Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 238 of 297
Found at i:81281135 original size:43 final size:43
Alignment explanation
Indices: 81281064--81281186 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 43
81281054 ACTTCGGTTC
* * * *
81281064 ATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* * *
81281107 CTCCAATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* *
81281150 ATTCGATGATGCACTATGTGTGCCAGTATATTTTCTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTT
81281187 CGACTTGTCT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (43 bp):
ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
Found at i:81281203 original size:43 final size:43
Alignment explanation
Indices: 81281069--81281222 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 43
81281059 GGTTCATCCA
* * * * * **
81281069 ATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCA
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* *
81281112 ATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTTAT-TCG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCT-G
* * *
81281155 ATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* * * *
81281198 TTGATGCATTGTGTGTGCCAATATA
1 ATGATGCACTATGTGTGCCAGTATA
81281223 ATTACATCGG
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
43 90 0.99
44 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (43 bp):
ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
Found at i:81281214 original size:86 final size:86
Alignment explanation
Indices: 81281059--81281257 Score: 200
Period size: 86 Copynumber: 2.3 Consensus size: 86
81281049 GTTATACTTC
* * * * * * *
81281059 GGTTCATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCAATGATGCACTAT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
* * * * *
81281124 GTGTGCTAGTATATTTTCTTA
66 GTGTGCCAATATAATTACATA
* * *** * *
81281145 GGTTTATTCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTGTTGATGCATTGT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
*
81281210 GTGTGCCAATATAATTACATC
66 GTGTGCCAATATAATTACATA
*
81281231 GGTTTATCCGATGATACACTTATGTGT
1 GGTTTATCCGATGATGCAC-TATGTGT
81281258 CAATGTGATT
Statistics
Matches: 90, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
86 83 0.92
87 7 0.08
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (86 bp):
GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
GTGTGCCAATATAATTACATA
Found at i:81285649 original size:43 final size:43
Alignment explanation
Indices: 81285578--81285700 Score: 165
Period size: 43 Copynumber: 2.9 Consensus size: 43
81285568 ACTTCGGTTC
* * * *
81285578 ATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* * *
81285621 CTCCAATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
* *
81285664 ATTCGATGATGCACTATGTGTGCCAGTATATTTTCTT
1 ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTT
81285701 CGACTTGTCT
Statistics
Matches: 69, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.22, C:0.17, G:0.18, T:0.43
Consensus pattern (43 bp):
ATCCAATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTT
Found at i:81285717 original size:43 final size:43
Alignment explanation
Indices: 81285583--81285736 Score: 148
Period size: 43 Copynumber: 3.6 Consensus size: 43
81285573 GGTTCATCCA
* * * * * **
81285583 ATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCA
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* *
81285626 ATGATGCACTATGTGTGCTAGTATATTTTCTTAGGTTTAT-TCG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCT-G
* * *
81285669 ATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTG
1 ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
* * * *
81285712 TTGATGCATTGTGTGTGCCAATATA
1 ATGATGCACTATGTGTGCCAGTATA
81285737 ATTACATCGG
Statistics
Matches: 91, Mismatches: 18, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
43 90 0.99
44 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.20, T:0.43
Consensus pattern (43 bp):
ATGATGCACTATGTGTGCCAGTATATTTTCTTAGATTTATCTG
Found at i:81285728 original size:86 final size:86
Alignment explanation
Indices: 81285573--81285771 Score: 200
Period size: 86 Copynumber: 2.3 Consensus size: 86
81285563 GTTATACTTC
* * * * * * *
81285573 GGTTCATCCAATGATGCACTGTATGCGCCAGTATATTTTCTTTGATTTCTCCAATGATGCACTAT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
* * * * *
81285638 GTGTGCTAGTATATTTTCTTA
66 GTGTGCCAATATAATTACATA
* * *** * *
81285659 GGTTTATTCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTGTCTGTTGATGCATTGT
1 GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
*
81285724 GTGTGCCAATATAATTACATC
66 GTGTGCCAATATAATTACATA
*
81285745 GGTTTATCCGATGATACACTTATGTGT
1 GGTTTATCCGATGATGCAC-TATGTGT
81285772 CAATGTGATT
Statistics
Matches: 90, Mismatches: 22, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
86 83 0.92
87 7 0.08
ACGTcount: A:0.22, C:0.17, G:0.20, T:0.42
Consensus pattern (86 bp):
GGTTTATCCGATGATGCACTATGTGTGCCAGTATATTTTCTTCGACTTCTCCAATGATGCACTAT
GTGTGCCAATATAATTACATA
Found at i:81290459 original size:30 final size:30
Alignment explanation
Indices: 81290402--81290459 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
81290392 TTTTTGAACC
**
81290402 TAGGGGAACAATGGTCATTTTGTCAAAGTT
1 TAGGGGAACAATGGTCATTTTACCAAAGTT
*
81290432 TAGGGGCAA-AATGGTCGTTTTACCAAAG
1 TAGGGG-AACAATGGTCATTTTACCAAAG
81290460 ATATGAATTT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
30 22 0.92
31 2 0.08
ACGTcount: A:0.31, C:0.12, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGAACAATGGTCATTTTACCAAAGTT
Found at i:81290855 original size:46 final size:44
Alignment explanation
Indices: 81290797--81291006 Score: 158
Period size: 46 Copynumber: 4.6 Consensus size: 44
81290787 TCACTTGTGT
*
81290797 GAGCTAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-CATTA-GA
* * *
81290843 GAGCCAGTGTAAGACCATGTCTGGGATATGTCATCGG--TATTGAAACAA
1 GAGCCAGTGTAAGA-CATGTCTGGGACATG-CATCGGCCCATT---A-GA
* * * *
81290891 GTGCTAGTGTAAGACATGTCTGGGACATGCATCAGCCTCGAGTAGTA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCC-C-ATTAG-A
* * *
81290938 -AGTCAGTGTAAGACATGTCTGGGACATGCATCGG-CTATGAGA
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
* *
81290980 TGTGTCAGTGTAAGAGCATGTCTGGGA
1 -GAGCCAGTGTAAGA-CATGTCTGGGA
81291007 TATGGTATCG
Statistics
Matches: 131, Mismatches: 20, Indels: 27
0.74 0.11 0.15
Matches are distributed among these distances:
42 1 0.01
43 3 0.02
44 12 0.09
45 15 0.11
46 48 0.37
47 30 0.23
48 20 0.15
50 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCCATTAGA
Found at i:81293478 original size:436 final size:436
Alignment explanation
Indices: 81292660--81293515 Score: 1444
Period size: 436 Copynumber: 2.0 Consensus size: 436
81292650 GAGGATGACA
81292660 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
1 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
* *
81292725 GGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTTAGTACACAGAGTTCAT
66 AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAGTTCAT
*
81292790 TCATGCGAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
131 TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
* * *
81292855 CACAAGGAGCAGACATGTTTAGAAGGGAGAAACCTCCGATAGACAAGATTCGGAAGCAAGAGGCC
196 CACAACGAGCAGACATGTTTAGAAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGAGGCC
*
81292920 GAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAGCAGAGTTTTGGTTGGAGAATACCAT
261 GAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCAT
* *
81292985 CAGAGTATTTGATGAACTATCATACACACCTGAAGAGTGTGTGAAGTGTGCAGTGTCACAACTAC
326 CAGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTAC
*
81293050 GAGACTCGGCGTACCAATGATGGAATACTTAACACGCCGGCTAACG
391 GAGACTCGGCCTACCAATGATGGAATACTTAACACGCCGGCTAACG
* *
81293096 TAGAGAGTAACATGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGTCCGTGACTATG
1 TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
* * * *
81293161 AGCCAAGATGGAGGGGCTAGAGAAGCCTACCTCGAAATGATGGATGCTAAGTACACGGAGTTCGT
66 AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAGTTCAT
* * * *
81293226 TCGTGCAAATCCAGACACTCCACCTCCCCTACCTCCTCTAATTCCTCAGTATGCTCCCGTAGCTC
131 TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
*
81293291 CACAACGAGCAGACATGTTTA-AGAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGGGGC
196 CACAACGAGCAGACATGTTTAGA-AGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGAGGC
* *
81293355 CTAGGAATTTCGTGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCA
260 CGAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCA
* * **
81293420 TCAGAGAATTTGATGAACTATCATACACGCCTGAAGAGTGCGTGAAGTGTGTAGTGTCACTCCTA
325 TCAGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTA
*
81293485 CGAGACTTGGCCTACCAATGATGGAATACTT
390 CGAGACTCGGCCTACCAATGATGGAATACTT
81293516 TCGTGTCCAT
Statistics
Matches: 391, Mismatches: 28, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
435 1 0.00
436 390 1.00
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (436 bp):
TAGAGAGTAACACGCCGGCTCTTACTGAAGGGACTGTGCCAGTTGAGGGTGAGCCCGTGACTATG
AGCCAAGACGGAGGGGCTAGAGAAGCCTACCTCCAAATGATGGATGCTAAGTACACAGAGTTCAT
TCATGCAAATCCAAACACTCCACCTCCCCCACCTCCTCCAATTCCTCAGTATGCTCCCGTAGCTC
CACAACGAGCAGACATGTTTAGAAGGGAGAAACCTCCGATAGACAAGATCCGAAAGCAAGAGGCC
GAGGAATTTCGAGCCAAAATAGATGACGACCCGGAGAGAACAGAGTTTTGGTTGGAGAATACCAT
CAGAGAATTTGATGAACTATCATACACACCTGAAGAGTGCGTGAAGTGTGCAGTGTCACAACTAC
GAGACTCGGCCTACCAATGATGGAATACTTAACACGCCGGCTAACG
Found at i:81295247 original size:17 final size:17
Alignment explanation
Indices: 81295225--81295259 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81295215 CCTCCTCACA
81295225 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
81295242 CGGGCAGACAACACAGC
1 CGGGCAGACAACACAGC
81295259 C
1 C
81295260 ATGTCAATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.34, C:0.37, G:0.29, T:0.00
Consensus pattern (17 bp):
CGGGCAGACAACACAGC
Found at i:81308618 original size:30 final size:30
Alignment explanation
Indices: 81308560--81308618 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 30
81308550 ATTTTCGAGC
* **
81308560 CTAGGGGAAAAATGGTTATTTTGTCAAAGT
1 CTAGGGGAAAAATGGTCATTTTACCAAAGT
* *
81308590 CTAGGGGCAAAATGGTCGTTTTACCAAAG
1 CTAGGGGAAAAATGGTCATTTTACCAAAG
81308619 ATATGAATTT
Statistics
Matches: 24, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.27, T:0.29
Consensus pattern (30 bp):
CTAGGGGAAAAATGGTCATTTTACCAAAGT
Found at i:81309139 original size:46 final size:44
Alignment explanation
Indices: 81308957--81309178 Score: 171
Period size: 46 Copynumber: 4.8 Consensus size: 44
81308947 TCACTTGTGT
* * **
81308957 GAGCTAGTGTAAGACATGTCTAGGACATGCATCGGCCATATTATGA-
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGG-C-TACGA-GAC
* * *
81309003 GAGCCAGTGTAAGACCATGTCTGGGATATGGCATCGTC-ATTGAGAC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTA-CGAGAC
* * **
81309049 GAGTGCTAGTGTAAGACATGTCTAGGACATGCATCATCCT-CGAGAC
1 GA--GCCAGTGTAAGACATGTCTGGGACATGCATC-GGCTACGAGAC
* *
81309095 GTAAGCCAGTGTAAGACATGCCTGGGACATGCATCGGCTACGAGAT
1 G--AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAC
* *
81309141 GTGTCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC
81309179 ACAGATATGC
Statistics
Matches: 143, Mismatches: 20, Indels: 26
0.76 0.11 0.14
Matches are distributed among these distances:
44 11 0.08
45 18 0.13
46 70 0.49
47 26 0.18
48 18 0.13
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.23
Consensus pattern (44 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGAGAC
Found at i:81312989 original size:118 final size:118
Alignment explanation
Indices: 81312774--81312989 Score: 254
Period size: 118 Copynumber: 1.8 Consensus size: 118
81312764 GGTTTATCGA
* * * * * *
81312774 TTTAAGTTCACAACCTCCAAAGTAGCTAGTAGGCCTAAGCTCCTAGCTGATATTATAAGAGCTCG
1 TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTAAGCTCCCAGCTGACATTATAAGAGCTCA
* * * * ** *
81312839 CAGAGTTAAGTTTGTAGCTCCAACACAGCTAGTGGACCTACGCTCGTTTGTAG
66 CAGAATTAAGCTCGCAAATCCAACACAACTAGTGGACCTACGCTCGTTTGTAG
* * *
81312892 TTTAAGATCGCAACCTCTAAAGTAGCTAGCAGACCTACA-TTCCCAGCTGACATTATAAGAGCTC
1 TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTA-AGCTCCCAGCTGACATTATAAGAGCTC
**
81312956 ACAGAATTAAGCTCGCAAATCCAGTACAACTAGT
65 ACAGAATTAAGCTCGCAAATCCAACACAACTAGT
81312990 AAGACTACCT
Statistics
Matches: 79, Mismatches: 18, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
118 78 0.99
119 1 0.01
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (118 bp):
TTTAAGATCACAACCTCCAAAGTAGCTAGCAGACCTAAGCTCCCAGCTGACATTATAAGAGCTCA
CAGAATTAAGCTCGCAAATCCAACACAACTAGTGGACCTACGCTCGTTTGTAG
Found at i:81313240 original size:110 final size:110
Alignment explanation
Indices: 81313047--81313265 Score: 420
Period size: 110 Copynumber: 2.0 Consensus size: 110
81313037 GCAGCTTAAA
*
81313047 TTCCTTTGAATTTGCTGATTAAAATTCACAACTCAGAATGTTTAAGAGCATTCGAGTCAAAGTTG
1 TTCCTTTGAATTTGCTGATTAAAATTCACAACTCAGAATGTTTAAGAGCATTCAAGTCAAAGTTG
81313112 ATAATAATTCACCTCAAACAGAGTCATTAGATTGCGCTAAGTCAG
66 ATAATAATTCACCTCAAACAGAGTCATTAGATTGCGCTAAGTCAG
*
81313157 TTCCTTTGAATTTGCTGATTAAAATTCACAACTCAGATTGTTTAAGAGCATTCAAGTCAAAGTTG
1 TTCCTTTGAATTTGCTGATTAAAATTCACAACTCAGAATGTTTAAGAGCATTCAAGTCAAAGTTG
81313222 ATAATAATTCACCTCAAACAGAGTCATTAGATTGCGCTAAGTCA
66 ATAATAATTCACCTCAAACAGAGTCATTAGATTGCGCTAAGTCA
81313266 ATTAAAGGTT
Statistics
Matches: 107, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
110 107 1.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.32
Consensus pattern (110 bp):
TTCCTTTGAATTTGCTGATTAAAATTCACAACTCAGAATGTTTAAGAGCATTCAAGTCAAAGTTG
ATAATAATTCACCTCAAACAGAGTCATTAGATTGCGCTAAGTCAG
Found at i:81314348 original size:25 final size:28
Alignment explanation
Indices: 81314318--81314376 Score: 79
Period size: 26 Copynumber: 2.2 Consensus size: 28
81314308 TTTATGAAGG
*
81314318 AAATAAAAATATT-TAAATTTAT-TT-T
1 AAATAAAAATATTATAAAATTATGTTGT
81314343 AAATAAAAAATATTATAAAATTATGTTGT
1 AAAT-AAAAATATTATAAAATTATGTTGT
81314372 AAATA
1 AAATA
81314377 TTGATTTACC
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.14
26 9 0.31
27 8 0.28
28 3 0.10
29 5 0.17
ACGTcount: A:0.56, C:0.00, G:0.03, T:0.41
Consensus pattern (28 bp):
AAATAAAAATATTATAAAATTATGTTGT
Found at i:81315230 original size:28 final size:28
Alignment explanation
Indices: 81315198--81315251 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
81315188 TGTAAGAAAT
* * *
81315198 TATTAATAATATTATTTAAATTATAATA
1 TATTAATAATAGTATTCAAATCATAATA
*
81315226 TATTAATATTAGTATTCAAATCATAA
1 TATTAATAATAGTATTCAAATCATAA
81315252 CGAATATTTG
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.48, C:0.04, G:0.02, T:0.46
Consensus pattern (28 bp):
TATTAATAATAGTATTCAAATCATAATA
Found at i:81316465 original size:120 final size:120
Alignment explanation
Indices: 81316252--81316489 Score: 467
Period size: 120 Copynumber: 2.0 Consensus size: 120
81316242 TCGATCCCTG
81316252 TAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAACAT
1 TAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAACAT
81316317 ATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCT
66 ATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCT
*
81316372 TAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAATAT
1 TAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAACAT
81316437 ATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTT
66 ATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTT
81316490 TGAGTTGTGA
Statistics
Matches: 117, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 117 1.00
ACGTcount: A:0.38, C:0.15, G:0.19, T:0.28
Consensus pattern (120 bp):
TAACATGGGAGACTTTGACTAATAAACTGTACTAATTGGCCCGACCAAAAATTCTAGAAAAACAT
ATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAAATCACGAAACTGATTTTCT
Found at i:81319554 original size:48 final size:48
Alignment explanation
Indices: 81319478--81319956 Score: 438
Period size: 48 Copynumber: 9.9 Consensus size: 48
81319468 ATACTAGGGT
* * *
81319478 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGGCATTGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * * *
81319526 TATGAGAGCCAGTGTAAAACCATGTTTGGGACATGCCATTGGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * ** *
81319574 TATGTGAGCTAGTGTAAGACCATGTTCAGAACATGGCATCGGCATTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * * *
81319622 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * *
81319670 TATGTGAGCCAGTATAAAACCATGTTTGGAACATGACATTGGCATTGA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * * **
81319718 TATGAGAGCTAGTGTAAGACCATGTCTAGAACATGGCATCAGCCTCAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
* * * * *
81319766 CATGTGAGCCAGTGTAAGATCATATTTGGAACATGGCATCGGCATTAA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
** * * * *
81319814 TATGAGAGCTTGTGTAAGACCATGTCTTAG-ACATGGCATCAGCCTCGA
1 TATGAGAGCCAGTGTAAGACCATGT-TTGGAACATGGCATCGGCATTGA
* * * * * * * *
81319862 CATGTGGGCTAGTGTAAGACCATGTTTGGAACATGACATTGACACTGATA
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTG--A
* * *
81319912 TATAAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT
1 TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAT
81319957 CTTACCCTTT
Statistics
Matches: 333, Mismatches: 94, Indels: 6
0.77 0.22 0.01
Matches are distributed among these distances:
47 3 0.01
48 292 0.88
49 3 0.01
50 35 0.11
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (48 bp):
TATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCATTGA
Found at i:81319644 original size:96 final size:96
Alignment explanation
Indices: 81319478--81319951 Score: 624
Period size: 96 Copynumber: 4.9 Consensus size: 96
81319468 ATACTAGGGT
* * *
81319478 TATGTGAGCCAGTGTAAGACCATATTTGGAACATGGCATTGGCATTGATATGAGAGCCAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTAATATGAGAGCTAGTGTAA
* * * **
81319543 AACCATGTTTGGGACATGCCATTGGCCTCGA
66 GACCATGTCTGGGACATGGCATCAGCCTCGA
* ** *
81319574 TATGTGAGCTAGTGTAAGACCATGTTCAGAACATGGCATCGGCATTAATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTAATATGAGAGCTAGTGTAA
81319639 GACCATGTCTGGGACATGGCATCAGCCTCGA
66 GACCATGTCTGGGACATGGCATCAGCCTCGA
* * * *
81319670 TATGTGAGCCAGTATAAAACCATGTTTGGAACATGACATTGGCATTGATATGAGAGCTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTAATATGAGAGCTAGTGTAA
* * *
81319735 GACCATGTCTAGAACATGGCATCAGCCTCAA
66 GACCATGTCTGGGACATGGCATCAGCCTCGA
* * * * *
81319766 CATGTGAGCCAGTGTAAGATCATATTTGGAACATGGCATCGGCATTAATATGAGAGCTTGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTAATATGAGAGCTAGTGTAA
**
81319831 GACCATGTCTTAGACATGGCATCAGCCTCGA
66 GACCATGTCTGGGACATGGCATCAGCCTCGA
* * * * * * * *
81319862 CATGTGGGCTAGTGTAAGACCATGTTTGGAACATGACATTGACACTGATATATAAGAGCCAGTGT
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCA-TTA-ATATGAGAGCTAGTGT
81319927 AAGACCATGTCTGGGACATGGCATC
64 AAGACCATGTCTGGGACATGGCATC
81319952 GGCATCTTAC
Statistics
Matches: 327, Mismatches: 49, Indels: 2
0.87 0.13 0.01
Matches are distributed among these distances:
96 289 0.88
97 2 0.01
98 36 0.11
ACGTcount: A:0.30, C:0.18, G:0.26, T:0.26
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATTGGCATTAATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCAGCCTCGA
Found at i:81327442 original size:48 final size:48
Alignment explanation
Indices: 81327386--81327600 Score: 288
Period size: 48 Copynumber: 4.5 Consensus size: 48
81327376 GTGTAAAGGA
* * *
81327386 ACATGGCATCGGCATTGATATGAGAGCTAGTGTAAGAACATGTCTGGG
1 ACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* * *
81327434 ACATGGCATCAGCCTCGATATGTGAGCTAGTGTAAGACCATGTGTGGG
1 ACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* * * *
81327482 ACATGGCATTGGCCTCGATATGTGAGCTAGTGTAAGACCCTGTATGGG
1 ACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
* *
81327530 ACATGGCATCGGCATCGATATGTGAGCTAGTATAAGACCATG-CTTGGA
1 ACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATGTC-TGGG
* *
81327578 ACATGGCATCGACACCGATATGT
1 ACATGGCATCGGCATCGATATGT
81327601 AAGGCCATGT
Statistics
Matches: 148, Mismatches: 18, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
48 148 1.00
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (48 bp):
ACATGGCATCGGCATCGATATGTGAGCTAGTGTAAGACCATGTCTGGG
Found at i:81329450 original size:48 final size:48
Alignment explanation
Indices: 81329362--81329643 Score: 296
Period size: 48 Copynumber: 5.9 Consensus size: 48
81329352 ATACTAGGGT
* * * * *
81329362 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGA
* * * *
81329410 TATGAGAGCTAGGGTAAGACCATGTCTGGGACATGGCATCGGCCTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGA
* * * * * *
81329458 TATGTGAGCCAGTGAAAGACCATGTTTGGAACATGGCATCAACATTTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGA
* * *
81329506 TATGAGAACTAGTGTAAGACCATGTCTAGG-ACATGGCATCGACCTCGA
1 TATGAGAGCTAGTGTAAGACCATGTCT-GGAACATGGCATCGACATTGA
* * * * * * *
81329554 CATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGTATCAACACTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGA
* *
81329602 TTATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 -TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCG
81329644 GCATCTTACC
Statistics
Matches: 185, Mismatches: 46, Indels: 5
0.78 0.19 0.02
Matches are distributed among these distances:
47 2 0.01
48 148 0.80
49 35 0.19
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.26
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACATTGA
Found at i:81329526 original size:96 final size:96
Alignment explanation
Indices: 81329362--81329645 Score: 424
Period size: 96 Copynumber: 2.9 Consensus size: 96
81329352 ATACTAGGGT
* * *
81329362 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGACATCGACATTTATATGAGAGCTAGGGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAA
*
81329427 GACCATGTCTGGGACATGGCATCGGCCTTGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* *
81329458 TATGTGAGCCAGTGAAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAACTAGTGTAA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAA
* *
81329523 GACCATGTCTAGGACATGGCATCGACCTCGA
66 GACCATGTCTGGGACATGGCATCGGCCTCGA
* * * * * * *
81329554 CATGTGGGCTAGTGTAAGACCATGTTTGGAACATGGTATCAACACTGATTATGAGAGCCAGTGTA
1 TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTTA-TATGAGAGCTAGTGTA
81329619 AGACCATGTCTGGGACATGGCATCGGC
65 AGACCATGTCTGGGACATGGCATCGGC
81329646 ATCTTACCCT
Statistics
Matches: 168, Mismatches: 19, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
96 129 0.77
97 39 0.23
ACGTcount: A:0.29, C:0.18, G:0.27, T:0.25
Consensus pattern (96 bp):
TATGTGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCAACATTTATATGAGAGCTAGTGTAA
GACCATGTCTGGGACATGGCATCGGCCTCGA
Found at i:81330859 original size:21 final size:21
Alignment explanation
Indices: 81330826--81330873 Score: 60
Period size: 21 Copynumber: 2.3 Consensus size: 21
81330816 GTTAAGAGGA
81330826 CACACGGGCGTGTCACCCTCC
1 CACACGGGCGTGTCACCCTCC
* * * *
81330847 CACATGGGTGTGTCGCCCTCT
1 CACACGGGCGTGTCACCCTCC
81330868 CACACG
1 CACACG
81330874 AGCGAGTGCC
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.15, C:0.42, G:0.25, T:0.19
Consensus pattern (21 bp):
CACACGGGCGTGTCACCCTCC
Found at i:81336821 original size:6 final size:6
Alignment explanation
Indices: 81336789--81336820 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
81336779 AGTAAACAAA
81336789 AAAAT- AAAATG AAAATG AAAATG AAAAT- AAAA
1 AAAATG AAAATG AAAATG AAAATG AAAATG AAAA
81336821 AGGCTAAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
5 9 0.35
6 17 0.65
ACGTcount: A:0.75, C:0.00, G:0.09, T:0.16
Consensus pattern (6 bp):
AAAATG
Found at i:81340536 original size:91 final size:90
Alignment explanation
Indices: 81340379--81340556 Score: 293
Period size: 91 Copynumber: 2.0 Consensus size: 90
81340369 AAAGCACTAG
* *
81340379 ATGCTAGCTAGGTATAAAACAGGTTAGATCCCAGTTCCACCCATAAAAAATCCACATTAGAAAAG
1 ATGCTAGCTAGGTATAAAACAGGTGAGATCCCAGTTCCACCCACAAAAAATCCACATTAGAAAAG
81340444 TATCTTACTTTAAAAACCCAACCAA
66 TATCTTACTTTAAAAACCCAACCAA
* * *
81340469 ATGCTACGCTAGGTATAAAACAGGTGAGATCCCAGTTCCTCCCGCAAAAAATCCACATTAGAGAA
1 ATGCTA-GCTAGGTATAAAACAGGTGAGATCCCAGTTCCACCCACAAAAAATCCACATTAGAAAA
*
81340534 GTATCTTGCTTTAAAAACCCAAC
65 GTATCTTACTTTAAAAACCCAAC
81340557 TCATAAGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
90 6 0.07
91 75 0.93
ACGTcount: A:0.39, C:0.24, G:0.13, T:0.23
Consensus pattern (90 bp):
ATGCTAGCTAGGTATAAAACAGGTGAGATCCCAGTTCCACCCACAAAAAATCCACATTAGAAAAG
TATCTTACTTTAAAAACCCAACCAA
Found at i:81343995 original size:48 final size:48
Alignment explanation
Indices: 81343939--81344124 Score: 228
Period size: 48 Copynumber: 3.9 Consensus size: 48
81343929 GTGTAAAGGA
* * * * ** *
81343939 ACATGGCATCGGCATTGATATGAGAGCTACTGTAAAAACATGTCCGAG
1 ACATGGCATCGGCATCGATATGTGAGCTACTGTAAGACCATGTGTGGG
** * * *
81343987 ACATGGCATTAGCCTCGATATGTGAGGTAGTGTAAGACCATGTGTGGG
1 ACATGGCATCGGCATCGATATGTGAGCTACTGTAAGACCATGTGTGGG
* * *
81344035 ACATGGCATCGGCCTCGATATGTGAGCCAATGTAAGACCATGTGTGGG
1 ACATGGCATCGGCATCGATATGTGAGCTACTGTAAGACCATGTGTGGG
*
81344083 ACATGGCATCGGCATCGATATGTGAGCTACTATAAGACCATG
1 ACATGGCATCGGCATCGATATGTGAGCTACTGTAAGACCATG
81344125 CTTGGAACAC
Statistics
Matches: 117, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
48 117 1.00
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
ACATGGCATCGGCATCGATATGTGAGCTACTGTAAGACCATGTGTGGG
Found at i:81344196 original size:98 final size:96
Alignment explanation
Indices: 81343955--81344196 Score: 245
Period size: 96 Copynumber: 2.5 Consensus size: 96
81343945 CATCGGCATT
* * * * * * * * * *
81343955 GATATGAGAGCTACTGTAAAAACATGTCCGAGACATGGCATTAGCCTCGATATGTGAGGTAGTGT
1 GATATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATTAGCATCGATATGTGAGCTACTAT
* * * **
81344020 AAGACCATGTGTGGGACATGGCATCGGCCTC
66 AAGACCATGTGTGGAACACGACATCAACCTC
* * **
81344051 GATATGTGAGCCAATGTAAGACCATGTGTGGGACATGGCATCGGCATCGATATGTGAGCTACTAT
1 GATATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATTAGCATCGATATGTGAGCTACTAT
81344116 AAGACCATGCT-TGGAACACGACATCAACAC-C
66 AAGACCATG-TGTGGAACACGACATCAAC-CTC
* *
81344147 GATATATGAGAGCCAGTGTAAGGCCATGTCTGGGACATGGCATTAGCATC
1 G--ATATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATTAGCATC
81344197 TTACTCTTTT
Statistics
Matches: 117, Mismatches: 25, Indels: 6
0.79 0.17 0.04
Matches are distributed among these distances:
96 74 0.63
97 2 0.02
98 41 0.35
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (96 bp):
GATATGAGAGCCAATGTAAGACCATGTCTGGGACATGGCATTAGCATCGATATGTGAGCTACTAT
AAGACCATGTGTGGAACACGACATCAACCTC
Found at i:81352448 original size:6 final size:6
Alignment explanation
Indices: 81352437--81352462 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
81352427 TGAAAATACC
81352437 AAAAGA AAAAGA AAAAGA AAAAGA AA
1 AAAAGA AAAAGA AAAAGA AAAAGA AA
81352463 GCAACATTCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.85, C:0.00, G:0.15, T:0.00
Consensus pattern (6 bp):
AAAAGA
Found at i:81352956 original size:15 final size:15
Alignment explanation
Indices: 81352922--81352966 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
81352912 TCGGACTAAA
* *
81352922 TTGAATGAATTTTTGT
1 TTGAAT-AAGTTTAGT
81352938 TTGAATAAGTTTAGT
1 TTGAATAAGTTTAGT
*
81352953 TTGAATATGTTTAG
1 TTGAATAAGTTTAG
81352967 ATCAAGAACC
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
15 20 0.77
16 6 0.23
ACGTcount: A:0.29, C:0.00, G:0.20, T:0.51
Consensus pattern (15 bp):
TTGAATAAGTTTAGT
Found at i:81353347 original size:43 final size:42
Alignment explanation
Indices: 81353265--81353506 Score: 244
Period size: 43 Copynumber: 5.7 Consensus size: 42
81353255 TAGGATTTTT
* *
81353265 GATATGTGATTA-GTGTAAGACCCTGTCTAGCACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCC-GTCTGGGACAGTGGCATC
*
81353307 GATATGTGATTACGTGTAAGACCACGTTTGGGAC-GTTGGCATC
1 GATATGTGATTACGTGTAAGACC-CGTCTGGGACAG-TGGCATC
* * *
81353350 GATATGTGATTACGTGTAAGACCCTATCCGAGACAGTGGCATC
1 GATATGTGATTACGTGTAAGACCC-GTCTGGGACAGTGGCATC
* *
81353393 GATATGTGATTACGTGT---ACCCTGTTTGGGACAGTGGCATT
1 GATATGTGATTACGTGTAAGACCC-GTCTGGGACAGTGGCATC
* ** *
81353433 GATATGTGATTACGTGTAAGACGACGTCTAAGA-AGTTGGCATT
1 GATATGTGATTACGTGTAAGAC-CCGTCTGGGACAG-TGGCATC
* *
81353476 GATATGTGATTACATATAAGACCACGTCTGG
1 GATATGTGATTACGTGTAAGACC-CGTCTGG
81353507 AATGTTGGCA
Statistics
Matches: 168, Mismatches: 21, Indels: 21
0.80 0.10 0.10
Matches are distributed among these distances:
40 35 0.21
42 16 0.10
43 114 0.68
44 3 0.02
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (42 bp):
GATATGTGATTACGTGTAAGACCCGTCTGGGACAGTGGCATC
Found at i:81353473 original size:83 final size:83
Alignment explanation
Indices: 81353263--81353488 Score: 284
Period size: 83 Copynumber: 2.7 Consensus size: 83
81353253 CATAGGATTT
81353263 TTGATATGTGATTA-GTGTAAGACCCTGTCTAGCACAGTGGCATCGATATGTGATTACGTGTAAG
1 TTGATATGTGATTACGTGTAAGACCCTGTCTAG-ACAGTGGCATCGATATGTGATTACGTGT-A-
81353327 ACCACGTTTGGGACGTTGGCA
63 ACCACGTTTGGGACGTTGGCA
* * *
81353348 TCGATATGTGATTACGTGTAAGACCCTATCCGAGACAGTGGCATCGATATGTGATTACGTGT-AC
1 TTGATATGTGATTACGTGTAAGACCCTGT-CTAGACAGTGGCATCGATATGTGATTACGTGTAAC
81353412 C-CTGTTTGGGACAG-TGGCA
65 CAC-GTTTGGGAC-GTTGGCA
* *
81353431 TTGATATGTGATTACGTGTAAGACGAC-GTCTAAGA-AGTTGGCATTGATATGTGATTAC
1 TTGATATGTGATTACGTGTAAGAC-CCTGTCT-AGACAG-TGGCATCGATATGTGATTAC
81353489 ATATAAGACC
Statistics
Matches: 126, Mismatches: 8, Indels: 16
0.84 0.05 0.11
Matches are distributed among these distances:
82 4 0.03
83 63 0.50
84 2 0.02
85 13 0.10
86 41 0.33
87 3 0.02
ACGTcount: A:0.26, C:0.16, G:0.27, T:0.31
Consensus pattern (83 bp):
TTGATATGTGATTACGTGTAAGACCCTGTCTAGACAGTGGCATCGATATGTGATTACGTGTAACC
ACGTTTGGGACGTTGGCA
Found at i:81353517 original size:126 final size:126
Alignment explanation
Indices: 81353265--81353498 Score: 326
Period size: 126 Copynumber: 1.8 Consensus size: 126
81353255 TAGGATTTTT
81353265 GATATGTGATTAGTGTAAGACCCTGTCTAGCACAGTGGCATCGATATGTGATTACGTGTAAGACC
1 GATATGTGATTAGTGT-A-ACCCTGTCTAGCACAGTGGCATCGATATGTGATTACGTGTAAGACC
* ** * * *
81353330 ACGTTTGGGACGTTGGCATCGATATGTGATTACGTGTAAGACCCTATCCGAGACAGTGGCATC
64 ACGTCTAAGAAGTTGGCATCGATATGTGATTACATATAAGACCCTATCCGAGACAGTGGCATC
* * * * *
81353393 GATATGTGATTACGTGT-ACCCTGTTTGGGACAGTGGCATTGATATGTGATTACGTGTAAGACGA
1 GATATGTGATTA-GTGTAACCCTGTCTAGCACAGTGGCATCGATATGTGATTACGTGTAAGACCA
*
81353457 CGTCTAAGAAGTTGGCATTGATATGTGATTACATATAAGACC
65 CGTCTAAGAAGTTGGCATCGATATGTGATTACATATAAGACC
81353499 ACGTCTGGAA
Statistics
Matches: 93, Mismatches: 12, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
126 77 0.83
128 12 0.13
129 4 0.04
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (126 bp):
GATATGTGATTAGTGTAACCCTGTCTAGCACAGTGGCATCGATATGTGATTACGTGTAAGACCAC
GTCTAAGAAGTTGGCATCGATATGTGATTACATATAAGACCCTATCCGAGACAGTGGCATC
Found at i:81358181 original size:38 final size:36
Alignment explanation
Indices: 81358128--81358224 Score: 110
Period size: 34 Copynumber: 2.7 Consensus size: 36
81358118 CAAAATGGTA
* * *
81358128 TGGGCCTAAGCCCATTTCAGTAACAGTCTAGTATCAGTG
1 TGGGCCTTAGCCCATTACAGTAACA---TAGTATCAATG
*
81358167 T-GGCCTTAGCCCATTACAAT-A-ATAGTATCAATG
1 TGGGCCTTAGCCCATTACAGTAACATAGTATCAATG
81358200 TGGGCCTTAGCCCATTACAGTAACA
1 TGGGCCTTAGCCCATTACAGTAACA
81358225 ATAATAGAAT
Statistics
Matches: 50, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
33 11 0.22
34 18 0.36
35 1 0.02
36 2 0.04
37 1 0.02
38 16 0.32
39 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.28
Consensus pattern (36 bp):
TGGGCCTTAGCCCATTACAGTAACATAGTATCAATG
Found at i:81369257 original size:53 final size:52
Alignment explanation
Indices: 81369084--81369328 Score: 205
Period size: 55 Copynumber: 4.6 Consensus size: 52
81369074 AAGGATGCCG
** *
81369084 TGTAAGACCATGCCAATG-CATGGCAATTGGTAAGGTTTC-TAAGGCAAGAAAATCA
1 TGTAAGACCATGCCAA-GACATGGC-ATTGGTAA-G-TTCATAAGGCAAG-GTACCA
* * * *
81369139 TGTAAGACCATGTCAAGATATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAGTT-C-ATAAGGC-AAGGTACCA
* *
81369194 TGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATAAGGCAAGGCTACCA
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGG-TACCA
* * *
81369247 TGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAAAAGG--A--TACCA
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAG-TTCATAAGGCAAGGTACCA
* ** * *
81369296 CGTAAGACCATGAAAAGTCATGGCAATGGTAAG
1 TGTAAGACCATGCCAAGACATGGCATTGGTAAG
81369329 GTACCTGTGT
Statistics
Matches: 161, Mismatches: 22, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
49 34 0.21
52 7 0.04
53 42 0.26
54 17 0.11
55 58 0.36
56 3 0.02
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.22
Consensus pattern (52 bp):
TGTAAGACCATGCCAAGACATGGCATTGGTAAGTTCATAAGGCAAGGTACCA
Found at i:81369280 original size:108 final size:110
Alignment explanation
Indices: 81369084--81369281 Score: 285
Period size: 108 Copynumber: 1.8 Consensus size: 110
81369074 AAGGATGCCG
* *
81369084 TGTAAGACCATGCCAATGCATGGCAATTGGTAAGGTTTCTAAGGCAAGAAAATCATGTAAGACCA
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGAAAACCATGTAAGACCA
* *
81369149 TGTCAAGATATGGCATTGATAAGTTACTATAAGGCAAAGGTCCCA
66 TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
* ***
81369194 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGA-G-TTCATAAGGCAAGGCTACCATGTAAGACC
1 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTC-TAAGGCAAGAAAACCATGTAAGACC
*
81369256 ATGTCAAGACATGGCAATGGTAAGTT
65 ATGTCAAGACATGGCAATGATAAGTT
81369282 TCAAAAGGAT
Statistics
Matches: 78, Mismatches: 9, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
107 3 0.04
108 45 0.58
109 7 0.09
110 23 0.29
ACGTcount: A:0.34, C:0.17, G:0.25, T:0.24
Consensus pattern (110 bp):
TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGAAAACCATGTAAGACCA
TGTCAAGACATGGCAATGATAAGTTACTATAAGGCAAAGGTCCCA
Found at i:81376751 original size:55 final size:54
Alignment explanation
Indices: 81376674--81376918 Score: 222
Period size: 55 Copynumber: 4.6 Consensus size: 54
81376664 AAGGATACCG
* * *
81376674 TGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGAAAATCA
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAA-GTTTCTAAGGCAAGAAGACCA
* * * * *
81376729 TGTAAGACCATGTCAAGACATGGC-ATTGATAAGTTACTAAAAGGCAA-AGGTCCCA
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCT--AAGGCAAGAAG-ACCA
* * **
81376784 TGTAAGACCATGCCAAGGCATGGC-ATTGGTGAG-TTCATAAGGCAAGGCGACCA
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTC-TAAGGCAAGAAGACCA
* * *
81376837 TGTAAGACCATGTCAAGACATGGCAA-TGGTAAGTTTC-AA---AAGGATACCA
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGCAAGAAGACCA
* *
81376886 TGTAAGACCATGACAAGTCATGGCAA-TGGTAAG
1 TGTAAGACCATGCCAAGACATGGCAATTGGTAAG
81376919 GTACCTGTGT
Statistics
Matches: 160, Mismatches: 23, Indels: 20
0.79 0.11 0.10
Matches are distributed among these distances:
49 39 0.24
52 2 0.01
53 43 0.27
54 15 0.09
55 61 0.38
ACGTcount: A:0.36, C:0.18, G:0.25, T:0.21
Consensus pattern (54 bp):
TGTAAGACCATGCCAAGACATGGCAATTGGTAAGTTTCTAAGGCAAGAAGACCA
Found at i:81376870 original size:108 final size:103
Alignment explanation
Indices: 81376664--81376920 Score: 311
Period size: 108 Copynumber: 2.4 Consensus size: 103
81376654 ATTAGGGTTT
* *
81376664 AAGGATACCGTGTAAGACCATGCCAAGGCATGGCAATTGGTAAGGTTTCTAAGGCAAGAAAATCA
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGC-ATTGGTAAGGTTTCTAAGGCAAGAAAACCA
*
81376729 TGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTAA
65 TGTAAGACCATGTCAAGACATGGCAATGATAAGTTAC-AA
* * **
81376769 AAGGCAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGA-G-TTCATAAGGCAAGGC
1 AAGG---A--TACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGTTTC-TAAGGCAAGAA
* * *
81376832 GACCATGTAAGACCATGTCAAGACATGGCAATGGTAAGTTTCAA
60 AACCATGTAAGACCATGTCAAGACATGGCAATGATAAGTTACAA
* * *
81376876 AAGGATACCATGTAAGACCATGACAAGTCATGGCAATGGTAAGGT
1 AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGT
81376921 ACCTGTGTAT
Statistics
Matches: 129, Mismatches: 15, Indels: 17
0.80 0.09 0.11
Matches are distributed among these distances:
102 32 0.25
103 1 0.01
104 1 0.01
105 4 0.03
107 9 0.07
108 48 0.37
109 7 0.05
110 27 0.21
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.21
Consensus pattern (103 bp):
AAGGATACCATGTAAGACCATGCCAAGGCATGGCATTGGTAAGGTTTCTAAGGCAAGAAAACCAT
GTAAGACCATGTCAAGACATGGCAATGATAAGTTACAA
Found at i:81377131 original size:16 final size:16
Alignment explanation
Indices: 81377110--81377140 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81377100 ATAAATTTGA
81377110 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
81377126 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
81377141 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:81380011 original size:40 final size:40
Alignment explanation
Indices: 81379974--81380198 Score: 280
Period size: 40 Copynumber: 5.7 Consensus size: 40
81379964 GCTACTCGTT
* *
81379974 CAAATGCCTTCGGGTCATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
81380014 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
81380054 CAAATGCCTTCGGGACTTCA-CCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTT-AGCCCGGATTTAGTAACTCGCA
* * *
81380094 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * *
81380133 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
81380174 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
81380199 CATCATTCGA
Statistics
Matches: 163, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
38 3 0.02
39 31 0.19
40 115 0.71
41 14 0.09
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:81380158 original size:119 final size:120
Alignment explanation
Indices: 81379976--81380198 Score: 294
Period size: 119 Copynumber: 1.9 Consensus size: 120
81379966 TACTCGTTCA
*
81379976 AATGCCTTCGGGTCATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
1 AATGCCTTCGGGTCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
* *
81380041 TTAGTAAC-TCGCACAAATGCCTTCGGGACTTCA-CCCGGATTTAGTAACTCGCACC
66 ATAGTAACTTAGCACAAA-GCCTTCGGGACTT-AGCCCGGATTTAGTAACTCGCACC
* * **
81380096 AATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 AATGCCTTCGGGTCATAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
81380158 ATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
64 ATATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
81380199 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 9
0.83 0.08 0.08
Matches are distributed among these distances:
118 5 0.06
119 65 0.72
120 20 0.22
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (120 bp):
AATGCCTTCGGGTCATAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGAT
ATAGTAACTTAGCACAAAGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACC
Found at i:81381435 original size:56 final size:56
Alignment explanation
Indices: 81381375--81381606 Score: 455
Period size: 56 Copynumber: 4.1 Consensus size: 56
81381365 TATTAGTTTA
*
81381375 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
81381431 TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
81381487 TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
81381543 TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
81381599 TTGCCCAT
1 TTGCCCAT
81381607 CATCCCTTGT
Statistics
Matches: 175, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 175 1.00
ACGTcount: A:0.22, C:0.22, G:0.10, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTGTTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:81389113 original size:56 final size:56
Alignment explanation
Indices: 81389022--81389143 Score: 174
Period size: 55 Copynumber: 2.2 Consensus size: 56
81389012 GAGATTGGCG
* * *
81389022 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAG-TTGATTATATAGCA
* *
81389079 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAGTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
*
81389134 CTGAGTGTGC
1 CTAAGTGTGC
81389144 AGACTTAATA
Statistics
Matches: 59, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
55 22 0.37
56 22 0.37
57 15 0.25
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (56 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGTTGATTATATAGCA
Found at i:81389131 original size:27 final size:28
Alignment explanation
Indices: 81389022--81389143 Score: 174
Period size: 28 Copynumber: 4.4 Consensus size: 28
81389012 GAGATTGGCG
* * * *
81389022 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
81389051 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
81389079 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
81389107 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
81389134 CTGAGTGTGC
1 CTAAGTGTGC
81389144 AGACTTAATA
Statistics
Matches: 86, Mismatches: 7, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 23 0.27
28 48 0.56
29 15 0.17
ACGTcount: A:0.26, C:0.12, G:0.28, T:0.34
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:81389155 original size:27 final size:27
Alignment explanation
Indices: 81389047--81389157 Score: 116
Period size: 28 Copynumber: 4.0 Consensus size: 27
81389037 TAAATTGTAC
* * *
81389047 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
81389075 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
81389103 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
81389130 AGCACTGAGTGTGCAGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
81389157 A
1 A
81389158 CTTTTGAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 3
0.91 0.06 0.04
Matches are distributed among these distances:
27 30 0.39
28 47 0.61
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:81401481 original size:30 final size:26
Alignment explanation
Indices: 81401425--81401474 Score: 100
Period size: 26 Copynumber: 1.9 Consensus size: 26
81401415 TTAATCACAA
81401425 TAGCATGCATGTGTTAGAATAATTCT
1 TAGCATGCATGTGTTAGAATAATTCT
81401451 TAGCATGCATGTGTTAGAATAATT
1 TAGCATGCATGTGTTAGAATAATT
81401475 TTTTCTTCTT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 24 1.00
ACGTcount: A:0.32, C:0.10, G:0.20, T:0.38
Consensus pattern (26 bp):
TAGCATGCATGTGTTAGAATAATTCT
Found at i:81416815 original size:20 final size:20
Alignment explanation
Indices: 81416771--81416831 Score: 58
Period size: 20 Copynumber: 3.1 Consensus size: 20
81416761 GTAAAAATAT
81416771 AAAAAGAAAA-ACAAAG-GA-
1 AAAAAGAAAAGA-AAAGAGAC
*
81416789 AATAAAGAACAAGGAAAGA-AC
1 AA-AAAGAA-AAGAAAAGAGAC
81416810 AAAAAGAAAAGAAAAGAGAC
1 AAAAAGAAAAGAAAAGAGAC
81416830 AA
1 AA
81416832 TAGAATTAGT
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
18 2 0.06
19 14 0.40
20 17 0.49
21 2 0.06
ACGTcount: A:0.74, C:0.07, G:0.18, T:0.02
Consensus pattern (20 bp):
AAAAAGAAAAGAAAAGAGAC
Found at i:81417299 original size:38 final size:37
Alignment explanation
Indices: 81417248--81417323 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 37
81417238 AAGTAATATT
*
81417248 TATAAACCAAGAAAAAATAGTTATTATACTACTACTC
1 TATAAACCAAGAAAAAATAGTCATTATACTACTACTC
* * *
81417285 NTATAAACCAAGAAAAATTAGTCATTTTACTAGTACTC
1 -TATAAACCAAGAAAAAATAGTCATTATACTACTACTC
81417323 T
1 T
81417324 TTCCCAATTA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
37 1 0.03
38 33 0.97
ACGTcount: A:0.45, C:0.16, G:0.07, T:0.32
Consensus pattern (37 bp):
TATAAACCAAGAAAAAATAGTCATTATACTACTACTC
Found at i:81423557 original size:49 final size:50
Alignment explanation
Indices: 81423440--81423615 Score: 186
Period size: 49 Copynumber: 3.6 Consensus size: 50
81423430 TAATGCTGAA
* **
81423440 GCCATGTCCCAGACATGGTCTTACACTGGCTCATC-C--AT-CAAGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGACT-ATCACAAATCCGGGCCAAT
* *
81423487 GCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAAT-TGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCG-GGCCAAT
* * * * *
81423536 GCCATGTGCCAAACATGGTCTTACACT-ACCTCTCACATATCCGTGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATCCGGGCCAAT
81423586 GCCATGTCCCAGACATGGTCTTACACTGAC
1 GCCATGTCCCAGACATGGTCTTACACTGAC
81423616 ACATCTCGTA
Statistics
Matches: 107, Mismatches: 14, Indels: 13
0.80 0.10 0.10
Matches are distributed among these distances:
46 3 0.03
47 30 0.28
48 3 0.03
49 35 0.33
50 34 0.32
51 2 0.02
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.24
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATCCGGGCCAAT
Found at i:81423677 original size:46 final size:49
Alignment explanation
Indices: 81423440--81423797 Score: 279
Period size: 46 Copynumber: 7.6 Consensus size: 49
81423430 TAATGCTGAA
* * *
81423440 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCA--TC-AAGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTC-TACATCTCGATGCCGAT
* * * *
81423487 GCCATGTCCCAGACATGGTCTTACACTGACTATCAAAAT-T-GAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGC--TCTACATCTCGATGCCGAT
* * ** * *
81423536 GCCATGTGCCAAACATGGTCTTACACTACCTCTCACATATCCG-TGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCT-ACATCT-CGATGCCGAT
*
81423586 GCCATGTCCCAGACATGGTCTTACACT-G-AC-ACATCTCG-TAGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGAT-GCCGAT
* *
81423632 G-CATGTTCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGATGCCGAT
* * * * * *
81423678 -TCATGTCCTAGACAT-GTCTTACACTAGCTCT-CTTCTCAATGCCAAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGATGCCGAT
* * *
81423724 GCCATGTCCCAAACATGGTCTTACACTGGCTCT-CATAAT-GTTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCTACAT-CTCGATGCCGAT
*
81423772 G-CATGTCCCAAACAT-GTCTTACACTG
1 GCCATGTCCCAGACATGGTCTTACACTG
81423798 ACACACAAAT
Statistics
Matches: 254, Mismatches: 39, Indels: 37
0.77 0.12 0.11
Matches are distributed among these distances:
44 10 0.04
45 17 0.07
46 72 0.28
47 58 0.23
48 29 0.11
49 37 0.15
50 30 0.12
51 1 0.00
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCTACATCTCGATGCCGAT
Found at i:81423788 original size:140 final size:142
Alignment explanation
Indices: 81423440--81423799 Score: 391
Period size: 140 Copynumber: 2.5 Consensus size: 142
81423430 TAATGCTGAA
*
81423440 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCCATCAA--GCCAATGCCATGTCCCAGACAT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCAT-CAT-AAGTGCCGATG-CATGTCCCAGACAT
81423503 GGTCTTACACTGACTATCAAAATTGAGGCCGATGCCATGTGCCAAACATGGTCTTACACTACCTC
63 -GTCTTACACTGACTAT-AAAATTGAGGCCGATGCCATGTGCCAAACATGGTCTTACACTACCTC
**
81423568 TCACATATCCGTGCCAAT
126 T-ACATATCAATGCCAAT
* * * *
81423586 GCCATGTCCCAGACATGGTCTTACACTGACACATC-T-CGTAGCCGATGCATGTTCCAGACATGT
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAAGT-GCCGATGCATGTCCCAGACATGT
* * * * *
81423649 CTTACACTGGCT-T-ACATCTCGAGGCCGAT-TCATGT-CCTAGACAT-GTCTTACACTAGCTCT
65 CTTACACTGACTATAAAAT-T-GAGGCCGATGCCATGTGCC-AAACATGGTCTTACACTACCTCT
* *
81423709 -CTTCTCAATGCCAAT
127 ACATATCAATGCCAAT
* *
81423724 GCCATGTCCCAAACATGGTCTTACACTGGCTC-TCATAATGTTGCCGATGCATGTCCCAAACATG
1 GCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAA-G-TGCCGATGCATGTCCCAGACATG
81423788 TCTTACACTGAC
64 TCTTACACTGAC
81423800 ACACAAATAA
Statistics
Matches: 183, Mismatches: 21, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
137 2 0.01
138 41 0.22
140 52 0.28
141 12 0.07
142 10 0.05
143 13 0.07
144 14 0.08
145 7 0.04
146 32 0.17
ACGTcount: A:0.25, C:0.31, G:0.17, T:0.27
Consensus pattern (142 bp):
GCCATGTCCCAGACATGGTCTTACACTGGCTCATCATAAGTGCCGATGCATGTCCCAGACATGTC
TTACACTGACTATAAAATTGAGGCCGATGCCATGTGCCAAACATGGTCTTACACTACCTCTACAT
ATCAATGCCAAT
Found at i:81430671 original size:46 final size:47
Alignment explanation
Indices: 81430530--81430693 Score: 201
Period size: 46 Copynumber: 3.5 Consensus size: 47
81430520 GTTGGCTAGC
* **
81430530 GTAAGACATGTCTGGGACATGCATTGGCCAT-ATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATTGGCCTTGAACATGAGAGCCAGT
* * * * *
81430576 GTAAGATCATATCTAGGACATGGCATTGGCATTG-AGATGAGAGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATTGGCCTTGAACATGAGAGCCAGT
81430624 GTAAGACATGTCTGGGACATGCATTGGCCTTGAAACAT-A-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATTGGCCTTG-AACATGAGAGCCAGT
81430670 GTAAGACATGTCTGGGACATGCAT
1 GTAAGACATGTCTGGGACATGCAT
81430694 CGGCTACGAG
Statistics
Matches: 101, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
46 47 0.47
47 25 0.25
48 29 0.29
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (47 bp):
GTAAGACATGTCTGGGACATGCATTGGCCTTGAACATGAGAGCCAGT
Found at i:81430716 original size:46 final size:46
Alignment explanation
Indices: 81430530--81430784 Score: 207
Period size: 47 Copynumber: 5.5 Consensus size: 46
81430520 GTTGGCTAGC
* *
81430530 GTAAGACATGTCTGGGACATGCATTGGCCAT-ATTATGAGAGCCAGT
1 GTAAGACATGTCTGGGACATGCATTGGCTATGA-GATGAGAGCCAGT
* * *
81430576 GTAAGATCATATCTAGGACATGGCATTGGC-ATTGAGATGAGAGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATTGGCTA-TGAGATGAGAGCCAGT
*
81430624 GTAAGACATGTCTGGGACATGCATTGGCCT-TGAAACAT-A-AGCCAGT
1 GTAAGACATGTCTGGGACATGCATTGG-CTATG--AGATGAGAGCCAGT
* * * *
81430670 GTAAGACATGTCTGGGACATGCATCGGCTACGAGATGATAGTCAGT
1 GTAAGACATGTCTGGGACATGCATTGGCTATGAGATGAGAGCCAGT
* * **** * *
81430716 GTTAGACCATGTCTGGAACATGGCATCAAAT-TGAGATGTGAGCTAGT
1 GTAAGA-CATGTCTGGGACAT-GCATTGGCTATGAGATGAGAGCCAGT
*
81430763 GTAAGACCATGTCTAGGACATG
1 GTAAGA-CATGTCTGGGACATG
81430785 ACATCGGTGC
Statistics
Matches: 171, Mismatches: 25, Indels: 26
0.77 0.11 0.12
Matches are distributed among these distances:
44 3 0.02
45 3 0.02
46 60 0.35
47 69 0.40
48 35 0.20
49 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (46 bp):
GTAAGACATGTCTGGGACATGCATTGGCTATGAGATGAGAGCCAGT
Found at i:81430774 original size:140 final size:140
Alignment explanation
Indices: 81430530--81430784 Score: 336
Period size: 140 Copynumber: 1.8 Consensus size: 140
81430520 GTTGGCTAGC
* * * *
81430530 GTAAGACATGTCTGGGACATGCATTGGCCATATTATGAGAGCCAGTGTAAGATCATATCTAGGAC
1 GTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATATCTAGGAC
*** *
81430595 ATGGCATTGGCATTGAGATGAGAGCTAGTGTAAGACATGTCTGGGACATGCATTGGCCTTGAAAC
66 ATGGCATTCAAATTGAGATGAGAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTTGAAAC
81430660 ATAAGCCAGT
131 ATAAGCCAGT
* * * * *
81430670 GTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTTAGACCATGTCT-GGA
1 GTAAGACATGTCTGGGACATGCATCGGCCA-GATGATGAGAGCCAGTGTAAGACCATATCTAGG-
*
81430733 ACATGGCA-TCAAATTGAGATGTGAGCTAGTGTAAGACCATGTCTAGGACATG
64 ACATGGCATTCAAATTGAGATGAGAGCTAGTGTAAGA-CATGTCTAGGACATG
81430785 ACATCGGTGC
Statistics
Matches: 98, Mismatches: 14, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
139 26 0.27
140 71 0.72
141 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.25
Consensus pattern (140 bp):
GTAAGACATGTCTGGGACATGCATCGGCCAGATGATGAGAGCCAGTGTAAGACCATATCTAGGAC
ATGGCATTCAAATTGAGATGAGAGCTAGTGTAAGACATGTCTAGGACATGCATTGGCCTTGAAAC
ATAAGCCAGT
Found at i:81433015 original size:13 final size:13
Alignment explanation
Indices: 81432997--81433024 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
81432987 CCTGACACAC
81432997 GCCCATGCCTATT
1 GCCCATGCCTATT
81433010 GCCCATGCCTATT
1 GCCCATGCCTATT
81433023 GC
1 GC
81433025 TCGTCTCCGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.14, C:0.39, G:0.18, T:0.29
Consensus pattern (13 bp):
GCCCATGCCTATT
Found at i:81434203 original size:48 final size:46
Alignment explanation
Indices: 81434045--81434360 Score: 202
Period size: 46 Copynumber: 6.7 Consensus size: 46
81434035 GTATAATGCT
* *
81434045 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGAAATCG-AGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC-A-C-ATATCGTA-GCC
** * * * *
81434094 GATGCCATGTTTCAAACATGGTCTTACGCTAGCTCTTACATATC-CATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-G-AC--ACATATCGTA-GCC
* *
81434144 GATACCATGTCCCAGATATGGTCTTACACTGACACCACTATACGTA-CC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACA-CA-TAT-CGTAGCC
* * * *
81434192 GATGCCATGTCCTAGACATGGTCTTATATTGACACATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACATATCGTAGCC
* *
81434238 GATG-CATGTCCCAGACAT-GTCTTACACTGGATTACATCTCG-AGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GA-CACATATCGTA-GCC
* * * * *
81434284 GATG-CATGTCCCAAACAT-GTCTTACACT-AGCTTTCATCTC-AATGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-C--ACATATCGTA-GCC
81434330 GATGCCATGTCCCAGACATGGTCTTACACTG
1 GATGCCATGTCCCAGACATGGTCTTACACTG
81434361 GCTCTCGCAA
Statistics
Matches: 216, Mismatches: 33, Indels: 36
0.76 0.12 0.13
Matches are distributed among these distances:
44 9 0.04
45 20 0.09
46 60 0.28
47 17 0.08
48 45 0.21
49 28 0.13
50 33 0.15
51 2 0.01
52 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (46 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACATATCGTAGCC
Found at i:81434276 original size:46 final size:46
Alignment explanation
Indices: 81434186--81434407 Score: 179
Period size: 46 Copynumber: 4.8 Consensus size: 46
81434176 CACCACTATA
* * * *
81434186 CGTA-CCGATGCCATGTCCTAGACATGGTCTTATA-TTGA-CACATCT
1 CGTAGCCGATG-CATGTCCCAGACAT-GTCTTACACTGGATTACATCT
81434231 CGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGATTACATCT
1 CGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGATTACATCT
* * * *
81434277 CG-AGGCCGATGCATGTCCCAAACATGTCTTACACTAGCTTTCATCT
1 CGTA-GCCGATGCATGTCCCAGACATGTCTTACACTGGATTACATCT
* * * * *
81434323 C-AATGCTGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGCA-AT
1 CGTA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGAT-T-ACATCT
* * *
81434372 -GTGGCCGATGCATGTCCCAGACTTGTCTTTCACTGG
1 CGTAGCCGATGCATGTCCCAGACATGTCTTACACTGG
81434408 CACACAAATA
Statistics
Matches: 148, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
44 7 0.05
45 21 0.14
46 71 0.48
47 26 0.18
48 19 0.13
49 2 0.01
50 2 0.01
ACGTcount: A:0.22, C:0.29, G:0.20, T:0.29
Consensus pattern (46 bp):
CGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGATTACATCT
Found at i:81434382 original size:48 final size:47
Alignment explanation
Indices: 81434045--81434408 Score: 173
Period size: 46 Copynumber: 7.7 Consensus size: 47
81434035 GTATAATGCT
* * * *
81434045 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCGA-AATCGAGGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTC-ACAAT-G-TGCC
** * * * * *
81434094 GATGCCATGTTTCAAACATGGTCTTACGCTAGCTCTTACATATCCATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACA-AT--GTGCC
* * * * * *
81434144 GATACCATGTCCCAGATATGGTCTTACACTGACAC-CACTATACGTACC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAC-A-ATGTGCC
* * * * * *
81434192 GATGCCATGTCCTAGACATGGTCTTATATTGACACATCTC---GTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTC-TCACAATGT-GCC
* * *
81434238 GATG-CATGTCCCAGACAT-GTCTTACACTGGAT-T-ACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACA-AT-G-TGCC
* * * *
81434284 GATG-CATGTCCCAAACAT-GTCTTACACTAGCTTTCATCTCAA--TGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC--TC-TCACAATGTGCC
*
81434330 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCGCAATGTGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATGT-GCC
* *
81434378 GATG-CATGTCCCAGAC-TTGTCTTTCACTGGC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGC
81434409 ACACAAATAA
Statistics
Matches: 240, Mismatches: 52, Indels: 49
0.70 0.15 0.14
Matches are distributed among these distances:
41 1 0.00
42 1 0.00
44 9 0.04
45 20 0.08
46 59 0.25
47 26 0.11
48 53 0.22
49 32 0.13
50 36 0.15
51 3 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACAATGTGCC
Found at i:81435881 original size:25 final size:25
Alignment explanation
Indices: 81435845--81435907 Score: 67
Period size: 25 Copynumber: 2.5 Consensus size: 25
81435835 TATCATTTAT
*
81435845 GCTCT-TTCGAGC-CATGATCAGTAA
1 GCTCTATT-GAGCTCATGAACAGTAA
* *
81435869 GCTCCTCTTGAGCTGATGAACAGTAA
1 GCT-CTATTGAGCTCATGAACAGTAA
81435895 GCTCTATTGAGCT
1 GCTCTATTGAGCT
81435908 AAGATGGTAA
Statistics
Matches: 33, Mismatches: 3, Indels: 5
0.80 0.07 0.12
Matches are distributed among these distances:
24 3 0.09
25 15 0.45
26 15 0.45
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (25 bp):
GCTCTATTGAGCTCATGAACAGTAA
Found at i:81435892 original size:26 final size:25
Alignment explanation
Indices: 81435858--81435907 Score: 73
Period size: 26 Copynumber: 2.0 Consensus size: 25
81435848 CTTTCGAGCC
* *
81435858 ATGATCAGTAAGCTCCTCTTGAGCTG
1 ATGAACAGTAAGCT-CTATTGAGCTG
81435884 ATGAACAGTAAGCTCTATTGAGCT
1 ATGAACAGTAAGCTCTATTGAGCT
81435908 AAGATGGTAA
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
25 9 0.41
26 13 0.59
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (25 bp):
ATGAACAGTAAGCTCTATTGAGCTG
Found at i:81438836 original size:40 final size:40
Alignment explanation
Indices: 81438781--81438861 Score: 162
Period size: 40 Copynumber: 2.0 Consensus size: 40
81438771 GAAAGAGAGT
81438781 AAGCATAAAGCTTAGTAAGTTGCATATAAATATATATACA
1 AAGCATAAAGCTTAGTAAGTTGCATATAAATATATATACA
81438821 AAGCATAAAGCTTAGTAAGTTGCATATAAATATATATACA
1 AAGCATAAAGCTTAGTAAGTTGCATATAAATATATATACA
81438861 A
1 A
81438862 CGACAACTTC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 41 1.00
ACGTcount: A:0.48, C:0.10, G:0.12, T:0.30
Consensus pattern (40 bp):
AAGCATAAAGCTTAGTAAGTTGCATATAAATATATATACA
Found at i:81439354 original size:47 final size:45
Alignment explanation
Indices: 81439155--81439372 Score: 153
Period size: 47 Copynumber: 4.7 Consensus size: 45
81439145 TCCATCGAGG
* *
81439155 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCA--TGTATA
1 CCGATG-CATGTCCCAGACATGGTCTTACACTGGCACTCACCT-TA-A
* * * ** *
81439201 CGTGCTGATGCATGTCCCAAACA-CGTCTTACACTAGCACGAAACTTAA
1 C---C-GATGCATGTCCCAGACATGGTCTTACACTGGCACTCACCTTAA
*
81439249 CCGATGCATGTCCCAGACA-CGTCTTACACTGGCTAACATCA--TTGAA
1 CCGATGCATGTCCCAGACATGGTCTTACACTGGC--AC-TCACCTT-AA
*
81439295 GCCGATGTATGTCCCAGACAT-GTCTTACACTGGCACTCACCTCTACA
1 -CCGATGCATGTCCCAGACATGGTCTTACACTGGCACTCACCT-TA-A
*
81439342 CCGATGCCATGTCCCAGACGTGGTCTTACAC
1 CCGATG-CATGTCCCAGACATGGTCTTACAC
81439373 GGGCCATCAT
Statistics
Matches: 142, Mismatches: 12, Indels: 34
0.76 0.06 0.18
Matches are distributed among these distances:
44 32 0.23
45 5 0.04
46 13 0.09
47 46 0.32
48 26 0.18
49 15 0.11
50 5 0.04
ACGTcount: A:0.26, C:0.32, G:0.18, T:0.25
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACATGGTCTTACACTGGCACTCACCTTAA
Found at i:81439401 original size:94 final size:93
Alignment explanation
Indices: 81439155--81439469 Score: 325
Period size: 94 Copynumber: 3.4 Consensus size: 93
81439145 TCCATCGAGG
* *
81439155 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTC-TCATGTATACGTGCTGATGCATGTCCC
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-CATCATG-ATGCG-GCTGATGCATGTCCC
* **
81439219 AAACACGTCTTACACTAGCACGAAACT-TAA
63 AGACACGTCTTACACTAGCACTCAACTCTAA
* * * * ** * *
81439249 CCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTAACATCATTGAAGCCGATGTATGTCCCAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCCATCATGA-TGCGGCTGATGCATGTCCCAG
* * *
81439312 ACATGTCTTACACTGGCACTCACCTCTACA
65 ACACGTCTTACACTAGCACTCAACTCTA-A
* * * *
81439342 CCGATGCCATGTCCCAGACGTGGTCTTACACGGGCCATCATGATGCGGCTAATGCATGTCCTAGA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCCATCATGATGCGGCTGATGCATGTCCCAGA
* * *
81439407 CACATCTTACACTAGCCCTCATCTC-AA
66 CACGTCTTACACTAGCACTCAACTCTAA
*
81439434 TCCGATGCCATGTCCCAGACATGGTCTTATACTGGC
1 -CCGATGCCATGTCCCAGACATGGTCTTACACTGGC
81439470 TCTCACATAA
Statistics
Matches: 178, Mismatches: 36, Indels: 15
0.78 0.16 0.07
Matches are distributed among these distances:
91 35 0.20
92 19 0.11
93 53 0.30
94 54 0.30
95 17 0.10
ACGTcount: A:0.25, C:0.31, G:0.18, T:0.25
Consensus pattern (93 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCCATCATGATGCGGCTGATGCATGTCCCAGA
CACGTCTTACACTAGCACTCAACTCTAA
Found at i:81440615 original size:9 final size:9
Alignment explanation
Indices: 81440601--81440625 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
81440591 ATATAACCTC
81440601 ATAAAAATA
1 ATAAAAATA
81440610 ATAAAAATA
1 ATAAAAATA
81440619 ATAAAAA
1 ATAAAAA
81440626 CCCCTTAGGG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (9 bp):
ATAAAAATA
Found at i:81446098 original size:47 final size:47
Alignment explanation
Indices: 81446039--81446570 Score: 866
Period size: 47 Copynumber: 11.3 Consensus size: 47
81446029 CAACACAGTT
81446039 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
81446086 TATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
81446133 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTA
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
81446180 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
81446227 TATATATGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
81446274 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
81446321 TATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * *
81446368 CATATGTGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
81446415 TATATATGTAATAAGGCCTAATGGTCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
*
81446462 TATAAATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* * * * * * *
81446509 TATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTG
1 TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
* *
81446556 CATAAATGTGATAAG
1 TATATATGTGATAAG
81446571 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 31, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 454 1.00
ACGTcount: A:0.33, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
TATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG
Found at i:81446745 original size:37 final size:37
Alignment explanation
Indices: 81446693--81446767 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 37
81446683 GCTCTAAAGG
* *
81446693 CCCGATGACTACGTGTGG-GACTTTTGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGA-TTATGTCCGGGTAAGA
*
81446730 CCCGATAACTTCGTGTGGAGATTATGTCCGGGTAAGA
1 CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
81446767 C
1 C
81446768 TTCGTAATAA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
37 32 0.94
38 2 0.06
ACGTcount: A:0.21, C:0.21, G:0.31, T:0.27
Consensus pattern (37 bp):
CCCGATAACTACGTGTGGAGATTATGTCCGGGTAAGA
Found at i:81451136 original size:47 final size:44
Alignment explanation
Indices: 81450988--81451152 Score: 145
Period size: 47 Copynumber: 3.6 Consensus size: 44
81450978 TATACGTGCT
* * * * **
81450988 GATGGATGTCGCAGACATGTCTTACAATAGCACGAAACT-TAGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCAC-TCACTCTAGCC
* *
81451032 GATGCATGTCCCAGACACGTCTTACACTGGCTAACATCA-TCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC--AC-TCACTCTA-GCC
*
81451079 GATGCCTGTCCCAGACATGTCTTACACTGGCACTCACCTCTACGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCACTCA-CTCTA-GCC
*
81451125 GATGCTATGTCCCAGACGTGGTCTTACA
1 GATGC-ATGTCCCAGACAT-GTCTTACA
81451153 TGGGCTATCA
Statistics
Matches: 98, Mismatches: 15, Indels: 12
0.78 0.12 0.10
Matches are distributed among these distances:
44 29 0.30
45 3 0.03
46 15 0.15
47 43 0.44
48 8 0.08
ACGTcount: A:0.25, C:0.30, G:0.21, T:0.24
Consensus pattern (44 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCACTCACTCTAGCC
Found at i:81452754 original size:23 final size:23
Alignment explanation
Indices: 81452724--81452770 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
81452714 GTCATGTCCC
81452724 AGACAGGTCTTACACTAGCTTGT
1 AGACAGGTCTTACACTAGCTTGT
81452747 AGACAGGTCTTACACTAGCTTGT
1 AGACAGGTCTTACACTAGCTTGT
81452770 A
1 A
81452771 TATCCCGAGG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AGACAGGTCTTACACTAGCTTGT
Found at i:81465812 original size:17 final size:17
Alignment explanation
Indices: 81465790--81465824 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
81465780 TTTTCCGACA
81465790 TAGTATCGTATCTTGGG
1 TAGTATCGTATCTTGGG
81465807 TAGTATCGTATCTTGGG
1 TAGTATCGTATCTTGGG
81465824 T
1 T
81465825 TTCTTTATTC
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.17, C:0.11, G:0.29, T:0.43
Consensus pattern (17 bp):
TAGTATCGTATCTTGGG
Found at i:81465844 original size:15 final size:15
Alignment explanation
Indices: 81465824--81465888 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
81465814 GTATCTTGGG
81465824 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
81465839 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
81465854 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
81465869 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
81465883 TTTCTT
1 TTTCTT
81465889 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:81465856 original size:30 final size:31
Alignment explanation
Indices: 81465820--81465888 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
81465810 TATCGTATCT
81465820 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
81465850 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
81465880 -GGTTTTCTT
1 TGGGTTTCTT
81465889 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:81468529 original size:17 final size:19
Alignment explanation
Indices: 81468496--81468531 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
81468486 TGGAGTTTGG
81468496 GAGAAGAATAAAGAAAGGA
1 GAGAAGAATAAAGAAAGGA
81468515 GAGAAGAA-AAA-AAAGGA
1 GAGAAGAATAAAGAAAGGA
81468532 AAAACAAAAG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 6 0.35
18 3 0.18
19 8 0.47
ACGTcount: A:0.67, C:0.00, G:0.31, T:0.03
Consensus pattern (19 bp):
GAGAAGAATAAAGAAAGGA
Found at i:81468625 original size:22 final size:23
Alignment explanation
Indices: 81468584--81468640 Score: 64
Period size: 22 Copynumber: 2.5 Consensus size: 23
81468574 GAGAGAGCAT
** *
81468584 GAAAAAATTGAAGGGGAGAA-AA
1 GAAAAAATAAAAGGGAAGAAGAA
81468606 -AAAATAATAAAAGGGAAGAAGAA
1 GAAAA-AATAAAAGGGAAGAAGAA
81468629 GAAAAAATAAAA
1 GAAAAAATAAAA
81468641 AATATTTTTT
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
21 4 0.14
22 12 0.41
23 9 0.31
24 4 0.14
ACGTcount: A:0.68, C:0.00, G:0.23, T:0.09
Consensus pattern (23 bp):
GAAAAAATAAAAGGGAAGAAGAA
Found at i:81469078 original size:17 final size:19
Alignment explanation
Indices: 81469056--81469090 Score: 56
Period size: 17 Copynumber: 1.9 Consensus size: 19
81469046 ATAAAATAGT
81469056 AACAAAA-TTA-ATAATAA
1 AACAAAAGTTATATAATAA
81469073 AACAAAAGTTATATAATA
1 AACAAAAGTTATATAATA
81469091 TCCAAATAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 7 0.44
18 3 0.19
19 6 0.38
ACGTcount: A:0.66, C:0.06, G:0.03, T:0.26
Consensus pattern (19 bp):
AACAAAAGTTATATAATAA
Found at i:81473298 original size:129 final size:129
Alignment explanation
Indices: 81473067--81473323 Score: 338
Period size: 129 Copynumber: 2.0 Consensus size: 129
81473057 TCTACTGTCT
* * *
81473067 GGTGAATGCCCAAACAATGCCTGGTATACCAAAGCAACCCCCCCATTGACATCCTGTTTTTTTTC
1 GGTGAATGCCCAAACAATGCCTGCTATACCAAAGCAACCCCCCCATTGACATCCTCTTTTTTATC
* * * *
81473132 GATTCCTTTAACCTGACACTCAGAGAAGCCATCTTGAATGCAGAC-TGAAGAATCTCTCCCATCA
66 AATTCCCTTAACCTGACACTCAGAGAAACCATCTTGAACGCAG-CTTGAAGAATCTCTCCCATCA
* * ** *
81473196 GGTGAATGTCCAAACAATGCCTCGCT-TTCCAAAGCAATGCCTCCATTGACATCCTCTTTTTTAT
1 GGTGAATGCCCAAACAATGCCT-GCTATACCAAAGCAACCCCCCCATTGACATCCTCTTTTTTAT
* * * *
81473260 CAATTCCCTTCACCTGACACTCGGAGAAACCATTTTGAACGCAGCTTGAAGTATCTCTCCCATC
65 CAATTCCCTTAACCTGACACTCAGAGAAACCATCTTGAACGCAGCTTGAAGAATCTCTCCCATC
81473324 TGATCGTTGA
Statistics
Matches: 110, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
128 1 0.01
129 107 0.97
130 2 0.02
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (129 bp):
GGTGAATGCCCAAACAATGCCTGCTATACCAAAGCAACCCCCCCATTGACATCCTCTTTTTTATC
AATTCCCTTAACCTGACACTCAGAGAAACCATCTTGAACGCAGCTTGAAGAATCTCTCCCATCA
Found at i:81474663 original size:22 final size:21
Alignment explanation
Indices: 81474638--81474686 Score: 57
Period size: 19 Copynumber: 2.4 Consensus size: 21
81474628 TTCTCCTGAG
*
81474638 CTTTTTCTCTCGTTCTTTTGTT
1 CTTTTTCTCTC-TCCTTTTGTT
81474660 C-TTTTC-CTCTCCTTTTGTT
1 CTTTTTCTCTCTCCTTTTGTT
*
81474679 CTTCTTCT
1 CTTTTTCT
81474687 TCACGCTTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 5
0.77 0.07 0.17
Matches are distributed among these distances:
19 10 0.43
20 7 0.30
21 5 0.22
22 1 0.04
ACGTcount: A:0.00, C:0.29, G:0.06, T:0.65
Consensus pattern (21 bp):
CTTTTTCTCTCTCCTTTTGTT
Found at i:81481395 original size:162 final size:161
Alignment explanation
Indices: 81481178--81481480 Score: 452
Period size: 162 Copynumber: 1.9 Consensus size: 161
81481168 ATAAATTTAA
* *
81481178 ATTTTTTTTAATGTAATTGCTATGGGTTCAAATCTCATAATACATATATTTTTATTTTTTAATTA
1 ATTTTTTTCAATGTAATTGCTATAGGTTCAAATCTCATAATACATATATTTTTATTTTTTAATTA
* *
81481243 AAGTAACTAAAGTACTC-TCGAATAATATAACTT-ATTTTAAATACGAAAAGTCTTTTTTTGTAA
66 AAGTAACTAAAGTAC-CATCGAATAATATAA-TTCATTTTAAATACG-AAAG-ATTTTTTTATAA
*
81481306 ATTCGTAATTGAGTTGGTGCCTAATTAACTCGTAT
127 ATTCATAATTGAGTTGGTGCCTAATTAACTCGTAT
*
81481341 ATTTTTTTCAATGTAATTGAC-ATAGGTTCAAAT-TTATAATACATATATTTTTATTTTTTAATT
1 ATTTTTTTCAATGTAATTG-CTATAGGTTCAAATCTCATAATACATATATTTTTATTTTTTAATT
* *
81481404 AAATTAACTAAAGTACCATTGAATAATATAATTCATTTTAAATACGAAAGATTTTTTTATAAATT
65 AAAGTAACTAAAGTACCATCGAATAATATAATTCATTTTAAATACGAAAGATTTTTTTATAAATT
*
81481469 TATAATTGAGTT
130 CATAATTGAGTT
81481481 AACGTCTAAT
Statistics
Matches: 128, Mismatches: 9, Indels: 9
0.88 0.06 0.06
Matches are distributed among these distances:
160 23 0.18
161 7 0.05
162 68 0.53
163 29 0.23
164 1 0.01
ACGTcount: A:0.36, C:0.09, G:0.09, T:0.46
Consensus pattern (161 bp):
ATTTTTTTCAATGTAATTGCTATAGGTTCAAATCTCATAATACATATATTTTTATTTTTTAATTA
AAGTAACTAAAGTACCATCGAATAATATAATTCATTTTAAATACGAAAGATTTTTTTATAAATTC
ATAATTGAGTTGGTGCCTAATTAACTCGTAT
Found at i:81481621 original size:19 final size:19
Alignment explanation
Indices: 81481599--81481638 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
81481589 AATTTCAAAT
*
81481599 AATAAAAATATAATAATAA
1 AATAAAAATAGAATAATAA
*
81481618 AATAAAAATCGAATAATAA
1 AATAAAAATAGAATAATAA
81481637 AA
1 AA
81481639 ATTGAGCATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.72, C:0.03, G:0.03, T:0.23
Consensus pattern (19 bp):
AATAAAAATAGAATAATAA
Found at i:81481944 original size:28 final size:27
Alignment explanation
Indices: 81481895--81481949 Score: 74
Period size: 28 Copynumber: 2.0 Consensus size: 27
81481885 ATAATGTACC
* *
81481895 TAAAATTATTAATAATATTATTTAAAT
1 TAAAATTATTAATAATAATATTCAAAT
*
81481922 TAAAATATATTAATATTAATATTCAAAT
1 TAAAAT-TATTAATAATAATATTCAAAT
81481950 CATGATAAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
27 6 0.25
28 18 0.75
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (27 bp):
TAAAATTATTAATAATAATATTCAAAT
Found at i:81482114 original size:24 final size:23
Alignment explanation
Indices: 81482065--81482114 Score: 55
Period size: 24 Copynumber: 2.1 Consensus size: 23
81482055 ATCAATTTTT
* * * *
81482065 AATTTATTAATAATATTTGAAGA
1 AATTTATTAAAAAAATTTAAAAA
81482088 AATTTATTTAAAAAAATTTAAAAA
1 AATTTA-TTAAAAAAATTTAAAAA
81482112 AAT
1 AAT
81482115 AATGTTATAA
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.56, C:0.00, G:0.04, T:0.40
Consensus pattern (23 bp):
AATTTATTAAAAAAATTTAAAAA
Found at i:81482569 original size:29 final size:30
Alignment explanation
Indices: 81482507--81482580 Score: 96
Period size: 29 Copynumber: 2.5 Consensus size: 30
81482497 ACTATAAAAA
* *
81482507 TAGTCACTTTTGTTTGACTCATGTTACATTT
1 TAGTCACTTATGTTTGAC-AATGTTACATTT
*
81482538 TAGTCACTTATGTTTGA-AATGTTACGTTT
1 TAGTCACTTATGTTTGACAATGTTACATTT
*
81482567 TAGTCAGTTATGTT
1 TAGTCACTTATGTT
81482581 ATTATTTTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
29 23 0.59
31 16 0.41
ACGTcount: A:0.22, C:0.12, G:0.16, T:0.50
Consensus pattern (30 bp):
TAGTCACTTATGTTTGACAATGTTACATTT
Found at i:81483777 original size:59 final size:59
Alignment explanation
Indices: 81483667--81483778 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 59
81483657 GACGACATAA
* * *
81483667 ATTACTATAAAAAATTATGCAATGTGAAATAATGACGACATATTTTTAAAAAAAATATT
1 ATTACTATAAAAAATGATGCAATGTGAAAAAATAACGACATATTTTTAAAAAAAATATT
81483726 ATTACTATAAAAAATGATGCAAT-TGAAAAAATAACGACATATTTTTAAAAAAA
1 ATTACTATAAAAAATGATGCAATGTGAAAAAATAACGACATATTTTTAAAAAAA
81483779 TTTATTGAGG
Statistics
Matches: 50, Mismatches: 3, Indels: 1
0.93 0.06 0.02
Matches are distributed among these distances:
58 28 0.56
59 22 0.44
ACGTcount: A:0.54, C:0.07, G:0.08, T:0.31
Consensus pattern (59 bp):
ATTACTATAAAAAATGATGCAATGTGAAAAAATAACGACATATTTTTAAAAAAAATATT
Found at i:81487536 original size:13 final size:13
Alignment explanation
Indices: 81487518--81487544 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
81487508 ATCGCATTCA
81487518 TAAATAAATGCGT
1 TAAATAAATGCGT
81487531 TAAATAAATGCGT
1 TAAATAAATGCGT
81487544 T
1 T
81487545 TTCTCACTAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.44, C:0.07, G:0.15, T:0.33
Consensus pattern (13 bp):
TAAATAAATGCGT
Found at i:81488749 original size:13 final size:13
Alignment explanation
Indices: 81488731--81488756 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
81488721 CATTTTCAGG
81488731 TCATTTTCATTTT
1 TCATTTTCATTTT
81488744 TCATTTTCATTTT
1 TCATTTTCATTTT
81488757 ATTTTTGGAG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.15, C:0.15, G:0.00, T:0.69
Consensus pattern (13 bp):
TCATTTTCATTTT
Found at i:81488806 original size:57 final size:58
Alignment explanation
Indices: 81488745--81488864 Score: 163
Period size: 57 Copynumber: 2.1 Consensus size: 58
81488735 TTTCATTTTT
* *
81488745 CATTTTCA-TTTTATTTTTGGAGAAAACCACATTCATTTTCAAATGATT-CTATTTCTC
1 CATTTTCATTTTTA-TTTTGGAGAAAACCACAATAATTTTCAAATGATTCCTATTTCTC
* * * *
81488802 CATTTTCATTTTTATTTTGGAGAAAACCATAATAATTTTCGAGTGTTTCCTATTTCTC
1 CATTTTCATTTTTATTTTGGAGAAAACCACAATAATTTTCAAATGATTCCTATTTCTC
81488860 CATTT
1 CATTT
81488865 ACACTATCTC
Statistics
Matches: 55, Mismatches: 6, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
57 36 0.65
58 19 0.35
ACGTcount: A:0.27, C:0.17, G:0.08, T:0.48
Consensus pattern (58 bp):
CATTTTCATTTTTATTTTGGAGAAAACCACAATAATTTTCAAATGATTCCTATTTCTC
Found at i:81494572 original size:16 final size:16
Alignment explanation
Indices: 81494553--81494583 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
81494543 CTTCTTCACT
81494553 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
81494569 TACTTACTTACTTAA
1 TACTCACTTACTTAA
81494584 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:81494589 original size:20 final size:20
Alignment explanation
Indices: 81494550--81494589 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
81494540 AAACTTCTTC
* *
81494550 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
81494570 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
81494590 TTATTAATAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:81494703 original size:23 final size:24
Alignment explanation
Indices: 81494662--81494706 Score: 65
Period size: 23 Copynumber: 1.9 Consensus size: 24
81494652 TTTGCTCTTC
* *
81494662 TAGCATGAACTTGTTTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
81494686 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
81494707 ACCTTACCTT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
23 13 0.68
24 6 0.32
ACGTcount: A:0.22, C:0.22, G:0.11, T:0.44
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:81495034 original size:55 final size:54
Alignment explanation
Indices: 81494780--81495035 Score: 226
Period size: 55 Copynumber: 4.8 Consensus size: 54
81494770 ACACGGGTAC
* * * *
81494780 CTTACC-ATTGCCATGACTTGTCATAGTCTTACGTGGTATCCTT---TT-GAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
* *
81494829 CTTACC-ATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATG-AA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTA-GAAA
* * * * *
81494882 CTCACCAA-TGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTGTAGTAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCC-TTACC-T-TAGAAA
** * ** *
81494937 CTTATTAA-TGCCATGTCTTGACATGGTCTTACATTATTTCCTTACCTTAGAAA
1 CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
* *
81494990 CCTTACCAATTGCCATGCCTTGGCATGGTCTTACATGATATCCTTA
1 -CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTA
81495036 AACCCTAATG
Statistics
Matches: 169, Mismatches: 25, Indels: 20
0.79 0.12 0.09
Matches are distributed among these distances:
49 39 0.23
52 4 0.02
53 44 0.26
54 11 0.07
55 69 0.41
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.37
Consensus pattern (54 bp):
CTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTTACCTTAGAAA
Found at i:81517337 original size:46 final size:46
Alignment explanation
Indices: 81517287--81517462 Score: 205
Period size: 46 Copynumber: 3.8 Consensus size: 46
81517277 TGGTTGAGCA
81517287 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
81517333 TCCGAACTCCTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* *
81517380 TCCGAGCTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
81517426 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81517463 GCGGGTTACA
Statistics
Matches: 107, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 67 0.63
47 30 0.28
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.20, G:0.29, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:81517443 original size:93 final size:93
Alignment explanation
Indices: 81517284--81517454 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
81517274 GGATGGTTGA
* *
81517284 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCCTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATGCCCGAACTCCTTGAGT
81517349 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCGAGTTCGAGAGATGTAACTAG
* * *
81517377 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATGCCCGAACTCCTTGAGT
81517442 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
81517455 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTAACTTATGGATGCGAATGCCCGAACTCCTTGAGT
TGAGTCCGAGTTCGAGAGATGTAACTAG
Found at i:81522859 original size:46 final size:45
Alignment explanation
Indices: 81522809--81522984 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 45
81522799 TGGTTGAGCA
81522809 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
*** * *
81522855 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTAACTAG-GCA-
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAAG
*
81522902 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-G
* * *
81522948 CCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
81522985 GCGGGTTACA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
45 1 0.01
46 68 0.62
47 32 0.29
48 1 0.01
49 3 0.03
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.29, T:0.28
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAG
Found at i:81522965 original size:93 final size:93
Alignment explanation
Indices: 81522806--81522976 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
81522796 GGATGGTTGA
* *
81522806 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
81522871 TGAGTCCGAGTTCGAGAGATGTAACTAG
66 TGAGTCCAAGTTCGAGAGATGTAACTAG
* *
81522899 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
81522964 TGAGTCCAAGTTC
66 TGAGTCCAAGTTC
81522977 ACTTATGGGC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCAAGTTCGAGAGATGTAACTAG
Found at i:81535604 original size:40 final size:39
Alignment explanation
Indices: 81535506--81535768 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
81535496 TCCTCGTTCA
* * * *
81535506 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
81535545 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81535584 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
81535624 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
81535664 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
81535704 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
81535745 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
81535769 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:81535728 original size:120 final size:119
Alignment explanation
Indices: 81535506--81535768 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
81535496 TCCTCGTTCA
* * *
81535506 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
81535571 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
81535624 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
81535689 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
81535745 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
81535769 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:81535777 original size:41 final size:41
Alignment explanation
Indices: 81535700--81535777 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
81535690 TTTGTATCTC
* * *
81535700 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
81535741 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
81535778 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:81549151 original size:27 final size:27
Alignment explanation
Indices: 81549121--81549289 Score: 194
Period size: 27 Copynumber: 6.3 Consensus size: 27
81549111 TGTAGGGTAG
* **
81549121 AATTACCAAAATACCCTTGGTTTACAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
81549148 AATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
81549175 AATTACCAAAATACCTTTGGTTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
81549202 AATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
81549229 AATTACCAAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * * *
81549256 AATTACCAAAGTACCCCTGATTTATAG
1 AATTACCAAAATACCCTTGATTTGTAA
81549283 AATTACC
1 AATTACC
81549290 GTTTTACCCT
Statistics
Matches: 121, Mismatches: 21, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 121 1.00
ACGTcount: A:0.39, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:81549179 original size:54 final size:54
Alignment explanation
Indices: 81549121--81549325 Score: 212
Period size: 54 Copynumber: 3.8 Consensus size: 54
81549111 TGTAGGGTAG
* * *
81549121 AATTACCAAAATACCCTTGGTTTACAAAATTACCAAAATACCCCTGGTTTGTAA
1 AATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCCTGATTTGTAA
* * * ** * *
81549175 AATTACCAAAATACCTTTGGTTTGTAAAATTACCAAAATACCCCTAATTTGTGA
1 AATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCCTGATTTGTAA
* ** * * *
81549229 AATTACCAAAATACCCTCGACTTGTAAAATTACCAAAGTACCCCTGATTTATAG
1 AATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCCTGATTTGTAA
**** **
81549283 AATTACCGTTTTACCCTCGATTTACAAAATTATTAAAATACCC
1 AATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCC
81549326 TTGTAGGGTA
Statistics
Matches: 126, Mismatches: 25, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
54 126 1.00
ACGTcount: A:0.39, C:0.22, G:0.08, T:0.31
Consensus pattern (54 bp):
AATTACCAAAATACCCTCGATTTACAAAATTACCAAAATACCCCTGATTTGTAA
Found at i:81549340 original size:27 final size:27
Alignment explanation
Indices: 81549310--81549585 Score: 272
Period size: 27 Copynumber: 10.2 Consensus size: 27
81549300 CGATTTACAA
*
81549310 AATTATTAAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* * *
81549337 AATTATTGAAATATCCC-TATAGGGTAG
1 AATTACTAAAATA-CCCTTGTAGGGTAG
81549364 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* *
81549391 AATTACTGAAATACTCC-TGTAGCGTAG
1 AATTACTAAAATAC-CCTTGTAGGGTAG
* * *
81549418 AGTTACTGAAATA-CCTCTGTAGGGTAA
1 AATTACTAAAATACCCT-TGTAGGGTAG
*
81549445 AATTACTAAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* * *
81549472 AAGTACTGAAATACCCCTGTAGGGTAG
1 AATTACTAAAATACCCTTGTAGGGTAG
* *
81549499 AATTACCAAAATACCCTTGTAGGGTAA
1 AATTACTAAAATACCCTTGTAGGGTAG
* ** *
81549526 AAATACCGAAATACTCC-TGTAAGGTAG
1 AATTACTAAAATAC-CCTTGTAGGGTAG
** * * *
81549553 AATTACCGAGATACCCTTGTGGGGTAA
1 AATTACTAAAATACCCTTGTAGGGTAG
81549580 AATTAC
1 AATTAC
81549586 CATTTTGCCC
Statistics
Matches: 211, Mismatches: 30, Indels: 16
0.82 0.12 0.06
Matches are distributed among these distances:
25 2 0.01
26 5 0.02
27 195 0.92
28 9 0.04
ACGTcount: A:0.36, C:0.16, G:0.20, T:0.28
Consensus pattern (27 bp):
AATTACTAAAATACCCTTGTAGGGTAG
Found at i:81550026 original size:22 final size:22
Alignment explanation
Indices: 81549974--81550038 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
81549964 GCCAATTATT
* *
81549974 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTATGTGCCAAC
* *
81549996 CT-ACATATGGCTCTGTGCCAAC
1 CTGA-TTATGGCTATGTGCCAAC
*
81550018 CTGATTATGGCTATATGCCAA
1 CTGATTATGGCTATGTGCCAA
81550039 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:81550427 original size:25 final size:25
Alignment explanation
Indices: 81550380--81550428 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
81550370 TTTGATTTTG
* * *
81550380 ATTCTGTTACCTGATACTGATTCTA
1 ATTCTGTCACCTAATACTAATTCTA
*
81550405 ATTCTGTCACCTAATTCTAATTCT
1 ATTCTGTCACCTAATACTAATTCT
81550429 GATTTTGATT
Statistics
Matches: 20, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.24, C:0.22, G:0.08, T:0.45
Consensus pattern (25 bp):
ATTCTGTCACCTAATACTAATTCTA
Found at i:81550431 original size:37 final size:37
Alignment explanation
Indices: 81550390--81550468 Score: 104
Period size: 37 Copynumber: 2.1 Consensus size: 37
81550380 ATTCTGTTAC
*
81550390 CTGATACTGATTCTAATTCTGTCACCTAATTCTAATT
1 CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
** * * *
81550427 CTGATTTTGATTATGATTCTGTCACCTGATTCTGATT
1 CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
81550464 CTGAT
1 CTGAT
81550469 TGTCATTTTG
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.23, C:0.19, G:0.13, T:0.46
Consensus pattern (37 bp):
CTGATACTGATTATAATTCTGTCACCTAATTCTAATT
Found at i:81550462 original size:19 final size:19
Alignment explanation
Indices: 81550396--81550466 Score: 65
Period size: 19 Copynumber: 3.8 Consensus size: 19
81550386 TTACCTGATA
81550396 CTGATTCTAATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
* *
81550415 CTAATTCTAATTCTG--ATT
1 CTGATTCTAATTCTGTCA-C
* * *
81550433 TTGATTATGATTCTGTCAC
1 CTGATTCTAATTCTGTCAC
*
81550452 CTGATTCTGATTCTG
1 CTGATTCTAATTCTG
81550467 ATTGTCATTT
Statistics
Matches: 40, Mismatches: 9, Indels: 6
0.73 0.16 0.11
Matches are distributed among these distances:
17 1 0.03
18 11 0.28
19 27 0.68
20 1 0.03
ACGTcount: A:0.21, C:0.20, G:0.13, T:0.46
Consensus pattern (19 bp):
CTGATTCTAATTCTGTCAC
Found at i:81550469 original size:37 final size:37
Alignment explanation
Indices: 81550405--81550483 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
81550395 ACTGATTCTA
* *
81550405 ATTCTGTCACCTAATTCTAATTCTGATTTTGATTATG
1 ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
* * *
81550442 ATTCTGTCACCTGATTCTGATTCTGATTGTCATTTTG
1 ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
81550479 ATTCT
1 ATTCT
81550484 AGTTCTGATA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.20, C:0.18, G:0.13, T:0.49
Consensus pattern (37 bp):
ATTCTGTCACCTAATTCTAATTCTGATTGTCATTATG
Found at i:81559773 original size:28 final size:28
Alignment explanation
Indices: 81559742--81559832 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
81559732 GGCATTTAAC
*
81559742 GTGCGAAGTATCGGGGATGGCACTTAGT
1 GTGCGAAGTATCGAGGATGGCACTTAGT
* * *
81559770 GTGCGATA-CATCCAGAATGGCACTTAGT
1 GTGCGA-AGTATCGAGGATGGCACTTAGT
*
81559798 GTGCGAAGTAACGAGGATGGCACTTAGT
1 GTGCGAAGTATCGAGGATGGCACTTAGT
81559826 GTGCGAA
1 GTGCGAA
81559833 ACATCCAGAA
Statistics
Matches: 53, Mismatches: 8, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
27 1 0.02
28 51 0.96
29 1 0.02
ACGTcount: A:0.26, C:0.16, G:0.34, T:0.23
Consensus pattern (28 bp):
GTGCGAAGTATCGAGGATGGCACTTAGT
Found at i:81559817 original size:56 final size:56
Alignment explanation
Indices: 81559742--81559856 Score: 185
Period size: 56 Copynumber: 2.1 Consensus size: 56
81559732 GGCATTTAAC
* * * * *
81559742 GTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAATGGCACTTAGT
1 GTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
81559798 GTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
1 GTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
81559854 GTG
1 GTG
81559857 AAAGGTATCA
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.28, C:0.18, G:0.31, T:0.23
Consensus pattern (56 bp):
GTGCGAAGTAACGAGGATGGCACTTAGTGTGCGAAACATCCAGAACGACACTTAGT
Found at i:81559849 original size:28 final size:28
Alignment explanation
Indices: 81559758--81559856 Score: 126
Period size: 28 Copynumber: 3.5 Consensus size: 28
81559748 AGTATCGGGG
*
81559758 ATGGCACTTAGTGTGCGATACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
** * * *
81559786 ATGGCACTTAGTGTGCGAAGTAACGAGG
1 ATGGCACTTAGTGTGCGAAACATCCAGA
81559814 ATGGCACTTAGTGTGCGAAACATCCAGA
1 ATGGCACTTAGTGTGCGAAACATCCAGA
* *
81559842 ACGACACTTAGTGTG
1 ATGGCACTTAGTGTG
81559857 AAAGGTATCA
Statistics
Matches: 58, Mismatches: 13, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
28 58 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.23
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAACATCCAGA
Found at i:81559971 original size:32 final size:32
Alignment explanation
Indices: 81559935--81560029 Score: 145
Period size: 32 Copynumber: 3.0 Consensus size: 32
81559925 TGAGTATGTG
* * * *
81559935 ATTGGTACGAGATGATACAGGTATCTACGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
81559967 ATTGGTACAATATGGTACAGGTATGTACGGAA
1 ATTGGTACAATATGGTACAGGTATGTACGGAA
*
81559999 ATTGGTACAATATGGTACATGTATGTACGGA
1 ATTGGTACAATATGGTACAGGTATGTACGGA
81560030 GATTCAATTG
Statistics
Matches: 58, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
32 58 1.00
ACGTcount: A:0.34, C:0.11, G:0.27, T:0.28
Consensus pattern (32 bp):
ATTGGTACAATATGGTACAGGTATGTACGGAA
Found at i:81562495 original size:17 final size:17
Alignment explanation
Indices: 81562462--81562495 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
81562452 AAAAAACTTA
*
81562462 TTTATTTTTTAAGATTT
1 TTTATTTTTAAAGATTT
*
81562479 TTTATTTTTAAATATTT
1 TTTATTTTTAAAGATTT
81562496 GATGATGTGA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.03, T:0.71
Consensus pattern (17 bp):
TTTATTTTTAAAGATTT
Found at i:81563306 original size:30 final size:31
Alignment explanation
Indices: 81563256--81563328 Score: 96
Period size: 32 Copynumber: 2.4 Consensus size: 31
81563246 CAAAAATAAT
*
81563256 AAAAAAATAAAAATTAAT-AAAAGT-TATAG
1 AAAAATATAAAAATTAATAAAAAGTATATAG
* *
81563285 AAAAATATTAAAATTTTATAAAAAGTATATAG
1 AAAAATA-TAAAAATTAATAAAAAGTATATAG
81563317 AAAAATATAAAA
1 AAAAATATAAAA
81563329 GAATTATTAA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
29 6 0.16
30 9 0.24
31 11 0.29
32 12 0.32
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.27
Consensus pattern (31 bp):
AAAAATATAAAAATTAATAAAAAGTATATAG
Found at i:81563371 original size:21 final size:21
Alignment explanation
Indices: 81563312--81563393 Score: 85
Period size: 21 Copynumber: 3.9 Consensus size: 21
81563302 ATAAAAAGTA
* *
81563312 TATAGAAAAATATAAAAGAAT
1 TATAAAAAAATATAAAAAAAT
* *
81563333 TAT-TAAAAATAGAAAAAAAT
1 TATAAAAAAATATAAAAAAAT
81563353 TATAAAAAAATATAAAAAAAT
1 TATAAAAAAATATAAAAAAAT
* **
81563374 TGTAAAGAATTTATAAAAAA
1 TATAAA-AAAATATAAAAAA
81563394 TTTGAAATTT
Statistics
Matches: 51, Mismatches: 8, Indels: 3
0.82 0.13 0.05
Matches are distributed among these distances:
20 17 0.33
21 23 0.45
22 11 0.22
ACGTcount: A:0.68, C:0.00, G:0.06, T:0.26
Consensus pattern (21 bp):
TATAAAAAAATATAAAAAAAT
Found at i:81563396 original size:11 final size:10
Alignment explanation
Indices: 81563247--81563395 Score: 78
Period size: 10 Copynumber: 14.7 Consensus size: 10
81563237 GACATGTGAC
*
81563247 AAAAATAATA
1 AAAAATTATA
81563257 AAAAA--AT-
1 AAAAATTATA
81563264 AAAAATTA-A
1 AAAAATTATA
*
81563273 TAAAAGTTATA
1 -AAAAATTATA
81563284 GAAAAA-TATTA
1 -AAAAATTA-TA
**
81563295 AAATTTTATA
1 AAAAATTATA
*
81563305 AAAAGTATATA
1 AAAAAT-TATA
81563316 GAAAAA-TATA
1 -AAAAATTATA
*
81563326 AAAGAATTATT
1 AAA-AATTATA
*
81563337 AAAAA-TAGAA
1 AAAAATTA-TA
81563347 AAAAATTATA
1 AAAAATTATA
*
81563357 AAAAAATATAA
1 AAAAATTAT-A
*
81563368 AAAAATTGTA
1 AAAAATTATA
*
81563378 AAGAATTTATA
1 AA-AAATTATA
81563389 AAAAATT
1 AAAAATT
81563396 TGAAATTTTT
Statistics
Matches: 106, Mismatches: 18, Indels: 30
0.69 0.12 0.19
Matches are distributed among these distances:
7 5 0.05
8 2 0.02
9 6 0.06
10 52 0.49
11 37 0.35
12 4 0.04
ACGTcount: A:0.67, C:0.00, G:0.05, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:81564148 original size:13 final size:13
Alignment explanation
Indices: 81564118--81564158 Score: 57
Period size: 13 Copynumber: 3.2 Consensus size: 13
81564108 TTTATTAAAA
81564118 TTTAATAATTTTT
1 TTTAATAATTTTT
*
81564131 ATTAA-AATTTATT
1 TTTAATAATTT-TT
81564144 TTTAATAATTTTT
1 TTTAATAATTTTT
81564157 TT
1 TT
81564159 GTCACATGTC
Statistics
Matches: 24, Mismatches: 2, Indels: 4
0.80 0.07 0.13
Matches are distributed among these distances:
12 5 0.21
13 14 0.58
14 5 0.21
ACGTcount: A:0.34, C:0.00, G:0.00, T:0.66
Consensus pattern (13 bp):
TTTAATAATTTTT
Found at i:81564794 original size:34 final size:33
Alignment explanation
Indices: 81564693--81564816 Score: 110
Period size: 34 Copynumber: 3.7 Consensus size: 33
81564683 TTTTAAAAAA
81564693 TAAATCAGGGTTTAGAATTTTTTAA-AAAATTAAT
1 TAAAT-AGGGTTTAGAA-TTTTTAAGAAAATTAAT
* ** * *
81564727 TAAATTA-GTTTTA-AGGTTTGAAGTAAATTAAT
1 TAAA-TAGGGTTTAGAATTTTTAAGAAAATTAAT
* *
81564759 TAAACTGGGGTTTAGGATTTTTAAGAAAATTAAT
1 TAAA-TAGGGTTTAGAATTTTTAAGAAAATTAAT
*
81564793 TAAATTAGGGTTTAAAATTTTTAA
1 TAAA-TAGGGTTTAGAATTTTTAA
81564817 AAATAATTTT
Statistics
Matches: 69, Mismatches: 17, Indels: 8
0.73 0.18 0.09
Matches are distributed among these distances:
31 5 0.07
32 14 0.20
33 10 0.14
34 39 0.57
35 1 0.01
ACGTcount: A:0.41, C:0.02, G:0.15, T:0.42
Consensus pattern (33 bp):
TAAATAGGGTTTAGAATTTTTAAGAAAATTAAT
Found at i:81565068 original size:126 final size:125
Alignment explanation
Indices: 81564916--81565313 Score: 598
Period size: 126 Copynumber: 3.2 Consensus size: 125
81564906 TTTTGTTTTT
* * *
81564916 TTTTTCTATAGTAGTTTCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAATGTCAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGT-AAAA
* *
81564981 ACGCTTCAAGCAGTATGCACTGTCAGCAAAAGTATTGAAAAAAGCTCCCACGTGGATGCTC
65 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTATTGAAAAAAGCTCCCACGTGGATGCTC
* * * *
81565042 TTTTTTTACAGTAGTTCCTAAAAAAATAATTTTGAGAAGAAGGTTTTGAAAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
* * * * *
81565107 CCGCTTCAAGCAGGATGCGCTGTCAGTAAAATTACTGAAAAAAACTCCCATGTGGATGCTC
66 -CGCTTCAAGCAGGATGCACTGTCAGCAAAATTATTGAAAAAAGCTCCCACGTGGATGCTC
* * *
81565168 TTTTTCTACAGTAGTTCTTGAAAAAATAATTTTGAGAAGACAGTTCTGGAAAAATAGTGTAAAAA
1 TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGT-AAAA
* *
81565233 AAGCTTCAAGCAGGATGTACTGTCAGCAAAATTATTGAAAAAAGCTCCCACGTGGATGCTC
65 ACGCTTCAAGCAGGATGCACTGTCAGCAAAATTATTGAAAAAAGCTCCCACGTGGATGCTC
81565294 TTTTTCTACAGTAGTTCCTG
1 TTTTTCTACAGTAGTTCCTG
81565314 CTTGGCCTTA
Statistics
Matches: 241, Mismatches: 29, Indels: 4
0.88 0.11 0.01
Matches are distributed among these distances:
125 5 0.02
126 231 0.96
127 5 0.02
ACGTcount: A:0.37, C:0.15, G:0.18, T:0.30
Consensus pattern (125 bp):
TTTTTCTACAGTAGTTCCTGAAAAAATAATTTTGAGAAGACGGTTCTGAAAAAATAGTGTAAAAA
CGCTTCAAGCAGGATGCACTGTCAGCAAAATTATTGAAAAAAGCTCCCACGTGGATGCTC
Found at i:81568693 original size:46 final size:46
Alignment explanation
Indices: 81568629--81568804 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
81568619 TGTAACCCGC
* * *
81568629 CCATAAGGGAACTTGGACTCAACTCAACGAGCTCGGACGTTCCCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
81568675 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C--GTTCACAT
* * * *
81568725 -C-TCA-CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
*
81568768 CCATAAGTGAACTCGGACTCGACTCAACGAGCTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
81568805 TGCCCAAATA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGTTCACAT
Found at i:81568745 original size:93 final size:93
Alignment explanation
Indices: 81568637--81568808 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
81568627 GCCCATAAGG
* *
81568637 GAACTTGGACTCAACTCAACGAGCTCGGACGTTCCCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
81568702 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
* *
81568730 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCGACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
81568795 CGAGCTCGGATGCC
66 CGAGCTCGGATGCC
81568809 CAAATATCCT
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.31, G:0.21, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCCCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:81575505 original size:7 final size:7
Alignment explanation
Indices: 81575495--81575544 Score: 82
Period size: 7 Copynumber: 7.0 Consensus size: 7
81575485 TTATATACAT
81575495 AATACTA
1 AATACTA
81575502 AATACTA
1 AATACTA
81575509 AATACTA
1 AATACTA
81575516 AATACTA
1 AATACTA
81575523 AATACTA
1 AATACTA
*
81575530 AATACAA
1 AATACTA
81575537 AATGACTA
1 AAT-ACTA
81575545 TGTTAAGTAT
Statistics
Matches: 40, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 37 0.93
8 3 0.08
ACGTcount: A:0.58, C:0.14, G:0.02, T:0.26
Consensus pattern (7 bp):
AATACTA
Found at i:81575513 original size:21 final size:21
Alignment explanation
Indices: 81575489--81575544 Score: 78
Period size: 21 Copynumber: 2.6 Consensus size: 21
81575479 TATTAGTTAT
81575489 ATACATAATACTAAATACTAA
1 ATACATAATACTAAATACTAA
81575510 ATAC-TAAATACTAAATACTAA
1 ATACAT-AATACTAAATACTAA
*
81575531 ATACAAAATGACTA
1 ATACATAAT-ACTA
81575545 TGTTAAGTAT
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
20 1 0.03
21 26 0.84
22 4 0.13
ACGTcount: A:0.57, C:0.14, G:0.02, T:0.27
Consensus pattern (21 bp):
ATACATAATACTAAATACTAA
Found at i:81576506 original size:31 final size:33
Alignment explanation
Indices: 81576433--81576506 Score: 84
Period size: 31 Copynumber: 2.3 Consensus size: 33
81576423 GATTGTTATA
*
81576433 AAAAATT-ATAAAATAAAAATTAATTAATATTGC
1 AAAAATTGA-AAAATAAAAATTAAATAATATTGC
* *
81576466 ATAAA-TGAAAAA-AAATATTAAATAATATT-C
1 AAAAATTGAAAAATAAAAATTAAATAATATTGC
81576496 AAAAATTGAAA
1 AAAAATTGAAA
81576507 TTAACCCTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 6
0.78 0.09 0.13
Matches are distributed among these distances:
30 5 0.14
31 20 0.57
32 5 0.14
33 5 0.14
ACGTcount: A:0.64, C:0.03, G:0.04, T:0.30
Consensus pattern (33 bp):
AAAAATTGAAAAATAAAAATTAAATAATATTGC
Found at i:81579436 original size:29 final size:29
Alignment explanation
Indices: 81579394--81579449 Score: 112
Period size: 29 Copynumber: 1.9 Consensus size: 29
81579384 TGCAAAAGAA
81579394 CATGAAACTATTTTAATCCGTTACGACTG
1 CATGAAACTATTTTAATCCGTTACGACTG
81579423 CATGAAACTATTTTAATCCGTTACGAC
1 CATGAAACTATTTTAATCCGTTACGAC
81579450 GGCTTGCAGT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 27 1.00
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.34
Consensus pattern (29 bp):
CATGAAACTATTTTAATCCGTTACGACTG
Done.