Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 24 of 297
Found at i:8162686 original size:29 final size:28
Alignment explanation
Indices: 8162643--8162748 Score: 104
Period size: 29 Copynumber: 3.6 Consensus size: 28
8162633 AAAATAACAT
*
8162643 TTTGACTCCTAAACTTTTCCTAAATTTTAA
1 TTTGAC-CCTAAAC-TTTCCTAAATTTCAA
* *
8162673 TTTGACCCTAAACTTTCTTTAAATTTCAT
1 TTTGACCCTAAACTTTC-CTAAATTTCAA
* *
8162702 TTTGACCCCTAAACTTTCCTTAAATTACAT
1 TTTGA-CCCTAAACTTTCC-TAAATTTCAA
* *
8162732 TTTAACCCTAAATTTTC
1 TTTGACCCTAAACTTTC
8162749 TAAGAATTAC
Statistics
Matches: 66, Mismatches: 7, Indels: 7
0.82 0.09 0.09
Matches are distributed among these distances:
28 4 0.06
29 31 0.47
30 31 0.47
ACGTcount: A:0.29, C:0.23, G:0.03, T:0.45
Consensus pattern (28 bp):
TTTGACCCTAAACTTTCCTAAATTTCAA
Found at i:8164255 original size:17 final size:18
Alignment explanation
Indices: 8164235--8164271 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
8164225 TATAAAAAAA
8164235 TTCGAG-TTTCAAAAATT
1 TTCGAGTTTTCAAAAATT
*
8164252 TTCGTGTTTTCAAAAATT
1 TTCGAGTTTTCAAAAATT
8164270 TT
1 TT
8164272 TGTTCTTTTT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 5 0.28
18 13 0.72
ACGTcount: A:0.30, C:0.11, G:0.11, T:0.49
Consensus pattern (18 bp):
TTCGAGTTTTCAAAAATT
Found at i:8176204 original size:91 final size:88
Alignment explanation
Indices: 8176080--8176347 Score: 303
Period size: 87 Copynumber: 3.0 Consensus size: 88
8176070 TATCCTGATA
* * *
8176080 TTTTTATTTCTGTTTTTC--AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGCCAC
1 TTTTTATTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCAC
*
8176143 ATGCCGAGGTATTTTCAATTTCTGG
65 ATGCTGAGGTATTTTCAATTTCT-G
* **
8176168 TTTTTAGTTTCTGCTTTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGTCA
1 TTTTTA-TTTCTG-TTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* * *
8176233 TATGCTGAGATATTTTCATTTTCTG
64 CATGCTGAGGTATTTTCAATTTCTG
* * * *
8176258 TTTTCAATTTATG---TGAAAAAAGATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGTCA
1 TTTT-TATTTCTGTTTTCAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCA
* *
8176320 CATGCTGAGGTATTTTCAGTTTATG
64 CATGCTGAGGTATTTTCAATTTCTG
8176345 TTT
1 TTT
8176348 CAAAAAAGAT
Statistics
Matches: 153, Mismatches: 22, Indels: 11
0.82 0.12 0.06
Matches are distributed among these distances:
86 7 0.05
87 60 0.39
88 6 0.04
89 11 0.07
90 10 0.07
91 59 0.39
ACGTcount: A:0.26, C:0.16, G:0.20, T:0.38
Consensus pattern (88 bp):
TTTTTATTTCTGTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
TGCTGAGGTATTTTCAATTTCTG
Found at i:8176303 original size:87 final size:87
Alignment explanation
Indices: 8176098--8176730 Score: 434
Period size: 77 Copynumber: 7.8 Consensus size: 87
8176088 TCTGTTTTTC
* * * *
8176098 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTTGGGCCACATGCCGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAATT
* * *
8176163 TCTGGTTTTTAGTTTCTGCTTTTCAA
66 TCT-GTTTTCAATTTATG---TTCAA
* ** * * *
8176189 AAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGTCATATGCTGAGATATTTTCATTT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAATT
*
8176254 TCTGTTTTCAATTTATG-TGAA
66 TCTGTTTTCAATTTATGTTCAA
*
8176275 AAAAGATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGTCACATGCTGAGGTATTTTC-A-
1 AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAT
*
8176338 ----G-TTT--A--TGT-TTCAA
65 TTCTGTTTTCAATTTATGTTCAA
* * * * *
8176351 AAAAGAT-TACTCATATTGTGAGAGGTGAGTTGAGCCTTGAGTCACATGGTGAGGTATTTTCAAT
1 AAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAAT
8176415 TTC-----T--A-TT-T-TTCAA
65 TTCTGTTTTCAATTTATGTTCAA
* * *
8176428 AAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGTCACACGCCGAGGTATTTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTA-TTTTCAAT
*
8176493 TTC-----T--A--TCT-TTCAA
65 TTCTGTTTTCAATTTATGTTCAA
* * * * *
8176506 AAAAATGAACTCATTTTGCGAGAGCTGAGTTGAGGCTCGGGTCACACGCTGAGGTATTTTCAATT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAATT
**
8176571 TCCAT-TTTTCAA---A---AAAA
66 T-C-TGTTTTCAATTTATGTTCAA
* * *
8176588 AAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGGTATTTTCAA-T
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAATT
8176652 T-T-TTTTC---TT-T-TTC--
66 TCTGTTTTCAATTTATGTTCAA
* * * * * * *
8176665 AAAGATCAACTCATAATCCGAAAGGTGAGTTGAACTTCGGGTCACAT-CTTGAGCTATTTTCAAT
1 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGC-TGAGGTATTTTCAAT
8176729 TT
65 TT
8176731 TTTGTTTTTC
Statistics
Matches: 454, Mismatches: 63, Indels: 63
0.78 0.11 0.11
Matches are distributed among these distances:
75 48 0.11
76 16 0.04
77 115 0.25
78 81 0.18
80 3 0.01
81 3 0.01
82 59 0.13
83 1 0.00
85 1 0.00
86 7 0.02
87 51 0.11
90 11 0.02
91 58 0.13
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.34
Consensus pattern (87 bp):
AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACATGCTGAGGTATTTTCAATT
TCTGTTTTCAATTTATGTTCAA
Found at i:8176507 original size:78 final size:77
Alignment explanation
Indices: 8176183--8176730 Score: 519
Period size: 77 Copynumber: 6.9 Consensus size: 77
8176173 AGTTTCTGCT
* ** * * *
8176183 TTTCAAAAAAATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGTCATATGCTGAGATATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTT
* *
8176248 TCATTTTCTGTTTTCAATT
66 TCAATTTC-----T--ATC
* * *
8176267 TATGTGAAAAAAGATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGTCACATGCTGAGGTA
1 T-T-TCAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA
* *
8176332 TTTTC-AGTT-TATG
63 TTTTCAATTTCTATC
* * * * * *
8176345 TTTCAAAAAAGAT-TACTCATATTGTGAGAGGTGAGTTGAGCCTTGAGTCACATGGTGAGGTATT
1 TTTCAAAAAA-ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATT
*
8176409 TTCAATTTCTATT
65 TTCAATTTCTATC
* *
8176422 TTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGTCACACGCCGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTA-TT
8176487 TTCAATTTCTATC
65 TTCAATTTCTATC
* * * *
8176500 TTTCAAAAAAATGAACTCATTTTGCGAGAGCTGAGTTGAGGCTCGGGTCACACGCTGAGGTATTT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTT
* *
8176565 TCAATTTCCATT
66 TCAATTTCTATC
* *
8176577 TTTCAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGTCACACGCTGAGG
1 TTTC-----AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGG
* *
8176642 TATTTTCAATTTTTTTC
61 TATTTTCAATTTCTATC
*** * * * * * * * *
8176659 TTTTTCAAAGATCAACTCATAATCCGAAAGGTGAGTTGAACTTCGGGTCACATC-TTGAGCTATT
1 TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA-CGCTGAGGTATT
8176723 TTCAATTT
65 TTCAATTT
8176731 TTTGTTTTTC
Statistics
Matches: 393, Mismatches: 58, Indels: 33
0.81 0.12 0.07
Matches are distributed among these distances:
75 48 0.12
76 15 0.04
77 126 0.32
78 75 0.19
80 1 0.00
82 66 0.17
84 1 0.00
85 1 0.00
86 9 0.02
87 51 0.13
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.34
Consensus pattern (77 bp):
TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACACGCTGAGGTATTT
TCAATTTCTATC
Found at i:8176564 original size:155 final size:154
Alignment explanation
Indices: 8176183--8176654 Score: 520
Period size: 155 Copynumber: 3.0 Consensus size: 154
8176173 AGTTTCTGCT
* * * * * *
8176183 TTTCAAAAAA-ATCAACTCATATTACGAGAGGTGAGTTGAGCCTCAAGTCATATGCTGAGATATT
1 TTTCAAAAAAGAT-AACTCATATTGCGAGAGCTGAGTTGAGCCTCGAGTCACACGCTGAGGTATT
* * * *
8176247 TTCATTTTCTGTTTTCAATTTATGTGAAAAAAGATCAACTCATATTGCGAGAGGTGAGCTGAGCC
65 TTCAATTTC------C-ATTT-T-TCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCC
* * *
8176312 TCGGGTCACATGCTGAGGTATTTTC-AGTTTATG
121 TCGGGTCACACGCTGAGGTATTTTCAATTTTATC
* * * * * *
8176345 TTTCAAAAAAGATTACTCATATTGTGAGAGGTGAGTTGAGCCTTGAGTCACATGGTGAGGTATTT
1 TTTCAAAAAAGATAACTCATATTGCGAGAGCTGAGTTGAGCCTCGAGTCACACGCTGAGGTATTT
* *
8176410 TCAATTTCTATTTTTC-AAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGGGTCACA
66 TCAATTTCCATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
*
8176474 CGCCGAGGTATTTTTCAATTTCTATC
131 CGCTGAGGTA-TTTTCAATTT-TATC
* * *
8176500 TTTCAAAAAA-ATGAACTCATTTTGCGAGAGCTGAGTTGAGGCTCGGGTCACACGCTGAGGTATT
1 TTTCAAAAAAGAT-AACTCATATTGCGAGAGCTGAGTTGAGCCTCGAGTCACACGCTGAGGTATT
* *
8176564 TTCAATTTCCATTTTTCAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGG
65 TTCAATTTCCATTTTTC----AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGG
8176629 TCACACGCTGAGGTATTTTCAATTTT
126 TCACACGCTGAGGTATTTTCAATTTT
8176655 TTTCTTTTTC
Statistics
Matches: 268, Mismatches: 32, Indels: 24
0.83 0.10 0.07
Matches are distributed among these distances:
152 53 0.20
153 6 0.02
154 6 0.02
155 75 0.28
158 1 0.00
159 10 0.04
160 54 0.20
162 61 0.23
163 2 0.01
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (154 bp):
TTTCAAAAAAGATAACTCATATTGCGAGAGCTGAGTTGAGCCTCGAGTCACACGCTGAGGTATTT
TCAATTTCCATTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGTCACA
CGCTGAGGTATTTTCAATTTTATC
Found at i:8176675 original size:237 final size:230
Alignment explanation
Indices: 8176273--8176710 Score: 540
Period size: 237 Copynumber: 1.9 Consensus size: 230
8176263 AATTTATGTG
* *
8176273 AAAAAAGATCAACTCATATTGCGAGAGGTGAGCTGAGCCTCGGGTCACATGCTGAGGTATTTTCA
1 AAAAAAGATCAACTCATATTGCGAGAGCTGAGCTGAGCCTCGGGTCACACGCTGAGGTATTTTCA
* * * * * * * *
8176338 GTTTATGTTTCAAAAAAGATTACTCATATTGTGAGAGGTGAGTTGAGCCTTGAGTCACATGGTGA
66 ATTTATGTTTCAAAAAAAATAACTCATATTGCGAGAGGTGAGTTAAGCCTAGAGTCACACGCTGA
* * * *
8176403 GGTATTTTCAATTTCTATTTTTCAAAAAAATCAACTCATATTGCGAGAGATGAGTTGAGCCTCGG
131 GGTATTTTCAATTTCTATTTTTC-AAAAAATCAACTCATAATCCGAAAGATGAGTTGAACCTCGG
8176468 GTCACACGCCGAGGTATTTTTCAATTTCTATCTTTC
195 GTCACACGCCGAGGTATTTTTCAATTTCTATCTTTC
* * * *
8176504 AAAAAA-ATGAACTCATTTTGCGAGAGCTGAGTTGAGGCTCGGGTCACACGCTGAGGTATTTTCA
1 AAAAAAGATCAACTCATATTGCGAGAGCTGAGCTGAGCCTCGGGTCACACGCTGAGGTATTTTCA
*
8176568 ATTTCCATTTTTCAAAAAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAG-GTCA
66 ATTT--ATGTTTC----AAAAAAAAT-AACTCATATTGCGAGAGGTGAGTTAAGCCT-AGAGTCA
* * * *
8176632 CACGCTGAGGTATTTTCAATTTTTTTCTTTTTC-AAAGATCAACTCATAATCCGAAAGGTGAGTT
123 CACGCTGAGGTATTTTCAA--TTTCTATTTTTCAAAAAATCAACTCATAATCCGAAAGATGAGTT
*
8176696 GAACTTCGGGTCACA
186 GAACCTCGGGTCACA
8176711 TCTTGAGCTA
Statistics
Matches: 173, Mismatches: 24, Indels: 14
0.82 0.11 0.07
Matches are distributed among these distances:
230 55 0.32
231 6 0.03
232 6 0.03
236 8 0.05
237 87 0.50
238 1 0.01
239 10 0.06
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (230 bp):
AAAAAAGATCAACTCATATTGCGAGAGCTGAGCTGAGCCTCGGGTCACACGCTGAGGTATTTTCA
ATTTATGTTTCAAAAAAAATAACTCATATTGCGAGAGGTGAGTTAAGCCTAGAGTCACACGCTGA
GGTATTTTCAATTTCTATTTTTCAAAAAATCAACTCATAATCCGAAAGATGAGTTGAACCTCGGG
TCACACGCCGAGGTATTTTTCAATTTCTATCTTTC
Found at i:8176966 original size:30 final size:30
Alignment explanation
Indices: 8176932--8177037 Score: 115
Period size: 30 Copynumber: 3.5 Consensus size: 30
8176922 AAACAATAAA
*
8176932 AAATTCCATTTTGACCCCTAAACTTTTCCT
1 AAATTTCATTTTGACCCCTAAACTTTTCCT
* * **
8176962 AAATTTCATTTTAACCCCCAAACTTTTTTT
1 AAATTTCATTTTGACCCCTAAACTTTTCCT
* * *
8176992 AAATTTTACTTCGACCCCTAAAC-TTTCCTT
1 AAATTTCATTTTGACCCCTAAACTTTTCC-T
*
8177022 AAATTGCATTTTGACC
1 AAATTTCATTTTGACC
8177038 TTAAATTTTC
Statistics
Matches: 59, Mismatches: 16, Indels: 2
0.77 0.21 0.03
Matches are distributed among these distances:
29 3 0.05
30 56 0.95
ACGTcount: A:0.28, C:0.26, G:0.04, T:0.42
Consensus pattern (30 bp):
AAATTTCATTTTGACCCCTAAACTTTTCCT
Found at i:8178553 original size:19 final size:18
Alignment explanation
Indices: 8178518--8178552 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
8178508 TTCGGGTTTC
*
8178518 AAAAATTTTCGTATTTTA
1 AAAAATTTTCATATTTTA
*
8178536 AAAAATTTTCATCTTTT
1 AAAAATTTTCATATTTT
8178553 TTAAATTTCT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.37, C:0.09, G:0.03, T:0.51
Consensus pattern (18 bp):
AAAAATTTTCATATTTTA
Found at i:8178636 original size:36 final size:36
Alignment explanation
Indices: 8178567--8178635 Score: 97
Period size: 35 Copynumber: 1.9 Consensus size: 36
8178557 ATTTCTCGGG
* *
8178567 TTTCAAAGATTCTCAGGTTTTCAAGAATTTTTTTGT
1 TTTCAAAGATTCTCAGGATTTCAAAAATTTTTTTGT
8178603 TTTCAAA-ATCTCTC-GGATTTCAAAAATTTTTTT
1 TTTCAAAGAT-TCTCAGGATTTCAAAAATTTTTTT
8178636 TCGAGTTTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
35 19 0.63
36 11 0.37
ACGTcount: A:0.28, C:0.13, G:0.10, T:0.49
Consensus pattern (36 bp):
TTTCAAAGATTCTCAGGATTTCAAAAATTTTTTTGT
Found at i:8186901 original size:43 final size:42
Alignment explanation
Indices: 8186843--8186997 Score: 175
Period size: 43 Copynumber: 3.6 Consensus size: 42
8186833 CAATGCCCTA
* * * *
8186843 TCCCAGATATGGTCTTACATGTCATCCTATATCGATGCCACTG
1 TCCCAGACATGGTCTTACACGTAATCCTATA-CGATGCCAATG
* * * * *
8186886 TGCTAGACAGGGTCTTACACGAAATCATATAACGATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATCCTAT-ACGATGCCAATG
* *
8186929 TCCCAGACATGGTCTTACACGTAATCACAATACAATGCCAATG
1 TCCCAGACATGGTCTTACACGTAATC-CTATACGATGCCAATG
*
8186972 TCCCAGACATGGTCTTACATGTAATC
1 TCCCAGACATGGTCTTACACGTAATC
8186998 ACATCTCGGT
Statistics
Matches: 93, Mismatches: 17, Indels: 4
0.82 0.15 0.04
Matches are distributed among these distances:
43 90 0.97
44 3 0.03
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACACGTAATCCTATACGATGCCAATG
Found at i:8191540 original size:9 final size:9
Alignment explanation
Indices: 8191506--8191712 Score: 53
Period size: 10 Copynumber: 21.4 Consensus size: 9
8191496 GTAAATTTTT
8191506 TTATAAAAA
1 TTATAAAAA
*
8191515 CTATAAAAA
1 TTATAAAAA
*
8191524 -TAT--TAA
1 TTATAAAAA
8191530 TTATAAAAA
1 TTATAAAAA
8191539 TTATAATAAA
1 TTATAA-AAA
* *
8191549 TGAAAAATAA
1 TTATAAA-AA
*
8191559 TTGTAAAAA
1 TTATAAAAA
8191568 TTATATAGAGAA
1 TTATA-A-A-AA
*
8191580 TTGTAGAGAAAA
1 -T-TATA-AAAA
*
8191592 TATTTAAAAA
1 T-TATAAAAA
*
8191602 TATCTAAAATA
1 T-TATAAAA-A
*
8191613 GTAT-AAAA
1 TTATAAAAA
* *
8191621 TAAGAAAAA
1 TTATAAAAA
*
8191630 ATATTAAAATA
1 TTA-TAAAA-A
** *
8191641 ACATATAAA
1 TTATAAAAA
*
8191650 TTACAAAAA
1 TTATAAAAA
*
8191659 ATATAACAAA
1 TTATAA-AAA
*
8191669 TTGTAAAAA
1 TTATAAAAA
8191678 TTATAAAAA
1 TTATAAAAA
8191687 TTTATTTAAAAA
1 -TTA--TAAAAA
*
8191699 CTATAAAAAA
1 TTAT-AAAAA
8191709 TTAT
1 TTAT
8191713 TAAACATATT
Statistics
Matches: 143, Mismatches: 36, Indels: 37
0.66 0.17 0.17
Matches are distributed among these distances:
6 2 0.01
7 3 0.02
8 5 0.03
9 53 0.37
10 54 0.38
11 10 0.07
12 10 0.07
13 2 0.01
14 4 0.03
ACGTcount: A:0.61, C:0.03, G:0.05, T:0.31
Consensus pattern (9 bp):
TTATAAAAA
Found at i:8191650 original size:29 final size:29
Alignment explanation
Indices: 8191597--8191662 Score: 80
Period size: 29 Copynumber: 2.3 Consensus size: 29
8191587 GAAAATATTT
** *
8191597 AAAAATATCTAAAATAGTATAAAATAAGA
1 AAAAATATCTAAAATAACATAAAATAACA
*
8191626 AAAAATAT-TAAAATAACATATAAATTACA
1 AAAAATATCTAAAATAACATA-AAATAACA
8191655 AAAAATAT
1 AAAAATAT
8191663 AACAAATTGT
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
28 10 0.31
29 22 0.69
ACGTcount: A:0.67, C:0.05, G:0.03, T:0.26
Consensus pattern (29 bp):
AAAAATATCTAAAATAACATAAAATAACA
Found at i:8191698 original size:21 final size:19
Alignment explanation
Indices: 8191655--8191736 Score: 78
Period size: 19 Copynumber: 4.2 Consensus size: 19
8191645 ATAAATTACA
8191655 AAAAATATAACAAATTGTA--
1 AAAAATATAA-AAATT-TATT
*
8191674 AAAATTATAAAAATTTATTT
1 AAAAATATAAAAATTTA-TT
*
8191694 AAAAACTATAAAAAATTATT
1 AAAAA-TATAAAAATTTATT
* *
8191714 AAACATATTAAAATTTATT
1 AAAAATATAAAAATTTATT
8191733 AAAA
1 AAAA
8191737 TTTACAATGT
Statistics
Matches: 52, Mismatches: 7, Indels: 8
0.78 0.10 0.12
Matches are distributed among these distances:
17 2 0.04
18 5 0.10
19 24 0.46
20 10 0.19
21 11 0.21
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (19 bp):
AAAAATATAAAAATTTATT
Found at i:8191704 original size:40 final size:39
Alignment explanation
Indices: 8191654--8191736 Score: 96
Period size: 40 Copynumber: 2.1 Consensus size: 39
8191644 TATAAATTAC
*
8191654 AAAAAATATAACAAATT-GTAAAAATTATAAAAATTTATTT
1 AAAAAATATAAAAAATTAGTAAAAA-TATAAAAATTTA-TT
* * * *
8191694 AAAAACTATAAAAAATTATTAAACATATTAAAATTTATT
1 AAAAAATATAAAAAATTAGTAAAAATATAAAAATTTATT
8191733 AAAA
1 AAAA
8191737 TTTACAATGT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
39 6 0.16
40 26 0.70
41 5 0.14
ACGTcount: A:0.61, C:0.04, G:0.01, T:0.34
Consensus pattern (39 bp):
AAAAAATATAAAAAATTAGTAAAAATATAAAAATTTATT
Found at i:8191731 original size:19 final size:20
Alignment explanation
Indices: 8191672--8191736 Score: 78
Period size: 21 Copynumber: 3.2 Consensus size: 20
8191662 TAACAAATTG
*
8191672 TAAAAATTATAAAAATTTATT
1 TAAAAACTATAAAAATTTA-T
*
8191693 TAAAAACTATAAAAAATTAT
1 TAAAAACTATAAAAATTTAT
* *
8191713 TAAACA-TATTAAAATTTAT
1 TAAAAACTATAAAAATTTAT
8191732 TAAAA
1 TAAAA
8191737 TTTACAATGT
Statistics
Matches: 38, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
19 15 0.39
20 6 0.16
21 17 0.45
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (20 bp):
TAAAAACTATAAAAATTTAT
Found at i:8191740 original size:10 final size:10
Alignment explanation
Indices: 8191672--8191736 Score: 62
Period size: 10 Copynumber: 6.5 Consensus size: 10
8191662 TAACAAATTG
8191672 TAAAAATTA-
1 TAAAAATTAT
8191681 TAAAAATTTATT
1 TAAAAA-TTA-T
*
8191693 TAAAAACTAT
1 TAAAAATTAT
*
8191703 AAAAAATTAT
1 TAAAAATTAT
*
8191713 TAAACA-TAT
1 TAAAAATTAT
*
8191722 TAAAATTTAT
1 TAAAAATTAT
8191732 TAAAA
1 TAAAA
8191737 TTTACAATGT
Statistics
Matches: 45, Mismatches: 7, Indels: 7
0.76 0.12 0.12
Matches are distributed among these distances:
9 13 0.29
10 24 0.53
11 2 0.04
12 6 0.13
ACGTcount: A:0.60, C:0.03, G:0.00, T:0.37
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:8195679 original size:51 final size:51
Alignment explanation
Indices: 8195616--8195715 Score: 123
Period size: 51 Copynumber: 2.0 Consensus size: 51
8195606 CTACCACATA
* * *
8195616 ACATGTAACACATCC-CTAATGAACTCGGACCTCTCAATGAGTTCGGATGTT
1 ACATGTAACACATCCAC-AATGAACTCAGACCTCTCAACGAGCTCGGATGTT
* *
8195667 ACATG-AATCACATCCACCATGAACTTAGACCTCTCAACGAGCTCGGATG
1 ACATGTAA-CACATCCACAATGAACTCAGACCTCTCAACGAGCTCGGATG
8195716 CTTGCATCCA
Statistics
Matches: 42, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
50 2 0.05
51 39 0.93
52 1 0.02
ACGTcount: A:0.31, C:0.28, G:0.17, T:0.24
Consensus pattern (51 bp):
ACATGTAACACATCCACAATGAACTCAGACCTCTCAACGAGCTCGGATGTT
Found at i:8196016 original size:22 final size:22
Alignment explanation
Indices: 8195971--8196016 Score: 65
Period size: 22 Copynumber: 2.1 Consensus size: 22
8195961 GTAATTCATA
**
8195971 ATTATAATAAAGCATTTATCAC
1 ATTATAATAAAGCATTTAAAAC
*
8195993 ATTATATTAAAGCATTTAAAAC
1 ATTATAATAAAGCATTTAAAAC
8196015 AT
1 AT
8196017 ACTACCATAC
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.48, C:0.11, G:0.04, T:0.37
Consensus pattern (22 bp):
ATTATAATAAAGCATTTAAAAC
Found at i:8199059 original size:54 final size:55
Alignment explanation
Indices: 8198971--8199102 Score: 196
Period size: 54 Copynumber: 2.4 Consensus size: 55
8198961 CTCATGGTAG
* *
8198971 GATTACCAGTCCAGGC-AAAACCCCTCATATCATGAACTCATAAGGTGATGTCGA
1 GATTGCCAGTCCAGGCTAAATCCCCTCATATCATGAACTCATAAGGTGATGTCGA
* * *
8199025 GATTGTCAGTCCAAGCTAAATCCCC-CATATCATGAACTCATAAGGTGATGTCGG
1 GATTGCCAGTCCAGGCTAAATCCCCTCATATCATGAACTCATAAGGTGATGTCGA
*
8199079 GATTGCCAGTCCAGGCTAGATCCC
1 GATTGCCAGTCCAGGCTAAATCCC
8199103 TTATAACGAA
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
54 62 0.90
55 7 0.10
ACGTcount: A:0.30, C:0.27, G:0.20, T:0.23
Consensus pattern (55 bp):
GATTGCCAGTCCAGGCTAAATCCCCTCATATCATGAACTCATAAGGTGATGTCGA
Found at i:8200451 original size:43 final size:43
Alignment explanation
Indices: 8200403--8200485 Score: 139
Period size: 43 Copynumber: 1.9 Consensus size: 43
8200393 ACTTTAACAC
* * *
8200403 ATGCATATACTCATATTTTAGGCCTTATAATAATCATAAAATT
1 ATGCATATACTCATATTCTAGACCTCATAATAATCATAAAATT
8200446 ATGCATATACTCATATTCTAGACCTCATAATAATCATAAA
1 ATGCATATACTCATATTCTAGACCTCATAATAATCATAAA
8200486 GTAAATATTT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
43 37 1.00
ACGTcount: A:0.41, C:0.17, G:0.06, T:0.36
Consensus pattern (43 bp):
ATGCATATACTCATATTCTAGACCTCATAATAATCATAAAATT
Found at i:8217746 original size:42 final size:41
Alignment explanation
Indices: 8217655--8217754 Score: 146
Period size: 42 Copynumber: 2.4 Consensus size: 41
8217645 CGATGAATCA
* * * *
8217655 GCTATATGTGGCACTTAGTGTGCGAGATCGAGATAGCTTCG
1 GCTATATATGGCACTTAGCGTGCGAGATCAACATAGCTTCG
8217696 GCTATATATGGCACTTAGCGTGCGAGATTCAACATAGCTTCG
1 GCTATATATGGCACTTAGCGTGCGAGA-TCAACATAGCTTCG
*
8217738 GCTGTATATGGCACTTA
1 GCTATATATGGCACTTA
8217755 ATGTGTGATT
Statistics
Matches: 53, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
41 25 0.47
42 28 0.53
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (41 bp):
GCTATATATGGCACTTAGCGTGCGAGATCAACATAGCTTCG
Found at i:8217786 original size:42 final size:43
Alignment explanation
Indices: 8217675--8217786 Score: 119
Period size: 42 Copynumber: 2.7 Consensus size: 43
8217665 GCACTTAGTG
*
8217675 TGCGAGA-TCGAGATAGCTTCGGCTA--TATATGGCACTTAGCG
1 TGCGAGATTCGAGATAGCTTCGGCTATGTATATGGCACTTA-CA
* *
8217716 TGCGAGATTCAACATAGCTTCGGC--TGTATATGGCACTTA-A
1 TGCGAGATTCGAGATAGCTTCGGCTATGTATATGGCACTTACA
* * *
8217756 TGTGTGATTTGAGATAGCTTCGGCTATGTAT
1 TGCGAGATTCGAGATAGCTTCGGCTATGTAT
8217787 GACACTCAGT
Statistics
Matches: 58, Mismatches: 8, Indels: 9
0.77 0.11 0.12
Matches are distributed among these distances:
40 19 0.33
41 7 0.12
42 32 0.55
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (43 bp):
TGCGAGATTCGAGATAGCTTCGGCTATGTATATGGCACTTACA
Found at i:8217825 original size:28 final size:28
Alignment explanation
Indices: 8217783--8217842 Score: 84
Period size: 28 Copynumber: 2.1 Consensus size: 28
8217773 CTTCGGCTAT
*
8217783 GTATGACACTCAGTGTGCAAGATATCGA
1 GTATGACACTCAGTGTGCAAGACATCGA
* * *
8217811 GTATGGCACTTAGTGTGCAAGACATTGA
1 GTATGACACTCAGTGTGCAAGACATCGA
8217839 GTAT
1 GTAT
8217843 TCAACGACAT
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 28 1.00
ACGTcount: A:0.30, C:0.15, G:0.27, T:0.28
Consensus pattern (28 bp):
GTATGACACTCAGTGTGCAAGACATCGA
Found at i:8220988 original size:21 final size:22
Alignment explanation
Indices: 8220941--8220988 Score: 53
Period size: 21 Copynumber: 2.2 Consensus size: 22
8220931 TGATGCAGTT
*
8220941 GTGAATTGTAAATGAAAGATTA
1 GTGAATTGTAAATGAAAGAATA
* **
8220963 TTGAATTG-AAATGTCAGAATA
1 GTGAATTGTAAATGAAAGAATA
8220984 GTGAA
1 GTGAA
8220989 ATTCTTCAGA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.44, C:0.02, G:0.23, T:0.31
Consensus pattern (22 bp):
GTGAATTGTAAATGAAAGAATA
Found at i:8225053 original size:42 final size:42
Alignment explanation
Indices: 8224952--8225092 Score: 164
Period size: 40 Copynumber: 3.4 Consensus size: 42
8224942 GAATCATCTT
* *
8224952 TATATGGCACTTAGCGTGCGAGA-TCGAGATAGCTTCGACTA
1 TATATGGCACTTAGTGTGCGATATTCGAGATAGCTTCGACTA
* * *
8224993 TATATGGCACTTTGGTGTGCGATATTCGACATAGCTTCGGCTA
1 TATATGGCAC-TTAGTGTGCGATATTCGAGATAGCTTCGACTA
8225036 TATATGGCACTTAGTGTGCGAT-TT-GAGATAGCTTC-ATCTA
1 TATATGGCACTTAGTGTGCGATATTCGAGATAGCTTCGA-CTA
* * *
8225076 TGTACGACACTTAGTGT
1 TATATGGCACTTAGTGT
8225093 ACGAGATATC
Statistics
Matches: 86, Mismatches: 11, Indels: 7
0.83 0.11 0.07
Matches are distributed among these distances:
40 27 0.31
41 12 0.14
42 21 0.24
43 26 0.30
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.33
Consensus pattern (42 bp):
TATATGGCACTTAGTGTGCGATATTCGAGATAGCTTCGACTA
Found at i:8225125 original size:28 final size:28
Alignment explanation
Indices: 8225083--8225136 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
8225073 CTATGTACGA
* *
8225083 CACTTAGTGTACGAGATATCGAGTATGG
1 CACTTAGTCTACGAGACATCGAGTATGG
* *
8225111 CACTTAGTCTGCGAGACATTGAGTAT
1 CACTTAGTCTACGAGACATCGAGTAT
8225137 TCAACTGCAT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.28, C:0.17, G:0.26, T:0.30
Consensus pattern (28 bp):
CACTTAGTCTACGAGACATCGAGTATGG
Found at i:8228906 original size:40 final size:40
Alignment explanation
Indices: 8228808--8229110 Score: 380
Period size: 40 Copynumber: 7.6 Consensus size: 40
8228798 TCCTCGTTCA
* * * ** *
8228808 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
8228847 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
8228887 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
8228927 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
8228967 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
8229007 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
8229047 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
8229087 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
8229111 CAGCATTCAA
Statistics
Matches: 239, Mismatches: 20, Indels: 9
0.89 0.07 0.03
Matches are distributed among these distances:
39 37 0.15
40 194 0.81
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:8234772 original size:12 final size:12
Alignment explanation
Indices: 8234751--8234812 Score: 52
Period size: 15 Copynumber: 4.7 Consensus size: 12
8234741 TAGGATTCAG
*
8234751 CTTTTTCTTCTT
1 CTTTTCCTTCTT
8234763 CTTTTCCTTCTTTT
1 CTTTTCCTTC--TT
*
8234777 CTTTTCTCTTCAT
1 CTTTTC-CTTCTT
8234790 CTACTTTCTCTTCTT
1 CT--TTTC-CTTCTT
8234805 CTTTTCCT
1 CTTTTCCT
8234813 CCATAGCTGA
Statistics
Matches: 42, Mismatches: 3, Indels: 10
0.76 0.05 0.18
Matches are distributed among these distances:
12 11 0.26
13 7 0.17
14 8 0.19
15 16 0.38
ACGTcount: A:0.03, C:0.31, G:0.00, T:0.66
Consensus pattern (12 bp):
CTTTTCCTTCTT
Found at i:8235188 original size:39 final size:39
Alignment explanation
Indices: 8235134--8235211 Score: 156
Period size: 39 Copynumber: 2.0 Consensus size: 39
8235124 TGAAGGTTAG
8235134 ATATACATCAGAATCGAATAAGAACTAAAGTGGAACTGT
1 ATATACATCAGAATCGAATAAGAACTAAAGTGGAACTGT
8235173 ATATACATCAGAATCGAATAAGAACTAAAGTGGAACTGT
1 ATATACATCAGAATCGAATAAGAACTAAAGTGGAACTGT
8235212 TAGCTGAAGG
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.46, C:0.13, G:0.18, T:0.23
Consensus pattern (39 bp):
ATATACATCAGAATCGAATAAGAACTAAAGTGGAACTGT
Found at i:8236202 original size:38 final size:38
Alignment explanation
Indices: 8236151--8236236 Score: 154
Period size: 38 Copynumber: 2.3 Consensus size: 38
8236141 GCTGCAACTG
8236151 TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
1 TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
* *
8236189 TGGAGTGTAGGGCTGGGTGGGTTTAGCTATTCTTCACA
1 TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
8236227 TGGAGTGTAG
1 TGGAGTGTAG
8236237 CGGTTGGTTA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
38 46 1.00
ACGTcount: A:0.16, C:0.13, G:0.40, T:0.31
Consensus pattern (38 bp):
TGGAGTGTAGGGCTGGGTGGGTTGAGCTATTCTCCACA
Found at i:8236387 original size:33 final size:32
Alignment explanation
Indices: 8236308--8236403 Score: 99
Period size: 33 Copynumber: 2.9 Consensus size: 32
8236298 GCCTATAGGC
* *
8236308 CATACTATTATCTGAAAAGGGGCTAAGGCCCAGT
1 CATACTGTTATCTGAAAA-GGGCT-TGGCCCAGT
8236342 --TACTG-TATTCTGAAAAGGGCTTGGCCCAGT
1 CATACTGTTA-TCTGAAAAGGGCTTGGCCCAGT
*
8236372 ACATACTGTTATCTGAATAGGGCTTAGGCCCA
1 -CATACTGTTATCTGAAAAGGGCTT-GGCCCA
8236404 ATGGGCTGGA
Statistics
Matches: 53, Mismatches: 3, Indels: 12
0.78 0.04 0.18
Matches are distributed among these distances:
30 8 0.15
31 7 0.13
32 12 0.23
33 18 0.34
34 8 0.15
ACGTcount: A:0.28, C:0.21, G:0.24, T:0.27
Consensus pattern (32 bp):
CATACTGTTATCTGAAAAGGGCTTGGCCCAGT
Found at i:8240879 original size:34 final size:35
Alignment explanation
Indices: 8240784--8240880 Score: 105
Period size: 34 Copynumber: 2.9 Consensus size: 35
8240774 GCCTATGGGC
* *
8240784 CATACTGTTATCTGAAAAGGGGCTAAGGCCCAGTTA
1 CATACTATTATCTGAAAA-GGGCTTAGGCCCAGTTA
* *
8240820 C-TA-TATT-T-TGAAAAGTGCTTCGGCCCAG-TA
1 CATACTATTATCTGAAAAGGGCTTAGGCCCAGTTA
*
8240850 CATACTATTATCTGAATAGGGCTTAGGCCCA
1 CATACTATTATCTGAAAAGGGCTTAGGCCCA
8240881 ATGGGCTTGA
Statistics
Matches: 50, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
30 3 0.06
31 13 0.26
32 10 0.20
33 2 0.04
34 19 0.38
35 2 0.04
36 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.22, T:0.29
Consensus pattern (35 bp):
CATACTATTATCTGAAAAGGGCTTAGGCCCAGTTA
Found at i:8241615 original size:39 final size:39
Alignment explanation
Indices: 8241572--8241651 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
8241562 CTGTTAGGAA
*
8241572 TGACTCCCTATCGACCAGTTTTTGGAAAGGCTTGTCATT
1 TGACTCCCTATCGACCAGTTTTTGGAAAGGCATGTCATT
*
8241611 TGACTCCTTATCGACCAGTTTTTGGAAAGGCATGTCATT
1 TGACTCCCTATCGACCAGTTTTTGGAAAGGCATGTCATT
8241650 TG
1 TG
8241652 TCGCTTGAGT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.21, C:0.21, G:0.21, T:0.36
Consensus pattern (39 bp):
TGACTCCCTATCGACCAGTTTTTGGAAAGGCATGTCATT
Found at i:8245406 original size:19 final size:19
Alignment explanation
Indices: 8245370--8245423 Score: 58
Period size: 19 Copynumber: 2.9 Consensus size: 19
8245360 ATCTAAATTT
* *
8245370 TTTTATTTTTCACT-TTAA
1 TTTTATTTTTTAATGTTAA
8245388 -TTTATGTTTTTAATGTTAA
1 TTTTAT-TTTTTAATGTTAA
*
8245407 TTTTATTTTTTTATGTT
1 TTTTATTTTTTAATGTT
8245424 TAATAAGGGG
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
17 5 0.17
18 6 0.20
19 14 0.47
20 5 0.17
ACGTcount: A:0.20, C:0.04, G:0.06, T:0.70
Consensus pattern (19 bp):
TTTTATTTTTTAATGTTAA
Found at i:8245426 original size:20 final size:21
Alignment explanation
Indices: 8245383--8245427 Score: 60
Period size: 19 Copynumber: 2.3 Consensus size: 21
8245373 TATTTTTCAC
8245383 TTTAA-TTTATGTTTTTAATG
1 TTTAATTTTATGTTTTTAATG
*
8245403 -TTAATTTTAT-TTTTTTATG
1 TTTAATTTTATGTTTTTAATG
8245422 TTTAAT
1 TTTAAT
8245428 AAGGGGGTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
19 12 0.55
20 10 0.45
ACGTcount: A:0.24, C:0.00, G:0.07, T:0.69
Consensus pattern (21 bp):
TTTAATTTTATGTTTTTAATG
Found at i:8252822 original size:49 final size:50
Alignment explanation
Indices: 8252695--8252827 Score: 162
Period size: 51 Copynumber: 2.6 Consensus size: 50
8252685 TCTATTATGA
* * *
8252695 GGTCGCATATGTAGTACTAAGATCAGGCTACTATGCGTACCCAATAACTTC
1 GGTCGCATGTGTAGTACTAAG-TCAGGCTACTACGCGTACCAAATAACTTC
* * * *
8252746 GATCACGTGTGTAGTACTAAGTCCAGGCTACTACGTGTACCAAATAA-TT-
1 GGTCGCATGTGTAGTACTAAGT-CAGGCTACTACGCGTACCAAATAACTTC
8252795 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 GGTCGCATGTGTAGTACTAAGT-CAGGCTACTA
8252828 TGAGTATCAG
Statistics
Matches: 70, Mismatches: 11, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
49 29 0.41
50 3 0.04
51 38 0.54
ACGTcount: A:0.29, C:0.21, G:0.23, T:0.28
Consensus pattern (50 bp):
GGTCGCATGTGTAGTACTAAGTCAGGCTACTACGCGTACCAAATAACTTC
Found at i:8255225 original size:58 final size:57
Alignment explanation
Indices: 8255087--8255226 Score: 142
Period size: 57 Copynumber: 2.4 Consensus size: 57
8255077 TGTATACAAC
* ** * *
8255087 AGGATTACCAGTCCAGGCTAAATCCTTTTTATGACATATGCTCTAAGGAGCTTGATCT
1 AGGATTACCA-TCCAGGCTAAATCCATTCCATAACATATGCTCGAAGGAGCTTGATCT
* * *
8255145 -GGATTACCCGTCCGGGCTAAATCCATTCCATAACATATGCTCGAGAGGA-CTT-ATATT
1 AGGATTA-CCATCCAGGCTAAATCCATTCCATAACATATGCTCGA-AGGAGCTTGAT-CT
8255202 AGGATTAGCCATCCAGGCTAAATCC
1 AGGATTA-CCATCCAGGCTAAATCC
8255227 TTTCTGTAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 8
0.78 0.13 0.09
Matches are distributed among these distances:
56 2 0.03
57 38 0.57
58 27 0.40
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.29
Consensus pattern (57 bp):
AGGATTACCATCCAGGCTAAATCCATTCCATAACATATGCTCGAAGGAGCTTGATCT
Found at i:8257968 original size:12 final size:13
Alignment explanation
Indices: 8257940--8257972 Score: 50
Period size: 12 Copynumber: 2.6 Consensus size: 13
8257930 TTATTTCTTT
8257940 TTCTCCATCTACC
1 TTCTCCATCTACC
*
8257953 TTCTCC-TCTTCC
1 TTCTCCATCTACC
8257965 TTCTCCAT
1 TTCTCCAT
8257973 AGCCGAACCC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
12 11 0.61
13 7 0.39
ACGTcount: A:0.09, C:0.45, G:0.00, T:0.45
Consensus pattern (13 bp):
TTCTCCATCTACC
Found at i:8267280 original size:28 final size:28
Alignment explanation
Indices: 8267248--8267312 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
8267238 ATTTACTAGA
*
8267248 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
8267276 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
8267304 ATACCCCTA
1 ATACCCCTA
8267313 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:8267459 original size:28 final size:29
Alignment explanation
Indices: 8267418--8267480 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
8267408 AGGAAGCGTC
*
8267418 CTGGTGGCTATGCCACAAATTATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTAT
8267446 CTGGTGGC-ACTGCCACAAAATATCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGTAT
8267475 CTGGTG
1 CTGGTG
8267481 ACTCTGTCAC
Statistics
Matches: 32, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 1 0.03
28 24 0.75
29 7 0.22
ACGTcount: A:0.22, C:0.22, G:0.24, T:0.32
Consensus pattern (29 bp):
CTGGTGGCTATGCCACAAAATATCTGTAT
Found at i:8267491 original size:29 final size:28
Alignment explanation
Indices: 8267428--8267491 Score: 83
Period size: 28 Copynumber: 2.2 Consensus size: 28
8267418 CTGGTGGCTA
* *
8267428 TGCCACAAATTATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
*
8267456 TGCCACAAAATATCTGTATCTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
8267485 TGTCACA
1 TGCCACA
8267492 TTTTCTGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
28 16 0.52
29 15 0.48
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:8269901 original size:39 final size:39
Alignment explanation
Indices: 8269844--8269955 Score: 143
Period size: 39 Copynumber: 2.9 Consensus size: 39
8269834 ATATATATGT
* * * *
8269844 GAGAATTATATCCAGACTTCAGGTCCGTAAGTTATAAGC
1 GAGAATTATATCCGGACTTTAGGTCCGCAAGCTATAAGC
* * *
8269883 GAGAATTATATCCGGACTTTATGTCCGCAGGCTATATGC
1 GAGAATTATATCCGGACTTTAGGTCCGCAAGCTATAAGC
* *
8269922 GAGAGTTATATCCGGACTTTAGGTCCGCAGGCTA
1 GAGAATTATATCCGGACTTTAGGTCCGCAAGCTA
8269956 CTTGCTAGAC
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
39 64 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.29
Consensus pattern (39 bp):
GAGAATTATATCCGGACTTTAGGTCCGCAAGCTATAAGC
Found at i:8269971 original size:39 final size:39
Alignment explanation
Indices: 8269837--8269972 Score: 125
Period size: 39 Copynumber: 3.5 Consensus size: 39
8269827 TGTGAATATA
* * * * * *
8269837 TATATGTGAGA-ATTATATCCAGACTTCAGGTCCGTAAGT
1 TATATGCGAGACA-TATATCCGGACTTTAGGTCCGCAGGC
* *
8269876 TATAAGCGAGA-ATTATATCCGGACTTTATGTCCGCAGGC
1 TATATGCGAGACA-TATATCCGGACTTTAGGTCCGCAGGC
**
8269915 TATATGCGAGAGTTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGACATATATCCGGACTTTAGGTCCGCAGGC
*
8269954 TACT-TGCTAGACATATATC
1 TA-TATGCGAGACATATATC
8269973 TAAATTTAAA
Statistics
Matches: 81, Mismatches: 14, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
39 80 0.99
40 1 0.01
ACGTcount: A:0.28, C:0.19, G:0.22, T:0.31
Consensus pattern (39 bp):
TATATGCGAGACATATATCCGGACTTTAGGTCCGCAGGC
Found at i:8279111 original size:43 final size:42
Alignment explanation
Indices: 8279045--8279365 Score: 222
Period size: 43 Copynumber: 7.5 Consensus size: 42
8279035 ATCTCAGACA
* * * *
8279045 TCGTGTAAGACCTTGTCTAGGACACAGGCCTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATTGAGATT
* *
8279087 TACGTATAAGACCATGTCTAGGACATCA-ACATCGTATCT--GATT
1 T-CGTATAAGACCATGTCTGGGACA-CAGGCATCG-AT-TGAGATT
* * * *
8279130 TCGTGTAAGACCGTGTCTGGGACACGGGCCTCGATTGAGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATTGAGATT
* * * **
8279172 TACGTATAAGACCATGTTTGGGACATC-GACATCGTTTCTGATT
1 T-CGTATAAGACCATGTCTGGGACA-CAGGCATCGATTGAGATT
* * * *
8279215 TCGTGTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGACTT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCGATTGAGA-TT
* * * *
8279258 ACATATAAGACCATGTCTGGGACATAGGCATCGTATT-TGATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCG-ATTGAGATT
* * * * *
8279300 TCGTGTAAGACCCTGTCTGAGATAGAGGCATCGATATTGA-ATT
1 TCGTATAAGACCATGTCTGGGACACAGGCATCG--ATTGAGATT
* * * *
8279343 ACATGTAAGACCACGTCTGGGAC
1 TCGTATAAGACCATGTCTGGGAC
8279366 GTCAGCATTG
Statistics
Matches: 218, Mismatches: 47, Indels: 27
0.75 0.16 0.09
Matches are distributed among these distances:
40 1 0.00
41 4 0.02
42 88 0.40
43 116 0.53
44 8 0.04
45 1 0.00
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (42 bp):
TCGTATAAGACCATGTCTGGGACACAGGCATCGATTGAGATT
Found at i:8279188 original size:85 final size:85
Alignment explanation
Indices: 8279045--8279318 Score: 415
Period size: 85 Copynumber: 3.2 Consensus size: 85
8279035 ATCTCAGACA
* * *
8279045 TCGTGTAAGACCTTGTCTAGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTAGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
8279110 CATCAACATCGTATCTGATT
66 CATCAACATCGTATCTGATT
* *
8279130 TCGTGTAAGACCGTGTCTGGGACACGGGCCTCGATTGAGATTTACGTATAAGACCATGTTTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
* *
8279195 CATCGACATCGTTTCTGATT
66 CATCAACATCGTATCTGATT
* * *
8279215 TCGTGTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGACTTACATATAAGACCATGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
* *
8279280 CAT-AGGCATCGTATTTGATT
66 CATCA-ACATCGTATCTGATT
*
8279300 TCGTGTAAGACCCTGTCTG
1 TCGTGTAAGACCGTGTCTG
8279319 AGATAGAGGC
Statistics
Matches: 170, Mismatches: 18, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
85 170 1.00
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (85 bp):
TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTGGGA
CATCAACATCGTATCTGATT
Found at i:8279334 original size:85 final size:85
Alignment explanation
Indices: 8279045--8279365 Score: 391
Period size: 85 Copynumber: 3.8 Consensus size: 85
8279035 ATCTCAGACA
* * *
8279045 TCGTGTAAGACCTTGTCT-AGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTAGG
1 TCGTGTAAGACCGTGTCTGA-GACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGG
*
8279109 ACATCA-ACATCGTATCTGATT
65 ACAT-AGACATCGTATTTGATT
* * * *
8279130 TCGTGTAAGACCGTGTCTGGGACACGGGCCTCGATTGAGATTTACGTATAAGACCATGTTTGGGA
1 TCGTGTAAGACCGTGTCTGAGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
*
8279195 CATCGACATCGT-TTCTGATT
66 CATAGACATCGTATT-TGATT
* * *
8279215 TCGTGTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGACTTACATATAAGACCATGTCTGGGA
1 TCGTGTAAGACCGTGTCTGAGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
*
8279280 CATAGGCATCGTATTTGATT
66 CATAGACATCGTATTTGATT
* * * * * *
8279300 TCGTGTAAGACCCTGTCTGAGATAGAGGCATCGATATTGA-A-TTACATGTAAGACCACGTCTGG
1 TCGTGTAAGACCGTGTCTGAGACACAGGCCTCG--ATTGAGATTTACATATAAGACCATGTCTGG
8279363 GAC
64 GAC
8279366 GTCAGCATTG
Statistics
Matches: 208, Mismatches: 22, Indels: 12
0.86 0.09 0.05
Matches are distributed among these distances:
84 1 0.00
85 199 0.96
86 3 0.01
87 5 0.02
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (85 bp):
TCGTGTAAGACCGTGTCTGAGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
CATAGACATCGTATTTGATT
Found at i:8279354 original size:170 final size:170
Alignment explanation
Indices: 8279045--8279365 Score: 434
Period size: 170 Copynumber: 1.9 Consensus size: 170
8279035 ATCTCAGACA
* * *
8279045 TCGTGTAAGACCTTGTCTAGGACACAGGCCTCGATTGAGATTTACGTATAAGACCATGTCTAGGA
1 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGAGACTTACATATAAGACCATGTCTAGGA
* * *
8279110 CATCAACATCGTATCTGATTTCGTGTAAGACCGTGTCTGGGACACGGGCCTCGATTGAGATTTAC
66 CATCAACATCGTATCTGATTTCGTGTAAGACCCTGTCTGAGACACGGGCATCGATTGAGATTTAC
* * *
8279175 GTATAAGACCATGTTTGGGACATCGACATCGTTTCTGATT
131 ATATAAGACCACGTCTGGGACATCGACATCGTTTCTGATT
* * *
8279215 TCGTGTAAGACCGTGTTTGGGACACAGGCCTCGATTGAGACTTACATATAAGACCATGTCTGGGA
1 TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGAGACTTACATATAAGACCATGTCTAGGA
* * *
8279280 CAT-AGGCATCGTATTTGATTTCGTGTAAGACCCTGTCTGAGATA-GAGGCATCGATATTGA-A-
66 CATCA-ACATCGTATCTGATTTCGTGTAAGACCCTGTCTGAGACACG-GGCATCG--ATTGAGAT
*
8279341 TTACATGTAAGACCACGTCTGGGAC
127 TTACATATAAGACCACGTCTGGGAC
8279366 GTCAGCATTG
Statistics
Matches: 131, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
169 2 0.02
170 123 0.94
171 1 0.01
172 5 0.04
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.29
Consensus pattern (170 bp):
TCGTGTAAGACCGTGTCTAGGACACAGGCCTCGATTGAGACTTACATATAAGACCATGTCTAGGA
CATCAACATCGTATCTGATTTCGTGTAAGACCCTGTCTGAGACACGGGCATCGATTGAGATTTAC
ATATAAGACCACGTCTGGGACATCGACATCGTTTCTGATT
Found at i:8286657 original size:85 final size:85
Alignment explanation
Indices: 8286511--8286916 Score: 587
Period size: 85 Copynumber: 4.8 Consensus size: 85
8286501 GTCTGAGACA
* *
8286511 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACGTATAAGACCGTGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
* *
8286576 CATTGGCATCGTATCTAATT
66 CATCGGCATCGTATCTGATT
** * * * *
8286596 TTTTGTAAGATCGTGTCTGGGACACAGACCTCGATTGAGATTTACGTATAAGACTATGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
8286661 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
*
8286681 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCAATTGAGATTTACATATAAGACCATGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
8286746 CATCGGCATCGTATCTGATT
66 CATCGGCATCGTATCTGATT
* * * * *
8286766 TCGTGTAAGATCGTGTTTGGTACACAGGCCTCGATTGAGGTTTACATATAAGACCATGTCTTGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
* *
8286831 CATCAGCATCGTATTTGATT
66 CATCGGCATCGTATCTGATT
* * * ** * *
8286851 TCGTGTAAGACCCTGTCTGGGACAGAGGCATCGATTTTGAATTACATGTAAGACCATGTCTGGGA
1 TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
8286916 C
66 C
8286917 GTCAGTATTG
Statistics
Matches: 286, Mismatches: 35, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
85 286 1.00
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCGTGTCTGGGACACAGGCCTCGATTGAGATTTACATATAAGACCATGTCTGGGA
CATCGGCATCGTATCTGATT
Found at i:8298344 original size:38 final size:38
Alignment explanation
Indices: 8298302--8298378 Score: 136
Period size: 38 Copynumber: 2.0 Consensus size: 38
8298292 CTTAGTAAGT
*
8298302 TCGAATAATGGAAAGGTAAACTTACCGGTCATTTAACA
1 TCGAATAACGGAAAGGTAAACTTACCGGTCATTTAACA
*
8298340 TCGAATAACGGAAAGGTAAACTTATCGGTCATTTAACA
1 TCGAATAACGGAAAGGTAAACTTACCGGTCATTTAACA
8298378 T
1 T
8298379 ACATCCAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 37 1.00
ACGTcount: A:0.39, C:0.16, G:0.18, T:0.27
Consensus pattern (38 bp):
TCGAATAACGGAAAGGTAAACTTACCGGTCATTTAACA
Found at i:8302541 original size:15 final size:15
Alignment explanation
Indices: 8302521--8302551 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
8302511 AATCTCTCAT
8302521 TCATTCTCTCATTCA
1 TCATTCTCTCATTCA
*
8302536 TCATTCTCTCTTTCA
1 TCATTCTCTCATTCA
8302551 T
1 T
8302552 TTCTCCATTC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.16, C:0.32, G:0.00, T:0.52
Consensus pattern (15 bp):
TCATTCTCTCATTCA
Found at i:8311314 original size:4 final size:4
Alignment explanation
Indices: 8311305--8311339 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
8311295 AATAATATTA
8311305 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATA
8311340 TATTTATAGC
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.51, C:0.23, G:0.00, T:0.26
Consensus pattern (4 bp):
ATAC
Found at i:8313203 original size:27 final size:28
Alignment explanation
Indices: 8313119--8313216 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
8313109 CATGAGATTG
* * * *
8313119 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
8313148 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
8313176 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
8313203 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
8313217 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:8313227 original size:27 final size:27
Alignment explanation
Indices: 8313147--8313229 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
8313137 TAAATTGTAC
* *
8313147 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
8313175 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
8313202 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
8313229 A
1 A
8313230 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:8318273 original size:6 final size:6
Alignment explanation
Indices: 8318262--8319149 Score: 1751
Period size: 6 Copynumber: 148.2 Consensus size: 6
8318252 GATCTGAATT
*
8318262 TGTATC TGTATC TGTATC -GTATC TGTATC TGTATA TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318309 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318357 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318405 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318453 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318501 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318549 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318597 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318645 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318693 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318741 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318789 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318837 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318885 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318933 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8318981 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8319029 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
8319077 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
1 TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC TGTATC
*
8319125 TGTATC TGTATC TGTATC TGAATC T
1 TGTATC TGTATC TGTATC TGTATC T
8319150 ATATTTTTAT
Statistics
Matches: 878, Mismatches: 3, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
5 5 0.01
6 873 0.99
ACGTcount: A:0.17, C:0.17, G:0.17, T:0.50
Consensus pattern (6 bp):
TGTATC
Found at i:8319425 original size:17 final size:16
Alignment explanation
Indices: 8319399--8319435 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
8319389 GACTTTTTCG
8319399 AACTTTTTGGACTGTA
1 AACTTTTTGGACTGTA
*
8319415 AACTATTTTGGACTTTA
1 AACT-TTTTGGACTGTA
8319432 AACT
1 AACT
8319436 GCAAAATTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 4 0.21
17 15 0.79
ACGTcount: A:0.30, C:0.14, G:0.14, T:0.43
Consensus pattern (16 bp):
AACTTTTTGGACTGTA
Found at i:8327223 original size:25 final size:25
Alignment explanation
Indices: 8327189--8327240 Score: 86
Period size: 25 Copynumber: 2.1 Consensus size: 25
8327179 TAATCGGGCA
**
8327189 TTGAGAGGACGGTTGAGAATTTATT
1 TTGAGAGGACCATTGAGAATTTATT
8327214 TTGAGAGGACCATTGAGAATTTATT
1 TTGAGAGGACCATTGAGAATTTATT
8327239 TT
1 TT
8327241 AGAATTTACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.29, C:0.06, G:0.27, T:0.38
Consensus pattern (25 bp):
TTGAGAGGACCATTGAGAATTTATT
Found at i:8332117 original size:20 final size:20
Alignment explanation
Indices: 8332092--8332132 Score: 73
Period size: 20 Copynumber: 2.0 Consensus size: 20
8332082 AAAAAGTAAA
*
8332092 AGCAGAAATGTAACGGCAAT
1 AGCAGAAATGTAACAGCAAT
8332112 AGCAGAAATGTAACAGCAAT
1 AGCAGAAATGTAACAGCAAT
8332132 A
1 A
8332133 ACGAGATTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 20 1.00
ACGTcount: A:0.49, C:0.15, G:0.22, T:0.15
Consensus pattern (20 bp):
AGCAGAAATGTAACAGCAAT
Found at i:8344812 original size:15 final size:15
Alignment explanation
Indices: 8344787--8344844 Score: 52
Period size: 15 Copynumber: 4.1 Consensus size: 15
8344777 GACTCCATTT
8344787 TATTT-ATATTAGGA
1 TATTTAATATTAGGA
*
8344801 TATTTAATATTAAGA
1 TATTTAATATTAGGA
*
8344816 TA---ATTATTAGGA
1 TATTTAATATTAGGA
*
8344828 TTATTTAATTTTAGGA
1 -TATTTAATATTAGGA
8344844 T
1 T
8344845 TTTTTTAATT
Statistics
Matches: 34, Mismatches: 5, Indels: 9
0.71 0.10 0.19
Matches are distributed among these distances:
12 8 0.24
13 2 0.06
14 5 0.15
15 11 0.32
16 8 0.24
ACGTcount: A:0.38, C:0.00, G:0.12, T:0.50
Consensus pattern (15 bp):
TATTTAATATTAGGA
Found at i:8344851 original size:17 final size:17
Alignment explanation
Indices: 8344816--8344856 Score: 57
Period size: 17 Copynumber: 2.4 Consensus size: 17
8344806 AATATTAAGA
8344816 TAATTATTAGGATTATT
1 TAATTATTAGGATTATT
*
8344833 TAATT-TTAGGATTTTTT
1 TAATTATTAGGA-TTATT
8344850 TAATTAT
1 TAATTAT
8344857 CTTTATTTAT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
16 6 0.29
17 14 0.67
18 1 0.05
ACGTcount: A:0.32, C:0.00, G:0.10, T:0.59
Consensus pattern (17 bp):
TAATTATTAGGATTATT
Found at i:8348599 original size:14 final size:14
Alignment explanation
Indices: 8348575--8348613 Score: 53
Period size: 13 Copynumber: 2.8 Consensus size: 14
8348565 CAACCCAATT
8348575 TTTATTTTTATTTTA
1 TTTA-TTTTATTTTA
*
8348590 TTTATTTTATCTTA
1 TTTATTTTATTTTA
8348604 -TTATTTTATT
1 TTTATTTTATT
8348614 ATTTATTATT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
13 9 0.41
14 9 0.41
15 4 0.18
ACGTcount: A:0.21, C:0.03, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTATTTTATTTTA
Found at i:8348609 original size:22 final size:19
Alignment explanation
Indices: 8348574--8348617 Score: 61
Period size: 21 Copynumber: 2.2 Consensus size: 19
8348564 GCAACCCAAT
8348574 TTTTATTTTTATTTTATTTA
1 TTTTATTTTTATTTTA-TTA
8348594 TTTTATCTTATTATTTTATTA
1 TTTTAT-TT-TTATTTTATTA
8348615 TTT
1 TTT
8348618 ATTATTTTCA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 6 0.27
21 8 0.36
22 8 0.36
ACGTcount: A:0.20, C:0.02, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTATTTTTATTTTATTA
Found at i:8348621 original size:15 final size:15
Alignment explanation
Indices: 8348574--8348625 Score: 52
Period size: 15 Copynumber: 3.3 Consensus size: 15
8348564 GCAACCCAAT
8348574 TTTTATT-TTTATTTTA
1 TTTTATTATTTA--TTA
*
8348590 TTTATTTTATCTTATTA
1 TTT-TATTAT-TTATTA
8348607 TTTTATTATTTATTA
1 TTTTATTATTTATTA
8348622 TTTT
1 TTTT
8348626 CAGATATTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
15 10 0.32
16 8 0.26
17 9 0.29
18 1 0.03
19 3 0.10
ACGTcount: A:0.21, C:0.02, G:0.00, T:0.77
Consensus pattern (15 bp):
TTTTATTATTTATTA
Found at i:8349528 original size:96 final size:96
Alignment explanation
Indices: 8349364--8349723 Score: 686
Period size: 96 Copynumber: 3.8 Consensus size: 96
8349354 TAATTTATAA
*
8349364 GAATGTGTTGGGCTGAGTAACC-AGGGTGAGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGG
1 GAATGTGTTGGGCTGAGTAACCGA-GGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGG
8349428 TTCGATATGTTCTTAGGAAAAATAAAAATTGG
65 TTCGATATGTTCTTAGGAAAAATAAAAATTGG
8349460 GAATGTGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGT
1 GAATGTGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGT
8349525 TCGATATGTTCTTAGGAAAAATAAAAATTGG
66 TCGATATGTTCTTAGGAAAAATAAAAATTGG
8349556 GAATGTGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGT
1 GAATGTGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGT
8349621 TCGATATGTTCTTAGGAAAAATAAAAATTGG
66 TCGATATGTTCTTAGGAAAAATAAAAATTGG
8349652 GAATGTGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGT
1 GAATGTGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGT
*
8349717 TCAATAT
66 TCGATAT
8349724 TTTTCCTAAG
Statistics
Matches: 261, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
96 260 1.00
97 1 0.00
ACGTcount: A:0.24, C:0.15, G:0.30, T:0.30
Consensus pattern (96 bp):
GAATGTGTTGGGCTGAGTAACCGAGGTGGGGTGCTTGGCTGTCATCTCTCTTCGCGTCAAAAGGT
TCGATATGTTCTTAGGAAAAATAAAAATTGG
Found at i:8350380 original size:15 final size:15
Alignment explanation
Indices: 8350360--8350389 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
8350350 CATTTTATTT
*
8350360 ATATTAGGATAATTA
1 ATATTAAGATAATTA
8350375 ATATTAAGATAATTA
1 ATATTAAGATAATTA
8350390 TTAGGATTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.10, T:0.40
Consensus pattern (15 bp):
ATATTAAGATAATTA
Found at i:8350417 original size:27 final size:26
Alignment explanation
Indices: 8350356--8350418 Score: 63
Period size: 27 Copynumber: 2.3 Consensus size: 26
8350346 ACTCCATTTT
8350356 ATTTATATTAGGATAATTAATATTAAG
1 ATTT-TATTAGGATAATTAATATTAAG
* * * *
8350383 ATAATTATTAGGATTATTTAATTTTAGG
1 AT-TTTATTAGGA-TAATTAATATTAAG
8350411 ATTTTATT
1 ATTTTATT
8350419 TTAATTATCT
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
27 15 0.52
28 14 0.48
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.51
Consensus pattern (26 bp):
ATTTTATTAGGATAATTAATATTAAG
Found at i:8350433 original size:10 final size:10
Alignment explanation
Indices: 8350414--8350445 Score: 57
Period size: 10 Copynumber: 3.3 Consensus size: 10
8350404 TTTTAGGATT
8350414 TTAT-TTTAA
1 TTATCTTTAA
8350423 TTATCTTTAA
1 TTATCTTTAA
8350433 TTATCTTTAA
1 TTATCTTTAA
8350443 TTA
1 TTA
8350446 AATGTATTTA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
9 4 0.18
10 18 0.82
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.62
Consensus pattern (10 bp):
TTATCTTTAA
Found at i:8365289 original size:37 final size:37
Alignment explanation
Indices: 8365239--8365313 Score: 98
Period size: 37 Copynumber: 2.0 Consensus size: 37
8365229 TTATTACGAA
* *
8365239 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
* *
8365276 GTCTTACTCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
8365313 G
1 G
8365314 CCTTTAGAGC
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
37 31 0.94
38 2 0.06
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:8365514 original size:47 final size:47
Alignment explanation
Indices: 8365436--8365642 Score: 324
Period size: 47 Copynumber: 4.4 Consensus size: 47
8365426 CCCTTCGAAA
* * * * * * *
8365436 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
8365483 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8365530 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
8365577 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
8365624 CTTATCACATATATACACT
1 CTTATCACATATATACACT
8365643 GTCTTGGCTG
Statistics
Matches: 147, Mismatches: 13, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 147 1.00
ACGTcount: A:0.28, C:0.31, G:0.09, T:0.31
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:8367491 original size:8 final size:9
Alignment explanation
Indices: 8367466--8367490 Score: 50
Period size: 9 Copynumber: 2.8 Consensus size: 9
8367456 CTATCACATT
8367466 TTTTTTTTA
1 TTTTTTTTA
8367475 TTTTTTTTA
1 TTTTTTTTA
8367484 TTTTTTT
1 TTTTTTT
8367491 AAAAAATTCG
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (9 bp):
TTTTTTTTA
Found at i:8368156 original size:38 final size:38
Alignment explanation
Indices: 8368112--8368190 Score: 158
Period size: 38 Copynumber: 2.1 Consensus size: 38
8368102 AAAATTAATG
8368112 CATGAAACTTTCACACATTCATATTCACATAAAATAAA
1 CATGAAACTTTCACACATTCATATTCACATAAAATAAA
8368150 CATGAAACTTTCACACATTCATATTCACATAAAATAAA
1 CATGAAACTTTCACACATTCATATTCACATAAAATAAA
8368188 CAT
1 CAT
8368191 AGAATATGAC
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 41 1.00
ACGTcount: A:0.47, C:0.22, G:0.03, T:0.29
Consensus pattern (38 bp):
CATGAAACTTTCACACATTCATATTCACATAAAATAAA
Found at i:8368291 original size:45 final size:46
Alignment explanation
Indices: 8368226--8368317 Score: 159
Period size: 45 Copynumber: 2.0 Consensus size: 46
8368216 TGACTCGGTT
*
8368226 TTGTGGTCCCGAAACTACTTTCCAACTA-GTCAAATTAGGGATGTC
1 TTGTGGTCCCGAAACCACTTTCCAACTACGTCAAATTAGGGATGTC
8368271 TTGTGGTCCCGAAACCACTTTCCAACTAGCGTCAAATTAGGGATGTC
1 TTGTGGTCCCGAAACCACTTTCCAACTA-CGTCAAATTAGGGATGTC
8368318 ACAGTCATCC
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
45 27 0.61
47 17 0.39
ACGTcount: A:0.26, C:0.24, G:0.21, T:0.29
Consensus pattern (46 bp):
TTGTGGTCCCGAAACCACTTTCCAACTACGTCAAATTAGGGATGTC
Found at i:8375423 original size:40 final size:40
Alignment explanation
Indices: 8375378--8375569 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
8375368 ATAACCACAA
* * *
8375378 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
8375418 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
8375458 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * * * *
8375498 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
8375538 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
8375570 CATTCAAATG
Statistics
Matches: 142, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 1 0.01
40 137 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:8375462 original size:80 final size:80
Alignment explanation
Indices: 8375349--8375568 Score: 248
Period size: 80 Copynumber: 2.8 Consensus size: 80
8375339 ACCCAAGTTT
* * * * * * * * *
8375349 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAG
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
*
8375412 CAACTCGCACAAATGC
66 C-ACTAGCACAAATGC
* * *
8375428 CTTCGGGTCTTAGCCCGGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
1 CTTCGGGACTTAGCCCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAA
* *
8375492 TCACTAGCATAAATGC
65 GCACTAGCACAAATGC
* *
8375508 CTTCGGGACTTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATA
8375569 TCATTCAAAT
Statistics
Matches: 117, Mismatches: 20, Indels: 7
0.81 0.14 0.05
Matches are distributed among these distances:
79 12 0.10
80 98 0.84
81 7 0.06
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAAG
CACTAGCACAAATGC
Found at i:8383755 original size:48 final size:48
Alignment explanation
Indices: 8383702--8384018 Score: 225
Period size: 48 Copynumber: 6.6 Consensus size: 48
8383692 GGGTGAATTA
* * * * *
8383702 CCGATGCCATGTTCTAAACATGGTCTTACACTGGCTCACATGTCGAGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGG
* * * * ** *
8383750 CCGATGCCATGTCCCAAACATGGTCTTATACTAGCTCTCATCTTAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGG
* * * * * *
8383798 TCGATGCCATATCCCAGACATGGTCTTACATTGGCTCTCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACAT-ATCGAGG
** *
8383846 CCGATATCATG-CCCTAGACATGGTCTTACACTAG-TACACATAAT-GTGG
1 CCGATGCCATGTCCC-AGACATGGTCTTACACTAGCT-CACAT-ATCGAGG
* * * *
8383894 CTGATGCCATGTCCCAGACATGGTCTTACACTAGCGCACATATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGG
* * * * * * *
8383942 TCGATACCATGTTCCAGACTTGGTCTTTCACCAGCTTCACA-A-C-ATCG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTAGC-TCACATATCGA-GG
* *
8383989 CCGATGCCATGTTCCAAACATGGTCTTACA
1 CCGATGCCATGTCCCAGACATGGTCTTACA
8384019 ATGGCTCTCA
Statistics
Matches: 214, Mismatches: 47, Indels: 17
0.77 0.17 0.06
Matches are distributed among these distances:
46 1 0.00
47 33 0.15
48 172 0.80
49 8 0.04
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTAGCTCACATATCGAGG
Found at i:8383867 original size:96 final size:95
Alignment explanation
Indices: 8383719--8384030 Score: 249
Period size: 96 Copynumber: 3.3 Consensus size: 95
8383709 CATGTTCTAA
* * *
8383719 ACATGGTCTTACACTGGCTCACATGTCGAGGCCGATGCCATGTCCCAAACATGGTCTTATACTAG
1 ACATGGTCTTACACTGGCTCACATATCGAGGCCGATACCATGTCCCAAACATGGTCTTACACTAG
* *
8383784 CTCTCATCTTAATGT-C-GATGCCATATCCCAG
66 -T-ACA-CATAATGTGCTGATGCCATATCCCAG
* * * * *
8383815 ACATGGTCTTACATTGGCTCTCATAAT-GTGGCCGATATCATG-CCCTAGACATGGTCTTACACT
1 ACATGGTCTTACACTGGCTCACAT-ATCGAGGCCGATACCATGTCCC-AAACATGGTCTTACACT
*
8383878 AGTACACATAATGTGGCTGATGCCATGTCCCAG
64 AGTACACATAATGT-GCTGATGCCATATCCCAG
* * * * * * * * * *
8383911 ACATGGTCTTACACTAGCGCACATATCAATGTCGATACCATGTTCCAGACTTGGTCTTTCACCAG
1 ACATGGTCTTACACTGGCTCACATATCGAGGCCGATACCATGTCCCAAACATGGTCTTACACTAG
* * * * * *
8383976 CTTCACA-ACAT-CGCCGATGCCATGTTCCAA
66 -TACACATA-ATGTGCTGATGCCATATCCCAG
* *
8384006 ACATGGTCTTACAATGGCTCTCATA
1 ACATGGTCTTACACTGGCTCACATA
8384031 ACATCGTCGT
Statistics
Matches: 174, Mismatches: 33, Indels: 19
0.77 0.15 0.08
Matches are distributed among these distances:
93 7 0.04
94 2 0.01
95 43 0.25
96 112 0.64
97 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.18, T:0.29
Consensus pattern (95 bp):
ACATGGTCTTACACTGGCTCACATATCGAGGCCGATACCATGTCCCAAACATGGTCTTACACTAG
TACACATAATGTGCTGATGCCATATCCCAG
Found at i:8384111 original size:48 final size:48
Alignment explanation
Indices: 8384040--8384157 Score: 139
Period size: 48 Copynumber: 2.5 Consensus size: 48
8384030 AACATCGTCG
* * * * *
8384040 TGGTCTTACATTGGCTCTCATAATGTGGCCGATATCATG-CCCTAGACA
1 TGGTCTTACACTAGCACACATAATGTGGCCGATACCATGTCCC-AGACA
* * *
8384088 TGGTCTTACACTAGTACACATAATGTGGCTGATGCCATGTCCCAGACA
1 TGGTCTTACACTAGCACACATAATGTGGCCGATACCATGTCCCAGACA
*
8384136 TGGTCTTACACTGGCACACATA
1 TGGTCTTACACTAGCACACATA
8384158 TCACCCAAAT
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 56 0.95
49 3 0.05
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.29
Consensus pattern (48 bp):
TGGTCTTACACTAGCACACATAATGTGGCCGATACCATGTCCCAGACA
Found at i:8391935 original size:48 final size:47
Alignment explanation
Indices: 8391607--8391936 Score: 293
Period size: 48 Copynumber: 6.9 Consensus size: 47
8391597 TGAACTGGCT
* * *
8391607 ATGCCATGTTCCAAACATGGTCTTACACTAGCTCACATGTCCA-AGCCG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAT-CATA-CCG
* ** * * *
8391655 ATACCATGACCCAGACATGGTCTTACACTAGCTCTCATCTCAATACCG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATACCG
* * * * * ** * *
8391703 ATGCTACGTTCCAGACTTGGTCTTACACTAGAGCACATATCAATGCCG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATC-ATACCG
* * * * * *
8391751 ATGTCATGTTCTAGACATGGTCTTACACTGGCTCTCACAACATCACCA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAT-ACCG
*
8391799 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATAACATCACCG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAT-ACCG
* * * * *
8391847 ATGCCATGTTCCAAACATAGTCTTACACTGGATCTTATATCGTGGCCG
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCAT-ACCG
* * *
8391895 ATGCCATGTCCCAAACATGGTCTTACACTGGCACACATATCA
1 ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCA
8391937 CCCAAATGGC
Statistics
Matches: 230, Mismatches: 49, Indels: 6
0.81 0.17 0.02
Matches are distributed among these distances:
47 3 0.01
48 226 0.98
49 1 0.00
ACGTcount: A:0.28, C:0.30, G:0.16, T:0.27
Consensus pattern (47 bp):
ATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCATACCG
Found at i:8394719 original size:34 final size:31
Alignment explanation
Indices: 8394651--8394723 Score: 110
Period size: 31 Copynumber: 2.4 Consensus size: 31
8394641 TATTTGATTT
* *
8394651 AAGAACAAGAATCAAAGAACAACATTTAAGG
1 AAGAAGAAGAATCAAAGAAAAACATTTAAGG
* *
8394682 AAGAAGAAGAATGAAAGAAAAACATTTAAGA
1 AAGAAGAAGAATCAAAGAAAAACATTTAAGG
8394713 AAGAAGAAGAA
1 AAGAAGAAGAA
8394724 CCTCTTGCAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.63, C:0.07, G:0.19, T:0.11
Consensus pattern (31 bp):
AAGAAGAAGAATCAAAGAAAAACATTTAAGG
Found at i:8397771 original size:206 final size:206
Alignment explanation
Indices: 8397506--8397911 Score: 677
Period size: 206 Copynumber: 2.0 Consensus size: 206
8397496 CCCTCCTGAT
*
8397506 GCAATACATCTCACCTTACTTGAAACATAAATATAACATTTTTGTAAGTTCAAGAGAACTTAATG
1 GCAATACATCCCACCTTACTTGAAACATAAATATAACATTTTTGTAAGTTCAAGAGAACTTAATG
* *
8397571 AGCTTTAATCCAAAATATACCTTGGCGGATATTAATTATGACTAATGAACATTTGTGCACCAATT
66 AGCTTTAATCCAAAATATACCTTGGCGAATATTAATTATGACTAATGAACATCTGTGCACCAATT
* ** * * *
8397636 ATTCTTTTTAGACCACTTTCTTCTACCTCGGGTGGATACCACTACAGTTTTGGTATACAGTTACA
131 ATCCTTTTTAGACCACTTTCTTCTACCTCGGGCAGATACCACTACAATTTTGGTACACACTTACA
8397701 TGCCACCTAGC
196 TGCCACCTAGC
* *
8397712 GCAATACATCCCACTTTACTTGAAACATAAATATAACATTTTTGTAAGTTCAGGAGAACTTAATG
1 GCAATACATCCCACCTTACTTGAAACATAAATATAACATTTTTGTAAGTTCAAGAGAACTTAATG
* * * *
8397777 AGCTTTAATCCAAAATATACCTTGGTGAATATTGATTATGATTAATGAACATCTGTGCGCCAATT
66 AGCTTTAATCCAAAATATACCTTGGCGAATATTAATTATGACTAATGAACATCTGTGCACCAATT
8397842 ATCCTTTTTAGACCACTTTCTTCTACCTCGGGCAGATACCACTACAATTTTGGTACACACTTACA
131 ATCCTTTTTAGACCACTTTCTTCTACCTCGGGCAGATACCACTACAATTTTGGTACACACTTACA
8397907 TGCCA
196 TGCCA
8397912 ACTATCATAC
Statistics
Matches: 185, Mismatches: 15, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
206 185 1.00
ACGTcount: A:0.32, C:0.21, G:0.13, T:0.34
Consensus pattern (206 bp):
GCAATACATCCCACCTTACTTGAAACATAAATATAACATTTTTGTAAGTTCAAGAGAACTTAATG
AGCTTTAATCCAAAATATACCTTGGCGAATATTAATTATGACTAATGAACATCTGTGCACCAATT
ATCCTTTTTAGACCACTTTCTTCTACCTCGGGCAGATACCACTACAATTTTGGTACACACTTACA
TGCCACCTAGC
Found at i:8398686 original size:25 final size:25
Alignment explanation
Indices: 8398658--8398710 Score: 72
Period size: 25 Copynumber: 2.1 Consensus size: 25
8398648 TAAGGGCCAA
*
8398658 ACAGAATATGCCACAAAGGC-ATCAT
1 ACAGAATACGCCACAAAGGCGA-CAT
*
8398683 ACAGAATACGCCACTAAGGCGACAT
1 ACAGAATACGCCACAAAGGCGACAT
8398708 ACA
1 ACA
8398711 AAATCTCATG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 24 0.96
26 1 0.04
ACGTcount: A:0.43, C:0.26, G:0.17, T:0.13
Consensus pattern (25 bp):
ACAGAATACGCCACAAAGGCGACAT
Found at i:8399352 original size:15 final size:15
Alignment explanation
Indices: 8399332--8399363 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
8399322 CATTTCACTA
*
8399332 TTATGTCTTTTGTAT
1 TTATGTCTTTTATAT
8399347 TTATGTCTTTTATAT
1 TTATGTCTTTTATAT
8399362 TT
1 TT
8399364 TGCATGCATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.16, C:0.06, G:0.09, T:0.69
Consensus pattern (15 bp):
TTATGTCTTTTATAT
Found at i:8401791 original size:13 final size:13
Alignment explanation
Indices: 8401773--8401805 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
8401763 GACACACGGT
8401773 CGTGTGGTCAGGC
1 CGTGTGGTCAGGC
8401786 CGTGTGGTCAGGC
1 CGTGTGGTCAGGC
8401799 CGTGTGG
1 CGTGTGG
8401806 GCATTCGAAA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.06, C:0.21, G:0.48, T:0.24
Consensus pattern (13 bp):
CGTGTGGTCAGGC
Found at i:8404005 original size:15 final size:15
Alignment explanation
Indices: 8403981--8404036 Score: 78
Period size: 15 Copynumber: 3.8 Consensus size: 15
8403971 GATGAATTTC
*
8403981 TTGAATTTATATTGA
1 TTGAAATTATATTGA
* *
8403996 TTGAAATTATTTTAA
1 TTGAAATTATATTGA
8404011 TTGAAATTATATTGA
1 TTGAAATTATATTGA
8404026 TTG-AATTATAT
1 TTGAAATTATAT
8404037 AATATATATG
Statistics
Matches: 36, Mismatches: 5, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
14 8 0.22
15 28 0.78
ACGTcount: A:0.38, C:0.00, G:0.11, T:0.52
Consensus pattern (15 bp):
TTGAAATTATATTGA
Found at i:8404186 original size:10 final size:10
Alignment explanation
Indices: 8404171--8404198 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
8404161 TGAAAAGTGA
8404171 ATTGAATTGT
1 ATTGAATTGT
8404181 ATTGAATTGT
1 ATTGAATTGT
8404191 ATTGAATT
1 ATTGAATT
8404199 ATGAATTAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.32, C:0.00, G:0.18, T:0.50
Consensus pattern (10 bp):
ATTGAATTGT
Found at i:8404465 original size:41 final size:37
Alignment explanation
Indices: 8404419--8404528 Score: 94
Period size: 37 Copynumber: 2.8 Consensus size: 37
8404409 TCGACCTCGA
8404419 GTCGATGAGACACTGGGTGTCATTATATTTCTTCGGATAG
1 GTCGATGAGACACTGGGTGTCA--A-ATTTCTTCGGATAG
* ** ** * * *
8404459 ATTCGATGAGGTACTGGGTACCAACTTTGTTCGGCTAG
1 -GTCGATGAGACACTGGGTGTCAAATTTCTTCGGATAG
*
8404497 GTCGATGAGACACTGGGTGTCAACTTTGCTTC
1 GTCGATGAGACACTGGGTGTCAAATTT-CTTC
8404529 AAACTATCCG
Statistics
Matches: 54, Mismatches: 14, Indels: 5
0.74 0.19 0.07
Matches are distributed among these distances:
37 22 0.41
38 14 0.26
39 1 0.02
41 17 0.31
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.33
Consensus pattern (37 bp):
GTCGATGAGACACTGGGTGTCAAATTTCTTCGGATAG
Found at i:8404701 original size:19 final size:20
Alignment explanation
Indices: 8404677--8404718 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
8404667 ATGAAACGAG
8404677 AAATTGA-AT-TGAGAATTGA
1 AAATTGAGATATGAG-ATTGA
8404696 AAATTGAGATATGAGATTGA
1 AAATTGAGATATGAGATTGA
8404716 AAA
1 AAA
8404719 CATGAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 10 0.48
21 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (20 bp):
AAATTGAGATATGAGATTGA
Found at i:8406052 original size:25 final size:25
Alignment explanation
Indices: 8405976--8406054 Score: 95
Period size: 25 Copynumber: 3.2 Consensus size: 25
8405966 ACGAGCTATA
* * *
8405976 AACGGAAAGCTCCTCCAAGCTGAAT
1 AACGGGAAGCTCATGCAAGCTGAAT
*
8406001 AACGGGAAGCTCATGCAAGCTAAAT
1 AACGGGAAGCTCATGCAAGCTGAAT
* * *
8406026 AATGGGAAGCTCATGCTAGCTGTAT
1 AACGGGAAGCTCATGCAAGCTGAAT
8406051 AACG
1 AACG
8406055 AAAAGCTGAT
Statistics
Matches: 45, Mismatches: 9, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
25 45 1.00
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (25 bp):
AACGGGAAGCTCATGCAAGCTGAAT
Found at i:8408484 original size:79 final size:81
Alignment explanation
Indices: 8408348--8408532 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
8408338 TTGAATGATG
*
8408348 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
8408412 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
8408427 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
8408489 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
8408507 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
8408533 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:8408546 original size:40 final size:40
Alignment explanation
Indices: 8408349--8408532 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
8408339 TGAATGATGT
* * * *
8408349 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
8408389 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
8408429 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8408467 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8408508 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
8408533 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:8408554 original size:79 final size:79
Alignment explanation
Indices: 8408401--8408565 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
8408391 GGACTAAGAT
* **
8408401 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
8408466 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
8408480 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
8408543 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
8408559 CCGAAGG
1 CCGAAGG
8408566 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:8414627 original size:42 final size:42
Alignment explanation
Indices: 8414563--8414644 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
8414553 GTTGCGAAAT
*
8414563 AAAAGGGTTCCGTTAGTTAAGGTGTTATGGCTCAAACACGGC
1 AAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGC
8414605 AAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACG
1 AAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACG
8414645 AGATCGAGGA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.30, C:0.16, G:0.28, T:0.26
Consensus pattern (42 bp):
AAAAGGGTTCCGTTAGTAAAGGTGTTATGGCTCAAACACGGC
Found at i:8416487 original size:79 final size:81
Alignment explanation
Indices: 8416351--8416535 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
8416341 TTGAATGATG
*
8416351 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
8416415 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
8416430 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
8416492 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
8416510 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
8416536 AACGAGTAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:8416549 original size:40 final size:40
Alignment explanation
Indices: 8416352--8416535 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
8416342 TGAATGATGT
* * * *
8416352 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
8416392 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
8416432 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8416470 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
8416511 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
8416536 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:8416557 original size:79 final size:79
Alignment explanation
Indices: 8416404--8416568 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
8416394 GGACTAAGAT
* **
8416404 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
8416469 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
8416483 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
8416546 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
8416562 CCGAAGG
1 CCGAAGG
8416569 TACGTGATTT
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.64
80 25 0.33
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:8422562 original size:39 final size:40
Alignment explanation
Indices: 8422504--8422598 Score: 158
Period size: 39 Copynumber: 2.4 Consensus size: 40
8422494 TCCTTGTTCA
8422504 GACATGTTTTTGATGATTGAACCATTATTATGGTCG-TTT
1 GACATGTTTTTGATGATTGAACCATTATTATGGTCGTTTT
*
8422543 GACATGTTTTTGATTATTGAACCATTATTATGGTCGTTTT
1 GACATGTTTTTGATGATTGAACCATTATTATGGTCGTTTT
8422583 GACAAT-TTTTTGATGA
1 GAC-ATGTTTTTGATGA
8422599 GGTAAAAGTT
Statistics
Matches: 52, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
39 35 0.67
40 15 0.29
41 2 0.04
ACGTcount: A:0.24, C:0.09, G:0.19, T:0.47
Consensus pattern (40 bp):
GACATGTTTTTGATGATTGAACCATTATTATGGTCGTTTT
Found at i:8422783 original size:20 final size:20
Alignment explanation
Indices: 8422755--8422804 Score: 82
Period size: 20 Copynumber: 2.5 Consensus size: 20
8422745 GTGTAAATTG
*
8422755 GTATCGATACGATATCACGA
1 GTATCGATACCATATCACGA
*
8422775 GTATTGATACCATATCACGA
1 GTATCGATACCATATCACGA
8422795 GTATCGATAC
1 GTATCGATAC
8422805 TCGGGATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (20 bp):
GTATCGATACCATATCACGA
Found at i:8425728 original size:51 final size:51
Alignment explanation
Indices: 8425648--8425751 Score: 190
Period size: 51 Copynumber: 2.0 Consensus size: 51
8425638 GTGCCTAAAC
*
8425648 ATATCATGCATGCCACTTATCCATCTCAACCAGTTGATACCCAAATTACCA
1 ATATCATGCATGCAACTTATCCATCTCAACCAGTTGATACCCAAATTACCA
*
8425699 ATATCATGCATGCAACTTATCCATTTCAACCAGTTGATACCCAAATTACCA
1 ATATCATGCATGCAACTTATCCATCTCAACCAGTTGATACCCAAATTACCA
8425750 AT
1 AT
8425752 TCACAAACAA
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
51 51 1.00
ACGTcount: A:0.35, C:0.29, G:0.08, T:0.29
Consensus pattern (51 bp):
ATATCATGCATGCAACTTATCCATCTCAACCAGTTGATACCCAAATTACCA
Found at i:8441507 original size:19 final size:19
Alignment explanation
Indices: 8441483--8441520 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
8441473 TTGTGGGAGT
8441483 AAGGATTTTGAATGACAAA
1 AAGGATTTTGAATGACAAA
8441502 AAGGATTTTGAATGACAAA
1 AAGGATTTTGAATGACAAA
8441521 CTCTTTTCTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.47, C:0.05, G:0.21, T:0.26
Consensus pattern (19 bp):
AAGGATTTTGAATGACAAA
Found at i:8443584 original size:16 final size:17
Alignment explanation
Indices: 8443563--8443596 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
8443553 ATCTGTTTGA
8443563 AATACAAG-AAAATGAT
1 AATACAAGAAAAATGAT
*
8443579 AATACATGAAAAATGAT
1 AATACAAGAAAAATGAT
8443596 A
1 A
8443597 TATGAAAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 7 0.44
17 9 0.56
ACGTcount: A:0.62, C:0.06, G:0.12, T:0.21
Consensus pattern (17 bp):
AATACAAGAAAAATGAT
Found at i:8452307 original size:20 final size:20
Alignment explanation
Indices: 8452282--8452320 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
8452272 ATCCTAAGGT
8452282 ATAATGGTCTAATTTTCATG
1 ATAATGGTCTAATTTTCATG
8452302 ATAATGGTCTAATTTTCAT
1 ATAATGGTCTAATTTTCAT
8452321 TTAAGCATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.10, G:0.13, T:0.46
Consensus pattern (20 bp):
ATAATGGTCTAATTTTCATG
Found at i:8454272 original size:9 final size:9
Alignment explanation
Indices: 8454240--8454266 Score: 54
Period size: 9 Copynumber: 3.0 Consensus size: 9
8454230 GTCCGTCTAA
8454240 GTATGAAAT
1 GTATGAAAT
8454249 GTATGAAAT
1 GTATGAAAT
8454258 GTATGAAAT
1 GTATGAAAT
8454267 TAATGATAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.22, T:0.33
Consensus pattern (9 bp):
GTATGAAAT
Found at i:8464931 original size:27 final size:27
Alignment explanation
Indices: 8464882--8464933 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
8464872 AGGGGCAAAA
* *
8464882 TAGTCATTTTACCCAACAGGGGTATGT
1 TAGTCATTTTACACAACAAGGGTATGT
* *
8464909 TAGTCATTTTACACTATAAGGGTAT
1 TAGTCATTTTACACAACAAGGGTAT
8464934 TTCGATAATT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.29, C:0.15, G:0.19, T:0.37
Consensus pattern (27 bp):
TAGTCATTTTACACAACAAGGGTATGT
Found at i:8465011 original size:80 final size:81
Alignment explanation
Indices: 8464927--8465212 Score: 305
Period size: 80 Copynumber: 3.6 Consensus size: 81
8464917 TTACACTATA
* * *
8464927 AGGGTATTTCGA-TAATTTTACAAATTACGAGTGTTTCGGTAATTTTACAAATCGAGGTATTTTG
1 AGGGTATTTCGAGTAATTTTACAAATTACGGGTATTTCGATAATTTTACAAATCGAGGTATTTTG
8464991 GTAATTTTACAAATTG
66 GTAATTTTACAAATTG
*** **
8465007 AGGGTATTTC-AGTAATTTTACAAATCGGGGGTACATCGATAATTTTACAAA-CTGAGGGTATTT
1 AGGGTATTTCGAGTAATTTTACAAATTACGGGTATTTCGATAATTTTACAAATC-GA-GGTATTT
*
8465070 TGGTAATTTTAAAAATTG
64 TGGTAATTTTACAAATTG
* *** * * *
8465088 ATGGTATTTCG-GTAATTTTACAAATCGGGGGTATTTCGATAATTTTACAAACTGGGGGT-TTTC
1 AGGGTATTTCGAGTAATTTTACAAATTACGGGTATTTCGATAATTTTACAAA-TCGAGGTATTTT
*
8465151 GGTAATTTTACAAACTG
65 GGTAATTTTACAAATTG
* * * * *
8465168 GGGGTATTT-TAGTAATTTTACAAACTATGGGTATTTCGGTAATTT
1 AGGGTATTTCGAGTAATTTTACAAATTACGGGTATTTCGATAATTT
8465213 CTCTTTGTTA
Statistics
Matches: 174, Mismatches: 25, Indels: 14
0.82 0.12 0.07
Matches are distributed among these distances:
79 2 0.01
80 97 0.56
81 74 0.43
82 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (81 bp):
AGGGTATTTCGAGTAATTTTACAAATTACGGGTATTTCGATAATTTTACAAATCGAGGTATTTTG
GTAATTTTACAAATTG
Found at i:8465096 original size:81 final size:81
Alignment explanation
Indices: 8464966--8465191 Score: 332
Period size: 81 Copynumber: 2.8 Consensus size: 81
8464956 AGTGTTTCGG
8464966 TAATTTTACAAA-TCGA-GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACA
1 TAATTTTACAAACT-GAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACA
8465029 AATCGGGGGTACATCGA
65 AATCGGGGGTACATCGA
* * *
8465046 TAATTTTACAAACTGAGGGTATTTTGGTAATTTTAAAAATTGATGGTATTTCGGTAATTTTACAA
1 TAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAA
**
8465111 ATCGGGGGTATTTCGA
66 ATCGGGGGTACATCGA
* * * * *
8465127 TAATTTTACAAACTGGGGGT-TTTCGGTAATTTTACAAACTGGGGGTATTTTAGTAATTTTACAA
1 TAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAA
8465191 A
66 A
8465192 CTATGGGTAT
Statistics
Matches: 131, Mismatches: 13, Indels: 4
0.89 0.09 0.03
Matches are distributed among these distances:
80 52 0.40
81 79 0.60
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (81 bp):
TAATTTTACAAACTGAGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTTACAA
ATCGGGGGTACATCGA
Found at i:8465171 original size:27 final size:26
Alignment explanation
Indices: 8464928--8465212 Score: 275
Period size: 27 Copynumber: 10.7 Consensus size: 26
8464918 TACACTATAA
* **
8464928 GGGTATTTCGATAATTTTACAAATTAC
1 GGGTATTTCGGTAATTTTACAAA-TGG
* * *
8464955 GAGTGTTTCGGTAATTTTACAAATCG
1 GGGTATTTCGGTAATTTTACAAATGG
* * *
8464981 AGGTATTTTGGTAATTTTACAAATTGA
1 GGGTATTTCGGTAATTTTACAAA-TGG
*
8465008 GGGTATTTCAGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAAT-GG
** * *
8465035 GGGTACATCGATAATTTTACAAACTGA
1 GGGTATTTCGGTAATTTTACAAA-TGG
* * *
8465062 GGGTATTTTGGTAATTTTAAAAATTGA
1 GGGTATTTCGGTAATTTTACAAA-TGG
*
8465089 TGGTATTTCGGTAATTTTACAAATCGG
1 GGGTATTTCGGTAATTTTACAAAT-GG
*
8465116 GGGTATTTCGATAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAA-TGG
8465143 GGGT-TTTCGGTAATTTTACAAACTGG
1 GGGTATTTCGGTAATTTTACAAA-TGG
** **
8465169 GGGTATTTTAGTAATTTTACAAACTAT
1 GGGTATTTCGGTAATTTTACAAA-TGG
8465196 GGGTATTTCGGTAATTT
1 GGGTATTTCGGTAATTT
8465213 CTCTTTGTTA
Statistics
Matches: 213, Mismatches: 39, Indels: 12
0.81 0.15 0.05
Matches are distributed among these distances:
26 47 0.22
27 164 0.77
28 2 0.01
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
GGGTATTTCGGTAATTTTACAAATGG
Found at i:8465817 original size:21 final size:21
Alignment explanation
Indices: 8465791--8465835 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
8465781 ACTCATCTGG
8465791 TTCGCTCTATTTAAAGTCAGC
1 TTCGCTCTATTTAAAGTCAGC
8465812 TTCGCTCTATTTAAAGTCAGC
1 TTCGCTCTATTTAAAGTCAGC
8465833 TTC
1 TTC
8465836 TCACCAATTC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (21 bp):
TTCGCTCTATTTAAAGTCAGC
Found at i:8468119 original size:30 final size:30
Alignment explanation
Indices: 8468083--8468139 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
8468073 TAATACGAAA
*
8468083 TTTTGCAAAATTACATTTTTGCCCCTAAAC
1 TTTTGCAAAATTACACTTTTGCCCCTAAAC
*
8468113 TTTTGCATAATTACACTTTTGCCCCTA
1 TTTTGCAAAATTACACTTTTGCCCCTA
8468140 GGCTCGGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.26, C:0.25, G:0.07, T:0.42
Consensus pattern (30 bp):
TTTTGCAAAATTACACTTTTGCCCCTAAAC
Found at i:8468727 original size:41 final size:41
Alignment explanation
Indices: 8468670--8468748 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
8468660 ATAGACTTAG
*
8468670 AAATTGGTCAAATTGATATTTAAGACCTCCTCATTAATTAT
1 AAATTGGTCAAATTGATAGTTAAGACCTCCTCATTAATTAT
8468711 AAATTGGTCAAATTGATAGTTAAGACCTCCTCATTAAT
1 AAATTGGTCAAATTGATAGTTAAGACCTCCTCATTAAT
8468749 ATTCCAAAAC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (41 bp):
AAATTGGTCAAATTGATAGTTAAGACCTCCTCATTAATTAT
Found at i:8506655 original size:46 final size:44
Alignment explanation
Indices: 8506605--8506775 Score: 146
Period size: 46 Copynumber: 3.7 Consensus size: 44
8506595 TCATCTTGTA
8506605 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTACGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-T-CGTCTCGAG
* * * * *
8506651 GCCGATTCATGTCCCAGACATGCCTCACACTAGCCCTCGTCTCGAT
1 GCCGATGCATGTCCCAGACATGTCTTACACT-G-GCTCGTCTCGAG
* * * **
8506697 GCTGATTCCATGTCCCATACATGGTCTTACACTGGCTC-TCATAATATG
1 GCCGA-TGCATGTCCCAGACAT-GTCTTACACTGGCTCGTC-T-CGA-G
* *
8506745 GCTGATGCATGTCCCAAACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
8506776 AGCCCTAATA
Statistics
Matches: 102, Mismatches: 16, Indels: 14
0.77 0.12 0.11
Matches are distributed among these distances:
45 2 0.02
46 54 0.53
47 32 0.31
48 14 0.14
ACGTcount: A:0.22, C:0.32, G:0.19, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTCGTCTCGAG
Found at i:8510056 original size:17 final size:17
Alignment explanation
Indices: 8510034--8510067 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
8510024 GATGAATTTA
8510034 AACCTTAATGAGTCTAT
1 AACCTTAATGAGTCTAT
8510051 AACCTTAATGAGTCTAT
1 AACCTTAATGAGTCTAT
8510068 TTTCATGTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.18, G:0.12, T:0.35
Consensus pattern (17 bp):
AACCTTAATGAGTCTAT
Found at i:8525333 original size:140 final size:140
Alignment explanation
Indices: 8524391--8525285 Score: 1747
Period size: 140 Copynumber: 6.4 Consensus size: 140
8524381 CCCAGACAAG
* * * *
8524391 GTCTTACACTAGCACTCATCTCG-TGTCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
1 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
8524455 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
66 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
8524520 TCCCGGGCAT
131 TCCCGGGCAT
8524530 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
1 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
8524595 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
66 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
8524660 TCCCGGGCAT
131 TCCCGGGCAT
8524670 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
1 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
8524735 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
66 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
8524800 TCCCGGGCAT
131 TCCCGGGCAT
8524810 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
1 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
8524875 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
66 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
8524940 TCCCGGGCAT
131 TCCCGGGCAT
8524950 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
1 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
8525015 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
66 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
8525080 TCCCGGGCAT
131 TCCCGGGCAT
8525090 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
1 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
8525155 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
66 ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
8525220 TCCCGGGCAT
131 TCCCGGGCAT
8525230 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACA
1 GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACA
8525286 CTGGCTCTCA
Statistics
Matches: 751, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
139 20 0.03
140 731 0.97
ACGTcount: A:0.20, C:0.28, G:0.21, T:0.31
Consensus pattern (140 bp):
GTCTTACACTAGCCCTCGTCTTGATGCCGATGCCATGTCCCAGACATGGTCTTACATAGACTATC
ATCTCGTAGCCGTTGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAATGCATG
TCCCGGGCAT
Found at i:8527836 original size:8 final size:8
Alignment explanation
Indices: 8527823--8527853 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
8527813 ATTACAAACC
8527823 CAAAATAT
1 CAAAATAT
8527831 CAAAATAT
1 CAAAATAT
8527839 CAAAATAT
1 CAAAATAT
8527847 CAAAATA
1 CAAAATA
8527854 AAATTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.23
Consensus pattern (8 bp):
CAAAATAT
Found at i:8530884 original size:12 final size:12
Alignment explanation
Indices: 8530867--8530894 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8530857 TTTGAAAGTT
8530867 ACACAGCCTGGC
1 ACACAGCCTGGC
8530879 ACACAGCCTGGC
1 ACACAGCCTGGC
8530891 ACAC
1 ACAC
8530895 GAGCATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.43, G:0.21, T:0.07
Consensus pattern (12 bp):
ACACAGCCTGGC
Found at i:8533353 original size:31 final size:31
Alignment explanation
Indices: 8533310--8533374 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
8533300 GTAAAATTAT
8533310 TTTATGCAAAATATTATTACTTTAAGGTTAC
1 TTTATGCAAAATATTATTACTTTAAGGTTAC
* *
8533341 TTTATGCCAAATATTATTACTTTAAGGTTTC
1 TTTATGCAAAATATTATTACTTTAAGGTTAC
8533372 TTT
1 TTT
8533375 TAAACTAAGA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.31, C:0.11, G:0.09, T:0.49
Consensus pattern (31 bp):
TTTATGCAAAATATTATTACTTTAAGGTTAC
Found at i:8537846 original size:43 final size:42
Alignment explanation
Indices: 8537776--8537880 Score: 106
Period size: 42 Copynumber: 2.5 Consensus size: 42
8537766 CAATGCAAAC
* * * *
8537776 GTCCCAGAC-GTGGTTTTATATGTAATCAAACATTGATGCC-ACT
1 GTCCCAGACAG-GGTCTTACATGAAATCAAACA-CGATGCCGA-T
* *
8537819 GTCCCAGACAGGGTCTTACATGAAATCAGATACGATGCCGAT
1 GTCCCAGACAGGGTCTTACATGAAATCAAACACGATGCCGAT
*
8537861 GTCCCAGACATGGTCTTACA
1 GTCCCAGACAGGGTCTTACA
8537881 CATAAAATAG
Statistics
Matches: 53, Mismatches: 7, Indels: 5
0.82 0.11 0.08
Matches are distributed among these distances:
42 26 0.49
43 26 0.49
44 1 0.02
ACGTcount: A:0.29, C:0.24, G:0.21, T:0.27
Consensus pattern (42 bp):
GTCCCAGACAGGGTCTTACATGAAATCAAACACGATGCCGAT
Found at i:8539952 original size:47 final size:47
Alignment explanation
Indices: 8539882--8540107 Score: 169
Period size: 47 Copynumber: 4.8 Consensus size: 47
8539872 GTAAGGGGCT
* * *
8539882 GATGCCATATCCCAGACAAGGTCTTACACTAGCACTCATCTCGTGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTGCC
8539929 GATGCCATGTCCCAGACATGGTCTTACA-TAG-ACTATCATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCAC--TCATCTCGT-GCC
* * * * * * * * *
8539977 GTTG-CATGTCCTAGACAT-GTCTTACACTGGC-TTACGTTTTGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACT-CATCTCG-TGCC
* * * * * *
8540023 AATG-CATGTCCCGGGCAT-GTCTTACACTAGCCCTCGTCTTGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCG-TGCC
* *
8540069 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAT
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCAT
8540108 AATATAGCTG
Statistics
Matches: 141, Mismatches: 28, Indels: 19
0.75 0.15 0.10
Matches are distributed among these distances:
45 3 0.02
46 54 0.38
47 63 0.45
48 21 0.15
ACGTcount: A:0.21, C:0.29, G:0.20, T:0.29
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACTCATCTCGTGCC
Found at i:8540029 original size:46 final size:45
Alignment explanation
Indices: 8539979--8540102 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 45
8539969 TCGTAGCCGT
* * *
8539979 TGCATGTCCTAGACATGTCTTACACTGGCTTACGTTTTGAGGCTAA
1 TGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTTGAGGCCAA
* * * * * *
8540025 TGCATGTCCCGGGCATGTCTTACACTAGCCCTCGTCTTGATGCCGA
1 TGCATGTCCCAGACATGTCTTACACT-GGCTTCGTCTTGAGGCCAA
8540071 TGCCATGTCCCAGACATGGTCTTACACTGGCT
1 TG-CATGTCCCAGACAT-GTCTTACACTGGCT
8540103 CTCATAATAT
Statistics
Matches: 62, Mismatches: 13, Indels: 5
0.77 0.16 0.06
Matches are distributed among these distances:
46 35 0.56
47 17 0.27
48 10 0.16
ACGTcount: A:0.19, C:0.28, G:0.23, T:0.31
Consensus pattern (45 bp):
TGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTTGAGGCCAA
Found at i:8542647 original size:8 final size:8
Alignment explanation
Indices: 8542634--8542664 Score: 62
Period size: 8 Copynumber: 3.9 Consensus size: 8
8542624 ATTACAAACC
8542634 CAAAATAT
1 CAAAATAT
8542642 CAAAATAT
1 CAAAATAT
8542650 CAAAATAT
1 CAAAATAT
8542658 CAAAATA
1 CAAAATA
8542665 AAATTTAATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.65, C:0.13, G:0.00, T:0.23
Consensus pattern (8 bp):
CAAAATAT
Found at i:8545695 original size:12 final size:12
Alignment explanation
Indices: 8545678--8545705 Score: 56
Period size: 12 Copynumber: 2.3 Consensus size: 12
8545668 TTTGAAAGTT
8545678 ACACAGCCTGGC
1 ACACAGCCTGGC
8545690 ACACAGCCTGGC
1 ACACAGCCTGGC
8545702 ACAC
1 ACAC
8545706 GAGCATGTGA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 16 1.00
ACGTcount: A:0.29, C:0.43, G:0.21, T:0.07
Consensus pattern (12 bp):
ACACAGCCTGGC
Done.