Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 239 of 297
Found at i:81583816 original size:9 final size:9
Alignment explanation
Indices: 81583802--81583831 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
81583792 AAATTGAAAG
81583802 AAAAAAAAT
1 AAAAAAAAT
81583811 -AAAAAAAT
1 AAAAAAAAT
81583819 AAAAAAAAT
1 AAAAAAAAT
81583828 AAAA
1 AAAA
81583832 GCCACCATAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
8 8 0.40
9 12 0.60
ACGTcount: A:0.90, C:0.00, G:0.00, T:0.10
Consensus pattern (9 bp):
AAAAAAAAT
Found at i:81589273 original size:18 final size:18
Alignment explanation
Indices: 81589250--81589285 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81589240 ATAAGATTAC
81589250 CAACTATTCATGAACCTT
1 CAACTATTCATGAACCTT
81589268 CAACTATTCATGAACCTT
1 CAACTATTCATGAACCTT
81589286 TGGTTCATCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (18 bp):
CAACTATTCATGAACCTT
Found at i:81590191 original size:181 final size:183
Alignment explanation
Indices: 81589885--81590248 Score: 678
Period size: 181 Copynumber: 2.0 Consensus size: 183
81589875 TACATTCATC
*
81589885 AATCAATTCCAATTCTCATTCAATTCAAATATCACTACTTACCTTAATTTTATTTTTTTTCATGC
1 AATCAATTCCAATTCTCATTCAATTCAAATATCACTACTTACCTCAATTTTATTTTTTTTCATGC
81589950 ACATATATTGAAATTAAACATTTAATAATAAATAAATTGAATTAAGGTAATACAAACCGATATTT
66 ACATATATTGAAATTAAACATTTAATAATAAATAAATTGAATTAAGGTAATACAAACCGATATTT
*
81590015 TCTCTAGCTACTCCTCGATCACTTTTTCCTTTCCCTTCGCATTCAACGTCTCG
131 TCTCGAGCTACTCCTCGATCACTTTTTCCTTTCCCTTCGCATTCAACGTCTCG
81590068 AATCAATTCCAATTCTCATTCAATTCAAATATCACTACTTACCTCAATTTTA-TTTTTTT-ATGC
1 AATCAATTCCAATTCTCATTCAATTCAAATATCACTACTTACCTCAATTTTATTTTTTTTCATGC
81590131 ACATATATTGAAATTAAACATTTAATAATAAATAAATTGAATTAAGGTAATACAAACCGATATTT
66 ACATATATTGAAATTAAACATTTAATAATAAATAAATTGAATTAAGGTAATACAAACCGATATTT
* *
81590196 TCTCGAGCTACTCTTCGATCTCTTTTTCCTTTCCCTTCGCATTCAACGTCTCG
131 TCTCGAGCTACTCCTCGATCACTTTTTCCTTTCCCTTCGCATTCAACGTCTCG
81590249 GTTTCTTTGT
Statistics
Matches: 177, Mismatches: 4, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
181 119 0.67
182 7 0.04
183 51 0.29
ACGTcount: A:0.33, C:0.21, G:0.06, T:0.40
Consensus pattern (183 bp):
AATCAATTCCAATTCTCATTCAATTCAAATATCACTACTTACCTCAATTTTATTTTTTTTCATGC
ACATATATTGAAATTAAACATTTAATAATAAATAAATTGAATTAAGGTAATACAAACCGATATTT
TCTCGAGCTACTCCTCGATCACTTTTTCCTTTCCCTTCGCATTCAACGTCTCG
Found at i:81590706 original size:180 final size:179
Alignment explanation
Indices: 81590405--81590762 Score: 689
Period size: 180 Copynumber: 2.0 Consensus size: 179
81590395 TATTATTTCC
81590405 TTATTCAATTTACATCAAAACTTTAATATAACCATCAAATTTTTATCAATTAAACCCCAAATTTC
1 TTATTCAATTTACATCAAAACTTTAATATAACCATCAAATTTTTATCAATTAAACCCCAAATTTC
*
81590470 ATCATTAATTCAACATAAACCCTAATTAAAAGTCTATCATCTTTCAATATTTTCACACAAATTCA
66 ATCATTAATTCAACATAAAACCTAATTAAAAGTCTATCATCTTTCAATATTTTCACACAAATTCA
*
81590535 AAAATATTCAACTTTAGAACTTCAAAAACATCAACATCACTAAGAAAGG
131 AAAATATTCAACTTTAGAACTTCAAAAACATCAAAATCACTAAGAAAGG
81590584 TTATTCAATTTACATCAAAACTTTAATATAACCATCAAATTTTTTATCAATTAAACCCCAAATTT
1 TTATTCAATTTACATCAAAACTTTAATATAACCATCAAA-TTTTTATCAATTAAACCCCAAATTT
81590649 CATCATTAATTCAACATAAAACCTAATTAAAAGTCTATCATCTTTCAATATTTTCACACAAATTC
65 CATCATTAATTCAACATAAAACCTAATTAAAAGTCTATCATCTTTCAATATTTTCACACAAATTC
81590714 AAAAATATTCAACTTTAGAACTTCAAAAACATCAAAATCACTAAGAAAG
130 AAAAATATTCAACTTTAGAACTTCAAAAACATCAAAATCACTAAGAAAG
81590763 TGACTTAATT
Statistics
Matches: 176, Mismatches: 2, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
179 39 0.22
180 137 0.78
ACGTcount: A:0.45, C:0.20, G:0.03, T:0.33
Consensus pattern (179 bp):
TTATTCAATTTACATCAAAACTTTAATATAACCATCAAATTTTTATCAATTAAACCCCAAATTTC
ATCATTAATTCAACATAAAACCTAATTAAAAGTCTATCATCTTTCAATATTTTCACACAAATTCA
AAAATATTCAACTTTAGAACTTCAAAAACATCAAAATCACTAAGAAAGG
Found at i:81596780 original size:109 final size:109
Alignment explanation
Indices: 81596579--81596795 Score: 416
Period size: 109 Copynumber: 2.0 Consensus size: 109
81596569 TCATGCCCAA
81596579 ACATTGACTTATAAATCTTGATCAAATAACATTCATTTATTCATTTCAAATACTTCTTAAAAGTT
1 ACATTGACTTATAAATCTTGATCAAATAACATTCATTTATTCATTTCAAATACTTCTTAAAAGTT
81596644 ACAAATTACCTTACACCCAAAAAATAAAATATATTTAAGTGACT
66 ACAAATTACCTTACACCCAAAAAATAAAATATATTTAAGTGACT
81596688 ACATTGACTTATAAATCTTGATCAAATAACATTCATTTATTCATTTCAAATACTTCTTAAAAGTT
1 ACATTGACTTATAAATCTTGATCAAATAACATTCATTTATTCATTTCAAATACTTCTTAAAAGTT
* *
81596753 ACAAATTACCTTACACCTAAAACATAAAATATATTTAAGTGAC
66 ACAAATTACCTTACACCCAAAAAATAAAATATATTTAAGTGAC
81596796 AAAAACAAAA
Statistics
Matches: 106, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
109 106 1.00
ACGTcount: A:0.43, C:0.17, G:0.05, T:0.36
Consensus pattern (109 bp):
ACATTGACTTATAAATCTTGATCAAATAACATTCATTTATTCATTTCAAATACTTCTTAAAAGTT
ACAAATTACCTTACACCCAAAAAATAAAATATATTTAAGTGACT
Found at i:81597006 original size:22 final size:22
Alignment explanation
Indices: 81596981--81597030 Score: 57
Period size: 22 Copynumber: 2.3 Consensus size: 22
81596971 ATTATAGCAA
*
81596981 ATATAAAATATCATAAA-CATGC
1 ATATAAAAT-TCATAAATCATAC
* *
81597003 ATATATAATTGATAAATCATAC
1 ATATAAAATTCATAAATCATAC
81597025 ATATAA
1 ATATAA
81597031 TTCGTACCAA
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 6 0.26
22 17 0.74
ACGTcount: A:0.54, C:0.10, G:0.04, T:0.32
Consensus pattern (22 bp):
ATATAAAATTCATAAATCATAC
Found at i:81597126 original size:18 final size:18
Alignment explanation
Indices: 81597103--81597138 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
81597093 ATAAGATTAC
81597103 CAACTATTCATGAACCTT
1 CAACTATTCATGAACCTT
81597121 CAACTATTCATGAACCTT
1 CAACTATTCATGAACCTT
81597139 TGGTTCATTT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.33, C:0.28, G:0.06, T:0.33
Consensus pattern (18 bp):
CAACTATTCATGAACCTT
Found at i:81597690 original size:17 final size:17
Alignment explanation
Indices: 81597668--81597711 Score: 79
Period size: 17 Copynumber: 2.6 Consensus size: 17
81597658 CATTTGAATT
81597668 CAAATCAATCGCAATAA
1 CAAATCAATCGCAATAA
81597685 CAAATCAATCGCAATAA
1 CAAATCAATCGCAATAA
*
81597702 CAATTCAATC
1 CAAATCAATC
81597712 ACAAATCATT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
17 26 1.00
ACGTcount: A:0.50, C:0.25, G:0.05, T:0.20
Consensus pattern (17 bp):
CAAATCAATCGCAATAA
Found at i:81598379 original size:15 final size:15
Alignment explanation
Indices: 81598361--81598390 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
81598351 TCTTTCCCCA
81598361 AATTTTCGTGACTTC
1 AATTTTCGTGACTTC
*
81598376 AATTTTTGTGACTTC
1 AATTTTCGTGACTTC
81598391 TCTGCACCTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.20, C:0.17, G:0.13, T:0.50
Consensus pattern (15 bp):
AATTTTCGTGACTTC
Found at i:81599156 original size:80 final size:80
Alignment explanation
Indices: 81599023--81599183 Score: 313
Period size: 80 Copynumber: 2.0 Consensus size: 80
81599013 TTTGTGAAAA
*
81599023 AAAAGTAGTGCATATTGCATGAACTGTAATAGTAAGCCTGGTAGTTGAAAAAAGGTAGCCCACTC
1 AAAAGTAGTGCATATTGCATGAAATGTAATAGTAAGCCTGGTAGTTGAAAAAAGGTAGCCCACTC
81599088 AAGTGGCATACACGC
66 AAGTGGCATACACGC
81599103 AAAAGTAGTGCATATTGCATGAAATGTAATAGTAAGCCTGGTAGTTGAAAAAAGGTAGCCCACTC
1 AAAAGTAGTGCATATTGCATGAAATGTAATAGTAAGCCTGGTAGTTGAAAAAAGGTAGCCCACTC
81599168 AAGTGGCATACACGC
66 AAGTGGCATACACGC
81599183 A
1 A
81599184 GAGCAATTGT
Statistics
Matches: 80, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
80 80 1.00
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (80 bp):
AAAAGTAGTGCATATTGCATGAAATGTAATAGTAAGCCTGGTAGTTGAAAAAAGGTAGCCCACTC
AAGTGGCATACACGC
Found at i:81601827 original size:46 final size:45
Alignment explanation
Indices: 81601729--81601943 Score: 193
Period size: 46 Copynumber: 4.7 Consensus size: 45
81601719 TATCCGTGCT
* * * * *
81601729 GATGCATATCCTAGACATGTCTTACACTAGC-ACATCTCGTA-ACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCG-AGGCC
* *
81601773 GATGCATGTCCCAGACATGTCTGAAACTGGCTTACATCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCC
* * * * * * *
81601819 GATACATGTCCCAAACAAGTCTTACACTAGCTCTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCT-TCATCTCGAGGCC
* * *
81601865 GATGCATGTCCCAGAAATGTCTTACACTGGCATTTCATAAT-GTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC--TTCAT-CTCGAGGCC
*
81601912 GATGCATGTCCTAGACATGTCTTACACTGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCT
81601944 CACTATAACT
Statistics
Matches: 136, Mismatches: 28, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
44 26 0.19
45 2 0.01
46 70 0.51
47 36 0.26
48 2 0.01
ACGTcount: A:0.26, C:0.28, G:0.19, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCC
Found at i:81609618 original size:46 final size:44
Alignment explanation
Indices: 81609522--81609638 Score: 119
Period size: 46 Copynumber: 2.6 Consensus size: 44
81609512 ATACGCGCCG
* * *
81609522 ATGCATATCCCAGACATGTCTTGCACTGGCACATCTCGTAACCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCACATCTCGTAACCA
* * *
81609566 ATGCATGTCCCAGACATGTCTTACAGTGTCTTACATCTCG-AGGCCA
1 ATGCATGTCCCAGACATGTCTTACACTGGC--ACATCTCGTA-ACCA
* * *
81609612 ATGCATGTCTCAAACACGTCTTACACT
1 ATGCATGTCCCAGACATGTCTTACACT
81609639 AGCTCTCGTC
Statistics
Matches: 60, Mismatches: 10, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 26 0.43
45 1 0.02
46 33 0.55
ACGTcount: A:0.26, C:0.30, G:0.17, T:0.27
Consensus pattern (44 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCACATCTCGTAACCA
Found at i:81611618 original size:41 final size:41
Alignment explanation
Indices: 81611559--81611640 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
81611549 ATTTTTAAAG
*
81611559 TTAGGTTCAAGAGACCCAGAGATGTAAGAGGATCTTCTGCT
1 TTAGGTTCAAGAGACCCAGAGATGTAAGAGGATATTCTGCT
* *
81611600 TTAGGTTCAAGAGGCCCAGGGATGTAAGAGGATATTCTGCT
1 TTAGGTTCAAGAGACCCAGAGATGTAAGAGGATATTCTGCT
81611641 GCCCCAGCAA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.28, C:0.16, G:0.29, T:0.27
Consensus pattern (41 bp):
TTAGGTTCAAGAGACCCAGAGATGTAAGAGGATATTCTGCT
Found at i:81618988 original size:37 final size:36
Alignment explanation
Indices: 81618942--81619012 Score: 90
Period size: 37 Copynumber: 1.9 Consensus size: 36
81618932 CACTTTCATA
*
81618942 TTAAATTAATA-AAATACTATTAAGATAAGTATTAAAT
1 TTAAATTAATATAAA-ACTATTAAAATAA-TATTAAAT
* *
81618979 TTAATTTAATATTAAACTATTAAAATAATATTAA
1 TTAAATTAATATAAAACTATTAAAATAATATTAA
81619013 TTTTTTAAAT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
36 6 0.20
37 22 0.73
38 2 0.07
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.41
Consensus pattern (36 bp):
TTAAATTAATATAAAACTATTAAAATAATATTAAAT
Found at i:81620638 original size:15 final size:15
Alignment explanation
Indices: 81620614--81620645 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81620604 TATGCATGCA
*
81620614 AAATATAAAAGACAT
1 AAATACAAAAGACAT
81620629 AAATACAAAAGACAT
1 AAATACAAAAGACAT
81620644 AA
1 AA
81620646 TACTGAAATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.69, C:0.09, G:0.06, T:0.16
Consensus pattern (15 bp):
AAATACAAAAGACAT
Found at i:81632807 original size:18 final size:17
Alignment explanation
Indices: 81632781--81632817 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
81632771 CCATAACTTT
81632781 TAAAATAAAAACTAAAAA
1 TAAAAT-AAAACTAAAAA
*
81632799 TAAAGTAAAACTAAAAA
1 TAAAATAAAACTAAAAA
81632816 TA
1 TA
81632818 GAGTGAATGA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 13 0.72
18 5 0.28
ACGTcount: A:0.73, C:0.05, G:0.03, T:0.19
Consensus pattern (17 bp):
TAAAATAAAACTAAAAA
Found at i:81633806 original size:16 final size:16
Alignment explanation
Indices: 81633785--81633817 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
81633775 TTTTTGCTAT
81633785 TCTTTTTTGGGGTAAC
1 TCTTTTTTGGGGTAAC
81633801 TCTTTTTTGGGGTAAC
1 TCTTTTTTGGGGTAAC
81633817 T
1 T
81633818 TTAGCTTATG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.12, G:0.24, T:0.52
Consensus pattern (16 bp):
TCTTTTTTGGGGTAAC
Found at i:81635541 original size:11 final size:11
Alignment explanation
Indices: 81635527--81635578 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
81635517 TCTTTCAATA
81635527 TTCTCTCAAAT
1 TTCTCTCAAAT
81635538 TTCTCTCAAA-
1 TTCTCTCAAAT
81635548 -TCTCTCAAAT
1 TTCTCTCAAAT
*
81635558 TTCTCTTAAAT
1 TTCTCTCAAAT
*
81635569 TCCTCTCAAA
1 TTCTCTCAAA
81635579 ACTCTCGTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.42
Consensus pattern (11 bp):
TTCTCTCAAAT
Found at i:81635553 original size:20 final size:21
Alignment explanation
Indices: 81635521--81635578 Score: 82
Period size: 20 Copynumber: 2.7 Consensus size: 21
81635511 CTTCAATCTT
81635521 TCAATATTCTCTCAAATTTCTC
1 TCAA-ATTCTCTCAAATTTCTC
81635543 TCAAA-TCTCTCAAATTTCTC
1 TCAAATTCTCTCAAATTTCTC
*
81635563 TTAAATTCCTCTCAAA
1 TCAAATT-CTCTCAAA
81635579 ACTCTCGTTA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 19 0.58
21 2 0.06
22 12 0.36
ACGTcount: A:0.31, C:0.28, G:0.00, T:0.41
Consensus pattern (21 bp):
TCAAATTCTCTCAAATTTCTC
Found at i:81635634 original size:16 final size:15
Alignment explanation
Indices: 81635605--81635635 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81635595 TCAAAAAAGC
*
81635605 TCTAATTTTATTTTT
1 TCTAAATTTATTTTT
81635620 TCTAAATTTATTTTT
1 TCTAAATTTATTTTT
81635635 T
1 T
81635636 AAAATAAAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.06, G:0.00, T:0.71
Consensus pattern (15 bp):
TCTAAATTTATTTTT
Found at i:81636748 original size:7 final size:7
Alignment explanation
Indices: 81636736--81636762 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
81636726 TAGTGGATTC
81636736 GTATTTA
1 GTATTTA
81636743 GTATTTA
1 GTATTTA
81636750 GTATTTA
1 GTATTTA
81636757 GTATTT
1 GTATTT
81636763 TTTATTTAAC
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.26, C:0.00, G:0.15, T:0.59
Consensus pattern (7 bp):
GTATTTA
Found at i:81637420 original size:18 final size:18
Alignment explanation
Indices: 81637379--81637413 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
81637369 GCCAGGTACG
*
81637379 TATCCTAGCCCTTTTATA
1 TATCCTAGCCCTTATATA
81637397 TATCCTAGCCCTTATAT
1 TATCCTAGCCCTTATAT
81637414 GTTTCCTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.23, C:0.29, G:0.06, T:0.43
Consensus pattern (18 bp):
TATCCTAGCCCTTATATA
Found at i:81638009 original size:116 final size:116
Alignment explanation
Indices: 81637805--81638257 Score: 861
Period size: 116 Copynumber: 3.9 Consensus size: 116
81637795 TATTTGTACA
* * *
81637805 AACATTTTGAATCTTTTTATATTATTTCATGTAATTAGATAAAAGGTTGCTTTAAATAAAATAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
*
81637870 TGTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
81637921 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
81637986 TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
81638037 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
81638102 TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
66 TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
*
81638153 AACATTTCGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
1 AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
81638218 TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATT
66 TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATT
81638258 AAAATGAAAA
Statistics
Matches: 332, Mismatches: 5, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 332 1.00
ACGTcount: A:0.40, C:0.05, G:0.09, T:0.47
Consensus pattern (116 bp):
AACATTTTGAATATTTTTATATTATTTCATGTAATTAGATAAAAGGTTGTTTTAAATAAAGTAAT
TCTAATTTACTTTTATATTTTTAATAAAATGGAAATTATTTTAAATAAGGC
Found at i:81638262 original size:15 final size:15
Alignment explanation
Indices: 81638242--81638272 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
81638232 ATATTTTTAA
*
81638242 TAAAATGGAAATTAT
1 TAAAATGAAAATTAT
81638257 TAAAATGAAAATTAT
1 TAAAATGAAAATTAT
81638272 T
1 T
81638273 TTAAATAAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.55, C:0.00, G:0.10, T:0.35
Consensus pattern (15 bp):
TAAAATGAAAATTAT
Found at i:81641952 original size:126 final size:126
Alignment explanation
Indices: 81641280--81641944 Score: 1062
Period size: 126 Copynumber: 5.3 Consensus size: 126
81641270 GCCCAAGTTA
* * *
81641280 TTTCAGAAACCACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
** * *
81641345 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTATGCAGACATGTCTTTTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * * * *
81641406 TTTCAGAGACCACTGTAGCAAAAGAGCATCCACGTGGGAGCTTCTTCCAGTAATTTTGCTGAAAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
81641471 TGCATCCTGCTTGAAGCGTTTTT-ACCACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGA-CACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
*
81641532 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGAAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
* * * *
81641597 TGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACACATCTTCTCAAAATTATTC
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * *
81641658 TTTCAGATACTATTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
* * * *
81641723 TGCATCCTGCTTGAAGCGTTTTTTACACTATTTGCACAGACACATCTTCTCAAAATTATTC
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
* * *
81641784 TTTCAGATACTATTATAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
*
81641849 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAATTTATTT
66 TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
81641910 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
1 TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGT
81641945 AGAAGCTTTT
Statistics
Matches: 508, Mismatches: 29, Indels: 4
0.94 0.05 0.01
Matches are distributed among these distances:
125 1 0.00
126 506 1.00
127 1 0.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.34
Consensus pattern (126 bp):
TTTCAGAGACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTGACAA
TGCATCCTGCTTGAAGCGTTTTTGACACTATTTGCGCAGACACGTCTTCTCAAAATTATTT
Found at i:81649369 original size:44 final size:44
Alignment explanation
Indices: 81649306--81651306 Score: 2357
Period size: 44 Copynumber: 45.5 Consensus size: 44
81649296 CTCCTTGCCT
* * *
81649306 AATACGGAGAAGCCGAATCTGTCATCTTCGATCTG-TCCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCT-CTCTGTC
* * *
81649350 AATACAGAGACACCAAATCTGTTATCTTCAATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * * *
81649394 AATACAGAGACGTCAAATCTGTCATCTTCAATCTACCCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * * *
81649438 AATATAGAGACGCCAAATCTGTTATCTTCGATCTACTCTTTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
** *
81649482 AATACAGAGACGATAAATCTGTTATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * * * *
81649526 AATACAAAGACGACAAATCTGTTATCTTTGATTTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
81649570 AATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTTTGCC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * *
81649614 AATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
* * * * *
81649658 AATACAGAAATGCCAAATCTGTTATCTTCGATCTGCTCTTTGAC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
81649702 AATACAGAGACGCCAAATCT-ACTATCTTCGATCTACTCTCTG-C
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* *
81649745 ----C--A-ATGCCAAATCTG-CTATCTTCGATCTGCTCTCTGCC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* *
81649782 AATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTTTGCC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * *
81649826 AATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
* *
81649870 AATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTTTGCC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * *
81649914 AATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
* *
81649958 AATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTTTGCC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * *
81650002 AATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
* **
81650046 AATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTTTAAC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * * * *
81650090 AATACAAAGATGTCGAATC-GACTATCTTCGATCTGCTCTCTGAC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* *
81650134 CATACAGAGAAGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650178 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650223 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650267 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650312 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650356 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650401 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650445 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650490 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650534 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650579 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650623 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650668 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650712 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650757 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650801 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650846 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * *
81650890 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTC
1 AATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
*
81650935 AATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * * * * *
81650979 AATACAGAAAAGCCAAATTTGTTATCTTTGATCTGTTCTCTGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * * * *
81651023 AATACAGAGACGACACATCTGTTATCTTCAATCTGCTCTCTATC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* *
81651067 AATACAAAGACGCCAAATCTG-CTATC-TCTGATCTGCTCTCTGCC
1 AATACAGAGACGCCAAATCTGTC-ATCTTC-GATCTGCTCTCTGTC
* * * * * *
81651111 AATACAGAGATGCAAAATCTG-CTTCTTCAATCTGCTCCCCGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
*
81651154 TAATATAGAGACGCCAAATCT-TCTATCTTCGATCTGCTCTCTGTC
1 -AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * * * *
81651199 AATACAGAGATGCCAGATGTG-CTTTCTTTGATCTGCTCTCCGTC
1 AATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * *
81651243 AATACAGAGACGCCAAATCTG-CTTCTTCGATTTG-TTTCCCGTC
1 AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCT-CTGTC
81651286 TAATACAGAGACGCCAAATCT
1 -AATACAGAGACGCCAAATCT
81651307 TCGATCTGCT
Statistics
Matches: 1680, Mismatches: 230, Indels: 94
0.84 0.11 0.05
Matches are distributed among these distances:
36 30 0.02
37 2 0.00
39 1 0.00
41 1 0.00
42 2 0.00
43 34 0.02
44 1230 0.73
45 380 0.23
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (44 bp):
AATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
Found at i:81649763 original size:36 final size:36
Alignment explanation
Indices: 81649713--81649784 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
81649703 ATACAGAGAC
81649713 GCCAAATCTACTATCTTCGATCTACTCTCTGCCAAT
1 GCCAAATCTACTATCTTCGATCTACTCTCTGCCAAT
* *
81649749 GCCAAATCTGCTATCTTCGATCTGCTCTCTGCCAAT
1 GCCAAATCTACTATCTTCGATCTACTCTCTGCCAAT
81649785 ACAGAGACGC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.22, C:0.33, G:0.11, T:0.33
Consensus pattern (36 bp):
GCCAAATCTACTATCTTCGATCTACTCTCTGCCAAT
Found at i:81650242 original size:89 final size:89
Alignment explanation
Indices: 81649747--81651263 Score: 2033
Period size: 89 Copynumber: 17.1 Consensus size: 89
81649737 CTCTCTGCCA
* * * * *
81649747 ATGCCAAATCTGCT-ATCTTCGATCTGCTCTCTGCCAATACAGAGACGCCAAATCTG-CTATCTT
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTC-ATCTT
* *
81649810 CGATCTGCTCTTTGCCAATACAGAG
65 CGATCTGCTCTCTGTCAATACAGAG
* * * * ** * * *
81649835 ACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTCAATACAGAGACGCCAAATCTG-CTATCTT
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTC-ATCTT
* *
81649898 CGATCTGCTCTTTGCCAATACAGAG
65 CGATCTGCTCTCTGTCAATACAGAG
* * * * ** * * *
81649923 ACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTCAATACAGAGACGCCAAATCTG-CTATCTT
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTC-ATCTT
* *
81649986 CGATCTGCTCTTTGCCAATACAGAG
65 CGATCTGCTCTCTGTCAATACAGAG
* * * * ** * * *
81650011 ACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTCAATACAGAGACGCCAAATCTG-CTATCTT
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTC-ATCTT
* ** *
81650074 CGATCTGCTCTTTAACAATACAAAG
65 CGATCTGCTCTCTGTCAATACAGAG
* * * * * * * * *
81650099 ATGTCGAATC-G-ACTATCTTCGATCTGCTCTCTGACCATACAGAGAAGCCAAATCTGTCATCTT
1 ATGCCAAATCTGTTC-ATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTT
81650162 CGATCTGCTCTCTGTCAATACAGAG
65 CGATCTGCTCTCTGTCAATACAGAG
81650187 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650252 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650276 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650341 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650365 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650430 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650454 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650519 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650543 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650608 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650632 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650697 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650721 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650786 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650810 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
81650875 GATCTGCTCTCTGTCAATACAGAG
66 GATCTGCTCTCTGTCAATACAGAG
81650899 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
*
81650964 GATCTGCTCTCTGTCAATACAGAA
66 GATCTGCTCTCTGTCAATACAGAG
* * ** * * * * * *
81650988 AAGCCAAATTTGTT-ATCTTTGATCTGTTCTCTGTCAATACAGAGACGACACATCTGTTATCTTC
1 ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
* * *
81651052 AATCTGCTCTCTATCAATACAAAG
66 GATCTGCTCTCTGTCAATACAGAG
* * * * * * * * *
81651076 ACGCCAAATCTGCT-ATC-TCTGATCTGCTCTCTGCCAATACAGAGATGCAAAATCTG-CTTCTT
1 ATGCCAAATCTGTTCATCTTC-AATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTT
* * * *
81651138 CAATCTGCTCCCCGTCTAATATAGAG
65 CGATCTGCTCTCTGTC-AATACAGAG
* * * * * * * *
81651164 ACGCCAAATC--TTCTATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAGATGTG-CTTTCT
1 ATGCCAAATCTGTTC-ATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTC-ATCT
* *
81651226 TTGATCTGCTCTCCGTCAATACAGAG
64 TCGATCTGCTCTCTGTCAATACAGAG
*
81651252 ACGCCAAATCTG
1 ATGCCAAATCTG
81651264 CTTCTTCGAT
Statistics
Matches: 1343, Mismatches: 73, Indels: 24
0.93 0.05 0.02
Matches are distributed among these distances:
86 1 0.00
87 19 0.01
88 509 0.38
89 813 0.61
90 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (89 bp):
ATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCTGTCATCTTC
GATCTGCTCTCTGTCAATACAGAG
Found at i:81650360 original size:178 final size:178
Alignment explanation
Indices: 81649306--81651263 Score: 2443
Period size: 178 Copynumber: 11.1 Consensus size: 178
81649296 CTCCTTGCCT
* * * * * *
81649306 AATACGGAGAAGCCGAATCTG-TCATCTTCGATCTG-TCCTCTGTCAATACAGAGACACCAAATC
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCT-CTTTGTCAATACAAAGACGCCAAATC
* * * * * * *
81649369 TGTTATCTTCAATCTGCTCTCTGTCAATACAGAGACGTCAAATCTG-TCATCTTCAATCTACCCT
65 TGTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCT
* * * *
81649433 CTGTCAATATAGAGACGCCAAATCTGTTATCTTCGATCTACTCTTTGTC
130 CTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* ** * *
81649482 AATACAGAGACGATAAATCTGTT-ATCTTCGATCTGCTCTCTGTCAATACAAAGACGACAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* * * * * *
81649546 GTTATCTTTGATTTGCTCTCTGTCAATACAGAGACGCCAAATCTGCT-ATCTTCGATCTGCTCTT
66 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTC
* * * * *
81649610 TGCCAATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTC
131 TGTCAATACAGAGACGCCAAATCTG-TCATCTTCGATCTGCTCTCTGTC
* * *
81649658 AATACAGAAATGCCAAATCTGTT-ATCTTCGATCTGCTCTTTGACAATACAGAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* * *
81649722 -ACTATCTTCGATCTACTCTCTG-C----C--A-ATGCCAAATCTGCT-ATCTTCGATCTGCTCT
66 GTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCT
* * *
81649777 CTGCCAATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTTTGCC
130 CTGTCAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * * * * * *
81649826 AATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTCAATACAGAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* * * * * * * *
81649890 G-CTATCTTCGATCTGCTCTTTGCCAATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCT
66 GTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCT
* *
81649953 CTGTCAATACAGAGACGCCAAATCTG-CTATCTTCGATCTGCTCTTTGCC
130 CTGTCAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
* * * * * * * *
81650002 AATACAGAGACGTCAAATATGAT-ATCTTTGATTTGCTCTCTGTCAATACAGAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* ** * * * *
81650066 G-CTATCTTCGATCTGCTCTTTAACAATACAAAGATGTCGAATC-G-ACTATCTTCGATCTGCTC
66 GTC-ATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTC-ATCTTCGATCTGCTC
* * *
81650128 TCTGACCATACAGAGAAGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
129 TCTGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
*
81650178 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* *
81650243 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTT
66 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTC
*
81650308 TGTCAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
131 TGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
*
81650356 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* *
81650421 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTT
66 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTC
*
81650486 TGTCAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
131 TGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
*
81650534 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* *
81650599 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTT
66 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTC
*
81650664 TGTCAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
131 TGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
*
81650712 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* *
81650777 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTT
66 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTC
*
81650842 TGTCAATACAAAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
131 TGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
*
81650890 AATACAGAGATGCCAAATCTGTTCATCTTCAATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
1 AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
* * * * *
81650955 GTCATCTTCGATCTGCTCTCTGTCAATACAGAAAAGCCAAATTTGTT-ATCTTTGATCTGTTCTC
66 GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTC
* * * * *
81651019 TGTCAATACAGAGACGACACATCTGTTATCTTCAATCTGCTCTCTATC
131 TGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
* * * * * * * *
81651067 AATACAAAGACGCCAAATCTGCT-ATC-TCTGATCTGCTCTCTGCCAATACAGAGATGCAAAATC
1 AATACAGAGATGCCAAATCTGTTCATCTTC-GATCTGCTCTTTGTCAATACAAAGACGCCAAATC
* * * * * *
81651130 TG-CTTCTTCAATCTGCTCCCCGTCTAATATAGAGACGCCAAATC--TTCTATCTTCGATCTGCT
65 TGTCATCTTCGATCTGCTCTCTGTC-AATACAGAGATGCCAAATCTGTTC-ATCTTCGATCTGCT
* * * * * *
81651192 CTCTGTCAATACAGAGATGCCAGATGTG-CTTTCTTTGATCTGCTCTCCGTC
128 CTCTGTCAATACAGAGACGCCAAATCTGTC-ATCTTCGATCTGCTCTCTGTC
*
81651243 AATACAGAGACGCCAAATCTG
1 AATACAGAGATGCCAAATCTG
81651264 CTTCTTCGAT
Statistics
Matches: 1612, Mismatches: 142, Indels: 56
0.89 0.08 0.03
Matches are distributed among these distances:
168 143 0.09
169 2 0.00
171 1 0.00
173 1 0.00
174 2 0.00
175 23 0.01
176 584 0.36
177 151 0.09
178 704 0.44
179 1 0.00
ACGTcount: A:0.27, C:0.26, G:0.14, T:0.32
Consensus pattern (178 bp):
AATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTTTGTCAATACAAAGACGCCAAATCT
GTCATCTTCGATCTGCTCTCTGTCAATACAGAGATGCCAAATCTGTTCATCTTCGATCTGCTCTC
TGTCAATACAGAGACGCCAAATCTGTCATCTTCGATCTGCTCTCTGTC
Found at i:81655640 original size:51 final size:51
Alignment explanation
Indices: 81655580--81655678 Score: 189
Period size: 51 Copynumber: 1.9 Consensus size: 51
81655570 CTACATTCTC
*
81655580 TATTGCCCCTTTCTCATGGGGTAGGATTTGTTTCTCCTCTTGTTTCACCAT
1 TATTGCCCCTTTCTCATGGAGTAGGATTTGTTTCTCCTCTTGTTTCACCAT
81655631 TATTGCCCCTTTCTCATGGAGTAGGATTTGTTTCTCCTCTTGTTTCAC
1 TATTGCCCCTTTCTCATGGAGTAGGATTTGTTTCTCCTCTTGTTTCAC
81655679 TATTCTCAAC
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.12, C:0.25, G:0.17, T:0.45
Consensus pattern (51 bp):
TATTGCCCCTTTCTCATGGAGTAGGATTTGTTTCTCCTCTTGTTTCACCAT
Found at i:81666510 original size:11 final size:11
Alignment explanation
Indices: 81666490--81666527 Score: 51
Period size: 11 Copynumber: 3.5 Consensus size: 11
81666480 TATTTAGAAA
*
81666490 AAAAAATATTT
1 AAAAATTATTT
81666501 AAAAATTA-TT
1 AAAAATTATTT
*
81666511 AAAAATTATTA
1 AAAAATTATTT
81666522 AAAAAT
1 AAAAAT
81666528 AGAAAAAAAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 10 0.42
11 14 0.58
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (11 bp):
AAAAATTATTT
Found at i:81666514 original size:9 final size:10
Alignment explanation
Indices: 81666499--81666525 Score: 54
Period size: 10 Copynumber: 2.7 Consensus size: 10
81666489 AAAAAAATAT
81666499 TTAAAAATTA
1 TTAAAAATTA
81666509 TTAAAAATTA
1 TTAAAAATTA
81666519 TTAAAAA
1 TTAAAAA
81666526 ATAGAAAAAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 17 1.00
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (10 bp):
TTAAAAATTA
Found at i:81666677 original size:17 final size:16
Alignment explanation
Indices: 81666642--81666673 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
81666632 TATAATTTTT
81666642 TATAAAATAGTAAAAA
1 TATAAAATAGTAAAAA
81666658 TATAAAATAGTAAAAA
1 TATAAAATAGTAAAAA
81666674 ATATTATAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.69, C:0.00, G:0.06, T:0.25
Consensus pattern (16 bp):
TATAAAATAGTAAAAA
Found at i:81668985 original size:13 final size:13
Alignment explanation
Indices: 81668969--81668998 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
81668959 AAGTGCTGCA
81668969 AAAAATGCTTATG
1 AAAAATGCTTATG
*
81668982 AAAAATGCTTTTG
1 AAAAATGCTTATG
81668995 AAAA
1 AAAA
81668999 GCTTGGTCTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.50, C:0.07, G:0.13, T:0.30
Consensus pattern (13 bp):
AAAAATGCTTATG
Found at i:81670549 original size:59 final size:58
Alignment explanation
Indices: 81670486--81670671 Score: 189
Period size: 59 Copynumber: 3.1 Consensus size: 58
81670476 CAAAATCAAT
81670486 TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCGTATAAGAA
1 TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC-TATAAGAA
* * * * * ** * * *
81670545 TATTTAATACTAAGAATTTTATTA-AATTATATATTTAT-ATTAAATTATATT-TAATAATAA
1 TATTTTAGA-TTA-TATTTTA-TAGTATTATATA-TTATGATTTTAGTAAATTCT-ATAAGAA
81670605 TTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAA
1 -TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTC-TATAAGAA
81670665 TATTTTA
1 TATTTTA
81670672 ATATTAAGAA
Statistics
Matches: 97, Mismatches: 20, Indels: 20
0.71 0.15 0.15
Matches are distributed among these distances:
58 6 0.06
59 38 0.39
60 16 0.16
61 31 0.32
62 6 0.06
ACGTcount: A:0.40, C:0.02, G:0.06, T:0.52
Consensus pattern (58 bp):
TATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCTATAAGAA
Found at i:81670597 original size:16 final size:18
Alignment explanation
Indices: 81670560--81670594 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
81670550 AATACTAAGA
81670560 ATTT-TATTAAATTATAT
1 ATTTATATTAAATTATAT
81670577 ATTTATATTAAATTATAT
1 ATTTATATTAAATTATAT
81670595 TTAATAATAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 4 0.24
18 13 0.76
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (18 bp):
ATTTATATTAAATTATAT
Found at i:81670606 original size:16 final size:17
Alignment explanation
Indices: 81670567--81670612 Score: 51
Period size: 18 Copynumber: 2.8 Consensus size: 17
81670557 AGAATTTTAT
* *
81670567 TAAATTATATATTTATAT
1 TAAATTATAT-TTAATAA
81670585 TAAATTATATTTAATAA
1 TAAATTATATTTAATAA
81670602 T-AATTAT-TTTA
1 TAAATTATATTTA
81670613 GATTATATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
15 4 0.15
16 6 0.23
17 6 0.23
18 10 0.38
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TAAATTATATTTAATAA
Found at i:81670608 original size:26 final size:25
Alignment explanation
Indices: 81670579--81670635 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 25
81670569 AATTATATAT
81670579 TTATATTAAATTATATTTAATAATAA
1 TTATATTAAATTATATTTAATAAT-A
* * * *
81670605 TTATTTTAGATTATATTTTATAGTA
1 TTATATTAAATTATATTTAATAATA
81670630 TTATAT
1 TTATAT
81670636 ATTATGATTT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
25 6 0.23
26 20 0.77
ACGTcount: A:0.40, C:0.00, G:0.04, T:0.56
Consensus pattern (25 bp):
TTATATTAAATTATATTTAATAATA
Found at i:81670640 original size:120 final size:124
Alignment explanation
Indices: 81670483--81670722 Score: 409
Period size: 120 Copynumber: 2.0 Consensus size: 124
81670473 CCACAAAATC
*
81670483 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCGTATAAGAATA-
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
81670547 TTTAATACTAAGAATTTTATTAAA-T-T-ATATATTTATATTA-AATTATATTTAATAAT
66 TTTAATACTAAGAATTTTATTAAATTATAATATATTTA-ATTATAATTATATTTAATAAT
81670603 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
1 AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
* *
81670668 TTTAATATTAAGAATTTTATTAAATTATAATATATTTAATTATAATTATGTTTAA
66 TTTAATACTAAGAATTTTATTAAATTATAATATATTTAATTATAATTATATTTAA
81670723 ATATGATTAA
Statistics
Matches: 112, Mismatches: 3, Indels: 6
0.93 0.02 0.05
Matches are distributed among these distances:
120 63 0.56
121 23 0.21
122 1 0.01
123 5 0.04
124 20 0.18
ACGTcount: A:0.42, C:0.01, G:0.06, T:0.51
Consensus pattern (124 bp):
AATTATTTTAGATTATATTTTATAGTATTATATATTATGATTTTAGTAAATTCATATAAGAATAT
TTTAATACTAAGAATTTTATTAAATTATAATATATTTAATTATAATTATATTTAATAAT
Found at i:81670953 original size:45 final size:44
Alignment explanation
Indices: 81670867--81670957 Score: 119
Period size: 45 Copynumber: 2.0 Consensus size: 44
81670857 ACCTCTATTC
* *
81670867 CATTCAACCAAACACAAGATTACTATTACGCCTCTATTCCATTA
1 CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCATTA
*** *
81670911 CATTCAACCAAACAGTTGATTTGCTATTACACCTCTAATCCATTA
1 CATTCAACCAAACACAAGA-TTACTATTACACCTCTAATCCATTA
81670956 CA
1 CA
81670958 CCTCTAATCC
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
44 16 0.40
45 24 0.60
ACGTcount: A:0.35, C:0.29, G:0.05, T:0.31
Consensus pattern (44 bp):
CATTCAACCAAACACAAGATTACTATTACACCTCTAATCCATTA
Found at i:81670957 original size:16 final size:16
Alignment explanation
Indices: 81670936--81671005 Score: 113
Period size: 16 Copynumber: 4.4 Consensus size: 16
81670926 TTGATTTGCT
81670936 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
81670952 ATTACACCTCTAATCC
1 ATTACACCTCTAATCC
*
81670968 ATTACACCTCTATTCC
1 ATTACACCTCTAATCC
*
81670984 ATTACGCCTCTAATCC
1 ATTACACCTCTAATCC
*
81671000 AATACA
1 ATTACA
81671006 GCGAACCAAA
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.31, C:0.36, G:0.01, T:0.31
Consensus pattern (16 bp):
ATTACACCTCTAATCC
Found at i:81678483 original size:26 final size:28
Alignment explanation
Indices: 81678454--81678513 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
81678444 TAAGATGACT
81678454 ATATAAAAAATT-TT-AATAAATAAAA-A
1 ATATAAAAAATTATTAAAT-AATAAAATA
* *
81678480 ATATATAAAATTATTAAATATTAAAATA
1 ATATAAAAAATTATTAAATAATAAAATA
81678508 ATATAA
1 ATATAA
81678514 TGAAAATATT
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
26 11 0.39
27 8 0.29
28 9 0.32
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (28 bp):
ATATAAAAAATTATTAAATAATAAAATA
Found at i:81689792 original size:60 final size:60
Alignment explanation
Indices: 81689667--81689806 Score: 169
Period size: 60 Copynumber: 2.3 Consensus size: 60
81689657 CTATTAGTAA
* *
81689667 TTTTTT-GTCACTCAACTATGAAAAGTTACAAAAATGGTCACACAACTATTAATAAATTTC
1 TTTTTTGGTCACCCAACTATGAAAAGCTACAAAAATGGTCACACAACTATTAAT-AATTTC
* * *
81689727 ATTTTTGGTCACCCAACTATGAAAAGCTAC-AAAATGGTCACTCAACTATTCAAT-TTTATC
1 TTTTTTGGTCACCCAACTATGAAAAGCTACAAAAATGGTCACACAACTATT-AATAATT-TC
* *
81689787 TTTTTTGATCATCCAACTAT
1 TTTTTTGGTCACCCAACTAT
81689807 ATTAGATTTT
Statistics
Matches: 69, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
59 2 0.03
60 43 0.62
61 24 0.35
ACGTcount: A:0.36, C:0.19, G:0.09, T:0.36
Consensus pattern (60 bp):
TTTTTTGGTCACCCAACTATGAAAAGCTACAAAAATGGTCACACAACTATTAATAATTTC
Found at i:81698215 original size:16 final size:16
Alignment explanation
Indices: 81698180--81698225 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
81698170 ATTTGGTTGA
*
81698180 AAAAATAATTTAATTG
1 AAAAATAATTTAAATG
81698196 AAAAATCAATTTAAAT-
1 AAAAAT-AATTTAAATG
*
81698212 AAAATTAA-TTAAAT
1 AAAAATAATTTAAAT
81698226 TAAATAAACA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
14 6 0.22
15 2 0.07
16 11 0.41
17 8 0.30
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.35
Consensus pattern (16 bp):
AAAAATAATTTAAATG
Found at i:81704762 original size:25 final size:25
Alignment explanation
Indices: 81704734--81704799 Score: 132
Period size: 25 Copynumber: 2.6 Consensus size: 25
81704724 ACATGTATGT
81704734 TCACACGAGCTGTGAATCAGAATGC
1 TCACACGAGCTGTGAATCAGAATGC
81704759 TCACACGAGCTGTGAATCAGAATGC
1 TCACACGAGCTGTGAATCAGAATGC
81704784 TCACACGAGCTGTGAA
1 TCACACGAGCTGTGAA
81704800 AATAGGCCTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.32, C:0.24, G:0.24, T:0.20
Consensus pattern (25 bp):
TCACACGAGCTGTGAATCAGAATGC
Found at i:81708098 original size:38 final size:38
Alignment explanation
Indices: 81708055--81708131 Score: 109
Period size: 38 Copynumber: 2.0 Consensus size: 38
81708045 GCTTGAACAT
* *
81708055 AAATGGTTTAAATGAAATAGTGGAAAGTGGAAAGTGGA
1 AAATGGATTAAATGAAATAGTGGAAAGTGGAAAGAGGA
* * *
81708093 AAATGGATTAAATGGAATTGTGGAAAGTGGGAAGAGGA
1 AAATGGATTAAATGAAATAGTGGAAAGTGGAAAGAGGA
81708131 A
1 A
81708132 GGTCTTGGTA
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.44, C:0.00, G:0.34, T:0.22
Consensus pattern (38 bp):
AAATGGATTAAATGAAATAGTGGAAAGTGGAAAGAGGA
Found at i:81709207 original size:10 final size:10
Alignment explanation
Indices: 81709188--81709237 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
81709178 TTAAATTCTA
81709188 AAAGATAAAT
1 AAAGATAAAT
81709198 ACAA-ATAAAT
1 A-AAGATAAAT
*
81709208 AAAGATAATT
1 AAAGATAAAT
81709218 AAAGATAAAT
1 AAAGATAAAT
81709228 GAAA-ATAAAT
1 -AAAGATAAAT
81709238 CTTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:81710076 original size:96 final size:97
Alignment explanation
Indices: 81709902--81710083 Score: 276
Period size: 96 Copynumber: 1.9 Consensus size: 97
81709892 TATTTATTTA
* * * * * *
81709902 TTTATTGTTGCTTAAGAATATATTGAACCTTTTGACGCGAAGAGAGATGATAGTCAAGCACTTCA
1 TTTATTGTTGCTTAAAAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
81709967 CCCCGGTTACTCAGCCCAACATACTCCTAATT
66 CCCCGGTTACTCAGCCCAACATACTCCTAATT
*
81709999 TTTATT-TTTCTTAAAAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
1 TTTATTGTTGCTTAAAAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
* *
81710063 CCTCGGTTACTCAGTCCAACA
66 CCCCGGTTACTCAGCCCAACA
81710084 CATTCTTAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 1
0.88 0.10 0.01
Matches are distributed among these distances:
96 70 0.92
97 6 0.08
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (97 bp):
TTTATTGTTGCTTAAAAACATATCGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCTCA
CCCCGGTTACTCAGCCCAACATACTCCTAATT
Found at i:81711205 original size:8 final size:8
Alignment explanation
Indices: 81711188--81711234 Score: 64
Period size: 8 Copynumber: 6.2 Consensus size: 8
81711178 ATTAATATCC
81711188 AAAA-AAT
1 AAAATAAT
81711195 AAAATAAT
1 AAAATAAT
81711203 -AAATAAT
1 AAAATAAT
81711210 AAAATAAT
1 AAAATAAT
81711218 AAAATAA-
1 AAAATAAT
*
81711225 AGAATAAT
1 AAAATAAT
81711233 AA
1 AA
81711235 TAAAAATTCT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
7 17 0.49
8 18 0.51
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (8 bp):
AAAATAAT
Found at i:81711212 original size:15 final size:15
Alignment explanation
Indices: 81711192--81711234 Score: 61
Period size: 15 Copynumber: 2.9 Consensus size: 15
81711182 ATATCCAAAA
81711192 AATAAAATAATAAAT
1 AATAAAATAATAAAT
81711207 AATAAAATAATAAAAT
1 AATAAAATAAT-AAAT
*
81711223 AA-AGAATAATAA
1 AATAAAATAATAA
81711235 TAAAAATTCT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
14 2 0.08
15 18 0.69
16 6 0.23
ACGTcount: A:0.74, C:0.00, G:0.02, T:0.23
Consensus pattern (15 bp):
AATAAAATAATAAAT
Found at i:81711218 original size:23 final size:22
Alignment explanation
Indices: 81711188--81711239 Score: 70
Period size: 23 Copynumber: 2.3 Consensus size: 22
81711178 ATTAATATCC
81711188 AAAAAATAAAATAATA-AATAAT
1 AAAAAATAAAATAA-AGAATAAT
81711210 AAAATAATAAAATAAAGAATAAT
1 AAAA-AATAAAATAAAGAATAAT
81711233 AATAAAA
1 AA-AAAA
81711240 ATTCTCCTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
22 5 0.19
23 20 0.74
24 2 0.07
ACGTcount: A:0.77, C:0.00, G:0.02, T:0.21
Consensus pattern (22 bp):
AAAAAATAAAATAAAGAATAAT
Found at i:81714862 original size:10 final size:10
Alignment explanation
Indices: 81714843--81714892 Score: 59
Period size: 10 Copynumber: 5.0 Consensus size: 10
81714833 TTAAATTCTA
81714843 AAAGATAAAT
1 AAAGATAAAT
81714853 ACAA-ATAAAT
1 A-AAGATAAAT
*
81714863 AAAGATAATT
1 AAAGATAAAT
81714873 AAAGATAAAT
1 AAAGATAAAT
81714883 GAAA-ATAAAT
1 -AAAGATAAAT
81714893 CTTAAAATTA
Statistics
Matches: 35, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
9 2 0.06
10 28 0.80
11 5 0.14
ACGTcount: A:0.68, C:0.02, G:0.08, T:0.22
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:81715362 original size:23 final size:23
Alignment explanation
Indices: 81715332--81715382 Score: 75
Period size: 23 Copynumber: 2.2 Consensus size: 23
81715322 AGACATTTTT
*
81715332 TAAATATTGTCACTAAATAATTC
1 TAAATATTATCACTAAATAATTC
*
81715355 TAAATATTATCATTAAATAATTC
1 TAAATATTATCACTAAATAATTC
*
81715378 AAAAT
1 TAAAT
81715383 TTAAAAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (23 bp):
TAAATATTATCACTAAATAATTC
Found at i:81716253 original size:79 final size:79
Alignment explanation
Indices: 81716163--81716411 Score: 428
Period size: 79 Copynumber: 3.2 Consensus size: 79
81716153 CAATTCTGCA
81716163 ATAATTAATTATGATGATATTTATTTATTTGTATTGTTTATATTTAACTAAAAAACAATACATAT
1 ATAATTAATTATGATGATATTTATTTATTTGTATTGTTTATATTTAACTAAAAAACAATACATAT
81716228 AAATAAATATCATC
66 AAATAAATATCATC
81716242 ATAATTAATTATGATGATATTTATTTATTTGTATTGTTTATATTTAACTAAAAAACAATACATAT
1 ATAATTAATTATGATGATATTTATTTATTTGTATTGTTTATATTTAACTAAAAAACAATACATAT
81716307 AAATAAATATCATC
66 AAATAAATATCATC
* * * * * *
81716321 ATAATTAATTATGATGATATTTATTTATATGTATTGTTTTTTAGTTAAAT-ATAAACAATACAAA
1 ATAATTAATTATGATGATATTTATTTATTTGTATTG-TTTATATTTAACTAAAAAACAATACATA
81716385 TAAATAAATATCATC
65 TAAATAAATATCATC
81716400 ATAATTAATTAT
1 ATAATTAATTAT
81716412 TGCAGAATTG
Statistics
Matches: 163, Mismatches: 6, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
79 153 0.94
80 10 0.06
ACGTcount: A:0.45, C:0.06, G:0.05, T:0.45
Consensus pattern (79 bp):
ATAATTAATTATGATGATATTTATTTATTTGTATTGTTTATATTTAACTAAAAAACAATACATAT
AAATAAATATCATC
Found at i:81722329 original size:47 final size:44
Alignment explanation
Indices: 81722220--81722348 Score: 145
Period size: 47 Copynumber: 2.8 Consensus size: 44
81722210 TGTTTGTGTT
*
81722220 CTAGTGTAAGACATGTCTGAGACATGCATCGGCCATATTATGAGAG
1 CTAGTGTAAGACATGTCTGAGACAGGCATCGG-C-TATTATGAGAG
*
81722266 CTAGTGTAAGACCATGTCTGGGACACGGCATCGG-TATTGAGATGAGAG
1 CTAGTGTAAGA-CATGTCTGAGACA-GGCATCGGCTATT---ATGAGAG
*
81722314 CTAGTGTAAGACATGTCT-ATGACATGCATCGGCTA
1 CTAGTGTAAGACATGTCTGA-GACAGGCATCGGCTA
81722349 CATGATGTGT
Statistics
Matches: 72, Mismatches: 4, Indels: 13
0.81 0.04 0.15
Matches are distributed among these distances:
45 4 0.06
46 18 0.25
47 25 0.35
48 25 0.35
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.26
Consensus pattern (44 bp):
CTAGTGTAAGACATGTCTGAGACAGGCATCGGCTATTATGAGAG
Found at i:81722421 original size:47 final size:46
Alignment explanation
Indices: 81722260--81722437 Score: 159
Period size: 47 Copynumber: 3.8 Consensus size: 46
81722250 GGCCATATTA
* *
81722260 TGAGAGCTAGTGTAAGACCATGTCTGGGACACGGCATCGGTA-TTGA-G
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTT-ACG
* ** * *
81722307 ATGAGAGCTAGTGTAAGA-CATGTCTATGACAT-GCATCGGC-TACA
1 -TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTACG
* * *
81722351 TGATGTGTCAGTATAAGACCATGTCTGGGACATGGCATCGACTTAACG
1 TGA-GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTT-ACG
* *
81722399 TGAGAGCCAATGTAAGACCATGTTTGGGACATGGCATCG
1 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
81722438 TCATTATACC
Statistics
Matches: 105, Mismatches: 18, Indels: 15
0.76 0.13 0.11
Matches are distributed among these distances:
43 4 0.04
44 11 0.10
45 13 0.12
46 12 0.11
47 43 0.41
48 22 0.21
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.25
Consensus pattern (46 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTACG
Found at i:81722421 original size:92 final size:94
Alignment explanation
Indices: 81722224--81722437 Score: 233
Period size: 92 Copynumber: 2.3 Consensus size: 94
81722214 TGTGTTCTAG
* * *
81722224 TGTAAGACATGTCTGAGACATGCATCGGCCATATTATGAGAGCTAGTGTAAGACCATGTCTGGGA
1 TGTAAGACATGTCTGAGACATGCATCGGCCACATGATGAGAGCTAGTATAAGACCATGTCTGGGA
* * *
81722289 CACGGCATCGGTATTGAGATGAGAGCTAG
66 CACGGCATCGGTATTAAGATGAGAGCCAA
* * *
81722318 TGTAAGACATGTCT-ATGACATGCATCGGCTACATGATGTG-TC-AGTATAAGACCATGTCTGGG
1 TGTAAGACATGTCTGA-GACATGCATCGGCCACATGATGAGAGCTAGTATAAGACCATGTCTGGG
*
81722380 ACATGGCATC-G-ACTTAACG-TGAGAGCCAA
65 ACACGGCATCGGTA-TTAA-GATGAGAGCCAA
* *
81722409 TGTAAGACCATGTTTGGGACATGGCATCG
1 TGTAAGA-CATGTCTGAGACAT-GCATCG
81722438 TCATTATACC
Statistics
Matches: 102, Mismatches: 12, Indels: 13
0.80 0.09 0.10
Matches are distributed among these distances:
90 1 0.01
91 19 0.19
92 40 0.39
93 8 0.08
94 34 0.33
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (94 bp):
TGTAAGACATGTCTGAGACATGCATCGGCCACATGATGAGAGCTAGTATAAGACCATGTCTGGGA
CACGGCATCGGTATTAAGATGAGAGCCAA
Found at i:81727061 original size:18 final size:18
Alignment explanation
Indices: 81727038--81727073 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
81727028 AAGATGGCTA
81727038 GAGTTGATAAATGATTAT
1 GAGTTGATAAATGATTAT
* *
81727056 GAGTTGGTAATTGATTAT
1 GAGTTGATAAATGATTAT
81727074 CAACTAGGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.00, G:0.25, T:0.42
Consensus pattern (18 bp):
GAGTTGATAAATGATTAT
Found at i:81730073 original size:94 final size:93
Alignment explanation
Indices: 81729882--81730142 Score: 251
Period size: 94 Copynumber: 2.8 Consensus size: 93
81729872 TTTGTGTGCT
* * * *
81729882 AGTGTAAGACATGTCTGGGACATGCATCGGCTACATTATGAGAGCTACTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCTACATGAT-AGAGCTACTATAAGACCATGTCTGG
* * **
81729947 GACATGGCATTGGTATTGAGACAAGAGCC
65 GACATGGAATTGGCACGGAGACAAGAGCC
* * *
81729976 AGTGTAAGACATGTTTGGGACATGCATCAGCTACATGAT-GTGTTAGTATAAGACCATGTCTGGG
1 AGTGTAAGACATGTTTGGGACATGCATCAGCTACATGATAGAGCTACTATAAGACCATGTCTGGG
* ** *
81730040 ACATGGAATTGGCACGGATACGTGGAAGTC
66 ACATGGAATTGGCACGGAGAC-AAG-AGCC
* * *
81730070 AGTGTAAGACCATGTTCGGGACATGGCATC-GACTTA-ATG-TGAGAGCTAGTGTAAGACCATGT
1 AGTGTAAGA-CATGTTTGGGACAT-GCATCAG-C-TACATGAT-AGAGCTACTATAAGACCATGT
*
81730132 TTGGGACATGG
61 CTGGGACATGG
81730143 CATCGTCATT
Statistics
Matches: 139, Mismatches: 20, Indels: 13
0.81 0.12 0.08
Matches are distributed among these distances:
92 37 0.27
93 1 0.01
94 48 0.35
95 15 0.11
96 9 0.06
97 29 0.21
ACGTcount: A:0.28, C:0.16, G:0.30, T:0.26
Consensus pattern (93 bp):
AGTGTAAGACATGTTTGGGACATGCATCAGCTACATGATAGAGCTACTATAAGACCATGTCTGGG
ACATGGAATTGGCACGGAGACAAGAGCC
Found at i:81730138 original size:47 final size:46
Alignment explanation
Indices: 81729879--81730147 Score: 157
Period size: 47 Copynumber: 5.7 Consensus size: 46
81729869 ATGTTTGTGT
* *
81729879 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACATTATGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTACA--GTGAGA
* * ** **
81729925 GCTACTGTAAGACCATGTCTGGGACATGGCATTGGTA-TTGAGACAAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCA-TCG-ACTACAG-TGAGA
* * *
81729973 GCCAGTGTAAGA-CATGTTTGGGACAT-GCATC-AGCTACA-TGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGA-CTACAGTGA-GA
* * * *
81730017 GTTAGTATAAGACCATGTCTGGGACATGGAATTGGCACGGATAC-GTG-GAA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCA-TCG-AC---TACAGTGAG-A
81730067 G-TCAGTGTAAGACCATGT-TCGGGACATGGCATCGACTTA-ATGTGAGA
1 GCT-AGTGTAAGACCATGTCT-GGGACATGGCATCGAC-TACA-GTGAGA
*
81730114 GCTAGTGTAAGACCATGTTTGGGACATGGCATCG
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCG
81730148 TCATTATACC
Statistics
Matches: 170, Mismatches: 28, Indels: 49
0.69 0.11 0.20
Matches are distributed among these distances:
43 2 0.01
44 10 0.06
45 16 0.09
46 18 0.11
47 62 0.36
48 22 0.13
49 10 0.06
50 25 0.15
51 5 0.03
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.26
Consensus pattern (46 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGACTACAGTGAGA
Found at i:81731363 original size:21 final size:22
Alignment explanation
Indices: 81731324--81731364 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
81731314 TTGATTTGGT
*
81731324 CACACGGGCGTGTTGCCCCTCC
1 CACACGGGCGTGATGCCCCTCC
81731346 CACACGGGCGT-ATGCCCCT
1 CACACGGGCGTGATGCCCCT
81731365 GTGTCTAGTG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.12, C:0.44, G:0.27, T:0.17
Consensus pattern (22 bp):
CACACGGGCGTGATGCCCCTCC
Found at i:81736129 original size:59 final size:60
Alignment explanation
Indices: 81736035--81736148 Score: 158
Period size: 59 Copynumber: 1.9 Consensus size: 60
81736025 TGATCCCAAA
* * * *
81736035 TATAAAAAATTCAACAAATTTAGCCCTCAATATTTACAAAATTTTTCATTTTAGTTCTAT
1 TATAAAAAAATCAACAAATTTAGCCCTCAACATTTACAAAATTTATCAATTTAGTTCTAT
* * *
81736095 TATAAAAAAAT-AATAAATTTGGCCTTCAACATTTACAAAATTTATCAATTTAGT
1 TATAAAAAAATCAACAAATTTAGCCCTCAACATTTACAAAATTTATCAATTTAGT
81736149 CCTAACTCTA
Statistics
Matches: 47, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
59 37 0.79
60 10 0.21
ACGTcount: A:0.43, C:0.13, G:0.04, T:0.39
Consensus pattern (60 bp):
TATAAAAAAATCAACAAATTTAGCCCTCAACATTTACAAAATTTATCAATTTAGTTCTAT
Found at i:81736162 original size:59 final size:59
Alignment explanation
Indices: 81736035--81736162 Score: 148
Period size: 59 Copynumber: 2.1 Consensus size: 59
81736025 TGATCCCAAA
* * * * * * *
81736035 TATAAAAAATTCAACAAATTTAGCCCTCAATATTTACAAAATTTTTCATTTTAGTTCTAT
1 TATAAAAAAAT-AATAAATTTAGCCCTCAACATTTACAAAATTTATCAATTTAGTCCTAC
* *
81736095 TATAAAAAAATAATAAATTTGGCCTTCAACATTTACAAAATTTATCAATTTAGTCCTAAC
1 TATAAAAAAATAATAAATTTAGCCCTCAACATTTACAAAATTTATCAATTTAGTCCT-AC
*
81736155 TCTAAAAA
1 TATAAAAA
81736163 TTTTTAAAAT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
59 39 0.68
60 18 0.32
ACGTcount: A:0.44, C:0.15, G:0.04, T:0.38
Consensus pattern (59 bp):
TATAAAAAAATAATAAATTTAGCCCTCAACATTTACAAAATTTATCAATTTAGTCCTAC
Found at i:81739991 original size:32 final size:32
Alignment explanation
Indices: 81739950--81740015 Score: 132
Period size: 32 Copynumber: 2.1 Consensus size: 32
81739940 CACAACACTA
81739950 GAGTTATCACACCAAATAACACCAAATAGTAG
1 GAGTTATCACACCAAATAACACCAAATAGTAG
81739982 GAGTTATCACACCAAATAACACCAAATAGTAG
1 GAGTTATCACACCAAATAACACCAAATAGTAG
81740014 GA
1 GA
81740016 ATATCAACGA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.47, C:0.21, G:0.14, T:0.18
Consensus pattern (32 bp):
GAGTTATCACACCAAATAACACCAAATAGTAG
Found at i:81740052 original size:13 final size:13
Alignment explanation
Indices: 81740034--81740058 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
81740024 GAAACAAAAA
81740034 TTCAGTTCTTGTT
1 TTCAGTTCTTGTT
81740047 TTCAGTTCTTGT
1 TTCAGTTCTTGT
81740059 AACAACAAGA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.16, G:0.16, T:0.60
Consensus pattern (13 bp):
TTCAGTTCTTGTT
Found at i:81745508 original size:64 final size:64
Alignment explanation
Indices: 81745434--81745558 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 64
81745424 TCATTCATAA
*
81745434 CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAACTCTTTGACATAAGCAT
1 CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAACTATTTGACATAAGCAT
* * ** * *
81745498 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATATTATCCTAATTATTTGGCATAAG
1 CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAACTATTTGACATAAG
81745559 TATAGATACA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.30, C:0.18, G:0.15, T:0.36
Consensus pattern (64 bp):
CACATATAGTTAGGAGCATTGGATTCATTTCGATCATAGCATCCTAACTATTTGACATAAGCAT
Found at i:81745747 original size:88 final size:88
Alignment explanation
Indices: 81745630--81746521 Score: 1086
Period size: 88 Copynumber: 10.1 Consensus size: 88
81745620 TGAATTCACT
* * ** * *
81745630 AGCCTTAGCCCCCTAAGCAGTAGGAAAACAGGCTAAAAATTGCAGATCTTATCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
81745695 AGTGGAGTAGATCGAAGATGGTG
66 AGTGGAGCAGATCAAAGACGGTG
* * * * * *
81745718 AGACTTAACCCCCTAACCAGTAGGGAAACAGGCTGGAAATTGCAGGTCTTATATCCCTAAACAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
81745783 AGTGGAGCGGATCGAAGACGGTG
66 AGTGGAGCAGATCAAAGACGGTG
* ** * * * *
81745806 AGCTTTAACATCTTAAGTAGTAGGGAAACAAGCTGGAAATTACAGATTTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * **
81745871 AGCGGAGCGGATTGAAGACGGTG
66 AGTGGAGCAGATCAAAGACGGTG
* ** * *
81745894 AGCTTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
81745959 AGTGGAGCGGATCAAAGATGTTG
66 AGTGGAGCAGATCAAAGACGGTG
* * *
81745982 AGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTACA-ATTCTTATCTCCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGA-TCTTATCTCCCTAAGCAG
*
81746046 TAGTGGAGCAGATCAAAGACAGTG
65 TAGTGGAGCAGATCAAAGACGGTG
* ** * * * *
81746070 GGATTTAACCACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
81746135 AGTGGAGCAAATCAAAGACGGTG
66 AGTGGAGCAGATCAAAGACGGTG
** * *
81746158 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
81746223 AGTGGAGCGGATCAAAGATGTTG
66 AGTGGAGCAGATCAAAGACGGTG
* * *
81746246 AGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTACA-ATTCTTATCTCCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGA-TCTTATCTCCCTAAGCAG
*
81746310 TAGTGGAGCAGATCAAAGACAGTG
65 TAGTGGAGCAGATCAAAGACGGTG
* ** * * * *
81746334 GGATTTAACCACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
81746399 AGTGGAGCAAATCAAAGACGGTG
66 AGTGGAGCAGATCAAAGACGGTG
** * *
81746422 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
81746487 AGTGGAGCGGATCAAAGATGTTG
66 AGTGGAGCAGATCAAAGACGGTG
81746510 AGCCTTAACCCC
1 AGCCTTAACCCC
81746522 TTTCTAAGCA
Statistics
Matches: 680, Mismatches: 120, Indels: 8
0.84 0.15 0.01
Matches are distributed among these distances:
87 2 0.00
88 676 0.99
89 2 0.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCAAAGACGGTG
Found at i:81746111 original size:264 final size:264
Alignment explanation
Indices: 81745630--81746523 Score: 1403
Period size: 264 Copynumber: 3.4 Consensus size: 264
81745620 TGAATTCACT
* * ** ** * * * *
81745630 AGCCTTAGCCCCCTAAGCAGTAGGAAAACAGGCTAAAAATTGCAGATCTTATCTCCCTAAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
** * * * * * * * *
81745695 AGTGGAGTAGATCGAAGATGGTGAGACTTAACCCCCTAACCAGTAGGGAAACAGGCTGGAAATTG
66 AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTA
** * * * * * * * * *
81745760 CAGGTCTTATATCCCTAAACAGTAGTGGAGCGGATCGAAGACGGTGAGCTTTAA-CATCTTAAGT
131 CAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCA-CCTAAGC
* * * * * ** **
81745824 AGTAGGGAAACAAGCTGGAAATTACAGATTTTATCTCCCTAAGCAGTAGCGGAGCGGATTGAAGA
195 AGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGA
81745889 CGGTG
260 CGGTG
*
81745894 AGCTTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
81745959 AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTA
66 AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTA
81746024 CAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCACCTAAGCA
131 CAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCACCTAAGCA
81746089 GTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGAC
196 GTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGAC
81746154 GGTG
261 GGTG
81746158 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
81746223 AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTA
66 AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTA
81746288 CAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCACCTAAGCA
131 CAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCACCTAAGCA
81746353 GTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGAC
196 GTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGAC
81746418 GGTG
261 GGTG
81746422 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
81746487 AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTT
66 AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTT
81746524 TCTAAGCATA
Statistics
Matches: 587, Mismatches: 42, Indels: 2
0.93 0.07 0.00
Matches are distributed among these distances:
264 585 1.00
265 2 0.00
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (264 bp):
AGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATTACAGATCTTGTCTCCCTAAGCAGT
AGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGCAGTAGAGAAACAGGCTGGAAACTA
CAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCACCTAAGCA
GTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGAC
GGTG
Found at i:81746129 original size:44 final size:44
Alignment explanation
Indices: 81746081--81746400 Score: 105
Period size: 44 Copynumber: 7.3 Consensus size: 44
81746071 GATTTAACCA
81746081 CCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTC
1 CCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTC
* * *** * * * *
81746125 CCTAAACAGTAGTGGAGCAA-AT-CAAAGACGGT-GAG-CCTTAACCC
1 CCTAAGCAGTAG-GGA--AACATGC-TAGAAATTACAGATCTTATCTC
* * * *
81746169 CCTAAGCAGTAGGGAAACA-GATTGGATATTACAGATCTTGTCTC
1 CCTAAGCAGTAGGGAAACATG-CTAGAAATTACAGATCTTATCTC
* ** * *
81746213 CCTAAGCAGTAGTGG-AGCGGAT-C-A-AAGATGTTGAG-CCTTAAC-C
1 CCTAAGCAGTAG-GGAAAC--ATGCTAGAA-AT-TACAGATCTTATCTC
* * * *
81746256 CCTTAAGCAGTAGAGAAACAGGCTGGAAACTACA-ATTCTTATCTC
1 CC-TAAGCAGTAGGGAAACATGCTAGAAATTACAGA-TCTTATCTC
* * * * * ** *
81746301 CCTAAGCAGTAGTGGAGCAGAT-CAAAGACAGT-GGGAT-TTAAC-C
1 CCTAAGCAGTAG-GGA-AACATGC-TAGAAATTACAGATCTTATCTC
81746344 ACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTC
1 -CCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTC
*
81746389 CCTAAACAGTAG
1 CCTAAGCAGTAG
81746401 TGGAGCAAAT
Statistics
Matches: 185, Mismatches: 59, Indels: 64
0.60 0.19 0.21
Matches are distributed among these distances:
41 2 0.01
42 13 0.07
43 21 0.11
44 112 0.61
45 21 0.11
46 14 0.08
47 2 0.01
ACGTcount: A:0.35, C:0.21, G:0.22, T:0.22
Consensus pattern (44 bp):
CCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTC
Found at i:81746551 original size:46 final size:47
Alignment explanation
Indices: 81746478--81746578 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 47
81746468 TCTTGTCTCC
* *
81746478 CTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTT
1 CTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAGCCTTAACCCCTTT
*
81746525 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCC---
1 CTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAGCCTTAACCCCTTT
81746568 CTAAGCAGTAG
1 CTAAGCAGTAG
81746579 GGAAACAGGT
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
43 7 0.14
44 3 0.06
46 33 0.66
47 7 0.14
ACGTcount: A:0.30, C:0.22, G:0.27, T:0.22
Consensus pattern (47 bp):
CTAAGCAGTAGTGGAGCAGATCAAAGATGGTGAGCCTTAACCCCTTT
Found at i:81746600 original size:222 final size:223
Alignment explanation
Indices: 81746302--81746726 Score: 602
Period size: 222 Copynumber: 1.9 Consensus size: 223
81746292 TCTTATCTCC
* * *
81746302 CTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCACCTAAGCAGTAGGGAAACATGC
1 CTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGACTTAACCACCTAAGCAGTAGGGAAACAGGC
81746367 TAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACC
66 TAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACC
* * * * * *
81746432 CCCTAAGCAGTAGGGAAACAGATTGGATATTACAGA-TCTTGTCTCCCTAAGCAGTAGTGGAGCG
131 CCCTAAGCAGTAGAGAAACAGACTGGAAACTACA-ATTCTTATCTCCCTAAGCAGTAGTGGAGCA
81746496 GATCAAAGATGTTGAGCCTTAACCCCTTT
195 GATCAAAGATGTTGAGCCTTAACCCCTTT
* ** * * *
81746525 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGT
1 CTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGACTTAACCACCTAAGCAGTAGGGAAACAGGC
* * * * ** * *
81746589 TGGATATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACC
66 TAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACC
* *
81746654 CCTTAAGCAGTAGAGAAACAGGCTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAG
131 CCCTAAGCAGTAGAGAAACAGACTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAG
81746719 ATCAAAGA
196 ATCAAAGA
81746727 CAGTGGGATT
Statistics
Matches: 176, Mismatches: 25, Indels: 3
0.86 0.12 0.01
Matches are distributed among these distances:
221 1 0.01
222 168 0.95
223 7 0.04
ACGTcount: A:0.33, C:0.20, G:0.24, T:0.22
Consensus pattern (223 bp):
CTAAGCAGTAGTGGAGCAGATCAAAGACAGTGAGACTTAACCACCTAAGCAGTAGGGAAACAGGC
TAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACC
CCCTAAGCAGTAGAGAAACAGACTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAG
ATCAAAGATGTTGAGCCTTAACCCCTTT
Found at i:81746639 original size:88 final size:88
Alignment explanation
Indices: 81746525--81749593 Score: 4353
Period size: 88 Copynumber: 35.0 Consensus size: 88
81746515 TAACCCCTTT
* *
81746525 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGT
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* *
81746589 TGGATATTACAGATCTTGTCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * * * *
81746612 CTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGCAGTAGAGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81746677 TGGAAACTACA-ATTCTTATCTCC
66 TGGAAATTACAGA-TCTTATCTCC
* * * ** * *
81746700 CTAAGCAGTAGTGGAGCAGATCAAAGACAGTGGGATTTAACCACCTAAGCAGTAGGGAAACATGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81746765 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * *
81746788 CTAAACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGT
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81746853 TGGAAATTGCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* ** * * *
81746876 TTAAGCAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCTTAGGTAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
81746941 TGGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81746964 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCTTTAACCCCCTAAGCAGTAGGGAAATATGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747029 TGGAAATTCCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * *
81747052 CTAAGCAGTAGTGGAGCAAATCAAACACGGTGAGCCTTAACCCCCTAAGCAGTAGGAAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
81747117 TGGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* *
81747140 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGT
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747204 TGGAAATTGCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* ** * * *
81747227 TTAAGCAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCTTAGGTAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747292 TGGAAATTACAGATCTTATCTCT
66 TGGAAATTACAGATCTTATCTCC
* *
81747315 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGT
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747379 TGGAAATTGCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* ** * * *
81747402 TTAAGCAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCTTAGGTAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747467 TGGAAATTACAGATCTTATCTCT
66 TGGAAATTACAGATCTTATCTCC
* *
81747490 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGT
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747554 TGGAAATTGCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* ** * * *
81747577 TTAAGCAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCTTAGGTAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747642 TGGAAATTACAGATCTTATCTCT
66 TGGAAATTACAGATCTTATCTCC
* *
81747665 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGT
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747729 TGGAAATTGCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* ** * * *
81747752 TTAAGCAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCTTAGGTAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747817 TGGAAATTACAGATCTTATCTCT
66 TGGAAATTACAGATCTTATCTCC
*
81747840 CTAAGCA-TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* *
81747904 TGGAAATTACAAATCTTATCTTC
66 TGGAAATTACAGATCTTATCTCC
** * * * *
81747927 CTAAGCAGTAGTGGAGTGGAACGAAGACGTTGAGCCTTAATCCCCTAAGCAGTAGGGAAATAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81747992 TGGAAACTACA-ATTCTTATCTCC
66 TGGAAATTACAGA-TCTTATCTCC
* *
81748015 CTAAGCAGTAGTGGAGCAGATCGAAGACGGCGAGCTTTAACCCCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* *
81748080 TAGAAATTACATATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* *
81748103 CTAAGCAGTAGTGGAGCAGATCGAAGACGTTGAGCCTTAACACCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748168 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81748191 CTAAGCAGTAGTGGAGCAGATCAAAGACGTTGAGCCTTAACACCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748256 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81748279 CTAAGCAGTAGTGGAGCAGATCAAAGACGTTGAGCCTTAACACCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748344 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81748367 CTAAGCAGTAGTGGAGCAGATCAAAGACGTTGAGCCTTAACACCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748432 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81748455 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCATAAGCAGTAGGGAAACAGAC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* * *
81748520 T-GAAGATTATAGATTTTATCTCT
66 TGGAA-ATTACAGATCTTATCTCC
* * * *
81748543 TTGAGAAGTAGTAGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
* *
81748608 TGGAAATTACAAATCTTATCTTC
66 TGGAAATTACAGATCTTATCTCC
** * * * *
81748631 CTAAGCAGTAGTGGAGTGGAACGAAGACGTTGAGCCTTAATCCCCTAAGCAGTAGGGAAATAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748696 TGGAAACTACA-ATTCTTATCTCC
66 TGGAAATTACAGA-TCTTATCTCC
* * * * * *
81748719 CTAAGCAGTAGTGAAGCAGATGGAAGATGATGAGCCCTAAACCCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748784 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81748807 CTAAGCAGTAGTGGAGCAGATCAAAGACGTTGAGCCTTAACACCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748872 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81748895 CTAAGCAGTAGTGGAGCAGATCAAAGACGTTGAGCCTTAACACCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81748960 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * *
81748983 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCTCTAAGCAGTAGGGAAACAGAC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81749048 T-GAAGATTATAGATCTTATCTCC
66 TGGAA-ATTACAGATCTTATCTCC
* * * * * *
81749071 ATGAGAAGTAGTAGAGCAGATCGAAGACGGTAAGCCTTAAGCCCCTAAGCAGT-GGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
81749135 TGGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * * * *
81749158 CTAAGCAGTAGTGGAGCGGATCGAAGACGGTGAGCTTTAACCCCCTAAGCAATAAGAAAATAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81749223 TGGAAATTGCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * *
81749246 CTAAGCAGTAGTAGAGCAAATCGAACACGGTGAGCCTTAATCCCCTAAGCAGTAGGGAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81749311 TAGAAATTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * * * *
81749334 CTAAGCAGTAGTGGAGCGGATCGAAGACGGTGAGCTTTAACCCCCTAAGCAATAAGAAAATAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81749399 TGGAAATTGCAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * * **
81749422 CTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTAACCCCCTAAGTAATAGAAAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81749487 TGGAAACTACAGATCTTATCTCC
66 TGGAAATTACAGATCTTATCTCC
* * * * **
81749510 CTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTAACCCCCTAAGTAATAGAAAAACAGGC
1 CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
*
81749575 TGGAAACTACAGATCTTAT
66 TGGAAATTACAGATCTTAT
81749594 AAGCAGTAAG
Statistics
Matches: 2676, Mismatches: 289, Indels: 33
0.89 0.10 0.01
Matches are distributed among these distances:
87 476 0.18
88 2194 0.82
89 6 0.00
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (88 bp):
CTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGC
TGGAAATTACAGATCTTATCTCC
Found at i:81746658 original size:398 final size:398
Alignment explanation
Indices: 81746134--81746921 Score: 1459
Period size: 398 Copynumber: 2.0 Consensus size: 398
81746124 CCCTAAACAG
81746134 TAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATT
1 TAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATT
81746199 ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGC
66 ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGC
81746264 AGTAGAGAAACAGGCTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
131 AGTAGAGAAACAGGCTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
81746329 CAGTGGGATTTAACCACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAA
196 CAGTGGGATTTAACCACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAA
81746394 ACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGA
261 ACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGA
* * * *
81746459 TATTACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTT
326 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCAAAGACGGTGAGCCTTAACCCCTT
81746524 TCTAAGCA
391 TCTAAGCA
* * * *
81746532 TAGTGGAGCAGATCGAAGATGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGTTGGATATT
1 TAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATT
81746597 ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGC
66 ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGC
81746662 AGTAGAGAAACAGGCTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
131 AGTAGAGAAACAGGCTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
81746727 CAGTGGGATTTAACCACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAA
196 CAGTGGGATTTAACCACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAA
*
81746792 ACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGTTGGA
261 ACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGA
* * * *
81746857 AATTGCAGATCTTATCTCCTTAAGCAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCTT
326 AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCAAAGACGGTGAGCCTTAACCCCTT
81746922 AGGTAGTAGG
Statistics
Matches: 377, Mismatches: 13, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
398 377 1.00
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.22
Consensus pattern (398 bp):
TAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGATATT
ACAGATCTTGTCTCCCTAAGCAGTAGTGGAGCGGATCAAAGATGTTGAGCCTTAACCCCTTAAGC
AGTAGAGAAACAGGCTGGAAACTACAATTCTTATCTCCCTAAGCAGTAGTGGAGCAGATCAAAGA
CAGTGGGATTTAACCACCTAAGCAGTAGGGAAACATGCTAGAAATTACAGATCTTATCTCCCTAA
ACAGTAGTGGAGCAAATCAAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGATTGGA
AATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCAAAGACGGTGAGCCTTAACCCCTT
TCTAAGCA
Found at i:81748017 original size:44 final size:44
Alignment explanation
Indices: 81747881--81748201 Score: 122
Period size: 44 Copynumber: 7.3 Consensus size: 44
81747871 AGCCTTAACC
* *
81747881 CCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAAATCTTATCT
1 CCCTAAGCAGTAGGGAAATAGGCTGGAAACTACAAATCTTATCT
* * *** ** **
81747925 TCCTAAGCAGTAGTGG-AGT-GGAACGAAGACGT-TGAGCCTTAATC-
1 CCCTAAGCAGTAG-GGAAATAGGCTGGAA-AC-TACAAATCTT-ATCT
*
81747969 CCCTAAGCAGTAGGGAAATAGGCTGGAAACTACAATTCTTATCT
1 CCCTAAGCAGTAGGGAAATAGGCTGGAAACTACAAATCTTATCT
** * * ** * * * *
81748013 CCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGGC-GAGCTTTAACC
1 CCCTAAGCAGTAG-GGAAATAGGCTGGAA-ACTACAAATC-TTATCT
* * * *
81748057 CCCTAAGCAGTAGGGAAACAGGCTAGAAATTACATATCTTATCT
1 CCCTAAGCAGTAGGGAAATAGGCTGGAAACTACAAATCTTATCT
** * * ** ** * *
81748101 CCCTAAGCAGTAGTGG-AGCA-GATCGAAGACGT-TGAGCCTTAACA
1 CCCTAAGCAGTAG-GGAAATAGGCTGGAA-AC-TACAAATCTTATCT
* * * *
81748145 CCCTAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCT
1 CCCTAAGCAGTAGGGAAATAGGCTGGAAACTACAAATCTTATCT
81748189 CCCTAAGCAGTAG
1 CCCTAAGCAGTAG
81748202 TGGAGCAGAT
Statistics
Matches: 194, Mismatches: 63, Indels: 40
0.65 0.21 0.13
Matches are distributed among these distances:
43 27 0.14
44 139 0.72
45 28 0.14
ACGTcount: A:0.33, C:0.21, G:0.24, T:0.21
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAATAGGCTGGAAACTACAAATCTTATCT
Found at i:81749637 original size:126 final size:126
Alignment explanation
Indices: 81749479--81749719 Score: 365
Period size: 126 Copynumber: 1.9 Consensus size: 126
81749469 AGTAATAGAA
* * *
81749479 AAACAGGCTGGAAACTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAG
1 AAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAG
*
81749544 CCTTAACCCCCTAAGTAATAGAAAAACAGGCTGGAAACTACAGATCTTATAAGCAGTAAGG
66 CCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTACAGATCTTATAAGCAGTAAGG
* * *
81749605 AAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATTGAAGACGGTGAG
1 AAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAG
* * * * * *
81749670 CTTTAACCCCTTAAGCAGTAGGAAAATAGGCTGGAAATTACAGATCTTAT
66 CCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTACAGATCTTAT
81749720 CTCCCTAAGC
Statistics
Matches: 102, Mismatches: 13, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
126 102 1.00
ACGTcount: A:0.37, C:0.19, G:0.22, T:0.22
Consensus pattern (126 bp):
AAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAG
CCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTACAGATCTTATAAGCAGTAAGG
Found at i:81749704 original size:214 final size:214
Alignment explanation
Indices: 81749379--81749807 Score: 615
Period size: 214 Copynumber: 2.0 Consensus size: 214
81749369 TTTAACCCCC
* * * * * *
81749379 TAAGCAATAAGAAAATAGGCTGGAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATC
1 TAAGCAATAAGAAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
81749444 GAAGACAGTGAGCCTTAACCCCCTAAGTAATAGAAAAACAGGCTGGAAACTACAGATCTTATCTC
66 GAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTACAGATCTTATCTC
* *
81749509 CCTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTAACCCCCTAAGTAATAGAAAAACAGG
131 CCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGG
*
81749574 CTGGAAACTACAGATCTTA
196 CTAGAAACTACAGATCTTA
* * * *
81749593 TAAGCAGTAAGGAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATT
1 TAAGCAATAAGAAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * * * * * *
81749658 GAAGACGGTGAGCTTTAACCCCTTAAGCAGTAGGAAAATAGGCTGGAAATTACAGATCTTATCTC
66 GAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTACAGATCTTATCTC
* * * **
81749723 CCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGG
131 CCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGG
*
81749788 CTAGAAATTACAGATCTTA
196 CTAGAAACTACAGATCTTA
81749807 T
1 T
81749808 CTCCCTGAGA
Statistics
Matches: 188, Mismatches: 27, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
214 188 1.00
ACGTcount: A:0.36, C:0.20, G:0.23, T:0.21
Consensus pattern (214 bp):
TAAGCAATAAGAAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
GAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTACAGATCTTATCTC
CCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGG
CTAGAAACTACAGATCTTA
Found at i:81749718 original size:88 final size:88
Alignment explanation
Indices: 81749593--81750009 Score: 563
Period size: 88 Copynumber: 4.8 Consensus size: 88
81749583 ACAGATCTTA
* * * *
81749593 TAAGCAGTAAGGAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATT
1 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
* * *
81749658 GAAGACGGTGAGCTTTAACCCCT
66 GAAGACGGTGAGCCTTATCCCCC
* * * *
81749681 TAAGCAGTAGGAAAATAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
1 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
81749746 GAAGACGGTGAGCCTTATCCCCC
66 GAAGACGGTGAGCCTTATCCCCC
* * * *
81749769 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTGAGAAGTAGTAGAGCAGATC
1 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
*
81749834 GAAGATGGTGAGCCTTATCCCCC
66 GAAGACGGTGAGCCTTATCCCCC
*
81749857 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATT
1 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
* *
81749922 AAAGAC--T-AGCCTTATCTCCC
66 GAAGACGGTGAGCCTTATCCCCC
* * * * * * *
81749942 TAAGTAGTAGGGAAACGGGCT-GAATATTACAAACCATATCTCCCTAAGCAGTACTGGAGTAGAT
1 TAAGCAGTAGGGAAACAGGCTAGAA-ATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGAT
81750006 TGAA
65 TGAA
81750010 ACAAAAATTC
Statistics
Matches: 293, Mismatches: 35, Indels: 5
0.88 0.11 0.02
Matches are distributed among these distances:
84 3 0.01
85 67 0.23
86 1 0.00
88 222 0.76
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (88 bp):
TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATT
GAAGACGGTGAGCCTTATCCCCC
Found at i:81749837 original size:302 final size:302
Alignment explanation
Indices: 81749291--81749895 Score: 922
Period size: 302 Copynumber: 2.0 Consensus size: 302
81749281 CTTAATCCCC
* * * *
81749291 TAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATC
1 TAAGCAGTAAGGAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
*
81749356 GAAGACGGTGAGCTTTAACCCCCTAAGCAATAAGAAAATAGGCTGGAAATTGCAGATCTTATCTC
66 GAAGACGGTGAGCTTTAACCCCCTAAGCAATAAGAAAATAGGCTGGAAATTACAGATCTTATCTC
* *
81749421 CCTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTAACCCCCTAAGTAATAGAAAAACAGG
131 CCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGG
* * * *
81749486 CTGGAAACTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGACAGTGAGCCTTAAC
196 CTAGAAACTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACAGTGAGCCTTAAC
* *
81749551 CCCCTAAGTAATAGAAAAACAGGCTGGAAACTACAGATCTTA
261 CCCCTAAGCAATAGAAAAACAGGCTAGAAACTACAGATCTTA
* *
81749593 TAAGCAGTAAGGAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGTAGATT
1 TAAGCAGTAAGGAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
* * *
81749658 GAAGACGGTGAGCTTTAACCCCTTAAGCAGTAGGAAAATAGGCTGGAAATTACAGATCTTATCTC
66 GAAGACGGTGAGCTTTAACCCCCTAAGCAATAAGAAAATAGGCTGGAAATTACAGATCTTATCTC
* * * **
81749723 CCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGG
131 CCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGG
* * ** *
81749788 CTAGAAATTACAGATCTTATCTCCCTGAGAAGTAGTAGAGCAGATCGAAGATGGTGAGCCTTATC
196 CTAGAAACTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACAGTGAGCCTTAAC
* ** *
81749853 CCCCTAAGCAGTAGGGAAACAGGCTAGAAATTACAGATCTTA
261 CCCCTAAGCAATAGAAAAACAGGCTAGAAACTACAGATCTTA
81749895 T
1 T
81749896 CTCCCTAAAC
Statistics
Matches: 271, Mismatches: 32, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
302 271 1.00
ACGTcount: A:0.35, C:0.20, G:0.24, T:0.21
Consensus pattern (302 bp):
TAAGCAGTAAGGAAACAGGCTAGAAACTACAAATCTTATCTCCCTAAGCAGTAGTGGAGCAGATC
GAAGACGGTGAGCTTTAACCCCCTAAGCAATAAGAAAATAGGCTGGAAATTACAGATCTTATCTC
CCTAAGCAGTAGTGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGG
CTAGAAACTACAGATCTTATCTCCCTAAGAAGTAGTAGAGCAGATCGAAGACAGTGAGCCTTAAC
CCCCTAAGCAATAGAAAAACAGGCTAGAAACTACAGATCTTA
Found at i:81750141 original size:57 final size:57
Alignment explanation
Indices: 81750053--81750166 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
81750043 GTTAAAGCGA
*
81750053 GGCTACCTAAAGAAAGGGAGCGTCAAGAAGTCAAGACTCAGCAAGACCAGGCAAAAT
1 GGCTACCTAAAGAAAGAGAGCGTCAAGAAGTCAAGACTCAGCAAGACCAGGCAAAAT
*
81750110 GGCTACCTAAAGAAAGAGAGCGTCAAGAAGTCAAGACTCAGCAAGACCGGGCAAAAT
1 GGCTACCTAAAGAAAGAGAGCGTCAAGAAGTCAAGACTCAGCAAGACCAGGCAAAAT
81750167 TAGCCTTTTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.42, C:0.21, G:0.26, T:0.11
Consensus pattern (57 bp):
GGCTACCTAAAGAAAGAGAGCGTCAAGAAGTCAAGACTCAGCAAGACCAGGCAAAAT
Found at i:81750317 original size:13 final size:13
Alignment explanation
Indices: 81750299--81750362 Score: 96
Period size: 13 Copynumber: 5.0 Consensus size: 13
81750289 CAACCCAAAT
81750299 ACCACCCCACTAA
1 ACCACCCCACTAA
81750312 ACCACCCCACTAA
1 ACCACCCCACTAA
81750325 ACCGA--CCACTAA
1 ACC-ACCCCACTAA
*
81750337 AACACCCCACTAA
1 ACCACCCCACTAA
81750350 ACCACCCCACTAA
1 ACCACCCCACTAA
81750363 CTCCATCATT
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
11 1 0.02
12 9 0.20
13 35 0.76
14 1 0.02
ACGTcount: A:0.41, C:0.50, G:0.02, T:0.08
Consensus pattern (13 bp):
ACCACCCCACTAA
Found at i:81750320 original size:25 final size:25
Alignment explanation
Indices: 81750299--81750362 Score: 78
Period size: 25 Copynumber: 2.5 Consensus size: 25
81750289 CAACCCAAAT
*
81750299 ACCACCCCACTAAACCACCCCACTAA
1 ACCACCCCACTAAAACACCCCAC-AA
81750325 ACCGA--CCACTAAAACACCCCACTAA
1 ACC-ACCCCACTAAAACACCCCAC-AA
81750350 ACCACCCCACTAA
1 ACCACCCCACTAA
81750363 CTCCATCATT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
24 1 0.03
25 22 0.65
26 10 0.29
27 1 0.03
ACGTcount: A:0.41, C:0.50, G:0.02, T:0.08
Consensus pattern (25 bp):
ACCACCCCACTAAAACACCCCACAA
Found at i:81750760 original size:3 final size:3
Alignment explanation
Indices: 81750742--81750935 Score: 57
Period size: 3 Copynumber: 65.0 Consensus size: 3
81750732 GGGGAGAGTG
* * * *
81750742 TTA TTT TTA ATA TTA TTA TTA TTA TTA TTA CTA CTT- TTA CTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA TTA TTA
* * * * *
81750787 TT- CTA TATA CTT- TTA CTA TT- TTCA TTT TTA TTA TTA TTA GTA GTAA
1 TTA TTA T-TA -TTA TTA TTA TTA TT-A TTA TTA TTA TTA TTA TTA -TTA
* * * * *
81750833 CGTA ATA GTA TTT TTA TTA TT- TTA TTA TTA TT- TTCA GCTTT TTA TTA
1 -TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT-A --TTA TTA TTA
* * * * *
81750880 CTA TTA TTA TTA TTA TTA ATA -TA GTG TTA TT- TTC TT- TTA TT- TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
*
81750924 TTA TCA TTA TTA
1 TTA TTA TTA TTA
81750936 ACATATCATT
Statistics
Matches: 138, Mismatches: 35, Indels: 36
0.66 0.17 0.17
Matches are distributed among these distances:
2 19 0.14
3 108 0.78
4 8 0.06
5 1 0.01
6 2 0.01
ACGTcount: A:0.28, C:0.07, G:0.04, T:0.61
Consensus pattern (3 bp):
TTA
Found at i:81750785 original size:21 final size:21
Alignment explanation
Indices: 81750761--81750806 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
81750751 ATATTATTAT
81750761 TATTATTAT-TACTACTTTTAC
1 TATTATTATATA-TACTTTTAC
*
81750782 TATTATTCTATATACTTTTAC
1 TATTATTATATATACTTTTAC
81750803 TATT
1 TATT
81750807 TTCATTTTTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 21 0.91
22 2 0.09
ACGTcount: A:0.28, C:0.13, G:0.00, T:0.59
Consensus pattern (21 bp):
TATTATTATATATACTTTTAC
Found at i:81750866 original size:20 final size:20
Alignment explanation
Indices: 81750841--81750893 Score: 54
Period size: 20 Copynumber: 2.6 Consensus size: 20
81750831 AACGTAATAG
*
81750841 TATTTTTATTATTTTATTAT
1 TATTTTTATTATTTTATTAC
* *
81750861 TATTTTCAGCT-TTTTATTAC
1 TATTTTTA-TTATTTTATTAC
*
81750881 TATTATTATTATT
1 TATTTTTATTATT
81750894 ATTAATATAG
Statistics
Matches: 25, Mismatches: 6, Indels: 4
0.71 0.17 0.11
Matches are distributed among these distances:
19 1 0.04
20 23 0.92
21 1 0.04
ACGTcount: A:0.25, C:0.06, G:0.02, T:0.68
Consensus pattern (20 bp):
TATTTTTATTATTTTATTAC
Found at i:81751021 original size:11 final size:11
Alignment explanation
Indices: 81751005--81751042 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
81750995 ATTTTCTACT
81751005 TTATTACTGTA
1 TTATTACTGTA
81751016 TTATTAC--TA
1 TTATTACTGTA
*
81751025 TTATTACTGTC
1 TTATTACTGTA
81751036 TTATTAC
1 TTATTAC
81751043 CAAACTAATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 9 0.38
11 15 0.62
ACGTcount: A:0.26, C:0.13, G:0.05, T:0.55
Consensus pattern (11 bp):
TTATTACTGTA
Found at i:81751028 original size:20 final size:19
Alignment explanation
Indices: 81751001--81751042 Score: 66
Period size: 20 Copynumber: 2.2 Consensus size: 19
81750991 TATTATTTTC
81751001 TACTTTATTACTGTATTAT
1 TACTTTATTACTGTATTAT
*
81751020 TACTATTATTACTGTCTTAT
1 TACT-TTATTACTGTATTAT
81751040 TAC
1 TAC
81751043 CAAACTAATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
19 4 0.19
20 17 0.81
ACGTcount: A:0.26, C:0.14, G:0.05, T:0.55
Consensus pattern (19 bp):
TACTTTATTACTGTATTAT
Found at i:81753227 original size:24 final size:24
Alignment explanation
Indices: 81753180--81753229 Score: 66
Period size: 24 Copynumber: 2.1 Consensus size: 24
81753170 TTACTTTCTT
*
81753180 TTGCATTCATTCCATGCATTTGCA
1 TTGCATTCATTCCATGCATGTGCA
*
81753204 TTGCATTGCATTGCAT-CATGTGCA
1 TTGCATT-CATTCCATGCATGTGCA
81753228 TT
1 TT
81753230 AAACTTCACA
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 16 0.70
25 7 0.30
ACGTcount: A:0.20, C:0.22, G:0.16, T:0.42
Consensus pattern (24 bp):
TTGCATTCATTCCATGCATGTGCA
Found at i:81757695 original size:64 final size:64
Alignment explanation
Indices: 81757622--81757746 Score: 187
Period size: 64 Copynumber: 2.0 Consensus size: 64
81757612 TCATTCATAA
*
81757622 CACATCTAGTTAGGAGCATTGGATGCATTTCGATCATAGCATCCTAACTCTTTGACATAAGCAT
1 CACATCTAGTTAGGAGCATTGGATGCATTTCGATCATAGCATCCTAACTATTTGACATAAGCAT
* * ** * *
81757686 CACATCTAGTTAGGAGCATTTGATTCATTTCGATCATATTATCCTAATTATTTGGCATAAG
1 CACATCTAGTTAGGAGCATTGGATGCATTTCGATCATAGCATCCTAACTATTTGACATAAG
81757747 TATAGATACA
Statistics
Matches: 54, Mismatches: 7, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
64 54 1.00
ACGTcount: A:0.30, C:0.19, G:0.16, T:0.35
Consensus pattern (64 bp):
CACATCTAGTTAGGAGCATTGGATGCATTTCGATCATAGCATCCTAACTATTTGACATAAGCAT
Found at i:81757878 original size:44 final size:44
Alignment explanation
Indices: 81757828--81757972 Score: 118
Period size: 44 Copynumber: 3.3 Consensus size: 44
81757818 AGCCTTAACC
81757828 CCCTAAGCAGTAGGGAAACAAGCTGAAAATTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGAAACAAGCTGAAAATTGCAGATCTTATCT
** * ** * * *
81757872 CCCTAAGCAGTAGCGG--AGTAGATCGAAGACGGTG-AG-CCTTAACC
1 CCCTAAGCAGTAG-GGAAACAAGCT-GAA-A-ATTGCAGATCTTATCT
* *
81757916 CCCTAAGCAGTAGGGAAACAGGCTGGAAATTGCAGATCTTATCT
1 CCCTAAGCAGTAGGGAAACAAGCTGAAAATTGCAGATCTTATCT
* *
81757960 CCCGAATCAGTAG
1 CCCTAAGCAGTAG
81757973 CGGAGTAGAG
Statistics
Matches: 73, Mismatches: 20, Indels: 16
0.67 0.18 0.15
Matches are distributed among these distances:
42 2 0.03
43 9 0.12
44 52 0.71
45 8 0.11
46 2 0.03
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.20
Consensus pattern (44 bp):
CCCTAAGCAGTAGGGAAACAAGCTGAAAATTGCAGATCTTATCT
Found at i:81757971 original size:88 final size:88
Alignment explanation
Indices: 81757818--81758682 Score: 1078
Period size: 88 Copynumber: 9.9 Consensus size: 88
81757808 TGAATTCACT
* * *
81757818 AGCCTTAACCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTGCAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
81757883 AGCGGAGTAGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * *
81757906 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTGCAGATCTTATCTCCCGAATCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * *
81757971 AGCGGAGTAGAGCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* ** * *
81757994 AGCCTTAACCTCCTAATTAGTAGGGAAATAGGCTGGAAATTGCAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
*
81758059 AGTGGAGCGGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* ** * *
81758082 AGCCTTAACCTCCTAATTAGTAGGGAAATAGGCTGGAAATTGCAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
81758147 AGTGGAGCAAATCGAAGACGATG
66 AGTGGAGCAGATCGAAGACGGTG
* * * *
81758170 AGCCTTAA-CCCTTAAGTAGTAGGGAAACAGGCTAGAAATTACAGATGTTATCTCCCTAAGCAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
81758234 AGTGGAGCGGATCGAAGACAGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * ** * *
81758257 AGCCTTAACCCCCTAAGTAATAGAAAAACAGGCTGGAAACTACAGATCTTATCTCCCTAAGCAAT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
81758322 AGTGGAGCAGATCGAAGACGGTG
66 AGTGGAGCAGATCGAAGACGGTG
* * * * *
81758345 AGCTTTAACCCCCTAAGTAGTAGGGAAACAGGCTGGAAATTATAGATCTTATCTCTCTAAGTAGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* *
81758410 AGTGGAGCAGGA-CAAAGACAGTG
66 AGTGGAGCA-GATCGAAGACGGTG
* * * * *
81758433 AGCCTTATCCCCCTAAGCAGTAGGGAAACAGACT-GAAGATTATAGATCTTATCTCCCTGAGAAG
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAA-ATTACAGATCTTATCTCCCTAAGCAG
81758497 TAGTGGAGCAGATCGAAGACGGTG
65 TAGTGGAGCAGATCGAAGACGGTG
* * * * *
81758521 AGCCTTATCCCCCGAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCTTAAACTGT
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
* * **
81758586 AGCGGAGTAGATTAAAGAC--T-
66 AGTGGAGCAGATCGAAGACGGTG
* * * * * *
81758606 AGCCTTATCTCTCTAAGCAGTAGGGAAACGGGCT-GAATATTACAAATCATATCTCCCTAAGCAG
1 AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAA-ATTACAGATCTTATCTCCCTAAGCAG
*
81758670 TAGTGGAGTAGAT
65 TAGTGGAGCAGAT
81758683 TAAAACAAAA
Statistics
Matches: 690, Mismatches: 81, Indels: 15
0.88 0.10 0.02
Matches are distributed among these distances:
84 3 0.00
85 63 0.09
86 1 0.00
87 81 0.12
88 537 0.78
89 5 0.01
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (88 bp):
AGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGT
AGTGGAGCAGATCGAAGACGGTG
Found at i:81758482 original size:351 final size:350
Alignment explanation
Indices: 81757818--81758597 Score: 1042
Period size: 351 Copynumber: 2.2 Consensus size: 350
81757808 TGAATTCACT
* *
81757818 AGCCTTAACCCCCTAAGCAGTAGGGAAACAAGCTGAAAATTGCAGATCTTATCTCCCTAAGCAGT
1 AGCCTTAA-CCCCTAAGCAGTAGGGAAACAGGCTG-AAATTACAGATCTTATCTCCCTAAGCAGT
* * * ** * *
81757883 AGCGGAGTAGATCGAAGACGGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGGCTGGAAATTG
64 AGCGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTA
* * * * *
81757948 CAGATCTTATCTCCCGAATCAGTAGCGGAGTAGAGCGAAGACGGTGAGCCTTAACCTCCTAATTA
129 CAGATCTTATCTCCCGAAGCAATAGCGGAGCAGAGCGAAGACGGTGAGCCTTAACCCCCTAAGTA
* * *
81758013 GTAGGGAAATAGGCTGGAAATTGCAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCGAAGAC
194 GTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCAAAGAC
* * ** * * *
81758078 GGTGAGCCTTAACCTCCTAATTAGTAGGGAAATAGGCTGGAAATTGCAGATCTTATCTCCCTAAG
259 AGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGACTGGAAATTACAGATCTTATCTCCCTAAG
*
81758143 CAGTAGTGGAGCAAATCGAAGACGATG
324 AAGTAGTGGAGCAAATCGAAGACGATG
* * *
81758170 AGCCTTAACCCTTAAGTAGTAGGGAAACAGGCTAGAAATTACAGATGTTATCTCCCTAAGCAGTA
1 AGCCTTAACCCCTAAGCAGTAGGGAAACAGGCT-GAAATTACAGATCTTATCTCCCTAAGCAGTA
* * *
81758235 GTGGAGCGGATCGAAGACAGTGAGCCTTAACCCCCTAAGTAATAGAAAAACAGGCTGGAAACTAC
65 GCGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTAC
* * * *
81758300 AGATCTTATCTCCCTAAGCAATAGTGGAGCAGATCGAAGACGGTGAGCTTTAACCCCCTAAGTAG
130 AGATCTTATCTCCCGAAGCAATAGCGGAGCAGAGCGAAGACGGTGAGCCTTAACCCCCTAAGTAG
* * *
81758365 TAGGGAAACAGGCTGGAAATTATAGATCTTATCTCTCTAAGTAGTAGTGGAGCAGGA-CAAAGAC
195 TAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGC-GGATCAAAGAC
* * *
81758429 AGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGACT-GAAGATTATAGATCTTATCTCCCTGA
259 AGTGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGACTGGAA-ATTACAGATCTTATCTCCCTAA
* *
81758493 GAAGTAGTGGAGCAGATCGAAGACGGTG
323 GAAGTAGTGGAGCAAATCGAAGACGATG
* * * * *
81758521 AGCCTTATCCCCCGAAGCAGTAGGGAAACAGGCTGGAAATTACAGATCTTATCTCCTTAAACTGT
1 AGCCTTA-ACCCCTAAGCAGTAGGGAAACAGGCT-GAAATTACAGATCTTATCTCCCTAAGCAGT
*
81758586 AGCGGAGTAGAT
64 AGCGGAGCAGAT
81758598 TAAAGACTAG
Statistics
Matches: 369, Mismatches: 55, Indels: 8
0.85 0.13 0.02
Matches are distributed among these distances:
350 3 0.01
351 297 0.80
352 69 0.19
ACGTcount: A:0.33, C:0.21, G:0.25, T:0.22
Consensus pattern (350 bp):
AGCCTTAACCCCTAAGCAGTAGGGAAACAGGCTGAAATTACAGATCTTATCTCCCTAAGCAGTAG
CGGAGCAGATCGAAGACAGTGAGCCTTAACCCCCTAAGCAATAGAAAAACAGGCTGGAAACTACA
GATCTTATCTCCCGAAGCAATAGCGGAGCAGAGCGAAGACGGTGAGCCTTAACCCCCTAAGTAGT
AGGGAAACAGGCTGGAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCGGATCAAAGACAG
TGAGCCTTAACCCCCTAAGCAGTAGGGAAACAGACTGGAAATTACAGATCTTATCTCCCTAAGAA
GTAGTGGAGCAAATCGAAGACGATG
Found at i:81758484 original size:44 final size:45
Alignment explanation
Indices: 81758353--81758573 Score: 122
Period size: 44 Copynumber: 5.0 Consensus size: 45
81758343 TGAGCTTTAA
* *
81758353 CCCCCTAAGTAGTAGGGAAACAGGCTGGAA-ATTATAGATCTTAT
1 CCCCCTAAGCAGTAGGGAAACAGACTGGAAGATTATAGATCTTAT
* * * * * * *
81758397 CTCTCTAAGTAGTAGTGG-AGCAGGAC--AAAGA-CAGT-GAGCCTTAT
1 CCCCCTAAGCAGTAG-GGAAACA-GACTGGAAGATTA-TAGA-TCTTAT
81758441 CCCCCTAAGCAGTAGGGAAACAGACT-GAAGATTATAGATCTTAT
1 CCCCCTAAGCAGTAGGGAAACAGACTGGAAGATTATAGATCTTAT
* * * * * *** *
81758485 CTCCCTGAGAAGTAGTGG-AGCAGA-TCGAAGACGGT-GAGCCTTAT
1 CCCCCTAAGCAGTAG-GGAAACAGACTGGAAGATTATAGA-TCTTAT
* * *
81758529 CCCCCGAAGCAGTAGGGAAACAGGCTGGAA-ATTACAGATCTTAT
1 CCCCCTAAGCAGTAGGGAAACAGACTGGAAGATTATAGATCTTAT
81758573 C
1 C
81758574 TCCTTAAACT
Statistics
Matches: 128, Mismatches: 34, Indels: 30
0.67 0.18 0.16
Matches are distributed among these distances:
43 15 0.12
44 98 0.77
45 15 0.12
ACGTcount: A:0.33, C:0.20, G:0.25, T:0.22
Consensus pattern (45 bp):
CCCCCTAAGCAGTAGGGAAACAGACTGGAAGATTATAGATCTTAT
Found at i:81758937 original size:13 final size:13
Alignment explanation
Indices: 81758919--81758999 Score: 74
Period size: 13 Copynumber: 6.0 Consensus size: 13
81758909 CAACCCAAAT
81758919 ACCACCCCACTAA
1 ACCACCCCACTAA
*
81758932 ACCACCCCATTAA
1 ACCACCCCACTAA
*
81758945 CTCCAACACCCCACTAA
1 ----ACCACCCCACTAA
**
81758962 ACC-GGCCACTAA
1 ACCACCCCACTAA
*
81758974 AACACCCCACTAA
1 ACCACCCCACTAA
81758987 ACCACCCCACTAA
1 ACCACCCCACTAA
81759000 CTCCATCACT
Statistics
Matches: 53, Mismatches: 10, Indels: 10
0.73 0.14 0.14
Matches are distributed among these distances:
12 9 0.17
13 33 0.62
17 11 0.21
ACGTcount: A:0.38, C:0.49, G:0.02, T:0.10
Consensus pattern (13 bp):
ACCACCCCACTAA
Found at i:81758957 original size:30 final size:30
Alignment explanation
Indices: 81758921--81759014 Score: 108
Period size: 30 Copynumber: 3.3 Consensus size: 30
81758911 ACCCAAATAC
*
81758921 CACCCCACTAAACCACCCCATTAACTCCAA
1 CACCCCACTAAACCACCCCACTAACTCCAA
**
81758951 CACCCCACTAAACC-GGCCACTAA----AA
1 CACCCCACTAAACCACCCCACTAACTCCAA
*
81758976 CACCCCACTAAACCACCCCACTAACTCCAT
1 CACCCCACTAAACCACCCCACTAACTCCAA
*
81759006 CACTCCACT
1 CACCCCACT
81759015 TGCCTGCAAA
Statistics
Matches: 52, Mismatches: 7, Indels: 10
0.75 0.10 0.14
Matches are distributed among these distances:
25 16 0.31
26 7 0.13
29 6 0.12
30 23 0.44
ACGTcount: A:0.35, C:0.50, G:0.02, T:0.13
Consensus pattern (30 bp):
CACCCCACTAAACCACCCCACTAACTCCAA
Found at i:81759498 original size:3 final size:3
Alignment explanation
Indices: 81759484--81759576 Score: 54
Period size: 3 Copynumber: 32.0 Consensus size: 3
81759474 AATAGTGTTT
* *
81759484 TTA TTA TT- TTA TTA TTA TT- TTCA CCTTT TTA TTA CTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TT-A --TTA TTA TTA TTA TTA TTA TTA
* * * * *
81759530 TTT TTA TTA ATA -TA GTG TTA TT- TTA TT- TTA TT- TTA TTA TCA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
81759574 TTA
1 TTA
81759577 ACATATCATT
Statistics
Matches: 69, Mismatches: 12, Indels: 18
0.70 0.12 0.18
Matches are distributed among these distances:
2 12 0.17
3 55 0.80
6 2 0.03
ACGTcount: A:0.27, C:0.05, G:0.02, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:81759681 original size:20 final size:19
Alignment explanation
Indices: 81759642--81759683 Score: 57
Period size: 20 Copynumber: 2.2 Consensus size: 19
81759632 TATTATTTTC
*
81759642 TACTTTATTACTGTATTAT
1 TACTTTATTACTGTACTAT
*
81759661 TACTATTATTACTGTCCTAT
1 TACT-TTATTACTGTACTAT
81759681 TAC
1 TAC
81759684 CAAACTAATC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.26, C:0.17, G:0.05, T:0.52
Consensus pattern (19 bp):
TACTTTATTACTGTACTAT
Found at i:81761900 original size:68 final size:66
Alignment explanation
Indices: 81761828--81762003 Score: 178
Period size: 67 Copynumber: 2.6 Consensus size: 66
81761818 CATCATGTGT
* * *
81761828 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGTGATACT-TTG-TGTACACCA
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGGGTGATACTAGTGAAGGACACCA
81761891 TGTAG
62 TGTAG
** * * *
81761896 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACTA-GTGAAGGACACCATGT
81761961 AG
65 AG
* * * *
81761963 ACAAGAGAGCTACGAGATAAAT-TGGCTAGGTCACATGGGTG
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTG
81762004 GTAACGAGTG
Statistics
Matches: 92, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
64 24 0.26
65 3 0.03
66 20 0.22
67 32 0.35
68 13 0.14
ACGTcount: A:0.31, C:0.15, G:0.30, T:0.24
Consensus pattern (66 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGGGTGATACTAGTGAAGGACACCATGTA
G
Found at i:81761933 original size:64 final size:64
Alignment explanation
Indices: 81761852--81762035 Score: 201
Period size: 67 Copynumber: 2.8 Consensus size: 64
81761842 AGACATTATG
* * * *
81761852 ATGTAGCTAGGTCGCATGGGTGATACTTTGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGGTACTGTGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * *
81761916 ATGTAGCTAGGTCGCATGTGTGGTTCTAGGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGTGGTACT--GTG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
81761981 AA
63 AA
* * * * *
81761983 AT-TGGCTAGGTCACATGGGTGGTAAC-GAGTGTTCACCATGTGGACAAGAGAGC
1 ATGTAGCTAGGTCGCATGGGTGGT-ACTGTGTGTACACCATGTAGACAAGAGAGC
81762036 CGAACTATAT
Statistics
Matches: 99, Mismatches: 17, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
63 20 0.20
64 26 0.26
66 20 0.20
67 33 0.33
ACGTcount: A:0.29, C:0.16, G:0.32, T:0.24
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGGTACTGTGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:81765528 original size:43 final size:42
Alignment explanation
Indices: 81765471--81765551 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
81765461 CGTTTATTTT
81765471 AAAAATGCCGCTAAAAGCCATGACTTTTAGCGGCGTTTGTAA
1 AAAAATGCCGCTAAAAGCCATGACTTTTAGCGGCGTTTGTAA
* * * *
81765513 AAAAATCGCCTCTAAAAGTCATGGCTTTTAGCGGTGTTT
1 AAAAAT-GCCGCTAAAAGCCATGACTTTTAGCGGCGTTT
81765552 TTTCCACAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 6 0.18
43 28 0.82
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.30
Consensus pattern (42 bp):
AAAAATGCCGCTAAAAGCCATGACTTTTAGCGGCGTTTGTAA
Found at i:81766402 original size:13 final size:14
Alignment explanation
Indices: 81766377--81766405 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
81766367 TGATGAATTG
81766377 AATTAAACAATTAT
1 AATTAAACAATTAT
81766391 AATTAAAC-ATTAT
1 AATTAAACAATTAT
81766404 AA
1 AA
81766406 ATATTTAGAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 7 0.47
14 8 0.53
ACGTcount: A:0.59, C:0.07, G:0.00, T:0.34
Consensus pattern (14 bp):
AATTAAACAATTAT
Found at i:81768067 original size:16 final size:16
Alignment explanation
Indices: 81768025--81768116 Score: 107
Period size: 16 Copynumber: 5.9 Consensus size: 16
81768015 TATAATTAAG
*
81768025 TTATGTAAGTAATGTA
1 TTATGTAAGTTATGTA
81768041 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
*
81768057 TTATGTAAGTTATGAA
1 TTATGTAAGTTATGTA
* ** **
81768073 TTTTG-ATCTT-TAAA
1 TTATGTAAGTTATGTA
81768087 TTATGTAAGTTATGTA
1 TTATGTAAGTTATGTA
81768103 TTATGTAAGTTATG
1 TTATGTAAGTTATG
81768117 AAATTTGATC
Statistics
Matches: 63, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
14 7 0.11
15 6 0.10
16 50 0.79
ACGTcount: A:0.33, C:0.01, G:0.17, T:0.49
Consensus pattern (16 bp):
TTATGTAAGTTATGTA
Found at i:81768141 original size:30 final size:30
Alignment explanation
Indices: 81768102--81768499 Score: 139
Period size: 30 Copynumber: 12.5 Consensus size: 30
81768092 TAAGTTATGT
* *
81768102 ATTATGTAAGTTATGAAATTTGATCTTTAA
1 ATTAGGTAAGTTATGAAATTTGAACTTTAA
81768132 ATTAGGTAAGTTATGAAATTTGAACTTTAAA
1 ATTAGGTAAGTTATGAAATTTGAACTTT-AA
*
81768163 TTATTATGTAAGTTATGTAAATTATGTAACTTATGAA
1 --ATTAGGTAAGTTATG-AAATT-TG-AACTT-T-AA
* * * *
81768200 ATTTGGTCTTTAAATTATGTAAGTTATGAAATTTGAA
1 ATTAGG----TAAGTTATG-AAATT-TGAACTTT-AA
* ** * * * *
81768237 CTTTAAATTA-TTATGTAAGTT--A-TGTAA
1 -ATTAGGTAAGTTATGAAATTTGAACTTTAA
* * **
81768264 ATTATGTAACTTATGAAATTTGGTCTTTAA
1 ATTAGGTAAGTTATGAAATTTGAACTTTAA
*
81768294 ATTATGTAAGTTATGAAATTTGAACTTTAAA
1 ATTAGGTAAGTTATGAAATTTGAACTTT-AA
*
81768325 TTATTATGTAAGTTATGTAAATTATGTAACTTATGAA
1 --ATTAGGTAAGTTATG-AAATT-TG-AACTT-T-AA
* * * **
81768362 ATTTGGT--CTT-T-AAATTATGTAAGTTATGT
1 ATTAGGTAAGTTATGAAATT-TG-AACTT-TAA
* * *
81768391 ATCATGTAAGTTATGAAATTTGATCTTTAA
1 ATTAGGTAAGTTATGAAATTTGAACTTTAA
** * *
81768421 ATTATATAAGTTATG-TATTATGTAAGTTAAGTAA
1 ATTAGGTAAGTTATGAAATT-TG-AACTT---TAA
*
81768455 ATTATGTAAGTTATGAAATTTGAACTTTAA
1 ATTAGGTAAGTTATGAAATTTGAACTTTAA
*
81768485 ATTATGTAAGTTATG
1 ATTAGGTAAGTTATG
81768500 TATTATGTAA
Statistics
Matches: 283, Mismatches: 52, Indels: 66
0.71 0.13 0.16
Matches are distributed among these distances:
26 5 0.02
27 11 0.04
28 2 0.01
29 8 0.03
30 104 0.37
31 13 0.05
32 6 0.02
33 45 0.16
34 31 0.11
35 16 0.06
36 10 0.04
37 10 0.04
38 6 0.02
39 16 0.06
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.45
Consensus pattern (30 bp):
ATTAGGTAAGTTATGAAATTTGAACTTTAA
Found at i:81768180 original size:9 final size:9
Alignment explanation
Indices: 81768165--81768516 Score: 87
Period size: 9 Copynumber: 39.8 Consensus size: 9
81768155 ACTTTAAATT
81768165 ATTATGTAA
1 ATTATGTAA
*
81768174 GTTATGTAA
1 ATTATGTAA
81768183 ATTATGTAA
1 ATTATGTAA
*
81768192 CTTATG-AA
1 ATTATGTAA
81768200 ATT-TGGTCTTTAA
1 ATTAT-G----TAA
81768213 ATTATGTAA
1 ATTATGTAA
*
81768222 GTTATG-AA
1 ATTATGTAA
81768230 ATT-TG-AA
1 ATTATGTAA
* *
81768237 CTT-T-AAA
1 ATTATGTAA
81768244 TTATTATGTAA
1 --ATTATGTAA
*
81768255 GTTATGTAA
1 ATTATGTAA
81768264 ATTATGTAA
1 ATTATGTAA
*
81768273 CTTATG-AA
1 ATTATGTAA
81768281 ATT-TGGTCTTTAA
1 ATTAT-G----TAA
81768294 ATTATGTAA
1 ATTATGTAA
*
81768303 GTTATG-AA
1 ATTATGTAA
81768311 ATT-TG-AA
1 ATTATGTAA
* *
81768318 CTT-T-AAA
1 ATTATGTAA
81768325 TTATTATGTAA
1 --ATTATGTAA
*
81768336 GTTATGTAA
1 ATTATGTAA
81768345 ATTATGTAA
1 ATTATGTAA
*
81768354 CTTATG-AA
1 ATTATGTAA
81768362 ATT-TGGTCTTTAA
1 ATTAT-G----TAA
81768375 ATTATGTAA
1 ATTATGTAA
*
81768384 GTTATGT--
1 ATTATGTAA
*
81768391 ATCATGTAA
1 ATTATGTAA
*
81768400 GTTATG-AA
1 ATTATGTAA
*
81768408 ATTTGATCTTTAA
1 A-TT-A--TGTAA
*
81768421 ATTATATAA
1 ATTATGTAA
*
81768430 GTTATGT--
1 ATTATGTAA
81768437 ATTATGTAA
1 ATTATGTAA
* *
81768446 GTTAAGTAA
1 ATTATGTAA
81768455 ATTATGTAA
1 ATTATGTAA
*
81768464 GTTATG-AA
1 ATTATGTAA
81768472 ATT-TG--A
1 ATTATGTAA
*
81768478 ACT-T-TAA
1 ATTATGTAA
81768485 ATTATGTAA
1 ATTATGTAA
*
81768494 GTTATGT--
1 ATTATGTAA
81768501 ATTATGTAA
1 ATTATGTAA
81768510 ATTATGT
1 ATTATGT
81768517 GAGTTGCTGG
Statistics
Matches: 254, Mismatches: 43, Indels: 92
0.65 0.11 0.24
Matches are distributed among these distances:
6 4 0.02
7 43 0.17
8 30 0.12
9 142 0.56
10 3 0.01
11 5 0.02
12 3 0.01
13 21 0.08
14 3 0.01
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (9 bp):
ATTATGTAA
Found at i:81768212 original size:81 final size:81
Alignment explanation
Indices: 81768056--81768389 Score: 588
Period size: 81 Copynumber: 4.2 Consensus size: 81
81768046 TAAGTTATGT
* * *
81768056 ATTATGTAAGTTATGAATTTTGATCTTT-AA--ATTATGTAAGTTATGT--ATTATGTAAGTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
*
81768116 GAAATTTGATCTTTAA
66 GAAATTTGGTCTTTAA
*
81768132 ATTAGGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
81768197 GAAATTTGGTCTTTAA
66 GAAATTTGGTCTTTAA
81768213 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
81768278 GAAATTTGGTCTTTAA
66 GAAATTTGGTCTTTAA
81768294 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
1 ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
81768359 GAAATTTGGTCTTTAA
66 GAAATTTGGTCTTTAA
81768375 ATTATGTAAGTTATG
1 ATTATGTAAGTTATG
81768390 TATCATGTAA
Statistics
Matches: 247, Mismatches: 6, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
76 25 0.10
77 2 0.01
79 16 0.06
81 204 0.83
ACGTcount: A:0.36, C:0.03, G:0.14, T:0.46
Consensus pattern (81 bp):
ATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTAT
GAAATTTGGTCTTTAA
Found at i:81768346 original size:51 final size:48
Alignment explanation
Indices: 81768291--81768437 Score: 163
Period size: 46 Copynumber: 3.0 Consensus size: 48
81768281 ATTTGGTCTT
* *
81768291 TAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATTATGTAAGTTATG
1 TAAATTAGGTAACTTATGAAATTTGAACTTT-AA--ATTATGTAAGTTATG
* **
81768342 TAAATTATGTAACTTATGAAATTTGGTCTTTAAATTATGTAAGTTATG
1 TAAATTAGGTAACTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
* * * * *
81768390 T--ATCATGTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATG
1 TAAATTAGGTAACTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
81768436 TA
1 TA
81768438 TTATGTAAGT
Statistics
Matches: 88, Mismatches: 7, Indels: 6
0.87 0.07 0.06
Matches are distributed among these distances:
46 42 0.48
48 16 0.18
50 2 0.02
51 28 0.32
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (48 bp):
TAAATTAGGTAACTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
Found at i:81768446 original size:16 final size:16
Alignment explanation
Indices: 81768421--81768516 Score: 81
Period size: 16 Copynumber: 6.0 Consensus size: 16
81768411 TGATCTTTAA
*
81768421 ATTATATAAGTTATGT
1 ATTATGTAAGTTATGT
*
81768437 ATTATGTAAGTTAAGT
1 ATTATGTAAGTTATGT
*
81768453 AAATTATGTAAGTTATGAA
1 --ATTATGTAAGTTATG-T
* **
81768472 ATT-TG-AACTT-TAA
1 ATTATGTAAGTTATGT
81768485 ATTATGTAAGTTATGT
1 ATTATGTAAGTTATGT
*
81768501 ATTATGTAAATTATGT
1 ATTATGTAAGTTATGT
81768517 GAGTTGCTGG
Statistics
Matches: 64, Mismatches: 10, Indels: 12
0.74 0.12 0.14
Matches are distributed among these distances:
13 4 0.06
14 3 0.05
15 8 0.12
16 32 0.50
17 3 0.05
18 14 0.22
ACGTcount: A:0.39, C:0.01, G:0.15, T:0.46
Consensus pattern (16 bp):
ATTATGTAAGTTATGT
Found at i:81768462 original size:64 final size:63
Alignment explanation
Indices: 81768245--81768509 Score: 256
Period size: 64 Copynumber: 4.2 Consensus size: 63
81768235 AACTTTAAAT
* * **
81768245 TATTATGTAAGTTATGTAAATTATGTAACTTATGAAATTTGGTCTTTAAATTATGTAAGTTATG
1 TATTATGTAAGTTAAGT-AATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
* * * *
81768309 AAATT-TG-AACTTTAAATTATTATGTAAGTTATGTAAATTATGTAACTTATGAAATT-TG---G
1 -TATTATGTAA-GTTAAGTAATTATGTAAGTTATG-AAATT-TG-AACTT-T-AAATTATGTAAG
* *
81768368 TCTTTA
59 T-TATG
* * * * *
81768374 AATTATGTAAGTTATGT-ATCATGTAAGTTATGAAATTTGATCTTTAAATTATATAAGTTATG
1 TATTATGTAAGTTAAGTAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
81768436 TATTATGTAAGTTAAGTAAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
1 TATTATGTAAGTTAAGT-AATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
81768500 TATTATGTAA
1 TATTATGTAA
81768510 ATTATGTGAG
Statistics
Matches: 162, Mismatches: 23, Indels: 31
0.75 0.11 0.14
Matches are distributed among these distances:
59 5 0.03
60 2 0.01
61 4 0.02
62 19 0.12
63 23 0.14
64 83 0.51
65 13 0.08
66 5 0.03
67 3 0.02
68 5 0.03
ACGTcount: A:0.37, C:0.03, G:0.14, T:0.46
Consensus pattern (63 bp):
TATTATGTAAGTTAAGTAATTATGTAAGTTATGAAATTTGAACTTTAAATTATGTAAGTTATG
Found at i:81768560 original size:17 final size:17
Alignment explanation
Indices: 81768540--81768573 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
81768530 ACTTGAAAAA
81768540 ATATATTACTTTTGAAT
1 ATATATTACTTTTGAAT
81768557 ATATATTACTTTTGAAT
1 ATATATTACTTTTGAAT
81768574 TAGAAACATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.06, T:0.53
Consensus pattern (17 bp):
ATATATTACTTTTGAAT
Found at i:81769962 original size:14 final size:14
Alignment explanation
Indices: 81769943--81769971 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
81769933 ATACAGTATA
81769943 ATTTTACTTCATAT
1 ATTTTACTTCATAT
81769957 ATTTTACTTCATAT
1 ATTTTACTTCATAT
81769971 A
1 A
81769972 ATTATTATAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.31, C:0.14, G:0.00, T:0.55
Consensus pattern (14 bp):
ATTTTACTTCATAT
Found at i:81771343 original size:37 final size:37
Alignment explanation
Indices: 81771302--81771418 Score: 180
Period size: 37 Copynumber: 3.2 Consensus size: 37
81771292 CTATGTAGCA
81771302 GATGCATGGGGCGAAGGCGATGGAGGAGATGGGTTGC
1 GATGCATGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* * *
81771339 GATGCACGGGGCGAAGGCGATGGAGGGGATGGTTTGC
1 GATGCATGGGGCGAAGGCGATGGAGGAGATGGGTTGC
* *
81771376 GATGCATGGGGAGAAGGCGATAGAGGAGATGGGTTGC
1 GATGCATGGGGCGAAGGCGATGGAGGAGATGGGTTGC
*
81771413 AATGCA
1 GATGCA
81771419 CAGGGAGATT
Statistics
Matches: 71, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
37 71 1.00
ACGTcount: A:0.24, C:0.11, G:0.49, T:0.16
Consensus pattern (37 bp):
GATGCATGGGGCGAAGGCGATGGAGGAGATGGGTTGC
Found at i:81772224 original size:15 final size:15
Alignment explanation
Indices: 81772201--81772232 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
81772191 AAATAATAAT
81772201 TTATATATATTTATC
1 TTATATATATTTATC
*
81772216 TTATTTATATTTATC
1 TTATATATATTTATC
81772231 TT
1 TT
81772233 CTAAATTAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (15 bp):
TTATATATATTTATC
Found at i:81773467 original size:40 final size:37
Alignment explanation
Indices: 81773423--81773507 Score: 89
Period size: 41 Copynumber: 2.2 Consensus size: 37
81773413 TTTGCGGTGT
* * *
81773423 GTTTTTAACAAGCGCCACTATATCTCTAACTTTTAGCGGC
1 GTTTTTAA-AAGCGCCACTA-ATATATAACTTTT-GCAGC
*
81773463 GTTTTCTTTAAAGCGCCACTAATATATAACTTTTGCAGC
1 G-TTT-TTAAAAGCGCCACTAATATATAACTTTTGCAGC
81773502 GTTTTT
1 GTTTTT
81773508 TGGCCAAACG
Statistics
Matches: 39, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
37 2 0.05
38 3 0.08
39 5 0.13
40 12 0.31
41 14 0.36
42 3 0.08
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.40
Consensus pattern (37 bp):
GTTTTTAAAAGCGCCACTAATATATAACTTTTGCAGC
Found at i:81775234 original size:28 final size:28
Alignment explanation
Indices: 81775201--81775255 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
81775191 TAATTTTTGT
*
81775201 TATAAAACTAAAAGAAATATAATATGAA
1 TATAAAACTAAAACAAATATAATATGAA
*
81775229 TATAAAACTAAAACAAATATAGTATGA
1 TATAAAACTAAAACAAATATAATATGA
81775256 GCAAGTGAGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.62, C:0.05, G:0.07, T:0.25
Consensus pattern (28 bp):
TATAAAACTAAAACAAATATAATATGAA
Found at i:81779043 original size:21 final size:20
Alignment explanation
Indices: 81779010--81779048 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
81779000 CTTCTTTTTC
*
81779010 TTTCTCTTTTTCAACAACTT
1 TTTCTCTTCTTCAACAACTT
*
81779030 TTTCTTCTTCTTCAGCAAC
1 TTTC-TCTTCTTCAACAAC
81779049 AACTTCCTCT
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 4 0.25
21 12 0.75
ACGTcount: A:0.18, C:0.28, G:0.03, T:0.51
Consensus pattern (20 bp):
TTTCTCTTCTTCAACAACTT
Found at i:81779059 original size:21 final size:21
Alignment explanation
Indices: 81779035--81779077 Score: 61
Period size: 21 Copynumber: 2.0 Consensus size: 21
81779025 AACTTTTTCT
81779035 TCTTCT-TCAGCAACAACTTCC
1 TCTTCTGT-AGCAACAACTTCC
*
81779056 TCTTCTGTAGCAACTACTTCC
1 TCTTCTGTAGCAACAACTTCC
81779077 T
1 T
81779078 TCTCAATAAC
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
21 19 0.95
22 1 0.05
ACGTcount: A:0.21, C:0.35, G:0.07, T:0.37
Consensus pattern (21 bp):
TCTTCTGTAGCAACAACTTCC
Found at i:81780519 original size:29 final size:28
Alignment explanation
Indices: 81780448--81780572 Score: 135
Period size: 29 Copynumber: 4.4 Consensus size: 28
81780438 ACCCCTACAT
* *
81780448 ACATGCATATGGCCCA-CTTGGCCCAATC
1 ACATTCATATGGCCCATC-AGGCCCAATC
*
81780476 TCATTCATATGGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAA-TC
* *
81780505 ACATTCGTATAGCCCATCAGGCCCAATTC
1 ACATTCATATGGCCCATCAGGCCCAA-TC
* *
81780534 ATATTCATATGGCCCATTAGGCCCCAATC
1 ACATTCATATGGCCCATCAGG-CCCAATC
*
81780563 ACATGCATAT
1 ACATTCATAT
81780573 TCATGCTCGC
Statistics
Matches: 82, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
28 21 0.26
29 56 0.68
30 5 0.06
ACGTcount: A:0.27, C:0.33, G:0.14, T:0.26
Consensus pattern (28 bp):
ACATTCATATGGCCCATCAGGCCCAATC
Found at i:81786077 original size:30 final size:30
Alignment explanation
Indices: 81786003--81786116 Score: 112
Period size: 29 Copynumber: 3.9 Consensus size: 30
81785993 ACCCCTACAT
* *
81786003 ACATGCATATGGCCCACTT-GGCCC-AA-TC
1 ACATTCATATAGCCCA-TTAGGCCCAAATTC
*
81786031 TCATTCATAT-GACCCATTAGGCCCAAATTC
1 ACATTCATATAG-CCCATTAGGCCCAAATTC
* *
81786061 ACATTCGTATAGCCCATCAGGCCC-AATTC
1 ACATTCATATAGCCCATTAGGCCCAAATTC
* *
81786090 ATATTCATATGGCCCATTAGGCCCAAA
1 ACATTCATATAGCCCATTAGGCCCAAA
81786117 CAACATGCAT
Statistics
Matches: 71, Mismatches: 9, Indels: 10
0.79 0.10 0.11
Matches are distributed among these distances:
27 3 0.04
28 17 0.24
29 27 0.38
30 23 0.32
31 1 0.01
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (30 bp):
ACATTCATATAGCCCATTAGGCCCAAATTC
Found at i:81795767 original size:14 final size:13
Alignment explanation
Indices: 81795747--81795778 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
81795737 AATATTTGAC
81795747 TTGTTCTTAATTA
1 TTGTTCTTAATTA
81795760 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
81795774 TTGTT
1 TTGTT
81795779 TTGATATTCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:81797960 original size:38 final size:38
Alignment explanation
Indices: 81797907--81797983 Score: 127
Period size: 38 Copynumber: 2.0 Consensus size: 38
81797897 AATTAAAAAG
*
81797907 TAAAATTTTTAACCAATTTAATGGTCTCTGCCTACTTT
1 TAAAATTTTTAACCAATTTAATAGTCTCTGCCTACTTT
* *
81797945 TAAAATTTTTGACCAATTTAATAGTCTTTGCCTACTTT
1 TAAAATTTTTAACCAATTTAATAGTCTCTGCCTACTTT
81797983 T
1 T
81797984 GGTCACTATT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.17, G:0.08, T:0.47
Consensus pattern (38 bp):
TAAAATTTTTAACCAATTTAATAGTCTCTGCCTACTTT
Found at i:81800289 original size:46 final size:46
Alignment explanation
Indices: 81800098--81800261 Score: 154
Period size: 46 Copynumber: 3.5 Consensus size: 46
81800088 TAGGCTAGTA
* * * *
81800098 TAAGACATGTCTGGGACATGCATCGGCCAC-ATTATG-AGAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCGA-GACGTA-AGCCAGTG
* * * * * ** *
81800144 TAAGACCATGTTTGGGATATGGCATC-GACATTGAGACTTGTGCTAGTG
1 TAAGA-CATGTCTGGGACAT-GCATCAG-CCTCGAGACGTAAGCCAGTG
81800192 TAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCCAGTG
1 TAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCCAGTG
81800238 TAAGACATGTCTGGGACATGCATC
1 TAAGACATGTCTGGGACATGCATC
81800262 GGTTACGAGA
Statistics
Matches: 93, Mismatches: 19, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
46 48 0.52
47 26 0.28
48 18 0.19
49 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.28, T:0.24
Consensus pattern (46 bp):
TAAGACATGTCTGGGACATGCATCAGCCTCGAGACGTAAGCCAGTG
Done.