Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 236 of 297
Found at i:80617830 original size:54 final size:54
Alignment explanation
Indices: 80617748--80617864 Score: 216
Period size: 54 Copynumber: 2.2 Consensus size: 54
80617738 AGGAAGCGTC
*
80617748 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
80617802 CTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
80617856 TTGGTGGCT
1 CTGGTGGCT
80617865 CTACCATAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
54 61 1.00
ACGTcount: A:0.17, C:0.24, G:0.24, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTACGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:80617886 original size:81 final size:80
Alignment explanation
Indices: 80617748--80617906 Score: 196
Period size: 81 Copynumber: 2.0 Consensus size: 80
80617738 AGGAAGCGTC
* *
80617748 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCTAC
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTGGTGACTAC
80617813 GCCACAATTATCTGAT
66 GCCACAA-TATCTGAT
* * * * *
80617829 CTGGTGGCTCTGCCAC-ATATATCTGTTTTGGTGGCTCTACCATA-ATATTTGTATCTGGTGACT
1 CTGGTGGCTATGCCACAAT-TATCTGATCTGGTGGCTCTACCACATATATCTGT-TCTGGTGACT
* *
80617892 TCGTCACAATATCTG
64 ACGCCACAATATCTG
80617907 GCAGCCTCGC
Statistics
Matches: 67, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
80 15 0.22
81 52 0.78
ACGTcount: A:0.19, C:0.23, G:0.21, T:0.36
Consensus pattern (80 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTGGTGACTAC
GCCACAATATCTGAT
Found at i:80635345 original size:15 final size:15
Alignment explanation
Indices: 80635309--80635358 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 15
80635299 CAATATTCTT
80635309 TTTGCAT-TCATGCA
1 TTTGCATCTCATGCA
80635323 TTTGCATCTCATAGCA
1 TTTGCATCTCAT-GCA
*
80635339 TTT-CATCACAT-CA
1 TTTGCATCTCATGCA
80635352 TTTGCAT
1 TTTGCAT
80635359 TCAAAGTTAT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.31
15 11 0.34
16 6 0.19
ACGTcount: A:0.24, C:0.24, G:0.10, T:0.42
Consensus pattern (15 bp):
TTTGCATCTCATGCA
Found at i:80643803 original size:120 final size:119
Alignment explanation
Indices: 80643386--80643831 Score: 622
Period size: 119 Copynumber: 3.7 Consensus size: 119
80643376 AATTAGACTG
* * * * *
80643386 AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTACAAGGAACAAATCGAGGACATACCAGATT
1 AAGCAGATCCAAGATGATTTGATATTCTTATGTTTACAAGAAACAAATCAAGGACATAGCAGATT
* * * * *
80643451 TGACTCTCAGACGTTCTCAGATATAGCAGATCTAACCTTCAGATGTTTATACTG
66 TGACTCTCAGATGTTCTCAAACATAGCAGATCTAGCCTTCAGATGTTTATACTA
* * * *
80643505 AAGCAGATCCAAGATGATTTGGTATTCTTGTGTTTATAAGAAACAAATCGAGGACATAGCAGATT
1 AAGCAGATCCAAGATGATTTGATATTCTTATGTTTACAAGAAACAAATCAAGGACATAGCAGATT
* * * * *
80643570 TGACTTTTAGATGTTCTCAAATATAGCGGATCTAGCTTTCAGATGTTTATACTA
66 TGACTCTCAGATGTTCTCAAACATAGCAGATCTAGCCTTCAGATGTTTATACTA
* * *
80643624 AAGCAGATCCAAGATGATTTGATATTCTTATGTTTACAAGGAACAAATTAAGGACATAGCAAATT
1 AAGCAGATCCAAGATGATTTGATATTCTTATGTTTACAAGAAACAAATCAAGGACATAGCAGATT
* * *
80643689 TGACTCTTAGATGTTCTCAAACATGGCAGATCTAGCCTTCAGAGGTTTATACTA
66 TGACTCTCAGATGTTCTCAAACATAGCAGATCTAGCCTTCAGATGTTTATACTA
** * *
80643743 AATTAAGGTCCAAGATGATTTGACATTCTTATGTTTACAAGAAACAAATCAAGGACATAGCAGAT
1 AA-GCAGATCCAAGATGATTTGATATTCTTATGTTTACAAGAAACAAATCAAGGACATAGCAGAT
80643808 TTGACTCTCAGATGTTCTCAAACA
65 TTGACTCTCAGATGTTCTCAAACA
80643832 GACTCAAGAT
Statistics
Matches: 294, Mismatches: 32, Indels: 1
0.90 0.10 0.00
Matches are distributed among these distances:
119 216 0.73
120 78 0.27
ACGTcount: A:0.34, C:0.16, G:0.18, T:0.31
Consensus pattern (119 bp):
AAGCAGATCCAAGATGATTTGATATTCTTATGTTTACAAGAAACAAATCAAGGACATAGCAGATT
TGACTCTCAGATGTTCTCAAACATAGCAGATCTAGCCTTCAGATGTTTATACTA
Found at i:80644651 original size:217 final size:216
Alignment explanation
Indices: 80644261--80644688 Score: 802
Period size: 217 Copynumber: 2.0 Consensus size: 216
80644251 AATGAATTAT
*
80644261 TATTTAACAGTCCATAAAGTCCAGCTTACAAGAGTCCAAATATACATCCAAATAGCCCTACCAGT
1 TATTTAACAGTCCATAAAGTCCAGCTTACAAGAGTCCAAATATACATCCAAATAGCCCTAACAGT
*
80644326 TGCAACCCAAACAAACCCAATACACCGAGGCCCAATACTACCCAGTAGACTCAATTAAAAAGGGG
66 TGCAACCCAAACAAACCCAATACACCGAGGCCCAATACTACCCAGCAGACTCAATTAAAAAGGGG
80644391 CCCAATTGACCCAAACTCTCAGAGGCCCAAAACCTAAAATCATCAGCTAGGGTTTCTAACCCTAG
131 CCCAATTGACCCAAACTCTCAGAGGCCCAAAACCTAAAATCATCAGCTAGGGTTTCTAACCCTAG
*
80644456 CTCTCTCCCTCGCGCCACAAC
196 CTCTCTCCCTCACGCCACAAC
80644477 TATTTAACAGTCCATAAAGTCCAGCTTACAAGAGTCCAAATATACATCCAAATAGCCCTAACAGT
1 TATTTAACAGTCCATAAAGTCCAGCTTACAAGAGTCCAAATATACATCCAAATAGCCCTAACAGT
*
80644542 TGCAACCCAAACAAACCCATTACACCCGAGGCCCAATACTACCCAGCAGACTCAATTAAAAAGGG
66 TGCAACCCAAACAAACCCAATACA-CCGAGGCCCAATACTACCCAGCAGACTCAATTAAAAAGGG
*
80644607 GCCCAATTGACCCAAACTCTTAGAGGCCCAAAACCTAAAATCATCAGCTAGGGTTTCTAACCCTA
130 GCCCAATTGACCCAAACTCTCAGAGGCCCAAAACCTAAAATCATCAGCTAGGGTTTCTAACCCTA
80644672 GCTCTCTCCCTCACGCC
195 GCTCTCTCCCTCACGCC
80644689 GCAATTGCTT
Statistics
Matches: 206, Mismatches: 5, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
216 87 0.42
217 119 0.58
ACGTcount: A:0.36, C:0.32, G:0.13, T:0.19
Consensus pattern (216 bp):
TATTTAACAGTCCATAAAGTCCAGCTTACAAGAGTCCAAATATACATCCAAATAGCCCTAACAGT
TGCAACCCAAACAAACCCAATACACCGAGGCCCAATACTACCCAGCAGACTCAATTAAAAAGGGG
CCCAATTGACCCAAACTCTCAGAGGCCCAAAACCTAAAATCATCAGCTAGGGTTTCTAACCCTAG
CTCTCTCCCTCACGCCACAAC
Found at i:80645604 original size:447 final size:446
Alignment explanation
Indices: 80644718--80645610 Score: 1635
Period size: 447 Copynumber: 2.0 Consensus size: 446
80644708 TCGGGGAGCG
*
80644718 TCTGTCCAGCTCCCCAATCAAGGCCACCATTCAGGGTTCTGCCTCCGTAATCAGCACCCCATCGA
1 TCTGTCCAGCTCCCCAATCAAGGCCACCATTCAGGGTTCTGCCTCCGTAATCAGCACCCCACCGA
*
80644783 CACCACCACCAGACTACAGGCCTCCATCAACACCAGCAACCCTTCCATCGCCGGATTTTCCGCAA
66 CACCACCACCAGACTACAGGCCTCCATCAACACCAGCAACCCTTCCATCGCCGGATTTTCCACAA
*
80644848 GCACCAGCAAAAGAGGGAAAGAACCACAACAGCAAGCAAAGCAAATATGGAAAGATATAAAAAGA
131 GCACCAGCAAAAGAGGGAAAGAACCACAACAACAAGCAAAGCAAATATGGAAAGATATAAAAAGA
* *
80644913 TTTCTTTCCTAAATTTTGTAATAAATAGTGGCTATAAAAGCCCGAATCAAACCATTGTAAAAGGA
196 TTTCTTTCCTAAATTTTATAATAAACAGTGGCTATAAAAGCCCGAATCAAACCATTGTAAAAGGA
*
80644978 CCGATTTTTGAAGAGCATAGAAATACATACTTACAGATACTTATTCAGAAAGATACAAATAGTTT
261 CCGATTTTTGAAGAGCATAGAAATACATACTTACAGATACTTATTCAGAAAGATACAAACAGTTT
* *
80645043 CAGAAAAGGTGATTTAACCGTGTATTTTTTATTATTTTTGTAATATATACATGTATATAAACTGT
326 CAGAAAAGGTGATTTAACAGTGTATTTTTTATTATTTTTGTAATATATACATATATATAAACTGT
80645108 TTTAGAAAAAAATATAGATTACAAAAAAAATAAAAGGAAGGAAGTTACCTGACGAA
391 TTTAGAAAAAAATATAGATTACAAAAAAAATAAAAGGAAGGAAGTTACCTGACGAA
80645164 TCTGTCCAGCTCCCCAATCAAGGCCACCATTCAGGGTTCTGCCTCCGTAATCAGCACCCCACCGA
1 TCTGTCCAGCTCCCCAATCAAGGCCACCATTCAGGGTTCTGCCTCCGTAATCAGCACCCCACCGA
* *
80645229 CACCACCACCAGACTGCAGGCCTCCATCAACGCCAGCAACCCTTCCATCGCCGGATTTTCCACAA
66 CACCACCACCAGACTACAGGCCTCCATCAACACCAGCAACCCTTCCATCGCCGGATTTTCCACAA
* *
80645294 GCACCTGCAAAAGAGGGAAAGAACCACAGCAACAAGCAAAGCAAATATGGAAAGATATAAAAAGA
131 GCACCAGCAAAAGAGGGAAAGAACCACAACAACAAGCAAAGCAAATATGGAAAGATATAAAAAGA
* *
80645359 TTTCTTTCCTAAATTTTTATAATAAACAGTGGCTATAAAAGCCTGAATCAAACCATTGTAAAGGG
196 TTTCTTTCCTAAA-TTTTATAATAAACAGTGGCTATAAAAGCCCGAATCAAACCATTGTAAAAGG
80645424 ACCGATTTTTGAAGAGCATAGAAATACATACTTACAGATACTTATTCAGAAAGATACAAACAGTT
260 ACCGATTTTTGAAGAGCATAGAAATACATACTTACAGATACTTATTCAGAAAGATACAAACAGTT
80645489 TCAGAAAAGGTGATTTAACAGTGTATTTTTTATTATTTTTGTAATATATACATATATATAAACTG
325 TCAGAAAAGGTGATTTAACAGTGTATTTTTTATTATTTTTGTAATATATACATATATATAAACTG
80645554 TTTTAGCAAAAAAATATAGATTAC-AAAAAAATAAAAGGAAGGAAGTTACCTGACGAA
390 TTTTAG-AAAAAAATATAGATTACAAAAAAAATAAAAGGAAGGAAGTTACCTGACGAA
80645611 CGACGAGTGA
Statistics
Matches: 431, Mismatches: 14, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
446 201 0.47
447 213 0.49
448 17 0.04
ACGTcount: A:0.39, C:0.21, G:0.15, T:0.24
Consensus pattern (446 bp):
TCTGTCCAGCTCCCCAATCAAGGCCACCATTCAGGGTTCTGCCTCCGTAATCAGCACCCCACCGA
CACCACCACCAGACTACAGGCCTCCATCAACACCAGCAACCCTTCCATCGCCGGATTTTCCACAA
GCACCAGCAAAAGAGGGAAAGAACCACAACAACAAGCAAAGCAAATATGGAAAGATATAAAAAGA
TTTCTTTCCTAAATTTTATAATAAACAGTGGCTATAAAAGCCCGAATCAAACCATTGTAAAAGGA
CCGATTTTTGAAGAGCATAGAAATACATACTTACAGATACTTATTCAGAAAGATACAAACAGTTT
CAGAAAAGGTGATTTAACAGTGTATTTTTTATTATTTTTGTAATATATACATATATATAAACTGT
TTTAGAAAAAAATATAGATTACAAAAAAAATAAAAGGAAGGAAGTTACCTGACGAA
Found at i:80653464 original size:47 final size:47
Alignment explanation
Indices: 80652531--80653429 Score: 1726
Period size: 47 Copynumber: 19.1 Consensus size: 47
80652521 GATTTTATGA
*
80652531 GATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652578 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652625 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652672 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652719 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652766 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652813 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652860 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652907 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80652954 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653001 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653048 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653095 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653142 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653189 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653236 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653283 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
* ** *
80653330 GATGAATGTGAACTTGCATATGTGTGATAAGGCCGAATGGCCAAAGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
* **
80653377 GATGAATGTGAACATGCATATATGTGATAAGGTAGAATGGCCAATGT
1 GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
80653424 GATGAA
1 GATGAA
80653430 CGTGGAAGTG
Statistics
Matches: 842, Mismatches: 10, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 842 1.00
ACGTcount: A:0.34, C:0.14, G:0.28, T:0.24
Consensus pattern (47 bp):
GATGAATGTGAACATGCATATACGTGATAAGGCCGAATGGCCAATGT
Found at i:80653509 original size:46 final size:46
Alignment explanation
Indices: 80653457--80653630 Score: 269
Period size: 46 Copynumber: 3.8 Consensus size: 46
80653447 GTGGCGAAGC
*
80653457 CGAATGGCTAATGCGAAATGTGTATGAGATGGATATGAGGTAAAGT
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
*
80653503 CAAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAG-
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
80653548 CTGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
1 C-GAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
* * ** *
80653595 CGAATGGCTAATGTGAGATATGTATGAGATGTATAT
1 CGAATGGCTAATGCGAAACGTGTATGAGATGGATAT
80653631 ATATATTGTG
Statistics
Matches: 118, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
45 1 0.01
46 116 0.98
47 1 0.01
ACGTcount: A:0.35, C:0.07, G:0.31, T:0.26
Consensus pattern (46 bp):
CGAATGGCTAATGCGAAACGTGTATGAGATGGATATGAGGTAAAGT
Found at i:80660009 original size:17 final size:17
Alignment explanation
Indices: 80659987--80660021 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
80659977 ATGCTGTATG
80659987 ATAGCCTAGAATATTTA
1 ATAGCCTAGAATATTTA
80660004 ATAGCCTAGAATATTTA
1 ATAGCCTAGAATATTTA
80660021 A
1 A
80660022 ATAAATTATC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.43, C:0.11, G:0.11, T:0.34
Consensus pattern (17 bp):
ATAGCCTAGAATATTTA
Found at i:80660475 original size:24 final size:24
Alignment explanation
Indices: 80660440--80660502 Score: 81
Period size: 24 Copynumber: 2.6 Consensus size: 24
80660430 AATCGTTCTG
*
80660440 TGCAAAGAATGAATTGACGATAAA
1 TGCAAAGGATGAATTGACGATAAA
* *
80660464 TGCAAAGGATGAATTGATGGTAAA
1 TGCAAAGGATGAATTGACGATAAA
* *
80660488 TTCAAAGGATTAATT
1 TGCAAAGGATGAATT
80660503 TATGACATAT
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.44, C:0.06, G:0.22, T:0.27
Consensus pattern (24 bp):
TGCAAAGGATGAATTGACGATAAA
Found at i:80666506 original size:19 final size:19
Alignment explanation
Indices: 80666482--80666536 Score: 54
Period size: 19 Copynumber: 3.3 Consensus size: 19
80666472 TTAGATTAAA
80666482 AAATAACTCATAATTATCT
1 AAATAACTCATAATTATCT
80666501 AAAT-A---A-AATTA---
1 AAATAACTCATAATTATCT
80666512 AAATAACTCATAATTATCT
1 AAATAACTCATAATTATCT
80666531 AAATAA
1 AAATAA
80666537 AATTAACTCA
Statistics
Matches: 28, Mismatches: 0, Indels: 16
0.64 0.00 0.36
Matches are distributed among these distances:
11 4 0.14
12 1 0.04
14 5 0.18
15 2 0.07
16 5 0.18
18 1 0.04
19 10 0.36
ACGTcount: A:0.56, C:0.11, G:0.00, T:0.33
Consensus pattern (19 bp):
AAATAACTCATAATTATCT
Found at i:80666517 original size:30 final size:30
Alignment explanation
Indices: 80666481--80666542 Score: 124
Period size: 30 Copynumber: 2.1 Consensus size: 30
80666471 ATTAGATTAA
80666481 AAAATAACTCATAATTATCTAAATAAAATT
1 AAAATAACTCATAATTATCTAAATAAAATT
80666511 AAAATAACTCATAATTATCTAAATAAAATT
1 AAAATAACTCATAATTATCTAAATAAAATT
80666541 AA
1 AA
80666543 CTCAGTAGAA
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 32 1.00
ACGTcount: A:0.58, C:0.10, G:0.00, T:0.32
Consensus pattern (30 bp):
AAAATAACTCATAATTATCTAAATAAAATT
Found at i:80667226 original size:71 final size:71
Alignment explanation
Indices: 80667110--80667323 Score: 367
Period size: 71 Copynumber: 3.0 Consensus size: 71
80667100 TATAATATTT
80667110 TGTTGTGCATGTAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCTGACAAGTGTTG
1 TGTTGTGCATGTAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCTGACAAGTGTTG
80667175 GAGAAG
66 GAGAAG
80667181 TGTTGTGCATGTAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCTGACAAGTGTT-
1 TGTTGTGCATGTAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCTGACAAGTGTTG
* * **
80667245 AATATTT
66 GAGA-AG
*
80667252 TGTTGTGCATGTAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCTGAGAAGTGTTG
1 TGTTGTGCATGTAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCTGACAAGTGTTG
80667317 GAGAAG
66 GAGAAG
80667323 T
1 T
80667324 CCTAGGTTCA
Statistics
Matches: 132, Mismatches: 9, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
70 2 0.02
71 128 0.97
72 2 0.02
ACGTcount: A:0.24, C:0.07, G:0.29, T:0.40
Consensus pattern (71 bp):
TGTTGTGCATGTAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAGTGTGCTGACAAGTGTTG
GAGAAG
Found at i:80668071 original size:27 final size:26
Alignment explanation
Indices: 80668040--80668090 Score: 75
Period size: 27 Copynumber: 1.9 Consensus size: 26
80668030 GAATACTTTA
*
80668040 GTTTACCAAATTACTAAAATACCCTTG
1 GTTTACAAAATTACT-AAATACCCTTG
*
80668067 GTTTACAAAATTACTGAATACCCT
1 GTTTACAAAATTACTAAATACCCT
80668091 CGATTAGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
26 8 0.36
27 14 0.64
ACGTcount: A:0.37, C:0.22, G:0.08, T:0.33
Consensus pattern (26 bp):
GTTTACAAAATTACTAAATACCCTTG
Found at i:80668117 original size:27 final size:27
Alignment explanation
Indices: 80668047--80668278 Score: 191
Period size: 27 Copynumber: 8.6 Consensus size: 27
80668037 TTAGTTTACC
* * * **
80668047 AAATTACTAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
** * *
80668074 AAATTA-CTGAATACCCTCGATTAGAA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
80668100 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCGATTTGTA
*
80668127 AAATTACCAAAATA-CCTCTGGTTTGTA
1 AAATTACCAAAATACCCTC-GATTTGTA
*
80668154 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * * *
80668181 AAATTACCAAAATATCATTGATTTGTG
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
80668208 AAATTACTAAAATACCCTCAACCTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
** * *
80668235 AAATTACTGAAATACCCTCAACTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
80668262 AAATTACCAAAGTACCC
1 AAATTACCAAAATACCC
80668279 CCAATTTACA
Statistics
Matches: 166, Mismatches: 34, Indels: 10
0.79 0.16 0.05
Matches are distributed among these distances:
26 22 0.13
27 141 0.85
28 3 0.02
ACGTcount: A:0.42, C:0.21, G:0.08, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:80668347 original size:27 final size:27
Alignment explanation
Indices: 80668317--80668458 Score: 131
Period size: 27 Copynumber: 5.3 Consensus size: 27
80668307 CGATTTACAA
* **
80668317 AATTACCGAAATATCATTATAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
** *
80668344 AATTATTGAAATACCCCTATAGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
* *
80668371 AATTACCGAAATACCCTTTTAGGGTAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * *
80668398 AAATATCGAAATACCCCTGTAGGATAG
1 AATTACCGAAATACCCCTATAGGGTAG
* * * * *
80668425 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACCGAAATACCCCTATAGGGTAG
80668452 AATTACC
1 AATTACC
80668459 ATTTTGCCCC
Statistics
Matches: 92, Mismatches: 23, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 92 1.00
ACGTcount: A:0.37, C:0.17, G:0.18, T:0.27
Consensus pattern (27 bp):
AATTACCGAAATACCCCTATAGGGTAG
Found at i:80668440 original size:54 final size:54
Alignment explanation
Indices: 80668315--80668442 Score: 175
Period size: 54 Copynumber: 2.4 Consensus size: 54
80668305 CTCGATTTAC
* * * * *
80668315 AAAATTACCGAAATATCATTATAGGGTAGAATTATTGAAATACCCCTATAGGGT
1 AAAATTACCGAAATACCCTTATAGGGTAGAAATATCGAAATACCCCTATAGGAT
* *
80668369 AAAATTACCGAAATACCCTTTTAGGGTAGAAATATCGAAATACCCCTGTAGGAT
1 AAAATTACCGAAATACCCTTATAGGGTAGAAATATCGAAATACCCCTATAGGAT
* *
80668423 AGAATTACCGAGATACCCTT
1 AAAATTACCGAAATACCCTT
80668443 GTGGGGTAAA
Statistics
Matches: 65, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 65 1.00
ACGTcount: A:0.39, C:0.17, G:0.16, T:0.27
Consensus pattern (54 bp):
AAAATTACCGAAATACCCTTATAGGGTAGAAATATCGAAATACCCCTATAGGAT
Found at i:80668885 original size:22 final size:22
Alignment explanation
Indices: 80668833--80668895 Score: 74
Period size: 22 Copynumber: 2.9 Consensus size: 22
80668823 GCCAATTATT
* *
80668833 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
80668855 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
*
80668877 CTGATTATGGCTGTGTGCC
1 CTGATTATGGCTCTGTGCC
80668896 TAACGTATTT
Statistics
Matches: 34, Mismatches: 5, Indels: 4
0.79 0.12 0.09
Matches are distributed among these distances:
21 1 0.03
22 32 0.94
23 1 0.03
ACGTcount: A:0.17, C:0.27, G:0.24, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:80669086 original size:27 final size:26
Alignment explanation
Indices: 80669056--80669163 Score: 144
Period size: 27 Copynumber: 4.0 Consensus size: 26
80669046 ATTCTGTTAA
*
80669056 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTG-TTCTG
* *
80669083 GTGGCTATGCCACAAATACCTGTTCTG
1 GTGGCTTTGCCAC-AATATCTGTTCTG
80669110 GTGGCTTTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGT-TCTG
* *
80669137 GTGACTTTGTCACAATATCTGTTCTG
1 GTGGCTTTGCCACAATATCTGTTCTG
80669163 G
1 G
80669164 CAGCCATACT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
26 13 0.18
27 53 0.74
28 6 0.08
ACGTcount: A:0.18, C:0.22, G:0.22, T:0.38
Consensus pattern (26 bp):
GTGGCTTTGCCACAATATCTGTTCTG
Found at i:80669366 original size:25 final size:25
Alignment explanation
Indices: 80669281--80669354 Score: 85
Period size: 25 Copynumber: 3.0 Consensus size: 25
80669271 TTGCATTCAC
* * * *
80669281 ATTCTGATTCTAATTCTGTTACCTA
1 ATTCTAATTCTGATCCTGTCACCTA
* **
80669306 ATACTAATTCTGATTTTGTCACCTA
1 ATTCTAATTCTGATCCTGTCACCTA
80669331 ATTCTAATTCTGATCCTGTCACCT
1 ATTCTAATTCTGATCCTGTCACCT
80669355 GATTTTGATT
Statistics
Matches: 41, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.24, C:0.23, G:0.08, T:0.45
Consensus pattern (25 bp):
ATTCTAATTCTGATCCTGTCACCTA
Found at i:80671402 original size:27 final size:27
Alignment explanation
Indices: 80671371--80671433 Score: 90
Period size: 27 Copynumber: 2.3 Consensus size: 27
80671361 TTAGTTTACC
**
80671371 AAATTACTGAAATACCCTCAATTAGAA
1 AAATTACCAAAATACCCTCAATTAGAA
* *
80671398 AAATTACCAAAATACCCTCGATTAGCA
1 AAATTACCAAAATACCCTCAATTAGAA
80671425 AAATTACCA
1 AAATTACCA
80671434 TTTTGCCCCT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 32 1.00
ACGTcount: A:0.48, C:0.22, G:0.06, T:0.24
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTAGAA
Found at i:80671861 original size:22 final size:22
Alignment explanation
Indices: 80671809--80671873 Score: 87
Period size: 22 Copynumber: 3.0 Consensus size: 22
80671799 GCCAATTATT
80671809 CTGATTATGGCTCTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
*
80671831 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTCTGTGCCAAC
* *
80671853 CTGATTATGGATGTGTGCCAA
1 CTGATTATGGCTCTGTGCCAA
80671874 ACGTATTTAC
Statistics
Matches: 37, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 35 0.95
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.23, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:80672062 original size:27 final size:26
Alignment explanation
Indices: 80672032--80672139 Score: 153
Period size: 27 Copynumber: 4.0 Consensus size: 26
80672022 ATTCTGTTAA
* *
80672032 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTG-TTCTG
*
80672059 GTGGCTATGCCACAAATATCTGTTCTG
1 GTGGCTCTGCCAC-AATATCTGTTCTG
80672086 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGT-TCTG
*
80672113 GTGACTCTGCCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTGTTCTG
80672139 G
1 G
80672140 CAGTTATGCT
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
26 14 0.19
27 54 0.72
28 7 0.09
ACGTcount: A:0.18, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTGTTCTG
Found at i:80672160 original size:53 final size:54
Alignment explanation
Indices: 80672039--80672153 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
80672029 TAAGTGGCTT
* * * ** *
80672039 TGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCTGGTGGCTC
1 TGCCACAATATCTGTATCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTA
* *
80672093 TGCCACAATATCTGTATCTGGTGACTCTGCCAC-AATATCTGTTCTGGCAGTTA
1 TGCCACAATATCTGTATCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTA
*
80672146 TGCTACAA
1 TGCCACAA
80672154 ATTCTGTGGT
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
53 23 0.44
54 29 0.56
ACGTcount: A:0.21, C:0.24, G:0.20, T:0.35
Consensus pattern (54 bp):
TGCCACAATATCTGTATCTGGTGACTATGCCACAAATATCTGTTCTGGCAGCTA
Found at i:80672266 original size:6 final size:6
Alignment explanation
Indices: 80672257--80672344 Score: 56
Period size: 6 Copynumber: 14.3 Consensus size: 6
80672247 TTGCATTCAC
* * * *
80672257 ATTCTG ATTCTA ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
* *
80672307 ATTCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
80672345 AATGTTTCTT
Statistics
Matches: 62, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
5 4 0.06
6 50 0.81
7 6 0.10
8 2 0.03
ACGTcount: A:0.20, C:0.19, G:0.12, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:80672288 original size:25 final size:25
Alignment explanation
Indices: 80672260--80672323 Score: 92
Period size: 25 Copynumber: 2.6 Consensus size: 25
80672250 CATTCACATT
* * *
80672260 CTGATTCTAATTCTGTTACCTGATA
1 CTGATTCTGATTCTGTCACCTAATA
*
80672285 CTGATTCTGATTCTGTCACCTAATT
1 CTGATTCTGATTCTGTCACCTAATA
80672310 CTGATTCTGATTCT
1 CTGATTCTGATTCT
80672324 CATTTTGATT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 35 1.00
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (25 bp):
CTGATTCTGATTCTGTCACCTAATA
Found at i:80675106 original size:26 final size:26
Alignment explanation
Indices: 80675077--80675184 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80675067 TGGTACAAAT
80675077 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80675103 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80675129 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80675155 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80675181 TGAT
1 TGAT
80675185 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80676460 original size:28 final size:26
Alignment explanation
Indices: 80676429--80676492 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
80676419 AATTACTTGA
* **
80676429 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
80676457 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
80676483 ATACCCCTAG
1 ATACCCCTAG
80676493 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:80676646 original size:27 final size:27
Alignment explanation
Indices: 80676600--80676737 Score: 158
Period size: 27 Copynumber: 5.1 Consensus size: 27
80676590 AAGCATCCTA
* *
80676600 GTGGCTATGCCACA-ATTATCCGATCTG
1 GTGGCTCTGCCACATA-TATCTGATCTG
*
80676627 GTTGCTCTGCCACATATATCT-ATTCTG
1 GTGGCTCTGCCACATATATCTGA-TCTG
*
80676654 GTGGCTATGCCACGAT-TATCTGATCTG
1 GTGGCTCTGCCAC-ATATATCTGATCTG
* *
80676681 GTGGCTCTACCACATATATCTGTTCTG
1 GTGGCTCTGCCACATATATCTGATCTG
80676708 GTGGCTCTGCCACA-ATATCTGTATCTG
1 GTGGCTCTGCCACATATATCTG-ATCTG
80676735 GTG
1 GTG
80676738 ACTTCGTCAC
Statistics
Matches: 95, Mismatches: 10, Indels: 12
0.81 0.09 0.10
Matches are distributed among these distances:
26 10 0.11
27 81 0.85
28 4 0.04
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACATATATCTGATCTG
Found at i:80676682 original size:54 final size:53
Alignment explanation
Indices: 80676600--80676737 Score: 195
Period size: 54 Copynumber: 2.5 Consensus size: 53
80676590 AAGCATCCTA
* * *
80676600 GTGGCTATGCCACAATTATCCGATCTGGTTGCTCTGCCACATATATCTATTCTG
1 GTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTATTCTG
*
80676654 GTGGCTATGCCACGATTATCTGATCTGGTGGCTCTACCACATATATCTGTTCTG
1 GTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTATTCTG
* *
80676708 GTGGCTCTGCCACAATATCTGTATCTGGTG
1 GTGGCTATGCCACATTATCTG-ATCTGGTG
80676738 ACTTCGTCAC
Statistics
Matches: 76, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
53 7 0.09
54 69 0.91
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (53 bp):
GTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTATTCTG
Found at i:80676748 original size:27 final size:26
Alignment explanation
Indices: 80676607--80676755 Score: 122
Period size: 27 Copynumber: 5.5 Consensus size: 26
80676597 CTAGTGGCTA
* *
80676607 TGCCACAATTATCCGATCTGGTTG-CTC
1 TGCCACAA-TATCTGTTCTGG-TGACTC
* * *
80676634 TGCCACATATATCTATTCTGGTGGCTA
1 TGCCACA-ATATCTGTTCTGGTGACTC
* * *
80676661 TGCCACGATTATCTGATCTGGTGGCTC
1 TGCCAC-AATATCTGTTCTGGTGACTC
* *
80676688 TACCACATATATCTGTTCTGGTGGCTC
1 TGCCACA-ATATCTGTTCTGGTGACTC
80676715 TGCCACAATATCTGTATCTGGTGACT-
1 TGCCACAATATCTGT-TCTGGTGACTC
*
80676741 TCGTCACAATATCTG
1 T-GCCACAATATCTG
80676756 GCAGCCTCGC
Statistics
Matches: 102, Mismatches: 14, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
26 12 0.12
27 88 0.86
28 2 0.02
ACGTcount: A:0.20, C:0.26, G:0.19, T:0.35
Consensus pattern (26 bp):
TGCCACAATATCTGTTCTGGTGACTC
Found at i:80681973 original size:26 final size:26
Alignment explanation
Indices: 80681944--80682051 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
80681934 TGGTACAAAT
80681944 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
80681970 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80681996 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
80682022 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80682048 TGAT
1 TGAT
80682052 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80683515 original size:28 final size:26
Alignment explanation
Indices: 80683484--80683547 Score: 74
Period size: 26 Copynumber: 2.4 Consensus size: 26
80683474 AATTACTTGA
* **
80683484 ATACCCCTATGTATGGAAAATTACTGTT
1 ATACCCCTA-G-ATGCAAAATTACCATT
*
80683512 ATACCCCTAGGTGCAAAATTACCATT
1 ATACCCCTAGATGCAAAATTACCATT
80683538 ATACCCCTAG
1 ATACCCCTAG
80683548 GGTTACTTTT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 22 0.69
27 1 0.03
28 9 0.28
ACGTcount: A:0.33, C:0.25, G:0.12, T:0.30
Consensus pattern (26 bp):
ATACCCCTAGATGCAAAATTACCATT
Found at i:80683728 original size:27 final size:26
Alignment explanation
Indices: 80683652--80683764 Score: 131
Period size: 27 Copynumber: 4.2 Consensus size: 26
80683642 AGGAAGCGTC
80683652 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
80683679 CTGGTTGCTCA--CCACATATATCTGTT
1 CTGGTGGCT-ATGCCACAT-TATCTGAT
80683705 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
80683732 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACATTATCTG-AT
80683759 CTGGTG
1 CTGGTG
80683765 ACTTCGTCAC
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
25 3 0.04
26 26 0.35
27 42 0.57
28 3 0.04
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:80683732 original size:53 final size:54
Alignment explanation
Indices: 80683652--80683764 Score: 176
Period size: 53 Copynumber: 2.1 Consensus size: 54
80683642 AGGAAGCGTC
*
80683652 CTGGTGGCTATGCCACAATTATCTGATCTGGTTGCTC-ACCACATATATCTGT-T
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACA-ATATCTGTAT
* *
80683705 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACAATATCTGTAT
80683759 CTGGTG
1 CTGGTG
80683765 ACTTCGTCAC
Statistics
Matches: 55, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
53 43 0.78
54 12 0.22
ACGTcount: A:0.19, C:0.24, G:0.23, T:0.35
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTACCACAATATCTGTAT
Found at i:80683775 original size:27 final size:26
Alignment explanation
Indices: 80683652--80683782 Score: 106
Period size: 27 Copynumber: 4.9 Consensus size: 26
80683642 AGGAAGCGTC
* *
80683652 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGACTCTGCCACAA-TATCTGAT
* *
80683679 CTGGTTG-CTC-ACCACATATATCTGTT
1 CTGG-TGACTCTGCCACA-ATATCTGAT
* * *
80683705 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGACTCTGCCAC-AATATCTGAT
*
80683732 CTGGTGGCTCTGCCACAATATCTGTAT
1 CTGGTGACTCTGCCACAATATCTG-AT
*
80683759 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTCT-GCCACAATATCTG
80683783 GTAGCCTCGC
Statistics
Matches: 86, Mismatches: 11, Indels: 14
0.77 0.10 0.13
Matches are distributed among these distances:
25 2 0.02
26 26 0.30
27 55 0.64
28 3 0.03
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (26 bp):
CTGGTGACTCTGCCACAATATCTGAT
Found at i:80683781 original size:53 final size:52
Alignment explanation
Indices: 80683652--80683782 Score: 149
Period size: 53 Copynumber: 2.5 Consensus size: 52
80683642 AGGAAGCGTC
* *
80683652 CTGGTGGCTATGCCACAATTATCTGATCTGGTTGCTCACCACATATATCTGTT
1 CTGGTGACTATGCCACAA-TATCTGATCTGGTGGCTCACCACATATATCTGTT
* * *
80683705 CTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACA-ATATCTGTAT
1 CTGGTGACTATGCCAC-AATATCTGATCTGGTGGCTC-ACCACATATATCTGT-T
*
80683759 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGACTAT-GCCACAATATCTG
80683783 GTAGCCTCGC
Statistics
Matches: 68, Mismatches: 6, Indels: 8
0.83 0.07 0.10
Matches are distributed among these distances:
53 49 0.72
54 19 0.28
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.34
Consensus pattern (52 bp):
CTGGTGACTATGCCACAATATCTGATCTGGTGGCTCACCACATATATCTGTT
Found at i:80684906 original size:19 final size:19
Alignment explanation
Indices: 80684861--80684907 Score: 51
Period size: 19 Copynumber: 2.5 Consensus size: 19
80684851 ATCAAATTAA
*
80684861 AATAAAAATAAAAATATAG
1 AATAAAAATAAAAATAAAG
* *
80684880 AATCAAAACT-AAAATAAAT
1 AAT-AAAAATAAAAATAAAG
80684899 AATAAAAAT
1 AATAAAAAT
80684908 TAGATTAAAT
Statistics
Matches: 23, Mismatches: 4, Indels: 3
0.77 0.13 0.10
Matches are distributed among these distances:
18 5 0.22
19 13 0.57
20 5 0.22
ACGTcount: A:0.72, C:0.04, G:0.02, T:0.21
Consensus pattern (19 bp):
AATAAAAATAAAAATAAAG
Found at i:80687428 original size:81 final size:81
Alignment explanation
Indices: 80687293--80687443 Score: 198
Period size: 81 Copynumber: 1.9 Consensus size: 81
80687283 ATTCTGAAGT
* * * * * * *
80687293 CAACAGCCAAGATACACAAGCATGTGATAAACATCTGCAAAATTTTCCCACTGAAAATTTATTAC
1 CAACAGCCAAGATACACAAGCAAGTGACAAAAATATGCAAAATATTCCCACTGAAAATCTATCAC
80687358 AAATTAAACAATGTAC
66 AAATTAAACAATGTAC
*
80687374 CAACAGCCAAGATACACAAGTAAGTGACAAAGAATAT-CAATAA-ATTCCCACTGAAAATCTATC
1 CAACAGCCAAGATACACAAGCAAGTGACAAA-AATATGCAA-AATATTCCCACTGAAAATCTATC
80687437 ACAAATT
64 ACAAATT
80687444 CAAAAAGGTA
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
81 55 0.92
82 5 0.08
ACGTcount: A:0.46, C:0.21, G:0.10, T:0.23
Consensus pattern (81 bp):
CAACAGCCAAGATACACAAGCAAGTGACAAAAATATGCAAAATATTCCCACTGAAAATCTATCAC
AAATTAAACAATGTAC
Found at i:80689545 original size:14 final size:14
Alignment explanation
Indices: 80689526--80689552 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
80689516 ATTATTTTTA
80689526 TTTTTATAAATTAG
1 TTTTTATAAATTAG
80689540 TTTTTATAAATTA
1 TTTTTATAAATTA
80689553 AAAATGAAGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.37, C:0.00, G:0.04, T:0.59
Consensus pattern (14 bp):
TTTTTATAAATTAG
Found at i:80690591 original size:41 final size:40
Alignment explanation
Indices: 80690473--80690607 Score: 162
Period size: 41 Copynumber: 3.3 Consensus size: 40
80690463 GTTACATGAC
* * *
80690473 TTTTAGTGGCGTTTTACCAAAAGCACCGCCAATGCTCTCGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCT-GT
* *
80690514 CTTTAGCGGCGTTTTACCAAAAGCGCCACTAATGCTCTGT
1 TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
* * * *
80690554 TTTTAGCGGCGTTTTAACAAAAACTGCCGCTATTGCTCAGT
1 TTTTAGCGGCGTTTTACCAAAAGC-GCCGCTAATGCTCTGT
*
80690595 TTTTAGCAGCGTT
1 TTTTAGCGGCGTT
80690608 GTCAAAATGC
Statistics
Matches: 81, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
40 23 0.28
41 58 0.72
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (40 bp):
TTTTAGCGGCGTTTTACCAAAAGCGCCGCTAATGCTCTGT
Found at i:80700562 original size:57 final size:55
Alignment explanation
Indices: 80700501--80700642 Score: 160
Period size: 57 Copynumber: 2.5 Consensus size: 55
80700491 TAGGTTATAT
* * * *
80700501 ATTATTTTTATAATATTTATATTAAGAATGTTATTAAATTATATATTATTTTATTAA
1 ATTATTTTTATAATAATTATATTAA-AATATGATTAAATTATATATT-TATTATTAA
* * *
80700558 ATTATTTTTAATAAAAATTATGTTAAAATATGATTAAATTATTTATTTATTATTAA
1 ATTATTTTT-ATAATAATTATATTAAAATATGATTAAATTATATATTTATTATTAA
*
80700614 ATTATATTTAATAATAATCT-TATTAAAAT
1 ATTAT-TTTTATAATAAT-TATATTAAAAT
80700643 TTAATAACAA
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
56 28 0.39
57 31 0.43
58 13 0.18
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.53
Consensus pattern (55 bp):
ATTATTTTTATAATAATTATATTAAAATATGATTAAATTATATATTTATTATTAA
Found at i:80700640 original size:56 final size:57
Alignment explanation
Indices: 80700517--80700642 Score: 157
Period size: 56 Copynumber: 2.2 Consensus size: 57
80700507 TTTATAATAT
* * * *
80700517 TTATATTAAGAATGTTATTAAATTATATATTATTTTATTAAATTATTTTTAATAAAAA
1 TTATATTAA-AATATGATTAAATTATATATTATATTATTAAATTATATTTAATAAAAA
* * *
80700575 TTATGTTAAAATATGATTAAATTATTTATT-TATTATTAAATTATATTTAATAATAA
1 TTATATTAAAATATGATTAAATTATATATTATATTATTAAATTATATTTAATAAAAA
80700631 TCT-TATTAAAAT
1 T-TATATTAAAAT
80700643 TTAATAACAA
Statistics
Matches: 59, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
56 32 0.54
57 19 0.32
58 8 0.14
ACGTcount: A:0.44, C:0.01, G:0.03, T:0.52
Consensus pattern (57 bp):
TTATATTAAAATATGATTAAATTATATATTATATTATTAAATTATATTTAATAAAAA
Found at i:80700662 original size:22 final size:22
Alignment explanation
Indices: 80700619--80700668 Score: 55
Period size: 22 Copynumber: 2.3 Consensus size: 22
80700609 ATTAAATTAT
* ** *
80700619 ATTTAATAATAATCTTATTAAA
1 ATTTAATAACAATAATAATAAA
80700641 ATTTAATAACAATAATAATAAA
1 ATTTAATAACAATAATAATAAA
*
80700663 AATTAA
1 ATTTAA
80700669 CTTAAAAAAA
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.58, C:0.04, G:0.00, T:0.38
Consensus pattern (22 bp):
ATTTAATAACAATAATAATAAA
Found at i:80709199 original size:39 final size:39
Alignment explanation
Indices: 80709035--80709217 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
80709025 TTGAATGCTG
* * * * * * *
80709035 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
80709075 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
80709115 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
80709155 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
80709194 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
80709218 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:80709237 original size:79 final size:80
Alignment explanation
Indices: 80709071--80709252 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
80709061 GCTAAGTGAA
* * * *
80709071 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
80709135 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
80709151 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
80709215 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
80709230 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
80709253 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:80722545 original size:47 final size:47
Alignment explanation
Indices: 80722494--80722622 Score: 161
Period size: 47 Copynumber: 2.7 Consensus size: 47
80722484 TTAGGATTCT
* * *
80722494 ATGTGATGGATGTGAACA-TGCATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGGATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
* * * *
80722541 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
* *
80722588 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGGATGTGAAAGTGTATATATGTGATAAG
80722623 TCCCGAAGGG
Statistics
Matches: 69, Mismatches: 12, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
46 1 0.01
47 68 0.99
ACGTcount: A:0.32, C:0.09, G:0.32, T:0.27
Consensus pattern (47 bp):
ATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCA
Found at i:80722797 original size:37 final size:37
Alignment explanation
Indices: 80722741--80722819 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
80722731 CCGAGCTCTA
* *
80722741 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
80722778 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
80722815 AAGAC
1 AAGAC
80722820 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:80728702 original size:36 final size:36
Alignment explanation
Indices: 80728654--80728723 Score: 122
Period size: 36 Copynumber: 1.9 Consensus size: 36
80728644 TTAGGGAAAC
*
80728654 ATAAAGCTAAAATATAACCATAAAAAAATTTAAAAT
1 ATAAAGCAAAAATATAACCATAAAAAAATTTAAAAT
*
80728690 ATAAAGCAAAAATATAACCATAAAAAATTTTAAA
1 ATAAAGCAAAAATATAACCATAAAAAAATTTAAA
80728724 CAAATTGAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.64, C:0.09, G:0.03, T:0.24
Consensus pattern (36 bp):
ATAAAGCAAAAATATAACCATAAAAAAATTTAAAAT
Found at i:80730749 original size:43 final size:43
Alignment explanation
Indices: 80730670--80730870 Score: 237
Period size: 43 Copynumber: 4.7 Consensus size: 43
80730660 CAATGTCATA
* * * *
80730670 TCCCAGATATGGTATTACATGCT-ATCAC-ATATCGATGCCAATG
1 TCCCAGACATGGTCTTACACG-TAATCACAATA-CAATGCCAATG
* ** * *
80730713 TCCTAGACATGGTCTTACACAAAATCA-TATAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAAT-ACAATGCCAATG
*
80730756 TCCTAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
*
80730799 TCCCAGACATGGTCTTACATGTAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
* *
80730842 TCCCAAACATGGTCTTACATGTAATCACA
1 TCCCAGACATGGTCTTACACGTAATCACA
80730871 TCTCGGTAAT
Statistics
Matches: 141, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
43 138 0.98
44 3 0.02
ACGTcount: A:0.34, C:0.25, G:0.14, T:0.27
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
Found at i:80733837 original size:48 final size:48
Alignment explanation
Indices: 80733777--80733995 Score: 176
Period size: 48 Copynumber: 4.6 Consensus size: 48
80733767 TGTGTGCTAA
* *
80733777 TGTAAGACCATGTGTGGGACATGGCATCAGACACATTATGTGAGCCAG
1 TGTAAGACCATGTTTGGGACATGGCATCAGACTCATTATGTGAGCCAG
* * * * *
80733825 TGTAAGACCATGTTT-GGACATGGCATCGGTATTGA-TATGTGTGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG-ACTCATTATGTGAGCCAG
* * * * * * * * *
80733872 TGTAAGACAATGTCTGGGACATGACATCAGCATTGA-GACGAGAGCTAG
1 TGTAAGACCATGTTTGGGACATGGCATCAG-ACTCATTATGTGAGCCAG
* ** * ***
80733920 TGTAAGACC-TCGTTTGGGATATGGCATTGGCCTCAACGTGTGAGCCAG
1 TGTAAGACCAT-GTTTGGGACATGGCATCAGACTCATTATGTGAGCCAG
80733968 TGTAAGACCATGTTTGGGACATGGCATC
1 TGTAAGACCATGTTTGGGACATGGCATC
80733996 GGCAATTTAC
Statistics
Matches: 134, Mismatches: 32, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
47 39 0.29
48 94 0.70
49 1 0.01
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
TGTAAGACCATGTTTGGGACATGGCATCAGACTCATTATGTGAGCCAG
Found at i:80733935 original size:95 final size:94
Alignment explanation
Indices: 80733761--80733946 Score: 216
Period size: 95 Copynumber: 1.9 Consensus size: 94
80733751 TGACATTTGG
* * * * *
80733761 TTGACATGTGTGCTAATGTAAGACCATGTGTGGGACATGGCATCAGACACATTATGTGAGCCAGT
1 TTGACATGTGTGCTAATGTAAGACAATGTCTGGGACATGACATCAG--ACATTACGAGAGCCAGT
80733826 GTAAGACCATGTTT-GGACATGGCATCGGTA
64 GTAAGACCATGTTTGGGACATGGCATCGGTA
* * *
80733856 TTGATATGTGTGCTAGTGTAAGACAATGTCTGGGACATGACATCAG-CATTGAGACGAGAGCTAG
1 TTGACATGTGTGCTAATGTAAGACAATGTCTGGGACATGACATCAGACATT---ACGAGAGCCAG
*
80733920 TGTAAGACC-TCGTTTGGGATATGGCAT
63 TGTAAGACCAT-GTTTGGGACATGGCAT
80733947 TGGCCTCAAC
Statistics
Matches: 77, Mismatches: 9, Indels: 9
0.81 0.09 0.09
Matches are distributed among these distances:
92 4 0.05
94 1 0.01
95 62 0.81
96 10 0.13
ACGTcount: A:0.27, C:0.16, G:0.29, T:0.28
Consensus pattern (94 bp):
TTGACATGTGTGCTAATGTAAGACAATGTCTGGGACATGACATCAGACATTACGAGAGCCAGTGT
AAGACCATGTTTGGGACATGGCATCGGTA
Found at i:80741575 original size:15 final size:15
Alignment explanation
Indices: 80741554--80741587 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
80741544 AGAGTTAGGG
*
80741554 AAAAAAAGAAGAAAGT
1 AAAAAAA-AAAAAAGT
80741570 AAAAAAAAAAAAAGT
1 AAAAAAAAAAAAAGT
80741585 AAA
1 AAA
80741588 GATTATTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 10 0.59
16 7 0.41
ACGTcount: A:0.82, C:0.00, G:0.12, T:0.06
Consensus pattern (15 bp):
AAAAAAAAAAAAAGT
Found at i:80742341 original size:21 final size:21
Alignment explanation
Indices: 80742317--80742356 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
80742307 AAAGAAAATA
80742317 GCAACAAAACAATAAAAAACG
1 GCAACAAAACAATAAAAAACG
* * *
80742338 GCAAGAAAATAGTAAAAAA
1 GCAACAAAACAATAAAAAA
80742357 AACATTTTTT
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.68, C:0.12, G:0.12, T:0.07
Consensus pattern (21 bp):
GCAACAAAACAATAAAAAACG
Found at i:80747390 original size:14 final size:16
Alignment explanation
Indices: 80747371--80747414 Score: 56
Period size: 14 Copynumber: 2.8 Consensus size: 16
80747361 GGCAACCTAT
80747371 ATTTATTT-ATTTT-A
1 ATTTATTTAATTTTGA
80747385 ATTTATTTAATTTTGA
1 ATTTATTTAATTTTGA
*
80747401 ATTCAGTTTAATTT
1 ATTTA-TTTAATTT
80747415 ATATTGAAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 8 0.31
15 5 0.19
16 5 0.19
17 8 0.31
ACGTcount: A:0.30, C:0.02, G:0.05, T:0.64
Consensus pattern (16 bp):
ATTTATTTAATTTTGA
Found at i:80749761 original size:6 final size:6
Alignment explanation
Indices: 80749752--80749785 Score: 68
Period size: 6 Copynumber: 5.7 Consensus size: 6
80749742 TCGAAGCATA
80749752 CTGAGG CTGAGG CTGAGG CTGAGG CTGAGG CTGA
1 CTGAGG CTGAGG CTGAGG CTGAGG CTGAGG CTGA
80749786 ATTTTAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.18, C:0.18, G:0.47, T:0.18
Consensus pattern (6 bp):
CTGAGG
Found at i:80751154 original size:17 final size:17
Alignment explanation
Indices: 80751128--80751162 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
80751118 GGTAACGGTA
80751128 AATTTTAATAT-ATTCT
1 AATTTTAATATAATTCT
80751144 AATTGTTAATATAATTCT
1 AATT-TTAATATAATTCT
80751162 A
1 A
80751163 GAATTATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 4 0.24
17 7 0.41
18 6 0.35
ACGTcount: A:0.40, C:0.06, G:0.03, T:0.51
Consensus pattern (17 bp):
AATTTTAATATAATTCT
Found at i:80751393 original size:11 final size:11
Alignment explanation
Indices: 80751372--80751406 Score: 61
Period size: 11 Copynumber: 3.1 Consensus size: 11
80751362 AGGTTTTCTC
80751372 AAAAGAAAAAAG
1 AAAA-AAAAAAG
80751384 AAAAAAAAAAG
1 AAAAAAAAAAG
80751395 AAAAAAAAAAG
1 AAAAAAAAAAG
80751406 A
1 A
80751407 GATAAATTTG
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
11 19 0.83
12 4 0.17
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (11 bp):
AAAAAAAAAAG
Found at i:80753149 original size:2 final size:2
Alignment explanation
Indices: 80753142--80753168 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
80753132 TATTTCAGTT
80753142 TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC T
80753169 TGCGCATATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:80756956 original size:37 final size:37
Alignment explanation
Indices: 80756901--80756972 Score: 92
Period size: 37 Copynumber: 1.9 Consensus size: 37
80756891 AAGTGTTAAA
* * *
80756901 TGTAGATAGAGAGTTTCTTATGGTTTGGAATTTAGTT
1 TGTAGACAGAGAGTTTCTTATAGTTTAGAATTTAGTT
*
80756938 TGTAGACAGAGAAG-TTCTTATAGTTTAGAGTTTAG
1 TGTAGACAGAG-AGTTTCTTATAGTTTAGAATTTAG
80756973 GGTTTTAGGT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
37 28 0.93
38 2 0.07
ACGTcount: A:0.28, C:0.04, G:0.26, T:0.42
Consensus pattern (37 bp):
TGTAGACAGAGAGTTTCTTATAGTTTAGAATTTAGTT
Found at i:80758866 original size:23 final size:25
Alignment explanation
Indices: 80758840--80758887 Score: 64
Period size: 23 Copynumber: 2.0 Consensus size: 25
80758830 TAAATTTTAT
80758840 CAGTTTAAAATTT-AA-TTATTAAA
1 CAGTTTAAAATTTCAATTTATTAAA
**
80758863 CAGTTTATTATTTCAATTTATTAAA
1 CAGTTTAAAATTTCAATTTATTAAA
80758888 GATGCACCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
23 11 0.52
24 2 0.10
25 8 0.38
ACGTcount: A:0.42, C:0.06, G:0.04, T:0.48
Consensus pattern (25 bp):
CAGTTTAAAATTTCAATTTATTAAA
Found at i:80759208 original size:30 final size:32
Alignment explanation
Indices: 80759141--80759213 Score: 89
Period size: 30 Copynumber: 2.4 Consensus size: 32
80759131 TTTAAAAAAA
* *
80759141 TAAAAAAATTATAAAAATTATTTTCAAAAATT
1 TAAAAAAATAATAAAAATAATTTTCAAAAATT
**
80759173 T--AAAAATAATAAAAATAATTTT-AAATTTT
1 TAAAAAAATAATAAAAATAATTTTCAAAAATT
80759202 TAAAAAAATAAT
1 TAAAAAAATAAT
80759214 TAATTGCTAA
Statistics
Matches: 35, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
29 6 0.17
30 19 0.54
31 9 0.26
32 1 0.03
ACGTcount: A:0.62, C:0.01, G:0.00, T:0.37
Consensus pattern (32 bp):
TAAAAAAATAATAAAAATAATTTTCAAAAATT
Found at i:80759349 original size:10 final size:10
Alignment explanation
Indices: 80759334--80759358 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
80759324 GTTTAAAAAT
80759334 TAAAATTAAA
1 TAAAATTAAA
80759344 TAAAATTAAA
1 TAAAATTAAA
80759354 TAAAA
1 TAAAA
80759359 GACTAAAATA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.72, C:0.00, G:0.00, T:0.28
Consensus pattern (10 bp):
TAAAATTAAA
Found at i:80759820 original size:2 final size:2
Alignment explanation
Indices: 80759813--80759843 Score: 62
Period size: 2 Copynumber: 15.5 Consensus size: 2
80759803 CTCCTCTTGT
80759813 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
80759844 AAAAGAGGAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 29 1.00
ACGTcount: A:0.52, C:0.48, G:0.00, T:0.00
Consensus pattern (2 bp):
AC
Found at i:80764058 original size:22 final size:22
Alignment explanation
Indices: 80764010--80764060 Score: 59
Period size: 22 Copynumber: 2.3 Consensus size: 22
80764000 ATCTAGTAAC
**
80764010 AAATTATGTAATTTTTTAAAAA
1 AAATTATGTAATTTTAAAAAAA
*
80764032 TAATTATGTAA-TTTAAAATAAA
1 AAATTATGTAATTTTAAAA-AAA
80764054 AAATTAT
1 AAATTAT
80764061 TTAAAAATTG
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 5 0.21
22 19 0.79
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (22 bp):
AAATTATGTAATTTTAAAAAAA
Found at i:80768574 original size:26 final size:26
Alignment explanation
Indices: 80768503--80768587 Score: 100
Period size: 26 Copynumber: 3.2 Consensus size: 26
80768493 CATTAGGGTA
* *
80768503 TAGCAGGCTTTGTACCGGTGTATATT
1 TAGCAGGCTTTGTGCTGGTGTATATT
* *
80768529 TAGTAGGCTTTGAG-TCGGTGTATATT
1 TAGCAGGCTTTGTGCT-GGTGTATATT
*
80768555 TAGCAGGCTTTGTGCTGGTGTTTTATT
1 TAGCAGGCTTTGTGCTGGTG-TATATT
80768582 TAGCAG
1 TAGCAG
80768588 TACTATGCAC
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
26 37 0.76
27 12 0.24
ACGTcount: A:0.18, C:0.12, G:0.29, T:0.41
Consensus pattern (26 bp):
TAGCAGGCTTTGTGCTGGTGTATATT
Found at i:80774606 original size:45 final size:45
Alignment explanation
Indices: 80774542--80774632 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
80774532 CTAGGAATTT
* *
80774542 AGAAATCCGAGCTCGTTGAGTTGGTCCAAGTTTGTGATATATGTG
1 AGAAATCCGAACTCGTTGAGCTGGTCCAAGTTTGTGATATATGTG
* *
80774587 AGAAATTCGAACTTGTTGAGCTGGTCCAAGTTTGTGATATATGTG
1 AGAAATCCGAACTCGTTGAGCTGGTCCAAGTTTGTGATATATGTG
80774632 A
1 A
80774633 AGCATCTGCG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.26, C:0.12, G:0.27, T:0.34
Consensus pattern (45 bp):
AGAAATCCGAACTCGTTGAGCTGGTCCAAGTTTGTGATATATGTG
Found at i:80774663 original size:45 final size:43
Alignment explanation
Indices: 80774552--80774656 Score: 131
Period size: 45 Copynumber: 2.3 Consensus size: 43
80774542 AGAAATCCGA
80774552 GCTCGTTGAGTTGGTCCAAGTTTGTGATATATGTGAGAAATTC
1 GCTCGTTGAGTTGGTCCAAGTTTGTGATATATGTGAGAAATTC
* * *
80774595 GAACTTGTTGAGCTGGTCCAAGTTTGTGATATATGTGA-AGCATCTGC
1 G--CTCGTTGAGTTGGTCCAAGTTTGTGATATATGTGAGA-AAT-T-C
80774642 GCTCGTTGAGTTGGT
1 GCTCGTTGAGTTGGT
80774657 ATAAGTTCAT
Statistics
Matches: 52, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
43 1 0.02
44 1 0.02
45 47 0.90
46 1 0.02
47 2 0.04
ACGTcount: A:0.21, C:0.13, G:0.30, T:0.36
Consensus pattern (43 bp):
GCTCGTTGAGTTGGTCCAAGTTTGTGATATATGTGAGAAATTC
Found at i:80774741 original size:52 final size:52
Alignment explanation
Indices: 80774672--80774779 Score: 128
Period size: 52 Copynumber: 2.1 Consensus size: 52
80774662 TTCATTATGA
* * *
80774672 ATGTGAGCATCCGAGCTCACTGAGTTTATCCGAGTTTATTATGGATGTGATGC
1 ATGTGAGCATCCGAGCTCACTGAGTTGATCCGAGTTCATTATGGATGT-ATAC
* ** * *
80774725 ATGTGA-CATCTGAGCTCGTTGAGTTGGTTCGAGTTCATTATGGATGTATAC
1 ATGTGAGCATCCGAGCTCACTGAGTTGATCCGAGTTCATTATGGATGTATAC
80774776 ATGT
1 ATGT
80774780 TATGAGGTAG
Statistics
Matches: 47, Mismatches: 8, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
51 7 0.15
52 34 0.72
53 6 0.13
ACGTcount: A:0.22, C:0.15, G:0.27, T:0.36
Consensus pattern (52 bp):
ATGTGAGCATCCGAGCTCACTGAGTTGATCCGAGTTCATTATGGATGTATAC
Found at i:80785098 original size:47 final size:47
Alignment explanation
Indices: 80785027--80785188 Score: 218
Period size: 47 Copynumber: 3.4 Consensus size: 47
80785017 TATCACAGTT
* * * *
80785027 ATACACTTCCAC-TTCCATCCCATTGACCATTCGGCCTTATCATATAT
1 ATACACTTTCACATT-CATCACATTGGCCATTCGGCCTTATCATATAC
* *
80785074 ATATACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
* *
80785121 ATACCCTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATAGAC
1 ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTAT--CATATAC
80785170 ATACACTTTCACATTCATC
1 ATACACTTTCACATTCATC
80785189 GTAACAAAAT
Statistics
Matches: 101, Mismatches: 11, Indels: 4
0.87 0.09 0.03
Matches are distributed among these distances:
47 76 0.75
48 2 0.02
49 23 0.23
ACGTcount: A:0.27, C:0.32, G:0.07, T:0.33
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCATATAC
Found at i:80789964 original size:27 final size:26
Alignment explanation
Indices: 80789933--80790110 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
80789923 TAAATTGTAC
80789933 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
80789960 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
80789986 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
80790014 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
80790042 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
80790069 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
80790096 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80790111 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:80790049 original size:82 final size:81
Alignment explanation
Indices: 80789934--80790089 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80789924 AAATTGTACA
* *
80789934 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
80789998 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
80790015 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
80790080 TGCGAGTTGA
65 TGCGAATTGA
80790090 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80790101 original size:82 final size:81
Alignment explanation
Indices: 80789930--80790110 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
80789920 GATTAAATTG
* *
80789930 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
80789995 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
80790011 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
80790075 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80790093 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80790111 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80790121 original size:27 final size:27
Alignment explanation
Indices: 80790015--80790121 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
80790005 TGACCATGCG
* * * *
80790015 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
80790043 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
80790070 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
80790097 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
80790122 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:80797697 original size:70 final size:72
Alignment explanation
Indices: 80797567--80797709 Score: 263
Period size: 70 Copynumber: 2.0 Consensus size: 72
80797557 GTCTAAGCTT
80797567 AGGTGATTTCGATGATGATATATATATATATTCATAAGTATATTTAGTTGATTCGGCTTTGGTAG
1 AGGTGATTTCGATGATGA-ATATATATATATTCATAAGTATATTTAGTTGATTCGGCTTTGGTAG
80797632 TTGCATGA
65 TTGCATGA
80797640 AGGTGATTTCGATGATG-ATATATATATATTCATAAGTATA-TTAGTTGATTCGGCTTTGGTAGT
1 AGGTGATTTCGATGATGAATATATATATATTCATAAGTATATTTAGTTGATTCGGCTTTGGTAGT
80797703 TGCATGA
66 TGCATGA
80797710 GGCTATTGGC
Statistics
Matches: 70, Mismatches: 0, Indels: 3
0.96 0.00 0.04
Matches are distributed among these distances:
70 30 0.43
71 23 0.33
73 17 0.24
ACGTcount: A:0.29, C:0.07, G:0.22, T:0.42
Consensus pattern (72 bp):
AGGTGATTTCGATGATGAATATATATATATTCATAAGTATATTTAGTTGATTCGGCTTTGGTAGT
TGCATGA
Found at i:80798160 original size:27 final size:26
Alignment explanation
Indices: 80798129--80798306 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 26
80798119 TAAATTGTAC
80798129 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
80798156 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
80798182 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
80798210 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
80798238 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
80798265 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
80798292 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80798307 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 17, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
26 1 0.01
27 103 0.80
28 25 0.19
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:80798245 original size:82 final size:81
Alignment explanation
Indices: 80798130--80798285 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
80798120 AAATTGTACA
* *
80798130 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
80798194 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
80798211 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
80798276 TGCGAGTTGA
65 TGCGAATTGA
80798286 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:80798297 original size:82 final size:81
Alignment explanation
Indices: 80798126--80798306 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
80798116 GATTAAATTG
* *
80798126 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
80798191 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
80798207 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
80798271 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
80798289 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
80798307 GGCTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:80798317 original size:27 final size:27
Alignment explanation
Indices: 80798211--80798317 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
80798201 TGACCATGCG
* * * *
80798211 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
80798239 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
80798266 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
80798293 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
80798318 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:80805084 original size:21 final size:20
Alignment explanation
Indices: 80805033--80805084 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
80805023 AAATTCAAAT
* *
80805033 TAAAATACTAAAATTTAGGA
1 TAAAATACTGAAATTTAAGA
*
80805053 TAAAATTCTGAAATTTAAGA
1 TAAAATACTGAAATTTAAGA
80805073 TAAAAATACTGA
1 T-AAAATACTGA
80805085 TGTGGCATAA
Statistics
Matches: 27, Mismatches: 4, Indels: 1
0.84 0.12 0.03
Matches are distributed among these distances:
20 18 0.67
21 9 0.33
ACGTcount: A:0.54, C:0.06, G:0.10, T:0.31
Consensus pattern (20 bp):
TAAAATACTGAAATTTAAGA
Found at i:80811719 original size:23 final size:23
Alignment explanation
Indices: 80811693--80811739 Score: 58
Period size: 23 Copynumber: 2.0 Consensus size: 23
80811683 CATTCTATTT
*
80811693 TCATACCCATGCCATTACTATGC
1 TCATACCCATGCCATTACCATGC
* * *
80811716 TCATTCTCATGCTATTACCATGC
1 TCATACCCATGCCATTACCATGC
80811739 T
1 T
80811740 AATGTCACGA
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 20 1.00
ACGTcount: A:0.23, C:0.32, G:0.09, T:0.36
Consensus pattern (23 bp):
TCATACCCATGCCATTACCATGC
Found at i:80813279 original size:15 final size:15
Alignment explanation
Indices: 80813259--80813293 Score: 54
Period size: 15 Copynumber: 2.4 Consensus size: 15
80813249 TCACTAACCA
*
80813259 ATACTTTTCTCGTTT
1 ATACTTTTCTCATTT
80813274 ATACTTTTCTCATTT
1 ATACTTTTCTCATTT
80813289 A-ACTT
1 ATACTT
80813294 AAACTGTAAC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 4 0.21
15 15 0.79
ACGTcount: A:0.20, C:0.20, G:0.03, T:0.57
Consensus pattern (15 bp):
ATACTTTTCTCATTT
Found at i:80813737 original size:48 final size:48
Alignment explanation
Indices: 80813369--80813777 Score: 268
Period size: 45 Copynumber: 8.7 Consensus size: 48
80813359 GGGTATACTA
*
80813369 CCGATGCCATGTCCCAGACATGGTCTTACATTGG--CTCATCCATCAA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-C-TCAATG
** * ** * ** *
80813416 TTGATGCCATGTCCTAGACATGGTCTTACACTAACTATCGAAATCAAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ATCTCAATG
* * * *
80813465 CCGACGCCATGTCCCAAACATGGTCTTACACTAGCTCTCA-CAT-ATTCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATC-TCAAT-G
* * * * * *
80813513 TACCGATGCCATGTCCTATACATGGTTTTACACTGAAAC-CTC-TAT-ATGTG
1 --CCGATGCCATGTCCCAGACATGGTCTTACACTG--GCTCTCATCTCA-ATG
* * * * *
80813563 TCGGTGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTC-GTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAAT-G
80813609 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCAA-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATCTCAATG
* * *
80813654 GCGATG-CATGTCCTAGACAT-GTCTTACACTAGCTCTCATCTCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAATG
*
80813700 CCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCA--T-AATGTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAA--T-G
80813748 CCGATG-CATGTCCCAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
80813778 AGCACACAAA
Statistics
Matches: 289, Mismatches: 46, Indels: 55
0.74 0.12 0.14
Matches are distributed among these distances:
44 10 0.03
45 61 0.21
46 31 0.11
47 57 0.20
48 58 0.20
49 35 0.12
50 32 0.11
51 4 0.01
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATCTCAATG
Found at i:80814152 original size:30 final size:30
Alignment explanation
Indices: 80814116--80814172 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
80814106 CATAATTGGG
* *
80814116 CAAAATGACCATTTTGCCCTTAGACTTTCA
1 CAAAATGACCATTTTACCCCTAGACTTTCA
80814146 CAAAATGACCATTTTACCCCTAGACTT
1 CAAAATGACCATTTTACCCCTAGACTT
80814173 AAAAATCACT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.32
Consensus pattern (30 bp):
CAAAATGACCATTTTACCCCTAGACTTTCA
Found at i:80819732 original size:18 final size:20
Alignment explanation
Indices: 80819711--80819753 Score: 56
Period size: 19 Copynumber: 2.3 Consensus size: 20
80819701 AAAATATTAA
*
80819711 AAAATAAAA-AGG-AAAAGT
1 AAAATAAAAGAGGTAAAAGC
80819729 AAAA-AAAAGAGGTAAAAGC
1 AAAATAAAAGAGGTAAAAGC
80819748 AAAATA
1 AAAATA
80819754 TAATTAATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.19
18 7 0.33
19 9 0.43
20 1 0.05
ACGTcount: A:0.72, C:0.02, G:0.16, T:0.09
Consensus pattern (20 bp):
AAAATAAAAGAGGTAAAAGC
Found at i:80824815 original size:17 final size:17
Alignment explanation
Indices: 80824790--80824825 Score: 63
Period size: 17 Copynumber: 2.1 Consensus size: 17
80824780 TGTAGTGTTT
80824790 GAGTCCTATTTTACTGA
1 GAGTCCTATTTTACTGA
*
80824807 GAGTTCTATTTTACTGA
1 GAGTCCTATTTTACTGA
80824824 GA
1 GA
80824826 TACAATTGGC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.25, C:0.14, G:0.19, T:0.42
Consensus pattern (17 bp):
GAGTCCTATTTTACTGA
Found at i:80828088 original size:776 final size:776
Alignment explanation
Indices: 80826597--80828148 Score: 3086
Period size: 776 Copynumber: 2.0 Consensus size: 776
80826587 AGAACGAGCA
80826597 GGAAGGCAATACTCAACCTCCAACCGACGAGGTGGCTGAAAACCAAGGCAATCAGCTACCTCCTG
1 GGAAGGCAATACTCAACCTCCAACCGACGAGGTGGCTGAAAACCAAGGCAATCAGCTACCTCCTG
80826662 CAATTGCGGCTAATCATAATCCTGCTCCACGTACTATGTATGATTATGCTAAACTTTCTTTAATA
66 CAATTGCGGCTAATCATAATCCTGCTCCACGTACTATGTATGATTATGCTAAACTTTCTTTAATA
80826727 GGAACTGAATCTAGCATAGCTAGACCGGCTGTAGCTGCAAATACTTTTGAACTGAAACCTAACAC
131 GGAACTGAATCTAGCATAGCTAGACCGGCTGTAGCTGCAAATACTTTTGAACTGAAACCTAACAC
**
80826792 AATTCAAATGATACAGTAGTTTGTTCAGTTTGATGGTTTGCATGATGAAGATCCCAACGCTCACT
196 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGTTTGCATGATGAAGATCCCAACGCTCACT
80826857 TAGCAAACTTTCTGGAATTTTACGATACATTTAAAATCAATGGTGTTTCTGATGATGCCATTCGT
261 TAGCAAACTTTCTGGAATTTTACGATACATTTAAAATCAATGGTGTTTCTGATGATGCCATTCGT
80826922 CTTCAGTTATTTCCTTTTTCATTGAGAAACAAAGCTAAACAGTGGTTGAACTCGTTACCACGAGG
326 CTTCAGTTATTTCCTTTTTCATTGAGAAACAAAGCTAAACAGTGGTTGAACTCGTTACCACGAGG
80826987 GTCAATTACTACTTGGGAACAAATGATCGAAAAATTCTTACTAAAATATTTTCCGCCAACTAAAA
391 GTCAATTACTACTTGGGAACAAATGATCGAAAAATTCTTACTAAAATATTTTCCGCCAACTAAAA
80827052 CGGCTAAATTACGTAATGATATCTTTTCTTTTGTGCAGATGGATTTAGAAACACTTTACGATGCA
456 CGGCTAAATTACGTAATGATATCTTTTCTTTTGTGCAGATGGATTTAGAAACACTTTACGATGCA
80827117 TGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCATCATGGGTTACCGCTTTGGCTTCAAGT
521 TGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCATCATGGGTTACCGCTTTGGCTTCAAGT
80827182 TCAAACATTCCATAATGGTCTGAATCCTTCGAATCGACAAATGGTTGACGCAGCTGCTGGCGGAA
586 TCAAACATTCCATAATGGTCTGAATCCTTCGAATCGACAAATGGTTGACGCAGCTGCTGGCGGAA
80827247 CCATCAACAATAAAAAACCTAAAGATGCCTATGAGTTTATAGAAGAAATGTCACTGAATAACTAT
651 CCATCAACAATAAAAAACCTAAAGATGCCTATGAGTTTATAGAAGAAATGTCACTGAATAACTAT
80827312 TAGTGCCAAGTCATAAGGACTAAGCCAACAAAAACAGCCGGCGTTTATAACGTCGACTCAG
716 TAGTGCCAAGTCATAAGGACTAAGCCAACAAAAACAGCCGGCGTTTATAACGTCGACTCAG
80827373 GGAAGGCAATACTCAACCTCCAACCGACGAGGTGGCTGAAAACCAAGGCAATCAGCTACCTCCTG
1 GGAAGGCAATACTCAACCTCCAACCGACGAGGTGGCTGAAAACCAAGGCAATCAGCTACCTCCTG
80827438 CAATTGCGGCTAATCATAATCCTGCTCCACGTACTATGTATGATTATGCTAAACTTTCTTTAATA
66 CAATTGCGGCTAATCATAATCCTGCTCCACGTACTATGTATGATTATGCTAAACTTTCTTTAATA
80827503 GGAACTGAATCTAGCATAGCTAGACCGGCTGTAGCTGCAAATACTTTTGAACTGAAACCTAACAC
131 GGAACTGAATCTAGCATAGCTAGACCGGCTGTAGCTGCAAATACTTTTGAACTGAAACCTAACAC
80827568 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGTTTGCATGATGAAGATCCCAACGCTCACT
196 AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGTTTGCATGATGAAGATCCCAACGCTCACT
80827633 TAGCAAACTTTCTGGAATTTTACGATACATTTAAAATCAATGGTGTTTCTGATGATGCCATTCGT
261 TAGCAAACTTTCTGGAATTTTACGATACATTTAAAATCAATGGTGTTTCTGATGATGCCATTCGT
80827698 CTTCAGTTATTTCCTTTTTCATTGAGAAACAAAGCTAAACAGTGGTTGAACTCGTTACCACGAGG
326 CTTCAGTTATTTCCTTTTTCATTGAGAAACAAAGCTAAACAGTGGTTGAACTCGTTACCACGAGG
80827763 GTCAATTACTACTTGGGAACAAATGATCGAAAAATTCTTACTAAAATATTTTCCGCCAACTAAAA
391 GTCAATTACTACTTGGGAACAAATGATCGAAAAATTCTTACTAAAATATTTTCCGCCAACTAAAA
80827828 CGGCTAAATTACGTAATGATATCTTTTCTTTTGTGCAGATGGATTTAGAAACACTTTACGATGCA
456 CGGCTAAATTACGTAATGATATCTTTTCTTTTGTGCAGATGGATTTAGAAACACTTTACGATGCA
80827893 TGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCATCATGGGTTACCGCTTTGGCTTCAAGT
521 TGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCATCATGGGTTACCGCTTTGGCTTCAAGT
80827958 TCAAACATTCCATAATGGTCTGAATCCTTCGAATCGACAAATGGTTGACGCAGCTGCTGGCGGAA
586 TCAAACATTCCATAATGGTCTGAATCCTTCGAATCGACAAATGGTTGACGCAGCTGCTGGCGGAA
80828023 CCATCAACAATAAAAAACCTAAAGATGCCTATGAGTTTATAGAAGAAATGTCACTGAATAACTAT
651 CCATCAACAATAAAAAACCTAAAGATGCCTATGAGTTTATAGAAGAAATGTCACTGAATAACTAT
80828088 TAGTGCCAAGTCATAAGGACTAAGCCAACAAAAACAGCCGGCGTTTATAACGTCGACTCAG
716 TAGTGCCAAGTCATAAGGACTAAGCCAACAAAAACAGCCGGCGTTTATAACGTCGACTCAG
80828149 TTACTATGCT
Statistics
Matches: 774, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
776 774 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.28
Consensus pattern (776 bp):
GGAAGGCAATACTCAACCTCCAACCGACGAGGTGGCTGAAAACCAAGGCAATCAGCTACCTCCTG
CAATTGCGGCTAATCATAATCCTGCTCCACGTACTATGTATGATTATGCTAAACTTTCTTTAATA
GGAACTGAATCTAGCATAGCTAGACCGGCTGTAGCTGCAAATACTTTTGAACTGAAACCTAACAC
AATTCAAATGATACAACAGTTTGTTCAGTTTGATGGTTTGCATGATGAAGATCCCAACGCTCACT
TAGCAAACTTTCTGGAATTTTACGATACATTTAAAATCAATGGTGTTTCTGATGATGCCATTCGT
CTTCAGTTATTTCCTTTTTCATTGAGAAACAAAGCTAAACAGTGGTTGAACTCGTTACCACGAGG
GTCAATTACTACTTGGGAACAAATGATCGAAAAATTCTTACTAAAATATTTTCCGCCAACTAAAA
CGGCTAAATTACGTAATGATATCTTTTCTTTTGTGCAGATGGATTTAGAAACACTTTACGATGCA
TGGGAGAGATACAAGGACTTACTGAGAAGGTGCCCTCATCATGGGTTACCGCTTTGGCTTCAAGT
TCAAACATTCCATAATGGTCTGAATCCTTCGAATCGACAAATGGTTGACGCAGCTGCTGGCGGAA
CCATCAACAATAAAAAACCTAAAGATGCCTATGAGTTTATAGAAGAAATGTCACTGAATAACTAT
TAGTGCCAAGTCATAAGGACTAAGCCAACAAAAACAGCCGGCGTTTATAACGTCGACTCAG
Found at i:80836560 original size:50 final size:47
Alignment explanation
Indices: 80836438--80836561 Score: 133
Period size: 47 Copynumber: 2.6 Consensus size: 47
80836428 GGTATAATGC
* * *
80836438 CGATGCCATGTCCCAAACATGGTCTTACATTAGCTCTCACGTTAAGTT
1 CGATGCCATGT-CCAAACATGGTCTTACACTAACTCCCACGTTAAGTT
**
80836486 -GATGCCATGTTCCAAACATGGTCTTACACTAACTCCCACGTATCTGTGT
1 CGATGCCATG-TCCAAACATGGTCTTACACTAACTCCCACGT-TAAGT-T
* *
80836535 CGATGCCATGTCCTAGACGTGGTCTTA
1 CGATGCCATGTCC-AAACATGGTCTTA
80836562 TACTGACACA
Statistics
Matches: 64, Mismatches: 7, Indels: 8
0.81 0.09 0.10
Matches are distributed among these distances:
47 36 0.56
48 4 0.06
49 4 0.06
50 20 0.31
ACGTcount: A:0.23, C:0.27, G:0.19, T:0.31
Consensus pattern (47 bp):
CGATGCCATGTCCAAACATGGTCTTACACTAACTCCCACGTTAAGTT
Found at i:80836644 original size:46 final size:46
Alignment explanation
Indices: 80836582--80836749 Score: 182
Period size: 46 Copynumber: 3.6 Consensus size: 46
80836572 TCATGAAGTA
* *
80836582 GATGCATGTCCTAGACATGCCTTACACTGGCT-TGCATCAAGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATCAAGTGGCC
* * * *
80836628 GATGCACGTCCCAGACATATCTTACACTAGCTCTCATCTCAA-T-GTC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCTCA--TCAAGTGGCC
* *
80836674 GATGCCATGTCCCAGACATGGTCATACACTGGCTCTCAT-AATGTGGCT
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCAA-GTGGCC
80836722 GATGCATGTCCCAGACATGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
80836750 AGCACACAAA
Statistics
Matches: 101, Mismatches: 13, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
45 2 0.02
46 45 0.45
47 30 0.30
48 24 0.24
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATCAAGTGGCC
Found at i:80836720 original size:94 final size:92
Alignment explanation
Indices: 80836582--80836752 Score: 238
Period size: 94 Copynumber: 1.8 Consensus size: 92
80836572 TCATGAAGTA
* *
80836582 GATGCATGTCCTAGACATGCCTTACACTGGCTTGCATCAAGTGGCCGATGCACGTCCCAGACATA
1 GATGCATGTCCCAGACATGCCATACACTGGCTTGCATCAAGTGGCCGATGCACGTCCCAGACATA
80836647 TCTTACACTAGCTCTCATCTCAATGTC
66 TCTTACACTAGCTCTCATCTCAATGTC
* * *
80836674 GATGCCATGTCCCAGACATGGTCATACACTGGCTCT-CAT-AATGTGGCTGATGCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GCCATACACTGGCT-TGCATCAA-GTGGCCGATGCACGTCCCAGA
*
80836737 CATGTCTTACACTAGC
62 CATATCTTACACTAGC
80836753 ACACAAACAT
Statistics
Matches: 69, Mismatches: 6, Indels: 6
0.85 0.07 0.07
Matches are distributed among these distances:
92 4 0.06
93 15 0.22
94 49 0.71
95 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGCCATACACTGGCTTGCATCAAGTGGCCGATGCACGTCCCAGACATA
TCTTACACTAGCTCTCATCTCAATGTC
Found at i:80839001 original size:46 final size:46
Alignment explanation
Indices: 80838951--80839126 Score: 209
Period size: 46 Copynumber: 3.8 Consensus size: 46
80838941 TGATTGAGCA
80838951 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80838997 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80839042 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
80839090 -CCTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCC-GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80839127 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 9, Indels: 20
0.79 0.06 0.14
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 5 0.05
46 61 0.55
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80839107 original size:93 final size:93
Alignment explanation
Indices: 80838948--80839119 Score: 310
Period size: 93 Copynumber: 1.8 Consensus size: 93
80838938 GGATGATTGA
*
80838948 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
80839013 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
80839041 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCTGAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC-GAACTCGTTGAG
80839105 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
80839120 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
92 2 0.03
93 74 0.97
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:80851001 original size:21 final size:21
Alignment explanation
Indices: 80850975--80851018 Score: 88
Period size: 21 Copynumber: 2.1 Consensus size: 21
80850965 CAAACTGAAG
80850975 TAAAAATATTTATTTTATTAT
1 TAAAAATATTTATTTTATTAT
80850996 TAAAAATATTTATTTTATTAT
1 TAAAAATATTTATTTTATTAT
80851017 TA
1 TA
80851019 TTTTAATTTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (21 bp):
TAAAAATATTTATTTTATTAT
Found at i:80852290 original size:48 final size:48
Alignment explanation
Indices: 80852149--80852279 Score: 174
Period size: 48 Copynumber: 2.7 Consensus size: 48
80852139 TTAGGGGACA
* * *
80852149 CATTGATTTGGCTTCGGGCCATGATATTGGCACTTCGGGCGCAAGCTT
1 CATTGATTTGGCTTTGGGCCATGATATTGGCACTTCGGGTGCAAGATT
* * *
80852197 CATTTATTTGGCTTTGGGCCATGATATTAGTACTTCGGGTGCAAGATAT
1 CATTGATTTGGCTTTGGGCCATGATATTGGCACTTCGGGTGCAAGAT-T
* *
80852246 -ATTGAGTTGGCTTTGGGCCATGATAGTGGCACTT
1 CATTGATTTGGCTTTGGGCCATGATATTGGCACTT
80852280 AGTATGCAAG
Statistics
Matches: 71, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
48 70 0.99
49 1 0.01
ACGTcount: A:0.19, C:0.18, G:0.28, T:0.35
Consensus pattern (48 bp):
CATTGATTTGGCTTTGGGCCATGATATTGGCACTTCGGGTGCAAGATT
Found at i:80856918 original size:16 final size:17
Alignment explanation
Indices: 80856882--80856919 Score: 76
Period size: 17 Copynumber: 2.2 Consensus size: 17
80856872 CCATTTAAGG
80856882 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
80856899 AAAACAAATGAATCTTA
1 AAAACAAATGAATCTTA
80856916 AAAA
1 AAAA
80856920 TAAAAGAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.63, C:0.11, G:0.05, T:0.21
Consensus pattern (17 bp):
AAAACAAATGAATCTTA
Found at i:80857514 original size:26 final size:26
Alignment explanation
Indices: 80857475--80857636 Score: 252
Period size: 26 Copynumber: 6.2 Consensus size: 26
80857465 TGATACAAAT
80857475 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
80857501 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
80857527 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
80857553 TGATAATAGATTAGGTAAATATTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
*
80857579 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
80857605 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
80857631 TGATAA
1 TGATAA
80857637 GAATTTCATG
Statistics
Matches: 124, Mismatches: 12, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
26 124 1.00
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:80857532 original size:52 final size:52
Alignment explanation
Indices: 80857475--80857636 Score: 279
Period size: 52 Copynumber: 3.1 Consensus size: 52
80857465 TGATACAAAT
*
80857475 TGATAATAGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
80857527 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
* * * *
80857579 TGATAATGGGTTAGGTAAATGTTCCATGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
80857631 TGATAA
1 TGATAA
80857637 GAATTTCATG
Statistics
Matches: 105, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 105 1.00
ACGTcount: A:0.36, C:0.07, G:0.22, T:0.35
Consensus pattern (52 bp):
TGATAATGGGTTAGGTAAATGTTCCATGATAATAGATTAGGTAAATATTCCA
Found at i:80862368 original size:26 final size:26
Alignment explanation
Indices: 80862339--80862498 Score: 320
Period size: 26 Copynumber: 6.2 Consensus size: 26
80862329 TGGTACAAAT
80862339 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80862365 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80862391 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80862417 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80862443 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80862469 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
80862495 TGAT
1 TGAT
80862499 GGGCATTTCA
Statistics
Matches: 134, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 134 1.00
ACGTcount: A:0.31, C:0.07, G:0.27, T:0.35
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:80867596 original size:9 final size:9
Alignment explanation
Indices: 80867582--80867606 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
80867572 TGCAAGCTAT
80867582 CAAACTGAA
1 CAAACTGAA
80867591 CAAACTGAA
1 CAAACTGAA
80867600 CAAACTG
1 CAAACTG
80867607 TTGTATCATC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.52, C:0.24, G:0.12, T:0.12
Consensus pattern (9 bp):
CAAACTGAA
Found at i:80872476 original size:25 final size:24
Alignment explanation
Indices: 80872447--80872501 Score: 56
Period size: 25 Copynumber: 2.2 Consensus size: 24
80872437 CTCATAAAGA
* *
80872447 AAAAACCAAAATTGCTAATTAAAAAT
1 AAAATCCAAAA-T-CTAATAAAAAAT
*
80872473 AAAATTCTAAAATCTAATAAAAAAT
1 AAAA-TCCAAAATCTAATAAAAAAT
80872498 AAAA
1 AAAA
80872502 ACTAGTTTTA
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
25 15 0.60
26 5 0.20
27 5 0.20
ACGTcount: A:0.65, C:0.09, G:0.02, T:0.24
Consensus pattern (24 bp):
AAAATCCAAAATCTAATAAAAAAT
Found at i:80879667 original size:53 final size:53
Alignment explanation
Indices: 80879587--80879691 Score: 183
Period size: 53 Copynumber: 2.0 Consensus size: 53
80879577 ATCCATTACT
*
80879587 ATATTAAAACAAAACACAGTTTAGAATAATCAGGAGTCACCACACTATCACAA
1 ATATTAAAACAAAACACAGTTTAGAATAAACAGGAGTCACCACACTATCACAA
* *
80879640 ATATTAAAATAAAACACAGTTTAGAATAAACAGGAGTCACCATACTATCACA
1 ATATTAAAACAAAACACAGTTTAGAATAAACAGGAGTCACCACACTATCACA
80879692 GTATATTTAT
Statistics
Matches: 49, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 49 1.00
ACGTcount: A:0.50, C:0.19, G:0.10, T:0.22
Consensus pattern (53 bp):
ATATTAAAACAAAACACAGTTTAGAATAAACAGGAGTCACCACACTATCACAA
Found at i:80886206 original size:12 final size:12
Alignment explanation
Indices: 80886181--80886276 Score: 55
Period size: 12 Copynumber: 8.4 Consensus size: 12
80886171 ATCTAAAAGA
80886181 TAAATATTAAAT
1 TAAATATTAAAT
80886193 TAAAT-TTAATAT
1 TAAATATTAA-AT
* *
80886205 TAAGATAATCAAT
1 TAA-ATATTAAAT
*
80886218 TTAATATTAAAT
1 TAAATATTAAAT
80886230 T-AATA--AAA-
1 TAAATATTAAAT
* *
80886238 T-ACTATCAAA-
1 TAAATATTAAAT
*
80886248 TAAGTATTAAAT
1 TAAATATTAAAT
80886260 TAAAT-TTAATAT
1 TAAATATTAA-AT
80886272 TAAAT
1 TAAAT
80886277 TTATCAAAAT
Statistics
Matches: 67, Mismatches: 9, Indels: 16
0.73 0.10 0.17
Matches are distributed among these distances:
8 4 0.06
9 3 0.04
10 4 0.06
11 19 0.28
12 29 0.43
13 6 0.09
14 2 0.03
ACGTcount: A:0.54, C:0.03, G:0.02, T:0.41
Consensus pattern (12 bp):
TAAATATTAAAT
Found at i:80886233 original size:20 final size:19
Alignment explanation
Indices: 80886183--80886235 Score: 67
Period size: 20 Copynumber: 2.8 Consensus size: 19
80886173 CTAAAAGATA
80886183 AATATTAAATT-A-AATTT
1 AATATTAAATTAATAATTT
80886200 AATATTAAGA-TAATCAATTT
1 AATATTAA-ATTAAT-AATTT
80886220 AATATTAAATTAATAA
1 AATATTAAATTAATAA
80886236 AATACTATCA
Statistics
Matches: 31, Mismatches: 0, Indels: 8
0.79 0.00 0.21
Matches are distributed among these distances:
17 9 0.29
18 2 0.06
19 3 0.10
20 17 0.55
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.42
Consensus pattern (19 bp):
AATATTAAATTAATAATTT
Found at i:80889279 original size:55 final size:55
Alignment explanation
Indices: 80889218--80889337 Score: 181
Period size: 55 Copynumber: 2.2 Consensus size: 55
80889208 TCGATTTCAT
*
80889218 TTTTCATTTTCATTTTAGAGAAAACCACATTCATTTTCAAATGATT-ATTTCTCCA
1 TTTTCATTTTCATTTTAGAGAAAACCACA-TCACTTTCAAATGATTCATTTCTCCA
* *
80889273 TTTTCATTTTCATTTTGGAGAAAACCATATCACTTTCAAATGATTCATTTCTCCA
1 TTTTCATTTTCATTTTAGAGAAAACCACATCACTTTCAAATGATTCATTTCTCCA
80889328 TTCTT-ATTTT
1 TT-TTCATTTT
80889338 TAGTTTGGAA
Statistics
Matches: 60, Mismatches: 3, Indels: 4
0.90 0.04 0.06
Matches are distributed among these distances:
54 15 0.25
55 43 0.72
56 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.06, T:0.47
Consensus pattern (55 bp):
TTTTCATTTTCATTTTAGAGAAAACCACATCACTTTCAAATGATTCATTTCTCCA
Found at i:80889345 original size:55 final size:55
Alignment explanation
Indices: 80889218--80889351 Score: 173
Period size: 55 Copynumber: 2.4 Consensus size: 55
80889208 TCGATTTCAT
* * *
80889218 TTTTCATTTTCATTTTAGAGAAAACCACATTCATTTTCAAATGATTATTTCTCCA
1 TTTTCATTTTCAGTTTGGAGAAAACCACATTCACTTTCAAATGATTATTTCTCCA
* *
80889273 TTTTCATTTTCATTTTGGAGAAAACCATA-TCACTTTCAAATGATTCATTTCTCCA
1 TTTTCATTTTCAGTTTGGAGAAAACCACATTCACTTTCAAATGATT-ATTTCTCCA
* *
80889328 TTCTT-ATTTTTAGTTTGGAAAAAA
1 TT-TTCATTTTCAGTTTGGAGAAAA
80889352 ACTATAATCA
Statistics
Matches: 71, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
54 15 0.21
55 54 0.76
56 2 0.03
ACGTcount: A:0.31, C:0.16, G:0.07, T:0.46
Consensus pattern (55 bp):
TTTTCATTTTCAGTTTGGAGAAAACCACATTCACTTTCAAATGATTATTTCTCCA
Found at i:80894419 original size:19 final size:20
Alignment explanation
Indices: 80894395--80894434 Score: 73
Period size: 19 Copynumber: 2.0 Consensus size: 20
80894385 AAACTTGTTG
80894395 AATTTTTATATTTAG-GTCA
1 AATTTTTATATTTAGAGTCA
80894414 AATTTTTATATTTAGAGTCA
1 AATTTTTATATTTAGAGTCA
80894434 A
1 A
80894435 GTTAATAGAA
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 15 0.75
20 5 0.25
ACGTcount: A:0.35, C:0.05, G:0.10, T:0.50
Consensus pattern (20 bp):
AATTTTTATATTTAGAGTCA
Found at i:80896718 original size:21 final size:20
Alignment explanation
Indices: 80896681--80896721 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 20
80896671 TTGAAGAAAA
80896681 ATAAAAAATAAAAATATTTT
1 ATAAAAAATAAAAATATTTT
* *
80896701 ATAAAATAATATATATATTTT
1 ATAAAA-AATAAAAATATTTT
80896722 TTGATAATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (20 bp):
ATAAAAAATAAAAATATTTT
Found at i:80899933 original size:20 final size:18
Alignment explanation
Indices: 80899910--80899949 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 18
80899900 GTTTTGGTAA
80899910 AATTCTTATCGAAAATAATT
1 AATTCTTAT--AAAATAATT
*
80899930 AATTTTTATAAAATAATT
1 AATTCTTATAAAATAATT
80899948 AA
1 AA
80899950 AATTGTACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 11 0.58
20 8 0.42
ACGTcount: A:0.50, C:0.05, G:0.03, T:0.42
Consensus pattern (18 bp):
AATTCTTATAAAATAATT
Found at i:80899953 original size:20 final size:21
Alignment explanation
Indices: 80899907--80899953 Score: 55
Period size: 20 Copynumber: 2.3 Consensus size: 21
80899897 GCAGTTTTGG
80899907 TAAAATTCTTATCGAAAATAAT
1 TAAAATTCTTATC-AAAATAAT
*
80899929 T--AATTTTTAT-AAAATAAT
1 TAAAATTCTTATCAAAATAAT
80899947 TAAAATT
1 TAAAATT
80899954 GTACTTAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 6
0.76 0.03 0.21
Matches are distributed among these distances:
18 9 0.41
20 12 0.55
22 1 0.05
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.43
Consensus pattern (21 bp):
TAAAATTCTTATCAAAATAAT
Found at i:80909693 original size:28 final size:27
Alignment explanation
Indices: 80909636--80909732 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
80909626 TAAATTGTGC
*
80909636 AGCACTAAGTGTGCGAATTGAATATGT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
80909663 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGAATATGT
* *
80909691 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGAATATGT
*
80909718 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80909733 GACTTAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGAATATGT
Found at i:80918314 original size:28 final size:28
Alignment explanation
Indices: 80918232--80918436 Score: 272
Period size: 28 Copynumber: 7.4 Consensus size: 28
80918222 GAGATTGGCG
* * * *
80918232 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
80918261 CTAAGTGTGCGA-ATTGAATATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
80918288 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
80918316 CTAAGTGTGCGAGTATGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
80918344 CTAAGTGTGCGAG-TTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
80918371 CTAAGTGTGCGAGTATGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
80918399 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
80918426 CTGAGTGTGCG
1 CTAAGTGTGCG
80918437 GACTTAATAT
Statistics
Matches: 157, Mismatches: 17, Indels: 6
0.87 0.09 0.03
Matches are distributed among these distances:
27 67 0.43
28 79 0.50
29 11 0.07
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:80918322 original size:55 final size:55
Alignment explanation
Indices: 80918257--80918436 Score: 299
Period size: 55 Copynumber: 3.3 Consensus size: 55
80918247 TAAATTGTGC
* *
80918257 AGCACTAAGTGTGCGAAT-TGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAG-TTGACTATGT
80918312 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGACTATGT
* *
80918367 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGACTATGT
*
80918422 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80918437 GACTTAATAT
Statistics
Matches: 119, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
55 94 0.79
56 25 0.21
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGACTATGT
Found at i:80918372 original size:83 final size:82
Alignment explanation
Indices: 80918257--80918436 Score: 297
Period size: 83 Copynumber: 2.2 Consensus size: 82
80918247 TAAATTGTGC
*
80918257 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGT
*
80918322 GTGCGAGTATGATTATGT
66 GTGCGAGT-TGATTATAT
* * *
80918340 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGT
80918405 GTGCGAGTTGATTATAT
66 GTGCGAGTTGATTATAT
*
80918422 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
80918437 GACTTAATAT
Statistics
Matches: 91, Mismatches: 6, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
82 22 0.24
83 69 0.76
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAATTGAATATGTAGCACTAAGTGTGCGAGTATGACTATGTAGCACTAAGT
GTGCGAGTTGATTATAT
Found at i:80920433 original size:29 final size:29
Alignment explanation
Indices: 80920391--80920462 Score: 126
Period size: 29 Copynumber: 2.5 Consensus size: 29
80920381 ACACGGCCTG
80920391 GCACACGGGAGTGTATGACCATTTTTACC
1 GCACACGGGAGTGTATGACCATTTTTACC
80920420 GCACACGGGAGTGTATGACCATTTTTACC
1 GCACACGGGAGTGTATGACCATTTTTACC
* *
80920449 GCACATGGGCGTGT
1 GCACACGGGAGTGT
80920463 CTGTTGGCCG
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
29 41 1.00
ACGTcount: A:0.22, C:0.24, G:0.28, T:0.26
Consensus pattern (29 bp):
GCACACGGGAGTGTATGACCATTTTTACC
Found at i:80932206 original size:96 final size:95
Alignment explanation
Indices: 80932058--80932332 Score: 327
Period size: 96 Copynumber: 2.9 Consensus size: 95
80932048 GACCATTGCG
* * * * * * *
80932058 ATATGAGAGTCAGTGTAAAACCATGTCTGGGACATGGCATCAGCCTCGATATGTGTCAATGTAAG
1 ATATGTGAGCCAGTGTAAGACCATATCTGAGACATGGCATCAGCCTCAATATGTGTCAGTGTAAG
* * *
80932123 ACCATGTCTGGGACATGGCATTGGCACCGGT
66 ACCATGTTTGGAACATGGCATCGGCA-CGGT
* * * *
80932154 ATATGTGAGCCAGTGTAAGACCATTTCTGAGACATGGCATCGGCCTCAATATGTGTCAGTCTAAT
1 ATATGTGAGCCAGTGTAAGACCATATCTGAGACATGGCATCAGCCTCAATATGTGTCAGTGTAAG
* * **
80932219 ACCATATTTGGAACAAGGCATCGGCATTGT
66 ACCATGTTTGGAACATGGCATCGGCACGGT
* * *
80932249 -TATGTGAGCCAGTGTAAGACCACATCTGAGACATGGCATCAGCCTCAATATGCGAGCCAGTGTA
1 ATATGTGAGCCAGTGTAAGACCATATCTGAGACATGGCATCAGCCTCAATAT--GTGTCAGTGTA
80932313 AGACCATGTTTGGAACATGG
64 AGACCATGTTTGGAACATGG
80932333 AATCATTGTT
Statistics
Matches: 151, Mismatches: 26, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
94 48 0.32
95 2 0.01
96 101 0.67
ACGTcount: A:0.28, C:0.20, G:0.26, T:0.25
Consensus pattern (95 bp):
ATATGTGAGCCAGTGTAAGACCATATCTGAGACATGGCATCAGCCTCAATATGTGTCAGTGTAAG
ACCATGTTTGGAACATGGCATCGGCACGGT
Found at i:80932331 original size:48 final size:47
Alignment explanation
Indices: 80932058--80932337 Score: 183
Period size: 48 Copynumber: 5.9 Consensus size: 47
80932048 GACCATTGCG
* * * *
80932058 ATATGAGAGTCAGTGTAAAACCATGTCTGGGACATGGCATCAGCCTCG
1 ATATG-GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCA
* * * * ***
80932106 ATAT-GTGTCAATGTAAGACCATGTCTGGGACATGGCATTGGCA-CCGGT
1 ATATGGAGCCAGTGTAAGACCATGTCTGGAACATGGCA-T--CAGCCTCA
* *
80932154 ATATGTGAGCCAGTGTAAGACCATTTCT-GAGACATGGCATCGGCCTCA
1 ATATG-GAGCCAGTGTAAGACCATGTCTGGA-ACATGGCATCAGCCTCA
* * * * * * * * * **
80932202 ATAT-GTGTCAGTCTAATACCATATTTGGAACAAGGCATCGGCATTG
1 ATATGGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCA
* **
80932248 TTATGTGAGCCAGTGTAAGACCACATCT-GAGACATGGCATCAGCCTCA
1 ATATG-GAGCCAGTGTAAGACCATGTCTGGA-ACATGGCATCAGCCTCA
* *
80932296 ATATGCGAGCCAGTGTAAGACCATGTTTGGAACATGGAATCA
1 ATATG-GAGCCAGTGTAAGACCATGTCTGGAACATGGCATCA
80932338 TTGTTAAATG
Statistics
Matches: 177, Mismatches: 43, Indels: 24
0.73 0.18 0.10
Matches are distributed among these distances:
46 62 0.35
47 6 0.03
48 77 0.44
49 6 0.03
50 26 0.15
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (47 bp):
ATATGGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCAGCCTCA
Found at i:80935039 original size:49 final size:48
Alignment explanation
Indices: 80934981--80935154 Score: 165
Period size: 49 Copynumber: 3.6 Consensus size: 48
80934971 TATATGTCGA
*
80934981 TGTAAGACCTGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCCAG
* * * ** * * *
80935030 TGTAAGACCTATCTTGTACACAGCATCGACCTCGACATATGAAAGTC-G
1 TGTAAGACCTGTCTGGGACATGGCATCGACC-CGATAGATGAAAGCCAG
** **
80935078 ATGTAAGACCTGTCTGGGACATGGCATCGACTTTGAT-G-TGCTAGCCAG
1 -TGTAAGACCTGTCTGGGACATGGCATCGAC-CCGATAGATGAAAGCCAG
80935126 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGACC-TGTCTGGGACATGGCATCG
80935155 GCATCTTATC
Statistics
Matches: 99, Mismatches: 21, Indels: 11
0.76 0.16 0.08
Matches are distributed among these distances:
47 14 0.14
48 22 0.22
49 63 0.64
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (48 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACCCGATAGATGAAAGCCAG
Found at i:80939504 original size:43 final size:43
Alignment explanation
Indices: 80939447--80939562 Score: 124
Period size: 43 Copynumber: 2.7 Consensus size: 43
80939437 CAATGTCATA
* * * *
80939447 TCCCAAACATGGTCTTACATGTTACCACATATCAATGCCACTG
1 TCCCAGACATGGTCTTACATGTAACCACATAACAATGCCAATG
* *** * * *
80939490 TCCCAGACAGGGTCTTACACAAAATCATATAACGATGCCAATG
1 TCCCAGACATGGTCTTACATGTAACCACATAACAATGCCAATG
*
80939533 TCCCAGACATGGTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACATGTAACCACAT
80939563 CTTAATAACC
Statistics
Matches: 57, Mismatches: 16, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
43 57 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAACCACATAACAATGCCAATG
Found at i:80941589 original size:69 final size:69
Alignment explanation
Indices: 80941303--80941588 Score: 376
Period size: 69 Copynumber: 4.1 Consensus size: 69
80941293 AGAATCTTTA
*
80941303 TTAGTGAGAGCAAAGCTCCCAACTATCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCTAAC
1 TTAGCGAGAGCAAAGCTCCCAACTATCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCTAAC
*
80941368 ACAG
66 ATAG
* * * * *
80941372 TTAGCGAGAGCAAAGCTCCTAGCTATCATATTAAGGCTCGTAGGATAAAAATCGCAGCCTTTAAC
1 TTAGCGAGAGCAAAGCTCCCAACTATCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCTAAC
80941437 ATAG
66 ATAG
* * * * *
80941441 TTAGCGAGAGCAAAGCACCCAATTGTCATATTAAGGCTCGCAGGATAAAATTAGTAGCCTCTAAC
1 TTAGCGAGAGCAAAGCTCCCAACTATCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCTAAC
80941506 ATAG
66 ATAG
* * * * * * * *
80941510 TTAGCGAGAGTAAAGCTCCCAATTGTCACACTAAGGCTCGTAGGATAAAGA-CTGTAGCCTCCAA
1 TTAGCGAGAGCAAAGCTCCCAACTATCATATTAAGGCTCGCAGGATAAAAATC-GTAGCCTCTAA
80941574 CATAG
65 CATAG
80941579 TTAGCGAGAG
1 TTAGCGAGAG
80941589 TTGAAAACTC
Statistics
Matches: 190, Mismatches: 26, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
69 190 1.00
ACGTcount: A:0.35, C:0.21, G:0.21, T:0.23
Consensus pattern (69 bp):
TTAGCGAGAGCAAAGCTCCCAACTATCATATTAAGGCTCGCAGGATAAAAATCGTAGCCTCTAAC
ATAG
Found at i:80955917 original size:18 final size:19
Alignment explanation
Indices: 80955887--80955922 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
80955877 TTTACCTTTT
80955887 TTTTATATTTATTTTTATG
1 TTTTATATTTATTTTTATG
80955906 TTTTAT-TTTATTTTTAT
1 TTTTATATTTATTTTTAT
80955923 TAACCACTTG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 11 0.65
19 6 0.35
ACGTcount: A:0.19, C:0.00, G:0.03, T:0.78
Consensus pattern (19 bp):
TTTTATATTTATTTTTATG
Done.