Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 250 of 297
Found at i:85682026 original size:44 final size:44
Alignment explanation
Indices: 85681963--85682058 Score: 174
Period size: 44 Copynumber: 2.2 Consensus size: 44
85681953 TCGCAACCAG
*
85681963 GTGTGTAATCGTTCACCACTCAATTACTGTCAAAGCCAATAGAC
1 GTGTGTAACCGTTCACCACTCAATTACTGTCAAAGCCAATAGAC
*
85682007 GTGTGTAACCGTTCACCACTCAATTACTGTCAAAGCCAATAGAG
1 GTGTGTAACCGTTCACCACTCAATTACTGTCAAAGCCAATAGAC
85682051 GTGTGTAA
1 GTGTGTAA
85682059 TCACACGCCT
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
44 50 1.00
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (44 bp):
GTGTGTAACCGTTCACCACTCAATTACTGTCAAAGCCAATAGAC
Found at i:85682981 original size:32 final size:32
Alignment explanation
Indices: 85682943--85683024 Score: 110
Period size: 32 Copynumber: 2.6 Consensus size: 32
85682933 TATGGGTTTG
* * *
85682943 TAGGCCCAACTTATATTGGTTCTGATATGGGC
1 TAGGCCCAACTGATATTGATTCTGAGATGGGC
85682975 TAGGCCCAACTGATATTGATTCTGAGATGGGC
1 TAGGCCCAACTGATATTGATTCTGAGATGGGC
* * *
85683007 TAGCCCCAATTGAGATTG
1 TAGGCCCAACTGATATTG
85683025 TGAGGGGTTG
Statistics
Matches: 44, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 44 1.00
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (32 bp):
TAGGCCCAACTGATATTGATTCTGAGATGGGC
Found at i:85691342 original size:19 final size:19
Alignment explanation
Indices: 85691318--85691361 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
85691308 AGGAGAGAAT
85691318 GTAAAACCCTTGTTGACTA
1 GTAAAACCCTTGTTGACTA
*
85691337 GTAAAACTCTTGTTGACTA
1 GTAAAACCCTTGTTGACTA
85691356 GTAAAA
1 GTAAAA
85691362 GTTTATTTCA
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.36, C:0.16, G:0.16, T:0.32
Consensus pattern (19 bp):
GTAAAACCCTTGTTGACTA
Found at i:85691771 original size:6 final size:6
Alignment explanation
Indices: 85691760--85691790 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
85691750 ATTTTTTAAG
*
85691760 TCATTT TCATTT TCATTT TCATTT TCGTTT T
1 TCATTT TCATTT TCATTT TCATTT TCATTT T
85691791 GGTTTATTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.03, T:0.68
Consensus pattern (6 bp):
TCATTT
Found at i:85697892 original size:11 final size:11
Alignment explanation
Indices: 85697876--85697901 Score: 52
Period size: 11 Copynumber: 2.4 Consensus size: 11
85697866 ATGAGATATC
85697876 CGACAAAGTTT
1 CGACAAAGTTT
85697887 CGACAAAGTTT
1 CGACAAAGTTT
85697898 CGAC
1 CGAC
85697902 GTCTGAAAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 15 1.00
ACGTcount: A:0.35, C:0.23, G:0.19, T:0.23
Consensus pattern (11 bp):
CGACAAAGTTT
Found at i:85698079 original size:42 final size:43
Alignment explanation
Indices: 85697974--85698083 Score: 127
Period size: 44 Copynumber: 2.6 Consensus size: 43
85697964 CGATATGTGT
* *
85697974 TTTCGTGTAAGACCAC-GTTTGGGACATTGGCATCGACTTATGA
1 TTTCGTGTAAGACC-CTGTCTGGGACATCGGCATCGACTTATGA
* * *
85698017 TTTACATGTAAGACCATGTCTGGGACATCGGCATCTTA-TT-TGA
1 TTT-CGTGTAAGACCCTGTCTGGGACATCGGCATC-GACTTATGA
85698060 TTTCGTGTAAGACCCTGTCTGGGA
1 TTTCGTGTAAGACCCTGTCTGGGA
85698084 TAGTGGCACC
Statistics
Matches: 57, Mismatches: 7, Indels: 7
0.80 0.10 0.10
Matches are distributed among these distances:
42 19 0.33
43 9 0.16
44 28 0.49
45 1 0.02
ACGTcount: A:0.23, C:0.19, G:0.25, T:0.34
Consensus pattern (43 bp):
TTTCGTGTAAGACCCTGTCTGGGACATCGGCATCGACTTATGA
Found at i:85698116 original size:43 final size:42
Alignment explanation
Indices: 85698018--85698127 Score: 114
Period size: 42 Copynumber: 2.6 Consensus size: 42
85698008 GACTTATGAT
* * *
85698018 TTACATGTAAGACCATGTCTGGGACATCGGCATCTTATTTGA
1 TTACATGTAAGACCATGTCTGGGACATCGGCACCATATTCGA
* * * *
85698060 TTTCGTGTAAGACCCTGTCTGGGATAGT-GGCACCGATATTCGA
1 TTACATGTAAGACCATGTCTGGGACA-TCGGCACC-ATATTCGA
* *
85698103 TTACATGTAAGACCACGTCTTGGAC
1 TTACATGTAAGACCATGTCTGGGAC
85698128 GTTGGCATTG
Statistics
Matches: 53, Mismatches: 13, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
42 27 0.51
43 26 0.49
ACGTcount: A:0.25, C:0.21, G:0.24, T:0.31
Consensus pattern (42 bp):
TTACATGTAAGACCATGTCTGGGACATCGGCACCATATTCGA
Found at i:85698134 original size:43 final size:42
Alignment explanation
Indices: 85697979--85698135 Score: 140
Period size: 43 Copynumber: 3.7 Consensus size: 42
85697969 TGTGTTTTCG
*
85697979 TGTAAGACCACGTTTGGGACATTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCGA-TAT-TGA-TTACA
* * * * *
85698023 TGTAAGACCATGTCTGGGACATCGGCATC-TTATTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCGATA-TTGATTACA
* * *
85698065 TGTAAGACC-CTGTCTGGGATAGTGGCACCGATATTCGATTACA
1 TGTAAGACCAC-GTCTGGGACATTGGCATCGATATT-GATTACA
* *
85698108 TGTAAGACCACGTCTTGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
85698136 TGTACGAGCT
Statistics
Matches: 88, Mismatches: 19, Indels: 13
0.73 0.16 0.11
Matches are distributed among these distances:
42 29 0.33
43 31 0.35
44 28 0.32
ACGTcount: A:0.24, C:0.20, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCGATATTGATTACA
Found at i:85704689 original size:44 final size:42
Alignment explanation
Indices: 85704621--85704759 Score: 129
Period size: 42 Copynumber: 3.2 Consensus size: 42
85704611 CGATATGTGT
* * * * *
85704621 TTTCGTGTAAGACCACGTTTGGGACGTTGGTAT-TGACTTATGA
1 TTTCATGTAAGACCATGTCTGGGACATTGGCATCTGA-TT-TGA
*
85704664 TTTACATGTAAGACCATGTCTGGGACATTGGCATCTTATTTGA
1 TTT-CATGTAAGACCATGTCTGGGACATTGGCATCTGATTTGA
* * *
85704707 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC-GATATTCGA
1 TTTCATGTAAGACCATGTCTGGGACATTGGCATCTGAT-TT-GA
*
85704750 TTACATGTAA
1 TTTCATGTAA
85704760 AACTACATCT
Statistics
Matches: 80, Mismatches: 12, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
41 2 0.03
42 30 0.38
43 19 0.24
44 27 0.34
45 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.24, T:0.35
Consensus pattern (42 bp):
TTTCATGTAAGACCATGTCTGGGACATTGGCATCTGATTTGA
Found at i:85704726 original size:42 final size:44
Alignment explanation
Indices: 85704621--85704740 Score: 131
Period size: 42 Copynumber: 2.8 Consensus size: 44
85704611 CGATATGTGT
* * *
85704621 TTTCGTGTAAGACCAC-GTTTGGGACGTTGGTAT-TGACTTATGA
1 TTTCGTGTAAGACC-CTGTCTGGGACATTGGCATCTGACTTATGA
* * *
85704664 TTTACATGTAAGACCATGTCTGGGACATTGGCATCTTA-TT-TGA
1 TTT-CGTGTAAGACCCTGTCTGGGACATTGGCATCTGACTTATGA
*
85704707 TTTCGTGTAAGACCCTGTCTGGGACAGTGGCATC
1 TTTCGTGTAAGACCCTGTCTGGGACATTGGCATC
85704741 GATATTCGAT
Statistics
Matches: 65, Mismatches: 9, Indels: 7
0.80 0.11 0.09
Matches are distributed among these distances:
42 28 0.43
43 9 0.14
44 26 0.40
45 2 0.03
ACGTcount: A:0.22, C:0.17, G:0.26, T:0.35
Consensus pattern (44 bp):
TTTCGTGTAAGACCCTGTCTGGGACATTGGCATCTGACTTATGA
Found at i:85708474 original size:49 final size:46
Alignment explanation
Indices: 85708402--85708751 Score: 220
Period size: 47 Copynumber: 7.4 Consensus size: 46
85708392 TGTCACTGCT
*
85708402 ATGTCCCAGACATGGTCTTACACTGGCTAGCTCCATCGAGGCCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTA-CT-CATCGAGGCCGATG-C
* *
85708451 ATGTCCTAGACATGGTCTTACACTAGCT-CTCAT-GTACACGTGCTGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTACTCATCG---A-G-GCCGATGC
* ** * * *
85708500 ATGTCCTAGACAT-GTCTTACACTAGC-ACGAAACTTA-GCTGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTACTCATC-GAGGCCGATGC
* * *
85708544 ATGTCCCAGACA-CGTCTTACACTGGCTAACATCATTGAGGCCGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCT-AC-TCATCGAGGCCGATGC
* * *
85708591 ATGTCCCAGACAT-GTCTTACTCTAGC-ACTCACCTCTACGCCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTACTCA--TCGAGGCCGATG-C
* ** *
85708638 ATGTCCCAGACGTGGTCTTACACGGGCTA-TCAT-GACGCGACTGATGC
1 ATGTCCCAGACATGGTCTTACACTAGCTACTCATCGA-G-G-CCGATGC
* * * * *
85708685 ATGTCCCAGACA-CGTCTTACACTAGCCA-TCATCTCAATGTCGATGCC
1 ATGTCCCAGACATGGTCTTACACTAGCTACTCA--TCGAGGCCGATG-C
85708732 ATGTCCCAGACATGGTCTTA
1 ATGTCCCAGACATGGTCTTA
85708752 TATTGGCTCT
Statistics
Matches: 237, Mismatches: 37, Indels: 55
0.72 0.11 0.17
Matches are distributed among these distances:
44 34 0.14
45 4 0.02
46 35 0.15
47 74 0.31
48 41 0.17
49 43 0.18
50 6 0.03
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (46 bp):
ATGTCCCAGACATGGTCTTACACTAGCTACTCATCGAGGCCGATGC
Found at i:85708548 original size:44 final size:47
Alignment explanation
Indices: 85708492--85708618 Score: 147
Period size: 44 Copynumber: 2.8 Consensus size: 47
85708482 ATGTACACGT
*
85708492 GCTGATGCATGTCCTAGACATGTCTTACACTAGCACGA-AAC-TT-A-
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC-ACAACATTGAG
* * *
85708536 GCTGATGCATGTCCCAGACACGTCTTACACTGGCTA-ACATCATTGAG
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGC-ACACAACATTGAG
* *
85708583 GCCGATGCATGTCCCAGACATGTCTTACTCTAGCAC
1 GCTGATGCATGTCCCAGACATGTCTTACACTAGCAC
85708619 TCACCTCTAC
Statistics
Matches: 69, Mismatches: 8, Indels: 9
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 33 0.48
45 3 0.04
46 2 0.03
47 30 0.43
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (47 bp):
GCTGATGCATGTCCCAGACATGTCTTACACTAGCACACAACATTGAG
Found at i:85708687 original size:94 final size:93
Alignment explanation
Indices: 85708402--85708751 Score: 341
Period size: 94 Copynumber: 3.7 Consensus size: 93
85708392 TGTCACTGCT
* * * *
85708402 ATGTCCCAGACATGGTCTTACACTGGCTAGCTC-CATCGAGGCCGATGCCATGTCCTAGACATGG
1 ATGTCCCAGACAT-GTCTTACACTAGC-A-CTCACCTCTA-GCCGATGCCATGTCCCAGACATGG
* * *
85708466 TCTTACACTAGCTCTCATGTACACGTGCTGATGC
62 TCTTACACTGGCTATCATG-ACGCG-GCTGATGC
* ** * * *
85708500 ATGTCCTAGACATGTCTTACACTAGCACGAAACT-TAGCTGATG-CATGTCCCAGACA-CGTCTT
1 ATGTCCCAGACATGTCTTACACTAGCACTCACCTCTAGCCGATGCCATGTCCCAGACATGGTCTT
* * * * *
85708562 ACACTGGCTAACATCATTGAGGCCGATGC
66 ACACTGGCTATCATGA-CGCGGCTGATGC
* *
85708591 ATGTCCCAGACATGTCTTACTCTAGCACTCACCTCTACGCCGATGCCATGTCCCAGACGTGGTCT
1 ATGTCCCAGACATGTCTTACACTAGCACTCACCTCTA-GCCGATGCCATGTCCCAGACATGGTCT
* *
85708656 TACACGGGCTATCATGACGCGACTGATGC
65 TACACTGGCTATCATGACGCGGCTGATGC
* * * *
85708685 ATGTCCCAGACACGTCTTACACTAGC-CATCATCTCAATGTCGATGCCATGTCCCAGACATGGTC
1 ATGTCCCAGACATGTCTTACACTAGCAC-TCACCTCTA-GCCGATGCCATGTCCCAGACATGGTC
85708749 TTA
64 TTA
85708752 TATTGGCTCT
Statistics
Matches: 205, Mismatches: 40, Indels: 18
0.78 0.15 0.07
Matches are distributed among these distances:
91 37 0.18
92 19 0.09
93 19 0.09
94 84 0.41
95 20 0.10
96 2 0.01
97 12 0.06
98 12 0.06
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (93 bp):
ATGTCCCAGACATGTCTTACACTAGCACTCACCTCTAGCCGATGCCATGTCCCAGACATGGTCTT
ACACTGGCTATCATGACGCGGCTGATGC
Found at i:85716077 original size:44 final size:47
Alignment explanation
Indices: 85716022--85716144 Score: 166
Period size: 47 Copynumber: 2.7 Consensus size: 47
85716012 TACATGTGCT
*
85716022 GATGCATGTCCCAGACATGTCTTACACTAGCATGAA-AT-TT-A-GTC
1 GATGCATGTCCCAGACATGTCTTACACTAGCAT-AACATATTGAGGCC
*
85716066 GATGCATGTCCCAGACATGTCTTACACTGGC-TAACATCATTGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCATAACAT-ATTGAGGCC
*
85716113 AATGCATGTCCCAGACATGTCTTACACTAGCA
1 GATGCATGTCCCAGACATGTCTTACACTAGCA
85716145 CTCACCTCTA
Statistics
Matches: 69, Mismatches: 4, Indels: 8
0.85 0.05 0.10
Matches are distributed among these distances:
42 2 0.03
43 3 0.04
44 30 0.43
45 2 0.03
46 1 0.01
47 31 0.45
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCATAACATATTGAGGCC
Found at i:85716168 original size:47 final size:43
Alignment explanation
Indices: 85716020--85716174 Score: 134
Period size: 47 Copynumber: 3.4 Consensus size: 43
85716010 TGTACATGTG
* *
85716020 CTGATGCATGTCCCAGACATGTCTTACACTAGCA-TGAAATTTAGT
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCACT--CA-TTAGA
* *
85716065 C-GATGCATGTCCCAGACATGTCTTACACTGGCTAACATCATTGAGG
1 CTGATGCATGTCCCAGACATGTCTTACACTAGC--AC-TCATT-AGA
** *
85716111 CCAATGCATGTCCCAGACATGTCTTACACTAGCACTCACCTCTACA
1 CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCA--T-TAGA
85716157 CTGATGCCATGTCCCAGA
1 CTGATG-CATGTCCCAGA
85716175 TGTGGTCTTA
Statistics
Matches: 91, Mismatches: 9, Indels: 18
0.77 0.08 0.15
Matches are distributed among these distances:
44 33 0.36
45 5 0.05
46 11 0.12
47 41 0.45
48 1 0.01
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
CTGATGCATGTCCCAGACATGTCTTACACTAGCACTCATTAGA
Found at i:85716215 original size:47 final size:47
Alignment explanation
Indices: 85716157--85716268 Score: 215
Period size: 47 Copynumber: 2.4 Consensus size: 47
85716147 CACCTCTACA
85716157 CTGATGCCATGTCCCAGATGTGGTCTTACACGGGCTATCATGATGCGG
1 CTGATG-CATGTCCCAGATGTGGTCTTACACGGGCTATCATGATGCGG
85716205 CTGATGCATGTCCCAGATGTGGTCTTACACGGGCTATCATGATGCGG
1 CTGATGCATGTCCCAGATGTGGTCTTACACGGGCTATCATGATGCGG
85716252 CTGATGCATGTCCCAGA
1 CTGATGCATGTCCCAGA
85716269 CACGTTTTAC
Statistics
Matches: 64, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
47 58 0.91
48 6 0.09
ACGTcount: A:0.20, C:0.25, G:0.29, T:0.27
Consensus pattern (47 bp):
CTGATGCATGTCCCAGATGTGGTCTTACACGGGCTATCATGATGCGG
Found at i:85716322 original size:141 final size:141
Alignment explanation
Indices: 85716066--85716325 Score: 319
Period size: 141 Copynumber: 1.8 Consensus size: 141
85716056 AAATTTAGTC
* *
85716066 GATGCATGTCCCAGACATGTCTTACACTGGCTAACATCATTGAGGCCAATGCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACGGGCTAACATCATTGAGGCCAATGCATGTCCCAGACAC
* **
85716131 GTCTTACACTAGCACTCACCTCTACACTGATGCCATGTCCCAGATGTGGTCTTACACGGGCTATC
66 GTCTTACACTAGCACTCACCTCTACACTGATGCAATGTCCCAGAAATGGTCTTACACGGGCTATC
85716196 ATGATGCGGCT
131 ATGATGCGGCT
** * * * **
85716207 GATGCATGTCCCAGATGTGGTCTTACACGGGCTATCATGA-TGCGGCTGATGCATGTCCCAGACA
1 GATGCATGTCCCAGACAT-GTCTTACACGGGCTAACATCATTGAGGCCAATGCATGTCCCAGACA
* * ** *
85716271 CGTTTTACACTAGCCCTCGTCTC-A-ATGTCGATGCAATGTCCCAGAAATGGTCTTA
65 CGTCTTACACTAGCACTCACCTCTACA-CT-GATGCAATGTCCCAGAAATGGTCTTA
85716326 TACTGGCTCT
Statistics
Matches: 99, Mismatches: 17, Indels: 6
0.81 0.14 0.05
Matches are distributed among these distances:
139 1 0.01
140 2 0.02
141 78 0.79
142 18 0.18
ACGTcount: A:0.23, C:0.28, G:0.22, T:0.27
Consensus pattern (141 bp):
GATGCATGTCCCAGACATGTCTTACACGGGCTAACATCATTGAGGCCAATGCATGTCCCAGACAC
GTCTTACACTAGCACTCACCTCTACACTGATGCAATGTCCCAGAAATGGTCTTACACGGGCTATC
ATGATGCGGCT
Found at i:85719602 original size:39 final size:39
Alignment explanation
Indices: 85719559--85719637 Score: 158
Period size: 39 Copynumber: 2.0 Consensus size: 39
85719549 CGGTTCTCGA
85719559 AACAGTTAGTGTGAGTAAAAGTCTAGCTATACATGCCAT
1 AACAGTTAGTGTGAGTAAAAGTCTAGCTATACATGCCAT
85719598 AACAGTTAGTGTGAGTAAAAGTCTAGCTATACATGCCAT
1 AACAGTTAGTGTGAGTAAAAGTCTAGCTATACATGCCAT
85719637 A
1 A
85719638 CCTGTATTTT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 40 1.00
ACGTcount: A:0.37, C:0.15, G:0.20, T:0.28
Consensus pattern (39 bp):
AACAGTTAGTGTGAGTAAAAGTCTAGCTATACATGCCAT
Found at i:85729352 original size:31 final size:32
Alignment explanation
Indices: 85729311--85729373 Score: 85
Period size: 31 Copynumber: 2.0 Consensus size: 32
85729301 TTATTTATAA
*
85729311 AAGATATTTAT-TAATTAAATA-ATTATATTAT
1 AAGATATTTATGTAA-TAAATATATTAAATTAT
*
85729342 AAGATTTTTATGTAATAAATATATTAAATTAT
1 AAGATATTTATGTAATAAATATATTAAATTAT
85729374 GACAAGTGTG
Statistics
Matches: 28, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
31 16 0.57
32 12 0.43
ACGTcount: A:0.48, C:0.00, G:0.05, T:0.48
Consensus pattern (32 bp):
AAGATATTTATGTAATAAATATATTAAATTAT
Found at i:85731203 original size:47 final size:47
Alignment explanation
Indices: 85731149--85731255 Score: 151
Period size: 47 Copynumber: 2.3 Consensus size: 47
85731139 CGGATATTGT
* *
85731149 TACTGTTACTGTTTCGAATTTGTTTCGATGAAGTACTCTGTGTACCG
1 TACTGTTACTGTTCCGAATTTGTTCCGATGAAGTACTCTGTGTACCG
* * *
85731196 TACTGTTACTATTCCGGATTTGTTCCGATGAGGTACTCTGTGTACCG
1 TACTGTTACTGTTCCGAATTTGTTCCGATGAAGTACTCTGTGTACCG
* *
85731243 TATTGCTACTGTT
1 TACTGTTACTGTT
85731256 ACTGTTACTG
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
47 52 1.00
ACGTcount: A:0.18, C:0.19, G:0.21, T:0.42
Consensus pattern (47 bp):
TACTGTTACTGTTCCGAATTTGTTCCGATGAAGTACTCTGTGTACCG
Found at i:85731449 original size:18 final size:18
Alignment explanation
Indices: 85731383--85731468 Score: 100
Period size: 18 Copynumber: 4.7 Consensus size: 18
85731373 AAAGATCGAC
* *
85731383 TGTTACTGAATAATTTAAT
1 TGTTACTGAATAA-CTGAT
85731402 TGTTACTGAATAACTGAT
1 TGTTACTGAATAACTGAT
* * * *
85731420 TATTATTAAATAATTGAT
1 TGTTACTGAATAACTGAT
*
85731438 TGTTACTGAATAACTGAC
1 TGTTACTGAATAACTGAT
85731456 TGTTACTGAATAA
1 TGTTACTGAATAA
85731469 ATAATCGTTC
Statistics
Matches: 56, Mismatches: 11, Indels: 1
0.82 0.16 0.01
Matches are distributed among these distances:
18 43 0.77
19 13 0.23
ACGTcount: A:0.37, C:0.08, G:0.13, T:0.42
Consensus pattern (18 bp):
TGTTACTGAATAACTGAT
Found at i:85731468 original size:36 final size:37
Alignment explanation
Indices: 85731380--85731468 Score: 126
Period size: 36 Copynumber: 2.4 Consensus size: 37
85731370 TGGAAAGATC
85731380 GACTGTTACTGAATAATTTAATTGTTACTGAATAACT
1 GACTGTTACTGAATAATTTAATTGTTACTGAATAACT
* * * * *
85731417 GATTATTATTAAATAA-TTGATTGTTACTGAATAACT
1 GACTGTTACTGAATAATTTAATTGTTACTGAATAACT
85731453 GACTGTTACTGAATAA
1 GACTGTTACTGAATAA
85731469 ATAATCGTTC
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
36 31 0.72
37 12 0.28
ACGTcount: A:0.37, C:0.09, G:0.13, T:0.40
Consensus pattern (37 bp):
GACTGTTACTGAATAATTTAATTGTTACTGAATAACT
Found at i:85735383 original size:20 final size:18
Alignment explanation
Indices: 85735358--85735394 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
85735348 ATTGCTAAGT
85735358 TGTAAAATGAGTTGTAAATG
1 TGTAAAAT-AGTTG-AAATG
85735378 TGTAAAATAGTTGAAAT
1 TGTAAAATAGTTGAAAT
85735395 TATGAGTTGC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 4 0.24
19 5 0.29
20 8 0.47
ACGTcount: A:0.43, C:0.00, G:0.22, T:0.35
Consensus pattern (18 bp):
TGTAAAATAGTTGAAATG
Found at i:85736004 original size:46 final size:46
Alignment explanation
Indices: 85735952--85736127 Score: 198
Period size: 46 Copynumber: 3.8 Consensus size: 46
85735942 TGGTTGAGCA
85735952 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
85735998 TTCGAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
85736043 CATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
85736091 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
85736128 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 13, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 63 0.58
47 26 0.24
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:85736108 original size:93 final size:93
Alignment explanation
Indices: 85735949--85736119 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
85735939 GGATGGTTGA
* **
85735949 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTTCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
*
85736014 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
85736042 GCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
85736107 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
85736120 ACTTATGGGC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.20, C:0.20, G:0.30, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:85739711 original size:43 final size:43
Alignment explanation
Indices: 85739664--85739830 Score: 187
Period size: 43 Copynumber: 3.9 Consensus size: 43
85739654 GATTAACGAG
* *
85739664 ATGTGATTATATGTAAGACCATGTCTGGGAAATTGGCATCATT
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCATT
* *
85739707 ATGTGATTACGTGTAAGACCATGTCTGGGACATTGGCATCATT
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCATT
* * * * *
85739750 ATTTGATTTCGTGTAAGACCATAG-CTGGGCTATCGGCATCGA-T
1 ATGTGATTACATGTAAGACCAT-GTCTGGGATATTGGCATC-ATT
* * *
85739793 ACGTGATAACATGTAAGACCATATCTGGGATA-TGGCAT
1 ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCAT
85739831 TGTACGAGCT
Statistics
Matches: 105, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
42 5 0.05
43 98 0.93
44 2 0.02
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (43 bp):
ATGTGATTACATGTAAGACCATGTCTGGGATATTGGCATCATT
Found at i:85743006 original size:26 final size:26
Alignment explanation
Indices: 85742968--85743020 Score: 90
Period size: 26 Copynumber: 2.0 Consensus size: 26
85742958 CCAATTTCTG
85742968 TAAAAGTGAGCCTTTGTGGCTATCTC
1 TAAAAGTGAGCCTTTGTGGCTATCTC
85742994 TAAAAG-GACGCCTTTGTGGCTATCTC
1 TAAAAGTGA-GCCTTTGTGGCTATCTC
85743020 T
1 T
85743021 GTTAAAAAAG
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
25 2 0.08
26 24 0.92
ACGTcount: A:0.23, C:0.21, G:0.23, T:0.34
Consensus pattern (26 bp):
TAAAAGTGAGCCTTTGTGGCTATCTC
Found at i:85747358 original size:93 final size:93
Alignment explanation
Indices: 85747199--85747390 Score: 294
Period size: 93 Copynumber: 2.1 Consensus size: 93
85747189 AAAAATTTCA
* * * * **
85747199 ATTTCATCCCTATGCTCAGAAAATGAAATTCATGAAATTTAACCCTCTTTTCAAGCCTAGTCGAA
1 ATTTCATCCCTAGGCTCAGAAAATGAAATTCATGAAATATAACCCTATTTCCAAGCCTAGAAGAA
*
85747264 ATTTATATACTACATTTACAGTACATAC
66 ATTTATATACTACATTTACAGCACATAC
* * *
85747292 ATTTCGTCCCTAGGCTCTGAAAATGAAATTCATGAAATATAACCCTATTTCCATGCCTAGAAGAA
1 ATTTCATCCCTAGGCTCAGAAAATGAAATTCATGAAATATAACCCTATTTCCAAGCCTAGAAGAA
85747357 ATTTATATACTACATTTACAGCACATAC
66 ATTTATATACTACATTTACAGCACATAC
85747385 ATTTCA
1 ATTTCA
85747391 CAAATTTTAG
Statistics
Matches: 88, Mismatches: 11, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
93 88 1.00
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.33
Consensus pattern (93 bp):
ATTTCATCCCTAGGCTCAGAAAATGAAATTCATGAAATATAACCCTATTTCCAAGCCTAGAAGAA
ATTTATATACTACATTTACAGCACATAC
Found at i:85748021 original size:5 final size:5
Alignment explanation
Indices: 85748011--85748037 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
85748001 GATGCCAACC
85748011 ATAAA ATAAA ATAAA ATAAA ATAAA AT
1 ATAAA ATAAA ATAAA ATAAA ATAAA AT
85748038 TTTATTTTTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.78, C:0.00, G:0.00, T:0.22
Consensus pattern (5 bp):
ATAAA
Found at i:85752970 original size:26 final size:25
Alignment explanation
Indices: 85752941--85753000 Score: 77
Period size: 24 Copynumber: 2.4 Consensus size: 25
85752931 GAGTCATGGT
*
85752941 CAGTAAGCTCCTACTGAGCTGATAAA
1 CAGTAAGCTCCTACTGAGCT-AAAAA
*
85752967 CAGTAAGCT-CTATTGAGCTAAAAA
1 CAGTAAGCTCCTACTGAGCTAAAAA
*
85752991 CGGTAAGCTC
1 CAGTAAGCTC
85753001 TATTTAGCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
24 12 0.40
25 9 0.30
26 9 0.30
ACGTcount: A:0.35, C:0.22, G:0.20, T:0.23
Consensus pattern (25 bp):
CAGTAAGCTCCTACTGAGCTAAAAA
Found at i:85753065 original size:45 final size:45
Alignment explanation
Indices: 85752943--85753068 Score: 132
Period size: 43 Copynumber: 2.7 Consensus size: 45
85752933 GTCATGGTCA
*
85752943 GTAAGCTCCTACTGAGCTGATAAACAGTAAGCTCTATTGAGCTAAAAACG
1 GTAAGCTCC-AATGAGCTGA-AAA-AGTAAGCTCT-TTGAGCT-AAAACG
* * * *
85752993 GTAAGCTCTATTTAGCTG-AACAG-AAGCTCTTTCGAGCT-AAACG
1 GTAAGCTCCAATGAGCTGAAAAAGTAAGCTCTTT-GAGCTAAAACG
85753036 GTAAGCTCCAATGAGCTGAAAAAGTAAGCTCTT
1 GTAAGCTCCAATGAGCTGAAAAAGTAAGCTCTT
85753069 ACAATCTGAA
Statistics
Matches: 65, Mismatches: 8, Indels: 11
0.77 0.10 0.13
Matches are distributed among these distances:
43 20 0.31
44 6 0.09
45 20 0.31
46 2 0.03
47 2 0.03
49 7 0.11
50 8 0.12
ACGTcount: A:0.34, C:0.20, G:0.21, T:0.25
Consensus pattern (45 bp):
GTAAGCTCCAATGAGCTGAAAAAGTAAGCTCTTTGAGCTAAAACG
Found at i:85770774 original size:27 final size:27
Alignment explanation
Indices: 85770744--85770922 Score: 191
Period size: 27 Copynumber: 6.6 Consensus size: 27
85770734 ATATTGAGCC
* * *
85770744 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
85770771 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
85770798 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
85770826 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
85770853 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
*
85770880 CGCACACTTAGTGCAACATAGTCATA-T
1 CGCACACTTAGTGCTACATAGTCA-ACT
85770907 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
85770923 TACAATTTAA
Statistics
Matches: 130, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:85770883 original size:82 final size:81
Alignment explanation
Indices: 85770765--85770920 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
85770755 TGCTATATAA
* *
85770765 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85770830 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
85770847 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCATATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85770911 CACTTAGTGC
65 CACTTAGTGC
85770921 TATACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85771489 original size:13 final size:13
Alignment explanation
Indices: 85771471--85771495 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
85771461 TACTAAATTT
85771471 TCATGGATTCAAG
1 TCATGGATTCAAG
85771484 TCATGGATTCAA
1 TCATGGATTCAA
85771496 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:85799083 original size:27 final size:27
Alignment explanation
Indices: 85799053--85799230 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
85799043 ATATTGAGTC
* * * *
85799053 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
85799080 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85799107 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
85799135 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
85799162 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
85799189 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
85799216 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
85799231 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:85799192 original size:82 final size:81
Alignment explanation
Indices: 85799074--85799229 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
85799064 TGCTATATAA
* *
85799074 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
85799139 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
85799156 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
85799220 CACTTAGTGC
65 CACTTAGTGC
85799230 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:85803015 original size:21 final size:22
Alignment explanation
Indices: 85802961--85803016 Score: 69
Period size: 22 Copynumber: 2.6 Consensus size: 22
85802951 CAATTTGAAC
* *
85802961 AATGTGATGATTAAAAAAGTTA
1 AATGTGGTTATTAAAAAAGTTA
*
85802983 AATGTGGTTATTAAAAAATTTA
1 AATGTGGTTATTAAAAAAGTTA
*
85803005 AATTTGG-TATTA
1 AATGTGGTTATTA
85803017 TAGATCAAGA
Statistics
Matches: 30, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
21 5 0.17
22 25 0.83
ACGTcount: A:0.45, C:0.00, G:0.16, T:0.39
Consensus pattern (22 bp):
AATGTGGTTATTAAAAAAGTTA
Found at i:85803422 original size:42 final size:41
Alignment explanation
Indices: 85803360--85803518 Score: 129
Period size: 42 Copynumber: 3.7 Consensus size: 41
85803350 TAAGTGATTT
* *
85803360 CGTATAAGACCCTGTTTGGGACATGGCATCGATATGAGGTCC
1 CGTATAAGACCATGTCTGGGACATGGCATCGATATGA-GTCC
* * * *
85803402 CGTATAAGACCATGTCTGGGACATGGCGTCGGCACCGATTCGAGACTT
1 CGTATAAGACCATGTCTGGGACATGGCATC-G-A--TA-T-GAGTC-C
* * * *
85803450 CGTATAAGACCATATCTGGGATATGGCATCGATGTGTAGTTC
1 CGTATAAGACCATGTCTGGGACATGGCATCGATATG-AGTCC
* *
85803492 CATGTAAGACCATGTCTGGGACATGGC
1 CGTATAAGACCATGTCTGGGACATGGC
85803519 TTTGGTACCC
Statistics
Matches: 91, Mismatches: 18, Indels: 16
0.73 0.14 0.13
Matches are distributed among these distances:
42 51 0.56
43 4 0.04
44 1 0.01
46 2 0.02
47 4 0.04
48 29 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (41 bp):
CGTATAAGACCATGTCTGGGACATGGCATCGATATGAGTCC
Found at i:85807988 original size:38 final size:37
Alignment explanation
Indices: 85807944--85808063 Score: 123
Period size: 38 Copynumber: 3.1 Consensus size: 37
85807934 TTTAAACTTA
*
85807944 GATATAATACCAGCACTAGTCCTGCGGGATTTAACCCG
1 GATATAATACAAGCACTAG-CCTGCGGGATTTAACCCG
* * *
85807982 GATATAATACAAGCACGAAGCCTACGGGATTTAACTCG
1 GATATAATACAAGCAC-TAGCCTGCGGGATTTAACCCG
* * * *
85808020 GATATAATTCTAGCATATAGCCTGCGGGTCTTTAAGCCCG
1 GATATAATACAAGCA-CTAGCCTGCGGG-ATTTAA-CCCG
85808060 GATA
1 GATA
85808064 CACATCAAAT
Statistics
Matches: 67, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
38 53 0.79
39 7 0.10
40 7 0.10
ACGTcount: A:0.31, C:0.23, G:0.22, T:0.25
Consensus pattern (37 bp):
GATATAATACAAGCACTAGCCTGCGGGATTTAACCCG
Found at i:85808047 original size:76 final size:80
Alignment explanation
Indices: 85807915--85808063 Score: 182
Period size: 76 Copynumber: 1.9 Consensus size: 80
85807905 ACATAACACC
* * *
85807915 AGCATGAAGCCTACGAGACTTTAAACTTAGATATAATACCAGCACTAGTCCTGCGGG-ATTTAA-
1 AGCACGAAGCCTACGAGACTTTAAACTCAGATATAATACCAGCAATAGTCCTGCGGGTATTTAAG
85807978 CCCGGATATAATACA
66 CCCGGATATAATACA
* * * * *
85807993 AGCACGAAGCCTACGGGA-TTT-AACTCGGATATAATTCTAGCATATAG-CCTGCGGGTCTTTAA
1 AGCACGAAGCCTACGAGACTTTAAACTCAGATATAATACCAGCA-ATAGTCCTGCGGGTATTTAA
85808055 GCCCGGATA
65 GCCCGGATA
85808064 CACATCAAAT
Statistics
Matches: 60, Mismatches: 8, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
76 25 0.42
77 11 0.18
78 24 0.40
ACGTcount: A:0.32, C:0.22, G:0.21, T:0.25
Consensus pattern (80 bp):
AGCACGAAGCCTACGAGACTTTAAACTCAGATATAATACCAGCAATAGTCCTGCGGGTATTTAAG
CCCGGATATAATACA
Found at i:85810934 original size:33 final size:33
Alignment explanation
Indices: 85810890--85810972 Score: 139
Period size: 33 Copynumber: 2.5 Consensus size: 33
85810880 GTTTGCATTT
* * *
85810890 AATTATATCTTGCATTATATGTTTTCATCTTTA
1 AATTATGTCTTGCATTATATGTCTGCATCTTTA
85810923 AATTATGTCTTGCATTATATGTCTGCATCTTTA
1 AATTATGTCTTGCATTATATGTCTGCATCTTTA
85810956 AATTATGTCTTGCATTA
1 AATTATGTCTTGCATTA
85810973 AGAGTTTGCA
Statistics
Matches: 47, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 47 1.00
ACGTcount: A:0.27, C:0.13, G:0.10, T:0.51
Consensus pattern (33 bp):
AATTATGTCTTGCATTATATGTCTGCATCTTTA
Found at i:85810969 original size:20 final size:20
Alignment explanation
Indices: 85810915--85810970 Score: 63
Period size: 20 Copynumber: 3.1 Consensus size: 20
85810905 TATATGTTTT
85810915 CATCTTTAAATTATGTCTTG
1 CATCTTTAAATTATGTCTTG
85810935 CA---TT--A-TATGTC-TG
1 CATCTTTAAATTATGTCTTG
85810948 CATCTTTAAATTATGTCTTG
1 CATCTTTAAATTATGTCTTG
85810968 CAT
1 CAT
85810971 TAAGAGTTTG
Statistics
Matches: 29, Mismatches: 0, Indels: 14
0.67 0.00 0.33
Matches are distributed among these distances:
13 4 0.14
14 6 0.21
15 1 0.03
16 2 0.07
17 2 0.07
18 1 0.03
19 6 0.21
20 7 0.24
ACGTcount: A:0.25, C:0.16, G:0.11, T:0.48
Consensus pattern (20 bp):
CATCTTTAAATTATGTCTTG
Found at i:85810983 original size:33 final size:33
Alignment explanation
Indices: 85810876--85811004 Score: 137
Period size: 33 Copynumber: 4.1 Consensus size: 33
85810866 TTTCAGTTCA
*
85810876 ATAAGTTTGCA--TTT-AATTATATCTTGCATT
1 ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
* *
85810906 ATATGTTTTCATCTTTAAATTATGTCTTGCATT
1 ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
* *
85810939 ATATGTCTGCATCTTTAAATTATGTCTTGCATT
1 ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
* *
85810972 A-AGAGTTTGCA--TTT-AATTAAGTCATGCATT
1 ATA-AGTTTGCATCTTTAAATTATGTCTTGCATT
85811002 ATA
1 ATA
85811005 TTTATGTGTT
Statistics
Matches: 85, Mismatches: 9, Indels: 9
0.83 0.09 0.09
Matches are distributed among these distances:
30 24 0.28
31 4 0.05
32 4 0.05
33 53 0.62
ACGTcount: A:0.29, C:0.12, G:0.12, T:0.48
Consensus pattern (33 bp):
ATAAGTTTGCATCTTTAAATTATGTCTTGCATT
Found at i:85817154 original size:14 final size:14
Alignment explanation
Indices: 85817118--85817156 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
85817108 TTGTTTCACT
*
85817118 GAAAATGACTTCCG
1 GAAAATGATTTCCG
* *
85817132 AAAAATGATTTCTG
1 GAAAATGATTTCCG
85817146 GAAAATGATTT
1 GAAAATGATTT
85817157 ACTTTTCTAG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.10, G:0.18, T:0.31
Consensus pattern (14 bp):
GAAAATGATTTCCG
Found at i:85817887 original size:227 final size:227
Alignment explanation
Indices: 85817492--85817946 Score: 910
Period size: 227 Copynumber: 2.0 Consensus size: 227
85817482 TTAACAATTG
85817492 AACTTGATTTTCAAATTTGAAAAGTGAAGGGACTAAATTCTTGAAAATAAAAGTACAAAAACTAA
1 AACTTGATTTTCAAATTTGAAAAGTGAAGGGACTAAATTCTTGAAAATAAAAGTACAAAAACTAA
85817557 ATTGCAAATCTGTGAAGTGTACATAGACTTATGACATATTTTAACTTTAATACTACAAAACATTT
66 ATTGCAAATCTGTGAAGTGTACATAGACTTATGACATATTTTAACTTTAATACTACAAAACATTT
85817622 ATTATTAATATATGTATAATTGCAATAAATATTTATTATTATAATATTATTATTGAATATTTTCA
131 ATTATTAATATATGTATAATTGCAATAAATATTTATTATTATAATATTATTATTGAATATTTTCA
85817687 ATAATATGTGAATAATATTATTTAAAATTATT
196 ATAATATGTGAATAATATTATTTAAAATTATT
85817719 AACTTGATTTTCAAATTTGAAAAGTGAAGGGACTAAATTCTTGAAAATAAAAGTACAAAAACTAA
1 AACTTGATTTTCAAATTTGAAAAGTGAAGGGACTAAATTCTTGAAAATAAAAGTACAAAAACTAA
85817784 ATTGCAAATCTGTGAAGTGTACATAGACTTATGACATATTTTAACTTTAATACTACAAAACATTT
66 ATTGCAAATCTGTGAAGTGTACATAGACTTATGACATATTTTAACTTTAATACTACAAAACATTT
85817849 ATTATTAATATATGTATAATTGCAATAAATATTTATTATTATAATATTATTATTGAATATTTTCA
131 ATTATTAATATATGTATAATTGCAATAAATATTTATTATTATAATATTATTATTGAATATTTTCA
85817914 ATAATATGTGAATAATATTATTTAAAATTATT
196 ATAATATGTGAATAATATTATTTAAAATTATT
85817946 A
1 A
85817947 TTTTTAAAAT
Statistics
Matches: 228, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
227 228 1.00
ACGTcount: A:0.44, C:0.07, G:0.09, T:0.40
Consensus pattern (227 bp):
AACTTGATTTTCAAATTTGAAAAGTGAAGGGACTAAATTCTTGAAAATAAAAGTACAAAAACTAA
ATTGCAAATCTGTGAAGTGTACATAGACTTATGACATATTTTAACTTTAATACTACAAAACATTT
ATTATTAATATATGTATAATTGCAATAAATATTTATTATTATAATATTATTATTGAATATTTTCA
ATAATATGTGAATAATATTATTTAAAATTATT
Found at i:85817960 original size:16 final size:16
Alignment explanation
Indices: 85817929--85817965 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
85817919 ATGTGAATAA
85817929 TATTATTTAAAATTAT
1 TATTATTTAAAATTAT
85817945 TATT-TTTAAAATTTAT
1 TATTATTTAAAA-TTAT
85817961 TATTA
1 TATTA
85817966 AAATGAAATT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
15 7 0.37
16 12 0.63
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTTAAAATTAT
Found at i:85818024 original size:22 final size:21
Alignment explanation
Indices: 85817977--85818031 Score: 60
Period size: 22 Copynumber: 2.7 Consensus size: 21
85817967 AATGAAATTG
*
85817977 AAATATTAAA-TA-ATTTATT
1 AAATAATAAATTATATTTATT
85817996 AAATAATAAATTATATTTATT
1 AAATAATAAATTATATTTATT
* *
85818017 ATATTAATAATTTAT
1 A-AATAATAAATTAT
85818032 TATGTGACTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
19 9 0.30
20 2 0.07
21 8 0.27
22 11 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
AAATAATAAATTATATTTATT
Found at i:85819718 original size:17 final size:17
Alignment explanation
Indices: 85819696--85819734 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
85819686 GAATGATGAA
*
85819696 AGGAGATGCAAGAACCG
1 AGGAGAAGCAAGAACCG
85819713 AGGAGAAGCAAGAACCG
1 AGGAGAAGCAAGAACCG
85819730 AGGAG
1 AGGAG
85819735 CTTTAGTTAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.44, C:0.15, G:0.38, T:0.03
Consensus pattern (17 bp):
AGGAGAAGCAAGAACCG
Found at i:85828474 original size:30 final size:28
Alignment explanation
Indices: 85828438--85828507 Score: 90
Period size: 30 Copynumber: 2.5 Consensus size: 28
85828428 ATATTTTGGA
85828438 AAAATTACATTTTTGCCCCTAAGCTTTAT
1 AAAATTACATTTTTGCCCCTAAGC-TTAT
* *
85828467 CAAAATTACACTTTTGCCCCTATGCTTAT
1 -AAAATTACATTTTTGCCCCTAAGCTTAT
85828496 AAAA-TA-ATTTTT
1 AAAATTACATTTTT
85828508 ATTCAATTTC
Statistics
Matches: 37, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
26 5 0.14
27 2 0.05
28 4 0.11
29 4 0.11
30 22 0.59
ACGTcount: A:0.33, C:0.20, G:0.06, T:0.41
Consensus pattern (28 bp):
AAAATTACATTTTTGCCCCTAAGCTTAT
Found at i:85830875 original size:17 final size:19
Alignment explanation
Indices: 85830853--85830889 Score: 51
Period size: 17 Copynumber: 2.1 Consensus size: 19
85830843 TTTTAGGGAC
85830853 TAAATTGAAG-GC-AAAAG
1 TAAATTGAAGAGCGAAAAG
*
85830870 TAAATTTAAGAGCGAAAAG
1 TAAATTGAAGAGCGAAAAG
85830889 T
1 T
85830890 GTGAAATTAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 9 0.53
18 2 0.12
19 6 0.35
ACGTcount: A:0.51, C:0.05, G:0.22, T:0.22
Consensus pattern (19 bp):
TAAATTGAAGAGCGAAAAG
Found at i:85830986 original size:29 final size:29
Alignment explanation
Indices: 85830945--85831007 Score: 126
Period size: 29 Copynumber: 2.2 Consensus size: 29
85830935 TGTGGTGCCG
85830945 AAAATACAAATATGGAAGACCTAAGGACA
1 AAAATACAAATATGGAAGACCTAAGGACA
85830974 AAAATACAAATATGGAAGACCTAAGGACA
1 AAAATACAAATATGGAAGACCTAAGGACA
85831003 AAAAT
1 AAAAT
85831008 TTATAGCACA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 34 1.00
ACGTcount: A:0.57, C:0.13, G:0.16, T:0.14
Consensus pattern (29 bp):
AAAATACAAATATGGAAGACCTAAGGACA
Found at i:85831884 original size:17 final size:18
Alignment explanation
Indices: 85831852--85831886 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
85831842 TATTCTTCAT
*
85831852 TTTAATTTTCGTAATTTA
1 TTTAATTTTCGCAATTTA
85831870 TTTAA-TTTCGCAATTTA
1 TTTAATTTTCGCAATTTA
85831887 GATTCAACTT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 11 0.69
18 5 0.31
ACGTcount: A:0.29, C:0.09, G:0.06, T:0.57
Consensus pattern (18 bp):
TTTAATTTTCGCAATTTA
Found at i:85846987 original size:46 final size:44
Alignment explanation
Indices: 85846901--85847061 Score: 171
Period size: 46 Copynumber: 3.5 Consensus size: 44
85846891 GCATATCTAT
* *
85846901 GTCGATGCCATGTCCCAGGCATGGTCTTACACTGACACGTCTCGTA
1 GTCGATG-CATGTCCCAGACAT-GTCTTACACTGACACGTCTCGAA
* *
85846947 GTCGATGCATGTCCCATACATGTCTTACACTGGCTTACGTCTCGAA
1 GTCGATGCATGTCCCAGACATGTCTTACACTGAC--ACGTCTCGAA
* * *
85846993 GCCGATGCATGTCTCAGACATGTCTTACACTAGCACTCGTCTC-AA
1 GTCGATGCATGTCCCAGACATGTCTTACACT-G-ACACGTCTCGAA
*
85847038 TGCCGATGCCATGTCCCAGACATG
1 -GTCGATG-CATGTCCCAGACATG
85847062 GTTTTACATT
Statistics
Matches: 99, Mismatches: 10, Indels: 11
0.82 0.08 0.09
Matches are distributed among these distances:
44 12 0.12
45 14 0.14
46 57 0.58
47 15 0.15
48 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.21, T:0.27
Consensus pattern (44 bp):
GTCGATGCATGTCCCAGACATGTCTTACACTGACACGTCTCGAA
Found at i:85854555 original size:46 final size:45
Alignment explanation
Indices: 85854462--85854675 Score: 200
Period size: 46 Copynumber: 4.6 Consensus size: 45
85854452 GTCAGGTGCT
* *
85854462 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-GCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCTTCATCTCG-AGGCC
* * *
85854508 GATGCATGTCCCATACATGTCTTACATTGGCTTACGTCTCGAGGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTT-CATCTCGAGGCC
* * * * *
85854554 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCAATGCC
1 GATGCATGTCCCAGACATGTCTTACACTGGC-TTCATCTCGAGGCC
* * *
85854600 GATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATAAT-GTGGCC
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGCT-TCAT-CTCGAGGCC
*
85854648 GATGCATGTCCCAGACACGTCTTACACT
1 GATGCATGTCCCAGACATGTCTTACACT
85854676 AGCTCACACA
Statistics
Matches: 139, Mismatches: 21, Indels: 16
0.79 0.12 0.09
Matches are distributed among these distances:
44 11 0.08
45 14 0.10
46 65 0.47
47 26 0.19
48 22 0.16
49 1 0.01
ACGTcount: A:0.22, C:0.30, G:0.20, T:0.27
Consensus pattern (45 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTTCATCTCGAGGCC
Found at i:85854648 original size:94 final size:92
Alignment explanation
Indices: 85854462--85854683 Score: 247
Period size: 94 Copynumber: 2.4 Consensus size: 92
85854452 GTCAGGTGCT
* *
85854462 GATGCCATGTCCCAGACATGGTCTTACACT-G-ACACATCTCGTAGCCGATGCATGTCCCATACA
1 GATG-CATGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACA
* * *
85854525 TGTCTTACATTGGCTTACGTCTCGAGGCC
64 TGTCTTACACTGGCTTACATATCGAGGCC
* * *
85854554 GATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGCCATGTCCTAGACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCGATG-CATGTCCCAGACA
*
85854618 TGGTCTTACACTGGCTCT-CATAAT-GTGGCC
64 T-GTCTTACACTGGCT-TACAT-ATCGAGGCC
* *
85854648 GATGCATGTCCCAGACACGTCTTACACTAGCTCACA
1 GATGCATGTCCCAGACATGTCTTACACTAGCACACA
85854684 CAAGTGACCC
Statistics
Matches: 110, Mismatches: 13, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
90 10 0.09
91 16 0.15
92 18 0.16
93 12 0.11
94 52 0.47
95 2 0.02
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.27
Consensus pattern (92 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATG
TCTTACACTGGCTTACATATCGAGGCC
Found at i:85861353 original size:5 final size:5
Alignment explanation
Indices: 85861343--85861368 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
85861333 CCCAATTGAC
85861343 TATTT TATTT TATTT TATTT TATTT T
1 TATTT TATTT TATTT TATTT TATTT T
85861369 GCTATCACCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.19, C:0.00, G:0.00, T:0.81
Consensus pattern (5 bp):
TATTT
Found at i:85870428 original size:23 final size:22
Alignment explanation
Indices: 85870388--85870433 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
85870378 TTTATAACTA
85870388 TGTTATGTATACAATTTACATAT
1 TGTTATGTATACAATTTA-ATAT
* *
85870411 TGTTATGTATATATTTTAATAT
1 TGTTATGTATACAATTTAATAT
85870433 T
1 T
85870434 ATTAGTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (22 bp):
TGTTATGTATACAATTTAATAT
Found at i:85870486 original size:19 final size:19
Alignment explanation
Indices: 85870462--85870500 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
85870452 ATACTTTTTA
*
85870462 TGTATATTTCTAATATCAT
1 TGTATATTTCTAACATCAT
85870481 TGTATATTTCTAACATCAT
1 TGTATATTTCTAACATCAT
85870500 T
1 T
85870501 ATTATTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (19 bp):
TGTATATTTCTAACATCAT
Found at i:85871024 original size:22 final size:23
Alignment explanation
Indices: 85870972--85871026 Score: 62
Period size: 22 Copynumber: 2.5 Consensus size: 23
85870962 TTTATATATA
85870972 TTATGTATATATTTTAACATTAC
1 TTATGTATATATTTTAACATTAC
* *
85870995 TAAT-TATATATTTTTAC--TATC
1 TTATGTATATATTTTAACATTA-C
85871016 TTATGTATATA
1 TTATGTATATA
85871027 CTTCAAATAC
Statistics
Matches: 27, Mismatches: 3, Indels: 5
0.77 0.09 0.14
Matches are distributed among these distances:
20 2 0.07
21 4 0.15
22 18 0.67
23 3 0.11
ACGTcount: A:0.35, C:0.07, G:0.04, T:0.55
Consensus pattern (23 bp):
TTATGTATATATTTTAACATTAC
Found at i:85880186 original size:73 final size:73
Alignment explanation
Indices: 85879987--85880291 Score: 400
Period size: 73 Copynumber: 4.2 Consensus size: 73
85879977 TGATGTTTTT
* * * ** *
85879987 ATTTCTGTTTTC-AAAATTCAACTCATGTTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGG
1 ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
*
85880051 TATTTTCA
66 TAATTTCA
* * *
85880059 ATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCTCAGGACACGCCGA
1 ATTTCTGT-TTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGA
85880124 GGTAATTTCA
64 GGTAATTTCA
* * *
85880134 ATTTCTGTTTGTC-AAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACGCTGAG
1 ATTTCTGTTT-TCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
85880198 G-AATTTTCA
65 GTAA-TTTCA
85880207 ATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
1 ATTTCTG-TTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAG
* *
85880272 GTATTTTTA
65 GTAATTTCA
*
85880281 ATTTCTATTTT
1 ATTTCTGTTTT
85880292 TTCAATTTAT
Statistics
Matches: 205, Mismatches: 20, Indels: 15
0.85 0.08 0.06
Matches are distributed among these distances:
72 10 0.05
73 70 0.34
74 64 0.31
75 61 0.30
ACGTcount: A:0.29, C:0.17, G:0.21, T:0.34
Consensus pattern (73 bp):
ATTTCTGTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACACGCTGAGG
TAATTTCA
Found at i:85880284 original size:147 final size:147
Alignment explanation
Indices: 85879982--85880291 Score: 455
Period size: 147 Copynumber: 2.1 Consensus size: 147
85879972 TATTTTGATG
* * *
85879982 TTTTT-ATTTCTGTTTTCAAAATTCAACTCATGTTGTGAGAAATGAGTTGAGCCTCAAGACACGT
1 TTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGC
* *
85880046 TGAGGTATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGTCT
66 TGAGGAATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
*
85880111 CAGGACACGCCGAGGTA
131 CAAGACACGCCGAGGTA
* * ** * *
85880128 ATTTCAATTTCTGTTTGTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGGCACG
1 TTTTTAATTTCTGTTT-TCAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACG
85880193 CTGAGGAATTTTCAATTTCTG-CTTTTC-AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
65 CTGAGGAATTTTCAATTTCTGTC-TTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
*
85880256 CTCAAGACACGCTGAGGTA
129 CTCAAGACACGCCGAGGTA
*
85880275 TTTTTAATTTCTATTTT
1 TTTTTAATTTCTGTTTT
85880292 TTCAATTTAT
Statistics
Matches: 145, Mismatches: 16, Indels: 6
0.87 0.10 0.04
Matches are distributed among these distances:
146 4 0.03
147 76 0.52
148 65 0.45
ACGTcount: A:0.28, C:0.16, G:0.20, T:0.35
Consensus pattern (147 bp):
TTTTTAATTTCTGTTTTCAAAAATCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGC
TGAGGAATTTTCAATTTCTGTCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
CAAGACACGCCGAGGTA
Found at i:85880353 original size:88 final size:87
Alignment explanation
Indices: 85880201--85880522 Score: 363
Period size: 88 Copynumber: 3.7 Consensus size: 87
85880191 CGCTGAGGAA
* *
85880201 TTTTCAATTTCTGCTTTTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAAGACAC
1 TTTTCAATTTCT-ATTTTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACAC
*
85880266 GCTGAGGTATTTTTAATTTCTATT
64 GCTGAGGTATTTTCAATTTCTATT
*
85880290 TTTTCAATTTATATTCTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
1 TTTTCAATTTCTATT-TTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACG
* * *
85880355 CTGAAGTATTCTCGAA-ATCTA-T
65 CTGAGGTATTTTC-AATTTCTATT
* * * * *
85880377 TTTTCAAATTCTGTTTTCAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCT-TGGCTCACG
1 TTTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-ACAC-
*
85880441 TGCTGAGCTATTTTCAATTT-T-TGT
64 -GCTGAGGTATTTTCAATTTCTAT-T
* * *
85880465 TTTT-AATGTCTATTTT-AAAGAGTCAACTCATATTGCGAGAAGTGAGTTGAG-CTCAGGA
1 TTTTCAATTTCTATTTTCAAA-AATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGA
85880523 TCACATGCCG
Statistics
Matches: 198, Mismatches: 25, Indels: 23
0.80 0.10 0.09
Matches are distributed among these distances:
85 2 0.01
86 47 0.24
87 55 0.28
88 78 0.39
89 16 0.08
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (87 bp):
TTTTCAATTTCTATTTTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGC
TGAGGTATTTTCAATTTCTATT
Found at i:85882429 original size:23 final size:22
Alignment explanation
Indices: 85882389--85882434 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 22
85882379 TTTATAACTA
85882389 TGTTATGTATACAATTTACATAT
1 TGTTATGTATACAATTTA-ATAT
* *
85882412 TGTTATGTATATATTTTAATAT
1 TGTTATGTATACAATTTAATAT
85882434 T
1 T
85882435 ATTAATTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
22 5 0.24
23 16 0.76
ACGTcount: A:0.33, C:0.04, G:0.09, T:0.54
Consensus pattern (22 bp):
TGTTATGTATACAATTTAATAT
Found at i:85882488 original size:19 final size:19
Alignment explanation
Indices: 85882464--85882502 Score: 69
Period size: 19 Copynumber: 2.1 Consensus size: 19
85882454 TACTATTTTA
*
85882464 TGTATATTTCTAATATCAT
1 TGTATATTTCTAACATCAT
85882483 TGTATATTTCTAACATCAT
1 TGTATATTTCTAACATCAT
85882502 T
1 T
85882503 ATTATTTATA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.31, C:0.13, G:0.05, T:0.51
Consensus pattern (19 bp):
TGTATATTTCTAACATCAT
Found at i:85882613 original size:25 final size:25
Alignment explanation
Indices: 85882555--85882601 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
85882545 ATAGTTTTTT
85882555 TATAT-TATTATCATTTCTAATATA
1 TATATATATTATCATTTCTAATATA
85882579 TATATATATTAT-ATTT-T-ATATA
1 TATATATATTATCATTTCTAATATA
85882601 T
1 T
85882602 TATGTATGTA
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
22 6 0.27
23 1 0.05
24 9 0.41
25 6 0.27
ACGTcount: A:0.38, C:0.04, G:0.00, T:0.57
Consensus pattern (25 bp):
TATATATATTATCATTTCTAATATA
Found at i:85882953 original size:24 final size:22
Alignment explanation
Indices: 85882921--85882979 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 22
85882911 TTTAATATTA
85882921 TTATGTATATATTTTTCATATAT
1 TTATGTATATATTTTTCA-ATAT
85882944 GTTATGTATATTCATTTTTCAATAT
1 -TTATGTATA-T-ATTTTTCAATAT
85882969 TTAT-TATATAT
1 TTATGTATATAT
85882980 ATATTATGTA
Statistics
Matches: 33, Mismatches: 0, Indels: 7
0.82 0.00 0.17
Matches are distributed among these distances:
21 2 0.06
22 1 0.03
23 4 0.12
24 13 0.39
25 5 0.15
26 8 0.24
ACGTcount: A:0.31, C:0.05, G:0.05, T:0.59
Consensus pattern (22 bp):
TTATGTATATATTTTTCAATAT
Found at i:85894283 original size:100 final size:100
Alignment explanation
Indices: 85894110--85894420 Score: 532
Period size: 100 Copynumber: 3.1 Consensus size: 100
85894100 TTTGACATGA
*
85894110 GTGTCGCGACACTGAGCCTCCATGACCTCAAGGGTGCAAAACTTCAACAAGAAATCAATCTAGAG
1 GTGTCGCGACACTGAGCCTCCATGACCTCAAGGGTGCAAAACTTCAACAAGAAATCAACCTAGAG
*
85894175 TTAATTGTCGAGAGTGTCACGACACTTAGGATGTT
66 TTGATTGTCGAGAGTGTCACGACACTTAGGATGTT
* * *
85894210 GTGTCGTGACACTGAGCCTCCATGACCTCAAGGGTGCAAAACTTCAATAAGAAGTCAACCTAGAG
1 GTGTCGCGACACTGAGCCTCCATGACCTCAAGGGTGCAAAACTTCAACAAGAAATCAACCTAGAG
*
85894275 TTGATTGTCGAGAATGTCACGACACTTAGGATGTT
66 TTGATTGTCGAGAGTGTCACGACACTTAGGATGTT
* *
85894310 GTGTCACGACACTGAGCCTCCATGACCTCAAGGGTGCAAAAATTCAACAAGAAATCAACCTAGAG
1 GTGTCGCGACACTGAGCCTCCATGACCTCAAGGGTGCAAAACTTCAACAAGAAATCAACCTAGAG
*
85894375 TTGATTGTCGAGAGTGTCACGACACTTAGGGTGTT
66 TTGATTGTCGAGAGTGTCACGACACTTAGGATGTT
*
85894410 GTGTCACGACA
1 GTGTCGCGACA
85894421 ATGAACCCAA
Statistics
Matches: 198, Mismatches: 13, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
100 198 1.00
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (100 bp):
GTGTCGCGACACTGAGCCTCCATGACCTCAAGGGTGCAAAACTTCAACAAGAAATCAACCTAGAG
TTGATTGTCGAGAGTGTCACGACACTTAGGATGTT
Found at i:85897245 original size:70 final size:72
Alignment explanation
Indices: 85897091--85897251 Score: 272
Period size: 70 Copynumber: 2.3 Consensus size: 72
85897081 TCAACTTTAC
*
85897091 CCTTCTCCCTCTTTTTCATTCTCATGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
1 CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
85897156 CTTCCAA
66 CTTCCAA
* *
85897163 TCTTCTCTCTCTTTTTCATTCTCACGTCTGAAGCAT-TTC-TTTTTTCATTCTTCTTCCCATTTC
1 CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
*
85897226 CTTCCTA
66 CTTCCAA
85897233 CCTTCTCCCTCTTTTTCAT
1 CCTTCTCCCTCTTTTTCAT
85897252 GCTTTTATCT
Statistics
Matches: 83, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
70 47 0.57
71 3 0.04
72 33 0.40
ACGTcount: A:0.11, C:0.34, G:0.04, T:0.52
Consensus pattern (72 bp):
CCTTCTCCCTCTTTTTCATTCTCACGTCTGAAGCATCTTCTTTTTTTCATTCTTCTTCCCATTTC
CTTCCAA
Found at i:85900257 original size:33 final size:33
Alignment explanation
Indices: 85900218--85900284 Score: 116
Period size: 33 Copynumber: 2.0 Consensus size: 33
85900208 AACTCTTGTT
85900218 TCCATCATGGATGTTTGAACTTGATCAAATTGG
1 TCCATCATGGATGTTTGAACTTGATCAAATTGG
* *
85900251 TCCATCATGGATGTTTGGATTTGATCAAATTGG
1 TCCATCATGGATGTTTGAACTTGATCAAATTGG
85900284 T
1 T
85900285 TGGTTTAATC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 32 1.00
ACGTcount: A:0.25, C:0.13, G:0.22, T:0.39
Consensus pattern (33 bp):
TCCATCATGGATGTTTGAACTTGATCAAATTGG
Found at i:85900449 original size:13 final size:12
Alignment explanation
Indices: 85900419--85900452 Score: 52
Period size: 13 Copynumber: 2.8 Consensus size: 12
85900409 TATTATTTTT
85900419 ATAATTT-TTTA
1 ATAATTTATTTA
85900430 ATAATTTATTTA
1 ATAATTTATTTA
85900442 ATTAATTTATT
1 A-TAATTTATT
85900453 GATAAATTAG
Statistics
Matches: 21, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
11 7 0.33
12 5 0.24
13 9 0.43
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (12 bp):
ATAATTTATTTA
Found at i:85900772 original size:17 final size:17
Alignment explanation
Indices: 85900752--85900784 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
85900742 ATTAAGAATG
85900752 TTATTAAAATATATTTT
1 TTATTAAAATATATTTT
*
85900769 TTATTAAATTATATTT
1 TTATTAAAATATATTT
85900785 AATAATAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
TTATTAAAATATATTTT
Found at i:85900790 original size:55 final size:57
Alignment explanation
Indices: 85900731--85900851 Score: 149
Period size: 58 Copynumber: 2.1 Consensus size: 57
85900721 TTTAATTCAT
* *
85900731 ATAATAATTATATTAAGAATGTTATTAAA-ATAT-AT-TTTTTATTAAATTATATTTA
1 ATAATAATTATATTAA-AATATGATTAAATATATGATATTTTTATTAAATTATATTTA
* * * *
85900786 ATAATAATTATATTAAAATATGGTTAAATTATTTGTTATTTTTATTAAATTATTTTTA
1 ATAATAATTATATTAAAATATGATTAAA-TATATGATATTTTTATTAAATTATATTTA
85900844 ATAATAAT
1 ATAATAAT
85900852 CTTACTAAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
54 9 0.16
55 16 0.29
56 3 0.05
57 1 0.02
58 27 0.48
ACGTcount: A:0.44, C:0.00, G:0.04, T:0.52
Consensus pattern (57 bp):
ATAATAATTATATTAAAATATGATTAAATATATGATATTTTTATTAAATTATATTTA
Found at i:85901629 original size:51 final size:50
Alignment explanation
Indices: 85901526--85901628 Score: 197
Period size: 50 Copynumber: 2.1 Consensus size: 50
85901516 ATTTACTTAA
85901526 TTTCTTTAAAAAAAAATTGTGATCGGGGTATTCAATTTCTAAGATTATTT
1 TTTCTTTAAAAAAAAATTGTGATCGGGGTATTCAATTTCTAAGATTATTT
*
85901576 TTTCTTTTAAAAAAAATTGTGATCGGGGTATTCAATTTCTAAGATTATTT
1 TTTCTTTAAAAAAAAATTGTGATCGGGGTATTCAATTTCTAAGATTATTT
85901626 TTT
1 TTT
85901629 TTGATAACTT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 52 1.00
ACGTcount: A:0.32, C:0.08, G:0.14, T:0.47
Consensus pattern (50 bp):
TTTCTTTAAAAAAAAATTGTGATCGGGGTATTCAATTTCTAAGATTATTT
Found at i:85902444 original size:16 final size:16
Alignment explanation
Indices: 85902423--85902456 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
85902413 CTTCAACCTC
*
85902423 TCATTTCCTTCTCATT
1 TCATTTCCTCCTCATT
85902439 TCATTTCCTCCTCATT
1 TCATTTCCTCCTCATT
85902455 TC
1 TC
85902457 CTCTCCGTCC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.12, C:0.35, G:0.00, T:0.53
Consensus pattern (16 bp):
TCATTTCCTCCTCATT
Found at i:85903353 original size:13 final size:11
Alignment explanation
Indices: 85903325--85903358 Score: 68
Period size: 11 Copynumber: 3.1 Consensus size: 11
85903315 ATTTTTTTCT
85903325 CATATATTGTA
1 CATATATTGTA
85903336 CATATATTGTA
1 CATATATTGTA
85903347 CATATATTGTA
1 CATATATTGTA
85903358 C
1 C
85903359 TAATTCCTGC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 23 1.00
ACGTcount: A:0.35, C:0.12, G:0.09, T:0.44
Consensus pattern (11 bp):
CATATATTGTA
Found at i:85904593 original size:20 final size:20
Alignment explanation
Indices: 85904568--85904607 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
85904558 AATATTTTCC
* *
85904568 AGTAAATCATTTTACAGAAA
1 AGTAAAACACTTTACAGAAA
*
85904588 AGTAAAACACTTTCCAGAAA
1 AGTAAAACACTTTACAGAAA
85904608 TCATTTTACG
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.50, C:0.15, G:0.10, T:0.25
Consensus pattern (20 bp):
AGTAAAACACTTTACAGAAA
Found at i:85909013 original size:171 final size:171
Alignment explanation
Indices: 85908721--85909061 Score: 664
Period size: 171 Copynumber: 2.0 Consensus size: 171
85908711 CTCTTTAGCA
85908721 ACCATGATGATAACCTTTGGGGTTGCTTTGTTCATAGTTCTTCGAGACAGAATAGCATGGGTTTC
1 ACCATGATGATAACCTTTGGGGTTGCTTTGTTCATAGTTCTTCGAGACAGAATAGCATGGGTTTC
85908786 CTTTCCAATTATCTTGCTTGCTAGTTTGCCGGTTACCCTTTTCGCACTGCTGCAGTTCCCTCTTC
66 CTTTCCAATTATCTTGCTTGCTAGTTTGCCGGTTACCCTTTTCGCACTGCTGCAGTTCCCTCTTC
85908851 TTGTGGAGATTTTCATTTCCACTTATGGACCTGGAATCTTG
131 TTGTGGAGATTTTCATTTCCACTTATGGACCTGGAATCTTG
*
85908892 ACCATGATGATAACCTTTGGGGTTGCTTTGTTCATTGTTCTTCGAGACAGAATAGCATGGGTTTC
1 ACCATGATGATAACCTTTGGGGTTGCTTTGTTCATAGTTCTTCGAGACAGAATAGCATGGGTTTC
*
85908957 CTTTCCAATTATCTTGCTTGCTAGTTTGCCGGTTACCCTTTTCGCACTGTTGCAGTTCCCTCTTC
66 CTTTCCAATTATCTTGCTTGCTAGTTTGCCGGTTACCCTTTTCGCACTGCTGCAGTTCCCTCTTC
85909022 TTGTGGAGATTTTCATTTCCACTTATGGACCTGGAATCTT
131 TTGTGGAGATTTTCATTTCCACTTATGGACCTGGAATCTT
85909062 TGACAAGCCA
Statistics
Matches: 168, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
171 168 1.00
ACGTcount: A:0.17, C:0.23, G:0.20, T:0.40
Consensus pattern (171 bp):
ACCATGATGATAACCTTTGGGGTTGCTTTGTTCATAGTTCTTCGAGACAGAATAGCATGGGTTTC
CTTTCCAATTATCTTGCTTGCTAGTTTGCCGGTTACCCTTTTCGCACTGCTGCAGTTCCCTCTTC
TTGTGGAGATTTTCATTTCCACTTATGGACCTGGAATCTTG
Found at i:85909659 original size:12 final size:12
Alignment explanation
Indices: 85909644--85909669 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
85909634 TTAATTGATA
85909644 ATTTTTTAAATT
1 ATTTTTTAAATT
85909656 ATTTTTTAAATT
1 ATTTTTTAAATT
85909668 AT
1 AT
85909670 AATTTTAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (12 bp):
ATTTTTTAAATT
Found at i:85910570 original size:5 final size:6
Alignment explanation
Indices: 85910553--85910586 Score: 50
Period size: 6 Copynumber: 5.5 Consensus size: 6
85910543 CATCAAATAA
*
85910553 TCTTTT TCTTTT TCTTTT TCCTTTT CCTTTT TCT
1 TCTTTT TCTTTT TCTTTT T-CTTTT TCTTTT TCT
85910587 CTTAGAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
6 20 0.80
7 5 0.20
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (6 bp):
TCTTTT
Found at i:85910576 original size:13 final size:13
Alignment explanation
Indices: 85910553--85910585 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
85910543 CATCAAATAA
85910553 TCTTTTT-CTTTT
1 TCTTTTTCCTTTT
85910565 TCTTTTTCCTTTT
1 TCTTTTTCCTTTT
*
85910578 CCTTTTTC
1 TCTTTTTC
85910586 TCTTAGAGTT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 7 0.37
13 12 0.63
ACGTcount: A:0.00, C:0.24, G:0.00, T:0.76
Consensus pattern (13 bp):
TCTTTTTCCTTTT
Found at i:85911039 original size:16 final size:16
Alignment explanation
Indices: 85911012--85911054 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 16
85911002 TATTTAATCC
85911012 TATAATAAATTATTA-
1 TATAATAAATTATTAT
85911027 -AT-ATAAATTATTAT
1 TATAATAAATTATTAT
*
85911041 TTTAATAAATTATT
1 TATAATAAATTATT
85911055 TACTATTTTA
Statistics
Matches: 24, Mismatches: 1, Indels: 5
0.80 0.03 0.17
Matches are distributed among these distances:
13 11 0.46
14 2 0.08
15 1 0.04
16 10 0.42
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (16 bp):
TATAATAAATTATTAT
Found at i:85918139 original size:19 final size:19
Alignment explanation
Indices: 85918093--85918140 Score: 55
Period size: 19 Copynumber: 2.6 Consensus size: 19
85918083 GTATATATTT
85918093 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGTAGA
*
85918111 TAAATCTTATTT-GGATAGA
1 TAAATTTTATTTAGG-TAGA
*
85918130 TAAGTTTTATT
1 TAAATTTTATT
85918141 CATATTCTAG
Statistics
Matches: 25, Mismatches: 3, Indels: 3
0.81 0.10 0.10
Matches are distributed among these distances:
18 6 0.24
19 19 0.76
ACGTcount: A:0.35, C:0.02, G:0.15, T:0.48
Consensus pattern (19 bp):
TAAATTTTATTTAGGTAGA
Found at i:85925131 original size:12 final size:12
Alignment explanation
Indices: 85925116--85925148 Score: 59
Period size: 12 Copynumber: 2.8 Consensus size: 12
85925106 CCTAAACTCC
85925116 TCCATAAAAAAT
1 TCCATAAAAAAT
85925128 TCCATAAAAAAT
1 TCCATAAAAAAT
85925140 TCCA-AAAAA
1 TCCATAAAAA
85925149 GCCATATAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 5 0.24
12 16 0.76
ACGTcount: A:0.61, C:0.18, G:0.00, T:0.21
Consensus pattern (12 bp):
TCCATAAAAAAT
Found at i:85927131 original size:47 final size:45
Alignment explanation
Indices: 85927005--85927187 Score: 199
Period size: 47 Copynumber: 4.0 Consensus size: 45
85926995 CTATCATAAT
* * *
85927005 TTCACCCATAATGAACTCAGAACGCAACTCAACGAGCTCGGGTG-
1 TTCATCCATAATGAACTCAGAACGCAACTCAACGAGTTCGGATGC
*
85927049 TTCATATCCATAATGAACTCAGAACACAACTCAACGAGTTCGGATGC
1 TTC--ATCCATAATGAACTCAGAACGCAACTCAACGAGTTCGGATGC
*
85927096 TTGCATCCATAAGTGAACTCGGAACGCAACTCAACGAGTTCGGATGC
1 TT-CATCCATAA-TGAACTCAGAACGCAACTCAACGAGTTCGGATGC
* * * * *
85927143 CTCAT-AATTCTCACGAACTCGGAACGCAACTCAACGAGTTCGGAT
1 TTCATCCA---TAATGAACTCAGAACGCAACTCAACGAGTTCGGAT
85927188 CTCAATTTCC
Statistics
Matches: 121, Mismatches: 10, Indels: 13
0.84 0.07 0.09
Matches are distributed among these distances:
44 3 0.02
45 1 0.01
46 48 0.40
47 66 0.55
48 3 0.02
ACGTcount: A:0.32, C:0.27, G:0.19, T:0.21
Consensus pattern (45 bp):
TTCATCCATAATGAACTCAGAACGCAACTCAACGAGTTCGGATGC
Found at i:85927181 original size:94 final size:92
Alignment explanation
Indices: 85927010--85927187 Score: 241
Period size: 94 Copynumber: 1.9 Consensus size: 92
85927000 ATAATTTCAC
* * *
85927010 CCATAATGAACTCAGAACGCAACTCAACGAGCTCGGGTGTTCATATCCATAATGAACTCAGAACA
1 CCATAATGAACTCAGAACGCAACTCAACGAGCTCGGATGCTCATATCCATAACGAACTCAGAACA
85927075 CAACTCAACGAGTTCGGATGCTTGCAT
66 CAACTCAACGAGTTCGGATGCTTGCAT
* * * * *
85927102 CCATAAGTGAACTCGGAACGCAACTCAACGAGTTCGGATGCCTCATAATTC-TCACGAACTCGGA
1 CCATAA-TGAACTCAGAACGCAACTCAACGAGCTCGGATG-CTCAT-ATCCATAACGAACTCAGA
*
85927166 ACGCAACTCAACGAGTTCGGAT
63 ACACAACTCAACGAGTTCGGAT
85927188 CTCAATTTCC
Statistics
Matches: 74, Mismatches: 9, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
92 6 0.08
93 30 0.41
94 35 0.47
95 3 0.04
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.21
Consensus pattern (92 bp):
CCATAATGAACTCAGAACGCAACTCAACGAGCTCGGATGCTCATATCCATAACGAACTCAGAACA
CAACTCAACGAGTTCGGATGCTTGCAT
Found at i:85927693 original size:216 final size:216
Alignment explanation
Indices: 85927319--85927752 Score: 852
Period size: 216 Copynumber: 2.0 Consensus size: 216
85927309 AGTTCATACT
85927319 CATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATAACATTTCATGATA
1 CATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATAACATTTCATGATA
85927384 ATAATAAGCATCATATCATATAAACAACATTAAATTGCTTAAAACAACAATTATGTTACCTTATT
66 ATAATAAGCATCATATCATATAAACAACATTAAATTGCTTAAAACAACAATTATGTTACCTTATT
85927449 TACTCATGAACTTACCTCGGTACAAAATGTATAAATGTAACACCCCTTACCCGTACCCGAGGCTA
131 TACTCATGAACTTACCTCGGTACAAAATGTATAAATGTAACACCCCTTACCCGTACCCGAGGCTA
85927514 GGATAAGGTACGAGGCATTAC
196 GGATAAGGTACGAGGCATTAC
85927535 CATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAA-AGTAACATTTCATGAT
1 CATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACA-TAACATTTCATGAT
85927599 AATAATAAGCATCATATCATATAAACAACATTAAATTGCTTAAAACAACAATTATGTTACCTTAT
65 AATAATAAGCATCATATCATATAAACAACATTAAATTGCTTAAAACAACAATTATGTTACCTTAT
85927664 TTACTCATGAACTTACCTCGGTACAAAATGTATAAATGTAACACCCCTTACCCGTACCCGAGGCT
130 TTACTCATGAACTTACCTCGGTACAAAATGTATAAATGTAACACCCCTTACCCGTACCCGAGGCT
85927729 AGGATAAGGTACGAGGCATTAC
195 AGGATAAGGTACGAGGCATTAC
85927751 CA
1 CA
85927753 GACAAACATA
Statistics
Matches: 217, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
215 1 0.00
216 216 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (216 bp):
CATCAAGTAATTCACATAATTACATATTATTCAACAATAACCACAAAACATAACATTTCATGATA
ATAATAAGCATCATATCATATAAACAACATTAAATTGCTTAAAACAACAATTATGTTACCTTATT
TACTCATGAACTTACCTCGGTACAAAATGTATAAATGTAACACCCCTTACCCGTACCCGAGGCTA
GGATAAGGTACGAGGCATTAC
Found at i:85935100 original size:52 final size:51
Alignment explanation
Indices: 85934981--85935159 Score: 231
Period size: 51 Copynumber: 3.5 Consensus size: 51
85934971 ATGGATGCCC
* * * * *
85934981 AGTGACCTGCACATAGTACCACCCTTGT-AGTCAAAGCTACCTTCTTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGA-CCAAAGCTATCTTCTTCACAA
85935032 AGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTTCTTCACAA
1 AGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATC-TTCTTCACAA
* * *
85935084 AGTGGCCTTCATATAGTACCACACTTATGACC-AAGCTATC-TCTTCTCAA
1 AGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAA
85935133 AGTGG-CTTGCACATAGTACCACACTTG
1 AGTGGCCTT-CACATAGTACCACACTTG
85935160 AGTCACTAGT
Statistics
Matches: 115, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
48 3 0.03
49 29 0.25
51 42 0.37
52 41 0.36
ACGTcount: A:0.28, C:0.29, G:0.15, T:0.28
Consensus pattern (51 bp):
AGTGGCCTTCACATAGTACCACACTTGTGACCAAAGCTATCTTCTTCACAA
Found at i:85939657 original size:39 final size:40
Alignment explanation
Indices: 85939612--85939783 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
85939602 GCTCCTCGTT
* * *
85939612 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
85939652 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
85939691 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
85939731 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
85939771 CAAATGCCTTCGG
1 CAAATGCCTTCGG
85939784 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:85939712 original size:40 final size:39
Alignment explanation
Indices: 85939614--85939836 Score: 216
Period size: 40 Copynumber: 5.6 Consensus size: 39
85939604 TCCTCGTTCA
* * * *
85939614 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
85939653 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
85939692 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
85939732 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
85939772 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
85939813 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
85939837 CAGCATTCAA
Statistics
Matches: 157, Mismatches: 21, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 40 0.25
40 105 0.67
41 12 0.08
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:85939796 original size:80 final size:79
Alignment explanation
Indices: 85939612--85939836 Score: 240
Period size: 80 Copynumber: 2.8 Consensus size: 79
85939602 GCTCCTCGTT
* * * * *
85939612 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGG-
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGT-ACTCGCACAAAGCCTTCGGGACTTAACCCGGA
85939676 ATTTAATAACTCGCA
65 ATTTAATAACTCGCA
* * *
85939691 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTA-CTCGCACAAA-GCCTTCGGGACTTAACCCGG
* *
85939756 AATTT-GTATCTCGCA
64 AATTTAATAACTCGCA
* * * * *
85939771 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGT-AC-TCGCACAAAGCCTTCGGGACTTAACCCG
85939835 GA
63 GA
85939837 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
78 1 0.01
79 39 0.32
80 69 0.57
81 13 0.11
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTACTCGCACAAAGCCTTCGGGACTTAACCCGGAA
TTTAATAACTCGCA
Found at i:85939845 original size:41 final size:41
Alignment explanation
Indices: 85939768--85939845 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
85939758 TTTGTATCTC
* * *
85939768 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
85939809 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
85939846 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:85950600 original size:39 final size:40
Alignment explanation
Indices: 85950557--85950724 Score: 148
Period size: 40 Copynumber: 4.2 Consensus size: 40
85950547 CTCGTTCAAG
* * * *
85950557 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* *
85950596 TGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
85950636 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
85950676 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
85950716 TGCCTTCGG
1 TGCCTTCGG
85950725 ATCTTAGTCC
Statistics
Matches: 111, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
39 26 0.23
40 81 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:85950708 original size:80 final size:80
Alignment explanation
Indices: 85950592--85950770 Score: 224
Period size: 80 Copynumber: 2.2 Consensus size: 80
85950582 AGTAACTCAT
* * *
85950592 ACAATGCCTTCGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
85950656 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
85950671 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
85950735 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
85950752 ACAAAGCCTTCGGGACTTA
1 ACAAAGCCTTCGGGACTTA
85950771 GCCCAGACAG
Statistics
Matches: 88, Mismatches: 6, Indels: 11
0.84 0.06 0.10
Matches are distributed among these distances:
79 11 0.12
80 66 0.75
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.20, T:0.25
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:85950737 original size:40 final size:40
Alignment explanation
Indices: 85950594--85950724 Score: 201
Period size: 40 Copynumber: 3.3 Consensus size: 40
85950584 TAACTCATAC
* *
85950594 AATGCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
85950634 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
85950674 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
85950714 AATGCCTTCGG
1 AATGCCTTCGG
85950725 ATCTTAGTCC
Statistics
Matches: 82, Mismatches: 8, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
39 3 0.04
40 79 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:85950771 original size:40 final size:40
Alignment explanation
Indices: 85950597--85950774 Score: 157
Period size: 40 Copynumber: 4.5 Consensus size: 40
85950587 CTCATACAAT
* * * * *
85950597 GCCTTCGGGACTTAACCCGGATTTTAA-AACTCGCACGAAT
1 GCCTTCGGGACTTAGCCCGGA-ATTAATAACTAGCACAAAG
* * * *
85950637 GCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACAAAG
1 GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
* * *
85950677 GCCTTCGGGACTTAACCCGGAATTAATAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
* * *
85950717 GCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACAAA-
1 GCCTTCGGGA-CTTAGCCCGGAAT-TAATAAC-TAGCACAAAG
85950757 GCCTTCGGGACTTAGCCC
1 GCCTTCGGGACTTAGCCC
85950775 AGACAGCATT
Statistics
Matches: 119, Mismatches: 14, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 100 0.84
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGAATTAATAACTAGCACAAAG
Found at i:85951694 original size:99 final size:99
Alignment explanation
Indices: 85951381--85951687 Score: 231
Period size: 99 Copynumber: 3.1 Consensus size: 99
85951371 ATTCTTCTCC
85951381 ATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAAGGAGGTTCAAGAATCATCA
1 ATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAAGGAGGTTCAAGAATCATCA
85951446 AGTCATCATCACATGCATCATTAACAAGCTTCAT
66 AGTCATCATCACATGCATCATTAACAAGCTTCAT
** * * ** *** ** * **
85951480 ATTTAGCATGCAATG-AC--A----TTAACAC-AACCT-CTACCTAGGTCAAATCTTAACTCATC
1 ATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAAGG--AGGT-TCAA-GAATC
* * ** * **
85951536 CTCATGTC-TCATCACCACCACATCAATGCTAGCCGATTCTTC-T
62 ATCAAGTCATCATCA-CA-TGCATC-AT--TA-AC-AAGCTTCAT
85951579 CCATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAAGGAGGTTCAAGAATCAT
1 --ATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAAGGAGGTTCAAGAATCAT
85951644 CAAGTCATCATCACATGCATCATTAACAAGCTTCAT
64 CAAGTCATCATCACATGCATCATTAACAAGCTTCAT
85951680 ATTTAGCA
1 ATTTAGCA
85951688 TGCAATGGCA
Statistics
Matches: 142, Mismatches: 42, Indels: 48
0.61 0.18 0.21
Matches are distributed among these distances:
90 6 0.04
91 3 0.02
92 7 0.05
93 9 0.06
94 11 0.08
95 4 0.03
96 3 0.02
98 4 0.03
99 23 0.16
100 10 0.07
101 15 0.11
102 4 0.03
104 3 0.02
105 4 0.03
106 11 0.08
107 9 0.06
108 7 0.05
109 3 0.02
110 6 0.04
ACGTcount: A:0.36, C:0.25, G:0.12, T:0.27
Consensus pattern (99 bp):
ATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAAGGAGGTTCAAGAATCATCA
AGTCATCATCACATGCATCATTAACAAGCTTCAT
Found at i:85951705 original size:200 final size:200
Alignment explanation
Indices: 85951362--85951761 Score: 782
Period size: 200 Copynumber: 2.0 Consensus size: 200
85951352 GCACACAACT
85951362 TGCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAA
1 TGCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAA
85951427 GGAGGTTCAAGAATCATCAAGTCATCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
66 GGAGGTTCAAGAATCATCAAGTCATCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
85951492 ATGACATTAACACAACCTCTACCTAGGTCAAATCTTAACTCATCCTCATGTCTCATCACCACCAC
131 ATGACATTAACACAACCTCTACCTAGGTCAAATCTTAACTCATCCTCATGTCTCATCACCACCAC
85951557 ATCAA
196 ATCAA
85951562 TGCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAA
1 TGCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAA
85951627 GGAGGTTCAAGAATCATCAAGTCATCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
66 GGAGGTTCAAGAATCATCAAGTCATCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
* *
85951692 ATGGCATTAACACAACCTCTACCTAGGTCGAATCTTAACTCATCCTCATGTCTCATCACCACCAC
131 ATGACATTAACACAACCTCTACCTAGGTCAAATCTTAACTCATCCTCATGTCTCATCACCACCAC
85951757 ATCAA
196 ATCAA
85951762 ACATCAACCA
Statistics
Matches: 198, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.34, C:0.27, G:0.12, T:0.28
Consensus pattern (200 bp):
TGCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGTTCACTCAAAAATGCTAAAAA
GGAGGTTCAAGAATCATCAAGTCATCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
ATGACATTAACACAACCTCTACCTAGGTCAAATCTTAACTCATCCTCATGTCTCATCACCACCAC
ATCAA
Found at i:85952068 original size:56 final size:56
Alignment explanation
Indices: 85951991--85952102 Score: 197
Period size: 56 Copynumber: 2.0 Consensus size: 56
85951981 GATGAGAAAT
*
85951991 TTTTTTTTCTTTCTTCCTTAGAACATTCGGCCAAGGGGAAATGAAGAATGATGGAC
1 TTTTTTTTCTTTCTTCCTTAGAACATTCGGCCAAGGGGAAATGAAGAAAGATGGAC
* *
85952047 TTTTTTTTCTTTCTTCTTTAGAACATTCGGCCAAGGGGAGATGAAGAAAGATGGAC
1 TTTTTTTTCTTTCTTCCTTAGAACATTCGGCCAAGGGGAAATGAAGAAAGATGGAC
85952103 ACCCTTTTTT
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
56 53 1.00
ACGTcount: A:0.27, C:0.15, G:0.22, T:0.36
Consensus pattern (56 bp):
TTTTTTTTCTTTCTTCCTTAGAACATTCGGCCAAGGGGAAATGAAGAAAGATGGAC
Found at i:85955733 original size:19 final size:20
Alignment explanation
Indices: 85955704--85955743 Score: 55
Period size: 19 Copynumber: 2.0 Consensus size: 20
85955694 CAACGGATAC
85955704 AAAACTCTTGACATGACATG
1 AAAACTCTTGACATGACATG
* *
85955724 AAAA-TCTTGAGATGATATG
1 AAAACTCTTGACATGACATG
85955743 A
1 A
85955744 TAATGACTTG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.42, C:0.12, G:0.17, T:0.28
Consensus pattern (20 bp):
AAAACTCTTGACATGACATG
Found at i:85960291 original size:23 final size:23
Alignment explanation
Indices: 85960262--85960383 Score: 149
Period size: 22 Copynumber: 5.3 Consensus size: 23
85960252 TGATGAACAA
* *
85960262 TAAGCTCTATTGTGCTGAAATGG
1 TAAGCTCTATTGAGCTGAAACGG
*
85960285 TAAGCTCTATCGAGCTG-AACGG
1 TAAGCTCTATTGAGCTGAAACGG
*
85960307 TAAGCTCTATCGAGCTG-AACGG
1 TAAGCTCTATTGAGCTGAAACGG
* *
85960329 TAAGCTCTATTGAGCTGAAATGA
1 TAAGCTCTATTGAGCTGAAACGG
* *
85960352 TAAGCTCTAATGAGCTGAAAACAG
1 TAAGCTCTATTGAGCTG-AAACGG
85960376 TAAGCTCT
1 TAAGCTCT
85960384 TTCGAGATGA
Statistics
Matches: 87, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
22 42 0.48
23 34 0.39
24 11 0.13
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (23 bp):
TAAGCTCTATTGAGCTGAAACGG
Found at i:85960311 original size:45 final size:46
Alignment explanation
Indices: 85960261--85960389 Score: 154
Period size: 45 Copynumber: 2.8 Consensus size: 46
85960251 CTGATGAACA
* *
85960261 ATAAGCTCTATTGTGCTGAAATGGTAAGCTCTATCGAGCTG-AACG
1 ATAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCGAGCTGAAACG
* * * *
85960306 GTAAGCTCTATCGAGCTG-AACGGTAAGCTCTATTGAGCTGAAATG
1 ATAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCGAGCTGAAACG
* * *
85960351 ATAAGCTCTAATGAGCTGAAAACAGTAAGCTCTTTCGAG
1 ATAAGCTCTATTGAGCTG-AAACGGTAAGCTCTATCGAG
85960390 ATGATATTTC
Statistics
Matches: 69, Mismatches: 12, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
44 20 0.29
45 33 0.48
47 16 0.23
ACGTcount: A:0.31, C:0.18, G:0.24, T:0.27
Consensus pattern (46 bp):
ATAAGCTCTATTGAGCTGAAACGGTAAGCTCTATCGAGCTGAAACG
Found at i:85960346 original size:67 final size:68
Alignment explanation
Indices: 85960262--85960389 Score: 188
Period size: 67 Copynumber: 1.9 Consensus size: 68
85960252 TGATGAACAA
* * *
85960262 TAAGCTCTATTGTGCTGAAATGGTAAGCTCT-ATCGAGCTG-AACGGTAAGCTCTATCGAGCTGA
1 TAAGCTCTATTGAGCTGAAATGATAAGCTCTAAT-GAGCTGAAACAGTAAGCTCTATCGAGCTGA
85960325 ACGG
65 ACGG
*
85960329 TAAGCTCTATTGAGCTGAAATGATAAGCTCTAATGAGCTGAAAACAGTAAGCTCTTTCGAG
1 TAAGCTCTATTGAGCTGAAATGATAAGCTCTAATGAGCTG-AAACAGTAAGCTCTATCGAG
85960390 ATGATATTTC
Statistics
Matches: 54, Mismatches: 4, Indels: 4
0.87 0.06 0.06
Matches are distributed among these distances:
67 35 0.65
68 2 0.04
69 17 0.31
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (68 bp):
TAAGCTCTATTGAGCTGAAATGATAAGCTCTAATGAGCTGAAACAGTAAGCTCTATCGAGCTGAA
CGG
Found at i:85966217 original size:48 final size:48
Alignment explanation
Indices: 85966163--85966317 Score: 165
Period size: 48 Copynumber: 3.3 Consensus size: 48
85966153 TAGTTCAACT
** * * *
85966163 ATGGTCTTGTACTAGCTCTCGTCTCAATGTCGATGCCATGTCTCATAC
1 ATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGAC
* * * * *
85966211 ATGGTCTTACACTGGCTCTC--ATAATATGGCTGATG-CATGCCCCAGAC
1 ATGGTCTTACACTAGCTCTCGTCTCA-AT-GCCGATGCCATGTCCCAGAC
*
85966258 AT-GTCTTACACTAGCCCTCGTCTCAATGCCGATGCCATGTCCCAGAC
1 ATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGAC
85966305 ATGGTCTTACACT
1 ATGGTCTTACACT
85966318 GCATACAAAT
Statistics
Matches: 85, Mismatches: 16, Indels: 12
0.75 0.14 0.11
Matches are distributed among these distances:
46 23 0.27
47 28 0.33
48 34 0.40
ACGTcount: A:0.21, C:0.30, G:0.19, T:0.30
Consensus pattern (48 bp):
ATGGTCTTACACTAGCTCTCGTCTCAATGCCGATGCCATGTCCCAGAC
Found at i:85971673 original size:42 final size:42
Alignment explanation
Indices: 85971580--85971817 Score: 180
Period size: 42 Copynumber: 5.6 Consensus size: 42
85971570 TATCACGAAT
* * * * *
85971580 ATGGTCCTACATGTAATCTCATATCGAAGCCAATAG-CCCAG-C
1 ATGGTCTTACACGAAATCTCATAACGATGCC-AT-GTCCCAGAC
* *
85971622 TATGGTCTTAGACGAAATCTCATAACGATGCCATGTCCTAGAC
1 -ATGGTCTTACACGAAATCTCATAACGATGCCATGTCCCAGAC
* * * *
85971665 ATGGTCTTACATGTAATATCATACCGATGCCAATAG-CCCAG-C
1 ATGGTCTTACACGAAATCTCATAACGATGCC-AT-GTCCCAGAC
* * * *
85971707 TATGGTGTTACACGGAATCTCATATA-GATTCCATGTCCCAAAC
1 -ATGGTCTTACACGAAATCTCATA-ACGATGCCATGTCCCAGAC
* * * * *
85971750 ATGGTCTTACACGAAATATCATATCAAAGCCATGTCCAAGAC
1 ATGGTCTTACACGAAATCTCATAACGATGCCATGTCCCAGAC
* *
85971792 ATGGTCTTACATGAAGTCTCATAACG
1 ATGGTCTTACACGAAATCTCATAACG
85971818 GTGTCGATGC
Statistics
Matches: 152, Mismatches: 34, Indels: 19
0.74 0.17 0.09
Matches are distributed among these distances:
41 2 0.01
42 92 0.61
43 57 0.38
44 1 0.01
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (42 bp):
ATGGTCTTACACGAAATCTCATAACGATGCCATGTCCCAGAC
Found at i:85971726 original size:85 final size:85
Alignment explanation
Indices: 85971580--85971848 Score: 267
Period size: 85 Copynumber: 3.1 Consensus size: 85
85971570 TATCACGAAT
* * * *
85971580 ATGGTCCTACATGTAATCTCATATCGAAGCCAATAGCCCAGCTATGGTCTTAGACGAAATCTCAT
1 ATGGTCTTACATGTAATATCATACCGAAGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAT
* *
85971645 A-ACGATGCCATGTCCTAGAC
66 ATA-GATGCCATGTCCCAAAC
* * *
85971665 ATGGTCTTACATGTAATATCATACCGATGCCAATAGCCCAGCTATGGTGTTACACGGAATCTCAT
1 ATGGTCTTACATGTAATATCATACCGAAGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAT
*
85971730 ATAGATTCCATGTCCCAAAC
66 ATAGATGCCATGTCCCAAAC
* * * * * * *
85971750 ATGGTCTTACACGAAATATCATATCAAAGCC-AT-GTCCAAGAC-ATGGTCTTACATGAAGTCTC
1 ATGGTCTTACATGTAATATCATACCGAAGCCAATAG-CCCAG-CTATGGTCTTACACGAAATCTC
*
85971812 ATAACGGTGTCGATGCCATGTCCCAAAC
64 AT-A-----TAGATGCCATGTCCCAAAC
85971840 ATGGTCTTA
1 ATGGTCTTA
85971849 TATGGGACCT
Statistics
Matches: 153, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
83 1 0.01
84 24 0.16
85 101 0.66
86 1 0.01
90 26 0.17
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (85 bp):
ATGGTCTTACATGTAATATCATACCGAAGCCAATAGCCCAGCTATGGTCTTACACGAAATCTCAT
ATAGATGCCATGTCCCAAAC
Found at i:85971884 original size:48 final size:48
Alignment explanation
Indices: 85971840--85971946 Score: 137
Period size: 48 Copynumber: 2.2 Consensus size: 48
85971830 TGTCCCAAAC
*
85971840 ATGGTCTTATATGGGACCTCATA-TCGATACCAATGT-CATATCCCAGGT
1 ATGGTCTTATATGGGACCTCATACT-GATACCAAT-TCCATATCCCAGAT
* ** *
85971888 ATGGTCTTACATGGGGTCTCATACTGATGCCAATTCCATATCCCAGAT
1 ATGGTCTTATATGGGACCTCATACTGATACCAATTCCATATCCCAGAT
85971936 ATGGTCTTATA
1 ATGGTCTTATA
85971947 CGAGAACTCA
Statistics
Matches: 51, Mismatches: 6, Indels: 4
0.84 0.10 0.07
Matches are distributed among these distances:
47 1 0.02
48 49 0.96
49 1 0.02
ACGTcount: A:0.26, C:0.22, G:0.19, T:0.33
Consensus pattern (48 bp):
ATGGTCTTATATGGGACCTCATACTGATACCAATTCCATATCCCAGAT
Found at i:85976917 original size:21 final size:21
Alignment explanation
Indices: 85976891--85976933 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 21
85976881 TTAATAAAAC
* *
85976891 ATTTTGGTTTACTAAAACATG
1 ATTTTGGTCTACGAAAACATG
*
85976912 ATTTTGGTCTACGAAAATATG
1 ATTTTGGTCTACGAAAACATG
85976933 A
1 A
85976934 GAAAATAGGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (21 bp):
ATTTTGGTCTACGAAAACATG
Found at i:85979070 original size:9 final size:8
Alignment explanation
Indices: 85979040--85979084 Score: 56
Period size: 8 Copynumber: 5.5 Consensus size: 8
85979030 AAAGGTTAGG
*
85979040 TTTTTTTC
1 TTTTTTTA
85979048 TTTTTCTTCA
1 TTTTT-TT-A
85979058 TTTTTTTA
1 TTTTTTTA
85979066 TTTTTTTA
1 TTTTTTTA
85979074 -TTTTTTA
1 TTTTTTTA
85979081 TTTT
1 TTTT
85979085 GGGTTGTATT
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
7 7 0.21
8 17 0.52
9 4 0.12
10 5 0.15
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (8 bp):
TTTTTTTA
Found at i:85979427 original size:44 final size:44
Alignment explanation
Indices: 85979375--85980096 Score: 925
Period size: 44 Copynumber: 16.4 Consensus size: 44
85979365 CCCCGTCTAA
* * *
85979375 TACAGAGACGCCAAATCCGTTATCTACGATCTGCTCTCCGCTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
85979419 TACAGAGACGCCAAATCTGTTATCTTTGATCTACTCTCCGCC-C
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
85979462 TACAGAGACGCCAAATCTGTTACCTTTGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
85979506 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
85979550 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
85979594 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
85979638 TACAGAGATGCCAAATC----ATCTTCAATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
85979678 TATAGAGA-GCCAAATCTGTTATCTTCGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * *
85979721 TACAGAGATGTCAAATCTGTTATCTTCGATCTGCTCTCTGTCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
85979765 TACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
85979809 TACAGAGACGCCAAATCTGCTATCTACGATCTGCTCTCTGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * *
85979853 TACAAAGACGCCAAATCTGCTATCTTCGATCTTCTCTCTGCCAC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
85979897 TACAGAGACGCTAAATCTGCTGTCTGTTATCTTCGATCTGCTCTCCACCGC
1 TACAGAGACGCCAAA-------TCTGTTATCTTCGATCTGCTCTCCGCCGC
* * * * * *
85979948 TACAAAGATGCCAAATTTGTTATCTTCGATCTGCTCCCCACTGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* * *
85979992 TACAGAGACGCCAAATCTATTATCTTTGATCTGCTCCCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
*
85980036 TACAGAGACGCCAAATATGTTATCTTCGATCTGCTCTCCGCCGC
1 TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
* *
85980080 TACAGAAATGCCAAATC
1 TACAGAGACGCCAAATC
85980097 ATCTTGGATT
Statistics
Matches: 606, Mismatches: 59, Indels: 26
0.88 0.09 0.04
Matches are distributed among these distances:
39 8 0.01
40 28 0.05
43 70 0.12
44 464 0.77
51 36 0.06
ACGTcount: A:0.23, C:0.31, G:0.17, T:0.30
Consensus pattern (44 bp):
TACAGAGACGCCAAATCTGTTATCTTCGATCTGCTCTCCGCCGC
Found at i:85980172 original size:88 final size:88
Alignment explanation
Indices: 85980058--85980281 Score: 335
Period size: 88 Copynumber: 2.6 Consensus size: 88
85980048 AAATATGTTA
* * * *
85980058 TCTTCGATCTGCTCTCCGCC-GCTACAGAAATGCCAAATCATCTTGGATTTGCTTCAACGTAAAC
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
* *
85980122 ACGTGAAATCCAAATCAGTTATG
66 ACGTGAAAGCCAAATCAGCTATG
*
85980145 TCTTCGATCTGC-CCCCTGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTTAACGTAAA
1 TCTTCGATCTGCTCCCC-GCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAA
*
85980209 CACGTGAAAGCCAAATTAGCTATG
65 CACGTGAAAGCCAAATCAGCTATG
* *
85980233 TCTTCGATCTACTCCCCGCCTGATATAGAGATGCCAAATCATCTTGGAT
1 TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGAT
85980282 ATCTTCAGCT
Statistics
Matches: 124, Mismatches: 10, Indels: 5
0.89 0.07 0.04
Matches are distributed among these distances:
86 3 0.02
87 15 0.12
88 102 0.82
89 4 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.29
Consensus pattern (88 bp):
TCTTCGATCTGCTCCCCGCCTGATACAGAGATGCCAAATCATCTTGGATCTGCTTCAACGTAAAC
ACGTGAAAGCCAAATCAGCTATG
Found at i:85980489 original size:61 final size:64
Alignment explanation
Indices: 85980377--85980501 Score: 195
Period size: 61 Copynumber: 2.0 Consensus size: 64
85980367 TCATGTATCC
85980377 ATGCTTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
1 ATGCTTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
* *
85980441 ATGCTTTATGTCAAATAATTAGGATG-T-T-A-TGAAATGAATCAAATGCTCCTAACTAGATGTG
1 ATGC-TTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
85980502 TTATTATATG
Statistics
Matches: 58, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
61 31 0.53
62 1 0.02
63 1 0.02
64 5 0.09
65 20 0.34
ACGTcount: A:0.38, C:0.13, G:0.17, T:0.33
Consensus pattern (64 bp):
ATGCTTATGCCAAATAATTAGGATGCTATAATTGAAATGAATCAAATGCTCCTAACTAAATGTG
Found at i:85984282 original size:19 final size:19
Alignment explanation
Indices: 85984258--85984305 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
85984248 GGGAAAATCT
85984258 AATGCAAATGATGCAATGC
1 AATGCAAATGATGCAATGC
*
85984277 AATGCACATGATGCAATGC
1 AATGCAAATGATGCAATGC
85984296 AATGCAAATG
1 AATGCAAATG
85984306 CATGGGATGA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.42, C:0.17, G:0.21, T:0.21
Consensus pattern (19 bp):
AATGCAAATGATGCAATGC
Found at i:85984318 original size:24 final size:24
Alignment explanation
Indices: 85984268--85984321 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
85984258 AATGCAAATG
*
85984268 ATGCAATGCAATGCACATGATGCA
1 ATGCAATGCAATGCACAGGATGCA
**
85984292 ATGCAATGCAAATGCATGGGATG-A
1 ATGCAATGC-AATGCACAGGATGCA
85984316 ATGCAA
1 ATGCAA
85984322 AGGAAAGAAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
24 16 0.62
25 10 0.38
ACGTcount: A:0.39, C:0.17, G:0.24, T:0.20
Consensus pattern (24 bp):
ATGCAATGCAATGCACAGGATGCA
Found at i:85986338 original size:6 final size:7
Alignment explanation
Indices: 85986323--85986348 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
85986313 CGCTTTGAAA
85986323 TTTTATT
1 TTTTATT
85986330 TTTTATT
1 TTTTATT
85986337 TTTTATT
1 TTTTATT
85986344 TTTTA
1 TTTTA
85986349 AAAGGGAGTG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (7 bp):
TTTTATT
Found at i:85986448 original size:19 final size:19
Alignment explanation
Indices: 85986424--85986461 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
85986414 GAAATAAGTA
85986424 ATTTCAGGCAAATAGGTTG
1 ATTTCAGGCAAATAGGTTG
85986443 ATTTCAGGCAAATAGGTTG
1 ATTTCAGGCAAATAGGTTG
85986462 GCAATCTCAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.32, C:0.11, G:0.26, T:0.32
Consensus pattern (19 bp):
ATTTCAGGCAAATAGGTTG
Found at i:85988897 original size:23 final size:20
Alignment explanation
Indices: 85988871--85988918 Score: 51
Period size: 20 Copynumber: 2.2 Consensus size: 20
85988861 ACAAAAAGTC
85988871 TAGGGTTTTTCCATGATAATTTT
1 TAGGGTTTTTCC-T-A-AATTTT
* *
85988894 TAGGTTTTTTTCTAAATTTT
1 TAGGGTTTTTCCTAAATTTT
85988914 TAGGG
1 TAGGG
85988919 AAGAATATGA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
20 10 0.45
21 1 0.05
22 1 0.05
23 10 0.45
ACGTcount: A:0.21, C:0.06, G:0.19, T:0.54
Consensus pattern (20 bp):
TAGGGTTTTTCCTAAATTTT
Found at i:85997421 original size:34 final size:34
Alignment explanation
Indices: 85997378--85997447 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
85997368 TCTCCTAAGT
85997378 ATAAAACATGAAATTAAGGCATTAGGAGCATCGA
1 ATAAAACATGAAATTAAGGCATTAGGAGCATCGA
85997412 ATAAAACATGAAATTAAGGCATTAGGAGCATCGA
1 ATAAAACATGAAATTAAGGCATTAGGAGCATCGA
85997446 AT
1 AT
85997448 TCACCAATTC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.47, C:0.11, G:0.20, T:0.21
Consensus pattern (34 bp):
ATAAAACATGAAATTAAGGCATTAGGAGCATCGA
Found at i:85999730 original size:61 final size:61
Alignment explanation
Indices: 85999653--85999774 Score: 208
Period size: 61 Copynumber: 2.0 Consensus size: 61
85999643 AGTCTAAGCT
* * *
85999653 CGACTTACCTCTCCGTTGAATGATCATGGTGGTTTTAGGAGTTTATACTCCTCATTCCTGC
1 CGACTTACCTCGCCGTTGAATGATCATGGTGGTTTGAGGAGTTTATACTCCTCACTCCTGC
*
85999714 CGACTTACCTCGCCGTTGAATGATCATGGTGGTTTGGGGAGTTTATACTCCTCACTCCTGC
1 CGACTTACCTCGCCGTTGAATGATCATGGTGGTTTGAGGAGTTTATACTCCTCACTCCTGC
85999775 TATCAATCTC
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 57 1.00
ACGTcount: A:0.17, C:0.25, G:0.22, T:0.35
Consensus pattern (61 bp):
CGACTTACCTCGCCGTTGAATGATCATGGTGGTTTGAGGAGTTTATACTCCTCACTCCTGC
Found at i:86002026 original size:16 final size:16
Alignment explanation
Indices: 86002005--86002037 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
86001995 TTCTAAGAAG
86002005 TTTGCTAAGTGAGCAT
1 TTTGCTAAGTGAGCAT
86002021 TTTGCTAAGTGAGCAT
1 TTTGCTAAGTGAGCAT
86002037 T
1 T
86002038 GGGATCCTCA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.24, C:0.12, G:0.24, T:0.39
Consensus pattern (16 bp):
TTTGCTAAGTGAGCAT
Found at i:86003317 original size:31 final size:31
Alignment explanation
Indices: 86003281--86003341 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 31
86003271 TTTTTAGCCT
86003281 TTAGTGGAGCTTTT-AAGCGCCGCAAAAACTG
1 TTAGTGGAG-TTTTCAAGCGCCGCAAAAACTG
*
86003312 TTAGTGGTGTTTTCCCAAGCGCCGCAAAAA
1 TTAGTGGAGTTTT--CAAGCGCCGCAAAAA
86003342 ATGCCGCTAT
Statistics
Matches: 26, Mismatches: 1, Indels: 4
0.84 0.03 0.13
Matches are distributed among these distances:
30 4 0.15
31 8 0.31
33 14 0.54
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.26
Consensus pattern (31 bp):
TTAGTGGAGTTTTCAAGCGCCGCAAAAACTG
Done.