 ACAGTT-GGCCCATAACAAA
1 ACAGTTGGGCCCATAACAAA
80568093 ACAGT
1 ACAGT
80568098 CTCATATGAT
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
19 15 0.71
20 6 0.29
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (20 bp):
ACAGTTGGGCCCATAACAAA
Found at i:80568746 original size:16 final size:15
Alignment explanation
Indices: 80568725--80568754 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
80568715 GAAATGGCGT
80568725 CTTTTCGGCATTTTGG
1 CTTTTCGGC-TTTTGG
80568741 CTTTTCGGCTTTTG
1 CTTTTCGGCTTTTG
80568755 CCAATCTAGT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.03, C:0.20, G:0.23, T:0.53
Consensus pattern (15 bp):
CTTTTCGGCTTTTGG
Found at i:80573869 original size:44 final size:44
Alignment explanation
Indices: 80573806--80574198 Score: 175
Period size: 44 Copynumber: 8.6 Consensus size: 44
80573796 GGGTGTTACA
* * * * *
80573806 ACTGCAACTTTAAGGAGATAAAATTTATGGCTTTAATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTACTCC
* ** * *
80573850 ACTGCAACTTCAGGGAGATAAGACTTGTAACTTCAACCTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTACTCC
* * * *
80573894 ACTGCAATTTTAGTGAGATAAGGTTTGTGGCTTCAATCTACTCC
1 ACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTACTCC
* * * * *
80573938 ACAGTAACTTCAGGGAGATAAGATTCGCCATAATGACTTCAATCCA-TCTC
1 ACTGCAACTTCAGGGAGATAAGATT-----T-GTGGCTTCAATCTACTC-C
* *
80573988 ACTGCAACTTCAGGG-GTATAGGAATTGTGACTTGTAGC-TCAAATCTATTCC
1 ACTGCAACTTCAGGGAG-ATAAG-ATT-TG---TG--GCTTC-AATCTACTCC
* * ** *
80574039 ACTGCAACTTCAGGGAAATAAGATTCGCTATCTTCAA-CTTGCTCC
1 ACTGCAACTTCAGGGAGATAAGATTTG-TGGCTTCAATC-TACTCC
* * * * * * * * * *
80574084 ACTACAACTTTAGAGAGATAGGGTTAGTGGCTTTACTCTGCTCT
1 ACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTACTCC
* * * * * *
80574128 ACTGCAACTTCAGAGCA-ATAAGATTTATAGCTTTAATCTGCTCT
1 ACTGCAACTTCAG-GGAGATAAGATTTGTGGCTTCAATCTACTCC
* * *
80574172 ACTGTAACTTCAGAGAGATAATATTTG
1 ACTGCAACTTCAGGGAGATAAGATTTG
80574199 CTATAATAAC
Statistics
Matches: 257, Mismatches: 70, Indels: 44
0.69 0.19 0.12
Matches are distributed among these distances:
43 1 0.00
44 151 0.59
45 29 0.11
46 2 0.01
47 2 0.01
49 7 0.03
50 34 0.13
51 29 0.11
52 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (44 bp):
ACTGCAACTTCAGGGAGATAAGATTTGTGGCTTCAATCTACTCC
Found at i:80583933 original size:18 final size:18
Alignment explanation
Indices: 80583910--80583947 Score: 76
Period size: 18 Copynumber: 2.1 Consensus size: 18
80583900 TCTCAAATTT
80583910 CTCTAAGGAATGCACTTA
1 CTCTAAGGAATGCACTTA
80583928 CTCTAAGGAATGCACTTA
1 CTCTAAGGAATGCACTTA
80583946 CT
1 CT
80583948 ATCACTTTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.32, C:0.24, G:0.16, T:0.29
Consensus pattern (18 bp):
CTCTAAGGAATGCACTTA
Found at i:80589419 original size:111 final size:108
Alignment explanation
Indices: 80589231--80589610 Score: 342
Period size: 111 Copynumber: 3.6 Consensus size: 108
80589221 TTTTTTGGTG
* ** * *
80589231 GCCTCTTCACGTAGAGTAACCAAAATTAATAAAAAAAAATTCCCCTGGTGCCAACTC-AAGATGT
1 GCCTCTTCATGTAGAGGCACCAAAATCAGTAAAAAAAAATTCCCCTGGTGCCAACTCTAA-ATGT
* * *
80589295 GCCGACACTAATAATTTTTTTAATTTTTTTAAAAATTTTTCGGTGTT
65 GGCGACACCAATAATTTTTTT-ATTTTTTT--AAATTTTTCGGTGTC
* * *
80589342 GCCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAAATTCCCATGGTGCCAACTCTAGATGTG
1 GCCTCTTCATGTAGAGGCACCAAAATCAGTAAAAAAAAATTCCCCTGGTGCCAACTCTAAATGTG
* * *
80589407 GCGGCACCAATAATTTTTTCTA--CTTTTCAA--------TGTC
66 GCGACACCAATAATTTTTT-TATTTTTTTAAATTTTTCGGTGTC
* * * *
80589441 ACCTCATCATGTAGAGGCACCAAAATCTGTAAAAAAAAAATTCCCCTGGTGCCAACTCCAAATGT
1 GCCTCTTCATGTAGAGGCACCAAAATCAGT-AAAAAAAAATTCCCCTGGTGCCAACTCTAAATGT
* * ** *
80589506 GACGATACCTGTAA----TTT-TTTTTTTAAATTTTTCGGTGCC
65 GGCGACACCAATAATTTTTTTATTTTTTTAAATTTTTCGGTGTC
* * ** *
80589545 GCCTCTTCATGTGGAGGCACCAAAATTAGTAAAAAAAAATTTTCCTGGTGTCAACTCTAAATGTG
1 GCCTCTTCATGTAGAGGCACCAAAATCAGTAAAAAAAAATTCCCCTGGTGCCAACTCTAAATGTG
80589610 G
66 G
80589611 TGGCATCACT
Statistics
Matches: 217, Mismatches: 39, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
95 1 0.00
96 8 0.04
99 29 0.13
100 40 0.18
103 31 0.14
104 28 0.13
107 2 0.01
109 4 0.02
111 72 0.33
112 2 0.01
ACGTcount: A:0.32, C:0.21, G:0.16, T:0.32
Consensus pattern (108 bp):
GCCTCTTCATGTAGAGGCACCAAAATCAGTAAAAAAAAATTCCCCTGGTGCCAACTCTAAATGTG
GCGACACCAATAATTTTTTTATTTTTTTAAATTTTTCGGTGTC
Found at i:80589521 original size:100 final size:101
Alignment explanation
Indices: 80589343--80589609 Score: 297
Period size: 100 Copynumber: 2.6 Consensus size: 101
80589333 TTCGGTGTTG
* * * *
80589343 CCTCTTCATGTGGAGGCACCAAAATCAGTAAAAAAAAATTCCCATGGTGCCAACTCTAGATGTGG
1 CCTCTTCATGTGGAGGCACCAAAATCTGTAAAAAAAAATTCCCCTGGTGCCAACTCTAAATGTGA
* *
80589408 CGGCACCAATAA-TTTTTTCT-ACTTTTCAATGTCA
66 CGACACCAATAATTTTTTTCTAACTTTTCAATGCCA
* * *
80589442 CCTCATCATGTAGAGGCACCAAAATCTGTAAAAAAAAAATTCCCCTGGTGCCAACTCCAAATGTG
1 CCTCTTCATGTGGAGGCACCAAAATCTGT-AAAAAAAAATTCCCCTGGTGCCAACTCTAAATGTG
* ** * * ** *
80589507 ACGATACCTGTAATTTTTTTTTTAAATTTTTCGGTGCCG
65 ACGACACCAATAA-TTTTTTTCT-AACTTTTCAATGCCA
** *
80589546 CCTCTTCATGTGGAGGCACCAAAAT-TAGTAAAAAAAAATTTTCCTGGTGTCAACTCTAAATGTG
1 CCTCTTCATGTGGAGGCACCAAAATCT-GTAAAAAAAAATTCCCCTGGTGCCAACTCTAAATGTG
80589610 GTGGCATCAC
Statistics
Matches: 139, Mismatches: 23, Indels: 8
0.82 0.14 0.05
Matches are distributed among these distances:
99 26 0.19
100 40 0.29
102 7 0.05
103 32 0.23
104 34 0.24
ACGTcount: A:0.32, C:0.22, G:0.16, T:0.30
Consensus pattern (101 bp):
CCTCTTCATGTGGAGGCACCAAAATCTGTAAAAAAAAATTCCCCTGGTGCCAACTCTAAATGTGA
CGACACCAATAATTTTTTTCTAACTTTTCAATGCCA
Found at i:80589681 original size:16 final size:16
Alignment explanation
Indices: 80589660--80589690 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
80589650 TTGGTGAAGG
*
80589660 TTTTATTTTTATTATT
1 TTTTATTGTTATTATT
80589676 TTTTATTGTTATTAT
1 TTTTATTGTTATTAT
80589691 ATTGAAAGAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.77
Consensus pattern (16 bp):
TTTTATTGTTATTATT
Found at i:80590711 original size:101 final size:99
Alignment explanation
Indices: 80590492--80590755 Score: 285
Period size: 101 Copynumber: 2.6 Consensus size: 99
80590482 TTTGGTGCCG
* * * * * * *
80590492 CCACATTTGGAGTTGACACCAAGAAAAATTTTTTGTTTTTTACAAGTTTTGGTGTCTCTAAATAA
1 CCACATTTGGAGTTGGCACC-AG-AGAA-TTTTT-TTTTATA-GA-TTTTGGTGCCTCCACATAA
* ** *
80590557 AGAGGGGCATTGAAAAATTCAAAAAAATTTACTGGTGCTA
60 AGAGGGGCATCGAAAAATTCAAAAAAAAGTACTAGTGCTA
* *
80590597 TCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTATAGATTTTGGTGCCTCCACATATAGAGGC
1 CCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTATAGATTTTGGTGCCTCCACATAAAGAGG-
*
80590662 GGCATCGAATAATTCAAAAAAAAAGTACTAGTGCTA
65 GGCATCGAAAAATTC-AAAAAAAAGTACTAGTGCTA
* * * *
80590698 CCACATTTGGAGTTGGCACTAGGGATTTTTTTTTTTACAGATTTTGGTGCCTCCACAT
1 CCACATTTGGAGTTGGCACCAGAGA-ATTTTTTTTTATAGATTTTGGTGCCTCCACAT
80590756 GAAAAGGTAT
Statistics
Matches: 137, Mismatches: 19, Indels: 9
0.83 0.12 0.05
Matches are distributed among these distances:
99 20 0.15
100 14 0.10
101 45 0.33
102 35 0.26
103 3 0.02
104 2 0.01
105 18 0.13
ACGTcount: A:0.31, C:0.15, G:0.19, T:0.35
Consensus pattern (99 bp):
CCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTATAGATTTTGGTGCCTCCACATAAAGAGGG
GCATCGAAAAATTCAAAAAAAAGTACTAGTGCTA
Found at i:80590782 original size:101 final size:101
Alignment explanation
Indices: 80590569--80590786 Score: 244
Period size: 101 Copynumber: 2.2 Consensus size: 101
80590559 AGGGGCATTG
* ** * *
80590569 AAAAATTC-AAAAAAATTTACTGGTGCTATCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTA
1 AAAAAGTCAAAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTA
* * * *
80590633 TAGATTTTGGTGCCTCCACATATAGAGGCGGCATCG
66 CAGATTTTGGTGCCTCCACATATAAAGGCAGCATCA
* * * * *
80590669 AATAATTCAAAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACTAGGGATTTTTTTTTTT
1 AAAAAGTCAAAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACCAGAGA-ATTTTTTTTT
* **
80590734 ACAGATTTTGGTGCCTCCACATGA-AAAGGTATTATCA
65 ACAGATTTTGGTGCCTCCACAT-ATAAAGGCAGCATCA
80590771 AAAAAGT-AAAAAAAAA
1 AAAAAGTCAAAAAAAAA
80590787 TTATCGGTGC
Statistics
Matches: 98, Mismatches: 17, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
100 7 0.07
101 48 0.49
102 42 0.43
103 1 0.01
ACGTcount: A:0.36, C:0.14, G:0.18, T:0.32
Consensus pattern (101 bp):
AAAAAGTCAAAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTA
CAGATTTTGGTGCCTCCACATATAAAGGCAGCATCA
Found at i:80590783 original size:102 final size:101
Alignment explanation
Indices: 80590577--80590786 Score: 242
Period size: 102 Copynumber: 2.1 Consensus size: 101
80590567 TGAAAAATTC
** * * *
80590577 AAAAAAATTTACTGGTGCTATCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTATAGATTTTG
1 AAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTACAGATTTTG
* * * * * *
80590642 GTGCCTCCACATATAGAGGCGGCATCGAATAATTCA
66 GTGCCTCCACATATAAAGGCAGCATCAAAAAAGTAA
* * *
80590678 AAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACTAGGGATTTTTTTTTTTACAGATTTT
1 AAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACCAGAGA-ATTTTTTTTTACAGATTTT
* **
80590743 GGTGCCTCCACATGA-AAAGGTATTATCAAAAAAGTAA
65 GGTGCCTCCACAT-ATAAAGGCAGCATCAAAAAAGTAA
80590780 AAAAAAA
1 AAAAAAA
80590787 TTATCGGTGC
Statistics
Matches: 90, Mismatches: 17, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
101 39 0.43
102 50 0.56
103 1 0.01
ACGTcount: A:0.35, C:0.14, G:0.19, T:0.32
Consensus pattern (101 bp):
AAAAAAAAGTACTAGTGCTACCACATTTGGAGTTGGCACCAGAGAATTTTTTTTTACAGATTTTG
GTGCCTCCACATATAAAGGCAGCATCAAAAAAGTAA
Found at i:80592278 original size:4 final size:4
Alignment explanation
Indices: 80592271--80592301 Score: 53
Period size: 4 Copynumber: 7.8 Consensus size: 4
80592261 GAATATATAT
*
80592271 ATAG ATAG GTAG ATAG ATAG ATAG ATAG ATA
1 ATAG ATAG ATAG ATAG ATAG ATAG ATAG ATA
80592302 TGGATATAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.26, T:0.26
Consensus pattern (4 bp):
ATAG
Found at i:80596265 original size:45 final size:46
Alignment explanation
Indices: 80596200--80596290 Score: 166
Period size: 45 Copynumber: 2.0 Consensus size: 46
80596190 TTCAATGGTT
80596200 CCCCCCCCCCCAACCCTTCTTGGCCACATAAGTTTTGTTTTTGCAG
1 CCCCCCCCCCCAACCCTTCTTGGCCACATAAGTTTTGTTTTTGCAG
*
80596246 CCCCCCCCCCC-ACCCTTCTTGGTCACATAAGTTTTGTTTTTGCAG
1 CCCCCCCCCCCAACCCTTCTTGGCCACATAAGTTTTGTTTTTGCAG
80596291 TTGAATTTTA
Statistics
Matches: 44, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
45 33 0.75
46 11 0.25
ACGTcount: A:0.14, C:0.41, G:0.13, T:0.32
Consensus pattern (46 bp):
CCCCCCCCCCCAACCCTTCTTGGCCACATAAGTTTTGTTTTTGCAG
Found at i:80612938 original size:116 final size:116
Alignment explanation
Indices: 80611971--80612898 Score: 1838
Period size: 116 Copynumber: 8.0 Consensus size: 116
80611961 AGCTTCTAAA
* *
80611971 CAAGTTAAGCATAAATTAAGTACTAAACATTATAAAAAAAATTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612036 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612087 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612152 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612203 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612268 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612319 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612384 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612435 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612500 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612551 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612616 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612667 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612732 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612783 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
1 CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
80612848 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
66 ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
80612899 AAGATATAAG
Statistics
Matches: 810, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
116 810 1.00
ACGTcount: A:0.51, C:0.10, G:0.14, T:0.25
Consensus pattern (116 bp):
CAAGTTAAGCATAAATTAAGTACTAAACATTATACAAAAAGTTTAGAAAATGAATGGGAATTAGG
ATGTAAACCAATACGTCCTACTACTTATAAAAGATATAAAAAGAAAAATAG
Found at i:80614626 original size:5 final size:6
Alignment explanation
Indices: 80614604--80614645 Score: 57
Period size: 6 Copynumber: 6.5 Consensus size: 6
80614594 AAATTATATG
80614604 TTTTCTA TTTTTA TTTTTA TTTTTATA TTTTTA TTTTTA TTT
1 TTTT-TA TTTTTA TTTTTA -TTTT-TA TTTTTA TTTTTA TTT
80614646 ATTAAATTAT
Statistics
Matches: 33, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
6 19 0.58
7 12 0.36
8 2 0.06
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (6 bp):
TTTTTA
Found at i:80614632 original size:14 final size:14
Alignment explanation
Indices: 80614597--80614643 Score: 60
Period size: 14 Copynumber: 3.3 Consensus size: 14
80614587 TTGTATAAAA
*
80614597 TTATATGTTTTCTATT
1 TTATAT-TTTTAT-TT
80614613 TT-TATTTTTATTT
1 TTATATTTTTATTT
80614626 TTATATTTTTATTT
1 TTATATTTTTATTT
80614640 TTAT
1 TTAT
80614644 TTATTAAATT
Statistics
Matches: 29, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
13 4 0.14
14 20 0.69
15 3 0.10
16 2 0.07
ACGTcount: A:0.19, C:0.02, G:0.02, T:0.77
Consensus pattern (14 bp):
TTATATTTTTATTT
Found at i:80614632 original size:20 final size:20
Alignment explanation
Indices: 80614604--80614645 Score: 75
Period size: 20 Copynumber: 2.1 Consensus size: 20
80614594 AAATTATATG
*
80614604 TTTTCTATTTTTATTTTTAT
1 TTTTATATTTTTATTTTTAT
80614624 TTTTATATTTTTATTTTTAT
1 TTTTATATTTTTATTTTTAT
80614644 TT
1 TT
80614646 ATTAAATTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.17, C:0.02, G:0.00, T:0.81
Consensus pattern (20 bp):
TTTTATATTTTTATTTTTAT
Found at i:80614686 original size:13 final size:13
Alignment explanation
Indices: 80614670--80614694 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
80614660 AATTTTTATG
80614670 ATTGGGTTGGGTA
1 ATTGGGTTGGGTA
80614683 ATTGGGTTGGGT
1 ATTGGGTTGGGT
80614695 TGGATACTTG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.00, G:0.48, T:0.40
Consensus pattern (13 bp):
ATTGGGTTGGGTA
Found at i:80614694 original size:18 final size:18
Alignment explanation
Indices: 80614671--80614708 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
80614661 ATTTTTATGA
*
80614671 TTGGGTTGGGTAATTGGG
1 TTGGGTTGGATAATTGGG
*
80614689 TTGGGTTGGATACTTGGG
1 TTGGGTTGGATAATTGGG
80614707 TT
1 TT
80614709 AATATTTATT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.11, C:0.03, G:0.45, T:0.42
Consensus pattern (18 bp):
TTGGGTTGGATAATTGGG
Found at i:80617635 original size:26 final size:26
Alignment explanation
Indices: 80617569--80617644 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
80617559 AAAAGCAGCT
* * *
80617569 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
80617597 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
*
80617623 AAATTACCATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
80617645 GTTACTTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:80617788 original size:27 final size:27
Alignment explanation
Indices: 80617748--80617888 Score: 155
Period size: 27 Copynumber: 5.2 Consensus size: 27
80617738 AGGAAGCGTC
*
80617748 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
80617775 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
80617802 CTGGTGGCTAC-GCCACAATTATCTGAT
1 CTGGTGGCT-CTGCCACAATTATCTGAT
*
80617829 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* * * *
80617856 TTGGTGGCTCTACCATAA-TATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
80617883 CTGGTG
1 CTGGTG
80617889 ACTTCGTCAC
Statistics
Matches: 97, Mismatches: 10, Indels: 14
0.80 0.08 0.12
Matches are distributed among these distances:
26 10 0.10
27 83 0.86
28 4 0.04
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Done.