Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 245 of 297
Found at i:83730754 original size:42 final size:42
Alignment explanation
Indices: 83730631--83730754 Score: 124
Period size: 43 Copynumber: 2.9 Consensus size: 42
83730621 AGTACAATAC
* *
83730631 CAATGCCATATCCCAGATATGGTCTTACATGTGATCTCGTAT
1 CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCATAT
** * * * * *
83730673 TGATGCCAATAGCCTAGCTATGGACTTACACG-AAGTCTCATAT
1 CAATGCC-ATATCCCAGATATGGTCTTACATGTAA-TCTCATAT
* *
83730716 CAATGTCATATCCCAAATATGGTCTTACATGTAATCTCA
1 CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCA
83730755 GTAACCCTAA
Statistics
Matches: 61, Mismatches: 18, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
42 29 0.48
43 32 0.52
ACGTcount: A:0.30, C:0.23, G:0.15, T:0.31
Consensus pattern (42 bp):
CAATGCCATATCCCAGATATGGTCTTACATGTAATCTCATAT
Found at i:83739072 original size:15 final size:16
Alignment explanation
Indices: 83739052--83739081 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
83739042 AAGATCTTAT
83739052 AATCATAA-CTTACTC
1 AATCATAACCTTACTC
83739067 AATCATAACCTTACT
1 AATCATAACCTTACT
83739082 GAGGGTTCAT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 8 0.57
16 6 0.43
ACGTcount: A:0.40, C:0.27, G:0.00, T:0.33
Consensus pattern (16 bp):
AATCATAACCTTACTC
Found at i:83739554 original size:15 final size:13
Alignment explanation
Indices: 83739529--83739598 Score: 68
Period size: 15 Copynumber: 4.8 Consensus size: 13
83739519 GCTCTCCCTC
83739529 TCTTCTTCTTTCCTT
1 TCTT-TTCTTT-CTT
83739544 TCTATTTCTTTCTT
1 TCT-TTTCTTTCTT
83739558 CTCTTTTCTTTCTT
1 -TCTTTTCTTTCTT
83739572 TCTTTCCTCTTTCTT
1 TCTTT--TCTTTCTT
*
83739587 TCCCTTTCTTTC
1 T-CTTTTCTTTC
83739599 CCCCTTTTCT
Statistics
Matches: 49, Mismatches: 1, Indels: 11
0.80 0.02 0.18
Matches are distributed among these distances:
13 5 0.10
14 19 0.39
15 21 0.43
16 4 0.08
ACGTcount: A:0.01, C:0.31, G:0.00, T:0.67
Consensus pattern (13 bp):
TCTTTTCTTTCTT
Found at i:83739557 original size:4 final size:4
Alignment explanation
Indices: 83739534--83739598 Score: 51
Period size: 4 Copynumber: 14.8 Consensus size: 4
83739524 CCCTCTCTTC
*
83739534 TTCT TTCCT TTCTAT TTCT TTCT TCTCTT TTCT TTCT TTCT TTC- CTCT
1 TTCT TT-CT TTC--T TTCT TTCT T-TC-T TTCT TTCT TTCT TTCT TTCT
83739582 TTCT TTCCCT TTCT TTC
1 TTCT TT--CT TTCT TTC
83739599 CCCCTTTTCT
Statistics
Matches: 51, Mismatches: 2, Indels: 16
0.74 0.03 0.23
Matches are distributed among these distances:
3 2 0.04
4 31 0.61
5 8 0.16
6 10 0.20
ACGTcount: A:0.02, C:0.31, G:0.00, T:0.68
Consensus pattern (4 bp):
TTCT
Found at i:83739569 original size:18 final size:19
Alignment explanation
Indices: 83739534--83739599 Score: 66
Period size: 19 Copynumber: 3.4 Consensus size: 19
83739524 CCCTCTCTTC
*
83739534 TTCTTTCCT-TTCTATTTCT
1 TTCTTTCCTCTT-TCTTTCT
83739553 TTC-TT-CTCTTTTCTTTCT
1 TTCTTTCCTC-TTTCTTTCT
83739571 TTCTTTCCTCTTTCTTTCCCT
1 TTCTTTCCTCTTTCTTT--CT
83739592 TTCTTTCC
1 TTCTTTCC
83739600 CCCTTTTCTG
Statistics
Matches: 40, Mismatches: 1, Indels: 10
0.78 0.02 0.20
Matches are distributed among these distances:
17 2 0.05
18 11 0.28
19 14 0.35
20 3 0.08
21 10 0.25
ACGTcount: A:0.02, C:0.32, G:0.00, T:0.67
Consensus pattern (19 bp):
TTCTTTCCTCTTTCTTTCT
Found at i:83739595 original size:10 final size:10
Alignment explanation
Indices: 83739569--83739600 Score: 55
Period size: 10 Copynumber: 3.1 Consensus size: 10
83739559 TCTTTTCTTT
83739569 CTTTCTTTCC
1 CTTTCTTTCC
83739579 TCTTTCTTTCC
1 -CTTTCTTTCC
83739590 CTTTCTTTCC
1 CTTTCTTTCC
83739600 C
1 C
83739601 CCTTTTCTGT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 11 0.52
11 10 0.48
ACGTcount: A:0.00, C:0.41, G:0.00, T:0.59
Consensus pattern (10 bp):
CTTTCTTTCC
Found at i:83743063 original size:24 final size:24
Alignment explanation
Indices: 83743029--83743077 Score: 89
Period size: 24 Copynumber: 2.0 Consensus size: 24
83743019 GTTCTTTTAG
83743029 TTAGACCCTCAATATATGATTACT
1 TTAGACCCTCAATATATGATTACT
*
83743053 TTAGACTCTCAATATATGATTACT
1 TTAGACCCTCAATATATGATTACT
83743077 T
1 T
83743078 GTGGTTTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.33, C:0.18, G:0.08, T:0.41
Consensus pattern (24 bp):
TTAGACCCTCAATATATGATTACT
Found at i:83747721 original size:18 final size:19
Alignment explanation
Indices: 83747686--83747722 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
83747676 AGTGTTCGTA
83747686 CACACGGGCGTTTGGGATAC
1 CACACGGGCG-TTGGGATAC
83747706 CACACGGGCG-TGGGATA
1 CACACGGGCGTTGGGATA
83747723 AGCGAACAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.22, C:0.24, G:0.38, T:0.16
Consensus pattern (19 bp):
CACACGGGCGTTGGGATAC
Found at i:83748008 original size:15 final size:16
Alignment explanation
Indices: 83747964--83748008 Score: 56
Period size: 16 Copynumber: 2.8 Consensus size: 16
83747954 CCACCTAGCT
*
83747964 TCTCTCCTTGCTTTCCC
1 TCTCTTCTT-CTTTCCC
*
83747981 TCTCTTCTTCTTTCCT
1 TCTCTTCTTCTTTCCC
83747997 TCTCTT-TTCTTT
1 TCTCTTCTTCTTT
83748009 ATTTCTTTCC
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
15 6 0.23
16 12 0.46
17 8 0.31
ACGTcount: A:0.00, C:0.38, G:0.02, T:0.60
Consensus pattern (16 bp):
TCTCTTCTTCTTTCCC
Found at i:83749716 original size:43 final size:43
Alignment explanation
Indices: 83749669--83749771 Score: 206
Period size: 43 Copynumber: 2.4 Consensus size: 43
83749659 TTGGTTTTCA
83749669 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
83749712 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
83749755 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
83749772 TTGAAATGCA
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 60 1.00
ACGTcount: A:0.22, C:0.16, G:0.36, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
Found at i:83749788 original size:29 final size:29
Alignment explanation
Indices: 83749753--83749826 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
83749743 GTTGTGAGAT
* *
83749753 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
83749782 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
83749811 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
83749827 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:83750264 original size:40 final size:40
Alignment explanation
Indices: 83750141--83750403 Score: 289
Period size: 40 Copynumber: 6.6 Consensus size: 40
83750131 TTGAATGATG
* *
83750141 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * * * * *
83750181 TCCGGACTAAGACCCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA-TATA
* *
83750221 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
83750261 TCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
**
83750301 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* ** * * *
83750341 TCCGTGCTAAACCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
83750381 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
83750404 ATCATGCTGG
Statistics
Matches: 190, Mismatches: 31, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
40 172 0.91
41 18 0.09
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:83753663 original size:47 final size:47
Alignment explanation
Indices: 83753609--83754033 Score: 832
Period size: 47 Copynumber: 9.0 Consensus size: 47
83753599 CAGCCAAGAG
* *
83753609 AGTGTATATGTGTAATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753656 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753703 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753750 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753797 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753844 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753891 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753938 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83753985 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
1 AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
83754032 AG
1 AG
83754034 AGTTAAGTCC
Statistics
Matches: 376, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
47 376 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AGTGTATATGTGTGATAAGGCCTAATAGCCGATGTGATGAATGTGAA
Found at i:83754124 original size:40 final size:40
Alignment explanation
Indices: 83754037--83754135 Score: 128
Period size: 40 Copynumber: 2.5 Consensus size: 40
83754027 GTGAAAGAGT
* * *
83754037 TAAGTCCCGAAGGCAATTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGC
* *
83754077 TAAGTCCCGAAGCCATTTGTGCGAGTTACTATAA-CTGAGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGAGC
*
83754117 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
83754136 AACGAGGAGC
Statistics
Matches: 51, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
40 49 0.96
41 2 0.04
ACGTcount: A:0.26, C:0.21, G:0.25, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGAGC
Found at i:83754814 original size:37 final size:37
Alignment explanation
Indices: 83754758--83754836 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
83754748 CCGAGCTCTA
* * *
83754758 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
83754795 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
83754832 AAGAC
1 AAGAC
83754837 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:83762573 original size:26 final size:26
Alignment explanation
Indices: 83762531--83762593 Score: 65
Period size: 26 Copynumber: 2.4 Consensus size: 26
83762521 TATTATCCTT
*
83762531 ATTTTATCCC-TAACAAAATTTTAACG
1 ATTTTA-CCCTTAACAAAAATTTAACG
* * *
83762557 ATTTTACCCTTAGCAAAAATTTGATG
1 ATTTTACCCTTAACAAAAATTTAACG
*
83762583 ATTTTGCCCTT
1 ATTTTACCCTT
83762594 GATAAAATTT
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
25 3 0.10
26 28 0.90
ACGTcount: A:0.32, C:0.19, G:0.08, T:0.41
Consensus pattern (26 bp):
ATTTTACCCTTAACAAAAATTTAACG
Found at i:83767249 original size:40 final size:40
Alignment explanation
Indices: 83767168--83767276 Score: 148
Period size: 40 Copynumber: 2.8 Consensus size: 40
83767158 AAACCAAGTA
* * * * *
83767168 CCTTCGGGATTTAG-CCAGATATAGCTACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
83767207 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
* *
83767247 CCTTCGGGTCTTAGCCCGGATATAGTAACT
1 CCTTCGGGACTTAGCCCGGATATAGCAACT
83767277 NNNNNNNNNN
Statistics
Matches: 62, Mismatches: 7, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
39 13 0.21
40 49 0.79
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:83773698 original size:55 final size:55
Alignment explanation
Indices: 83773614--83773724 Score: 213
Period size: 55 Copynumber: 2.0 Consensus size: 55
83773604 AAATCATATC
*
83773614 TCAAGTTCCAAAACTCGAAAACCAGTTCCGTAAATTTTTCCTGAAACTAGACTCA
1 TCAAGTTCCAAAACTCGAAAACCAGTTCCGTAAATTTTTCCTGAAAATAGACTCA
83773669 TCAAGTTCCAAAACTCGAAAACCAGTTCCGTAAATTTTTCCTGAAAATAGACTCA
1 TCAAGTTCCAAAACTCGAAAACCAGTTCCGTAAATTTTTCCTGAAAATAGACTCA
83773724 T
1 T
83773725 ATGTCCATCT
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.37, C:0.24, G:0.11, T:0.28
Consensus pattern (55 bp):
TCAAGTTCCAAAACTCGAAAACCAGTTCCGTAAATTTTTCCTGAAAATAGACTCA
Found at i:83774962 original size:40 final size:40
Alignment explanation
Indices: 83774881--83775007 Score: 193
Period size: 40 Copynumber: 3.2 Consensus size: 40
83774871 AAACCAAGTA
* * * * *
83774881 CCTTCGGGATTTAG-CCAGATATAGCTACTCGCTCAACTG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
83774920 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
*
83774960 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
83775000 CCTTCGGG
1 CCTTCGGG
83775008 NNNNNNNNNN
Statistics
Matches: 81, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 13 0.16
40 68 0.84
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCAACTCGCACAAATG
Found at i:83777142 original size:45 final size:45
Alignment explanation
Indices: 83777073--83777163 Score: 173
Period size: 45 Copynumber: 2.0 Consensus size: 45
83777063 TCGCTATTCA
*
83777073 TAGTTTTAATATAATCCAAGCACCATGCAACAACAATAATTTTTT
1 TAGTATTAATATAATCCAAGCACCATGCAACAACAATAATTTTTT
83777118 TAGTATTAATATAATCCAAGCACCATGCAACAACAATAATTTTTT
1 TAGTATTAATATAATCCAAGCACCATGCAACAACAATAATTTTTT
83777163 T
1 T
83777164 CTTTTCTTAA
Statistics
Matches: 45, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.41, C:0.18, G:0.07, T:0.35
Consensus pattern (45 bp):
TAGTATTAATATAATCCAAGCACCATGCAACAACAATAATTTTTT
Found at i:83777328 original size:26 final size:26
Alignment explanation
Indices: 83777292--83777344 Score: 106
Period size: 26 Copynumber: 2.0 Consensus size: 26
83777282 CAAACAAGAA
83777292 AACTTATATGAGTAGGCCGAGTTCTT
1 AACTTATATGAGTAGGCCGAGTTCTT
83777318 AACTTATATGAGTAGGCCGAGTTCTT
1 AACTTATATGAGTAGGCCGAGTTCTT
83777344 A
1 A
83777345 TTGTTATGAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.28, C:0.15, G:0.23, T:0.34
Consensus pattern (26 bp):
AACTTATATGAGTAGGCCGAGTTCTT
Found at i:83779596 original size:16 final size:16
Alignment explanation
Indices: 83779575--83779606 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
83779565 TCGGAGATCA
*
83779575 CCTCACATTATCAACG
1 CCTCACACTATCAACG
83779591 CCTCACACTATCAACG
1 CCTCACACTATCAACG
83779607 AGCTATCTCA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.31, C:0.41, G:0.06, T:0.22
Consensus pattern (16 bp):
CCTCACACTATCAACG
Found at i:83784640 original size:23 final size:23
Alignment explanation
Indices: 83784610--83784656 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
83784600 CACCTGTATT
*
83784610 AGTCCAGCCTGAATCAGGTAAGG
1 AGTCCAGCCTAAATCAGGTAAGG
**
83784633 AGTCCAGCCTAAATTGGGTAAGG
1 AGTCCAGCCTAAATCAGGTAAGG
83784656 A
1 A
83784657 ATATATAGTT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.32, C:0.19, G:0.30, T:0.19
Consensus pattern (23 bp):
AGTCCAGCCTAAATCAGGTAAGG
Found at i:83789346 original size:20 final size:20
Alignment explanation
Indices: 83789321--83789365 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
83789311 AGGGACTAAA
* *
83789321 ATGAAAAGTTGTAAAATTTG
1 ATGAAAAATTCTAAAATTTG
*
83789341 ATGAAAAATTCTAAAATTTT
1 ATGAAAAATTCTAAAATTTG
83789361 ATGAA
1 ATGAA
83789366 TACATGTGCT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.49, C:0.02, G:0.13, T:0.36
Consensus pattern (20 bp):
ATGAAAAATTCTAAAATTTG
Found at i:83793604 original size:46 final size:46
Alignment explanation
Indices: 83793554--83793729 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
83793544 TGGTTGAGCA
83793554 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83793600 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
*
83793645 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
83793693 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
83793730 GCGGGTTACA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.57
47 29 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.21, G:0.30, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:83793710 original size:93 final size:93
Alignment explanation
Indices: 83793551--83793722 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
83793541 GGATGGTTGA
* *
83793551 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83793616 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
83793644 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
83793709 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
83793723 CTTATGGGCG
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:83796671 original size:14 final size:14
Alignment explanation
Indices: 83796663--83796695 Score: 57
Period size: 14 Copynumber: 2.4 Consensus size: 14
83796653 TTAAATAAAG
83796663 AGATATAAAGAATA
1 AGATATAAAGAATA
83796677 AGATATAAAGAATA
1 AGATATAAAGAATA
*
83796691 GGATA
1 AGATA
83796696 GAGGAAAATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (14 bp):
AGATATAAAGAATA
Found at i:83804942 original size:47 final size:45
Alignment explanation
Indices: 83804864--83805043 Score: 152
Period size: 47 Copynumber: 3.9 Consensus size: 45
83804854 TTGGGTGATT
83804864 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGA
1 TGAGAG-CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCAT-CAGA
* * * * *
83804912 TGAGGGCAAGTGTAAGA-CATGTTTGGGACATGCTTCAGCCAT-ATTA
1 TGAGAGC-AGTGTAAGACCATGTCTGGGACATGCATC-GGCATCA-GA
* *
83804958 TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCGTCGGCA-CAGAGA
1 TGAGAG-CAGTGTAAGACCATGTCTGGGACAT-GCATCGGCATC--AGA
* * *
83805006 TGAGTGCAGAGTAAGA-CGTGTCTGGGACATGCATCGGC
1 TGAGAGCAGTGTAAGACCATGTCTGGGACATGCATCGGC
83805044 CTCGATAGAG
Statistics
Matches: 107, Mismatches: 16, Indels: 21
0.74 0.11 0.15
Matches are distributed among these distances:
45 8 0.07
46 31 0.29
47 43 0.40
48 24 0.22
49 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.32, T:0.21
Consensus pattern (45 bp):
TGAGAGCAGTGTAAGACCATGTCTGGGACATGCATCGGCATCAGA
Found at i:83805066 original size:94 final size:94
Alignment explanation
Indices: 83804864--83805040 Score: 259
Period size: 94 Copynumber: 1.9 Consensus size: 94
83804854 TTGGGTGATT
* *
83804864 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATCCAGATGAGGGCAAGTGTAAGA
1 TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATCCAGATGAGGGCAAGAGTAAGA
* *
83804929 CATGTTTGGGACATGCTTCAGCCATATTA
66 CATGTCTGGGACATGCATCAGCCATATTA
* * *
83804958 TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCGTCGGCA-CAGAGATGAGTGC-AGAGTAAG
1 TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATC-CAGATGAGGGCAAGAGTAAG
*
83805021 ACGTGTCTGGGACATGCATC
65 ACATGTCTGGGACATGCATC
83805041 GGCCTCGATA
Statistics
Matches: 74, Mismatches: 8, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
93 25 0.34
94 49 0.66
ACGTcount: A:0.28, C:0.19, G:0.32, T:0.21
Consensus pattern (94 bp):
TGAGAGCCAGTGTAAAACCATGTCTGGGACATGGCATCGGCATCCAGATGAGGGCAAGAGTAAGA
CATGTCTGGGACATGCATCAGCCATATTA
Found at i:83820998 original size:45 final size:45
Alignment explanation
Indices: 83820949--83821166 Score: 285
Period size: 45 Copynumber: 4.8 Consensus size: 45
83820939 TCGTAGGCTT
* *
83820949 AATGAAATGAGAGTTGAATGTACCAGCCCCACTGCTCCTAAGTTG
1 AATGAATTGAGAGCTGAATGTACCAGCCCCACTGCTCCTAAGTTG
* *
83820994 AATGAATTGAGAGCTGAATGTACCGGCCCCACTGCTCGC-AGGTTG
1 AATGAATTGAGAGCTGAATGTACCAGCCCCACTGCTC-CTAAGTTG
* * **
83821039 AATGAATTGAGAGCTGAATGAACCAGCCTCACTGCTTGTAAGTTG
1 AATGAATTGAGAGCTGAATGTACCAGCCCCACTGCTCCTAAGTTG
* * **
83821084 AACGAATTGAGAGTTGAATGTACCAGCCCCACTGCTAGTAAGTTTG
1 AATGAATTGAGAGCTGAATGTACCAGCCCCACTGCTCCTAAG-TTG
* *
83821130 AATGAATTGAGAGCTGAATGTACCTGCTCCACTGCTC
1 AATGAATTGAGAGCTGAATGTACCAGCCCCACTGCTC
83821167 GTAGTCTTAA
Statistics
Matches: 150, Mismatches: 20, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
45 114 0.76
46 36 0.24
ACGTcount: A:0.29, C:0.22, G:0.24, T:0.25
Consensus pattern (45 bp):
AATGAATTGAGAGCTGAATGTACCAGCCCCACTGCTCCTAAGTTG
Found at i:83826875 original size:142 final size:138
Alignment explanation
Indices: 83826582--83827006 Score: 624
Period size: 138 Copynumber: 3.1 Consensus size: 138
83826572 ATAAAATAGT
*
83826582 TATAATTAATATATGAGTTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
1 TATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
* *
83826647 ATATAAAT-TGTTATATTAATTAATTTCGGTCAAAATATAAAAGAAAT-GAATTTTAATATTCTT
66 ATATAAATATATTATATTAATTAATTTCGGTCAAAATATAAAA-AAATAGAA-ATTAATATTCTT
83826710 TTGGAAAGAA
129 TTGGAAAGAA
* * * *
83826720 TATAATTAATATATGAATTTGATTCATACAAAATATTAATTATATATGTTTTACTGAATTTATTT
1 TATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
* *
83826785 ATATAAATATTTATATTAATTAATTAATTTCGGTCAATATATAAAAAAAGTAGAAATTAATATTC
66 ATATAAATATAT-TA-T-ATTAATTAATTTCGGTCAAAATATAAAAAAA-TAGAAATTAATATTC
*
83826850 TTTTGGAAATAA
127 TTTTGGAAAGAA
83826862 TATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
1 TATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
* * * *
83826927 ATATAAACA-ATTATATTAATTAATTCCAGTCAAAATAT-AAAAGATATGAAAATTAATATTCTT
66 ATATAAATATATTATATTAATTAATTTCGGTCAAAATATAAAAAAATA-G-AAATTAATATTCTT
83826990 TTGGAAAGAA
129 TTGGAAAGAA
83827000 TATAATT
1 TATAATT
83827007 CTTTTTTTTT
Statistics
Matches: 259, Mismatches: 20, Indels: 16
0.88 0.07 0.05
Matches are distributed among these distances:
136 2 0.01
137 6 0.02
138 119 0.46
139 3 0.01
140 4 0.02
141 5 0.02
142 117 0.45
143 3 0.01
ACGTcount: A:0.44, C:0.05, G:0.08, T:0.43
Consensus pattern (138 bp):
TATAATTAATATATGAATTTGATTCATACAAAATATTAATTGTATATATTTTACCGAATTTATTA
ATATAAATATATTATATTAATTAATTTCGGTCAAAATATAAAAAAATAGAAATTAATATTCTTTT
GGAAAGAA
Found at i:83837740 original size:49 final size:47
Alignment explanation
Indices: 83837666--83838123 Score: 684
Period size: 47 Copynumber: 9.6 Consensus size: 47
83837656 TATTTGAATA
* * *
83837666 AATGAGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
83837713 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
83837762 AATGTGAAAGTGTATATATGTGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATA--TGTGATAAGGCCTAATGGCCGATGTGATG
* *
83837811 AATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
*
83837858 AATGTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
83837905 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
83837952 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCGATGTGATG
83838001 AATGTGAAAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTG--AAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * *
83838050 AATGTGAAAGTGTATATATGTGA-CAGGTCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGG-CCTAATGGCCGATGTGATG
* *
83838097 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
83838124 TCCCGAAGGG
Statistics
Matches: 380, Mismatches: 21, Indels: 19
0.90 0.05 0.05
Matches are distributed among these distances:
46 3 0.01
47 199 0.52
48 2 0.01
49 170 0.45
51 6 0.02
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:83838104 original size:239 final size:238
Alignment explanation
Indices: 83837666--83838123 Score: 722
Period size: 239 Copynumber: 1.9 Consensus size: 238
83837656 TATTTGAATA
* *
83837666 AATGAGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATA
1 AATGAGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATATA
83837731 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGTGATAAGGCCTA
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATA-GTGTGATAAGGCCTA
* * *
83837796 ATAGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCTAATAGCCGATGTGATGAAT
130 ATAGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAAT
* *
83837861 GTGAAAGTGTATATATGTGGTAAGGCCTAATGGCCGATGTGATG
195 GTGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATG
* * *
83837905 AATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGACGTGATGAATGTGAAAGTGTATATA
1 AATGAGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATATA
83837970 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAAAGTGTATATA-TGTGATAAGGCCT
66 TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTG--AAAGTGTATATAGTGTGATAAGGCCT
* * * * * *
83838034 AATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA-CAGGTCCGAGTGGCCAACGTGATGG
129 AATAGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGG-CCGAATAGCCAACGTGATGA
83838098 ATGTGAAAGTGTATAAATGTGATAAG
193 ATGTGAAAGTGTATAAATGTGATAAG
83838124 TCCCGAAGGG
Statistics
Matches: 200, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
238 3 0.01
239 185 0.93
241 12 0.06
ACGTcount: A:0.34, C:0.09, G:0.29, T:0.29
Consensus pattern (238 bp):
AATGAGAAAGTGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATGTGAAAGTGTATATA
TATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATAGTGTGATAAGGCCTAA
TAGCCGATGTGATGAATGTGAAAATGTATATATGTGATAAGGCCGAATAGCCAACGTGATGAATG
TGAAAGTGTATAAATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:83838343 original size:37 final size:37
Alignment explanation
Indices: 83838242--83838343 Score: 168
Period size: 37 Copynumber: 2.8 Consensus size: 37
83838232 CCGAGCTCTA
* *
83838242 AAGACCCGATGACTACGTGTGGAGATTATGTTCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
83838279 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
1 AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
* *
83838316 AAGACCCGATAACTTCGTGTGGAGATTT
1 AAGACCCGATGACTACGTGTGGAGATTT
83838344 CGTCTGAGCT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.25, C:0.18, G:0.30, T:0.27
Consensus pattern (37 bp):
AAGACCCGATGACTACGTGTGGAGATTTTGTCCGGGT
Found at i:83843139 original size:19 final size:20
Alignment explanation
Indices: 83843115--83843152 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
83843105 GGTACCACCA
83843115 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
83843134 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
83843153 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:83843493 original size:93 final size:93
Alignment explanation
Indices: 83843382--83843552 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
83843372 GCCCCTAAGT
* * *
83843382 GAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
83843447 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
83843475 GAACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
83843540 CGAGTTCGGATGC
66 CGAGTTCGGATGC
83843553 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.30, C:0.29, G:0.19, T:0.22
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACAAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:83843549 original size:46 final size:46
Alignment explanation
Indices: 83843381--83843549 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
83843371 CGCCCCTAAG
* * * * *
83843381 TGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAA
* * *
83843427 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-T-CA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCATAAA
* *
83843474 CGAACTCGGACTCAACTCAACAAGTTCGGACATTTGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAA
83843520 TGAACTCGGACTCAACTCAACGAGTTCGGA
1 TGAACTCGGACTCAACTCAACGAGTTCGGA
83843550 TGCTCAACCA
Statistics
Matches: 101, Mismatches: 15, Indels: 14
0.78 0.12 0.11
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 1 0.01
46 56 0.55
47 29 0.29
48 1 0.01
49 2 0.02
50 4 0.04
ACGTcount: A:0.31, C:0.28, G:0.19, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAA
Found at i:83845349 original size:41 final size:41
Alignment explanation
Indices: 83845292--83845370 Score: 149
Period size: 41 Copynumber: 1.9 Consensus size: 41
83845282 TATGGCATAA
*
83845292 TTCAAGTACTCATCCGGGGTACAAGATAGCTCATCAAATAT
1 TTCAAGCACTCATCCGGGGTACAAGATAGCTCATCAAATAT
83845333 TTCAAGCACTCATCCGGGGTACAAGATAGCTCATCAAA
1 TTCAAGCACTCATCCGGGGTACAAGATAGCTCATCAAA
83845371 CACGCAAATA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.34, C:0.24, G:0.18, T:0.24
Consensus pattern (41 bp):
TTCAAGCACTCATCCGGGGTACAAGATAGCTCATCAAATAT
Found at i:83847985 original size:43 final size:41
Alignment explanation
Indices: 83847898--83847993 Score: 129
Period size: 43 Copynumber: 2.3 Consensus size: 41
83847888 TCCCAGACAG
* *
83847898 GGTCTTACACGAATCAAATACGATGCCGATGTCCTAGACAT
1 GGTCTTACACGAATCAAATACGATGCCAATGTCCTAAACAT
* *
83847939 GGTCTTACACGTAATCACATATCGATGCCAATGTCCTAAACGT
1 GGTCTTACACG-AATCAAATA-CGATGCCAATGTCCTAAACAT
*
83847982 GGTCTCACACGA
1 GGTCTTACACGA
83847994 GAACACATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
41 11 0.23
42 9 0.19
43 28 0.58
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (41 bp):
GGTCTTACACGAATCAAATACGATGCCAATGTCCTAAACAT
Found at i:83848001 original size:43 final size:43
Alignment explanation
Indices: 83847918--83848003 Score: 111
Period size: 43 Copynumber: 2.0 Consensus size: 43
83847908 GAATCAAATA
* * * *
83847918 CGATGCCGATGTCCTAGACATGGTCTTACACGTAATCACATAT
1 CGATGCCAATGTCCTAAACATGGTCTCACACGTAAACACATAT
*
83847961 CGATGCCAATGTCCTAAACGTGGTCTCACACG-AGAACACATAT
1 CGATGCCAATGTCCTAAACATGGTCTCACACGTA-AACACATAT
83848004 AAGAAATCCT
Statistics
Matches: 37, Mismatches: 5, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
42 1 0.03
43 36 0.97
ACGTcount: A:0.30, C:0.27, G:0.19, T:0.24
Consensus pattern (43 bp):
CGATGCCAATGTCCTAAACATGGTCTCACACGTAAACACATAT
Found at i:83849884 original size:18 final size:20
Alignment explanation
Indices: 83849861--83849899 Score: 64
Period size: 18 Copynumber: 2.0 Consensus size: 20
83849851 TTCCATATAT
83849861 TATTTTAAAAC-AT-AATCA
1 TATTTTAAAACTATCAATCA
83849879 TATTTTAAAACTATCAATCA
1 TATTTTAAAACTATCAATCA
83849899 T
1 T
83849900 TCAATCAGTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 11 0.58
19 2 0.11
20 6 0.32
ACGTcount: A:0.46, C:0.13, G:0.00, T:0.41
Consensus pattern (20 bp):
TATTTTAAAACTATCAATCA
Found at i:83851217 original size:40 final size:38
Alignment explanation
Indices: 83851170--83851304 Score: 144
Period size: 38 Copynumber: 3.5 Consensus size: 38
83851160 GAATCCAGTC
* **
83851170 ACCAGCACAAAACTTGCGGGACTTTAAGCTTGAATATAAT
1 ACCAGCACAAAACCTGCGGGA-TTTAA-CCCGAATATAAT
* * *
83851210 ACCAGCACTAAGCCTGCGGGATTTAACCCGGATATAAT
1 ACCAGCACAAAACCTGCGGGATTTAACCCGAATATAAT
* * * *
83851248 ACCAGCACGAAGCCTGTGGGATTTAACCCGAATATGAT
1 ACCAGCACAAAACCTGCGGGATTTAACCCGAATATAAT
* *
83851286 ACCAGCACGAAGCCTGCGG
1 ACCAGCACAAAACCTGCGG
83851305 ACCTTTAAGC
Statistics
Matches: 84, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
38 61 0.73
39 5 0.06
40 18 0.21
ACGTcount: A:0.33, C:0.25, G:0.22, T:0.20
Consensus pattern (38 bp):
ACCAGCACAAAACCTGCGGGATTTAACCCGAATATAAT
Found at i:83851254 original size:38 final size:38
Alignment explanation
Indices: 83851203--83851321 Score: 168
Period size: 38 Copynumber: 3.1 Consensus size: 38
83851193 TTAAGCTTGA
*
83851203 ATATAATACCAGCACTAAGCCTGCGGGATTTAACCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
* *
83851241 ATATAATACCAGCACGAAGCCTGTGGGATTTAACCCGA
1 ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
*
83851279 ATATGATACCAGCACGAAGCCTGC-GGACCTTTAAGCCCGG
1 ATATAATACCAGCACGAAGCCTGCGGGA--TTTAA-CCCGG
83851319 ATA
1 ATA
83851322 CACATCAAAT
Statistics
Matches: 72, Mismatches: 6, Indels: 4
0.88 0.07 0.05
Matches are distributed among these distances:
37 3 0.04
38 57 0.79
39 5 0.07
40 7 0.10
ACGTcount: A:0.32, C:0.26, G:0.22, T:0.20
Consensus pattern (38 bp):
ATATAATACCAGCACGAAGCCTGCGGGATTTAACCCGG
Found at i:83857843 original size:43 final size:43
Alignment explanation
Indices: 83857796--83857900 Score: 149
Period size: 43 Copynumber: 2.4 Consensus size: 43
83857786 TCCTAAAGAG
* *
83857796 GGTCTTACACGAAATCACAATACGAA-GCCAATGTCTCAGACAT
1 GGTCTTACACGTAATCACAATAC-AATGCCAATGTCCCAGACAT
*
83857839 GGTCTTACACGTAATCTCAATACAATGCCAATGTCCCAGACAT
1 GGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGACAT
* *
83857882 GGTGTTACATGTAATCACA
1 GGTCTTACACGTAATCACA
83857901 TCTCGATAAC
Statistics
Matches: 55, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 2 0.04
43 53 0.96
ACGTcount: A:0.34, C:0.25, G:0.16, T:0.25
Consensus pattern (43 bp):
GGTCTTACACGTAATCACAATACAATGCCAATGTCCCAGACAT
Found at i:83864096 original size:11 final size:11
Alignment explanation
Indices: 83864080--83864105 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
83864070 CGAAGCCTAC
83864080 ATCACAATAAT
1 ATCACAATAAT
83864091 ATCACAATAAT
1 ATCACAATAAT
83864102 ATCA
1 ATCA
83864106 TACATGCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.54, C:0.19, G:0.00, T:0.27
Consensus pattern (11 bp):
ATCACAATAAT
Found at i:83865124 original size:19 final size:19
Alignment explanation
Indices: 83865089--83865136 Score: 53
Period size: 20 Copynumber: 2.5 Consensus size: 19
83865079 GTGTGACGCC
*
83865089 CACGAGCCCATT-GGGCCAA
1 CACG-GCCCATTAGGCCCAA
83865108 CACGGCCCATCTAGGCCCAA
1 CACGGCCCAT-TAGGCCCAA
*
83865128 CATGGCCCA
1 CACGGCCCA
83865137 AAACTACCTA
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
18 6 0.24
19 5 0.20
20 14 0.56
ACGTcount: A:0.25, C:0.42, G:0.23, T:0.10
Consensus pattern (19 bp):
CACGGCCCATTAGGCCCAA
Found at i:83867162 original size:42 final size:43
Alignment explanation
Indices: 83867088--83867194 Score: 112
Period size: 42 Copynumber: 2.5 Consensus size: 43
83867078 GACTTCTGTT
* * * *
83867088 TTACGTGTAAGACCATGTCTAGGACATCGGCATCG-TATCTGA
1 TTACATGTAAGACCCTGTCTGGGAAATCGGCATCGATATCTGA
* * *
83867130 TTTCATGTAAGACCCTGTCTGGGAAAGT-GGCATCGATGTTTGA
1 TTACATGTAAGACCCTGTCTGGGAAA-TCGGCATCGATATCTGA
83867173 TTACATGTAAGACCAC-GTCTGG
1 TTACATGTAAGACC-CTGTCTGG
83867195 AACGTTGGTA
Statistics
Matches: 54, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
42 28 0.52
43 25 0.46
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.25, T:0.30
Consensus pattern (43 bp):
TTACATGTAAGACCCTGTCTGGGAAATCGGCATCGATATCTGA
Found at i:83879971 original size:42 final size:41
Alignment explanation
Indices: 83879896--83879977 Score: 119
Period size: 42 Copynumber: 2.0 Consensus size: 41
83879886 AGAACTCCAA
* * * *
83879896 TTCGAGGAATTCATCATACAGGATGTTTTACTTCTTTCCCNG
1 TTCGAGGAATTCATCATACAGGAAGTGTCACTTCTCTCCC-G
83879938 TTCGAGGAATTCATCATACAGGAAGTGTCACTTCTCTCCC
1 TTCGAGGAATTCATCATACAGGAAGTGTCACTTCTCTCCC
83879978 TATCTTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 36 1.00
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.34
Consensus pattern (41 bp):
TTCGAGGAATTCATCATACAGGAAGTGTCACTTCTCTCCCG
Found at i:83884282 original size:43 final size:42
Alignment explanation
Indices: 83884208--83884314 Score: 103
Period size: 43 Copynumber: 2.5 Consensus size: 42
83884198 ATACATGTTA
**
83884208 TCGTGTAAGACCACGTCTGGGATGTTCGCATCGACT-TCTG-TT
1 TCGTGTAAGACCACGTCTGGGATCATCGCATC-A-TATCTGATT
* *
83884250 TACGTGTAAGACCATGTTTGGGA-CATCGGCATCATATCTGATT
1 T-CGTGTAAGACCACGTCTGGGATCATC-GCATCATATCTGATT
* *
83884293 TCGTGTAAGACCCCATCTGGGA
1 TCGTGTAAGACCACGTCTGGGA
83884315 CTGTGGCATC
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
41 1 0.02
42 25 0.47
43 27 0.51
ACGTcount: A:0.21, C:0.22, G:0.25, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGTCTGGGATCATCGCATCATATCTGATT
Found at i:83893870 original size:194 final size:194
Alignment explanation
Indices: 83893541--83893927 Score: 756
Period size: 194 Copynumber: 2.0 Consensus size: 194
83893531 GTGGCAAGGG
*
83893541 TGACGCCACTAGGCTCCTAAAAAGGTGGCGTGTGAAGCATTGGGGAAGGCATGGGATCGATTCCC
1 TGACGCCACTAAGCTCCTAAAAAGGTGGCGTGTGAAGCATTGGGGAAGGCATGGGATCGATTCCC
83893606 AGTGTTGACAAATAGATGCATTTATTTTTAAGTGCTGGAGGGGTAAGTGTTGGAGGCCCAGTGGA
66 AGTGTTGACAAATAGATGCATTTATTTTTAAGTGCTGGAGGGGTAAGTGTTGGAGGCCCAGTGGA
*
83893671 TTCTGCTAAAGGAAAGTTTGAATCAGACTAAATGCTTGAATTAAGGAGTGATAAGGGGAGAGAA
131 TTCTGCTAAAGGAAAGTTTGAATCAGACTAAATGCTTGAATTAAGAAGTGATAAGGGGAGAGAA
83893735 TGACGCCACTAAGCTCCTAAAAAGGTGGCGTGTGAAGCATTGGGGAAGGCATGGGATCGATTCCC
1 TGACGCCACTAAGCTCCTAAAAAGGTGGCGTGTGAAGCATTGGGGAAGGCATGGGATCGATTCCC
83893800 AGTGTTGACAAATAGATGCATTTATTTTTAAGTGCTGGAGGGGTAAGTGTTGGAGGCCCAGTGGA
66 AGTGTTGACAAATAGATGCATTTATTTTTAAGTGCTGGAGGGGTAAGTGTTGGAGGCCCAGTGGA
83893865 TTCTGCTAAAGGAAAGTTTGAATCAGACTAAATGCTTGAATTAAGAAGTGATAAGGGGAGAGA
131 TTCTGCTAAAGGAAAGTTTGAATCAGACTAAATGCTTGAATTAAGAAGTGATAAGGGGAGAGA
83893928 TTTAAGGGAT
Statistics
Matches: 191, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
194 191 1.00
ACGTcount: A:0.30, C:0.13, G:0.32, T:0.25
Consensus pattern (194 bp):
TGACGCCACTAAGCTCCTAAAAAGGTGGCGTGTGAAGCATTGGGGAAGGCATGGGATCGATTCCC
AGTGTTGACAAATAGATGCATTTATTTTTAAGTGCTGGAGGGGTAAGTGTTGGAGGCCCAGTGGA
TTCTGCTAAAGGAAAGTTTGAATCAGACTAAATGCTTGAATTAAGAAGTGATAAGGGGAGAGAA
Found at i:83902236 original size:40 final size:40
Alignment explanation
Indices: 83902176--83902502 Score: 442
Period size: 40 Copynumber: 8.2 Consensus size: 40
83902166 CGAAATTTAG
* * * *
83902176 CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
83902216 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
* * * *
83902256 CCAGAT-ATATCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
83902296 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
83902336 CCAGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
83902376 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
83902416 CCAGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * *
83902456 CCGGATAAAATCACTAGCACAAATGCCTTCGAGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
83902496 CCGGATA
1 CCGGATA
83902503 TCATTCAAAT
Statistics
Matches: 259, Mismatches: 26, Indels: 4
0.90 0.09 0.01
Matches are distributed among these distances:
39 2 0.01
40 253 0.98
41 4 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:83910768 original size:40 final size:40
Alignment explanation
Indices: 83910698--83910943 Score: 275
Period size: 40 Copynumber: 6.2 Consensus size: 40
83910688 CGGAATTTAG
* * * *
83910698 CCGGATATAACCACAAGCACAATTG-CTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* * * * *
83910737 CCGGGT-ATAGCAACTCGCACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACTAGCACAAATGCCTTCGGGTCTTAAC
** * *
83910777 CCTAAT-ATATCAACTCA-CACAAATGCCTTCGGGTCTTAGC
1 CCGGATAAAATC-ACT-AGCACAAATGCCTTCGGGTCTTAAC
*
83910817 CCAGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
83910857 CCAGATAAAATCACTAGCATAAATGCCTTCGGGTCTTAAC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
* *
83910897 CCGGATAAAATCACTAGCACAAATGCCTTCGGGACTTAGC
1 CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
83910937 CCGGATA
1 CCGGATA
83910944 TCATTCAAAT
Statistics
Matches: 180, Mismatches: 22, Indels: 9
0.85 0.10 0.04
Matches are distributed among these distances:
38 2 0.01
39 16 0.09
40 158 0.88
41 4 0.02
ACGTcount: A:0.31, C:0.28, G:0.18, T:0.23
Consensus pattern (40 bp):
CCGGATAAAATCACTAGCACAAATGCCTTCGGGTCTTAAC
Found at i:83918017 original size:43 final size:43
Alignment explanation
Indices: 83917969--83918068 Score: 146
Period size: 43 Copynumber: 2.3 Consensus size: 43
83917959 CAGATATAGC
* * *
83917969 CTTACATGTTATCATATATCGATGCCACTGTCCCAGACAGGGT
1 CTTACATGTAATCATATAACGATGCCAATGTCCCAGACAGGGT
* * *
83918012 CTTACACGAAATCATATAACGATGCCAATGTCCCAGACATGGT
1 CTTACATGTAATCATATAACGATGCCAATGTCCCAGACAGGGT
83918055 CTTACATGTAATCA
1 CTTACATGTAATCA
83918069 CATTCGGTAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.31, C:0.25, G:0.16, T:0.28
Consensus pattern (43 bp):
CTTACATGTAATCATATAACGATGCCAATGTCCCAGACAGGGT
Found at i:83921363 original size:32 final size:32
Alignment explanation
Indices: 83921327--83921388 Score: 97
Period size: 32 Copynumber: 1.9 Consensus size: 32
83921317 CTCTTACAAT
*
83921327 TGTACCTTCAGCTGTTTCAATTCAGCAGGAAC
1 TGTACCTTCAGCTCTTTCAATTCAGCAGGAAC
* *
83921359 TGTACCTTTAGCTCTTTGAATTCAGCAGGA
1 TGTACCTTCAGCTCTTTCAATTCAGCAGGA
83921389 GCCATTCTAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.24, C:0.23, G:0.19, T:0.34
Consensus pattern (32 bp):
TGTACCTTCAGCTCTTTCAATTCAGCAGGAAC
Found at i:83930657 original size:47 final size:48
Alignment explanation
Indices: 83930548--83930814 Score: 159
Period size: 47 Copynumber: 5.7 Consensus size: 48
83930538 TCATTGTGGA
* * * ** * *
83930548 CTAGTGTAAGA-CATGTCTGAGACATGCATTAGCCA-CATTATGAGAG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAGACATCAAGACGAGTG
* *
83930594 CCAGTGTAAGACCATGTCTGGGACATGGCATCAG-CATCGAGACGAGTG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCAGACATCAAGACGAGTG
* * * *
83930642 CTAGTGTAAGA-CATGTTTGGGATATACATC-GACCTCAAGACGTAAGT-
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAGACATCAAGACG--AGTG
* *
83930689 C-AGTGTAAGA-CATGTCTGGGACATGCATC-GAC-TACGAGATGA-TAG
1 CTAGTGTAAGACCATGTCTGGGACATGCATCAGACAT-CAAGACGAGT-G
* * * * *
83930734 -TCAGAGTAAGACCATGTCTGGGACGTGGCAT-TGACAT-AAG-CTATGAG
1 CT-AGTGTAAGACCATGTCTGGGACAT-GCATCAGACATCAAGACGA-GTG
*
83930781 CTAGTGTAAGACCGTGTCTGGGACATGGCATCAG
1 CTAGTGTAAGACCATGTCTGGGACAT-GCATCAG
83930815 CACCTTACCC
Statistics
Matches: 173, Mismatches: 29, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.01
44 1 0.01
45 2 0.01
46 64 0.37
47 70 0.40
48 34 0.20
49 1 0.01
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
CTAGTGTAAGACCATGTCTGGGACATGCATCAGACATCAAGACGAGTG
Found at i:83930736 original size:46 final size:46
Alignment explanation
Indices: 83930595--83930757 Score: 156
Period size: 46 Copynumber: 3.5 Consensus size: 46
83930585 TTATGAGAGC
83930595 CAGTGTAAGACCATGTCTGGGACATGGCATC-AGC-ATCGAGACG-AGT
1 CAGTGTAAGA-CATGTCTGGGACAT-GCATCGAGCTA-CGAGACGTAGT
* * * * *
83930641 GCTAGTGTAAGACATGTTTGGGATATACATCGACCT-CAAGACGTAAGT
1 -C-AGTGTAAGACATGTCTGGGACATGCATCGAGCTACGAGACGT-AGT
*
83930689 CAGTGTAAGACATGTCTGGGACATGCATCGA-CTACGAGATGATAGT
1 CAGTGTAAGACATGTCTGGGACATGCATCGAGCTACGAGACG-TAGT
*
83930735 CAGAGTAAGACCATGTCTGGGAC
1 CAGTGTAAGA-CATGTCTGGGAC
83930758 GTGGCATTGA
Statistics
Matches: 97, Mismatches: 11, Indels: 16
0.78 0.09 0.13
Matches are distributed among these distances:
45 2 0.02
46 54 0.56
47 29 0.30
48 12 0.12
ACGTcount: A:0.30, C:0.19, G:0.28, T:0.23
Consensus pattern (46 bp):
CAGTGTAAGACATGTCTGGGACATGCATCGAGCTACGAGACGTAGT
Found at i:83930803 original size:140 final size:140
Alignment explanation
Indices: 83930550--83930803 Score: 302
Period size: 140 Copynumber: 1.8 Consensus size: 140
83930540 ATTGTGGACT
* * *
83930550 AGTGTAAGACATGTCTGAGACATGCATTAGCCACATTATGAGAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGAGACATGCATGAGCCACATGATGAGAGCCAGAGTAAGACCATGTCTGG
* * *
83930615 GACATGGCATCAGCATCGAGACGAGTGCTAGTGTAAGACATGTTTGGGATATACATCGACCTCAA
66 GACATGGCATCAGCATCAAGACGAGAGCTAGTGTAAGACATGTCTGGGATATACATCGACCTCAA
83930680 GACGTAAGTC
131 GACGTAAGTC
* * * *
83930690 AGTGTAAGACATGTCTGGGACATGCATCGA-CTACGA-GATGATAGTCAGAGTAAGACCATGTCT
1 AGTGTAAGACATGTCTGAGACATGCAT-GAGCCAC-ATGATGAGAGCCAGAGTAAGACCATGTCT
* * * *
83930753 GGGACGTGGCAT-TGACAT-AAG-CTATGAGCTAGTGTAAGACCGTGTCTGGGA
64 GGGACATGGCATCAG-CATCAAGACGA-GAGCTAGTGTAAGA-CATGTCTGGGA
83930804 CATGGCATCA
Statistics
Matches: 95, Mismatches: 14, Indels: 10
0.80 0.12 0.08
Matches are distributed among these distances:
138 2 0.02
139 16 0.17
140 75 0.79
141 2 0.02
ACGTcount: A:0.30, C:0.18, G:0.28, T:0.24
Consensus pattern (140 bp):
AGTGTAAGACATGTCTGAGACATGCATGAGCCACATGATGAGAGCCAGAGTAAGACCATGTCTGG
GACATGGCATCAGCATCAAGACGAGAGCTAGTGTAAGACATGTCTGGGATATACATCGACCTCAA
GACGTAAGTC
Found at i:83933599 original size:21 final size:21
Alignment explanation
Indices: 83933573--83933612 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
83933563 TTGAATTGGC
*
83933573 CACACGGACGTGTGCCCCTTT
1 CACACGGACATGTGCCCCTTT
*
83933594 CACACGGGCATGTGCCCCT
1 CACACGGACATGTGCCCCT
83933613 ATGTCAAGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.15, C:0.40, G:0.25, T:0.20
Consensus pattern (21 bp):
CACACGGACATGTGCCCCTTT
Found at i:83937335 original size:36 final size:36
Alignment explanation
Indices: 83937294--83937364 Score: 142
Period size: 36 Copynumber: 2.0 Consensus size: 36
83937284 ACATAAAGTA
83937294 AGCTTTTGTAGCCTAGTAAGTCATAAGCAAATAAAT
1 AGCTTTTGTAGCCTAGTAAGTCATAAGCAAATAAAT
83937330 AGCTTTTGTAGCCTAGTAAGTCATAAGCAAATAAA
1 AGCTTTTGTAGCCTAGTAAGTCATAAGCAAATAAA
83937365 CTATTTAATA
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.39, C:0.14, G:0.17, T:0.30
Consensus pattern (36 bp):
AGCTTTTGTAGCCTAGTAAGTCATAAGCAAATAAAT
Found at i:83944286 original size:42 final size:42
Alignment explanation
Indices: 83944222--83944306 Score: 143
Period size: 42 Copynumber: 2.0 Consensus size: 42
83944212 TAAACTCTGT
83944222 TTAGAGGCAAAAGTGATCTTCTAAGAAATGCTTGAAAGAGTG
1 TTAGAGGCAAAAGTGATCTTCTAAGAAATGCTTGAAAGAGTG
* * *
83944264 TTAGAGGCAAAAGTGATTTTCTAAGATATGCTTTAAAGAGTG
1 TTAGAGGCAAAAGTGATCTTCTAAGAAATGCTTGAAAGAGTG
83944306 T
1 T
83944307 GAGCGCTTGC
Statistics
Matches: 40, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.36, C:0.08, G:0.25, T:0.31
Consensus pattern (42 bp):
TTAGAGGCAAAAGTGATCTTCTAAGAAATGCTTGAAAGAGTG
Found at i:83960225 original size:17 final size:18
Alignment explanation
Indices: 83960198--83960232 Score: 63
Period size: 17 Copynumber: 2.0 Consensus size: 18
83960188 GGCTGAAATG
83960198 GGCTGTGTGGGCCCCACA
1 GGCTGTGTGGGCCCCACA
83960216 GGCT-TGTGGGCCCCACA
1 GGCTGTGTGGGCCCCACA
83960233 CGAGTAAACT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 13 0.76
18 4 0.24
ACGTcount: A:0.11, C:0.34, G:0.37, T:0.17
Consensus pattern (18 bp):
GGCTGTGTGGGCCCCACA
Found at i:83963802 original size:35 final size:35
Alignment explanation
Indices: 83963760--83963831 Score: 135
Period size: 35 Copynumber: 2.1 Consensus size: 35
83963750 TGAAGATTTT
*
83963760 GGTGACTAACATGTTTGATTGAATGTATGTGATTA
1 GGTGACTAACATGTTCGATTGAATGTATGTGATTA
83963795 GGTGACTAACATGTTCGATTGAATGTATGTGATTA
1 GGTGACTAACATGTTCGATTGAATGTATGTGATTA
83963830 GG
1 GG
83963832 CAATTTAGCC
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.28, C:0.07, G:0.28, T:0.38
Consensus pattern (35 bp):
GGTGACTAACATGTTCGATTGAATGTATGTGATTA
Found at i:83967359 original size:52 final size:52
Alignment explanation
Indices: 83967277--83967383 Score: 196
Period size: 52 Copynumber: 2.1 Consensus size: 52
83967267 TTAAGAATTT
* *
83967277 TGAGACTAGGCATGCAGGTTGGCTATATTAAGATACAAGGATCTCAAAAACA
1 TGAGACTAGACATGCAGGTTGGCTAAATTAAGATACAAGGATCTCAAAAACA
83967329 TGAGACTAGACATGCAGGTTGGCTAAATTAAGATACAAGGATCTCAAAAACA
1 TGAGACTAGACATGCAGGTTGGCTAAATTAAGATACAAGGATCTCAAAAACA
83967381 TGA
1 TGA
83967384 AACTCATAAA
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
52 53 1.00
ACGTcount: A:0.40, C:0.15, G:0.22, T:0.22
Consensus pattern (52 bp):
TGAGACTAGACATGCAGGTTGGCTAAATTAAGATACAAGGATCTCAAAAACA
Found at i:83975345 original size:43 final size:43
Alignment explanation
Indices: 83975209--83975365 Score: 185
Period size: 43 Copynumber: 3.7 Consensus size: 43
83975199 TGTGTTATCG
83975209 TGTAAGACCACGTCTGGGACATTGGCATCGACT-TTTGAGTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TATTTGA-TTACA
* * * * * *
83975253 TGTAAGACCACGTCTAGGACGTTGGCATTG-TATCTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
**
83975295 TGTAAGACC-CTGTCTGGGACAAAGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATTTGATTACA
*
83975338 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
83975366 TGTACGAGCT
Statistics
Matches: 92, Mismatches: 17, Indels: 9
0.78 0.14 0.08
Matches are distributed among these distances:
41 1 0.01
42 27 0.29
43 36 0.39
44 28 0.30
ACGTcount: A:0.25, C:0.20, G:0.26, T:0.29
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTTGATTACA
Found at i:83975380 original size:86 final size:86
Alignment explanation
Indices: 83975206--83975369 Score: 262
Period size: 85 Copynumber: 1.9 Consensus size: 86
83975196 ATATGTGTTA
**
83975206 TCGTGTAAGACCACGTCTGGGACATTGGCATCGACTTTTGAGTTACATGTAAGACCACGTCTAGG
1 TCGTGTAAGACCACGTCTGGGACAAAGGCATCGACTTTTGAGTTACATGTAAGACCACGTCTAGG
83975271 ACGTTGGCATTGTATCTGATT
66 ACGTTGGCATTGTATCTGATT
*
83975292 TCGTGTAAGACC-CTGTCTGGGACAAAGGCATCGA-TATTTGA-TTACATGTAAGACCACGTCTG
1 TCGTGTAAGACCAC-GTCTGGGACAAAGGCATCGACT-TTTGAGTTACATGTAAGACCACGTCTA
83975354 GGACGTTGGCATTGTA
64 GGACGTTGGCATTGTA
83975370 CGAGCTTTTC
Statistics
Matches: 73, Mismatches: 3, Indels: 5
0.90 0.04 0.06
Matches are distributed among these distances:
85 38 0.52
86 35 0.48
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (86 bp):
TCGTGTAAGACCACGTCTGGGACAAAGGCATCGACTTTTGAGTTACATGTAAGACCACGTCTAGG
ACGTTGGCATTGTATCTGATT
Found at i:83977086 original size:57 final size:57
Alignment explanation
Indices: 83977025--83977160 Score: 184
Period size: 59 Copynumber: 2.4 Consensus size: 57
83977015 CTTAATATGG
*
83977025 ATTACCCGTCTGGGCTAAATCCAATTTATAACCTAACTCA-AGAGGGCTTACATTAGA
1 ATTACCCGTCTGGGCTAAATCCAATTTATAAACTAACTCAGA-AGGGCTTACATTAGA
** *
83977082 ATTACCCGTCTGGAGGAAAAATCCAATTTATAAACTACCTCAGAAGGGCTTACATTAGA
1 ATTACCCGTCT-G-GGCTAAATCCAATTTATAAACTAACTCAGAAGGGCTTACATTAGA
**
83977141 ATTACCTATCTGGGCTAAAT
1 ATTACCCGTCTGGGCTAAAT
83977161 TCTATCTGCA
Statistics
Matches: 68, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
57 17 0.25
58 2 0.03
59 48 0.71
60 1 0.01
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (57 bp):
ATTACCCGTCTGGGCTAAATCCAATTTATAAACTAACTCAGAAGGGCTTACATTAGA
Found at i:83980769 original size:49 final size:49
Alignment explanation
Indices: 83980692--83980930 Score: 271
Period size: 49 Copynumber: 4.8 Consensus size: 49
83980682 TAGCCAAAGC
* * * *
83980692 TATCTGGTACGCATAGTAGCCTACACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
** * * * *
83980741 TATCCGGTACATGTAGTAGCCTGTACTTAGTACTACTCACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACC-AAT
* * * * * *
83980791 CATCTGATACACGTAGTAGCCTGCACTTAGTACTACACACGTGATCAAAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGA-CCAA-T
* * *
83980842 TATCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
*
83980891 TATCCGGTACACATAGTAGCCTACACTTAGTACTACACAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACAC
83980931 ATGACCTCAC
Statistics
Matches: 157, Mismatches: 30, Indels: 6
0.81 0.16 0.03
Matches are distributed among these distances:
49 74 0.47
50 45 0.29
51 38 0.24
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGCGACCAAT
Found at i:83985082 original size:630 final size:627
Alignment explanation
Indices: 83983795--83985436 Score: 2756
Period size: 630 Copynumber: 2.6 Consensus size: 627
83983785 TAAGTTTGGT
* * ** *
83983795 AAGTTGTCCTCCTCTCTCCTAGGGTTTCCATAGAAATTTTGGGGAAGATGATATGAAATTAGATG
1 AAGTTTTCTTCCTCTCTCCTAGGGTTTCCATAGAAAAATTGGGGAAGATGATATGAAAATAGATG
* * * * * * *
83983860 AATATTTCTTTTTATTTAATT-TCCATCTTTTAATTTTAGTGATTTCCAATTTAGTCCCTTGCCA
66 ATTTTTTCTTTTTAATTAATTAT-CATCTATTAATTTTATTGATTTTCAATTTAGTCCC-TACCA
* *
83983924 TTTT-AAATTTTTCCATGGATGAGTCATTAAAATATCTACTAACTACACTTCAATGGTCTAATTA
129 TTTTCTAATTTTTCCATGGATGAGTCATTAAAATATCTACTAACTACTCTTCAATGGTCTAATTA
*
83983988 CCATATAAGGGCCTTAAGTTTTGAATTTCATAGCTATTTGATACCTATAGCTACTAGAACCCAAC
194 CCATATAAGGACCTTAAGTTTTGAATTTCATAGCTATTTGATACCTATAGCTACTAGAACCCAAC
* * * * *
83984053 TTTTTCATTTTATACAATTTAGTCCTTTACC-TAATTAACCAAACAATCGATAAAATTTTTATAT
259 TTTTGCATTTTATACAATTTAGTCCTTT-CCTTAATTAAACACACAATCG-TAAAATTTTCATAC
* *
83984117 CAAAATTTTCATGTGACCTTTCTATCAAGATGCCAACCATAAAATAAAAAAAA-T-TCTTTTTTT
322 CAAAATTTTCATGTGACCTTCCTATCAAGATGCCAACCATAAAATAAAAAAAATTATTTTTTTTT
*
83984180 TAACTCGGATTTGTGATCTCGAAACCACTGTTCCTACTTCACTGAAATTGGGCTGTTACAAATAA
387 TAACTCGGATTTGTGATCTAGAAACCACTGTTCCTACTTCACTGAAATTGGGCTGTTACAAATAA
83984245 CTGTTCATTTTCTACCATAAATTTCAAAATTTTAGCATATTCATCCATGACCCAAATTTCATACC
452 CTGTTCATTTTCTACCATAAATTTCAAAATTTTAGCATATTCATCCATGACCCAAATTTCATACC
83984310 TTGATAACTTTTCAAATAAATCCCCTAAATAGAAAGATTAGGCTATCCCGATTCAAAAAATATAG
517 TTGATAACTTTTCAAATAAATCCCCTAAATAGAAAGATTAGGCTATCCCGATTCAAAAAATATAG
83984375 AAATTACTAAAAACGGGACTTGATTTCATACCTTATTAAGCTTGAA
582 AAATTACTAAAAACGGGACTTGATTTCATACCTTATTAAGCTTGAA
*
83984421 AAGTTTTCTTCCTCTCTCCTAGGGTTTCCATAGAAAAATTGGGGAAAATGATATGAAAATAGATG
1 AAGTTTTCTTCCTCTCTCCTAGGGTTTCCATAGAAAAATTGGGGAAGATGATATGAAAATAGATG
* *
83984486 ATTTTTTCTTTTTAATTAATTATCATCTATTAATTTTATTGATTTTTAATTTATTCCCTACCATT
66 ATTTTTTCTTTTTAATTAATTATCATCTATTAATTTTATTGATTTTCAATTTAGTCCCTACCATT
*
83984551 TTCTAATTTTTCCATGGATGAGTCATTAAAATATCTACTAACTACTCTTCAATGGTTTAATTACC
131 TTCTAATTTTTCCATGGATGAGTCATTAAAATATCTACTAACTACTCTTCAATGGTCTAATTACC
*
83984616 ATATAAGGACCCTAAGTTTTGAA-TTCTATAGCTATTTGATACCTATAGCTACTAGAACCCAACT
196 ATATAAGGACCTTAAGTTTTGAATTTC-ATAGCTATTTGATACCTATAGCTACTAGAACCCAACT
*
83984680 TTTGCATTTTATACAATTTAGTCCTTTCCTTAATTAAACACACAATCAGTAAAATTTTCGTACCA
260 TTTGCATTTTATACAATTTAGTCCTTTCCTTAATTAAACACACAATC-GTAAAATTTTCATACCA
*
83984745 AAATTTTCATGTGACATTCCTATCAAGATGCCAACCATAAAATAAAACAAAATTATTTTTGTTTT
324 AAATTTTCATGTGACCTTCCTATCAAGATGCCAACCATAAAATAAAA-AAAATTATTTTT-TTTT
83984810 TAACTCGGATTTGTGATCTAGAAACCACTGTTCCTACTTCACTGAAATTGGGCTGTTACAAATAA
387 TAACTCGGATTTGTGATCTAGAAACCACTGTTCCTACTTCACTGAAATTGGGCTGTTACAAATAA
83984875 CTGTTCATTTTCTACCATAAATTTCAAAATTTTAGCATATTCATCCATGACCCAAATTTCATACC
452 CTGTTCATTTTCTACCATAAATTTCAAAATTTTAGCATATTCATCCATGACCCAAATTTCATACC
83984940 TTGATAACTTTTCAAATAAATCCCCTAAATAGAAAGATTAGGCTATCCCGATTCAAAAAATATAG
517 TTGATAACTTTTCAAATAAATCCCCTAAATAGAAAGATTAGGCTATCCCGATTCAAAAAATATAG
83985005 AAATTACTAAAAACGGGACTTGATTTCATACCTTATTAAGCTTGAA
582 AAATTACTAAAAACGGGACTTGATTTCATACCTTATTAAGCTTGAA
* *
83985051 AAGTTTTCTTCCTCTCTCTTAGGGTTTCCATAGAAAAATTGGGGAAGATGATATGATAATAGATG
1 AAGTTTTCTTCCTCTCTCCTAGGGTTTCCATAGAAAAATTGGGGAAGATGATATGAAAATAGATG
* *
83985116 ATTTTTTCTTTTTAATTAATTATCATCTATTAATTTTATTTATTTTCAATTTAGTCCCTACCCTT
66 ATTTTTTCTTTTTAATTAATTATCATCTATTAATTTTATTGATTTTCAATTTAGTCCCTACCATT
* *
83985181 TTCTAATTTTTCCATGGATGAGTCATTAAAATATCTACTAACTACTCTTCAATAGTCTAACTACC
131 TTCTAATTTTTCCATGGATGAGTCATTAAAATATCTACTAACTACTCTTCAATGGTCTAATTACC
* *
83985246 ATAAAAGGACCTTAAGTTTTAAATTTCATAGCTATTTGATACCTATAGCTACTAGAACCCAACTT
196 ATATAAGGACCTTAAGTTTTGAATTTCATAGCTATTTGATACCTATAGCTACTAGAACCCAACTT
* * * *
83985311 ATGCATTTTATACAATTTAGTCTTTTCCTTAATTAAATACACAATCGGTAAAAATTTCATACCAA
261 TTGCATTTTATACAATTTAGTCCTTTCCTTAATTAAACACACAATC-GTAAAATTTTCATACCAA
* *
83985376 AATTTTCATGTGACCTTCCTATCATGATGCCAACCATAAAATAAAATAAAATAATTTTTTT
325 AATTTTCATGTGACCTTCCTATCAAGATGCCAACCATAAAATAAAA-AAAATTATTTTTTT
83985437 ATTTTTGGTT
Statistics
Matches: 953, Mismatches: 53, Indels: 17
0.93 0.05 0.02
Matches are distributed among these distances:
625 13 0.01
626 323 0.34
627 6 0.01
628 1 0.00
629 6 0.01
630 601 0.63
631 3 0.00
ACGTcount: A:0.34, C:0.18, G:0.10, T:0.38
Consensus pattern (627 bp):
AAGTTTTCTTCCTCTCTCCTAGGGTTTCCATAGAAAAATTGGGGAAGATGATATGAAAATAGATG
ATTTTTTCTTTTTAATTAATTATCATCTATTAATTTTATTGATTTTCAATTTAGTCCCTACCATT
TTCTAATTTTTCCATGGATGAGTCATTAAAATATCTACTAACTACTCTTCAATGGTCTAATTACC
ATATAAGGACCTTAAGTTTTGAATTTCATAGCTATTTGATACCTATAGCTACTAGAACCCAACTT
TTGCATTTTATACAATTTAGTCCTTTCCTTAATTAAACACACAATCGTAAAATTTTCATACCAAA
ATTTTCATGTGACCTTCCTATCAAGATGCCAACCATAAAATAAAAAAAATTATTTTTTTTTTAAC
TCGGATTTGTGATCTAGAAACCACTGTTCCTACTTCACTGAAATTGGGCTGTTACAAATAACTGT
TCATTTTCTACCATAAATTTCAAAATTTTAGCATATTCATCCATGACCCAAATTTCATACCTTGA
TAACTTTTCAAATAAATCCCCTAAATAGAAAGATTAGGCTATCCCGATTCAAAAAATATAGAAAT
TACTAAAAACGGGACTTGATTTCATACCTTATTAAGCTTGAA
Found at i:83993087 original size:12 final size:12
Alignment explanation
Indices: 83993070--83993095 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
83993060 GTCCACATTG
83993070 GCATTTGTCTCA
1 GCATTTGTCTCA
83993082 GCATTTGTCTCA
1 GCATTTGTCTCA
83993094 GC
1 GC
83993096 CATGTGTGAC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.15, C:0.27, G:0.19, T:0.38
Consensus pattern (12 bp):
GCATTTGTCTCA
Found at i:83999322 original size:166 final size:162
Alignment explanation
Indices: 83999048--83999377 Score: 552
Period size: 166 Copynumber: 2.0 Consensus size: 162
83999038 TGCTGTGATA
* *
83999048 TTTTTGGTTAAAGTGCATGCAGCACATGAAGCTGCTGTAATATCTTTGGATGAAGTGCATGCAGC
1 TTTTTGGTTAAAGAGCATGCAGCACATGAAGCTGCTGTAATATCTTCGGATGAAGTGCATGCAGC
83999113 TTGTAAACATGACTGTTTAGCTGTAATATCTCCGGATGAAGTAAAGGGCTTATTAAACTACAAAA
66 TTGTAAACATGACTGTTTAGCTGTAATATCTCCGGATGAAGTAAAGGGC---TT-AACTACAAAA
*
83999178 ATAGGTTAATGGTTTGTTTAAACACAATATAATGAG
127 ATAGGGTAATGGTTTGTTTAAACACAATATAATGAG
* * *
83999214 TTTTTGGTTAAAGAGCATGGAGCACATTAAGCTGCTGTAATATCTTCGGATGAAGTGTATGCAGC
1 TTTTTGGTTAAAGAGCATGCAGCACATGAAGCTGCTGTAATATCTTCGGATGAAGTGCATGCAGC
*
83999279 TTGTAAACATGGCTGTTTAGCTGTAATATCTCCGGATGAAGTAAAGGGCTTAACTACAAAAATAG
66 TTGTAAACATGACTGTTTAGCTGTAATATCTCCGGATGAAGTAAAGGGCTTAACTACAAAAATAG
*
83999344 GGTAATGGTTTGTTTAAACACAATATAGTGAG
131 GGTAATGGTTTGTTTAAACACAATATAATGAG
83999376 TT
1 TT
83999378 GAAAGAGAAT
Statistics
Matches: 156, Mismatches: 8, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
162 46 0.29
163 2 0.01
166 108 0.69
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (162 bp):
TTTTTGGTTAAAGAGCATGCAGCACATGAAGCTGCTGTAATATCTTCGGATGAAGTGCATGCAGC
TTGTAAACATGACTGTTTAGCTGTAATATCTCCGGATGAAGTAAAGGGCTTAACTACAAAAATAG
GGTAATGGTTTGTTTAAACACAATATAATGAG
Found at i:84010058 original size:17 final size:17
Alignment explanation
Indices: 84010036--84010071 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 17
84010026 CAGAAATATC
84010036 TCTTTTCTCT-CCGTTCT
1 TCTTTTCTCTACC-TTCT
84010053 TCTTTTCTCTACCTTCT
1 TCTTTTCTCTACCTTCT
84010070 TC
1 TC
84010072 CTGTCTCGGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 16 0.89
18 2 0.11
ACGTcount: A:0.03, C:0.36, G:0.03, T:0.58
Consensus pattern (17 bp):
TCTTTTCTCTACCTTCT
Found at i:84012413 original size:93 final size:93
Alignment explanation
Indices: 84012254--84012424 Score: 243
Period size: 93 Copynumber: 1.8 Consensus size: 93
84012244 GGATGGTTGA
* * * *
84012254 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
84012319 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *** *
84012347 GCATCCGAACTCGTTGATTTGAGTCCAAGTTCATTTATGGATTTGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
*
84012412 TGAGTCTGAGTTC
66 TGAGTCCGAGTTC
84012425 ACTTAGGGGC
Statistics
Matches: 67, Mismatches: 11, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
93 67 1.00
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCAAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:84019635 original size:47 final size:47
Alignment explanation
Indices: 84019584--84019730 Score: 240
Period size: 47 Copynumber: 3.1 Consensus size: 47
84019574 TTAGGATTTT
84019584 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
*
84019631 ATGTGATGAATGTGAGCATGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
* * * * *
84019678 ATGTGATGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
84019725 ATGTGA
1 ATGTGA
84019731 AATATGTATG
Statistics
Matches: 93, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
47 93 1.00
ACGTcount: A:0.33, C:0.12, G:0.29, T:0.27
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATGTGTGATAAGGCCGAATGGCCA
Found at i:84019637 original size:22 final size:22
Alignment explanation
Indices: 84019610--84019684 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
84019600 CATGCATATG
84019610 TGTGATAAGGCCGAATGGCCAA
1 TGTGATAAGGCCGAATGGCCAA
* *
84019632 TGTGATGAATGTG-AGCAT-G-CATA
1 TGTGAT-AA-G-GCCGAATGGCCA-A
84019655 TGTGTGATAAGGCCGAATGGCCAA
1 --TGTGATAAGGCCGAATGGCCAA
84019679 TGTGAT
1 TGTGAT
84019685 GAATATGAAC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 15 0.38
23 8 0.20
24 8 0.20
25 9 0.22
ACGTcount: A:0.29, C:0.13, G:0.32, T:0.25
Consensus pattern (22 bp):
TGTGATAAGGCCGAATGGCCAA
Found at i:84020045 original size:37 final size:37
Alignment explanation
Indices: 84019937--84020045 Score: 191
Period size: 37 Copynumber: 2.9 Consensus size: 37
84019927 GGAAATATAT
*
84019937 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
84019974 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* *
84020011 TCCGGGTAAGACCCGATAACTTCGTGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
84020046 CGTCTGAGCT
Statistics
Matches: 69, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 69 1.00
ACGTcount: A:0.23, C:0.19, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:84021599 original size:20 final size:20
Alignment explanation
Indices: 84021563--84021601 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
84021553 CAGAAATCTC
*
84021563 TCTTTTCTCTCTGTTCTTCT
1 TCTTTTCTCTCTCTTCTTCT
84021583 TCTTTTCTCTAC-CTTCTTC
1 TCTTTTCTCT-CTCTTCTTC
84021602 CTATCTCGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 16 0.94
21 1 0.06
ACGTcount: A:0.03, C:0.33, G:0.03, T:0.62
Consensus pattern (20 bp):
TCTTTTCTCTCTCTTCTTCT
Found at i:84023680 original size:34 final size:34
Alignment explanation
Indices: 84023605--84023709 Score: 101
Period size: 34 Copynumber: 3.1 Consensus size: 34
84023595 TTTGGAATTA
* *
84023605 CCTCTTCCCTCCCCCCTCTCTCTCTCCCTT-TCT-C
1 CCTCTCCCCT-CCCCCTCTCTC-CTCTCTTCTCTCC
* *
84023639 CCACT-CCCTCTCCCTCTCTCACTCTCTTCTCTCC
1 CCTCTCCCCTCCCCCTCTCTC-CTCTCTTCTCTCC
*
84023673 CCTCTCCCCTCCCCCTCCTGTCCTCTC-TCTCTCC
1 CCTCTCCCCTCCCCCT-CTCTCCTCTCTTCTCTCC
84023707 CCT
1 CCT
84023710 ATTTCTAAAA
Statistics
Matches: 60, Mismatches: 7, Indels: 8
0.80 0.09 0.11
Matches are distributed among these distances:
32 16 0.27
33 7 0.12
34 19 0.32
35 14 0.23
36 4 0.07
ACGTcount: A:0.02, C:0.62, G:0.01, T:0.35
Consensus pattern (34 bp):
CCTCTCCCCTCCCCCTCTCTCCTCTCTTCTCTCC
Found at i:84027379 original size:47 final size:46
Alignment explanation
Indices: 84027315--84027477 Score: 179
Period size: 47 Copynumber: 3.5 Consensus size: 46
84027305 TGGATGCGAA
*
84027315 CATCCGAACTCGTTGAGTTGAGTCCTAGTTCGTGAGATTTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGA-TTAACTAGG
* * * * * *
84027362 CATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTAGGA-T-GCGA-A
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA-GATTAACTAGG
* *
84027407 CATCTGAACTCATTGAGTTGAGTCCGAGTTCGTGAGATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGAT-TAACTAGG
*
84027454 CATCCGAGCTCGTTGAGTTGAGTC
1 CATCCGAACTCGTTGAGTTGAGTC
84027478 TTAGTTCACT
Statistics
Matches: 94, Mismatches: 16, Indels: 12
0.77 0.13 0.10
Matches are distributed among these distances:
43 2 0.02
44 2 0.02
45 31 0.33
46 4 0.04
47 51 0.54
48 2 0.02
49 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCGTGAGATTAACTAGG
Found at i:84027437 original size:92 final size:93
Alignment explanation
Indices: 84027267--84027531 Score: 388
Period size: 92 Copynumber: 2.9 Consensus size: 93
84027257 CAGATATTTG
*
84027267 GGCATCCGAACTCGTTGAGTTCAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
* *
84027332 TTGAGTCCTAGTTCGTGAGATTTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* * *
84027360 GGCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTA-GGATGCGAACATCTGAACTCATTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
84027424 TTGAGTCCGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAGATGTAACTA
* ** * *** *
84027452 GGCATCCGAGCTCGTTGAGTTGAGTCTTAGTTCACTTATAGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
*
84027517 TTGAATCCGAGTTCG
66 TTGAGTCCGAGTTCG
84027532 CTTATGGGCA
Statistics
Matches: 153, Mismatches: 18, Indels: 2
0.88 0.10 0.01
Matches are distributed among these distances:
92 84 0.55
93 69 0.45
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAGATGTAACTA
Found at i:84030159 original size:30 final size:29
Alignment explanation
Indices: 84030125--84030181 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 29
84030115 ATAGTATCGT
84030125 ATCTTGGATTTCTTTATTCTGGGTTTCTCA
1 ATCTTGGATTTCTTTATTC-GGGTTTCTCA
*
84030155 ATCTTGGATTTCTTTATTCGGTTTTCT
1 ATCTTGGATTTCTTTATTCGGGTTTCT
84030182 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
29 7 0.27
30 19 0.73
ACGTcount: A:0.12, C:0.16, G:0.16, T:0.56
Consensus pattern (29 bp):
ATCTTGGATTTCTTTATTCGGGTTTCTCA
Found at i:84032972 original size:46 final size:46
Alignment explanation
Indices: 84032910--84033180 Score: 210
Period size: 46 Copynumber: 5.8 Consensus size: 46
84032900 GATATTTGGG
* *
84032910 CATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * *
84032956 CATCCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGATATGTA-ACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-A
* *
84033003 CATCCGAACTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
* * * * * * * *
84033049 CGTCTGAACTCGTTCAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CGA-A
* *
84033096 CATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
*** * * *
84033142 TGCCCGAGCTCGTTGAGTTGAATCCGAGTTCGCTTATGG
1 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
84033181 GCGGGTTACA
Statistics
Matches: 171, Mismatches: 42, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
43 4 0.02
45 3 0.02
46 95 0.56
47 62 0.36
48 3 0.02
50 4 0.02
ACGTcount: A:0.23, C:0.19, G:0.27, T:0.31
Consensus pattern (46 bp):
CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA
Found at i:84033021 original size:47 final size:47
Alignment explanation
Indices: 84032956--84033126 Score: 170
Period size: 47 Copynumber: 3.7 Consensus size: 47
84032946 TGGATGCGAA
84032956 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGATATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGATATGTAACTAGG
* * * * * *
84033003 CATCCGAACTTGTTGAGTTGAGT-TCGAGTTCACT--TATGGATGCGA-A
1 CATCCGAACTCGTTGAGTTGAGTCT-GAGTTC-GTGATATGTA-ACTAGG
* * * *
84033049 CGTCTGAACTCGTTCAGTTGAGTCTGAGTTCGTGAGATGTAACTAGG
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGATATGTAACTAGG
* * *
84033096 CATCCGAGCTCATTGAGTTGAGTCCGAGTTC
1 CATCCGAACTCGTTGAGTTGAGTCTGAGTTC
84033127 ACTTATGGAT
Statistics
Matches: 95, Mismatches: 22, Indels: 14
0.73 0.17 0.11
Matches are distributed among these distances:
45 1 0.01
46 33 0.35
47 60 0.63
48 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (47 bp):
CATCCGAACTCGTTGAGTTGAGTCTGAGTTCGTGATATGTAACTAGG
Found at i:84033068 original size:93 final size:93
Alignment explanation
Indices: 84032908--84033173 Score: 406
Period size: 93 Copynumber: 2.9 Consensus size: 93
84032898 TAGATATTTG
* *
84032908 GGCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACATCCGAACTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
*
84032973 TTGAGTCTGAGTTCGTGATATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
** * * *
84033001 GGCATCCGAACTTGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTCAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
84033066 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCTGAGTTCGTGAGATGTAACTA
* * * *
84033094 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAG
1 GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
* *
84033159 TTGAATCCGAGTTCG
66 TTGAGTCTGAGTTCG
84033174 CTTATGGGCG
Statistics
Matches: 154, Mismatches: 19, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 154 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (93 bp):
GGCATCCGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAG
TTGAGTCTGAGTTCGTGAGATGTAACTA
Found at i:84039481 original size:19 final size:20
Alignment explanation
Indices: 84039439--84039486 Score: 55
Period size: 20 Copynumber: 2.4 Consensus size: 20
84039429 ACACGGCTAA
*
84039439 GGCCATTTTTGGGCTATGTG
1 GGCCATTTATGGGCTATGTG
84039459 GGCCATATTATGGGCT-T-TG
1 GGCCAT-TTATGGGCTATGTG
84039478 GGCCCATTT
1 GG-CCATTT
84039487 TCACTGATTG
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 6 0.24
20 11 0.44
21 8 0.32
ACGTcount: A:0.12, C:0.19, G:0.31, T:0.38
Consensus pattern (20 bp):
GGCCATTTATGGGCTATGTG
Found at i:84064653 original size:18 final size:18
Alignment explanation
Indices: 84064618--84064653 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
84064608 TCATACCTTT
* *
84064618 TATAATTTTTTATGTAAA
1 TATAATTTTTAATCTAAA
84064636 TATAATTTTTAATCTAAA
1 TATAATTTTTAATCTAAA
84064654 AATTTCATCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.03, T:0.53
Consensus pattern (18 bp):
TATAATTTTTAATCTAAA
Found at i:84066486 original size:20 final size:20
Alignment explanation
Indices: 84066463--84066506 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
84066453 CCATACGCGT
*
84066463 GTGTGGCTTGGGACACGCTC
1 GTGTGGCTTGGGACACGCCC
*
84066483 GTGTGGCTTGGGACGCGCCC
1 GTGTGGCTTGGGACACGCCC
84066503 GTGT
1 GTGT
84066507 TCCTTGCCCA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.07, C:0.25, G:0.43, T:0.25
Consensus pattern (20 bp):
GTGTGGCTTGGGACACGCCC
Found at i:84066512 original size:20 final size:20
Alignment explanation
Indices: 84066463--84066512 Score: 55
Period size: 20 Copynumber: 2.5 Consensus size: 20
84066453 CCATACGCGT
* *
84066463 GTGTGGCTTGGGACACGCTC
1 GTGTGCCTTGGGACACGCCC
* *
84066483 GTGTGGCTTGGGACGCGCCC
1 GTGTGCCTTGGGACACGCCC
*
84066503 GTGTTCCTTG
1 GTGTGCCTTG
84066513 CCCATGTAAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.06, C:0.26, G:0.40, T:0.28
Consensus pattern (20 bp):
GTGTGCCTTGGGACACGCCC
Found at i:84071742 original size:50 final size:50
Alignment explanation
Indices: 84071661--84071893 Score: 224
Period size: 50 Copynumber: 4.6 Consensus size: 50
84071651 CTGGTACCCA
*
84071661 TAGTAGCCTGCACTTAGTACTACACATGTGACCTATAAATTTGGAACATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATAAATTTGGAACATG
* * *
84071711 TAGTAGCCTGCACTTAGTACTACGCACGTGA-CT-TAACCATCT-GATACACG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATAA--ATTTGGA-ACATG
** * ** **
84071761 TAGTAGCCTGCACTTAGTACTACACACGTGA--TCGAAGTTAACGAGTATG
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTATAAATT-TGGAACATG
* * * * **
84071810 CATAGTAGCCTGTACTTAGTACTACACATGCGACCTATCAATTTGTTACATG
1 --TAGTAGCCTGCACTTAGTACTACACACGTGACCTATAAATTTGGAACATG
84071862 TAGTAGCCTGCACTTAGTACTACACACGTGAC
1 TAGTAGCCTGCACTTAGTACTACACACGTGAC
84071894 TCACAATGGA
Statistics
Matches: 145, Mismatches: 28, Indels: 20
0.75 0.15 0.10
Matches are distributed among these distances:
48 4 0.03
49 7 0.05
50 99 0.68
51 28 0.19
52 3 0.02
53 4 0.03
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTATAAATTTGGAACATG
Found at i:84071865 original size:101 final size:101
Alignment explanation
Indices: 84071711--84071892 Score: 274
Period size: 101 Copynumber: 1.8 Consensus size: 101
84071701 TTGGAACATG
* * * *
84071711 TAGTAGCCTGCACTTAGTACTACGCACGTGACTTAACCATCTGATACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
84071776 AGTACTACACACGTGATCGAAGTTAACGAGTATGCA
66 AGTACTACACACGTGATCGAAGTTAACGAGTATGCA
* * * * * *
84071812 TAGTAGCCTGTACTTAGTACTACACATGCGACCTATCAATTTGTTACATGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
84071877 AGTACTACACACGTGA
66 AGTACTACACACGTGA
84071893 CTCACAATGG
Statistics
Matches: 71, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
101 71 1.00
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACACGCGACCTAACAATCTGATACACGTAGTAGCCTGCACTT
AGTACTACACACGTGATCGAAGTTAACGAGTATGCA
Found at i:84075790 original size:26 final size:24
Alignment explanation
Indices: 84075782--84075922 Score: 82
Period size: 23 Copynumber: 6.0 Consensus size: 24
84075772 CTTATTGATA
84075782 TATCAGCTCATAAGAGCTTACTGT
1 TATCAGCTCATAAGAGCTTACTGT
* **
84075806 TATCAGCTCAT-TGAAGCTTACCAT
1 TATCAGCTCATAAG-AGCTTACTGT
*
84075830 T-TCAGCTCATATA-AGCTTATTG-
1 TATCAGCTCATA-AGAGCTTACTGT
* * *
84075852 T-TCAACTCGAT-AGAGATTACCGT
1 TATCAGCTC-ATAAGAGCTTACTGT
*
84075875 T-TCTGCTCA-ATAGAGCTTACTGGT
1 TATCAGCTCATA-AGAGCTTACT-GT
* *
84075899 CATCAGCTCAGAAGGAGCTTACTG
1 TATCAGCTCATAA-GAGCTTACTG
84075923 ATTAGGACTC
Statistics
Matches: 88, Mismatches: 17, Indels: 23
0.69 0.13 0.18
Matches are distributed among these distances:
21 1 0.01
22 14 0.16
23 32 0.36
24 22 0.25
25 9 0.10
26 10 0.11
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.33
Consensus pattern (24 bp):
TATCAGCTCATAAGAGCTTACTGT
Found at i:84082320 original size:57 final size:58
Alignment explanation
Indices: 84082188--84082337 Score: 162
Period size: 57 Copynumber: 2.6 Consensus size: 58
84082178 TACTGACCTT
* * * *
84082188 GTTATAGAAAGGATTTAGCTTGAACGGGTAATCCGAATATAATACCTCTCGAGTATAC
1 GTTATATAAAGGATTTAGCTTGGACTGGTAATCCTAATATAATACCTCTCGAGTATAC
* * * * * *
84082246 GTTATGAT-TAGGGTTTAGCCTGGACTGGTAATCCTAAT-TGA-ACTCTTTTGAGTATAC
1 GTTAT-ATAAAGGATTTAGCTTGGACTGGTAATCCTAATATAATAC-CTCTCGAGTATAC
*
84082303 GTTATATAAAGGATTTAGCTTGGACTAGTAATCCT
1 GTTATATAAAGGATTTAGCTTGGACTGGTAATCCT
84082338 GTTATACGAT
Statistics
Matches: 75, Mismatches: 14, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
56 4 0.05
57 41 0.55
58 29 0.39
59 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.21, T:0.35
Consensus pattern (58 bp):
GTTATATAAAGGATTTAGCTTGGACTGGTAATCCTAATATAATACCTCTCGAGTATAC
Found at i:84083986 original size:36 final size:36
Alignment explanation
Indices: 84083939--84084010 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
84083929 TTTTGGATGG
* *
84083939 TACTTTCTCCCCATTACTGTTTCTGTCGACTGTTTT
1 TACTTTCTCCCCATTACTCTTTCTATCGACTGTTTT
84083975 TACTTTCTCCCCATTACTCTTTCTATCGACTGTTTT
1 TACTTTCTCCCCATTACTCTTTCTATCGACTGTTTT
84084011 CTCTTCTGGG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.12, C:0.29, G:0.08, T:0.50
Consensus pattern (36 bp):
TACTTTCTCCCCATTACTCTTTCTATCGACTGTTTT
Found at i:84089273 original size:16 final size:16
Alignment explanation
Indices: 84089252--84089299 Score: 51
Period size: 16 Copynumber: 3.0 Consensus size: 16
84089242 TGATGTAATT
84089252 GTGTTAACGCCTTTCG
1 GTGTTAACGCCTTTCG
** *
84089268 GTGTTAACGTTTTTCA
1 GTGTTAACGCCTTTCG
* *
84089284 ATGATAACGCCTTTCG
1 GTGTTAACGCCTTTCG
84089300 ATCTTTACGC
Statistics
Matches: 24, Mismatches: 8, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
16 24 1.00
ACGTcount: A:0.19, C:0.21, G:0.21, T:0.40
Consensus pattern (16 bp):
GTGTTAACGCCTTTCG
Found at i:84094715 original size:31 final size:31
Alignment explanation
Indices: 84094680--84094746 Score: 91
Period size: 31 Copynumber: 2.2 Consensus size: 31
84094670 AACAACCTAG
*
84094680 TGACTTAAAT-AAAGATATTTGAATAATTCAA
1 TGACTTAAATGAAA-ATATTTAAATAATTCAA
*
84094711 TGACTTAAATGAAAATTTTTAAATAATTCAA
1 TGACTTAAATGAAAATATTTAAATAATTCAA
*
84094742 CGACT
1 TGACT
84094747 ATTTTGTAAC
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
31 29 0.91
32 3 0.09
ACGTcount: A:0.46, C:0.09, G:0.09, T:0.36
Consensus pattern (31 bp):
TGACTTAAATGAAAATATTTAAATAATTCAA
Found at i:84095030 original size:30 final size:32
Alignment explanation
Indices: 84094988--84095048 Score: 99
Period size: 31 Copynumber: 2.0 Consensus size: 32
84094978 ACTCAAAATG
84094988 GATGGAAAAATTT-AACCTACTGCTAAATATA
1 GATGGAAAAATTTCAACCTACTGCTAAATATA
*
84095019 GATGG-AAAATTTCAACCTATTGCTAAATAT
1 GATGGAAAAATTTCAACCTACTGCTAAATAT
84095049 CTAATGTGGC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 7 0.25
31 21 0.75
ACGTcount: A:0.43, C:0.13, G:0.13, T:0.31
Consensus pattern (32 bp):
GATGGAAAAATTTCAACCTACTGCTAAATATA
Found at i:84103010 original size:29 final size:29
Alignment explanation
Indices: 84102975--84103048 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
84102965 GTTGTGAGAT
* *
84102975 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
* *
84103004 TGGCACTAAGTGTACGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
84103033 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
84103049 TGGTTGATTA
Statistics
Matches: 39, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
28 5 0.13
29 34 0.87
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:84103416 original size:40 final size:40
Alignment explanation
Indices: 84103359--84103541 Score: 208
Period size: 40 Copynumber: 4.6 Consensus size: 40
84103349 TTGAATGATG
* * *
84103359 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* *
84103399 TCCGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
** *
84103439 TTTGGACTAAGTTCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* * * *
84103479 TCCGGGCTAGGTCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
84103519 TCCGGGCTAGGTCCCGAAGAGCA
1 TCCGGACTAAGTCCCGAAGAGCA
84103542 ATCATGCTGG
Statistics
Matches: 126, Mismatches: 15, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
40 112 0.89
41 7 0.06
42 7 0.06
ACGTcount: A:0.23, C:0.22, G:0.29, T:0.26
Consensus pattern (40 bp):
TCCGGACTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:84104766 original size:47 final size:47
Alignment explanation
Indices: 84104701--84105174 Score: 786
Period size: 47 Copynumber: 9.9 Consensus size: 47
84104691 ACAGTCACAT
*
84104701 ATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * * * * *
84104748 ATATATACACTTTCACATTCATCACGTTGGCCACTCGGCCCTGTCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84104795 ATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84104844 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84104891 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84104938 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84104987 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 --ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84105036 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
84105083 ATATATACACTTTCACATTCATCACATCGGCCATAAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
84105130 ATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 --ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
84105175 CTATCATTTC
Statistics
Matches: 402, Mismatches: 19, Indels: 10
0.93 0.04 0.02
Matches are distributed among these distances:
47 225 0.56
49 177 0.44
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:84104858 original size:96 final size:96
Alignment explanation
Indices: 84104695--84105174 Score: 806
Period size: 96 Copynumber: 5.0 Consensus size: 96
84104685 NNNNNNACAG
*
84104695 TCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
* * * * * *
84104760 TCACATTCATCACGTTGGCCACTCGGCCCTG
66 TCACATTCATCACATCGGCCATTAGGCCTTA
*
84104791 TCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
84104856 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
*
84104887 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACAC
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
84104950 TTTCACATTCATCACATCGGCCATTAGGCCTTA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTA
84104983 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
84105048 TCACATTCATCACATCGGCCATTAGGCCTTA
66 TCACATTCATCACATCGGCCATTAGGCCTTA
*
84105079 TCAC--ATATATACACTTTCACATTCATCACATCGGCCATAAGGCCTTATCACATATATATACAC
1 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACAC
84105142 TTTCACATTCATCACATCGGCCATTAGGCCTTA
64 TTTCACATTCATCACATCGGCCATTAGGCCTTA
84105175 CTATCATTTC
Statistics
Matches: 368, Mismatches: 10, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
94 91 0.25
96 231 0.63
98 46 0.12
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (96 bp):
TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTTA
Found at i:84104957 original size:143 final size:144
Alignment explanation
Indices: 84104695--84105174 Score: 831
Period size: 143 Copynumber: 3.3 Consensus size: 144
84104685 NNNNNNACAG
*
84104695 TCACATATATATACACTTCCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
* * * * * *
84104760 TCACATTCATCACGTTGGCCACTCGGCCCTGTCACATATATATACACTTCCACATTCATCACATC
65 TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATC
84104825 GGCCATTAGGCCTTA
130 GGCCATTAGGCCTTA
84104840 TCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
1 TCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
84104904 CACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCG
66 CACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCG
84104969 GCCATTAGGCCTTA
131 GCCATTAGGCCTTA
84104983 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
84105048 TCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATC
65 TCACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATC
*
84105111 GGCCATAAGGCCTTA
130 GGCCATTAGGCCTTA
84105126 TCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 TCACA-ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
84105175 CTATCATTTC
Statistics
Matches: 324, Mismatches: 9, Indels: 6
0.96 0.03 0.02
Matches are distributed among these distances:
143 227 0.70
145 97 0.30
ACGTcount: A:0.30, C:0.30, G:0.09, T:0.31
Consensus pattern (144 bp):
TCACAATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTT
CACATTCATCACATCGGCCATTAGGCCCTATCACATATATATACACTTTCACATTCATCACATCG
GCCATTAGGCCTTA
Found at i:84107140 original size:12 final size:11
Alignment explanation
Indices: 84107113--84107143 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
84107103 GATGAACACC
84107113 CTTTCTTTTTT
1 CTTTCTTTTTT
84107124 CTTTCTTTTTT
1 CTTTCTTTTTT
84107135 CTTTTCTTT
1 C-TTTCTTT
84107144 GTCTAGTTAC
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 12 0.63
12 7 0.37
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (11 bp):
CTTTCTTTTTT
Found at i:84109705 original size:46 final size:46
Alignment explanation
Indices: 84109610--84109820 Score: 200
Period size: 46 Copynumber: 4.6 Consensus size: 46
84109600 AGGCTAACAC
* * * * *
84109610 CATGTCCCGGACATGGTCTTACACT-G-ACACATCTCGTAGCTGATA
1 CATGTCCCAGACAT-GTCTTACACTGGCTCTCATCTCGTAGCCGATG
84109655 CATGTCCCAGACATGTCTTACACTGGCT-TACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCT-CATCTCGTA-GCCGATG
* * * *
84109701 CATGTCCCAGACATGTCTTACACTAGCTCTCGTCTC-AATGTCGATG
1 CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTA-GCCGATG
* * *
84109747 CCATGTCCCAGACATGGTCTTACACTAGCTCTCATAAT-GTAGCTGATG
1 -CATGTCCCAGACAT-GTCTTACACTGGCTCTCAT-CTCGTAGCCGATG
*
84109795 CATGTCCCAAACATGTCTTACACTGG
1 CATGTCCCAGACATGTCTTACACTGG
84109821 AACACAAATA
Statistics
Matches: 140, Mismatches: 16, Indels: 19
0.80 0.09 0.11
Matches are distributed among these distances:
44 10 0.07
45 15 0.11
46 62 0.44
47 28 0.20
48 23 0.16
49 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTGGCTCTCATCTCGTAGCCGATG
Found at i:84111842 original size:43 final size:43
Alignment explanation
Indices: 84111776--84111902 Score: 136
Period size: 43 Copynumber: 3.0 Consensus size: 43
84111766 AGCTCGTACA
**
84111776 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATGTAATCAAATATCG
* * * *
84111819 ATGCCACTATCCCAGACAG-GGTCTTACACGAAATCATATA-C-
1 ATGCCAATATCCCAGAC-GTGGTCTTACATGTAATCAAATATCG
* *
84111860 ATGCCAATGTCCCAGACGTGGTCTTACATGATAA-CACATATCG
1 ATGCCAATATCCCAGACGTGGTCTTACATG-TAATCAAATATCG
84111903 GAATCCTATG
Statistics
Matches: 68, Mismatches: 11, Indels: 10
0.76 0.12 0.11
Matches are distributed among these distances:
40 1 0.01
41 30 0.44
42 4 0.06
43 32 0.47
44 1 0.01
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAATATCCCAGACGTGGTCTTACATGTAATCAAATATCG
Found at i:84111876 original size:41 final size:43
Alignment explanation
Indices: 84111776--84111887 Score: 140
Period size: 43 Copynumber: 2.7 Consensus size: 43
84111766 AGCTCGTACA
* * *
84111776 ATGCCAACGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
* * *
84111819 ATGCCACTATCCCAGACAG-GGTCTTACACGAAATCATATA-C-
1 ATGCCAATGTCCCAGAC-GTGGTCTTACACGAAATCAAATATCG
84111860 ATGCCAATGTCCCAGACGTGGTCTTACA
1 ATGCCAATGTCCCAGACGTGGTCTTACA
84111888 TGATAACACA
Statistics
Matches: 59, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
40 1 0.02
41 24 0.41
42 1 0.02
43 32 0.54
44 1 0.02
ACGTcount: A:0.30, C:0.28, G:0.18, T:0.24
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACGTGGTCTTACACGAAATCAAATATCG
Found at i:84117643 original size:18 final size:18
Alignment explanation
Indices: 84117620--84117655 Score: 72
Period size: 18 Copynumber: 2.0 Consensus size: 18
84117610 CCTTCGGGAC
84117620 TTAGCCCGGTTATAGTAA
1 TTAGCCCGGTTATAGTAA
84117638 TTAGCCCGGTTATAGTAA
1 TTAGCCCGGTTATAGTAA
84117656 CTCGCACAAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.28, C:0.17, G:0.22, T:0.33
Consensus pattern (18 bp):
TTAGCCCGGTTATAGTAA
Found at i:84117670 original size:58 final size:58
Alignment explanation
Indices: 84117580--84117695 Score: 223
Period size: 58 Copynumber: 2.0 Consensus size: 58
84117570 CCTTCGGGAC
84117580 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
1 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
*
84117638 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTGGCCCGGTTATAGTAA
1 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
84117696 CTCGCACAAA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
58 57 1.00
ACGTcount: A:0.23, C:0.24, G:0.23, T:0.29
Consensus pattern (58 bp):
TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAGCCCGGTTATAGTAA
Found at i:84117696 original size:40 final size:40
Alignment explanation
Indices: 84117638--84117769 Score: 203
Period size: 40 Copynumber: 3.3 Consensus size: 40
84117628 GTTATAGTAA
*
84117638 TTAGCCCGGTTATAGTAACTCGCACAATTGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
*
84117678 TTGGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
* * * *
84117718 TTAGCCCGGATATAGTAACTGGCAAAAATGCCTTTGGG-C
1 TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
84117757 TTAGCCCGGTTAT
1 TTAGCCCGGTTAT
84117770 CAATTCGAAT
Statistics
Matches: 84, Mismatches: 8, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 13 0.15
40 71 0.85
ACGTcount: A:0.23, C:0.25, G:0.24, T:0.27
Consensus pattern (40 bp):
TTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:84131516 original size:63 final size:63
Alignment explanation
Indices: 84131435--84131560 Score: 234
Period size: 63 Copynumber: 2.0 Consensus size: 63
84131425 GAAAGTAACA
*
84131435 AAACGATCATATGAACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGGGCCAGAACGG
1 AAACGATCATATGAACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGAGCCAGAACGG
*
84131498 AAACGATCATATGGACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGAGCCAGAACGG
1 AAACGATCATATGAACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGAGCCAGAACGG
84131561 TTTCTGGATT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
63 61 1.00
ACGTcount: A:0.35, C:0.16, G:0.27, T:0.22
Consensus pattern (63 bp):
AAACGATCATATGAACAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGAGCCAGAACGG
Found at i:84132100 original size:28 final size:28
Alignment explanation
Indices: 84132043--84132106 Score: 83
Period size: 28 Copynumber: 2.3 Consensus size: 28
84132033 TGGGAAGTAG
* *
84132043 TTGGGCCTGATGGACCATATGAATGTGA
1 TTGGGCCTGATGGACCATATGAACGAGA
* *
84132071 TTGGGCCTGATGGGCCATGTGAACGAGA
1 TTGGGCCTGATGGACCATATGAACGAGA
*
84132099 TTAGGCCT
1 TTGGGCCT
84132107 AAAGGGGCCA
Statistics
Matches: 31, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.22, C:0.17, G:0.34, T:0.27
Consensus pattern (28 bp):
TTGGGCCTGATGGACCATATGAACGAGA
Found at i:84132460 original size:27 final size:27
Alignment explanation
Indices: 84132422--84132760 Score: 336
Period size: 27 Copynumber: 12.7 Consensus size: 27
84132412 TAATAAAGAG
*
84132422 AAATTACTGAAATGCCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* * * *
84132449 AAATTATTGAAATACCC-CTAATTTTTG
1 AAATTACTGAAATACCCTC-GATTTGTA
*
84132476 AAATTACTGAAACACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
84132503 AAATTACCGAAATACCCTC-ATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
84132529 AAATTA-TCAAAATACCCTCGA-TTGTG
1 AAATTACT-GAAATACCCTCGATTTGTA
*
84132555 AAATTACTAAAATACCCTCGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
84132582 AAATTACTAAAATACCCT-AATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* ** * *
84132608 AAAGTACCAAAACACCCTCAATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
*
84132635 AAATTA-TCGAAATACCCTCAATTTGTA
1 AAATTACT-GAAATACCCTCGATTTGTA
*
84132662 AAATTACTGAAATACCCTTGATTTGTA
1 AAATTACTGAAATACCCTCGATTTGTA
* *
84132689 AAATTACTGAAACATTCCT-GATTTGTA
1 AAATTACTGAAATA-CCCTCGATTTGTA
* * *
84132716 AAATTA-TCGAAATATCCTTG-TAGTGTA
1 AAATTACT-GAAATACCCTCGAT-TTGTA
*
84132743 AAATTACCGAAATACCCT
1 AAATTACTGAAATACCCT
84132761 TATAGTGTAA
Statistics
Matches: 266, Mismatches: 32, Indels: 28
0.82 0.10 0.09
Matches are distributed among these distances:
26 75 0.28
27 186 0.70
28 5 0.02
ACGTcount: A:0.39, C:0.19, G:0.09, T:0.33
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGATTTGTA
Found at i:84132579 original size:53 final size:54
Alignment explanation
Indices: 84132489--84132694 Score: 267
Period size: 53 Copynumber: 3.9 Consensus size: 54
84132479 TTACTGAAAC
* *
84132489 ACCCTCGATTTGTAAAATTACCGAAATACCCTC-ATTTGTAAAATTATCAAAAT
1 ACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCAAAAT
* * *
84132542 ACCCTCGA-TTGTGAAATTACTAAAATACCCTCGATTTGTAAAATTA-CTAAAAT
1 ACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATC-AAAAT
* * * *
84132595 ACCCT-AATTTGTAAAAGTACCAAAACACCCTCAATTTGTAAAATTATCGAAAT
1 ACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCAAAAT
** *
84132648 ACCCTCAATTTGTAAAATTACTGAAATACCCTTGATTTGTAAAATTA
1 ACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTA
84132695 CTGAAACATT
Statistics
Matches: 132, Mismatches: 16, Indels: 9
0.84 0.10 0.06
Matches are distributed among these distances:
52 23 0.17
53 73 0.55
54 36 0.27
ACGTcount: A:0.40, C:0.19, G:0.08, T:0.32
Consensus pattern (54 bp):
ACCCTCAATTTGTAAAATTACCAAAATACCCTCGATTTGTAAAATTATCAAAAT
Found at i:84132770 original size:54 final size:53
Alignment explanation
Indices: 84132631--84132800 Score: 148
Period size: 54 Copynumber: 3.2 Consensus size: 53
84132621 ACCCTCAATT
* * *
84132631 TGTAAAATTATCGAAATACCCTCA-ATTTGTAAAATTACTGAAATACCCTTG-ATT
1 TGTAAAATTACCGAAATACCCTCATA-TTGTAAAATTAC-GAAATATCCTTGTA-G
* * * *
84132685 TGTAAAATTACTGAAACATTCCTGAT-TTGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTACCGAAATA-CCCTCATATTGTAAAATTA-CGAAATATCCTTGTAG
* * * * *
84132739 TGTAAAATTACCGAAATACCCTTATAGTGTAAAATGACCGACATATCCCTGTAG
1 TGTAAAATTACCGAAATACCCTCATATTGTAAAATTA-CGAAATATCCTTGTAG
*
84132793 GGTAAAAT
1 TGTAAAAT
84132801 AACTGTTTTG
Statistics
Matches: 94, Mismatches: 17, Indels: 10
0.78 0.14 0.08
Matches are distributed among these distances:
53 5 0.05
54 83 0.88
55 6 0.06
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (53 bp):
TGTAAAATTACCGAAATACCCTCATATTGTAAAATTACGAAATATCCTTGTAG
Found at i:84132797 original size:27 final size:27
Alignment explanation
Indices: 84132631--84132800 Score: 116
Period size: 27 Copynumber: 6.3 Consensus size: 27
84132621 ACCCTCAATT
* ** *
84132631 TGTAAAATTATCGAAATA-CCCTCAATT
1 TGTAAAATTACCGAAATATCCCTGTA-G
* *
84132658 TGTAAAATTACTGAAATA-CCCT-TGATT
1 TGTAAAATTACCGAAATATCCCTGT-A-G
* * * *
84132685 TGTAAAATTACTGAAACATTCCTG-ATT
1 TGTAAAATTACCGAAATATCCCTGTA-G
* *
84132712 TGTAAAATTATCGAAATATCCTTGTAG
1 TGTAAAATTACCGAAATATCCCTGTAG
*
84132739 TGTAAAATTACCGAAATA-CCCTTATAG
1 TGTAAAATTACCGAAATATCCC-TGTAG
* *
84132766 TGTAAAATGACCGACATATCCCTGTAG
1 TGTAAAATTACCGAAATATCCCTGTAG
*
84132793 GGTAAAAT
1 TGTAAAAT
84132801 AACTGTTTTG
Statistics
Matches: 119, Mismatches: 18, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
26 2 0.02
27 110 0.92
28 7 0.06
ACGTcount: A:0.38, C:0.16, G:0.13, T:0.33
Consensus pattern (27 bp):
TGTAAAATTACCGAAATATCCCTGTAG
Found at i:84139436 original size:46 final size:46
Alignment explanation
Indices: 84139287--84139415 Score: 258
Period size: 46 Copynumber: 2.8 Consensus size: 46
84139277 GGGCGTTCGT
84139287 ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGC
1 ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGC
84139333 ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGC
1 ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGC
84139379 ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
84139416 AATGCTCAGC
Statistics
Matches: 83, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 83 1.00
ACGTcount: A:0.31, C:0.26, G:0.19, T:0.23
Consensus pattern (46 bp):
ATCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGC
Found at i:84145308 original size:43 final size:43
Alignment explanation
Indices: 84145168--84145325 Score: 164
Period size: 43 Copynumber: 3.7 Consensus size: 43
84145158 AGCTCGTACA
* * *
84145168 ATGCCAACGTCCCAGACGTAGTCTTACATGT-AATCAAATATCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAAATCAAAT-TCG
* * *
84145211 ATGCC-ACTGTCCCAGATAG-GGTCTTACACG-AAATCAAATACG
1 ATGCCAAC-ATCCCAGA-CGTGGTCTTACACGTAAATCAAATTCG
84145253 ATGCCAACAT-CCAGACGTGGTCTTACACGTAAATCATAATTCG
1 ATGCCAACATCCCAGACGTGGTCTTACACGTAAATCA-AATTCG
* * *
84145296 ATGCCAACATCCAAGACATGGTTTTACACG
1 ATGCCAACATCCCAGACGTGGTCTTACACG
84145326 ATAACACATA
Statistics
Matches: 97, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
40 1 0.01
41 16 0.16
42 16 0.16
43 47 0.48
44 17 0.18
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (43 bp):
ATGCCAACATCCCAGACGTGGTCTTACACGTAAATCAAATTCG
Found at i:84145323 original size:85 final size:85
Alignment explanation
Indices: 84145168--84145326 Score: 198
Period size: 85 Copynumber: 1.9 Consensus size: 85
84145158 AGCTCGTACA
* * * * *
84145168 ATGCCAACGTCCCAGACGTAGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAGGGT
1 ATGCCAACATCCCAGACGTAGTCTTACACGTAATCAAATATCGATGCCACTATCCAAGACAGGGT
84145233 CTTACACGAAATCAAATACG
66 CTTACACGAAATCAAATACG
* *
84145253 ATGCCAACAT-CCAGACGTGGTCTTACACGTAAATCATAAT-TCGATGCCAAC-ATCCAAGACAT
1 ATGCCAACATCCCAGACGTAGTCTTACACGT-AATCA-AATATCGATGCC-ACTATCCAAGACAG
*
84145315 GGTTTTACACGA
63 GGTCTTACACGA
84145327 TAACACATAT
Statistics
Matches: 63, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
84 18 0.29
85 40 0.63
86 5 0.08
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (85 bp):
ATGCCAACATCCCAGACGTAGTCTTACACGTAATCAAATATCGATGCCACTATCCAAGACAGGGT
CTTACACGAAATCAAATACG
Found at i:84147455 original size:5 final size:5
Alignment explanation
Indices: 84147445--84147497 Score: 61
Period size: 5 Copynumber: 10.2 Consensus size: 5
84147435 AATAACCAGA
* * *
84147445 AAAAT AAAAT AAATT AAAAG AAAAGA ACAAAT AAAAT AAAAT AAAAT AAAAT
1 AAAAT AAAAT AAAAT AAAAT AAAA-T A-AAAT AAAAT AAAAT AAAAT AAAAT
84147497 A
1 A
84147498 GACTCAATGG
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
5 36 0.88
6 2 0.05
7 3 0.07
ACGTcount: A:0.77, C:0.02, G:0.04, T:0.17
Consensus pattern (5 bp):
AAAAT
Found at i:84147458 original size:27 final size:27
Alignment explanation
Indices: 84147427--84147495 Score: 86
Period size: 27 Copynumber: 2.5 Consensus size: 27
84147417 AAGTCTTAGG
*
84147427 AAAATACAAATAACCAGAA-AAATAAAAT
1 AAAATA-AAATAA-AAGAACAAATAAAAT
* *
84147455 AAATTAAAAGAAAAGAACAAATAAAAT
1 AAAATAAAATAAAAGAACAAATAAAAT
84147482 AAAATAAAATAAAA
1 AAAATAAAATAAAA
84147496 TAGACTCAAT
Statistics
Matches: 35, Mismatches: 5, Indels: 3
0.81 0.12 0.07
Matches are distributed among these distances:
26 4 0.11
27 26 0.74
28 5 0.14
ACGTcount: A:0.75, C:0.06, G:0.04, T:0.14
Consensus pattern (27 bp):
AAAATAAAATAAAAGAACAAATAAAAT
Found at i:84149099 original size:16 final size:16
Alignment explanation
Indices: 84149074--84149104 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
84149064 ACTAATTAAA
*
84149074 GAAATGAATAAATAAC
1 GAAATAAATAAATAAC
84149090 GAAATAAATAAATAA
1 GAAATAAATAAATAA
84149105 ATAAGTAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.68, C:0.03, G:0.10, T:0.19
Consensus pattern (16 bp):
GAAATAAATAAATAAC
Found at i:84149182 original size:3 final size:3
Alignment explanation
Indices: 84149121--84149170 Score: 82
Period size: 3 Copynumber: 16.7 Consensus size: 3
84149111 AAATAAGGAA
* *
84149121 AAT AAT AAT AAT GAG AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
84149169 AA
1 AA
84149171 GGTCAATAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
3 43 1.00
ACGTcount: A:0.66, C:0.00, G:0.04, T:0.30
Consensus pattern (3 bp):
AAT
Done.