Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 251 of 297
Found at i:86003468 original size:43 final size:43
Alignment explanation
Indices: 86003410--86003512 Score: 136
Period size: 43 Copynumber: 2.4 Consensus size: 43
86003400 AAAAGATCAA
* * *
86003410 GACTTTTAGCGGCGTTTGTGAGAAAAGC-GCCGCTAAAAGTCAT
1 GACTTTTAGCGGCGTTTCTGAAAAAAGCAG-CGCTAAAAGCCAT
* *
86003453 GGCTTTTAGCGGCGTTTCTGAAAAAAGCAGCGTTAAAAGCCAT
1 GACTTTTAGCGGCGTTTCTGAAAAAAGCAGCGCTAAAAGCCAT
*
86003496 GACTTTTAGCAGCGTTT
1 GACTTTTAGCGGCGTTT
86003513 AGCGGTTCTT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
43 51 0.98
44 1 0.02
ACGTcount: A:0.27, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
GACTTTTAGCGGCGTTTCTGAAAAAAGCAGCGCTAAAAGCCAT
Found at i:86007257 original size:93 final size:93
Alignment explanation
Indices: 86007153--86007455 Score: 407
Period size: 93 Copynumber: 3.3 Consensus size: 93
86007143 ATGGGCTCCG
86007153 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTC
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTC
*
86007218 CAAGTTCACTTATGGATGCGAACGTCCA
66 CGAGTTCACTTATGGATGCGAACGTCCA
* * * * *
86007246 AACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGT--TTGGGCATCCGAACTCGTTGAGTTGAG
1 AACTCGTTGAGTTGAGTCCGAGTTC-GTGAAAT-GTAACTAGGCATCCGAGCTCGTTGAGTTGAG
* *
86007307 TTCGAGTTCACTTATGGATGCGAATGTCCA
64 TCCGAGTTCACTTATGGATGCGAACGTCCA
* * *
86007337 AACTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCTGAGCTCGTTGAGTTGAGTC
1 AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTC
* * * *
86007402 TGAGTTCACTTCTGGATGCGAACGCCCG
66 CGAGTTCACTTATGGATGCGAACGTCCA
* *
86007430 AGCTCGTTGAGTTGAGTCTGAGTTCG
1 AACTCGTTGAGTTGAGTCCGAGTTCG
86007456 CTTATGGGCG
Statistics
Matches: 182, Mismatches: 22, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
90 1 0.01
91 77 0.42
92 4 0.02
93 99 0.54
94 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (93 bp):
AACTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAGCTCGTTGAGTTGAGTC
CGAGTTCACTTATGGATGCGAACGTCCA
Found at i:86007270 original size:46 final size:46
Alignment explanation
Indices: 86007196--86007462 Score: 249
Period size: 46 Copynumber: 5.8 Consensus size: 46
86007186 TAACTAGGCA
* *
86007196 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
86007242 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTTG-G-GCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG-ATGCGAACG
* *
86007287 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * * *
86007333 TCCAAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G
* * * *
86007378 CATCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
* * * *
86007426 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86007463 GCGGGTTACA
Statistics
Matches: 179, Mismatches: 30, Indels: 24
0.77 0.13 0.10
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
44 2 0.01
45 40 0.22
46 94 0.53
47 28 0.16
48 2 0.01
50 4 0.02
51 3 0.02
ACGTcount: A:0.20, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
Found at i:86007313 original size:45 final size:45
Alignment explanation
Indices: 86007149--86007462 Score: 219
Period size: 46 Copynumber: 6.8 Consensus size: 45
86007139 ATATATGGGC
* * * *
86007149 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACT-AGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACT--TATG-GA-TGCGGCA
* * * *
86007196 TCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-GCA
* *
86007242 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGTTTG-GGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG-ATGCGGCA
* *
86007287 TCCGAACTCGTTGAGTTGAGTTCGAGTTCACTTATGGATGC-GAA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGCA
* * * *
86007331 TGTCCAAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATGTAACTAGGCA
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---C--GGCA
* * * * * *
86007380 TCTGAGCTCGTTGAGTTGAGTCTGAGTTCACTTCTGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCG-GCA
* * * *
86007426 CCCGAGCTCGTTGAGTTGAGTCTGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86007463 GCGGGTTACA
Statistics
Matches: 214, Mismatches: 36, Indels: 35
0.75 0.13 0.12
Matches are distributed among these distances:
43 4 0.02
44 5 0.02
45 41 0.19
46 100 0.47
47 56 0.26
48 2 0.01
49 2 0.01
50 4 0.02
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGGCA
Found at i:86013597 original size:29 final size:29
Alignment explanation
Indices: 86013560--86013633 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
86013550 GTTGTGAGAT
* * *
86013560 TGGCGCTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
86013589 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
86013618 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
86013634 TGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 5 0.12
29 35 0.88
ACGTcount: A:0.24, C:0.16, G:0.34, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:86014036 original size:40 final size:40
Alignment explanation
Indices: 86013984--86015020 Score: 1950
Period size: 40 Copynumber: 25.9 Consensus size: 40
86013974 TAAGTGACCA
* * * * *
86013984 TATCCGGACTAAGATCCGAAG-GCATTGGTGCGAGTTACTA
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTA-TG
* * * * *
86014024 AATTCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
* *
86014064 TATCCGGGCTAAGTTCCGAAAAGCATTCGTGCTAGTGATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014104 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014144 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014184 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014224 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014264 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014304 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014344 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014384 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014424 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014464 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014504 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014544 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014584 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014624 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014664 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014704 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014744 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014784 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014824 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014864 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014904 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014944 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
86014984 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTT
1 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTT
86015021 TGGGCTGATT
Statistics
Matches: 978, Mismatches: 18, Indels: 2
0.98 0.02 0.00
Matches are distributed among these distances:
40 966 0.99
41 12 0.01
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATG
Found at i:86016138 original size:40 final size:40
Alignment explanation
Indices: 86016089--86016442 Score: 465
Period size: 40 Copynumber: 8.8 Consensus size: 40
86016079 TTACTAAATT
*
86016089 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
86016129 CGGGTTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
** *
86016169 CGGGCTAAGTTTCGAAGAGCATTCATGCTAGCGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
*
86016209 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTAATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
86016249 CGGGCTAAGTTCCGAAAAGCATTCGTGCTAGTGATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
86016289 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTTATGTATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * *
86016329 CGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* ** * * * * *
86016369 CGTGCTAAACCCCAAAGAGCATTCGTGCTGGTGTTATATC
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
* * * *
86016409 CGGGCTAGGTCCCGAAGAGTAATCATGCTGGTGA
1 CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
86016443 CGTGTATTCG
Statistics
Matches: 280, Mismatches: 34, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 280 1.00
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATC
Found at i:86019174 original size:85 final size:86
Alignment explanation
Indices: 86019077--86019246 Score: 324
Period size: 86 Copynumber: 2.0 Consensus size: 86
86019067 AAAAGATCGA
*
86019077 ACGTGGATCGGGGAAAAT-AAAAAAAAATCGTTGAGTAGTTGAATTCGACTGTCCGTCGAAATCC
1 ACGTGGATCGGGGAAAATAAAAAAAAAATCGTTGAGTAGTCGAATTCGACTGTCCGTCGAAATCC
86019141 GAGGTAAGTCGTTAAGCAAAG
66 GAGGTAAGTCGTTAAGCAAAG
86019162 ACGTGGATCGGGGAAAATAAAAAAAAAATCGTTGAGTAGTCGAATTCGACTGTCCGTCGAAATCC
1 ACGTGGATCGGGGAAAATAAAAAAAAAATCGTTGAGTAGTCGAATTCGACTGTCCGTCGAAATCC
86019227 GAGGTAAGTCGTTAAGCAAA
66 GAGGTAAGTCGTTAAGCAAA
86019247 TATTTATTGT
Statistics
Matches: 83, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
85 18 0.22
86 65 0.78
ACGTcount: A:0.37, C:0.15, G:0.26, T:0.22
Consensus pattern (86 bp):
ACGTGGATCGGGGAAAATAAAAAAAAAATCGTTGAGTAGTCGAATTCGACTGTCCGTCGAAATCC
GAGGTAAGTCGTTAAGCAAAG
Found at i:86019706 original size:24 final size:23
Alignment explanation
Indices: 86019673--86019730 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
86019663 AGTTGAAAAG
86019673 TATAA-AATAAAATAAATAATGATA
1 TATAATAATAAAAT-AAT-ATGATA
*
86019697 -ATAATAATAAAATGATATGATA
1 TATAATAATAAAATAATATGATA
86019719 TATATATAATAA
1 TATA-ATAATAA
86019731 TGTTTGATTA
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 6 0.20
23 9 0.30
24 15 0.50
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (23 bp):
TATAATAATAAAATAATATGATA
Found at i:86020086 original size:49 final size:48
Alignment explanation
Indices: 86020004--86020161 Score: 264
Period size: 49 Copynumber: 3.2 Consensus size: 48
86019994 CTTACTTTGA
*
86020004 GAATGTGAAAGTG-TATATATGTGATAAGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
*
86020051 GAATGTGAAAGTGTATATATATGTGATAGGGCCTAATGGCCGTTGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
86020100 GAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCGATGTGAT
1 GAATGTGAAAGTGT-TATATATGTGATAGGGCCTAATGGCCGATGTGAT
86020149 GAATGTGATAAGT
1 GAATGTGA-AAGT
86020162 CCCGAAGGGC
Statistics
Matches: 104, Mismatches: 4, Indels: 3
0.94 0.04 0.03
Matches are distributed among these distances:
47 13 0.12
49 87 0.84
50 4 0.04
ACGTcount: A:0.30, C:0.08, G:0.31, T:0.31
Consensus pattern (48 bp):
GAATGTGAAAGTGTTATATATGTGATAGGGCCTAATGGCCGATGTGAT
Found at i:86020335 original size:37 final size:37
Alignment explanation
Indices: 86020279--86020357 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
86020269 CCGAGCTCTA
* * *
86020279 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
86020316 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
86020353 AAGAC
1 AAGAC
86020358 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:86022234 original size:31 final size:31
Alignment explanation
Indices: 86022196--86022272 Score: 93
Period size: 31 Copynumber: 2.5 Consensus size: 31
86022186 TCAGAACTAG
*
86022196 AATCAGAATCAGAATCAGA-ATCAGGTGACAA
1 AATCAGAATCAGAATCA-ATATCAGGTAACAA
* * *
86022227 AATCAGAATCAAAATCAATATTAGGTAACAG
1 AATCAGAATCAGAATCAATATCAGGTAACAA
*
86022258 AATCAAAATCAGAAT
1 AATCAGAATCAGAAT
86022273 GTGAATGCAA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
30 1 0.03
31 38 0.97
ACGTcount: A:0.52, C:0.14, G:0.14, T:0.19
Consensus pattern (31 bp):
AATCAGAATCAGAATCAATATCAGGTAACAA
Found at i:86022237 original size:6 final size:6
Alignment explanation
Indices: 86022185--86022219 Score: 54
Period size: 6 Copynumber: 5.8 Consensus size: 6
86022175 AAGAAACATT
86022185 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAG
86022220 GTGACAAAAT
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
5 1 0.04
6 25 0.93
7 1 0.04
ACGTcount: A:0.49, C:0.17, G:0.17, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:86022439 original size:27 final size:26
Alignment explanation
Indices: 86022391--86022450 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
86022381 GTGAGGCTGC
*
86022391 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
86022418 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
*
86022444 CATATAT
1 CAGATAT
86022451 ATATATATAT
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86022757 original size:27 final size:27
Alignment explanation
Indices: 86022727--86022832 Score: 140
Period size: 27 Copynumber: 3.9 Consensus size: 27
86022717 GGGTAAAATG
* * *
86022727 GTAATTTTACCCCACAAGGGTATCTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
86022754 GTAATTCTACCCTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
86022781 GTAATTCTACCCTACAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
86022808 GTATTTCTACCCTACAAGGGTATTT
1 GTAATTCTACCCTACAAGGGTATTT
86022833 TGGTAATTTT
Statistics
Matches: 70, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
27 70 1.00
ACGTcount: A:0.25, C:0.22, G:0.18, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:86022854 original size:27 final size:26
Alignment explanation
Indices: 86022824--86023003 Score: 119
Period size: 27 Copynumber: 6.7 Consensus size: 26
86022814 CTACCCTACA
**
86022824 AGGGTATTTTGGTAATTTTGTAAATC
1 AGGGTATTTTGGTAATTTTACAAATC
**** * **
86022850 GAGGGTAAAACGGTAATTCTGTAAATC
1 -AGGGTATTTTGGTAATTTTACAAATC
* *
86022877 AGGGGTACTTTGGTAATTTTACAAGTC
1 A-GGGTATTTTGGTAATTTTACAAATC
*** **
86022904 AAGGGTATTTCAATAATTTTACAGGTC
1 -AGGGTATTTTGGTAATTTTACAAATC
** *
86022931 GAGGGTATTTCAGTAATTTCACAAATC
1 -AGGGTATTTTGGTAATTTTACAAATC
86022958 AGGGGTATTTTGGTAATTTTACAAA-C
1 A-GGGTATTTTGGTAATTTTACAAATC
86022984 TAGGGGTATTTTGGTAATTT
1 -A-GGGTATTTTGGTAATTT
86023004 GGTAAACTAA
Statistics
Matches: 123, Mismatches: 26, Indels: 8
0.78 0.17 0.05
Matches are distributed among these distances:
26 3 0.02
27 119 0.97
28 1 0.01
ACGTcount: A:0.30, C:0.09, G:0.23, T:0.38
Consensus pattern (26 bp):
AGGGTATTTTGGTAATTTTACAAATC
Found at i:86022907 original size:81 final size:80
Alignment explanation
Indices: 86022821--86023009 Score: 191
Period size: 81 Copynumber: 2.3 Consensus size: 80
86022811 TTTCTACCCT
* **
86022821 ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAACGGTAA-TTCTGTAAATCAGGGGTAC
1 ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTC-ACAAATCAGGGGTAC
86022885 TTTGGTAATTTTACAA
65 TTTGGTAATTTTACAA
* *** ** ** *** *
86022901 GTCAAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTAT
1 -ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTAC
86022966 TTTGGTAATTTTACAA
65 TTTGGTAATTTTACAA
* *
86022982 ACTAGGGGTATTTTGGTAATTTGGTAAA
1 AC-AAGGGTATTTTGGTAATTTTGTAAA
86023010 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 25, Indels: 4
0.74 0.23 0.04
Matches are distributed among these distances:
80 1 0.01
81 77 0.95
82 3 0.04
ACGTcount: A:0.31, C:0.09, G:0.23, T:0.37
Consensus pattern (80 bp):
ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACT
TTGGTAATTTTACAA
Found at i:86024972 original size:6 final size:6
Alignment explanation
Indices: 86024954--86025037 Score: 57
Period size: 6 Copynumber: 13.7 Consensus size: 6
86024944 AAGAAACATT
* * *
86024954 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATTAG- GTGACAAA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* *
86025003 ATCAGA ATCAGT ATCAAGTA A-CAGA ATCAAA ATCA
1 ATCAGA ATCAGA ATC-AG-A ATCAGA ATCAGA ATCA
86025038 AAATGCGAAT
Statistics
Matches: 61, Mismatches: 9, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
5 4 0.07
6 50 0.82
7 5 0.08
8 2 0.03
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:86025031 original size:31 final size:31
Alignment explanation
Indices: 86024938--86025037 Score: 96
Period size: 31 Copynumber: 3.3 Consensus size: 31
86024928 TAACCCATTA
* * *
86024938 CAGAATAAGAAACATTATC-AG-AACTAGAAT
1 CAGAATCAGAATCAGTATCAAGTAAC-AGAAT
* * * * *
86024968 CAGAATCAGAATCAGAATTAGGTGACAAAAT
1 CAGAATCAGAATCAGTATCAAGTAACAGAAT
86024999 CAGAATCAGAATCAGTATCAAGTAACAGAAT
1 CAGAATCAGAATCAGTATCAAGTAACAGAAT
*
86025030 CAAAATCA
1 CAGAATCA
86025038 AAATGCGAAT
Statistics
Matches: 54, Mismatches: 14, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
30 14 0.26
31 38 0.70
32 2 0.04
ACGTcount: A:0.51, C:0.15, G:0.15, T:0.19
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAAGTAACAGAAT
Found at i:86025037 original size:19 final size:19
Alignment explanation
Indices: 86024963--86025038 Score: 52
Period size: 19 Copynumber: 4.1 Consensus size: 19
86024953 TATCAGAACT
*
86024963 AGAATCAGAATCAGAATC-
1 AGAATCAGAATCAAAATCA
* *
86024981 AGAATTAG-GTGACAAAATC-
1 AGAATCAGAAT--CAAAATCA
**
86025000 AGAATCAGAATCAGTATCA
1 AGAATCAGAATCAAAATCA
86025019 AGTAA-CAGAATCAAAATCA
1 AG-AATCAGAATCAAAATCA
86025038 A
1 A
86025039 AATGCGAATG
Statistics
Matches: 44, Mismatches: 9, Indels: 9
0.71 0.15 0.15
Matches are distributed among these distances:
17 1 0.02
18 12 0.27
19 28 0.64
20 3 0.07
ACGTcount: A:0.51, C:0.14, G:0.16, T:0.18
Consensus pattern (19 bp):
AGAATCAGAATCAAAATCA
Found at i:86025208 original size:27 final size:26
Alignment explanation
Indices: 86025160--86025219 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
86025150 GTGAGGCTGC
*
86025160 CAGATATTGTGACAAAGTCACCAGATA
1 CAGATATTGTGACAAAGCCACCAGA-A
* *
86025187 CAGATATTGTGACTAGGCCACCAGAA
1 CAGATATTGTGACAAAGCCACCAGAA
*
86025213 CATATAT
1 CAGATAT
86025220 ATATATATGT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 7 0.24
27 22 0.76
ACGTcount: A:0.38, C:0.20, G:0.18, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACAAAGCCACCAGAA
Found at i:86025519 original size:27 final size:27
Alignment explanation
Indices: 86025489--86025632 Score: 166
Period size: 27 Copynumber: 5.3 Consensus size: 27
86025479 GGGGTAAAAT
* **
86025489 GGTAATTTTACCCCACAAGGGTATCAC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
86025516 GGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
86025543 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
86025570 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
86025597 GGT-ATTTCTACCCTACAAGGGTATTTT
1 GGTAATTT-TACCCTACAAGGGTATTTC
86025624 GGTAATTTT
1 GGTAATTTT
86025633 GTAAATCGAG
Statistics
Matches: 103, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
26 3 0.03
27 96 0.93
28 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.19, T:0.36
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:86025697 original size:81 final size:80
Alignment explanation
Indices: 86025611--86025799 Score: 184
Period size: 81 Copynumber: 2.3 Consensus size: 80
86025601 TTTCTACCCT
**
86025611 ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAAC-GATAA-TTCTGTAAATCAGGGGTA
1 ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAACAG-TAATTTC-ACAAATCAGGGGTA
86025674 CTTTGGTAATTTTACAA
64 CTTTGGTAATTTTACAA
* *** ** ** *** *
86025691 GTCAAGGGTATTTCAATAATTTTACAGGTCGAGGGTATTTCAGTAATTTCACAAATCAGGGGTAT
1 -ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTAC
86025756 TTTGGTAATTTTACAA
65 TTTGGTAATTTTACAA
* *
86025772 ACTAGGGGTATTTTGGTAATTTGGTAAA
1 AC-AAGGGTATTTTGGTAATTTTGTAAA
86025800 CTAAAGTATT
Statistics
Matches: 81, Mismatches: 24, Indels: 6
0.73 0.22 0.05
Matches are distributed among these distances:
80 1 0.01
81 76 0.94
82 4 0.05
ACGTcount: A:0.32, C:0.09, G:0.23, T:0.37
Consensus pattern (80 bp):
ACAAGGGTATTTTGGTAATTTTGTAAATCGAGGGTAAAACAGTAATTTCACAAATCAGGGGTACT
TTGGTAATTTTACAA
Found at i:86025699 original size:27 final size:26
Alignment explanation
Indices: 86025669--86025793 Score: 99
Period size: 27 Copynumber: 4.6 Consensus size: 26
86025659 TGTAAATCAG
86025669 GGGTACTTTGGTAATTTTACAAGTCAA
1 GGGTA-TTTGGTAATTTTACAAGTCAA
** * *
86025696 GGGTATTTCAATAATTTTACAGGTCGA
1 GGGTATTT-GGTAATTTTACAAGTCAA
* * * *
86025723 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTT-GGTAATTTTACAAGTCAA
* *
86025750 GGGTATTTTGGTAATTTTACAA-ACTAG
1 GGGTA-TTTGGTAATTTTACAAGTC-AA
86025777 GGGTATTTTGGTAATTT
1 GGGTA-TTTGGTAATTT
86025794 GGTAAACTAA
Statistics
Matches: 82, Mismatches: 13, Indels: 6
0.81 0.13 0.06
Matches are distributed among these distances:
26 4 0.05
27 75 0.91
28 3 0.04
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (26 bp):
GGGTATTTGGTAATTTTACAAGTCAA
Found at i:86031930 original size:15 final size:15
Alignment explanation
Indices: 86031910--86031965 Score: 78
Period size: 15 Copynumber: 3.7 Consensus size: 15
86031900 GTATCTTGGG
86031910 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
86031925 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
*
86031940 TTTCTCTA-TCTTGGA
1 TTTCTTTATTC-TGGA
86031955 TTTCTTTATTC
1 TTTCTTTATTC
86031966 GTTTTTCTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
14 2 0.06
15 31 0.89
16 2 0.06
ACGTcount: A:0.11, C:0.16, G:0.12, T:0.61
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86031942 original size:30 final size:30
Alignment explanation
Indices: 86031906--86031965 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
86031896 TATCGTATCT
*
86031906 TGGGTTTCTTTAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTCTATCT-TGGATTTCTTTATTC
86031936 TGGGTTTCTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTCTATCTTGGATTTCTTTATTC
86031966 GTTTTTCTTG
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.10, C:0.15, G:0.17, T:0.58
Consensus pattern (30 bp):
TGGGTTTCTCTATCTTGGATTTCTTTATTC
Found at i:86034050 original size:30 final size:30
Alignment explanation
Indices: 86033992--86034051 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
86033982 TTCCCGAGCC
*
86033992 TAGGGGCAAAAGTGTAATTATGCTAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCCAAAGTT
* *
86034022 TAGGGGCAAAAGTGTAATTTTTCCAAAGTT
1 TAGGGGCAAAAGTGTAATTATGCCAAAGTT
86034052 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.35, C:0.08, G:0.25, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAATTATGCCAAAGTT
Found at i:86034530 original size:46 final size:46
Alignment explanation
Indices: 86034474--86034643 Score: 190
Period size: 46 Copynumber: 3.7 Consensus size: 46
86034464 TGGTTGAGCA
86034474 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATG
*
86034520 TCCGAACTCGTTGAGTTGAGTCCGAGTT---C-GTGAGATGT-AACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATG-GATGTGAA-T--G
* * *
86034565 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATG
*
86034613 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCAC
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCAC
86034644 TTAGGGGCGG
Statistics
Matches: 106, Mismatches: 6, Indels: 24
0.78 0.04 0.18
Matches are distributed among these distances:
42 4 0.04
43 7 0.07
45 5 0.05
46 53 0.50
47 28 0.26
48 1 0.01
50 4 0.04
51 4 0.04
ACGTcount: A:0.22, C:0.22, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATG
Found at i:86034630 original size:93 final size:93
Alignment explanation
Indices: 86034471--86034641 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
86034461 GGATGGTTGA
* * *
86034471 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGTGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCCAACTCGTTGAGT
86034536 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
86034564 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCCAA-CTCGTTGAG
86034628 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
86034642 ACTTAGGGGC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 69 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACCTATGGATGCGAACGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86035214 original size:13 final size:13
Alignment explanation
Indices: 86035175--86035204 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
86035165 ATTTAAATTA
86035175 TATTTGATGTTTT
1 TATTTGATGTTTT
86035188 TATTTGATGTTTT
1 TATTTGATGTTTT
86035201 TATT
1 TATT
86035205 CTTATTTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.17, C:0.00, G:0.13, T:0.70
Consensus pattern (13 bp):
TATTTGATGTTTT
Found at i:86037595 original size:37 final size:37
Alignment explanation
Indices: 86037545--86037650 Score: 194
Period size: 37 Copynumber: 2.9 Consensus size: 37
86037535 GCTCGAATAG
*
86037545 TCTCCACACGTAGTTATCGGGTCTTACCCGGACAAAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
*
86037582 TCTCCACACGTAGTCATCGGGTCTTACCCGGACATAA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
86037619 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 TCTCCACACGTAGTCATCGGGTCTTACCCGGA
86037651 ATATATTTCC
Statistics
Matches: 67, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 67 1.00
ACGTcount: A:0.24, C:0.32, G:0.20, T:0.25
Consensus pattern (37 bp):
TCTCCACACGTAGTCATCGGGTCTTACCCGGACAAAA
Found at i:86037849 original size:48 final size:48
Alignment explanation
Indices: 86037791--86038310 Score: 968
Period size: 48 Copynumber: 10.8 Consensus size: 48
86037781 ATATACACAC
* * *
86037791 ATCTCCTACATATTTCACACTAGCCATTCCGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86037839 ATCTCATACATATTTCACACTAGCCATTTGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86037887 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86037935 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
*
86037983 ATCTCATACATATTTCACTTTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86038031 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86038079 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86038127 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86038175 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
86038223 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
* *
86038271 ATCTCATATATATTTCACACTAGCCATTCGGCTTTACCAC
1 ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCAC
86038311 GCACATATAT
Statistics
Matches: 463, Mismatches: 9, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 463 1.00
ACGTcount: A:0.31, C:0.28, G:0.06, T:0.35
Consensus pattern (48 bp):
ATCTCATACATATTTCACATTAGCCATTCGGCTTTACCACATATACAT
Found at i:86042117 original size:188 final size:187
Alignment explanation
Indices: 86041755--86042122 Score: 440
Period size: 188 Copynumber: 2.0 Consensus size: 187
86041745 AAGGCTATAA
* * * **
86041755 AACGACGTAGTTTCTGCAATCTATTAATAGATTTTTGTGGCGTTTCTAGCGAAAACGCCGGTATT
1 AACGACGCAGTTTCTGCAATCTACTAATAGATGTTTGTGGCGTTTCTAGCGAAAACGCCGGTAAA
* * * *
86041820 TCACATATTTTGTGGCGTTTATAAAAGCGCCACTAATAAAAGGCTATAAAACGATGACGTTTTGA
66 TCACACATTTTGCGGCGTTTATAAAAGCGCCACTAATAAAAGGATATAAAACGATCACGTTTTGA
*
86041885 AATCTCTTTAGATGTTTTGTGACATTTTTCCAAGAAGTGCCACTAATAACTTGGTAAT
131 AATCTCTTTAGATGTTTTGTGA-ATTTTTCCAAGAAGCGCCACTAATAACTTGGTAAT
* * * *
86041943 AACGACGCCGTTT-TGCAATCTACTAATAGATGTTTGTGGTGTTTTCTAGTGAAAACGTCGGTAA
1 AACGACGCAGTTTCTGCAATCTACTAATAGATGTTTGTGGCG-TTTCTAGCGAAAACGCCGGTAA
* * *
86042007 ATCACACCTTTTGCGGCGTTTATAGAAGCGCCACTAATAAGAAGGATAT-AAAGGA-CACCGTTT
65 ATCACACATTTTGCGGCGTTTATAAAAGCGCCACTAATAA-AAGGATATAAAACGATCA-CGTTT
* * ***
86042070 T-ACATTCTCTTAATAGATGTTTTGTG-GTTTTTTTTAGAAGCGCCACTAATAAC
128 TGA-AATCTCTT--TAGATGTTTTGTGAATTTTTCCAAGAAGCGCCACTAATAAC
86042123 AAAGCTTCAA
Statistics
Matches: 152, Mismatches: 22, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
187 27 0.18
188 105 0.69
189 7 0.05
190 13 0.09
ACGTcount: A:0.30, C:0.17, G:0.19, T:0.35
Consensus pattern (187 bp):
AACGACGCAGTTTCTGCAATCTACTAATAGATGTTTGTGGCGTTTCTAGCGAAAACGCCGGTAAA
TCACACATTTTGCGGCGTTTATAAAAGCGCCACTAATAAAAGGATATAAAACGATCACGTTTTGA
AATCTCTTTAGATGTTTTGTGAATTTTTCCAAGAAGCGCCACTAATAACTTGGTAAT
Found at i:86042227 original size:3 final size:3
Alignment explanation
Indices: 86042221--86042252 Score: 55
Period size: 3 Copynumber: 10.7 Consensus size: 3
86042211 TTTTTTCCTT
*
86042221 TTA TTA TTA CTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
86042253 TACTATTAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
3 27 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:86042638 original size:21 final size:21
Alignment explanation
Indices: 86042614--86042666 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
86042604 GTTTAAGGTT
*
86042614 TTATGGTTTTGGATTTAGGGC
1 TTATGGTTTTAGATTTAGGGC
* *
86042635 TTATGGTTTAAGATTTAGGGT
1 TTATGGTTTTAGATTTAGGGC
*
86042656 TTATAGTTTTA
1 TTATGGTTTTA
86042667 AGACGCTTTA
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.21, C:0.02, G:0.26, T:0.51
Consensus pattern (21 bp):
TTATGGTTTTAGATTTAGGGC
Found at i:86042782 original size:32 final size:30
Alignment explanation
Indices: 86042708--86042784 Score: 75
Period size: 32 Copynumber: 2.5 Consensus size: 30
86042698 AGGTTTACAA
86042708 TTTTATGATTTAGGAATCTATATTTAAGGG
1 TTTTATGATTTAGGAATCTATATTTAAGGG
* * * * *
86042738 TTTAAGGGTTTAGTACTGTCTATAGTTT-AGGG
1 TTTTATGATTTAGGA--ATCTATA-TTTAAGGG
86042770 TTTTATGATTTAGGA
1 TTTTATGATTTAGGA
86042785 TTCAAGGTTT
Statistics
Matches: 35, Mismatches: 9, Indels: 4
0.73 0.19 0.08
Matches are distributed among these distances:
30 11 0.31
32 21 0.60
33 3 0.09
ACGTcount: A:0.26, C:0.04, G:0.23, T:0.47
Consensus pattern (30 bp):
TTTTATGATTTAGGAATCTATATTTAAGGG
Found at i:86042830 original size:21 final size:21
Alignment explanation
Indices: 86042763--86042830 Score: 66
Period size: 21 Copynumber: 3.2 Consensus size: 21
86042753 CTGTCTATAG
* *
86042763 TTTAGGGTTTTATGATTTAGGA
1 TTTAAGGTTTAAT-ATTTAGGA
* *
86042785 TTCAAGGTTTAATATTTAGGG
1 TTTAAGGTTTAATATTTAGGA
*
86042806 TTTAAGGTTT-ATAGTTTATGA
1 TTTAAGGTTTAATA-TTTAGGA
86042827 TTTA
1 TTTA
86042831 CAACTATAGA
Statistics
Matches: 38, Mismatches: 7, Indels: 3
0.79 0.15 0.06
Matches are distributed among these distances:
20 3 0.08
21 25 0.66
22 10 0.26
ACGTcount: A:0.26, C:0.01, G:0.22, T:0.50
Consensus pattern (21 bp):
TTTAAGGTTTAATATTTAGGA
Found at i:86043774 original size:40 final size:40
Alignment explanation
Indices: 86043711--86043794 Score: 114
Period size: 40 Copynumber: 2.1 Consensus size: 40
86043701 CTATAGGTCA
* * * *
86043711 ATCTTTAGCGGCGCTTCCTTAAAAATGTCGCTAATGCTCG
1 ATCTTTAGCGGCGCTTCCATAAAAACGCCGCTAATACTCG
**
86043751 ATCTTTAGCGGCGCTTTGATAAAAACGCCGCTAATACTCG
1 ATCTTTAGCGGCGCTTCCATAAAAACGCCGCTAATACTCG
86043791 ATCT
1 ATCT
86043795 ATTCGATTTT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 38 1.00
ACGTcount: A:0.25, C:0.25, G:0.19, T:0.31
Consensus pattern (40 bp):
ATCTTTAGCGGCGCTTCCATAAAAACGCCGCTAATACTCG
Found at i:86043780 original size:148 final size:148
Alignment explanation
Indices: 86043511--86043785 Score: 327
Period size: 148 Copynumber: 1.9 Consensus size: 148
86043501 CAAACGTCGT
* * * * *
86043511 CGTTCTGTTTAATCTTTTAGCGGCGTTTTTAAGAAAGCGCCGCTATAGATCGACCTATAGGGGCG
1 CGTTCTCTTTAATCTTTTAGCGGCATTTTTAAAAAAGCGCCGCTATAGATCAACCTATAGCGGCG
** * * * * * * ** *** *
86043576 CTTTGTTAAAAATGTTGTTAATGTTGGATCTATTGCGGTGTTTTTCGGGTAGCGCCGCTAATGCC
66 CTTCCTTAAAAATGTCGCTAATGCTCGATCTATTGCGGCGCTTTGAGAAAAACGCCGCTAATGCC
86043641 ACTGAAGCTGAGAAAAAA
131 ACTGAAGCTGAGAAAAAA
* * *
86043659 CGTTCTCTTTAATCTTTTAGCGGCATTTTTAAAAAAGCGCCGCTATAGGTCAATCTTTAGCGGCG
1 CGTTCTCTTTAATCTTTTAGCGGCATTTTTAAAAAAGCGCCGCTATAGATCAACCTATAGCGGCG
*
86043724 CTTCCTTAAAAATGTCGCTAATGCTCGATCT-TTAGCGGCGCTTTGATAAAAACGCCGCTAAT
66 CTTCCTTAAAAATGTCGCTAATGCTCGATCTATT-GCGGCGCTTTGAGAAAAACGCCGCTAAT
86043786 ACTCGATCTA
Statistics
Matches: 103, Mismatches: 23, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
147 2 0.02
148 101 0.98
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.33
Consensus pattern (148 bp):
CGTTCTCTTTAATCTTTTAGCGGCATTTTTAAAAAAGCGCCGCTATAGATCAACCTATAGCGGCG
CTTCCTTAAAAATGTCGCTAATGCTCGATCTATTGCGGCGCTTTGAGAAAAACGCCGCTAATGCC
ACTGAAGCTGAGAAAAAA
Found at i:86044223 original size:41 final size:41
Alignment explanation
Indices: 86044175--86044256 Score: 128
Period size: 41 Copynumber: 2.0 Consensus size: 41
86044165 CTTTGGAATG
**
86044175 CCGAAGAGCCCCCAAAATTAGTCTTTTCCGAATTGGACTCA
1 CCGAAGAGCCCCCAAAATTACCCTTTTCCGAATTGGACTCA
* *
86044216 CCGAAGAGCCCTCAAAATTACCCTTTTTCGAATTGGACTCA
1 CCGAAGAGCCCCCAAAATTACCCTTTTCCGAATTGGACTCA
86044257 ACTTGGGCTC
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 37 1.00
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (41 bp):
CCGAAGAGCCCCCAAAATTACCCTTTTCCGAATTGGACTCA
Found at i:86046078 original size:19 final size:20
Alignment explanation
Indices: 86046038--86046078 Score: 57
Period size: 20 Copynumber: 2.1 Consensus size: 20
86046028 AATAGGGATC
* *
86046038 ACACGCCCGTGTGGCTTAGG
1 ACACACCCGTGTGGCGTAGG
86046058 ACACACCCGTGTGG-GTAGG
1 ACACACCCGTGTGGCGTAGG
86046077 AC
1 AC
86046079 GTATGGTCGC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
19 6 0.32
20 13 0.68
ACGTcount: A:0.20, C:0.29, G:0.34, T:0.17
Consensus pattern (20 bp):
ACACACCCGTGTGGCGTAGG
Found at i:86051712 original size:50 final size:47
Alignment explanation
Indices: 86051651--86051880 Score: 203
Period size: 50 Copynumber: 4.7 Consensus size: 47
86051641 ACATCAAAGT
*
86051651 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATACTGAGAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCT--CAT-CTGAGAC
* * * *
86051701 TGATGCCATGTCCCAAACATGGTCTTACACTGGCTCTCATCTGTCGATGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTG-AGA--C
* * * * *
86051751 CGATACCATGTCCCAGACATGGCCTTACACAAGCTTTCAAGTCTCGAGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTC-A-TCT-GAGAC
* * * * * * *
86051801 CAATGCCATGTCCCAGACATGGTTTTACACTGGGTCTCATAATGTGGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCAT-CTGAGAC
86051849 CGATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTAGC
86051881 ACACATATCA
Statistics
Matches: 147, Mismatches: 26, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
46 10 0.07
47 17 0.12
48 14 0.10
49 2 0.01
50 98 0.67
51 1 0.01
52 4 0.03
53 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (47 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTAGCTCTCATCTGAGAC
Found at i:86051807 original size:100 final size:97
Alignment explanation
Indices: 86051651--86051876 Score: 253
Period size: 100 Copynumber: 2.3 Consensus size: 97
86051641 ACATCAAAGT
* * **
86051651 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCACATACTGAGACTGATGCCATGTCCCA
1 CGAT-CCATGTCCCAGACATGGTCTTACACAAGCTCTCACATACTGAGACCAATGCCATGTCCCA
*
86051716 AACATGGTCTTACACTGGCTCTCAT-CTGTCGATGC
65 AACATGGTCTTACACTGGCTCTCATAATGT-G--GC
* * *
86051751 CGATACCATGTCCCAGACATGGCCTTACACAAGCTTTCA-AGT-CTCGAGGCCAATGCCATGTCC
1 CGAT-CCATGTCCCAGACATGGTCTTACACAAGCTCTCACA-TACT-GAGACCAATGCCATGTCC
* * *
86051814 CAGACATGGTTTTACACTGGGTCTCATAATGTGGC
63 CAAACATGGTCTTACACTGGCTCTCATAATGTGGC
*
86051849 CGATGCATGTCCCAGACAT-GTCTTACAC
1 CGATCCATGTCCCAGACATGGTCTTACAC
86051877 TAGCACACAT
Statistics
Matches: 109, Mismatches: 14, Indels: 10
0.82 0.11 0.08
Matches are distributed among these distances:
96 8 0.07
97 14 0.13
98 6 0.06
99 3 0.03
100 75 0.69
101 3 0.03
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (97 bp):
CGATCCATGTCCCAGACATGGTCTTACACAAGCTCTCACATACTGAGACCAATGCCATGTCCCAA
ACATGGTCTTACACTGGCTCTCATAATGTGGC
Found at i:86057055 original size:43 final size:43
Alignment explanation
Indices: 86056983--86057087 Score: 129
Period size: 43 Copynumber: 2.4 Consensus size: 43
86056973 TATATGAGAC
* * * * *
86056983 ATGTGATTACGTGAAAGGCCACGTTTGGGACGTTGGCATCGAT
1 ATGTGATTACGTGTAAGACAACGTCTGGGACGTTGGCATCAAT
*
86057026 ATGTGATTACGTGTAAGACAACGTCTGGGATGTTGGCATCAAT
1 ATGTGATTACGTGTAAGACAACGTCTGGGACGTTGGCATCAAT
* * *
86057069 ATGTGTTTAAGAGTAAGAC
1 ATGTGATTACGTGTAAGAC
86057088 CCTGTGCTAT
Statistics
Matches: 53, Mismatches: 9, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
43 53 1.00
ACGTcount: A:0.28, C:0.13, G:0.30, T:0.30
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACAACGTCTGGGACGTTGGCATCAAT
Found at i:86064046 original size:22 final size:23
Alignment explanation
Indices: 86063969--86064080 Score: 115
Period size: 24 Copynumber: 4.8 Consensus size: 23
86063959 AGACATGGCG
*
86063969 AGTAAGCTCT-TCATGAGTTGATAAC
1 AGTAAGCTCTAT--TGAGCTGA-AAC
86063994 AGTAAGCTCTATTGAGCTGAAAAC
1 AGTAAGCTCTATTGAGCTG-AAAC
* *
86064018 AGTAAGCTCTATTGTGCTG-AAT
1 AGTAAGCTCTATTGAGCTGAAAC
86064040 AGTAAGCTCT-TTCGAGCTGAAAC
1 AGTAAGCTCTATT-GAGCTGAAAC
86064063 AGTAAGCTC-ATATGAGCT
1 AGTAAGCTCTAT-TGAGCT
86064081 ATGGTGAGTC
Statistics
Matches: 76, Mismatches: 5, Indels: 14
0.80 0.05 0.15
Matches are distributed among these distances:
21 2 0.03
22 17 0.22
23 17 0.22
24 28 0.37
25 11 0.14
26 1 0.01
ACGTcount: A:0.32, C:0.17, G:0.21, T:0.29
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGCTGAAAC
Found at i:86068152 original size:28 final size:28
Alignment explanation
Indices: 86068112--86068169 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
86068102 TATATCAGAG
86068112 TTGTTCTCGGTATTAACTCAATACCCAA
1 TTGTTCTCGGTATTAACTCAATACCCAA
86068140 TTGTTCTCGGTATTAACTCAATACCCAA
1 TTGTTCTCGGTATTAACTCAATACCCAA
86068168 TT
1 TT
86068170 TGACTTCTCT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.28, C:0.24, G:0.10, T:0.38
Consensus pattern (28 bp):
TTGTTCTCGGTATTAACTCAATACCCAA
Found at i:86071476 original size:23 final size:24
Alignment explanation
Indices: 86071446--86071499 Score: 74
Period size: 23 Copynumber: 2.3 Consensus size: 24
86071436 CTGATAACAG
86071446 TAAGCTCTATTAAGCT-AAAACGA
1 TAAGCTCTATTAAGCTGAAAACGA
* * *
86071469 TAAGCTCTATTGAGCTGAAAATGG
1 TAAGCTCTATTAAGCTGAAAACGA
86071493 TAAGCTC
1 TAAGCTC
86071500 GTCCGAGCTG
Statistics
Matches: 27, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
23 15 0.56
24 12 0.44
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.28
Consensus pattern (24 bp):
TAAGCTCTATTAAGCTGAAAACGA
Found at i:86074377 original size:27 final size:27
Alignment explanation
Indices: 86074339--86074420 Score: 164
Period size: 27 Copynumber: 3.0 Consensus size: 27
86074329 TTCTCATTAG
86074339 CTTAAATTTAAAACTCTCACCGTTGAA
1 CTTAAATTTAAAACTCTCACCGTTGAA
86074366 CTTAAATTTAAAACTCTCACCGTTGAA
1 CTTAAATTTAAAACTCTCACCGTTGAA
86074393 CTTAAATTTAAAACTCTCACCGTTGAA
1 CTTAAATTTAAAACTCTCACCGTTGAA
86074420 C
1 C
86074421 CATTCGAAAC
Statistics
Matches: 55, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (27 bp):
CTTAAATTTAAAACTCTCACCGTTGAA
Found at i:86077556 original size:2 final size:2
Alignment explanation
Indices: 86077549--86077578 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
86077539 CCAGAGATAA
86077549 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
1 AG AG AG AG AG AG AG AG AG AG AG AG AG AG AG
86077579 TCATGAGTAC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.50, T:0.00
Consensus pattern (2 bp):
AG
Found at i:86082143 original size:29 final size:28
Alignment explanation
Indices: 86082087--86082201 Score: 131
Period size: 29 Copynumber: 4.0 Consensus size: 28
86082077 GTGGGCATGA
* * *
86082087 ATATGAATGTGACTGGACCTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
86082115 ATATAAATGTGATATGGGCCTAATGGGCC
1 ATATAAATGTGAT-TGGGCCTAATGGGCC
* * *
86082144 ATATACAGGTAATTTGGGCCTAATGGGCC
1 ATATAAATGTGA-TTGGGCCTAATGGGCC
* * *
86082173 ATATGAATATGATTGGGCTTAATGGGCC
1 ATATAAATGTGATTGGGCCTAATGGGCC
86082201 A
1 A
86082202 GATACAGGTA
Statistics
Matches: 73, Mismatches: 12, Indels: 4
0.82 0.13 0.04
Matches are distributed among these distances:
28 27 0.37
29 45 0.62
30 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (28 bp):
ATATAAATGTGATTGGGCCTAATGGGCC
Found at i:86107716 original size:39 final size:39
Alignment explanation
Indices: 86107599--86107861 Score: 302
Period size: 40 Copynumber: 6.6 Consensus size: 39
86107589 GCTCCTCATT
* *
86107599 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
86107639 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
86107679 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86107718 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
86107757 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGAATTAGTATCTCGCA
* * * *
86107797 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCATTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATCTCGCA
86107838 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
86107862 CATCATTCAA
Statistics
Matches: 203, Mismatches: 14, Indels: 13
0.88 0.06 0.06
Matches are distributed among these distances:
39 93 0.46
40 99 0.49
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:86107845 original size:79 final size:78
Alignment explanation
Indices: 86107599--86107861 Score: 293
Period size: 79 Copynumber: 3.3 Consensus size: 78
86107589 GCTCCTCATT
* * *
86107599 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGACTTAACCC
1 CAAATGCCTTC-GGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCC
* * *
86107662 GGATTTAGTAACTCGCA
62 GGAATTAGTATCTAGCA
*
86107679 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
1 CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
*
86107744 TTAGTATCTCGCA
66 TTAGTATCTAGCA
* * * *
86107757 CAAATGCCTTCGGATCTTAGTCCGGATTTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGA-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG-GCTTAGCCCGG
*
86107822 ATATT-GTCATTTAGCA
64 A-ATTAGT-ATCTAGCA
86107838 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTC-GGACTTAGCCCGGA
86107862 CATCATTCAA
Statistics
Matches: 162, Mismatches: 14, Indels: 15
0.85 0.07 0.08
Matches are distributed among these distances:
78 37 0.23
79 86 0.53
80 29 0.18
81 10 0.06
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGGCTTAGCCCGGAA
TTAGTATCTAGCA
Found at i:86115750 original size:39 final size:39
Alignment explanation
Indices: 86115633--86116596 Score: 1733
Period size: 39 Copynumber: 24.6 Consensus size: 39
86115623 GCTCCTCGTT
* *
86115633 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
86115673 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
86115713 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86115752 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86115791 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86115830 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86115869 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86115908 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86115947 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86115986 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116025 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116064 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116103 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116142 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116181 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116220 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116259 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116298 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116337 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116376 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116415 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116454 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
86116493 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
86116532 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
86116573 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
86116597 CATCATTCAA
Statistics
Matches: 906, Mismatches: 11, Indels: 15
0.97 0.01 0.02
Matches are distributed among these distances:
39 834 0.92
40 61 0.07
41 11 0.01
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:86117693 original size:13 final size:13
Alignment explanation
Indices: 86117675--86117699 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
86117665 GGATGAGCAT
86117675 TTTTTTTTCTTTG
1 TTTTTTTTCTTTG
86117688 TTTTTTTTCTTT
1 TTTTTTTTCTTT
86117700 CTAGTTTCGG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.00, C:0.08, G:0.04, T:0.88
Consensus pattern (13 bp):
TTTTTTTTCTTTG
Found at i:86119927 original size:34 final size:34
Alignment explanation
Indices: 86119851--86119927 Score: 111
Period size: 34 Copynumber: 2.3 Consensus size: 34
86119841 TTTGTTTGCA
* *
86119851 TACTGTT-CTGAAATGGGCTAAGGCCTAGACTGC
1 TACTGTTACTGAAATGGGCTAAGGCCCAGACTAC
* *
86119884 CACTATTACTGAAATGGGCTAAGGCCCAGACTAC
1 TACTGTTACTGAAATGGGCTAAGGCCCAGACTAC
86119918 TACTGTTACT
1 TACTGTTACT
86119928 AAAAAAAGGG
Statistics
Matches: 37, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
33 5 0.14
34 32 0.86
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.27
Consensus pattern (34 bp):
TACTGTTACTGAAATGGGCTAAGGCCCAGACTAC
Found at i:86127192 original size:27 final size:27
Alignment explanation
Indices: 86127162--86127339 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86127152 ATATTGAGCC
* * * *
86127162 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86127189 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86127216 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86127244 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86127271 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86127298 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86127325 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86127340 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86127301 original size:82 final size:81
Alignment explanation
Indices: 86127183--86127338 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86127173 TGCTATATAA
* *
86127183 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86127248 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86127265 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86127329 CACTTAGTGC
65 CACTTAGTGC
86127339 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86128870 original size:23 final size:24
Alignment explanation
Indices: 86128839--86128884 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
86128829 TCCTCCTTTA
86128839 TTTTATTCA-TCCTTTT-TTTTCT
1 TTTTATTCACTCCTTTTATTTTCT
*
86128861 TTTTAATTCACTTCTTTTATTTTC
1 TTTT-ATTCACTCCTTTTATTTTC
86128885 CAATCCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 5 0.25
24 6 0.30
25 5 0.25
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTATTCACTCCTTTTATTTTCT
Found at i:86133822 original size:41 final size:41
Alignment explanation
Indices: 86133777--86133861 Score: 170
Period size: 41 Copynumber: 2.1 Consensus size: 41
86133767 TTCGCAGATG
86133777 ACTGAGGTTCAACAGGCGGCGTCCCTTGTGCAGGAGCAGCC
1 ACTGAGGTTCAACAGGCGGCGTCCCTTGTGCAGGAGCAGCC
86133818 ACTGAGGTTCAACAGGCGGCGTCCCTTGTGCAGGAGCAGCC
1 ACTGAGGTTCAACAGGCGGCGTCCCTTGTGCAGGAGCAGCC
86133859 ACT
1 ACT
86133862 ACGCTCTCAA
Statistics
Matches: 44, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
41 44 1.00
ACGTcount: A:0.20, C:0.29, G:0.33, T:0.18
Consensus pattern (41 bp):
ACTGAGGTTCAACAGGCGGCGTCCCTTGTGCAGGAGCAGCC
Found at i:86135425 original size:27 final size:27
Alignment explanation
Indices: 86135395--86135572 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
86135385 ATATTGAGCC
* * * *
86135395 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
86135422 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86135449 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
86135477 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
86135504 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
86135531 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
86135558 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86135573 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:86135534 original size:82 final size:81
Alignment explanation
Indices: 86135416--86135571 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
86135406 TGCTATATAA
* *
86135416 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
86135481 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
86135498 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
86135562 CACTTAGTGC
65 CACTTAGTGC
86135572 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:86137103 original size:23 final size:24
Alignment explanation
Indices: 86137072--86137117 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
86137062 TCCTCCCTTA
86137072 TTTTATTCA-TCCTTTT-TTTTCT
1 TTTTATTCACTCCTTTTATTTTCT
*
86137094 TTTTAATTCACTTCTTTTATTTTC
1 TTTT-ATTCACTCCTTTTATTTTC
86137118 CAATCCACTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
22 4 0.20
23 5 0.25
24 6 0.30
25 5 0.25
ACGTcount: A:0.13, C:0.17, G:0.00, T:0.70
Consensus pattern (24 bp):
TTTTATTCACTCCTTTTATTTTCT
Found at i:86143198 original size:27 final size:27
Alignment explanation
Indices: 86143142--86143252 Score: 154
Period size: 27 Copynumber: 4.1 Consensus size: 27
86143132 AGCATGGCTG
* *
86143142 CCAGAACAGATAA-TGTGACAGAGTCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
*
86143168 CCAGAACAGATAATTGTAGCAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
86143195 CCAGAACAGAT-ATATGTGGCAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* *
86143222 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
86143249 CCAG
1 CCAG
86143253 GACGTTTCCT
Statistics
Matches: 76, Mismatches: 6, Indels: 5
0.87 0.07 0.06
Matches are distributed among these distances:
26 15 0.20
27 59 0.78
28 2 0.03
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:86143690 original size:16 final size:16
Alignment explanation
Indices: 86143669--86143707 Score: 78
Period size: 16 Copynumber: 2.4 Consensus size: 16
86143659 CAAAATATCA
86143669 GCTTTTCGGCATTTCG
1 GCTTTTCGGCATTTCG
86143685 GCTTTTCGGCATTTCG
1 GCTTTTCGGCATTTCG
86143701 GCTTTTC
1 GCTTTTC
86143708 AGCTTTTACC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.05, C:0.26, G:0.23, T:0.46
Consensus pattern (16 bp):
GCTTTTCGGCATTTCG
Found at i:86143712 original size:8 final size:8
Alignment explanation
Indices: 86143669--86143714 Score: 65
Period size: 8 Copynumber: 5.8 Consensus size: 8
86143659 CAAAATATCA
86143669 GCTTTTCG
1 GCTTTTCG
*
86143677 GCATTTCG
1 GCTTTTCG
86143685 GCTTTTCG
1 GCTTTTCG
*
86143693 GCATTTCG
1 GCTTTTCG
*
86143701 GCTTTTCA
1 GCTTTTCG
86143709 GCTTTT
1 GCTTTT
86143715 ACCGATCTAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
8 33 1.00
ACGTcount: A:0.07, C:0.24, G:0.22, T:0.48
Consensus pattern (8 bp):
GCTTTTCG
Found at i:86148409 original size:21 final size:22
Alignment explanation
Indices: 86148356--86148409 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 22
86148346 TATTTTACGT
86148356 AAAAGAAAGGAAATAATAAAAGA
1 AAAAGAAAGG-AATAATAAAAGA
* **
86148379 AATACTAAGG-ATAATAAAAGA
1 AAAAGAAAGGAATAATAAAAGA
86148400 AAAAGAAAGG
1 AAAAGAAAGG
86148410 GGTTATTACC
Statistics
Matches: 25, Mismatches: 6, Indels: 2
0.76 0.18 0.06
Matches are distributed among these distances:
21 18 0.72
23 7 0.28
ACGTcount: A:0.69, C:0.02, G:0.19, T:0.11
Consensus pattern (22 bp):
AAAAGAAAGGAATAATAAAAGA
Found at i:86149920 original size:28 final size:28
Alignment explanation
Indices: 86149855--86150005 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
86149845 GAGATTGGCG
* * * *
86149855 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
86149884 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86149912 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86149940 CTAAGTGCGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
86149968 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
86149995 CTGAGTGTGCG
1 CTAAGTGTGCG
86150006 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.65
29 15 0.13
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:86155578 original size:26 final size:27
Alignment explanation
Indices: 86155542--86155594 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86155532 TGTCAGCTAG
* *
86155542 TGAAATTTTAA-TGTTCGAATGTATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
*
86155568 TGAATTTTTAAGTGTCCGAATGCATGC
1 TGAAATTTTAAGTGTCCGAATGCATGC
86155595 CAGAATTCAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.28, C:0.11, G:0.21, T:0.40
Consensus pattern (27 bp):
TGAAATTTTAAGTGTCCGAATGCATGC
Found at i:86170493 original size:45 final size:45
Alignment explanation
Indices: 86170429--86170630 Score: 288
Period size: 45 Copynumber: 4.6 Consensus size: 45
86170419 NNNNNNNNNN
*
86170429 GCCTAGCAGGCTATGATGCCGGTGAAATACTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCCTTTGA
* * *
86170474 GCCTAGCAGGCTATGATGCCGGTGAGATATTATTCGGGCCTTTGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCCTTTGA
*
86170519 GCCTAGCAGGCTATAATGCCGGTGAGATACTATTCGGG-CTTTCGA
1 GCCTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCCTTT-GA
*
86170564 GCCTAGCAGGCTATAATGCCGGTGAAATGA-TA-TCGGGCC-TCGA
1 GCCTAGCAGGCTATAATGCCGGTGAAAT-ACTATTCGGGCCTTTGA
*
86170607 GCCTAGCAGGCGA-AATGCCGGTGA
1 GCCTAGCAGGCTATAATGCCGGTGA
86170631 TTAGAGAAAA
Statistics
Matches: 147, Mismatches: 7, Indels: 9
0.90 0.04 0.06
Matches are distributed among these distances:
42 11 0.07
43 14 0.10
44 10 0.07
45 111 0.76
46 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.31, T:0.24
Consensus pattern (45 bp):
GCCTAGCAGGCTATAATGCCGGTGAAATACTATTCGGGCCTTTGA
Found at i:86173658 original size:15 final size:15
Alignment explanation
Indices: 86173638--86173702 Score: 73
Period size: 15 Copynumber: 4.4 Consensus size: 15
86173628 GTATCTTGGG
86173638 TTTCTTTATTCTGGA
1 TTTCTTTATTCTGGA
*
86173653 TTTCTTTATTCTGGG
1 TTTCTTTATTCTGGA
86173668 TTT-TTCTA-TCTTGGA
1 TTTCTT-TATTC-TGGA
*
86173683 TTTCTTTATTC-GGT
1 TTTCTTTATTCTGGA
86173697 TTTCTT
1 TTTCTT
86173703 GTTATCTTTA
Statistics
Matches: 43, Mismatches: 3, Indels: 9
0.78 0.05 0.16
Matches are distributed among these distances:
14 12 0.28
15 27 0.63
16 4 0.09
ACGTcount: A:0.09, C:0.14, G:0.14, T:0.63
Consensus pattern (15 bp):
TTTCTTTATTCTGGA
Found at i:86173670 original size:30 final size:31
Alignment explanation
Indices: 86173634--86173702 Score: 92
Period size: 30 Copynumber: 2.3 Consensus size: 31
86173624 TATCGTATCT
86173634 TGGGTTTCTT-TAT-TCTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCT-TGGATTTCTTTATTC
86173664 TGGGTTT-TTCTATCTTGGATTTCTTTATTC
1 TGGGTTTCTTCTATCTTGGATTTCTTTATTC
*
86173694 -GGTTTTCTT
1 TGGGTTTCTT
86173703 GTTATCTTTA
Statistics
Matches: 35, Mismatches: 1, Indels: 6
0.83 0.02 0.14
Matches are distributed among these distances:
29 7 0.20
30 27 0.77
31 1 0.03
ACGTcount: A:0.09, C:0.13, G:0.17, T:0.61
Consensus pattern (31 bp):
TGGGTTTCTTCTATCTTGGATTTCTTTATTC
Found at i:86175122 original size:49 final size:50
Alignment explanation
Indices: 86175001--86175136 Score: 186
Period size: 49 Copynumber: 2.7 Consensus size: 50
86174991 AGCAAAAGGG
** *
86175001 GTGTAGTACTAAGTGCAGGCTACTATGTGTATTAGATGGTGAGGTCACGT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTGAGGTCACAT
* * *
86175051 GTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGACT-GT-TGGTCGCAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TGGTGAGGTCACAT
*
86175100 GTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGAT
1 GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGAT
86175137 AGCTTCGGCT
Statistics
Matches: 77, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
48 1 0.01
49 40 0.52
50 35 0.45
51 1 0.01
ACGTcount: A:0.24, C:0.17, G:0.29, T:0.29
Consensus pattern (50 bp):
GTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATGGTGAGGTCACAT
Found at i:86177701 original size:49 final size:49
Alignment explanation
Indices: 86177581--86177707 Score: 134
Period size: 49 Copynumber: 2.6 Consensus size: 49
86177571 TGGTTTTTGA
* *
86177581 AAATA-TTTTTTAT-TTAATTGTTTTCAAATCTAATGTTTTAAATAAATAT
1 AAATATTTTTTTATATTATTTG-TTT-AGATCTAATGTTTTAAATAAATAT
* * * * *
86177630 AAAAATTTATTTA-ATTTTTTTGTTTAGATCTAGTGTTTTACATAAATAT
1 AAATATTTTTTTATA-TTATTTGTTTAGATCTAATGTTTTAAATAAATAT
*
86177679 AAATATTTTTTTATATTATTTGTTCAGAT
1 AAATATTTTTTTATATTATTTGTTTAGAT
86177708 ATTGCATTTA
Statistics
Matches: 63, Mismatches: 11, Indels: 8
0.77 0.13 0.10
Matches are distributed among these distances:
49 48 0.76
50 10 0.16
51 5 0.08
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.54
Consensus pattern (49 bp):
AAATATTTTTTTATATTATTTGTTTAGATCTAATGTTTTAAATAAATAT
Found at i:86181905 original size:47 final size:47
Alignment explanation
Indices: 86181854--86182172 Score: 523
Period size: 47 Copynumber: 6.7 Consensus size: 47
86181844 TTAGGATTCT
* * *
86181854 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
86181901 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
86181948 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
86181997 ATGTGATGAATGTGAAAGTTTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
86182044 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* *
86182091 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
86182138 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
86182173 TCCCGAAGGG
Statistics
Matches: 259, Mismatches: 10, Indels: 6
0.94 0.04 0.02
Matches are distributed among these distances:
46 1 0.00
47 212 0.82
49 46 0.18
ACGTcount: A:0.33, C:0.08, G:0.29, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:86184957 original size:24 final size:24
Alignment explanation
Indices: 86184928--86185034 Score: 144
Period size: 24 Copynumber: 4.5 Consensus size: 24
86184918 AGGAAATTCA
*
86184928 CACACATAGTGCCATGC-TATCCTG
1 CACACATAGTGCCATGCAAATCC-G
* *
86184952 CACACATAGTGCCTTGCTAATCCG
1 CACACATAGTGCCATGCAAATCCG
* *
86184976 CACACGTAGTGCCATTCAAATCCG
1 CACACATAGTGCCATGCAAATCCG
*
86185000 CACACATAGTGCCATTCAAATCCG
1 CACACATAGTGCCATGCAAATCCG
86185024 CACACATAGTG
1 CACACATAGTG
86185035 TCAATGTCAT
Statistics
Matches: 75, Mismatches: 7, Indels: 2
0.89 0.08 0.02
Matches are distributed among these distances:
24 71 0.95
25 4 0.05
ACGTcount: A:0.29, C:0.33, G:0.16, T:0.22
Consensus pattern (24 bp):
CACACATAGTGCCATGCAAATCCG
Found at i:86186349 original size:17 final size:17
Alignment explanation
Indices: 86186327--86186360 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
86186317 CCCCACTTAA
*
86186327 TATATTATAACTTATTT
1 TATATTATAACATATTT
86186344 TATATTATAACATATTT
1 TATATTATAACATATTT
86186361 CAATTATATA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.38, C:0.06, G:0.00, T:0.56
Consensus pattern (17 bp):
TATATTATAACATATTT
Found at i:86187467 original size:15 final size:16
Alignment explanation
Indices: 86187435--86187468 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
86187425 ATTTCATCTC
*
86187435 ATTTGCATTTAGGTTA
1 ATTTGAATTTAGGTTA
86187451 ATTTGAATTTA-GTTA
1 ATTTGAATTTAGGTTA
86187466 ATT
1 ATT
86187469 AATTTAATTT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.29, C:0.03, G:0.15, T:0.53
Consensus pattern (16 bp):
ATTTGAATTTAGGTTA
Found at i:86188652 original size:18 final size:20
Alignment explanation
Indices: 86188629--86188669 Score: 59
Period size: 20 Copynumber: 2.1 Consensus size: 20
86188619 TTGAATGATT
*
86188629 TTTGATGA-A-ATTTTAAAG
1 TTTGATGATATATATTAAAG
86188647 TTTGATGATATATATTAAAG
1 TTTGATGATATATATTAAAG
86188667 TTT
1 TTT
86188670 TATTAAGTGA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
18 8 0.40
19 1 0.05
20 11 0.55
ACGTcount: A:0.37, C:0.00, G:0.15, T:0.49
Consensus pattern (20 bp):
TTTGATGATATATATTAAAG
Found at i:86189316 original size:43 final size:43
Alignment explanation
Indices: 86189227--86189341 Score: 135
Period size: 43 Copynumber: 2.7 Consensus size: 43
86189217 TGTGATTACA
** * *
86189227 TGTAAGACCATGTCTGAAACATTGGCATTGTATTATGAATACG
1 TGTAAGACCATGTCTGGGACATTGGCATCGTATTACGAATACG
*
86189270 TGTAAGACCATGTCTGGGACATTGGCATCGTTATT-CGATTTA-G
1 TGTAAGACCATGTCTGGGACATTGGCATCG-TATTACGA-ATACG
* *
86189313 TGTAAGACCTTGTCTGGGACAGTGGCATC
1 TGTAAGACCATGTCTGGGACATTGGCATC
86189342 AATATGTGAT
Statistics
Matches: 63, Mismatches: 7, Indels: 4
0.85 0.09 0.05
Matches are distributed among these distances:
43 57 0.90
44 6 0.10
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCGTATTACGAATACG
Found at i:86192878 original size:20 final size:20
Alignment explanation
Indices: 86192853--86192899 Score: 94
Period size: 20 Copynumber: 2.4 Consensus size: 20
86192843 ATTCTGATAT
86192853 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86192873 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
86192893 ACATGAT
1 ACATGAT
86192900 GTATTCATAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 27 1.00
ACGTcount: A:0.36, C:0.11, G:0.19, T:0.34
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:86193007 original size:25 final size:25
Alignment explanation
Indices: 86192947--86193030 Score: 118
Period size: 26 Copynumber: 3.4 Consensus size: 25
86192937 AGGAAGTGGA
*
86192947 AAAAGGGCTTTTGCCCCAGTTTACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
86192972 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
86192998 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
86193021 AAAAGAGGCT
1 AAAAG-GGCT
86193031 AGGCCTCCAG
Statistics
Matches: 54, Mismatches: 2, Indels: 5
0.89 0.03 0.08
Matches are distributed among these distances:
23 9 0.17
24 13 0.24
25 8 0.15
26 24 0.44
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:86193276 original size:31 final size:31
Alignment explanation
Indices: 86193238--86193328 Score: 103
Period size: 38 Copynumber: 2.7 Consensus size: 31
86193228 CGTTTACAGT
86193238 AAAGGCTTCAGCCCAGTAATATGAAATATGA
1 AAAGGCTTCAGCCCAGTAATATGAAATATGA
*
86193269 AAAGGCTTCTGCCCAGTGTTATGAAATATGAAATATGA
1 AAAGGCTTCAGCCCA--G---T--AATATGAAATATGA
86193307 AAAGGCTTCAGCCCAGT-ATATG
1 AAAGGCTTCAGCCCAGTAATATG
86193329 CTGAAATTGA
Statistics
Matches: 51, Mismatches: 2, Indels: 15
0.75 0.03 0.22
Matches are distributed among these distances:
30 5 0.10
31 14 0.27
33 2 0.04
36 2 0.04
38 28 0.55
ACGTcount: A:0.37, C:0.16, G:0.21, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTAATATGAAATATGA
Found at i:86195626 original size:14 final size:14
Alignment explanation
Indices: 86195607--86195640 Score: 59
Period size: 14 Copynumber: 2.4 Consensus size: 14
86195597 GAGAGGTCAT
86195607 GGGCAAGGTAGAGG
1 GGGCAAGGTAGAGG
86195621 GGGCAAGGTAGAGG
1 GGGCAAGGTAGAGG
*
86195635 TGGCAA
1 GGGCAA
86195641 TGGAAATGGA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.29, C:0.09, G:0.53, T:0.09
Consensus pattern (14 bp):
GGGCAAGGTAGAGG
Found at i:86199222 original size:40 final size:40
Alignment explanation
Indices: 86199143--86199319 Score: 225
Period size: 40 Copynumber: 4.5 Consensus size: 40
86199133 ACCCAAGCAT
* * * *
86199143 CTTCGGGATTTAG-CCGAATATAACT-ACTTGCTCAAATGC
1 CTTCGGGACTTAGCCCGGATAT-AGTAACTTGCACAAATGC
*
86199182 CTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
*
86199222 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
* * * *
86199262 TTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTTGCACAAATGC
86199302 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
86199320 TTATCATCCA
Statistics
Matches: 122, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 17 0.14
40 104 0.85
41 1 0.01
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
Found at i:86200140 original size:233 final size:233
Alignment explanation
Indices: 86199733--86200194 Score: 915
Period size: 233 Copynumber: 2.0 Consensus size: 233
86199723 AATGAAGGGG
86199733 GCAACCACACACATTTTTTTTTGTTTCTCCTCCTACTAACACTAATATTTTATTGCCCATGTTCT
1 GCAACCACACACATTTTTTTTTGTTTCTCCTCCTACTAACACTAATATTTTATTGCCCATGTTCT
86199798 TTATTTTATTATTCCTAACATAAGCATTAACATAACATGTTTATGACATGTTTTGCCCATAAGAT
66 TTATTTTATTATTCCTAACATAAGCATTAACATAACATGTTTATGACATGTTTTGCCCATAAGAT
86199863 TTTGTCCACCCTCCTTGTCATGGCCGGCCACTTACTAATTAAGGGGGAAATTGACATGCAAGTCC
131 TTTGTCCACCCTCCTTGTCATGGCCGGCCACTTACTAATTAAGGGGGAAATTGACATGCAAGTCC
86199928 ACCCTTTTGATCTCATGCACTAATAGGTCCTTATGGGA
196 ACCCTTTTGATCTCATGCACTAATAGGTCCTTATGGGA
*
86199966 GCAACCACACACTTTTTTTTTTGTTTCTCCTCCTACTAACACTAATATTTTATTGCCCATGTTCT
1 GCAACCACACACATTTTTTTTTGTTTCTCCTCCTACTAACACTAATATTTTATTGCCCATGTTCT
86200031 TTATTTTATTATTCCTAACATAAGCATTAACATAACATGTTTATGACATGTTTTGCCCATAAGAT
66 TTATTTTATTATTCCTAACATAAGCATTAACATAACATGTTTATGACATGTTTTGCCCATAAGAT
86200096 TTTGTCCACCCTCCTTGTCATGGCCGGCCACTTACTAATTAAGGGGGAAATTGACATGCAAGTCC
131 TTTGTCCACCCTCCTTGTCATGGCCGGCCACTTACTAATTAAGGGGGAAATTGACATGCAAGTCC
86200161 ACCCTTTTGATCTCATGCACTAATAGGTCCTTAT
196 ACCCTTTTGATCTCATGCACTAATAGGTCCTTAT
86200195 AGATCGACCT
Statistics
Matches: 228, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
233 228 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (233 bp):
GCAACCACACACATTTTTTTTTGTTTCTCCTCCTACTAACACTAATATTTTATTGCCCATGTTCT
TTATTTTATTATTCCTAACATAAGCATTAACATAACATGTTTATGACATGTTTTGCCCATAAGAT
TTTGTCCACCCTCCTTGTCATGGCCGGCCACTTACTAATTAAGGGGGAAATTGACATGCAAGTCC
ACCCTTTTGATCTCATGCACTAATAGGTCCTTATGGGA
Found at i:86206631 original size:40 final size:40
Alignment explanation
Indices: 86206552--86206767 Score: 303
Period size: 40 Copynumber: 5.4 Consensus size: 40
86206542 ACCCAAGCAT
* * * *
86206552 CTTCGGGATTTAG-CCGAATATAAGT-ACTTGCTCAAATGC
1 CTTCGGGACTTAGCCCGGATAT-AGTAACTCGCACAAATGC
* *
86206591 CTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
86206631 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
86206671 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * *
86206711 TTTCGGGACTTAGCCCGGA-ATTAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
*
86206751 CTTCAGGACTTAGCCCG
1 CTTCGGGACTTAGCCCG
86206768 ATTATCATCC
Statistics
Matches: 163, Mismatches: 11, Indels: 5
0.91 0.06 0.03
Matches are distributed among these distances:
39 16 0.10
40 147 0.90
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:86213895 original size:40 final size:40
Alignment explanation
Indices: 86213769--86213943 Score: 223
Period size: 40 Copynumber: 4.5 Consensus size: 40
86213759 ACCCAAGCAT
* * * * *
86213769 CTTCGGGATTTAG-CCGAATATACT-ACTTGCTCAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* *
86213807 CTTCAGGACTTAGCCCGGTTATAGTAACTCGCA-AAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
86213846 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
* * *
86213886 CTTCGGGACTTAGCCC-GAAATTAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATGC
86213926 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
86213944 TTATCATCCG
Statistics
Matches: 120, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
38 11 0.09
39 48 0.40
40 60 0.50
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGC
Found at i:86213898 original size:79 final size:79
Alignment explanation
Indices: 86213769--86213943 Score: 221
Period size: 79 Copynumber: 2.2 Consensus size: 79
86213759 ACCCAAGCAT
* * * * **
86213769 CTTCGGGATTTAG-CCGAATATACTACTTGCTCAAATGCCTTCAGGACTTAGCCCG-GTTATAGT
1 CTTCGGGACTTAGCCCGGATATACTACTCGCACAAATGCCTTCAGGACTTAGCCCGAAAT-TAGT
*
86213832 AACTCGCA-AAATGC
65 AACTAGCACAAATGC
* *
86213846 CTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAAATTAGT
1 CTTCGGGACTTAGCCCGGATATACT-ACTCGCACAAATGCCTTCAGGACTTAGCCCGAAATTAGT
*
86213911 CACTAGCACAAATGC
65 AACTAGCACAAATGC
86213926 CTTCGGGACTTAGCCCGG
1 CTTCGGGACTTAGCCCGG
86213944 TTATCATCCG
Statistics
Matches: 84, Mismatches: 10, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
77 12 0.14
78 9 0.11
79 38 0.45
80 25 0.30
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (79 bp):
CTTCGGGACTTAGCCCGGATATACTACTCGCACAAATGCCTTCAGGACTTAGCCCGAAATTAGTA
ACTAGCACAAATGC
Found at i:86217963 original size:24 final size:25
Alignment explanation
Indices: 86217896--86217979 Score: 100
Period size: 26 Copynumber: 3.4 Consensus size: 25
86217886 AGGAAGTGCA
* * *
86217896 AAAAAGGCTTTTGCCCCAGTATACC
1 AAAAGGGCTTTTGCCCCAGTTTATC
86217921 GAAAAGGGCTTTTGCCCCAGTTTATC
1 -AAAAGGGCTTTTGCCCCAGTTTATC
*
86217947 AAAAGGGC-TTTGCCCCAG-TTATT
1 AAAAGGGCTTTTGCCCCAGTTTATC
86217970 AAAAGAGGCT
1 AAAAG-GGCT
86217980 AGGCCTCCAG
Statistics
Matches: 52, Mismatches: 4, Indels: 5
0.85 0.07 0.08
Matches are distributed among these distances:
23 9 0.17
24 13 0.25
25 8 0.15
26 22 0.42
ACGTcount: A:0.30, C:0.23, G:0.21, T:0.26
Consensus pattern (25 bp):
AAAAGGGCTTTTGCCCCAGTTTATC
Found at i:86233108 original size:200 final size:200
Alignment explanation
Indices: 86232765--86233164 Score: 764
Period size: 200 Copynumber: 2.0 Consensus size: 200
86232755 AATCCAGTTC
* *
86232765 CGTGAATTTTCCCTGCAACTAGACTCATATTCCCATCTACATATTTTTTTCTAGAATTTTTGGTT
1 CGTGAATTTTCCCTGAAACTAGACTCATATTCCCATCTACATATATTTTTCTAGAATTTTTGGTT
86232830 GGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACTGGGGTCGACTACACTGACCTT
66 GGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACTGGGGTCGACTACACTGACCTT
* *
86232895 TGCGCATTACGACCTGGATATCTCCCTGTACAGAACTTCCATACTGATGCCGTTTGTTTCTATAG
131 TGCGCATTACGACCTGGATATCTCCCTGTACAGAACTTCCATACTGATACCGTTTATTTCTATAG
86232960 AAACT
196 AAACT
86232965 CGTGAATTTTCCCTGAAACTAGACTCATATTCCCATCTACATATATTTTTCTAGAATTTTTGGTT
1 CGTGAATTTTCCCTGAAACTAGACTCATATTCCCATCTACATATATTTTTCTAGAATTTTTGGTT
86233030 GGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACTGGGGTCGACTACACTGACCTT
66 GGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACTGGGGTCGACTACACTGACCTT
86233095 TGCGCATTACGACCTGGATATCTCCCTGTACAGAACTTCCATACTGATACCGTTTATTTCTATAG
131 TGCGCATTACGACCTGGATATCTCCCTGTACAGAACTTCCATACTGATACCGTTTATTTCTATAG
86233160 AAACT
196 AAACT
86233165 AGACTCAGAG
Statistics
Matches: 196, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
200 196 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (200 bp):
CGTGAATTTTCCCTGAAACTAGACTCATATTCCCATCTACATATATTTTTCTAGAATTTTTGGTT
GGGCCAATTAGTACAGTTTATTAGTCAAAGTCTCCCATGTTACTGGGGTCGACTACACTGACCTT
TGCGCATTACGACCTGGATATCTCCCTGTACAGAACTTCCATACTGATACCGTTTATTTCTATAG
AAACT
Found at i:86234412 original size:28 final size:27
Alignment explanation
Indices: 86234349--86234465 Score: 180
Period size: 27 Copynumber: 4.3 Consensus size: 27
86234339 ATATTAAGTC
* *
86234349 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
86234376 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
86234404 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
86234431 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
86234459 CGCACAC
1 CGCACAC
86234466 GTAGCGCCAA
Statistics
Matches: 85, Mismatches: 3, Indels: 3
0.93 0.03 0.03
Matches are distributed among these distances:
27 48 0.56
28 37 0.44
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:86234433 original size:55 final size:55
Alignment explanation
Indices: 86234349--86234465 Score: 198
Period size: 55 Copynumber: 2.1 Consensus size: 55
86234339 ATATTAAGTC
*
86234349 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
* * *
86234404 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
86234459 CGCACAC
1 CGCACAC
86234466 GTAGCGCCAA
Statistics
Matches: 58, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
55 58 1.00
ACGTcount: A:0.32, C:0.31, G:0.13, T:0.24
Consensus pattern (55 bp):
CGCACACTCAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:86238427 original size:40 final size:40
Alignment explanation
Indices: 86238395--86238664 Score: 423
Period size: 40 Copynumber: 6.8 Consensus size: 40
86238385 CCAGCATGAT
* * * *
86238395 TGCTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * *
86238435 TGCTCTTCGGAACTTAGTCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86238475 TGCTCTTCGAGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86238515 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* *
86238555 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
86238595 TGCTCTTCGGGACTTAGCCCGGGTACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
86238635 TGCTCTTCGGGACTTAGCCCGGATACATCA
1 TGCTCTTCGGGACTTAGCCCGGATACATCA
86238665 TCGTCGAGAC
Statistics
Matches: 214, Mismatches: 16, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 214 1.00
ACGTcount: A:0.24, C:0.29, G:0.23, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:86240952 original size:47 final size:47
Alignment explanation
Indices: 86240891--86241342 Score: 687
Period size: 47 Copynumber: 9.5 Consensus size: 47
86240881 CTTCGGGACT
* * * * *
86240891 TATCACATTTATACACTTTCACATCCATCACGTTGGCCATTCGGCCC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
86240938 TGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
86240984 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
86241031 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
86241078 TCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGG-CC
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* *
86241125 TCATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCT
1 T-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
86241173 TATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
* * *
86241222 TATCACATACATATACACTTTCACATTCATCACATTGGCCATTCGGCCT
1 TATCACAT--ATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
*
86241271 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCT
1 TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
86241318 TATCACATATATACACTTTCACATT
1 TATCACATATATACACTTTCACATT
86241343 TATTCAAATA
Statistics
Matches: 385, Mismatches: 14, Indels: 12
0.94 0.03 0.03
Matches are distributed among these distances:
46 3 0.01
47 289 0.75
48 2 0.01
49 91 0.24
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.32
Consensus pattern (47 bp):
TATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCC
Found at i:86245389 original size:43 final size:44
Alignment explanation
Indices: 86245290--86245411 Score: 151
Period size: 43 Copynumber: 2.8 Consensus size: 44
86245280 ACCAAGATGT
*
86245290 GATTACATGTAAGACCATGTCTGGGACATTGGCAT-TGTATTAT
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTATTAC
* * *
86245333 GAATACGTATAAGACCATGTCTGGGACATTGGCATCAT-TATT-C
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATC-TGTATTAC
* * *
86245376 GATTTCATGTAAGACCCTGTCTGGGACAGTGGCATC
1 GATTACATGTAAGACCATGTCTGGGACATTGGCATC
86245412 GATATGTGAT
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
43 62 0.93
44 4 0.06
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (44 bp):
GATTACATGTAAGACCATGTCTGGGACATTGGCATCTGTATTAC
Found at i:86245429 original size:43 final size:42
Alignment explanation
Indices: 86245296--86245436 Score: 146
Period size: 43 Copynumber: 3.3 Consensus size: 42
86245286 ATGTGATTAC
*
86245296 ATGTAAGACCATGTCTGGGACATTGGCATTG-TATT-ATGAAT
1 ATGTAAGACCATGTCTGGGACATTGGCATCGATATTGAT-AAT
* *
86245337 ACGTATAAGACCATGTCTGGGACATTGGCATC-ATTATTCGAT-TT
1 A--TGTAAGACCATGTCTGGGACATTGGCATCGA-TATT-GATAAT
* *
86245381 CATGTAAGACCCTGTCTGGGACAGTGGCATCGATATGTGATAAT
1 -ATGTAAGACCATGTCTGGGACATTGGCATCGATAT-TGATAAT
86245425 ATGTAAGACCAT
1 ATGTAAGACCAT
86245437 ATTGGGGATA
Statistics
Matches: 82, Mismatches: 8, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
41 1 0.01
43 70 0.85
44 8 0.10
45 1 0.01
46 2 0.02
ACGTcount: A:0.29, C:0.16, G:0.23, T:0.31
Consensus pattern (42 bp):
ATGTAAGACCATGTCTGGGACATTGGCATCGATATTGATAAT
Found at i:86247327 original size:46 final size:46
Alignment explanation
Indices: 86247274--86247495 Score: 288
Period size: 46 Copynumber: 4.8 Consensus size: 46
86247264 TATTTGGGCA
86247274 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
86247320 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *** * *
86247366 TCCGAACTCGTTGAGTTGAGTCCAAGTTCGAGAGATGTAACTAG-GCA--
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATG-GA-T-GCGAATG
* * *
86247413 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
86247459 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86247496 GCGGGTTACA
Statistics
Matches: 154, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
43 1 0.01
44 2 0.01
45 1 0.01
46 114 0.74
47 31 0.20
48 1 0.01
49 3 0.02
50 1 0.01
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86258606 original size:516 final size:516
Alignment explanation
Indices: 86257628--86258662 Score: 1874
Period size: 516 Copynumber: 2.0 Consensus size: 516
86257618 AAATATTTAA
* *
86257628 TGACGTAAAAAGATTTGAATTTACGATAGAGAAGATGGTTAGAACTGCTAAAAGACTACGAACTT
1 TGACGCAAAAAGATTTGAATTTACGATAGAGAAGATGGTTAGAACTACTAAAAGACTACGAACTT
* **
86257693 GTGATTGATTATCACCCGGGAAAAGTAAATGTGGTTGCTGATGCTTTGAGTCGAAAATCGTTATT
66 GTGATTGATTATCACCCAGGAAAAGTAAATGTGGTTGCCAATGCTTTGAGTCGAAAATCGTTATT
86257758 TGCAATGAATGCTCATTTAGTTCGTTCTGATAATGGTTCAGTTTTAGCTGAATTAAAAGCGAGAC
131 TGCAATGAATGCTCATTTAGTTCGTTCTGATAATGGTTCAGTTTTAGCTGAATTAAAAGCGAGAC
*
86257823 CTTTTTTTTACAATAGATTATTGAAGCTTAGAAGGTTGATAATAAAATTATGGCTAAACGAACTC
196 CTTTTTTTTACAACAGATTATTGAAGCTTAGAAGGTTGATAATAAAATTATGGCTAAACGAACTC
*
86257888 AATGTAATTTTGATTCTGATTCTGAATTTCGAATAGATGATGATGATTGTCTGAGGTTCAGAAAT
261 AATGTAATTTTGATTCTGATTCTGAATTTCGAATAGATGATGATGATTGTATGAGGTTCAGAAAT
86257953 AGACTTTGTGTTCCAAGAAATCTGGATTTCATACAAAAAATTTTGAGTGAAGCTCACAGTAGTAG
326 AGACTTTGTGTTCCAAGAAATCTGGATTTCATACAAAAAATTTTGAGTGAAGCTCACAGTAGTAG
86258018 ATTTTCTATACATCCGGGAAGTACAAAAATGTATAATGATTTGAAACAACTATACTGGTGCCCAG
391 ATTTTCTATACATCCGGGAAGTACAAAAATGTATAATGATTTGAAACAACTATACTGGTGCCCAG
* *
86258083 GAATGAAAAGAGATATTTCTAACTTTGTTTCAAGATGTTTTATTTGTCAGCAAGTTAAAGC
456 GAATGAAAAGAGATATTTCTAACTTCGTTTCAAGATGTTTAATTTGTCAGCAAGTTAAAGC
*
86258144 TGACGCAAAAAGATTTGAATTTACGATAGAGAAGATGGTTAGAACTATTAAAAGACTACGAACTT
1 TGACGCAAAAAGATTTGAATTTACGATAGAGAAGATGGTTAGAACTACTAAAAGACTACGAACTT
** * *
86258209 GTGATTGATTATTTCCCAGGAAAAGTAAATGTGGTTGCCAATGCTTTGAGTCGGAAATTGTTATT
66 GTGATTGATTATCACCCAGGAAAAGTAAATGTGGTTGCCAATGCTTTGAGTCGAAAATCGTTATT
86258274 TGCAATGAATGCTCATTTAGTTC-TGTCTGATAATGGTTCAGTTTTAGCTGAATTAAAAGCGAGA
131 TGCAATGAATGCTCATTTAGTTCGT-TCTGATAATGGTTCAGTTTTAGCTGAATTAAAAGCGAGA
86258338 CCTTTTTTTTACAACAGATTATTGAAGCTTAGAAGGTTGATAATAAAATTATGGCTAAACGAACT
195 CCTTTTTTTTACAACAGATTATTGAAGCTTAGAAGGTTGATAATAAAATTATGGCTAAACGAACT
86258403 CAATGTAATTTTGATTCTGATTCTGAATTTCGAATAGATGATGATGATTGTATGAGGTTCAGAAA
260 CAATGTAATTTTGATTCTGATTCTGAATTTCGAATAGATGATGATGATTGTATGAGGTTCAGAAA
* *
86258468 TAGACTTTGTGTTCCAAGAAATCTGGATTTGATACAAACAATTTTGAGTGAAGCTCACAGTAGTA
325 TAGACTTTGTGTTCCAAGAAATCTGGATTTCATACAAAAAATTTTGAGTGAAGCTCACAGTAGTA
* * *
86258533 GATTTTCTGTACATCCGGGAAGTACAAAAATGTATAATGATTTGAAACAACTATACTGGTGGCCG
390 GATTTTCTATACATCCGGGAAGTACAAAAATGTATAATGATTTGAAACAACTATACTGGTGCCCA
*
86258598 GGAATGAAAAGAGATATTTCTGACTTCGTTTCAAGATGTTTAATTTGTCAGCAAGTTAAAGC
455 GGAATGAAAAGAGATATTTCTAACTTCGTTTCAAGATGTTTAATTTGTCAGCAAGTTAAAGC
86258660 TGA
1 TGA
86258663 ACATCAGGTG
Statistics
Matches: 498, Mismatches: 20, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
515 1 0.00
516 497 1.00
ACGTcount: A:0.34, C:0.12, G:0.20, T:0.34
Consensus pattern (516 bp):
TGACGCAAAAAGATTTGAATTTACGATAGAGAAGATGGTTAGAACTACTAAAAGACTACGAACTT
GTGATTGATTATCACCCAGGAAAAGTAAATGTGGTTGCCAATGCTTTGAGTCGAAAATCGTTATT
TGCAATGAATGCTCATTTAGTTCGTTCTGATAATGGTTCAGTTTTAGCTGAATTAAAAGCGAGAC
CTTTTTTTTACAACAGATTATTGAAGCTTAGAAGGTTGATAATAAAATTATGGCTAAACGAACTC
AATGTAATTTTGATTCTGATTCTGAATTTCGAATAGATGATGATGATTGTATGAGGTTCAGAAAT
AGACTTTGTGTTCCAAGAAATCTGGATTTCATACAAAAAATTTTGAGTGAAGCTCACAGTAGTAG
ATTTTCTATACATCCGGGAAGTACAAAAATGTATAATGATTTGAAACAACTATACTGGTGCCCAG
GAATGAAAAGAGATATTTCTAACTTCGTTTCAAGATGTTTAATTTGTCAGCAAGTTAAAGC
Found at i:86259704 original size:16 final size:16
Alignment explanation
Indices: 86259683--86259714 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
86259673 AAAATTTCTC
86259683 TAGTTAAAGTGATGTG
1 TAGTTAAAGTGATGTG
86259699 TAGTTAAAGTGATGTG
1 TAGTTAAAGTGATGTG
86259715 GCATCGACAC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.31, T:0.38
Consensus pattern (16 bp):
TAGTTAAAGTGATGTG
Found at i:86266073 original size:28 final size:27
Alignment explanation
Indices: 86266041--86266134 Score: 82
Period size: 28 Copynumber: 3.2 Consensus size: 27
86266031 AACTAGTCCT
86266041 TAGCCCATATCAATATCAATCTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCC
*
86266068 ATAGCCCCT-TGCAATATCAGAGTATACTGGGCC
1 -TAGCCCATAT-CAATATC--A--AT-CTGGGCC
* *
86266101 TATCCCATATCAGTATCAATCTGGGCC
1 TAGCCCATATCAATATCAATCTGGGCC
86266128 GTAGCCC
1 -TAGCCC
86266135 TATAACAAGT
Statistics
Matches: 53, Mismatches: 5, Indels: 16
0.72 0.07 0.22
Matches are distributed among these distances:
27 8 0.15
28 21 0.40
30 2 0.04
32 14 0.26
33 8 0.15
ACGTcount: A:0.27, C:0.30, G:0.18, T:0.26
Consensus pattern (27 bp):
TAGCCCATATCAATATCAATCTGGGCC
Found at i:86266159 original size:60 final size:60
Alignment explanation
Indices: 86266038--86266173 Score: 154
Period size: 60 Copynumber: 2.2 Consensus size: 60
86266028 GTTAACTAGT
*
86266038 CCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCCTTGCAATATCAGAGTATACTGGG
1 CCTT-GCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAATATCAGAGTATACTGGG
* * * *
86266099 CCTAT-CCCATATCAGTATCAATCTGGGCCGTAG-CCCTATAACAA-GTCA-AGATATATTGGG
1 CCT-TGCCCATATCAATATCAATCTGGGCCATAGCCCCT-T-ACAATATCAGAG-TATACTGGG
86266159 CCTTGCCCATATCAA
1 CCTTGCCCATATCAA
86266174 CACAGTTGGC
Statistics
Matches: 64, Mismatches: 6, Indels: 11
0.79 0.07 0.14
Matches are distributed among these distances:
59 7 0.11
60 50 0.78
61 6 0.09
62 1 0.02
ACGTcount: A:0.29, C:0.28, G:0.17, T:0.26
Consensus pattern (60 bp):
CCTTGCCCATATCAATATCAATCTGGGCCATAGCCCCTTACAATATCAGAGTATACTGGG
Found at i:86266960 original size:33 final size:33
Alignment explanation
Indices: 86266923--86266989 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
86266913 ACGATATCCT
86266923 AAAATCGGTCACTAGACATATCAGATCCAAAGA
1 AAAATCGGTCACTAGACATATCAGATCCAAAGA
86266956 AAAATCGGTCACTAGACATATCAGATCCAAAGA
1 AAAATCGGTCACTAGACATATCAGATCCAAAGA
86266989 A
1 A
86266990 TAATGGCAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.18
Consensus pattern (33 bp):
AAAATCGGTCACTAGACATATCAGATCCAAAGA
Found at i:86268778 original size:17 final size:17
Alignment explanation
Indices: 86268758--86268796 Score: 53
Period size: 17 Copynumber: 2.3 Consensus size: 17
86268748 ATAAATAATG
*
86268758 AAAATAAATGAAT-ATGA
1 AAAATAAAAGAATGAT-A
86268775 AAAATAAAAGAATGATA
1 AAAATAAAAGAATGATA
86268792 AAAAT
1 AAAAT
86268797 CAATAAACCA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
17 18 0.90
18 2 0.10
ACGTcount: A:0.69, C:0.00, G:0.10, T:0.21
Consensus pattern (17 bp):
AAAATAAAAGAATGATA
Found at i:86272013 original size:30 final size:30
Alignment explanation
Indices: 86271967--86272026 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
86271957 TTCCCGAGCC
86271967 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGAAAAAGTGTAATTATGCAAAAGTT
* *
86271997 TAGGGGCAAAAA-TGTAATTTTGCCAAAGTT
1 TAGGGG-AAAAAGTGTAATTATGCAAAAGTT
86272027 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
30 22 0.81
31 5 0.19
ACGTcount: A:0.40, C:0.07, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGAAAAAGTGTAATTATGCAAAAGTT
Found at i:86285693 original size:40 final size:40
Alignment explanation
Indices: 86285621--86285788 Score: 189
Period size: 40 Copynumber: 4.3 Consensus size: 40
86285611 GGACTAAGAT
* * * *
86285621 CCGAAGGCCTTTGTGCGAGATACTAAACCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTTAAGTC
* * *
86285661 CCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTTAAGTC
** * *
86285701 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTTAAGTC
* * *
86285741 CCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCT--GTC
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTTAAGTC
86285778 CCGAAGGCATT
1 CCGAAGGCATT
86285789 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
37 12 0.11
38 1 0.01
39 19 0.17
40 79 0.71
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGTTAAGTC
Found at i:86285809 original size:77 final size:79
Alignment explanation
Indices: 86285643--86285823 Score: 188
Period size: 77 Copynumber: 2.3 Consensus size: 79
86285633 GTGCGAGATA
* * * * *
86285643 CTAAACCCGGGTTAAGTCCCGAGGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCT-AGTCCCGAAGG
** **
86285708 CATTCGTGCGAGTTG
65 CATTCGAACGAGGAG
* * * *
86285723 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGTGTGAGTTACTAAAACCGGGCT-GTCCCGAAGGC
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAGTCCCGAAGGC
*
86285786 ATTTGAACGAGGAG
66 ATTCGAACGAGGAG
* *
86285800 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
86285824 TACGTGAATT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
76 14 0.17
77 26 0.31
79 20 0.24
80 23 0.28
ACGTcount: A:0.25, C:0.22, G:0.30, T:0.23
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAGTCCCGAAGGC
ATTCGAACGAGGAG
Found at i:86289532 original size:37 final size:38
Alignment explanation
Indices: 86289472--86289546 Score: 107
Period size: 37 Copynumber: 2.0 Consensus size: 38
86289462 CCATAATCCA
* *
86289472 CTCCTTAAACCTCTCCTCTAATCTCTCCACCAACTAAT
1 CTCCTTAAACCTCTACTCCAATCTCTCCACCAACTAAT
* *
86289510 CTCCTT-AACCTCTATTCCAATCTCTCCACCAATTAAT
1 CTCCTTAAACCTCTACTCCAATCTCTCCACCAACTAAT
86289547 TTGAACTATC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
37 27 0.82
38 6 0.18
ACGTcount: A:0.27, C:0.40, G:0.00, T:0.33
Consensus pattern (38 bp):
CTCCTTAAACCTCTACTCCAATCTCTCCACCAACTAAT
Found at i:86296598 original size:36 final size:36
Alignment explanation
Indices: 86296544--86296618 Score: 132
Period size: 36 Copynumber: 2.1 Consensus size: 36
86296534 GGGTGTCGTC
*
86296544 TTTATCAATTTCTATTCTTCAAGTCTTTTTCCAAAT
1 TTTATCAATTGCTATTCTTCAAGTCTTTTTCCAAAT
*
86296580 TTTATCAATTGCTTTTCTTCAAGTCTTTTTCCAAAT
1 TTTATCAATTGCTATTCTTCAAGTCTTTTTCCAAAT
86296616 TTT
1 TTT
86296619 CTCTTTGCTT
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.23, C:0.19, G:0.04, T:0.55
Consensus pattern (36 bp):
TTTATCAATTGCTATTCTTCAAGTCTTTTTCCAAAT
Found at i:86299381 original size:49 final size:49
Alignment explanation
Indices: 86299264--86299440 Score: 239
Period size: 49 Copynumber: 3.6 Consensus size: 49
86299254 AATTGTGATG
* * **
86299264 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCA-AATGGTTAGGTC
1 ACGTGTGTAGTACTAAGTACAGGCTACTACGTGTA-CAGGATAATT-GGTC
86299314 ACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACAGGATAATTGGTC
1 ACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACAGGATAATTGGTC
* *
86299363 ACGTGTGTAGTATTAAGTACAGGCTACTACGTGTACCGGATAATTGGTC
1 ACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACAGGATAATTGGTC
* * * *
86299412 GCATGTGTAGTACTATGTGCAGGCTACTA
1 ACGTGTGTAGTACTAAGTACAGGCTACTA
86299441 TGCGTACCAG
Statistics
Matches: 115, Mismatches: 11, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
49 77 0.67
50 38 0.33
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (49 bp):
ACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACAGGATAATTGGTC
Found at i:86299448 original size:49 final size:49
Alignment explanation
Indices: 86299209--86299453 Score: 233
Period size: 49 Copynumber: 4.9 Consensus size: 49
86299199 TCTATTGTGA
* * * * ** * *
86299209 GGTCGCATGTGCAGTACTAAGTGCATGCTACTATGCATACCCGAAAATT
1 GGTCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * **
86299258 GTGAT-GACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 G-G-TCG-CGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* *
86299309 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTA-CAGGATAATT
1 -GGTCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA-GATAATT
* * * *
86299359 GGTCACGTGTGTAGTATTAAGTACAGGCTACTACGTGTACCGGATAATT
1 GGTCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
86299408 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
86299454 GCTTTGGCTA
Statistics
Matches: 162, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
49 86 0.53
50 41 0.25
51 34 0.21
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
GGTCGCGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:86303559 original size:17 final size:17
Alignment explanation
Indices: 86303537--86303600 Score: 74
Period size: 17 Copynumber: 3.7 Consensus size: 17
86303527 TTTTGATTTA
* *
86303537 TTTATTCTTATTCTCAT
1 TTTATTTTTATTTTCAT
*
86303554 TTTATTTTTATTTTTAT
1 TTTATTTTTATTTTCAT
86303571 TTTGATTTTTATTTTCAT
1 TTT-ATTTTTATTTTCAT
* *
86303589 TTAAATTTTATT
1 TTTATTTTTATT
86303601 ATTTTATTTT
Statistics
Matches: 40, Mismatches: 6, Indels: 2
0.83 0.12 0.04
Matches are distributed among these distances:
17 25 0.62
18 15 0.38
ACGTcount: A:0.20, C:0.06, G:0.02, T:0.72
Consensus pattern (17 bp):
TTTATTTTTATTTTCAT
Found at i:86303570 original size:12 final size:12
Alignment explanation
Indices: 86303544--86303590 Score: 60
Period size: 12 Copynumber: 4.0 Consensus size: 12
86303534 TTATTTATTC
*
86303544 TTATTCTCA-TT
1 TTATTTTCATTT
*
86303555 TTATTTTTATTT
1 TTATTTTCATTT
*
86303567 TTATTTTGATTT
1 TTATTTTCATTT
86303579 TTATTTTCATTT
1 TTATTTTCATTT
86303591 AAATTTTATT
Statistics
Matches: 31, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
11 7 0.23
12 24 0.77
ACGTcount: A:0.17, C:0.06, G:0.02, T:0.74
Consensus pattern (12 bp):
TTATTTTCATTT
Found at i:86303572 original size:6 final size:6
Alignment explanation
Indices: 86303553--86303590 Score: 58
Period size: 6 Copynumber: 6.3 Consensus size: 6
86303543 CTTATTCTCA
* *
86303553 TTTTAT TTTTAT TTTTAT TTTGAT TTTTAT TTTCAT TT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TTTTAT TT
86303591 AAATTTTATT
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.79
Consensus pattern (6 bp):
TTTTAT
Found at i:86303589 original size:35 final size:37
Alignment explanation
Indices: 86303544--86303612 Score: 97
Period size: 35 Copynumber: 1.9 Consensus size: 37
86303534 TTATTTATTC
* *
86303544 TTATTCTCATTTTATTTTTA-T-TTTTATTTTGATTT
1 TTATTCTCATTTAAATTTTATTATTTTATTTTGATTT
*
86303579 TTATTTTCATTTAAATTTTATTATTTTATTTTGA
1 TTATTCTCATTTAAATTTTATTATTTTATTTTGA
86303613 AAGACATATC
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
35 17 0.59
36 1 0.03
37 11 0.38
ACGTcount: A:0.22, C:0.04, G:0.03, T:0.71
Consensus pattern (37 bp):
TTATTCTCATTTAAATTTTATTATTTTATTTTGATTT
Found at i:86318884 original size:22 final size:23
Alignment explanation
Indices: 86318859--86318901 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
86318849 TATCCCCACA
*
86318859 TGGAGTGTAG-GGCTGGACGGAG
1 TGGAGTGTAGAGGATGGACGGAG
86318881 TGGAGTGTAGAGGATGGACGG
1 TGGAGTGTAGAGGATGGACGG
86318902 GCAGGACTTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.21, C:0.07, G:0.53, T:0.19
Consensus pattern (23 bp):
TGGAGTGTAGAGGATGGACGGAG
Found at i:86323633 original size:40 final size:40
Alignment explanation
Indices: 86323575--86323655 Score: 108
Period size: 40 Copynumber: 2.0 Consensus size: 40
86323565 AAGGTAAATA
* * *
86323575 GTACTCATCTCAAACCTTATTTTGATAAGATTGATAGCAG
1 GTACTCATCTCAAACCTTATGTTGATAAAACTGATAGCAG
* * *
86323615 GTACTTATCTTAACCCTTATGTTGATAAAACTGATAGCAG
1 GTACTCATCTCAAACCTTATGTTGATAAAACTGATAGCAG
86323655 G
1 G
86323656 AATGAGGAGT
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.32, C:0.17, G:0.16, T:0.35
Consensus pattern (40 bp):
GTACTCATCTCAAACCTTATGTTGATAAAACTGATAGCAG
Found at i:86324341 original size:15 final size:15
Alignment explanation
Indices: 86324309--86324347 Score: 51
Period size: 15 Copynumber: 2.5 Consensus size: 15
86324299 TCCCTTTTCC
*
86324309 TTCTTTCTTTTTCTTA
1 TTCTTTC-TTTCCTTA
86324325 TTCTTTCTTTCCTTA
1 TTCTTTCTTTCCTTA
*
86324340 TTATTTCT
1 TTCTTTCT
86324348 CTTTCTTCTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 14 0.67
16 7 0.33
ACGTcount: A:0.08, C:0.21, G:0.00, T:0.72
Consensus pattern (15 bp):
TTCTTTCTTTCCTTA
Found at i:86327516 original size:47 final size:47
Alignment explanation
Indices: 86327461--86328317 Score: 1696
Period size: 47 Copynumber: 18.2 Consensus size: 47
86327451 TAGTATTAAT
86327461 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327508 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327555 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327602 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327649 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327696 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327743 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327790 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327837 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327884 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327931 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86327978 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86328025 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86328072 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86328119 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86328166 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
86328213 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
86328260 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
86328307 AATGTGATAAG
1 TATGTGATAAG
86328318 TCCCGAAGGG
Statistics
Matches: 808, Mismatches: 2, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 808 1.00
ACGTcount: A:0.32, C:0.08, G:0.32, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
Found at i:86330370 original size:40 final size:40
Alignment explanation
Indices: 86330318--86330553 Score: 373
Period size: 40 Copynumber: 5.9 Consensus size: 40
86330308 CTCGACGATG
* * *
86330318 ATCCGGGAAAAATCCCGAAGGGCATTCATGCCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
86330358 ATCCGGTCAAAATCCCAAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
86330398 ATCCGGGCAAAATCCTGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
86330438 ATCCGGGCAAAATCCCGAAGGGCATTTGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
86330478 ATCCGGGCAAAATCCCGAAGGGCATTCGTGTCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
86330518 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTG
86330554 ATGTGTATTC
Statistics
Matches: 179, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 179 1.00
ACGTcount: A:0.24, C:0.24, G:0.29, T:0.24
Consensus pattern (40 bp):
ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Found at i:86336042 original size:40 final size:40
Alignment explanation
Indices: 86335983--86336178 Score: 311
Period size: 40 Copynumber: 4.9 Consensus size: 40
86335973 CTCGACGATG
86335983 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
86336023 ATCTGGGCAAAATCCCGAAGGGCATTCGTGTCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
*
86336063 ATCCGGGCAAAATTCCGAAGGGCATTCGTGCCGGTGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* * * *
86336103 ATCCAGGCTAAATCCCGAAGGGTATTCGTGCCGATGTTAT
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
* *
86336143 ATCCGGGCTAAGTCCCGAAGGGCATTCGTGCCGGTG
1 ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTG
86336179 ATGTGTATTC
Statistics
Matches: 142, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 142 1.00
ACGTcount: A:0.22, C:0.23, G:0.30, T:0.24
Consensus pattern (40 bp):
ATCCGGGCAAAATCCCGAAGGGCATTCGTGCCGGTGTTAT
Done.