Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 237 of 297
Found at i:80960085 original size:162 final size:162
Alignment explanation
Indices: 80959812--80960135 Score: 549
Period size: 162 Copynumber: 2.0 Consensus size: 162
80959802 AGGCATTTAG
* * *
80959812 AATCCTGAAAATCAACAAGACCAATCTAGCATCACTCATCTGTCAACTCAACATGACAACTACAT
1 AATCCCGAAAATCAACAAGACCAATCTAACATCACTCATCTATCAACTCAACATGACAACTACAT
80959877 TCATAATAAAGGATGAGTGATACATTCCACTACAGAATGTATAAAGGCAAAGCTAAACAAGCTGA
66 TCATAATAAAGGATGAGTGATACATTCCACTACAGAATGTATAAAGGCAAAGCTAAACAAGCTGA
* *
80959942 GCTTTGAAGCAATAAATCAAAAGTTAGTCACT
131 ACTTTGAAGCAATAAATCAAAAGTTAGCCACT
* *
80959974 AATCCCGAAAATCAACAAGACCAATCTAACATCACTCATCTATCGACTCAACATGACACCTACAT
1 AATCCCGAAAATCAACAAGACCAATCTAACATCACTCATCTATCAACTCAACATGACAACTACAT
* * * *
80960039 TCGTAATAAAGGATGAGTTATACATTCCACTACATAATGTATAAAGGCAAAGCTAAACAAGTTGA
66 TCATAATAAAGGATGAGTGATACATTCCACTACAGAATGTATAAAGGCAAAGCTAAACAAGCTGA
80960104 ACTTTGAAGCAATAAATCAAAAGTTAGCCACT
131 ACTTTGAAGCAATAAATCAAAAGTTAGCCACT
80960136 CAAAAAATTT
Statistics
Matches: 151, Mismatches: 11, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
162 151 1.00
ACGTcount: A:0.43, C:0.22, G:0.13, T:0.23
Consensus pattern (162 bp):
AATCCCGAAAATCAACAAGACCAATCTAACATCACTCATCTATCAACTCAACATGACAACTACAT
TCATAATAAAGGATGAGTGATACATTCCACTACAGAATGTATAAAGGCAAAGCTAAACAAGCTGA
ACTTTGAAGCAATAAATCAAAAGTTAGCCACT
Found at i:80963468 original size:21 final size:22
Alignment explanation
Indices: 80963428--80963468 Score: 57
Period size: 22 Copynumber: 1.9 Consensus size: 22
80963418 AAATATTGTA
* *
80963428 AAAATATTTTTCTTTGATAACC
1 AAAATATGTTTCTATGATAACC
80963450 AAAATATGTTT-TATGATAA
1 AAAATATGTTTCTATGATAA
80963469 GATAATATCT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 7 0.41
22 10 0.59
ACGTcount: A:0.41, C:0.07, G:0.07, T:0.44
Consensus pattern (22 bp):
AAAATATGTTTCTATGATAACC
Found at i:80964108 original size:20 final size:20
Alignment explanation
Indices: 80964073--80964115 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
80964063 TTTTTTCTAA
*
80964073 TAAAATATTAAGAATATTACT
1 TAAAATATTAAAAATATTA-T
80964094 TAAAAT-TTAAAAATATTAT
1 TAAAATATTAAAAATATTAT
80964113 TAA
1 TAA
80964116 TGTTAAAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
19 4 0.19
20 11 0.52
21 6 0.29
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TAAAATATTAAAAATATTAT
Found at i:80964139 original size:18 final size:19
Alignment explanation
Indices: 80964107--80964143 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
80964097 AATTTAAAAA
*
80964107 TATTATTAATGTTAAAATT
1 TATTATTAATATTAAAATT
80964126 TATTATTAA-ATTAAAATT
1 TATTATTAATATTAAAATT
80964144 GTAATATTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 8 0.47
19 9 0.53
ACGTcount: A:0.46, C:0.00, G:0.03, T:0.51
Consensus pattern (19 bp):
TATTATTAATATTAAAATT
Found at i:80971445 original size:51 final size:51
Alignment explanation
Indices: 80971369--80971536 Score: 273
Period size: 51 Copynumber: 3.3 Consensus size: 51
80971359 CGGATCACAT
80971369 TTATCACTTGTCACTTGTCACTGATCAGATACGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATACGTGTAGCTAAAGCTACCAC
80971420 TTATCACTTGTCACTTGTCACTGATCAGATACGTGTAGCTAAAGCTACCAC
1 TTATCACTTGTCACTTGTCACTGATCAGATACGTGTAGCTAAAGCTACCAC
* * * * * * *
80971471 TTATCACTTGTCACTTGTCACTGATCAGATAAGTGTAGTTGAGGTTGCGAC
1 TTATCACTTGTCACTTGTCACTGATCAGATACGTGTAGCTAAAGCTACCAC
80971522 TTATCACTTGTCACT
1 TTATCACTTGTCACT
80971537 GATTAGAAGT
Statistics
Matches: 110, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 110 1.00
ACGTcount: A:0.26, C:0.23, G:0.17, T:0.34
Consensus pattern (51 bp):
TTATCACTTGTCACTTGTCACTGATCAGATACGTGTAGCTAAAGCTACCAC
Found at i:80976082 original size:46 final size:46
Alignment explanation
Indices: 80976032--80976207 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
80976022 TGGTTGAGCA
80976032 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
80976078 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
80976123 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
80976171 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
80976208 GCGGGTTACA
Statistics
Matches: 109, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 63 0.58
47 29 0.27
48 3 0.03
50 3 0.03
51 2 0.02
ACGTcount: A:0.21, C:0.21, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:80976188 original size:93 final size:93
Alignment explanation
Indices: 80976029--80976200 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
80976019 GGATGGTTGA
* *
80976029 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80976094 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
*
80976122 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
80976187 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
80976201 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:80998547 original size:27 final size:27
Alignment explanation
Indices: 80998517--80998580 Score: 110
Period size: 27 Copynumber: 2.4 Consensus size: 27
80998507 ATTGATTTAA
80998517 TCAATTAATTAAATTAAATTAATTATC
1 TCAATTAATTAAATTAAATTAATTATC
*
80998544 TCAATTAATTTAATTAAATTAATTATC
1 TCAATTAATTAAATTAAATTAATTATC
*
80998571 TAAATTAATT
1 TCAATTAATT
80998581 TCTCAATTAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
27 35 1.00
ACGTcount: A:0.47, C:0.06, G:0.00, T:0.47
Consensus pattern (27 bp):
TCAATTAATTAAATTAAATTAATTATC
Found at i:80998551 original size:13 final size:13
Alignment explanation
Indices: 80998531--80998590 Score: 70
Period size: 13 Copynumber: 4.6 Consensus size: 13
80998521 TTAATTAAAT
80998531 TAAATTAATTATC
1 TAAATTAATTATC
*
80998544 TCAATTAATTTAAT-
1 TAAATTAA-TT-ATC
80998558 TAAATTAATTATC
1 TAAATTAATTATC
80998571 TAAATTAATT-TC
1 TAAATTAATTATC
*
80998583 TCAATTAA
1 TAAATTAA
80998591 ATAATTTTCT
Statistics
Matches: 41, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
12 11 0.27
13 19 0.46
14 9 0.22
15 2 0.05
ACGTcount: A:0.45, C:0.08, G:0.00, T:0.47
Consensus pattern (13 bp):
TAAATTAATTATC
Found at i:81002449 original size:6 final size:6
Alignment explanation
Indices: 81002438--81002462 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
81002428 AGTAAAATAA
81002438 ATTTTT ATTTTT ATTTTT ATTTTT A
1 ATTTTT ATTTTT ATTTTT ATTTTT A
81002463 GCTCGAATTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (6 bp):
ATTTTT
Found at i:81004647 original size:54 final size:54
Alignment explanation
Indices: 81004571--81004678 Score: 207
Period size: 54 Copynumber: 2.0 Consensus size: 54
81004561 ACCCTTTGAC
*
81004571 AAATCTCCGATAATATCTCGCTAGTCCCAGAAAACTTCTAATTTTTGAAACATT
1 AAATCTCCGATAATATCCCGCTAGTCCCAGAAAACTTCTAATTTTTGAAACATT
81004625 AAATCTCCGATAATATCCCGCTAGTCCCAGAAAACTTCTAATTTTTGAAACATT
1 AAATCTCCGATAATATCCCGCTAGTCCCAGAAAACTTCTAATTTTTGAAACATT
81004679 CTTCGGTGGC
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.35, C:0.23, G:0.09, T:0.32
Consensus pattern (54 bp):
AAATCTCCGATAATATCCCGCTAGTCCCAGAAAACTTCTAATTTTTGAAACATT
Found at i:81008029 original size:19 final size:19
Alignment explanation
Indices: 81008002--81008039 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81007992 TTATTTTTAT
* *
81008002 TTTTTATTAGAATCGAAAA
1 TTTTAATTAGAATAGAAAA
81008021 TTTTAATTAGAATAGAAAA
1 TTTTAATTAGAATAGAAAA
81008040 GTGGAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.47, C:0.03, G:0.11, T:0.39
Consensus pattern (19 bp):
TTTTAATTAGAATAGAAAA
Found at i:81010650 original size:47 final size:47
Alignment explanation
Indices: 81010579--81011038 Score: 785
Period size: 47 Copynumber: 9.7 Consensus size: 47
81010569 CCCTTTGGGA
* * * * * * *
81010579 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81010626 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81010673 CCTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81010722 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81010769 CCTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81010816 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81010863 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
81010910 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81010957 CTTATAACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
81011004 CTTATAACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
81011039 AGAATCCTAA
Statistics
Matches: 401, Mismatches: 10, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
47 354 0.88
49 47 0.12
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:81014020 original size:40 final size:39
Alignment explanation
Indices: 81013922--81014184 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
81013912 TCCTCGTTCA
* * * *
81013922 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
81013961 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81014000 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81014040 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
81014080 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
81014120 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
81014161 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81014185 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:81014144 original size:120 final size:119
Alignment explanation
Indices: 81013922--81014184 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
81013912 TCCTCGTTCA
* * *
81013922 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
81013987 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
81014040 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
81014105 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
81014161 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
81014185 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:81014193 original size:41 final size:41
Alignment explanation
Indices: 81014116--81014193 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81014106 TTTGTATCTC
* * *
81014116 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81014157 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81014194 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81016496 original size:5 final size:5
Alignment explanation
Indices: 81016486--81016526 Score: 82
Period size: 5 Copynumber: 8.2 Consensus size: 5
81016476 GATTCCAACC
81016486 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
1 ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA ATAAA A
81016527 GAAATTTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 36 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (5 bp):
ATAAA
Found at i:81019913 original size:12 final size:12
Alignment explanation
Indices: 81019896--81019920 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
81019886 TAGGTTTCCA
81019896 AAAATGGAAATG
1 AAAATGGAAATG
81019908 AAAATGGAAATG
1 AAAATGGAAATG
81019920 A
1 A
81019921 TCCATTTGCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.00, G:0.24, T:0.16
Consensus pattern (12 bp):
AAAATGGAAATG
Found at i:81022244 original size:24 final size:24
Alignment explanation
Indices: 81022212--81022282 Score: 115
Period size: 24 Copynumber: 3.0 Consensus size: 24
81022202 CTATCAGGAG
81022212 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
81022236 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGTTGATAAGGGAT
* **
81022260 AGGATTTAAGAGCAGATAAGGGA
1 AGGATTTAGGAGTTGATAAGGGA
81022283 GGAAATCTAG
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
24 44 1.00
ACGTcount: A:0.37, C:0.01, G:0.37, T:0.25
Consensus pattern (24 bp):
AGGATTTAGGAGTTGATAAGGGAT
Found at i:81023566 original size:26 final size:27
Alignment explanation
Indices: 81023506--81023616 Score: 118
Period size: 27 Copynumber: 4.1 Consensus size: 27
81023496 AGGAAGCCTC
* *
81023506 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* * *
81023533 CTGATGGCTCTACCAC-ATTTTCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
* *
81023559 CTGGTGGCTCTGCCACGATTATTTGTAT
1 CTGGTGGCTCTGCCACAATTATCTGT-T
* *
81023587 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGTT
81023613 CTGG
1 CTGG
81023617 CAGCCATGCT
Statistics
Matches: 70, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
26 27 0.39
27 28 0.40
28 15 0.21
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGTT
Found at i:81023613 original size:54 final size:53
Alignment explanation
Indices: 81023506--81023616 Score: 141
Period size: 54 Copynumber: 2.1 Consensus size: 53
81023496 AGGAAGCCTC
* *
81023506 CTGGTGGCTATGCCACAATTATCTGATCTGATGGCTCTACCACATTTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTACCACATTATCTGTT
* * * * **
81023559 CTGGTGGCTCTGCCACGATTATTTGTATCTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGATGACTCTACCACATTATCTGTT
81023613 CTGG
1 CTGG
81023617 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 8, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 22 0.45
54 27 0.55
ACGTcount: A:0.16, C:0.23, G:0.22, T:0.39
Consensus pattern (53 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGATGACTCTACCACATTATCTGTT
Found at i:81027167 original size:56 final size:56
Alignment explanation
Indices: 81027081--81027193 Score: 199
Period size: 56 Copynumber: 2.0 Consensus size: 56
81027071 TTCATCAAAT
* *
81027081 ATCCCCACAATTAAGCATTTTCTTGTCTTCAAGCAAAATCCTCAACTCATAATTAA
1 ATCCCCACAATTAAGCATTTGCTTGTCTTCAAGCAAAATCCTCAACTCACAATTAA
*
81027137 ATCCCCACACTTAAGCATTTGCTTGTCTTCAAGCAAAATCCTCAACTCACAATTAA
1 ATCCCCACAATTAAGCATTTGCTTGTCTTCAAGCAAAATCCTCAACTCACAATTAA
81027193 A
1 A
81027194 ATTAAACTTC
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.35, C:0.28, G:0.06, T:0.30
Consensus pattern (56 bp):
ATCCCCACAATTAAGCATTTGCTTGTCTTCAAGCAAAATCCTCAACTCACAATTAA
Found at i:81028772 original size:6 final size:6
Alignment explanation
Indices: 81028761--81028822 Score: 63
Period size: 6 Copynumber: 10.2 Consensus size: 6
81028751 CAAGAAGAAT
* * * *
81028761 AAAATA AAAATA AAAGTA AAAATA AAAGACA AAAATA AAGATA AACATA
1 AAAATA AAAATA AAAATA AAAATA AAA-ATA AAAATA AAAATA AAAATA
81028810 AACAA-A AAAATA A
1 AA-AATA AAAATA A
81028823 TTGGCCTTAA
Statistics
Matches: 46, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
5 2 0.04
6 38 0.83
7 6 0.13
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.13
Consensus pattern (6 bp):
AAAATA
Found at i:81028773 original size:23 final size:23
Alignment explanation
Indices: 81028758--81028822 Score: 60
Period size: 25 Copynumber: 2.7 Consensus size: 23
81028748 TAACAAGAAG
81028758 AATAAAATAAAAATAAAAGTAAA
1 AATAAAATAAAAATAAAAGTAAA
*
81028781 AATAAAAGACAAAA-ATAAAGATAAA
1 AATAAAATA-AAAATA-AAAG-TAAA
* *
81028806 CATAAACAAAAAAATAA
1 AATAAA-ATAAAAATAA
81028823 TTGGCCTTAA
Statistics
Matches: 34, Mismatches: 3, Indels: 8
0.76 0.07 0.18
Matches are distributed among these distances:
23 9 0.26
24 8 0.24
25 14 0.41
26 3 0.09
ACGTcount: A:0.77, C:0.05, G:0.05, T:0.14
Consensus pattern (23 bp):
AATAAAATAAAAATAAAAGTAAA
Found at i:81040569 original size:24 final size:24
Alignment explanation
Indices: 81040533--81040578 Score: 74
Period size: 24 Copynumber: 1.9 Consensus size: 24
81040523 GTTTTATGGA
81040533 ACACTAAACTAGACTACGATCATG
1 ACACTAAACTAGACTACGATCATG
* *
81040557 ACACTAAATTAGACTATGATCA
1 ACACTAAACTAGACTACGATCA
81040579 CGACTAAGGC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.43, C:0.22, G:0.11, T:0.24
Consensus pattern (24 bp):
ACACTAAACTAGACTACGATCATG
Found at i:81042130 original size:43 final size:43
Alignment explanation
Indices: 81042013--81042154 Score: 139
Period size: 41 Copynumber: 3.4 Consensus size: 43
81042003 TCAACGTCTT
* * *
81042013 AGACGTGGTCTTACATGCAA-CACATATCGATGCCACTGTCCC
1 AGACATGGTCTTACACGCAACCACATATCGATGCCAATGTCCC
* * * * *
81042055 AG-CAGGGTTTTACACGGATCTA-ATA-CGATGCCAATGTCCC
1 AGACATGGTCTTACACGCAACCACATATCGATGCCAATGTCCC
* *
81042095 AGACATGGTCTTACACGTAACCACATATCGATGCCAACGTCCC
1 AGACATGGTCTTACACGCAACCACATATCGATGCCAATGTCCC
** *
81042138 AGATGTGGTCTTCCACG
1 AGACATGGTCTTACACG
81042155 AGAACAAATA
Statistics
Matches: 79, Mismatches: 17, Indels: 7
0.77 0.17 0.07
Matches are distributed among these distances:
40 16 0.20
41 29 0.37
42 6 0.08
43 28 0.35
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (43 bp):
AGACATGGTCTTACACGCAACCACATATCGATGCCAATGTCCC
Found at i:81042435 original size:42 final size:42
Alignment explanation
Indices: 81042386--81042469 Score: 159
Period size: 42 Copynumber: 2.0 Consensus size: 42
81042376 TTACCTCGGA
*
81042386 CAACGATAATTAGAACGGAACAACTAATCGACAACTTTGGTT
1 CAACGATAATCAGAACGGAACAACTAATCGACAACTTTGGTT
81042428 CAACGATAATCAGAACGGAACAACTAATCGACAACTTTGGTT
1 CAACGATAATCAGAACGGAACAACTAATCGACAACTTTGGTT
81042470 TTCCCCCAAT
Statistics
Matches: 41, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 41 1.00
ACGTcount: A:0.40, C:0.20, G:0.17, T:0.23
Consensus pattern (42 bp):
CAACGATAATCAGAACGGAACAACTAATCGACAACTTTGGTT
Found at i:81045040 original size:47 final size:46
Alignment explanation
Indices: 81044811--81045072 Score: 151
Period size: 46 Copynumber: 5.6 Consensus size: 46
81044801 TTCGTGTGTG
* * * * * *
81044811 AGCTAGTGTATGACATGTCTGGGACATGCATCGGC-CACATTACGA-G
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCGACTC-GA-GACGATA
* * * * *
81044857 AGCCAGTGTAAGACCATGTCTAGGGCATGGCATCGATATTGAGACGA-G
1 AGCTAGTGTAAGA-CATGTCTAGGACAT-GCATCGA-CTCGAGACGATA
* * * * *
81044905 GGTTAGTGTAAGACATGTCTGGGACATGCATAGGCCTCGAGACG-TA
1 AGCTAGTGTAAGACATGTCTAGGACATGCAT-CGACTCGAGACGATA
* * *
81044951 AACTAGTGTAAGACATGTCTAGGACATGCATCGGCTACGAGATGAT-
1 AGCTAGTGTAAGACATGTCTAGGACATGCATCGACT-CGAGACGATA
* * * * *
81044997 AGTTAGTGTAAGACCATGTCT-GGCACATGGCATTGACTTGAGA-TATG
1 AGCTAGTGTAAGA-CATGTCTAGG-ACAT-GCATCGACTCGAGACGATA
*
81045044 AGCTAGTGTAAGATCGTGTCTAGGACATG
1 AGCTAGTGTAAGA-CATGTCTAGGACATG
81045073 ACATAGGCAC
Statistics
Matches: 168, Mismatches: 35, Indels: 26
0.73 0.15 0.11
Matches are distributed among these distances:
45 3 0.02
46 71 0.42
47 63 0.38
48 30 0.18
49 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTAGGACATGCATCGACTCGAGACGATA
Found at i:81045050 original size:93 final size:93
Alignment explanation
Indices: 81044856--81045072 Score: 224
Period size: 93 Copynumber: 2.3 Consensus size: 93
81044846 CACATTACGA
* * * *
81044856 GAGCCAGTGTAAGACCATGTCTAGGGCATGGCATCGATATTGAGACGAGGGTTAGTGTAAGACAT
1 GAGCTAGTGTAAGACCATGTCTAGGACAT-GCATCGATATCGAGACGAGAGTTAGTGTAAGACAT
* * *
81044921 GTCTGGGACATGCATAGGCCTCGAGACGT
65 GTCTGGCACATGCATAGGACTCGAGACAT
* * * * *
81044950 AAACTAGTGTAAGA-CATGTCTAGGACATGCATCGGCTA-CGAGATGATAGTTAGTGTAAGACCA
1 GAGCTAGTGTAAGACCATGTCTAGGACATGCATC-GATATCGAGACGAGAGTTAGTGTAAGA-CA
* * *
81045013 TGTCTGGCACATGGCAT-TGACTTGAGATAT
64 TGTCTGGCACAT-GCATAGGACTCGAGACAT
* *
81045043 GAGCTAGTGTAAGATCGTGTCTAGGACATG
1 GAGCTAGTGTAAGACCATGTCTAGGACATG
81045073 ACATAGGCAC
Statistics
Matches: 101, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
92 23 0.23
93 49 0.49
94 29 0.29
ACGTcount: A:0.29, C:0.17, G:0.30, T:0.25
Consensus pattern (93 bp):
GAGCTAGTGTAAGACCATGTCTAGGACATGCATCGATATCGAGACGAGAGTTAGTGTAAGACATG
TCTGGCACATGCATAGGACTCGAGACAT
Found at i:81045064 original size:140 final size:141
Alignment explanation
Indices: 81044813--81045080 Score: 321
Period size: 140 Copynumber: 1.9 Consensus size: 141
81044803 CGTGTGTGAG
* * *
81044813 CTAGTGTATGACATGTCTGGGACATGCATCGGCCACATTACGAGAGCCAGTGTAAGACCATGTCT
1 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCT
* * * *
81044878 AGGGCATGGCATCGATATTGAGACGAGGGTTAGTGTAAGACATGTCTGGGACATG-CATAGGCCT
66 AGGACATGGCATCGATATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGACATAGGCCT
81044942 CGAGACGTAAA
131 CGAGACGTAAA
* * * **
81044953 CTAGTGTAAGACATGTCTAGGACATGCATCGGCTACGA-GATGATAGTTAGTGTAAGACCATGTC
1 CTAGTGTAAGACATGTCTAGGACATGCATCGGCCAC-ATGACGAGAGCCAGTGTAAGACCATGTC
* * * *
81045017 T-GGCACATGGCATTGA-CTTGAGA-TATGAGCTAGTGTAAGATCGTGTCTAGGACATGACATAG
65 TAGG-ACATGGCATCGATATTGAGACGA-GAGCTAGTGTAAGA-CATGTCTAGGACATGACATAG
81045079 GC
127 GC
81045081 ACCTTACCCT
Statistics
Matches: 107, Mismatches: 16, Indels: 9
0.81 0.12 0.07
Matches are distributed among these distances:
138 1 0.01
139 20 0.19
140 78 0.73
141 8 0.07
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (141 bp):
CTAGTGTAAGACATGTCTAGGACATGCATCGGCCACATGACGAGAGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGATATTGAGACGAGAGCTAGTGTAAGACATGTCTAGGACATGACATAGGCCT
CGAGACGTAAA
Found at i:81054972 original size:27 final size:27
Alignment explanation
Indices: 81054918--81055027 Score: 134
Period size: 27 Copynumber: 4.1 Consensus size: 27
81054908 AGCATGGCTG
* *
81054918 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
81054944 CCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
81054971 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * * * *
81054998 CCCGATCAGATAATTATGGCATATCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
81055025 CCA
1 CCA
81055028 AGACGCTTCC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
26 15 0.21
27 56 0.77
28 2 0.03
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:81055008 original size:54 final size:53
Alignment explanation
Indices: 81054918--81055027 Score: 148
Period size: 54 Copynumber: 2.1 Consensus size: 53
81054908 AGCATGGCTG
* *
81054918 CCAGAACAGATAATGTGACAGAGTCACCAGAACAGATAATTGTGGCAGAGCCA
1 CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTATGGCAGAGCCA
* * * * *
81054971 CCAGAACAGATATATGTGGCAGAGCCACCCGATCAGATAATTATGGCATATCCA
1 CCAGAACAGATA-ATGTGACAGAGCCACCAGAACAGATAATTATGGCAGAGCCA
81055025 CCA
1 CCA
81055028 AGACGCTTCC
Statistics
Matches: 49, Mismatches: 7, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 12 0.24
54 37 0.76
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.17
Consensus pattern (53 bp):
CCAGAACAGATAATGTGACAGAGCCACCAGAACAGATAATTATGGCAGAGCCA
Found at i:81056227 original size:16 final size:16
Alignment explanation
Indices: 81056203--81056234 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
81056193 TAAAAGAGAC
81056203 AGAAAAGATGAGCAGA
1 AGAAAAGATGAGCAGA
*
81056219 AGAAGAGATGAGCAGA
1 AGAAAAGATGAGCAGA
81056235 GAATTTAGTT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.53, C:0.06, G:0.34, T:0.06
Consensus pattern (16 bp):
AGAAAAGATGAGCAGA
Found at i:81057074 original size:38 final size:38
Alignment explanation
Indices: 81057023--81057206 Score: 242
Period size: 38 Copynumber: 4.8 Consensus size: 38
81057013 GATGTGTATT
*
81057023 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
*
81057061 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
*
81057099 CGAGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
1 CGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
* * * * *
81057137 AGGGTTAAATCTTGTAGGCCTAGTGCTGGTATTATATC
1 CGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
* * * *
81057175 TGAGCTTAAAGTCCTGCAGGTTTTGTGCTGGT
1 CG-GGTTAAA-TCCTGCAGGCTTCGTGCTGGT
81057207 GACTGGATTC
Statistics
Matches: 129, Mismatches: 15, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
38 107 0.83
39 6 0.05
40 16 0.12
ACGTcount: A:0.20, C:0.20, G:0.27, T:0.34
Consensus pattern (38 bp):
CGGGTTAAATCCTGCAGGCTTCGTGCTGGTATTATATC
Found at i:81060642 original size:38 final size:38
Alignment explanation
Indices: 81060587--81060659 Score: 128
Period size: 38 Copynumber: 1.9 Consensus size: 38
81060577 AGTTCATCTT
* *
81060587 TCATAGCCTCAATTAATGATCATTACATTCACTCTCCA
1 TCATAGACTCAACTAATGATCATTACATTCACTCTCCA
81060625 TCATAGACTCAACTAATGATCATTACATTCACTCT
1 TCATAGACTCAACTAATGATCATTACATTCACTCT
81060660 TCATGGCCTC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 33 1.00
ACGTcount: A:0.33, C:0.27, G:0.05, T:0.34
Consensus pattern (38 bp):
TCATAGACTCAACTAATGATCATTACATTCACTCTCCA
Found at i:81064457 original size:14 final size:14
Alignment explanation
Indices: 81064438--81064475 Score: 58
Period size: 14 Copynumber: 2.7 Consensus size: 14
81064428 GTTTGCTAGT
*
81064438 AAAATGTTTTCCGG
1 AAAATGATTTCCGG
*
81064452 AAAATGATTTCTGG
1 AAAATGATTTCCGG
81064466 AAAATGATTT
1 AAAATGATTT
81064476 ACTTTTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.37, C:0.08, G:0.18, T:0.37
Consensus pattern (14 bp):
AAAATGATTTCCGG
Found at i:81064491 original size:19 final size:20
Alignment explanation
Indices: 81064459--81064504 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
81064449 CGGAAAATGA
81064459 TTTCTGGAAAATGATTTACT
1 TTTCTGGAAAATGATTTACT
*
81064479 TTTCTGG-AAATGATTTGCT
1 TTTCTGGAAAATGATTTACT
81064498 TTTCTGG
1 TTTCTGG
81064505 TGTTTGGATG
Statistics
Matches: 25, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.22, C:0.11, G:0.20, T:0.48
Consensus pattern (20 bp):
TTTCTGGAAAATGATTTACT
Found at i:81064606 original size:18 final size:19
Alignment explanation
Indices: 81064580--81064624 Score: 56
Period size: 20 Copynumber: 2.4 Consensus size: 19
81064570 AAAAACTGTT
*
81064580 TTTACATATA-TTAATAAA
1 TTTATATATACTTAATAAA
81064598 TTTATATATATCTTAATAAA
1 TTTATATATA-CTTAATAAA
*
81064618 ATTATAT
1 TTTATAT
81064625 TTTAAATTAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
18 9 0.39
20 14 0.61
ACGTcount: A:0.47, C:0.04, G:0.00, T:0.49
Consensus pattern (19 bp):
TTTATATATACTTAATAAA
Found at i:81064613 original size:20 final size:20
Alignment explanation
Indices: 81064585--81064624 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
81064575 CTGTTTTTAC
*
81064585 ATATATTAATAAATTTATAT
1 ATATATTAATAAAATTATAT
*
81064605 ATATCTTAATAAAATTATAT
1 ATATATTAATAAAATTATAT
81064625 TTTAAATTAT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.47
Consensus pattern (20 bp):
ATATATTAATAAAATTATAT
Found at i:81067236 original size:39 final size:40
Alignment explanation
Indices: 81067141--81067363 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
81067131 TTGAATGATG
*
81067141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
81067179 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
81067220 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
81067259 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
81067298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
81067337 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
81067364 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:81067327 original size:79 final size:81
Alignment explanation
Indices: 81067141--81067363 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
81067131 TTGAATGATG
* * *
81067141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
81067203 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
81067220 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
81067281 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
81067298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
81067362 TG
66 TG
81067364 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:81067385 original size:79 final size:79
Alignment explanation
Indices: 81067141--81067396 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
81067131 TTGAATGATG
* * * *
81067141 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
81067202 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
81067220 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
81067284 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
81067298 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
81067361 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
81067378 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
81067397 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:81071660 original size:138 final size:138
Alignment explanation
Indices: 81071412--81071686 Score: 505
Period size: 138 Copynumber: 2.0 Consensus size: 138
81071402 TTTTCCAAAG
*
81071412 TCAGAACAGGGGATCACGTAATCATTCTGAATCAGTCTCACGAAAACATAAATATCTCAAAATAT
1 TCAGAACAGGGGATCACGTAATCATTCTAAATCAGTCTCACGAAAACATAAATATCTCAAAATAT
*
81071477 AGAACTCTTTTGCTTTATATGTTTCTTTTATATGAAAATAGACTCATTAAAATTTAATTTGATAT
66 AGAACTCCTTTGCTTTATATGTTTCTTTTATATGAAAATAGACTCATTAAAATTTAATTTGATAT
81071542 CTCATTCT
131 CTCATTCT
*
81071550 TCAGAATAGGGGATCACGTAATCATTCTAAATCAGTCTCACGAAAACATAAATATCTCAAAATAT
1 TCAGAACAGGGGATCACGTAATCATTCTAAATCAGTCTCACGAAAACATAAATATCTCAAAATAT
* *
81071615 AGAACTCCTTTGCTTTCTATGTTTCTTTTATATGAAAATAGACTCATTAAGATTTAATTTGATAT
66 AGAACTCCTTTGCTTTATATGTTTCTTTTATATGAAAATAGACTCATTAAAATTTAATTTGATAT
81071680 CTCATTC
131 CTCATTC
81071687 AGTCTCTGAT
Statistics
Matches: 132, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
138 132 1.00
ACGTcount: A:0.36, C:0.16, G:0.11, T:0.37
Consensus pattern (138 bp):
TCAGAACAGGGGATCACGTAATCATTCTAAATCAGTCTCACGAAAACATAAATATCTCAAAATAT
AGAACTCCTTTGCTTTATATGTTTCTTTTATATGAAAATAGACTCATTAAAATTTAATTTGATAT
CTCATTCT
Found at i:81073041 original size:30 final size:30
Alignment explanation
Indices: 81073007--81073067 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
81072997 TCCTTAACTC
81073007 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
81073037 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
81073067 A
1 A
81073068 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:81077093 original size:45 final size:45
Alignment explanation
Indices: 81077042--81077156 Score: 144
Period size: 45 Copynumber: 2.6 Consensus size: 45
81077032 GTGTAACACT
* * *
81077042 ATAGTTGAAATATATTATGACATTAAATC-TTATACAAAT-AAGACC
1 ATAGTTGAAAGATACTATGACATTAAATCGGTA-AC-AATCAAGACC
* * *
81077087 ATAGTTGAAAGATACTATGGCATCACATCGGTAACAATCAAGACC
1 ATAGTTGAAAGATACTATGACATTAAATCGGTAACAATCAAGACC
81077132 ATAGTTGAAAGATACTATGACATTA
1 ATAGTTGAAAGATACTATGACATTA
81077157 CTTCAGGAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
44 3 0.05
45 55 0.92
46 2 0.03
ACGTcount: A:0.43, C:0.14, G:0.14, T:0.29
Consensus pattern (45 bp):
ATAGTTGAAAGATACTATGACATTAAATCGGTAACAATCAAGACC
Found at i:81077175 original size:45 final size:44
Alignment explanation
Indices: 81077042--81077200 Score: 140
Period size: 45 Copynumber: 3.5 Consensus size: 44
81077032 GTGTAACACT
* * * * ** *
81077042 ATAGTTGAAATATATTATGACATTAAATCTTATACAAATAAGACC
1 ATAGTTGAAAGATACTATGACATCACATCGGAAAC-AATAAGACC
* *
81077087 ATAGTTGAAAGATACTATGGCATCACATCGGTAACAATCAAGACC
1 ATAGTTGAAAGATACTATGACATCACATCGGAAACAAT-AAGACC
* *
81077132 ATAGTTGAAAGATACTATGACATTACTTCAGGAATAC-ATAAGACC
1 ATAGTTGAAAGATACTATGACATCACATC-GGAA-ACAATAAGACC
* * * *
81077177 ATGGTTGGAAGATACCATGGCATC
1 ATAGTTGAAAGATACTATGACATC
81077201 CTTTGAAACG
Statistics
Matches: 93, Mismatches: 18, Indels: 6
0.79 0.15 0.05
Matches are distributed among these distances:
44 3 0.03
45 83 0.89
46 5 0.05
47 2 0.02
ACGTcount: A:0.41, C:0.16, G:0.16, T:0.27
Consensus pattern (44 bp):
ATAGTTGAAAGATACTATGACATCACATCGGAAACAATAAGACC
Found at i:81079523 original size:21 final size:21
Alignment explanation
Indices: 81079499--81079546 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
81079489 CAAGAGATAC
*
81079499 AATTATCATTCATCACTCAAT
1 AATTATAATTCATCACTCAAT
*
81079520 AATTATAATTCATCAGTCAAT
1 AATTATAATTCATCACTCAAT
81079541 AATTAT
1 AATTAT
81079547 TTTCCAACAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.42, C:0.17, G:0.02, T:0.40
Consensus pattern (21 bp):
AATTATAATTCATCACTCAAT
Found at i:81082535 original size:36 final size:36
Alignment explanation
Indices: 81082493--81082564 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
81082483 TATGAAAATT
*
81082493 ATGATAAAGATATATGTGAGTCTAGTTTCTGGAAAA
1 ATGATAAAGATATATGTCAGTCTAGTTTCTGGAAAA
*
81082529 ATGATAAATATATATGTCAGTCTAGTTTCTGGAAAA
1 ATGATAAAGATATATGTCAGTCTAGTTTCTGGAAAA
81082565 TATTAACGGA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.39, C:0.07, G:0.19, T:0.35
Consensus pattern (36 bp):
ATGATAAAGATATATGTCAGTCTAGTTTCTGGAAAA
Found at i:81083930 original size:53 final size:53
Alignment explanation
Indices: 81083869--81083975 Score: 214
Period size: 53 Copynumber: 2.0 Consensus size: 53
81083859 AATCAATAGA
81083869 GATAACTCTAGTTGAGATCAATTATCTTATGGGATTGTGCCGACGACGCATGT
1 GATAACTCTAGTTGAGATCAATTATCTTATGGGATTGTGCCGACGACGCATGT
81083922 GATAACTCTAGTTGAGATCAATTATCTTATGGGATTGTGCCGACGACGCATGT
1 GATAACTCTAGTTGAGATCAATTATCTTATGGGATTGTGCCGACGACGCATGT
81083975 G
1 G
81083976 TCTCGACTTA
Statistics
Matches: 54, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
53 54 1.00
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (53 bp):
GATAACTCTAGTTGAGATCAATTATCTTATGGGATTGTGCCGACGACGCATGT
Found at i:81089437 original size:152 final size:151
Alignment explanation
Indices: 81089267--81089563 Score: 576
Period size: 152 Copynumber: 2.0 Consensus size: 151
81089257 GTCAACTACT
*
81089267 CCCCCCCCCCCCACTTTTTACAATCTCATGTAATTTAAGGTTGCCAATTATAATTTATACATTCC
1 CCCCCCCCCCCCAATTTTTACAATCTCATGTAATTTAAGGTTGCCAATTATAATTTATACATTCC
81089332 CCAAAATTCTCAAATTTTACTTCAAAGTAAATTTAGATGGGAGGTGCATTTTAAATTTAGATGGG
66 CCAAAATTCTCAAATTTTACTTCAAAGTAAATTTAGATGGGAGGTGCATTTTAAATTTAGATGGG
81089397 AGGTGATAATTAGTANACTCCC
131 AGGTGATAATTAGTA-ACTCCC
81089419 CCCCCCCCCCCCAATTTTTACAATCTCATGTAATTTAAGGTTGCCAATTATAATTTATACATTCC
1 CCCCCCCCCCCCAATTTTTACAATCTCATGTAATTTAAGGTTGCCAATTATAATTTATACATTCC
81089484 CCAAAATTCTCAAATTTTACTTCAAAGTAAATTTAGATGGGAGGTGCATTTTAAATTTAGATGGG
66 CCAAAATTCTCAAATTTTACTTCAAAGTAAATTTAGATGGGAGGTGCATTTTAAATTTAGATGGG
81089549 AGGTGATAATTAGTA
131 AGGTGATAATTAGTA
81089564 TAAAACCAAC
Statistics
Matches: 144, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
152 144 1.00
ACGTcount: A:0.32, C:0.20, G:0.13, T:0.35
Consensus pattern (151 bp):
CCCCCCCCCCCCAATTTTTACAATCTCATGTAATTTAAGGTTGCCAATTATAATTTATACATTCC
CCAAAATTCTCAAATTTTACTTCAAAGTAAATTTAGATGGGAGGTGCATTTTAAATTTAGATGGG
AGGTGATAATTAGTAACTCCC
Found at i:81093781 original size:21 final size:21
Alignment explanation
Indices: 81093755--81093802 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
81093745 ACAGTTGGGT
*
81093755 ACATGGGCGTGTGGAATG-GCC
1 ACATGGGCATGTGGAA-GAGCC
*
81093776 ACATGGGCATGTGGGAGAGCC
1 ACATGGGCATGTGGAAGAGCC
81093797 ACATGG
1 ACATGG
81093803 TTGTGTGACC
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 1 0.04
21 23 0.96
ACGTcount: A:0.23, C:0.19, G:0.42, T:0.17
Consensus pattern (21 bp):
ACATGGGCATGTGGAAGAGCC
Found at i:81104654 original size:13 final size:13
Alignment explanation
Indices: 81104636--81104662 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81104626 ACTAGTCAAG
81104636 ATGAGGAAGGGTT
1 ATGAGGAAGGGTT
81104649 ATGAGGAAGGGTT
1 ATGAGGAAGGGTT
81104662 A
1 A
81104663 GTCACAGTTG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.33, C:0.00, G:0.44, T:0.22
Consensus pattern (13 bp):
ATGAGGAAGGGTT
Found at i:81104992 original size:15 final size:15
Alignment explanation
Indices: 81104972--81105001 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
81104962 ACACAGTTTG
81104972 CTCAGCTATTCTACA
1 CTCAGCTATTCTACA
81104987 CTCAGCTATTCTACA
1 CTCAGCTATTCTACA
81105002 GAATAAACTA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.33, G:0.07, T:0.33
Consensus pattern (15 bp):
CTCAGCTATTCTACA
Found at i:81106516 original size:40 final size:40
Alignment explanation
Indices: 81106464--81106732 Score: 186
Period size: 40 Copynumber: 6.7 Consensus size: 40
81106454 ATAACCACAA
* * *
81106464 GCACAATTGCCTTCGGGTCTTAACCCGGGCATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGACATAGCAACTC
* * * *
81106504 GCACGAATGCCTTCGGGCCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGACATAGCAACTC
* * * * *
81106544 GCACAAATGCCTTCAGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-CATAGCAACTC
* * * * * *
81106584 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-CATAGCAACTC
* * * * * *
81106624 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-CATAGCAACTC
* * * * * *
81106664 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA-CATAGCAACTC
* *
81106704 GCATAAATGCCTTCGGGACTTAGCCCGGA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGA
81106733 TATCATTCAA
Statistics
Matches: 212, Mismatches: 16, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
40 208 0.98
41 4 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGACATAGCAACTC
Found at i:81106733 original size:40 final size:40
Alignment explanation
Indices: 81106509--81106734 Score: 382
Period size: 40 Copynumber: 5.7 Consensus size: 40
81106499 AACTCGCACG
* * * *
81106509 AATGCCTTCGGGCCTTAGCCCGGAT-ATATCAACTCGCACA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTAGCATA
* *
81106549 AATGCCTTCAGGTCTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
81106589 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
81106629 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
81106669 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
1 AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
81106709 AATGCCTTCGGGACTTAGCCCGGATA
1 AATGCCTTCGGGACTTAGCCCGGATA
81106735 TCATTCAAAT
Statistics
Matches: 178, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
40 174 0.98
41 4 0.02
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAGCCCGGATAAAATCACTAGCATA
Found at i:81110227 original size:262 final size:262
Alignment explanation
Indices: 81109762--81110286 Score: 1032
Period size: 262 Copynumber: 2.0 Consensus size: 262
81109752 ACAGACAAGT
81109762 GCACATTCATCGCTCGTAAAGCAAACAGTGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCC
1 GCACATTCATCGCTCGTAAAGCAAACAGTGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCC
81109827 TTTCCCGGGTGGTAATCAATGACAAGCTCATAATCTTTCAACAACTCAAGCCAACGTCTTTGTCG
66 TTTCCCGGGTGGTAATCAATGACAAGCTCATAATCTTTCAACAACTCAAGCCAACGTCTTTGTCG
81109892 CAGATTTAAGTCTCTTTGAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACATGGCACT
131 CAGATTTAAGTCTCTTTGAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACATGGCACT
81109957 TTTCACCAAATAAGTAATGTCGCCATATTTTTAAAGCGAATACGATGGCAGCTAGTTCGAGATCA
196 TTTCACCAAATAAGTAATGTCGCCATATTTTTAAAGCGAATACGATGGCAGCTAGTTCGAGATCA
81110022 TG
261 TG
81110024 GCACATTCATCGCTCGTAAAGCAAACAGTGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCC
1 GCACATTCATCGCTCGTAAAGCAAACAGTGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCC
* *
81110089 TTTCCCGGGTGGTAATCAATGACAAGCTCGTAATCTTTCAACAACTTAAGCCAACGTCTTTGTCG
66 TTTCCCGGGTGGTAATCAATGACAAGCTCATAATCTTTCAACAACTCAAGCCAACGTCTTTGTCG
81110154 CAGATTTAAGTCTCTTTGAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACATGGCACT
131 CAGATTTAAGTCTCTTTGAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACATGGCACT
81110219 TTTCACCAAATAAGTAATGTCGCCATATTTTTAAAGCGAATACGATGGCAGCTAGTTCGAGATCA
196 TTTCACCAAATAAGTAATGTCGCCATATTTTTAAAGCGAATACGATGGCAGCTAGTTCGAGATCA
81110284 TG
261 TG
81110286 G
1 G
81110287 GTCGGATAAT
Statistics
Matches: 261, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
262 261 1.00
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.29
Consensus pattern (262 bp):
GCACATTCATCGCTCGTAAAGCAAACAGTGATTTCCGGCTTAAGGCGTCCGCAACCACATTAGCC
TTTCCCGGGTGGTAATCAATGACAAGCTCATAATCTTTCAACAACTCAAGCCAACGTCTTTGTCG
CAGATTTAAGTCTCTTTGAGTCATCAAATATTTGAGACTTTTGTGATCCGAAAATACATGGCACT
TTTCACCAAATAAGTAATGTCGCCATATTTTTAAAGCGAATACGATGGCAGCTAGTTCGAGATCA
TG
Found at i:81114793 original size:40 final size:40
Alignment explanation
Indices: 81114692--81114835 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
81114682 CAAGCACAGT
* * * *
81114692 TGCCTTCGGGTCTTAACCCGGGTATAGCAACTCACACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
*
81114732 TG-CTTCAGGTCTTAGCCCGGATATATCAACTCGCACAAA
1 TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
* * *
81114771 TGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAA
1 TGCCTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAA
*
81114811 TGCCTTCGGGACTTAGCCCGGATAT
1 TGCCTTCGGGTCTTAGCCCGGATAT
81114836 CATTCAAATG
Statistics
Matches: 91, Mismatches: 11, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
39 35 0.38
40 52 0.57
41 4 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAA
Found at i:81124676 original size:50 final size:48
Alignment explanation
Indices: 81124616--81124748 Score: 151
Period size: 49 Copynumber: 2.7 Consensus size: 48
81124606 TAAGATGTGT
*
81124616 TAGTGTAAGACCATGTTTGGGACATGGCATCGACAC-CGATATATGAGAG
1 TAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTCGAT-TATGAGAG
* * ** * * *
81124665 CTAGTGTAAGACCATGTCTGGGGCATAGTGTCGGCCTCGATTTTGATAG
1 -TAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTATGAGAG
81124714 TCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 T-AGTGTAAGACCATGTCTGGGACATGGCATCGAC
81124749 TTGATGGATG
Statistics
Matches: 68, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
48 1 0.01
49 35 0.51
50 32 0.47
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (48 bp):
TAGTGTAAGACCATGTCTGGGACATGGCATCGACCTCGATTATGAGAG
Found at i:81126682 original size:27 final size:27
Alignment explanation
Indices: 81126642--81126753 Score: 138
Period size: 27 Copynumber: 4.1 Consensus size: 27
81126632 AGGAAGCGTC
*
81126642 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
81126669 CTGGTGGCTCTGCCACATATT-TCTGTT
1 CTGGTGGCTCTGCCACA-ATTATCTGAT
*
81126696 CTGGTGGCTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* * *
81126724 CTGGTGACTCTGTCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
81126750 CTGG
1 CTGG
81126754 CAGCCATGCT
Statistics
Matches: 75, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 49 0.65
28 18 0.24
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:81126748 original size:54 final size:54
Alignment explanation
Indices: 81126642--81126753 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
81126632 AGGAAGCGTC
* *
81126642 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * *
81126696 CTGGTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
81126750 CTGG
1 CTGG
81126754 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:81129809 original size:30 final size:30
Alignment explanation
Indices: 81129773--81129833 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
81129763 CTTGAAAAGG
*
81129773 AAAGAATTTTTAGAGCTGAAGCAAGGCCAT
1 AAAGAATTTTTAGAGCTAAAGCAAGGCCAT
81129803 AAAGAATTTTTAGAGCTAAAGCAAGGCCAT
1 AAAGAATTTTTAGAGCTAAAGCAAGGCCAT
81129833 A
1 A
81129834 GGATGGTGAC
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (30 bp):
AAAGAATTTTTAGAGCTAAAGCAAGGCCAT
Found at i:81131505 original size:53 final size:53
Alignment explanation
Indices: 81131342--81131529 Score: 151
Period size: 53 Copynumber: 3.5 Consensus size: 53
81131332 GTTAAATTTG
* * * * * * * * *
81131342 ATGCCAAGGCATGACATTGGTAAGTTTTACAAGGTAAGGAAATCATGTAAGACC
1 ATGCCAAGACATGACAATGGTAAG-TTCATAAGGCAAAGATACCACGTAAGACC
* * * * * * * *
81131396 ATGTCAAGACATGGCATTGATAAACTACGATAAGGCAAAGATCCCATGTAAGACC
1 ATGCCAAGACATGACAATGGT-AAGTTC-ATAAGGCAAAGATACCACGTAAGACC
* * * *
81131451 ATGCCAAGGCATGGCAATGGTGAGTTCATAAGGCAAGGATACCACGTAAGACC
1 ATGCCAAGACATGACAATGGTAAGTTCATAAGGCAAAGATACCACGTAAGACC
*
81131504 ATGTCAAGACATGACAATGGTAAGTT
1 ATGCCAAGACATGACAATGGTAAGTT
81131530 TAAAAAGGAA
Statistics
Matches: 105, Mismatches: 27, Indels: 5
0.77 0.20 0.04
Matches are distributed among these distances:
53 45 0.43
54 21 0.20
55 39 0.37
ACGTcount: A:0.37, C:0.18, G:0.24, T:0.21
Consensus pattern (53 bp):
ATGCCAAGACATGACAATGGTAAGTTCATAAGGCAAAGATACCACGTAAGACC
Found at i:81135709 original size:38 final size:38
Alignment explanation
Indices: 81135647--81135886 Score: 300
Period size: 38 Copynumber: 6.3 Consensus size: 38
81135637 ATATTCGATG
* * * *
81135647 TATATCAGGATTAAATCCCCCAGGCTTCGTGCTGGTAA
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * *
81135685 AATATTCGAGTTAAATCCCGCAGGCTTCGTGCTGGCAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
81135723 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* *
81135761 TATATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAA
1 TATATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAT
* *
81135801 AATATCCGGGTTAAATCCCGCAGGCTTCCTGCTGGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
* * * * *
81135839 TATATCCAGGATAAATCCCGCAGGCCTAGTGCTAGTAT
1 TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
*
81135877 TATATTCGGG
1 TATATCCGGG
81135887 CCTTTGTGCC
Statistics
Matches: 173, Mismatches: 27, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
38 133 0.77
39 10 0.06
40 30 0.17
ACGTcount: A:0.23, C:0.24, G:0.24, T:0.29
Consensus pattern (38 bp):
TATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAT
Found at i:81135808 original size:78 final size:76
Alignment explanation
Indices: 81135648--81135863 Score: 272
Period size: 78 Copynumber: 2.8 Consensus size: 76
81135638 TATTCGATGT
* * * ** * *
81135648 ATATCAGGATTAAATCCCCCAGGCTTCGTGCTGGTAAAATATTCGAGTTAAATCCCGCAGGCTTC
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAAACCCGCAGGCTTC
**
81135713 GTGCTGGCATT
66 GTGCTGGCAAA
*
81135724 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACCCGCAGGCT
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGAG-TTAAA-ACCCGCAGGCT
*
81135789 TCGTGCTGGTAAA
64 TCGTGCTGGCAAA
* * *
81135802 ATATCCGGGTTAAATCCCGCAGGCTTCCTGCTGGTATTATATCC-AGGATAAATCCCGCAGGC
1 ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGA-GTTAAAACCCGCAGGC
81135864 CTAGTGCTAG
Statistics
Matches: 122, Mismatches: 15, Indels: 6
0.85 0.10 0.04
Matches are distributed among these distances:
76 49 0.40
77 9 0.07
78 64 0.52
ACGTcount: A:0.24, C:0.25, G:0.24, T:0.27
Consensus pattern (76 bp):
ATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGAGTTAAAACCCGCAGGCTTC
GTGCTGGCAAA
Found at i:81135871 original size:116 final size:116
Alignment explanation
Indices: 81135667--81135887 Score: 352
Period size: 116 Copynumber: 1.9 Consensus size: 116
81135657 TTAAATCCCC
* * *
81135667 CAGGCTTCGTGCTGGTAAAATATTCGAGTTAAATCCCGCAGGCTTCGTGCTGGCATTATATCCGG
1 CAGGCTTCGTGCTGGTAAAATATCCGAGTTAAATCCCGCAGGCTTCCTGCTGGCATTATATCCAG
* * * *
81135732 GTTAAATCCCGCAGGCTTCGTGCTGGTATTATATCCGGGCTTAAAGACCCG
66 GATAAATCCCGCAGGCCTAGTGCTAGTATTATATCCGGGCTTAAAGACCCG
* *
81135783 CAGGCTTCGTGCTGGTAAAATATCCGGGTTAAATCCCGCAGGCTTCCTGCTGGTATTATATCCAG
1 CAGGCTTCGTGCTGGTAAAATATCCGAGTTAAATCCCGCAGGCTTCCTGCTGGCATTATATCCAG
*
81135848 GATAAATCCCGCAGGCCTAGTGCTAGTATTATATTCGGGC
66 GATAAATCCCGCAGGCCTAGTGCTAGTATTATATCCGGGC
81135888 CTTTGTGCCT
Statistics
Matches: 95, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
116 95 1.00
ACGTcount: A:0.22, C:0.24, G:0.25, T:0.29
Consensus pattern (116 bp):
CAGGCTTCGTGCTGGTAAAATATCCGAGTTAAATCCCGCAGGCTTCCTGCTGGCATTATATCCAG
GATAAATCCCGCAGGCCTAGTGCTAGTATTATATCCGGGCTTAAAGACCCG
Found at i:81135956 original size:43 final size:43
Alignment explanation
Indices: 81135879--81135960 Score: 128
Period size: 43 Copynumber: 1.9 Consensus size: 43
81135869 GCTAGTATTA
* * **
81135879 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTG
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
81135922 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
1 TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGA
81135961 AATGATATGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 35 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.29
Consensus pattern (43 bp):
TATTCGGGCCTTCGTGCCTAGCAGGCGTAATGCCGGTGATGTG
Found at i:81140586 original size:46 final size:46
Alignment explanation
Indices: 81140469--81140928 Score: 180
Period size: 48 Copynumber: 9.7 Consensus size: 46
81140459 TTTGTGTGCT
* * * *
81140469 AGTGTAAGACATGTCTGGGACATGGCATCGGCATTGAAACG-AGAGCT
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCTTGAGATGTA-AGCC
* * ** *
81140516 AGTGTAATACATGTCTAGTTCAT-GCATCAGCCTCGAGATGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGGCATC-GCCTTGAGATGTAAGCC
* *
81140562 AGTGTAAGACATGTCTGGGACAT-GCATCGGCTATGAGATGT--GTC
1 AGTGTAAGACATGTCTGGGACATGGCATCGCCT-TGAGATGTAAGCC
* *
81140606 AGTGTAAGACCATGTCTGGGACATGGCATCGACACATAT-AGAGGT-A-TC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG-C-C-T-TGAGATGTAAGCC
* * * * * * *
81140654 AATGTAAGATCAGGTCTGAGACATGGTATCGGCAC-GGATATGTGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATC-GC-CTTGAGATGT--AAGCC
* *
81140704 AGTGTAAGACCATGTCTGGGACATGGCATCGACACATAT-AGAGGT-A-TC
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG-C-C-T-TGAGATGTAAGCC
* * * * * * *
81140752 AATGTAAGATCAGGTCTGAGACATGGTATCGGCAC-GGATATGTGAAAGCT
1 AGTGTAAGA-CATGTCTGGGACATGGCATC-GC-CTTGAGATGT--AAGCC
* * * * *
81140802 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCCTCGA-TTTTGATAGTC
1 AGTGTAAGA-CATGTCTGGGACATGGCATC-GCCTTGAGATGT-A-AGCC
*
81140851 AGTGTAAGAACATGGT-TGGGACATGGCATCGACTTGATAGATG--AGCC
1 AGTGTAAG-ACAT-GTCTGGGACATGGCATCGCCTTG--AGATGTAAGCC
*
81140898 AGTGTAAGACCATGTCTAGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACATGGCATCG
81140929 GCATTATTCC
Statistics
Matches: 311, Mismatches: 69, Indels: 66
0.70 0.15 0.15
Matches are distributed among these distances:
44 11 0.04
45 17 0.05
46 63 0.20
47 48 0.15
48 69 0.22
49 38 0.12
50 60 0.19
51 1 0.00
52 4 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGGCATCGCCTTGAGATGTAAGCC
Found at i:81140677 original size:48 final size:48
Alignment explanation
Indices: 81140608--81140782 Score: 190
Period size: 48 Copynumber: 3.6 Consensus size: 48
81140598 GATGTGTCAG
* *
81140608 TGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTATCAA
1 TGTAAGACCAGGTCTGAGACATGGCATCGACACATATAGAGGTATCAA
* * * * ** * *
81140656 TGTAAGATCAGGTCTGAGACATGGTATCGGCACGGATAT-GTGAAAGCTAG
1 TGTAAGACCAGGTCTGAGACATGGCATCGACAC--ATATAGAGGTATC-AA
* *
81140706 TGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTATCAA
1 TGTAAGACCAGGTCTGAGACATGGCATCGACACATATAGAGGTATCAA
* *
81140754 TGTAAGATCAGGTCTGAGACATGGTATCG
1 TGTAAGACCAGGTCTGAGACATGGCATCG
81140783 GCACGGATAT
Statistics
Matches: 99, Mismatches: 24, Indels: 8
0.76 0.18 0.06
Matches are distributed among these distances:
48 58 0.59
49 8 0.08
50 33 0.33
ACGTcount: A:0.31, C:0.17, G:0.28, T:0.24
Consensus pattern (48 bp):
TGTAAGACCAGGTCTGAGACATGGCATCGACACATATAGAGGTATCAA
Found at i:81140715 original size:98 final size:98
Alignment explanation
Indices: 81140606--81140828 Score: 446
Period size: 98 Copynumber: 2.3 Consensus size: 98
81140596 GAGATGTGTC
81140606 AGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTATCAATGTAAGATCAGGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTATCAATGTAAGATCAGGTCT
81140671 GAGACATGGTATCGGCACGGATATGTGAAAGCT
66 GAGACATGGTATCGGCACGGATATGTGAAAGCT
81140704 AGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTATCAATGTAAGATCAGGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTATCAATGTAAGATCAGGTCT
81140769 GAGACATGGTATCGGCACGGATATGTGAAAGCT
66 GAGACATGGTATCGGCACGGATATGTGAAAGCT
81140802 AGTGTAAGACCATGTCTGGGACATGGC
1 AGTGTAAGACCATGTCTGGGACATGGC
81140829 GTCAGCCTCG
Statistics
Matches: 125, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
98 125 1.00
ACGTcount: A:0.31, C:0.17, G:0.29, T:0.23
Consensus pattern (98 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGACACATATAGAGGTATCAATGTAAGATCAGGTCT
GAGACATGGTATCGGCACGGATATGTGAAAGCT
Found at i:81140721 original size:50 final size:50
Alignment explanation
Indices: 81140656--81140827 Score: 197
Period size: 50 Copynumber: 3.5 Consensus size: 50
81140646 GAGGTATCAA
*
81140656 TGTAAGATCAGGTCTGAGACATGGTATCGGCACGGATATGTGAAAGCTAG
1 TGTAAGACCAGGTCTGAGACATGGTATCGGCACGGATATGTGAAAGCTAG
* * * * * ** * *
81140706 TGTAAGACCATGTCTGGGACATGGCATCGACAC--ATATAGAGGTATC-AA
1 TGTAAGACCAGGTCTGAGACATGGTATCGGCACGGATAT-GTGAAAGCTAG
*
81140754 TGTAAGATCAGGTCTGAGACATGGTATCGGCACGGATATGTGAAAGCTAG
1 TGTAAGACCAGGTCTGAGACATGGTATCGGCACGGATATGTGAAAGCTAG
* *
81140804 TGTAAGACCATGTCTGGGACATGG
1 TGTAAGACCAGGTCTGAGACATGG
81140828 CGTCAGCCTC
Statistics
Matches: 95, Mismatches: 23, Indels: 8
0.75 0.18 0.06
Matches are distributed among these distances:
48 33 0.35
49 8 0.08
50 54 0.57
ACGTcount: A:0.30, C:0.16, G:0.30, T:0.24
Consensus pattern (50 bp):
TGTAAGACCAGGTCTGAGACATGGTATCGGCACGGATATGTGAAAGCTAG
Found at i:81158628 original size:28 final size:28
Alignment explanation
Indices: 81158567--81158774 Score: 285
Period size: 28 Copynumber: 7.4 Consensus size: 28
81158557 ATTAAGTCCA
* * *
81158567 CACACTCAGTGCTATATAAT-TAACTCG
1 CACACTTAGTGCTACATAATCAAACTCG
*
81158594 CACACTTAGTGCTATATAATCAAACTCG
1 CACACTTAGTGCTACATAATCAAACTCG
*
81158622 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATCAAACTCG
*
81158650 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATCAAACTCG
*
81158678 CACACTTAGTGCTACATAGTCAAACTCG
1 CACACTTAGTGCTACATAATCAAACTCG
*
81158706 CACACTTAGTGCTACATAATCAAGCTCG
1 CACACTTAGTGCTACATAATCAAACTCG
* * *
81158734 CACACTTAGTGCTGTACA-ATTTAAACCCG
1 CACACTTAGTGC--TACATAATCAAACTCG
81158763 CACACTTAGTGC
1 CACACTTAGTGC
81158775 CAATCTCATG
Statistics
Matches: 168, Mismatches: 10, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
27 19 0.11
28 126 0.75
29 19 0.11
30 4 0.02
ACGTcount: A:0.32, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CACACTTAGTGCTACATAATCAAACTCG
Found at i:81165639 original size:25 final size:25
Alignment explanation
Indices: 81165611--81165659 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
81165601 TACAGTCTAT
*
81165611 CTATAGTAGTCTCAGCATATACTAC
1 CTATAGCAGTCTCAGCATATACTAC
* * *
81165636 CTATAGCAGTTTTAGGATATACTA
1 CTATAGCAGTCTCAGCATATACTA
81165660 TCAAAAACAG
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.18, G:0.14, T:0.35
Consensus pattern (25 bp):
CTATAGCAGTCTCAGCATATACTAC
Found at i:81166411 original size:38 final size:39
Alignment explanation
Indices: 81166369--81166446 Score: 95
Period size: 40 Copynumber: 2.0 Consensus size: 39
81166359 AAACCCTTTT
* * * *
81166369 CAGTACAGTATCGAT-TTTAGTTTGGCCTTAGCCCATCA
1 CAGTACAGAATCAATATGTAGTTGGGCCTTAGCCCATCA
*
81166407 CAGTACAGAATTAATCATGTAGTTGGGCCTTAGCCCATCA
1 CAGTACAGAATCAAT-ATGTAGTTGGGCCTTAGCCCATCA
81166447 ACGTATCAGT
Statistics
Matches: 33, Mismatches: 5, Indels: 2
0.82 0.12 0.05
Matches are distributed among these distances:
38 12 0.36
40 21 0.64
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.31
Consensus pattern (39 bp):
CAGTACAGAATCAATATGTAGTTGGGCCTTAGCCCATCA
Found at i:81169478 original size:16 final size:16
Alignment explanation
Indices: 81169459--81169493 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
81169449 AATAATGAGT
81169459 AAAT-AAAATAACAATG
1 AAATAAAAATAA-AATG
81169475 AAATAAAAATAAAATG
1 AAATAAAAATAAAATG
81169491 AAA
1 AAA
81169494 ACAACTAGCA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 11 0.61
17 7 0.39
ACGTcount: A:0.74, C:0.03, G:0.06, T:0.17
Consensus pattern (16 bp):
AAATAAAAATAAAATG
Found at i:81174980 original size:21 final size:17
Alignment explanation
Indices: 81174941--81174999 Score: 63
Period size: 17 Copynumber: 3.6 Consensus size: 17
81174931 TAAGGTTCCA
81174941 TAGCTATTAGACACCTT
1 TAGCTATTAGACACCTT
81174958 TAGCTATTAGA-ACAC--
1 TAGCTATTAGACAC-CTT
* *
81174973 -AACTTTTAGACACCTT
1 TAGCTATTAGACACCTT
81174989 TAGCTATTAGA
1 TAGCTATTAGA
81175000 ACACAACTTT
Statistics
Matches: 33, Mismatches: 4, Indels: 10
0.70 0.09 0.21
Matches are distributed among these distances:
14 9 0.27
15 2 0.06
16 2 0.06
17 20 0.61
ACGTcount: A:0.34, C:0.20, G:0.12, T:0.34
Consensus pattern (17 bp):
TAGCTATTAGACACCTT
Found at i:81174982 original size:31 final size:31
Alignment explanation
Indices: 81174947--81175011 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
81174937 TCCATAGCTA
81174947 TTAGACACCTTTAGCTATTAGAACACAACTT
1 TTAGACACCTTTAGCTATTAGAACACAACTT
81174978 TTAGACACCTTTAGCTATTAGAACACAACTT
1 TTAGACACCTTTAGCTATTAGAACACAACTT
81175009 TTA
1 TTA
81175012 CACTTTACAC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.35, C:0.22, G:0.09, T:0.34
Consensus pattern (31 bp):
TTAGACACCTTTAGCTATTAGAACACAACTT
Found at i:81183164 original size:29 final size:29
Alignment explanation
Indices: 81183122--81183180 Score: 109
Period size: 29 Copynumber: 2.0 Consensus size: 29
81183112 GTAAAACTCC
81183122 TAATTATTTTTGTACGATTTTTGGTGAAT
1 TAATTATTTTTGTACGATTTTTGGTGAAT
*
81183151 TAATTATTTTTGTACGATTTTTTGTGAAT
1 TAATTATTTTTGTACGATTTTTGGTGAAT
81183180 T
1 T
81183181 TTAAAATTCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.24, C:0.03, G:0.15, T:0.58
Consensus pattern (29 bp):
TAATTATTTTTGTACGATTTTTGGTGAAT
Found at i:81189814 original size:34 final size:34
Alignment explanation
Indices: 81189765--81189846 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
81189755 GAAGAATAAG
* * *
81189765 AGAAAAAGAAGAAGAAGAGAAGAAATA-GAGAAGA
1 AGAAAAAGAAAAAGAAAAGAA-AAAGAGGAGAAGA
*
81189799 AGAAGAAGAAAAAGAAAAGAAAAAGAGGAGAAGA
1 AGAAAAAGAAAAAGAAAAGAAAAAGAGGAGAAGA
*
81189833 AGAATAAGAGAAAA
1 AGAAAAAGA-AAAA
81189847 TGGAAAGAGC
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
33 4 0.10
34 33 0.80
35 4 0.10
ACGTcount: A:0.70, C:0.00, G:0.28, T:0.02
Consensus pattern (34 bp):
AGAAAAAGAAAAAGAAAAGAAAAAGAGGAGAAGA
Found at i:81189836 original size:6 final size:6
Alignment explanation
Indices: 81189754--81189841 Score: 71
Period size: 6 Copynumber: 15.5 Consensus size: 6
81189744 CTTGGACGGT
* *
81189754 AGAAGA ATAAG- AGAAAA AGAAGA AGAAG- AGAAGA A-ATAG- AGAAGA
1 AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGA-AGA AGAAGA
* * * *
81189799 AGAAGA AGAAAA AGAA-A AGAAAA AG-AGG AGAAGA AGAATA AGA
1 AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGAAGA AGA
81189842 GAAAATGGAA
Statistics
Matches: 66, Mismatches: 9, Indels: 14
0.74 0.10 0.16
Matches are distributed among these distances:
5 20 0.30
6 46 0.70
ACGTcount: A:0.68, C:0.00, G:0.28, T:0.03
Consensus pattern (6 bp):
AGAAGA
Found at i:81189841 original size:28 final size:28
Alignment explanation
Indices: 81189756--81189846 Score: 92
Period size: 31 Copynumber: 3.1 Consensus size: 28
81189746 TGGACGGTAG
* * * *
81189756 AAGAATAAGAGAAAAAGAAGAAGAAGAG
1 AAGAAAAAGAGAAGAAGAAGAAAAAGAA
81189784 AAGAAATAGAGAAGAAGAAGAAGAAAAAGAA
1 AAGAAA-A-AG-AGAAGAAGAAGAAAAAGAA
*
81189815 AAGAAAAAGAGGAGAAGAAGAATAAGAGAA
1 AAGAAAAAGAGAAGAAGAAGAA-AA-AGAA
81189845 AA
1 AA
81189847 TGGAAAGAGC
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
28 17 0.32
29 5 0.09
30 9 0.17
31 22 0.42
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.03
Consensus pattern (28 bp):
AAGAAAAAGAGAAGAAGAAGAAAAAGAA
Found at i:81189844 original size:11 final size:10
Alignment explanation
Indices: 81189765--81189835 Score: 56
Period size: 11 Copynumber: 6.8 Consensus size: 10
81189755 GAAGAATAAG
81189765 AGAAAA-AGA
1 AGAAAAGAGA
81189774 AGAAGAAGAGA
1 AGAA-AAGAGA
81189785 AGAAATAGAGA
1 AGAAA-AGAGA
*
81189796 AGAAGA-AGA
1 AGAAAAGAGA
*
81189805 AGAAAAAGAAA
1 AG-AAAAGAGA
*
81189816 AGAAAAAGAGG
1 AG-AAAAGAGA
81189827 AGAAGAAGA
1 AGAA-AAGA
81189836 ATAAGAGAAA
Statistics
Matches: 51, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
9 9 0.18
10 9 0.18
11 33 0.65
ACGTcount: A:0.69, C:0.00, G:0.30, T:0.01
Consensus pattern (10 bp):
AGAAAAGAGA
Found at i:81193521 original size:34 final size:34
Alignment explanation
Indices: 81193478--81193555 Score: 86
Period size: 34 Copynumber: 2.3 Consensus size: 34
81193468 CATATGAAAA
* *
81193478 AACAATTCAT-GCATAATAACAGTTCGCTCAATAT
1 AACAATTCATAGAAT-ATAACAGTTCACTCAATAT
* * *
81193512 AACAGTTCATAGAATATAACATTTCATTCAATAT
1 AACAATTCATAGAATATAACAGTTCACTCAATAT
*
81193546 AATAATTCAT
1 AACAATTCAT
81193556 TCATACCACA
Statistics
Matches: 36, Mismatches: 7, Indels: 2
0.80 0.16 0.04
Matches are distributed among these distances:
34 33 0.92
35 3 0.08
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (34 bp):
AACAATTCATAGAATATAACAGTTCACTCAATAT
Found at i:81193544 original size:17 final size:17
Alignment explanation
Indices: 81193478--81193558 Score: 65
Period size: 17 Copynumber: 4.8 Consensus size: 17
81193468 CATATGAAAA
*
81193478 AACAATTCATGC-ATAAT
1 AACAATTCATTCAAT-AT
* **
81193495 AACAGTTCGCTCAATAT
1 AACAATTCATTCAATAT
* **
81193512 AACAGTTCATAGAATAT
1 AACAATTCATTCAATAT
*
81193529 AACATTTCATTCAATAT
1 AACAATTCATTCAATAT
*
81193546 AATAATTCATTCA
1 AACAATTCATTCA
81193559 TACCACATCG
Statistics
Matches: 50, Mismatches: 13, Indels: 2
0.77 0.20 0.03
Matches are distributed among these distances:
17 48 0.96
18 2 0.04
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.33
Consensus pattern (17 bp):
AACAATTCATTCAATAT
Found at i:81194617 original size:31 final size:31
Alignment explanation
Indices: 81194558--81194633 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
81194548 CTTCAAGCGC
*** *
81194558 ATATATATTATATATTTTATGACCCATAAAT
1 ATATATATTATATATAACAAGACCCATAAAT
*
81194589 ATATATATTATATATAACAAGACGCATAAAT
1 ATATATATTATATATAACAAGACCCATAAAT
81194620 ATAT-TATT-TATATA
1 ATATATATTATATATA
81194634 CATATCTATT
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
29 6 0.15
30 4 0.10
31 30 0.75
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (31 bp):
ATATATATTATATATAACAAGACCCATAAAT
Found at i:81202118 original size:30 final size:30
Alignment explanation
Indices: 81202061--81202118 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
81202051 TATAATTTCA
* *
81202061 TTTTATTTTTATTTTAATTTGGCCCTAACC
1 TTTTATTTTTATTTCAATTTAGCCCTAACC
* *
81202091 TTTTATTTTTGTTTCAATTTAGTCCTAA
1 TTTTATTTTTATTTCAATTTAGCCCTAA
81202119 TGGCTATTAT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.21, C:0.14, G:0.07, T:0.59
Consensus pattern (30 bp):
TTTTATTTTTATTTCAATTTAGCCCTAACC
Found at i:81202425 original size:12 final size:12
Alignment explanation
Indices: 81202366--81202530 Score: 100
Period size: 12 Copynumber: 14.1 Consensus size: 12
81202356 TTTTAAAAAA
81202366 ATTATTATATAT
1 ATTATTATATAT
* *
81202378 ATTTTTATTTATGT
1 ATTATTA--TATAT
*
81202392 ATTATT-TGTTAT
1 ATTATTAT-ATAT
81202404 ATTATT-TATAT
1 ATTATTATATAT
81202415 ATTATTATATAT
1 ATTATTATATAT
*
81202427 TTTATT-TATAT
1 ATTATTATATAT
81202438 ATT-TTAT-TAT
1 ATTATTATATAT
*
81202448 A-TATTAAATCAT
1 ATTATTATAT-AT
*
81202460 TTTATTATATAT
1 ATTATTATATAT
81202472 ATTATTCAT-T-T
1 ATTATT-ATATAT
* *
81202483 CTTATTTTAT-T
1 ATTATTATATAT
*
81202494 ATATATTATGTTAT
1 AT-TATTAT-ATAT
*
81202508 CTTATTAT-T-T
1 ATTATTATATAT
81202518 ATTATTATATAT
1 ATTATTATATAT
81202530 A
1 A
81202531 ATTTTAAAAT
Statistics
Matches: 118, Mismatches: 19, Indels: 32
0.70 0.11 0.19
Matches are distributed among these distances:
9 1 0.01
10 18 0.15
11 30 0.25
12 42 0.36
13 16 0.14
14 11 0.09
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (12 bp):
ATTATTATATAT
Found at i:81202432 original size:35 final size:36
Alignment explanation
Indices: 81202401--81202477 Score: 85
Period size: 32 Copynumber: 2.2 Consensus size: 36
81202391 TATTATTTGT
81202401 TATATTATTT-ATATATTATTATATATTTTATT-TA
1 TATATTATTTGATATATTATTATATATTTTATTATA
*
81202435 TATA-T-TTT-AT-TATATATTAAATCATTTTATTATA
1 TATATTATTTGATATAT-TATTATAT-ATTTTATTATA
81202469 TATATTATT
1 TATATTATT
81202478 CATTTCTTAT
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
31 3 0.08
32 12 0.32
33 9 0.24
34 10 0.27
35 1 0.03
36 2 0.05
ACGTcount: A:0.36, C:0.01, G:0.00, T:0.62
Consensus pattern (36 bp):
TATATTATTTGATATATTATTATATATTTTATTATA
Found at i:81202448 original size:23 final size:25
Alignment explanation
Indices: 81202366--81202589 Score: 106
Period size: 23 Copynumber: 8.6 Consensus size: 25
81202356 TTTTAAAAAA
*
81202366 ATTATTATATATATTTTTATTTATGT
1 ATTATTATATATA-TTTTATTTATAT
* *
81202392 ATTATT-TGT-TATATTATTTATAT
1 ATTATTATATATATTTTATTTATAT
81202415 ATTA-T-TATATATTTTATTTATAT
1 ATTATTATATATATTTTATTTATAT
* *
81202438 ATT-TTAT-TATATATTA--AATCAT
1 ATTATTATATATATTTTATTTAT-AT
* *
81202460 TTTATTATATATATTATTCATTTCTTAT
1 ATTATTATATATATT-TT-ATTT-ATAT
* *
81202488 TTTATTATATATTATGTTATCTTATTATTT
1 ATTATTATATA-TATTTTAT-TTA-TA--T
* *
81202518 ATTATTATATATAATTTTAAAATTTACAA
1 ATTATTATATAT-ATTTT---ATTTATAT
*
81202547 ATTATTATTAAATATTGTT-TTTATAT
1 ATTATTA-TATATATT-TTATTTATAT
* *
81202573 ATCATTATTAAATATTT
1 ATTATTA-TATATATTT
81202590 AGTATGAAAT
Statistics
Matches: 155, Mismatches: 21, Indels: 45
0.70 0.10 0.20
Matches are distributed among these distances:
21 2 0.01
22 7 0.05
23 43 0.28
24 8 0.05
25 5 0.03
26 27 0.17
27 2 0.01
28 19 0.12
29 15 0.10
30 21 0.14
31 1 0.01
32 3 0.02
33 2 0.01
ACGTcount: A:0.35, C:0.03, G:0.02, T:0.61
Consensus pattern (25 bp):
ATTATTATATATATTTTATTTATAT
Found at i:81202513 original size:48 final size:45
Alignment explanation
Indices: 81202367--81202536 Score: 145
Period size: 46 Copynumber: 3.7 Consensus size: 45
81202357 TTTAAAAAAA
*
81202367 TTATTATATATATTTTTATTTATGTATTATT-TGT-TATATTATTTAT
1 TTATTATATATA-TTTTATTTATATATT-TTAT-TATATATTATTTAT
* * *
81202413 ATATTATTATATATTTTATTTATATATTTTATTATATATTAAATCATT
1 TTATTA-TATATATTTTATTTATATATTTTATTATATATT-ATTTA-T
*
81202461 TTATTATATATATTATTCATTTCT-TATTTTATTATATATTATGTTAT
1 TTATTATATATATT-TT-ATTTATATATTTTATTATATATTAT-TTAT
*
81202508 CTTATTAT-T-TATTATTATATATA-ATTTTA
1 -TTATTATATATATT-TTATTTATATATTTTA
81202537 AAATTTACAA
Statistics
Matches: 104, Mismatches: 10, Indels: 21
0.77 0.07 0.16
Matches are distributed among these distances:
45 13 0.12
46 33 0.32
47 20 0.19
48 33 0.32
49 5 0.05
ACGTcount: A:0.32, C:0.02, G:0.02, T:0.64
Consensus pattern (45 bp):
TTATTATATATATTTTATTTATATATTTTATTATATATTATTTAT
Found at i:81202514 original size:20 final size:20
Alignment explanation
Indices: 81202484--81202522 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
81202474 TATTCATTTC
*
81202484 TTATTTTATTATATATTATG
1 TTATCTTATTATATATTATG
*
81202504 TTATCTTATTATTTATTAT
1 TTATCTTATTATATATTAT
81202523 TATATATAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.28, C:0.03, G:0.03, T:0.67
Consensus pattern (20 bp):
TTATCTTATTATATATTATG
Found at i:81216994 original size:90 final size:90
Alignment explanation
Indices: 81216842--81217622 Score: 1057
Period size: 90 Copynumber: 8.7 Consensus size: 90
81216832 GTAGATCACT
* * *
81216842 GAAGCAGATCGAAGATGATAGATTTGGTGTCTCTGTATTGGACGGGGAGCAGATCGAAGATAGCA
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCA
* *
81216907 GATCTAACATTCGTGTGTTTACATT
66 GATCTGACATTCGTGTGTTTACATC
* * * *
81216932 GAAGCAGATCAAAAATGATAGATTTGGCATCTTTGTATTAGACGAGGAGCAGATCGAAGATAGCA
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCA
* *
81216997 GATCTGACATTTGTATGTTTACATC
66 GATCTGACATTCGTGTGTTTACATC
* * *
81217022 GAAGTAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGAC-AGGGAGCAGATCGAAGATAGC
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGA-GGAGCAGATCGAAGATAGC
* * * *
81217086 AGATTTGACATCCGTGTATTTACATT
65 AGATCTGACATTCGTGTGTTTACATC
* * * * *
81217112 GAAGCAAATCGAAGATGATAGATTTGACGTCTCTGTATTAGACGGGGAGCAGAACAAAGATAGCA
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCA
81217177 GATCTGACATTCGTGTGTTTACATC
66 GATCTGACATTCGTGTGTTTACATC
* * * *
81217202 GAAGCAAATCGAAGATGATAGATTTGGTGTCTCTGTATTGGACGGGGAGCAGATCGAAGATAGCA
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCA
*
81217267 GATCTGACATTCATGTGTTTACATC
66 GATCTGACATTCGTGTGTTTACATC
* * * *
81217292 GAAGCAGATCGAAGATGACAGATTTGGCATCTCTGTATTAGACG-GAGAGCAGATCGAAAATACC
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAG-GAGCAGATCGAAGATAGC
*
81217356 AGATCTGACATTTGTGTGTTTACATC
65 AGATCTGACATTCGTGTGTTTACATC
* * * * *
81217382 GAAGCAGATTGAAGATGACAGGTTTGGCGTCTCTATATTAGACGAGGAGCAGATCAAAGATAGCA
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCA
*
81217447 GGTCTGACATTCGTGTGTTTACATC
66 GATCTGACATTCGTGTGTTTACATC
* * * *
81217472 GAAGCAGATTGAAGATGATAGATTTGGCGTCTTTGTATTAGAC-AGGGGCAGATCGAAGATAGGA
1 GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCA
*
81217536 GATCTGACATTTGTGTGTTTACATC
66 GATCTGACATTCGTGTGTTTACATC
** * * * *
81217561 GAAGCAGATCGAAGAT-AGCGGATTTGGCGTCTCTGTATTTGACGGGGAGCAGCTCAAAGATA
1 GAAGCAGATCGAAGATGA-TAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATA
81217623 TTAACATGGT
Statistics
Matches: 609, Mismatches: 76, Indels: 12
0.87 0.11 0.02
Matches are distributed among these distances:
88 1 0.00
89 79 0.13
90 528 0.87
91 1 0.00
ACGTcount: A:0.31, C:0.14, G:0.27, T:0.27
Consensus pattern (90 bp):
GAAGCAGATCGAAGATGATAGATTTGGCGTCTCTGTATTAGACGAGGAGCAGATCGAAGATAGCA
GATCTGACATTCGTGTGTTTACATC
Found at i:81219095 original size:25 final size:27
Alignment explanation
Indices: 81219049--81219099 Score: 70
Period size: 27 Copynumber: 2.0 Consensus size: 27
81219039 AATCCTTTTT
* *
81219049 AAATTTTTTATATAATTTATTTATTTA
1 AAATGTTTTATATAATTCATTTATTTA
81219076 AAATGTTTTATAT-A-TCATTTATTT
1 AAATGTTTTATATAATTCATTTATTT
81219100 TTATTATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.41
26 1 0.05
27 12 0.55
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.61
Consensus pattern (27 bp):
AAATGTTTTATATAATTCATTTATTTA
Found at i:81219102 original size:27 final size:26
Alignment explanation
Indices: 81219044--81219101 Score: 73
Period size: 29 Copynumber: 2.2 Consensus size: 26
81219034 ATTTTAATCC
81219044 TTTTT-AAATTTTTTATATAATTTAT
1 TTTTTAAAATTTTTTATATAATTTAT
*
81219069 TTATTTAAAATGTTTTATATATCATTTAT
1 TT-TTTAAAAT-TTTT-TATATAATTTAT
81219098 TTTT
1 TTTT
81219102 ATTATAAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
25 2 0.07
26 3 0.11
27 4 0.14
28 6 0.21
29 13 0.46
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTTTAAAATTTTTTATATAATTTAT
Found at i:81219197 original size:23 final size:25
Alignment explanation
Indices: 81219132--81219202 Score: 78
Period size: 23 Copynumber: 2.9 Consensus size: 25
81219122 ATTTAAAAAA
81219132 ATTATTATATATATTTTTATT-TATGT
1 ATTATT-TATATA-TTTTATTATATGT
* *
81219158 ATTATTTGT-TATATTATTATAT-T
1 ATTATTTATATATTTTATTATATGT
81219181 -TTATTTATATATTTTATTATAT
1 ATTATTTATATATTTTATTATAT
81219203 ATTAAATCAT
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
22 7 0.18
23 19 0.49
24 5 0.13
25 2 0.05
26 6 0.15
ACGTcount: A:0.31, C:0.00, G:0.03, T:0.66
Consensus pattern (25 bp):
ATTATTTATATATTTTATTATATGT
Found at i:81219197 original size:28 final size:29
Alignment explanation
Indices: 81219132--81219282 Score: 77
Period size: 30 Copynumber: 5.1 Consensus size: 29
81219122 ATTTAAAAAA
81219132 ATTATTATA-TA-TAT-TTTTATTTATGTATT
1 ATTATTATATTATTATATTTTATTTA--TA-T
*
81219161 ATTTGTTATATTATTATATTTTATTTATAT
1 A-TTATTATATTATTATATTTTATTTATAT
81219191 ATT-TTATTATATATTAAATCATTTTATTATATAT
1 ATTATTA-TAT-TATT--AT-ATTTTATT-TATAT
*
81219225 ATTATTCAT-TT-CT-TATTTTA-TTATAT
1 ATTATT-ATATTATTATATTTTATTTATAT
* * *
81219251 ATTATGTTATCTTATTAT-TTATAATTATAT
1 ATTA--TTATATTATTATATTTTATTTATAT
81219281 AT
1 AT
81219283 AATTTTAAAA
Statistics
Matches: 100, Mismatches: 4, Indels: 35
0.72 0.03 0.25
Matches are distributed among these distances:
26 9 0.09
27 3 0.03
28 13 0.13
29 12 0.12
30 22 0.22
31 4 0.04
32 6 0.06
33 18 0.18
34 9 0.09
35 3 0.03
36 1 0.01
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (29 bp):
ATTATTATATTATTATATTTTATTTATAT
Found at i:81219202 original size:12 final size:12
Alignment explanation
Indices: 81219133--81219205 Score: 60
Period size: 12 Copynumber: 6.0 Consensus size: 12
81219123 TTTAAAAAAA
81219133 TTATTATATATAT
1 TTATTATATAT-T
*
81219146 TT-TTATTTA-T
1 TTATTATATATT
* * *
81219156 GTATTATTTGTT
1 TTATTATATATT
*
81219168 ATATTATTATATT
1 TTATTA-TATATT
81219181 TTATTTATATATT
1 TTA-TTATATATT
81219194 TTATTATATATT
1 TTATTATATATT
81219206 AAATCATTTT
Statistics
Matches: 49, Mismatches: 7, Indels: 9
0.75 0.11 0.14
Matches are distributed among these distances:
10 2 0.04
11 6 0.12
12 21 0.43
13 17 0.35
14 3 0.06
ACGTcount: A:0.30, C:0.00, G:0.03, T:0.67
Consensus pattern (12 bp):
TTATTATATATT
Found at i:81219205 original size:20 final size:21
Alignment explanation
Indices: 81219166--81219235 Score: 69
Period size: 20 Copynumber: 3.5 Consensus size: 21
81219156 GTATTATTTG
* *
81219166 TTATATTATTATATT-T-TAT
1 TTATATCATTTTATTATATAT
81219185 TTATAT-ATTTTATTATATA-
1 TTATATCATTTTATTATATAT
*
81219204 TTAAATCATTTTATTATATAT
1 TTATATCATTTTATTATATAT
81219225 ATTAT-TCATTT
1 -TTATATCATTT
81219236 CTTATTTTAT
Statistics
Matches: 43, Mismatches: 3, Indels: 8
0.80 0.06 0.15
Matches are distributed among these distances:
18 7 0.16
19 12 0.28
20 15 0.35
21 6 0.14
22 3 0.07
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (21 bp):
TTATATCATTTTATTATATAT
Found at i:81219657 original size:318 final size:318
Alignment explanation
Indices: 81219329--81219934 Score: 1212
Period size: 318 Copynumber: 1.9 Consensus size: 318
81219319 TTTATATATC
81219329 ATTATTAAATATTTAGTATGAAATATTCTAAAATTTACTATAAAATTTTGTTCCTATTTAACATA
1 ATTATTAAATATTTAGTATGAAATATTCTAAAATTTACTATAAAATTTTGTTCCTATTTAACATA
81219394 TTATTATTTTTATAAATATATATTAAGTTATTATATCATATAGTATATTTATATATATTAACCAT
66 TTATTATTTTTATAAATATATATTAAGTTATTATATCATATAGTATATTTATATATATTAACCAT
81219459 TTTCTTAAAAATTCTCCTTTATTATTTATATATTTTTTAAATATTTTATTTAATACATCATTTAT
131 TTTCTTAAAAATTCTCCTTTATTATTTATATATTTTTTAAATATTTTATTTAATACATCATTTAT
81219524 TTTTATTTTTATTTTAGTTTTGTTATCTTTATTTTTTTAACTTATTTATATACGTTCATAATTTG
196 TTTTATTTTTATTTTAGTTTTGTTATCTTTATTTTTTTAACTTATTTATATACGTTCATAATTTG
81219589 TTTATTTGTTTATTTATTTATTTAGTATAATTATATATAATTTTAAAATTTACAAATT
261 TTTATTTGTTTATTTATTTATTTAGTATAATTATATATAATTTTAAAATTTACAAATT
81219647 ATTATTAAATATTTAGTATGAAATATTCTAAAATTTACTATAAAATTTTGTTCCTATTTAACATA
1 ATTATTAAATATTTAGTATGAAATATTCTAAAATTTACTATAAAATTTTGTTCCTATTTAACATA
81219712 TTATTATTTTTATAAATATATATTAAGTTATTATATCATATAGTATATTTATATATATTAACCAT
66 TTATTATTTTTATAAATATATATTAAGTTATTATATCATATAGTATATTTATATATATTAACCAT
81219777 TTTCTTAAAAATTCTCCTTTATTATTTATATATTTTTTAAATATTTTATTTAATACATCATTTAT
131 TTTCTTAAAAATTCTCCTTTATTATTTATATATTTTTTAAATATTTTATTTAATACATCATTTAT
81219842 TTTTATTTTTATTTTAGTTTTGTTATCTTTATTTTTTTAACTTATTTATATACGTTCATAATTTG
196 TTTTATTTTTATTTTAGTTTTGTTATCTTTATTTTTTTAACTTATTTATATACGTTCATAATTTG
81219907 TTTATTTGTTTATTTATTTATTTAGTAT
261 TTTATTTGTTTATTTATTTATTTAGTAT
81219935 TGTTTTAGTA
Statistics
Matches: 288, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
318 288 1.00
ACGTcount: A:0.33, C:0.06, G:0.04, T:0.57
Consensus pattern (318 bp):
ATTATTAAATATTTAGTATGAAATATTCTAAAATTTACTATAAAATTTTGTTCCTATTTAACATA
TTATTATTTTTATAAATATATATTAAGTTATTATATCATATAGTATATTTATATATATTAACCAT
TTTCTTAAAAATTCTCCTTTATTATTTATATATTTTTTAAATATTTTATTTAATACATCATTTAT
TTTTATTTTTATTTTAGTTTTGTTATCTTTATTTTTTTAACTTATTTATATACGTTCATAATTTG
TTTATTTGTTTATTTATTTATTTAGTATAATTATATATAATTTTAAAATTTACAAATT
Found at i:81228119 original size:6 final size:6
Alignment explanation
Indices: 81228109--81228178 Score: 81
Period size: 6 Copynumber: 11.7 Consensus size: 6
81228099 ATTTTTTATT
* *
81228109 TTTTTA GTTTTA -TTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTC
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
*
81228156 TTTTGA -TTTTA TTATTTTA TTTT
1 TTTTTA TTTTTA -T-TTTTA TTTT
81228179 GAAAGACATA
Statistics
Matches: 55, Mismatches: 5, Indels: 8
0.81 0.07 0.12
Matches are distributed among these distances:
5 9 0.16
6 40 0.73
7 1 0.02
8 5 0.09
ACGTcount: A:0.16, C:0.01, G:0.03, T:0.80
Consensus pattern (6 bp):
TTTTTA
Found at i:81231518 original size:43 final size:43
Alignment explanation
Indices: 81231468--81231590 Score: 156
Period size: 43 Copynumber: 2.9 Consensus size: 43
81231458 ATTTCGGTTC
* * *
81231468 ATCCAATGATGCACTGTATGTGCCAGTATATTTTCTTTGATTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* * * *
81231511 CTCCAATGATGTACTATGTGTGCTAGTATATTTTCTTAGGTTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* * *
81231554 ATTCGATGATGCATTATGTGTGCCAGTATATTTTCTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTT
81231591 CGACTTGTCT
Statistics
Matches: 67, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
43 67 1.00
ACGTcount: A:0.22, C:0.15, G:0.18, T:0.46
Consensus pattern (43 bp):
ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
Found at i:81231607 original size:43 final size:43
Alignment explanation
Indices: 81231486--81231661 Score: 140
Period size: 43 Copynumber: 4.1 Consensus size: 43
81231476 ATGCACTGTA
* * ** * *
81231486 TGTGCCAGTATATTTTCTTTGATTTCTCCAATGATGTACTATG
1 TGTGCCAGTATATTTTCTTAGATTTATCTGATGATGCATTATG
* *
81231529 TGTGCTAGTATATTTTCTTAGGTTTAT-TCGATGATGCATTATG
1 TGTGCCAGTATATTTTCTTAGATTTATCT-GATGATGCATTATG
* * * * *
81231572 TGTGCCAGTATATTTTCTTCGACTTGTCTGTTGATGCATTGTG
1 TGTGCCAGTATATTTTCTTAGATTTATCTGATGATGCATTATG
* * * * * *
81231615 TGTGCCAATATAATTACATT-GGTTTATCCGATGATACACTTATG
1 TGTGCCAGTATATTTTC-TTAGATTTATCTGATGATGCA-TTATG
81231659 TGT
1 TGT
81231662 CAATGTGATT
Statistics
Matches: 104, Mismatches: 25, Indels: 7
0.76 0.18 0.05
Matches are distributed among these distances:
43 94 0.90
44 10 0.10
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.45
Consensus pattern (43 bp):
TGTGCCAGTATATTTTCTTAGATTTATCTGATGATGCATTATG
Found at i:81231618 original size:86 final size:87
Alignment explanation
Indices: 81231486--81231661 Score: 194
Period size: 86 Copynumber: 2.0 Consensus size: 87
81231476 ATGCACTGTA
* * * * * * *
81231486 TGTGCCAGTATATTTTCTTTGATTTCTCCAATGATGTACTATGTGTGCTAGTATATTTTC-TTAG
1 TGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTATGTGTGCCAATATAATTACATT-G
* *
81231550 GTTTATTCGATGATGCA-TTATG
65 GTTTATCCGATGATACACTTATG
* *** * *
81231572 TGTGCCAGTATATTTTCTTCGACTTGTCTGTTGATGCATTGTGTGTGCCAATATAATTACATTGG
1 TGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTATGTGTGCCAATATAATTACATTGG
81231637 TTTATCCGATGATACACTTATG
66 TTTATCCGATGATACACTTATG
81231659 TGT
1 TGT
81231662 CAATGTGATT
Statistics
Matches: 73, Mismatches: 15, Indels: 3
0.80 0.16 0.03
Matches are distributed among these distances:
86 63 0.86
87 10 0.14
ACGTcount: A:0.21, C:0.14, G:0.19, T:0.45
Consensus pattern (87 bp):
TGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTATGTGTGCCAATATAATTACATTGG
TTTATCCGATGATACACTTATG
Found at i:81236351 original size:30 final size:30
Alignment explanation
Indices: 81236294--81236351 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
81236284 TTTTTGAACC
**
81236294 TAGGGGAAAAATGGTCATTTTGTCAAAGTT
1 TAGGGGAAAAATGGTCATTTTACCAAAGTT
* * *
81236324 TAGGGGCATAATGGTCGTTTTACCAAAG
1 TAGGGGAAAAATGGTCATTTTACCAAAG
81236352 ATATGAATTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.31, C:0.10, G:0.28, T:0.31
Consensus pattern (30 bp):
TAGGGGAAAAATGGTCATTTTACCAAAGTT
Found at i:81236749 original size:46 final size:47
Alignment explanation
Indices: 81236696--81236955 Score: 225
Period size: 46 Copynumber: 5.5 Consensus size: 47
81236686 GTGTGAGCTA
81236696 GTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTACGAGAGCCT
1 GTGTAAGACCATGTCTGGGACATGCATCGGCCACATTACGAGAGCCT
* * * *
81236742 GTGTAAGACCATGTCTGGGATATGGCATCAG---TATTGAAACGAGTG-CT
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGCCACATT---ACGAGAGCCT
* * * *
81236789 AGTGTAAGA-CATGTCTGGGACATGCATCAGCCTCGA-GACGTA-AG-TT
1 -GTGTAAGACCATGTCTGGGACATGCATCGGCCAC-ATTACG-AGAGCCT
81236835 AGTGTAAGA-CATGTCTGGGACATGCATCGGCCACATTACGAGAGCCT
1 -GTGTAAGACCATGTCTGGGACATGCATCGGCCACATTACGAGAGCCT
* * * * * *
81236882 GTGTAAGACCATGTCTGGGACATGGTATCGGCACAGATATGCTAGAACTT
1 GTGTAAGACCATGTCTGGGACAT-GCATCGGC-CACAT-TACGAGAGCCT
81236932 GTGTAAGACCATGTCTGGGACATG
1 GTGTAAGACCATGTCTGGGACATG
81236956 GTATTGGCAC
Statistics
Matches: 177, Mismatches: 19, Indels: 33
0.77 0.08 0.14
Matches are distributed among these distances:
45 5 0.03
46 65 0.37
47 44 0.25
48 27 0.15
49 5 0.03
50 31 0.18
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (47 bp):
GTGTAAGACCATGTCTGGGACATGCATCGGCCACATTACGAGAGCCT
Found at i:81239035 original size:40 final size:40
Alignment explanation
Indices: 81238991--81239178 Score: 317
Period size: 40 Copynumber: 4.7 Consensus size: 40
81238981 GCTACTTGCT
81238991 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
81239031 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
81239071 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
81239111 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
81239150 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
81239179 CATCCGAATA
Statistics
Matches: 140, Mismatches: 5, Indels: 6
0.93 0.03 0.04
Matches are distributed among these distances:
38 1 0.01
39 34 0.24
40 104 0.74
41 1 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:81239169 original size:119 final size:119
Alignment explanation
Indices: 81238958--81239178 Score: 331
Period size: 119 Copynumber: 1.9 Consensus size: 119
81238948 AAACCAAGTA
* * * *
81238958 CCTTCGGAATTTAGCCGGATATAGCTACTTGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGT
1 CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
*
81239023 AACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
66 AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
81239077 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGG-CTTAGCCCGGA-ATT
1 CCTTCGGAACTTAG-CCGGATATAGCT-ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-T
*
81239139 AGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
63 AGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
81239179 CATCCGAATA
Statistics
Matches: 92, Mismatches: 7, Indels: 6
0.88 0.07 0.06
Matches are distributed among these distances:
118 1 0.01
119 62 0.67
120 29 0.32
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (119 bp):
CCTTCGGAACTTAGCCGGATATAGCTACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:81242662 original size:436 final size:436
Alignment explanation
Indices: 81241839--81242699 Score: 1452
Period size: 436 Copynumber: 2.0 Consensus size: 436
81241829 CTACGGAGGA
* ** * * *
81241839 TGACATAGAGAGTAACATGTTGGCTTTCACTGAAGGGACTGTGCCAATTGAGGGTGAGCCCGTGA
1 TGACATAGAGAGTAACACGCCGGCTCTCACTAAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
* * *
81241904 CTATGGGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTTAGTACACAGAG
66 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
* * *
81241969 TTTATTCGTGCGAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTTCCGT
131 TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
* *
81242034 AGCTCCACAAGGAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATTCAGAAGCAAG
196 AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCAGAAGCAAG
*
81242099 AGGCCCAGGAATTTCGAGCCAAAATAGATGATGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
261 AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
* *
81242164 ACCATCAGAGTATTTGATGAACTATCATACACGTCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
326 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
* *
81242229 CCTACGAGACTCGGCCTACCAATGATGGTATACTTAACACGTCGGC
391 CCTAAGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
* *
81242275 TGACGTAGAGAGTAACACGCCGGCTCTCACTAAAGGGACTGAGCCAGTTGAGGGTGAGCCCGTGA
1 TGACATAGAGAGTAACACGCCGGCTCTCACTAAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
*
81242340 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACGGAG
66 CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
* *
81242405 TTCGTTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCTAATTCCTCAGTATGCTCCCGT
131 TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
* * *
81242470 AGCTCCATAAGAAGTAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCGGAAGCAAG
196 AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCAGAAGCAAG
* *
81242535 GGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGTAGAGTTTTGGTTGGAGAAT
261 AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
*
81242600 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGTAGTGTCACT
326 ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
81242665 CCTAAGAGACTCGGCCTACCAATGATGGAATACTT
391 CCTAAGAGACTCGGCCTACCAATGATGGAATACTT
81242700 TCATGTCCGT
Statistics
Matches: 395, Mismatches: 30, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
436 395 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (436 bp):
TGACATAGAGAGTAACACGCCGGCTCTCACTAAAGGGACTGAGCCAATTGAGGGTGAGCCCGTGA
CTATGAGCCAAGACGGAGGGGCTAAAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAG
TTCATTCGTGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGT
AGCTCCACAAGAAGCAGACATGTTTAGGAGGGAGAAACCTCCGATAGACAAGATCCAGAAGCAAG
AGGCCCAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAAT
ACCATCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGCAGTGTCACT
CCTAAGAGACTCGGCCTACCAATGATGGAATACTTAACACGTCGGC
Found at i:81244429 original size:17 final size:17
Alignment explanation
Indices: 81244407--81244441 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81244397 CCTCCTCACA
81244407 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
81244424 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
81244441 C
1 C
81244442 ATGTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.37, G:0.29, T:0.00
Consensus pattern (17 bp):
CGGGCAGACAACACAGC
Found at i:81248442 original size:24 final size:22
Alignment explanation
Indices: 81248399--81248441 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
81248389 TTTAATGGAA
*
81248399 GATGAATATAAACCATGTGTGC
1 GATGAAAATAAACCATGTGTGC
81248421 GATGAAAATAAACCATGTGTG
1 GATGAAAATAAACCATGTGTG
81248442 TAAGCTCAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.26
Consensus pattern (22 bp):
GATGAAAATAAACCATGTGTGC
Found at i:81257971 original size:30 final size:30
Alignment explanation
Indices: 81257913--81257971 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
81257903 ATTTTCGAGC
* **
81257913 CTAGGGGAAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
* *
81257943 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGAAAAATGGTCATTTTACCAAAG
81257972 ATATGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:81258446 original size:46 final size:46
Alignment explanation
Indices: 81258314--81258530 Score: 178
Period size: 46 Copynumber: 4.7 Consensus size: 46
81258304 TGTGTGAGCT
* * * *
81258314 AGTGCAAGACATGTCTAGGACATGCATCGGCCAT--ATTATG-AGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCC-TCGA-GACGTA-AGCC
* * * * *
81258360 AGTGTAAGACCATGTCTGGGATATGGCATCGGCATTGAGACG-AGTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGACGTA-AGCC
* *
81258408 AGTGTAAGACATGTCTAGGACATGCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
* * *
81258454 AGTGTAAGACATGCCTGGGACATGCATCGG-CTACGAGATGT-A-TC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTAAGCC
81258498 AGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
81258531 ACAGATATGC
Statistics
Matches: 141, Mismatches: 21, Indels: 17
0.79 0.12 0.09
Matches are distributed among these distances:
44 10 0.07
45 16 0.11
46 65 0.46
47 26 0.18
48 23 0.16
49 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTAAGCC
Found at i:81262373 original size:118 final size:118
Alignment explanation
Indices: 81262158--81262373 Score: 254
Period size: 118 Copynumber: 1.8 Consensus size: 118
81262148 GGTTTATCGA
* * * * * *
81262158 TTTAAGTTCACAACCTCCAAAGTAGCTAGTAGGCCTAAGCTCCTAGCTGATATTATAAGAGCTCG
1 TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTAAGCTCCCAGCTGACATTATAAGAGCTCA
* * * * ** *
81262223 CAGAGTTAAGTTTGTAGCTCCAACACAGCTAGTGGACCTACGCTCGTTTGTAG
66 CAGAATTAAGCTCGCAAATCCAACACAACTAGTGGACCTACGCTCGTTTGTAG
* * *
81262276 TTTAAGATCGCAACCTCTAAAGTAGCTAGCAGACCTACA-TTCCCAGCTGACATTATAAGAGCTC
1 TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTA-AGCTCCCAGCTGACATTATAAGAGCTC
**
81262340 ACAGAATTAAGCTCGCAAATCCAGTACAACTAGT
65 ACAGAATTAAGCTCGCAAATCCAACACAACTAGT
81262374 AAGACTACCT
Statistics
Matches: 79, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
118 78 0.99
119 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (118 bp):
TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTAAGCTCCCAGCTGACATTATAAGAGCTCA
CAGAATTAAGCTCGCAAATCCAACACAACTAGTGGACCTACGCTCGTTTGTAG
Found at i:81263622 original size:25 final size:28
Alignment explanation
Indices: 81263592--81263650 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
81263582 TTTATGAAGG
*
81263592 AAATAAAAATATT-TAAATTTAT-TT-T
1 AAATAAAAATATTATAAAATTATGTTGT
81263617 AAATAAAAAATATTATAAAATTATGTTGT
1 AAAT-AAAAATATTATAAAATTATGTTGT
81263646 AAATA
1 AAATA
81263651 TTGATTTACC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.14
26 9 0.31
27 8 0.28
28 3 0.10
29 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (28 bp):
AAATAAAAATATTATAAAATTATGTTGT
Found at i:81264504 original size:28 final size:28
Alignment explanation
Indices: 81264472--81264525 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
81264462 TGTAAGAAAT
* * *
81264472 TATTAATAATATTATTTAAATTATAATA
1 TATTAATAATAGTATTCAAATCATAATA
*
81264500 TATTAATATTAGTATTCAAATCATAA
1 TATTAATAATAGTATTCAAATCATAA
81264526 CGAATATTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (28 bp):
TATTAATAATAGTATTCAAATCATAATA
Found at i:81265274 original size:25 final size:24
Alignment explanation
Indices: 81265230--81265278 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 24
81265220 AATTTAAATT
*
81265230 TTATATTAATATGAAGTAAATATAA
1 TTATATTAATATGAAATAAA-ATAA
*
81265255 TTATATTAATATTAAATAAAATAA
1 TTATATTAATATGAAATAAAATAA
81265279 AAATCCCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 4 0.18
25 18 0.82
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.41
Consensus pattern (24 bp):
TTATATTAATATGAAATAAAATAA
Found at i:81267097 original size:21 final size:21
Alignment explanation
Indices: 81267073--81267120 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 21
81267063 TAGAGTCGTA
* *
81267073 TTAAAATTTAGTTAAGAAATT
1 TTAAAATTTAGATAACAAATT
** *
81267094 TTAATGTTTAGATAACTAATT
1 TTAAAATTTAGATAACAAATT
81267115 TTAAAA
1 TTAAAA
81267121 AAAAAGGACT
Statistics
Matches: 20, Mismatches: 7, Indels: 0
0.74 0.26 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.46, C:0.02, G:0.08, T:0.44
Consensus pattern (21 bp):
TTAAAATTTAGATAACAAATT
Found at i:81267337 original size:58 final size:58
Alignment explanation
Indices: 81267256--81267385 Score: 210
Period size: 58 Copynumber: 2.3 Consensus size: 58
81267246 TAATAGAAAC
* *
81267256 AAAAAC-AATTAA-GTTTGGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
* *
81267312 AAAAATAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTTCAAAATT
1 AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
81267370 AAAAACAAATTAATTT
1 AAAAACAAATTAATTT
81267386 GAAGAAATAA
Statistics
Matches: 67, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
56 5 0.07
57 6 0.09
58 56 0.84
ACGTcount: A:0.43, C:0.06, G:0.10, T:0.41
Consensus pattern (58 bp):
AAAAACAAATTAATTTTTAGCTTATAATTGATGGCAATTTTGTAAATTTTGCAAAATT
Found at i:81277956 original size:43 final size:43
Alignment explanation
Indices: 81277885--81278007 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 43
81277875 ACTTCGGTTC
* * * *
81277885 ATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* * *
81277928 CTCCAATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* *
81277971 ATTCGATGATGCACTATGTGTGCCAGTATATTTTCTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTT
81278008 CGACTTGTCT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (43 bp):
ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
Found at i:81278024 original size:43 final size:43
Alignment explanation
Indices: 81277890--81278043 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 43
81277880 GGTTCATCCA
* * * * * **
81277890 ATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCA
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* *
81277933 ATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTTAT-TCG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCT-G
* * *
81277976 ATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* * * *
81278019 TTGATGCATTGTGTGTGCCAATATA
1 ATGATGCACTATGTGTGCCAGTATA
81278044 ATTACATCGG
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
43 90 0.99
44 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (43 bp):
ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
Found at i:81278035 original size:86 final size:86
Alignment explanation
Indices: 81277880--81278078 Score: 200
Period size: 86 Copynumber: 2.3 Consensus size: 86
81277870 GTTATACTTC
* * * * * * *
81277880 GGTTCATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCAATGATGCACTAT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
* * * * *
81277945 GTGTGCTAGTATATTTTCTTA
66 GTGTGCCAATATAATTACATA
* * *** * *
81277966 GGTTTATTCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTGTTGATGCATTGT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
*
81278031 GTGTGCCAATATAATTACATC
66 GTGTGCCAATATAATTACATA
*
81278052 GGTTTATCCGATGATACACTTATGTGT
1 GGTTTATCCGATGATGCAC-TATGTGT
81278079 CAATGTGATT
Statistics
Matches: 90, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
86 83 0.92
87 7 0.08
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (86 bp):
GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
GTGTGCCAATATAATTACATA
Done.