Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 252 of 297
Found at i:86340422 original size:47 final size:47
Alignment explanation
Indices: 86340367--86340613 Score: 302
Period size: 47 Copynumber: 5.2 Consensus size: 47
86340357 TAGTATTAAT
86340367 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
86340414 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGCAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
* * * ** ** * ** * *
86340461 TGTATAATGTGGCCGAATGATCAATTGGGA-AAAGTGTG-TAGTAT-TAA
1 TATGTGATAAGGCCGAATGGCCAA-TGTGATGGA-TGTGAAAGTGTAT-A
86340508 TTATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 -TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
86340556 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
*
86340603 AATGTGATAAG
1 TATGTGATAAG
86340614 TCCGGAAGGG
Statistics
Matches: 166, Mismatches: 27, Indels: 14
0.80 0.13 0.07
Matches are distributed among these distances:
46 1 0.01
47 133 0.80
48 31 0.19
49 1 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
Found at i:86340575 original size:142 final size:142
Alignment explanation
Indices: 86340319--86340602 Score: 550
Period size: 142 Copynumber: 2.0 Consensus size: 142
86340309 TATCTTTATT
86340319 TGTATAATGTGGCCGAATGATCAATTGGGAAAAGTGTGTAGTATTAATTATGTGATAAGGCCGAA
1 TGTATAATGTGGCCGAATGATCAATTGGGAAAAGTGTGTAGTATTAATTATGTGATAAGGCCGAA
*
86340384 TGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATG
66 TGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
*
86340449 TGCAAGTGTATA
131 TGAAAGTGTATA
86340461 TGTATAATGTGGCCGAATGATCAATTGGGAAAAGTGTGTAGTATTAATTATGTGATAAGGCCGAA
1 TGTATAATGTGGCCGAATGATCAATTGGGAAAAGTGTGTAGTATTAATTATGTGATAAGGCCGAA
86340526 TGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
66 TGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
86340591 TGAAAGTGTATA
131 TGAAAGTGTATA
86340603 AATGTGATAA
Statistics
Matches: 140, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
142 140 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.30
Consensus pattern (142 bp):
TGTATAATGTGGCCGAATGATCAATTGGGAAAAGTGTGTAGTATTAATTATGTGATAAGGCCGAA
TGGCCAATGTGATGGATGTGAAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATG
TGAAAGTGTATA
Found at i:86344529 original size:16 final size:16
Alignment explanation
Indices: 86344504--86344539 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 16
86344494 TTCAATTGAT
86344504 GTTAGTAATTT-TCTA
1 GTTAGTAATTTATCTA
86344519 GTTAGGTAATTTATCTA
1 GTTA-GTAATTTATCTA
86344536 GTTA
1 GTTA
86344540 ATCTCGATTC
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
15 4 0.21
16 7 0.37
17 8 0.42
ACGTcount: A:0.28, C:0.06, G:0.17, T:0.50
Consensus pattern (16 bp):
GTTAGTAATTTATCTA
Found at i:86358464 original size:47 final size:47
Alignment explanation
Indices: 86358407--86358710 Score: 412
Period size: 47 Copynumber: 6.4 Consensus size: 47
86358397 ATTGATGTAC
* * *
86358407 AAGTATATATATGTGATAGGGCCGAGTGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * *
86358454 AAGTTTATATATATGTGATAGGGCCGAGTGGCCAACGTGATGAATGTGA
1 AAG--TGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * * ** *
86358503 AAGTGTATATATGTGATAGGGTCGAGTGATCAACGTGATGAATGT-A
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
86358549 GAAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
1 -AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
* * *
86358597 AAGTGTATATATGAGATAAGACCTAATGGCCAATGTGATGAATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86358644 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGA
1 AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
*
86358691 AAGTGTATAAATGTGATAAG
1 AAGTGTATATATGTGATAAG
86358711 TCCCGAAGGG
Statistics
Matches: 234, Mismatches: 19, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
46 1 0.00
47 186 0.79
48 1 0.00
49 46 0.20
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
AAGTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGA
Found at i:86361826 original size:94 final size:93
Alignment explanation
Indices: 86361661--86361916 Score: 288
Period size: 94 Copynumber: 2.7 Consensus size: 93
86361651 TTTGTGCGCC
* * * * * *
86361661 AGTGTAAGACGTGTCTGGGACATGC-TTCGGCCACATTATGAGAGGCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTAGGACATGCATT-GGCCATACTATGATAGCCAGTGTAAGACCATGTCTG
* *
86361725 GGGCATGGCATCGACATC-CAGACAAGGGCT
65 GGACATGGCA-CGACA-CAAAGACAAGGGCT
*
86361755 AGTGTAAGACATGTCTAGGACATGCATTAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTAGGACATGCATTGGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
** *
86361820 GACATGGCACGACACAAAGATGAGTGCT
66 GACATGGCACGACACAAAGACAAGGGCT
* * *
86361848 AGTATAAGACATGTCTAGGACATGCATTGGCC-T-CGATAGAGATAGCCAGTGTAAGA-CGTGTC
1 AGTGTAAGACATGTCTAGGACATGCATTGGCCATAC--TA-TGATAGCCAGTGTAAGACCATGTC
86361910 TGGGACA
63 TGGGACA
86361917 CGCATCGGCT
Statistics
Matches: 141, Mismatches: 16, Indels: 11
0.84 0.10 0.07
Matches are distributed among these distances:
91 1 0.01
92 2 0.01
93 57 0.40
94 79 0.56
95 2 0.01
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCATTGGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCACGACACAAAGACAAGGGCT
Found at i:86364835 original size:79 final size:80
Alignment explanation
Indices: 86364672--86364896 Score: 246
Period size: 79 Copynumber: 2.8 Consensus size: 80
86364662 TTGAATGATG
* * * * * * *
86364672 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGACTAAGTCCAGAAGGCATTTGTGCGAACT-ACTATAACCGGGCTAAG-TCCCGAAGGCAT
*
86364735 TTGTGCTAGATACTAAA
64 TTGTGCGAGATACTAAA
*
86364752 TCCGGACTAAGATCC-GAAGGCATTTGTGCGAGA-TACTA-ATTCCGGGCTAAG-CCCGAAGGCA
1 TCCGGACTAAG-TCCAGAAGGCATTTGTGCGA-ACTACTATA-ACCGGGCTAAGTCCCGAAGGCA
*
86364813 TTTGTGCGAGTTACTAAA
63 TTTGTGCGAGATACTAAA
** *
86364831 TCCGGGTTAAGTCCAGAAGGCATTTGTGCGAACTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGACTAAGTCCAGAAGGCATTTGTGCGAACTACTATAACCGGGCTAAGTCCCGAAGGCATTT
86364896 G
66 G
86364897 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 10, Indels: 18
0.82 0.06 0.12
Matches are distributed among these distances:
78 4 0.03
79 65 0.52
80 44 0.35
81 12 0.10
82 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (80 bp):
TCCGGACTAAGTCCAGAAGGCATTTGTGCGAACTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:86364861 original size:40 final size:40
Alignment explanation
Indices: 86364672--86364896 Score: 248
Period size: 40 Copynumber: 5.7 Consensus size: 40
86364662 TTGAATGATG
* * *
86364672 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAA
* *
86364712 TCCGGACTAAGAT-CCGAAGGCATTTGTGCTAGATACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* *
86364752 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
*
86364792 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* *
86364831 TCCGGGTTAAGTCCAGAAGGCATTTGTGCGA-ACTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTA-AA
*
86364872 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86364897 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 14, Indels: 14
0.85 0.07 0.07
Matches are distributed among these distances:
39 35 0.21
40 115 0.70
41 13 0.08
42 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:86364888 original size:119 final size:120
Alignment explanation
Indices: 86364672--86364896 Score: 282
Period size: 119 Copynumber: 1.9 Consensus size: 120
86364662 TTGAATGATG
*
86364672 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
*
86364737 GTGCTAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
66 GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * **
86364792 TCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCAGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCAT
* *
86364854 TTGTGCGA-ACTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
64 TTGTGCGAGA-TACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
86364897 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 9, Indels: 11
0.82 0.08 0.10
Matches are distributed among these distances:
118 5 0.05
119 66 0.73
120 20 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:86364918 original size:79 final size:79
Alignment explanation
Indices: 86364746--86364929 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 79
86364736 TGTGCTAGAT
** *
86364746 ACTAAATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGG
1 ACTAAATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGG
** *
86364811 CATTTGTGCGAGTT
66 CATTTGAACGAGTG
*
86364825 ACTAAATCCGGGTTAAG-TCCAGAAGGCATTTGTGCGA-ACTACT-ATAACCGGGCTATGTCCCG
1 ACTAAATCCGGGTTAAGATCC-GAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCG
86364887 AAGGCATTTGAACGAG-G
62 AAGGCATTTGAACGAGTG
*
86364904 AGCTATATCC-GGTTAA-ATTCCGAAGG
1 A-CTAAATCCGGGTTAAGA-TCCGAAGG
86364930 TACGTGATTT
Statistics
Matches: 90, Mismatches: 8, Indels: 14
0.80 0.07 0.12
Matches are distributed among these distances:
78 6 0.07
79 56 0.62
80 28 0.31
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (79 bp):
ACTAAATCCGGGTTAAGATCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGG
CATTTGAACGAGTG
Found at i:86370565 original size:43 final size:42
Alignment explanation
Indices: 86370516--86370598 Score: 141
Period size: 43 Copynumber: 2.0 Consensus size: 42
86370506 AAGTGATTCA
86370516 GGAATGCCTAAGAGCCGCTTCTG-ATAGGCAGAAATCCTACGC
1 GGAATGCCTAAGAGCCGCTTC-GAATAGGCAGAAATCCTACGC
86370558 GNGAATGCCTAAGAGCCGCTTCGAATAGGCAGAAATCCTAC
1 G-GAATGCCTAAGAGCCGCTTCGAATAGGCAGAAATCCTAC
86370599 ATGGATTTGA
Statistics
Matches: 39, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
42 2 0.05
43 37 0.95
ACGTcount: A:0.30, C:0.25, G:0.25, T:0.18
Consensus pattern (42 bp):
GGAATGCCTAAGAGCCGCTTCGAATAGGCAGAAATCCTACGC
Found at i:86372437 original size:47 final size:46
Alignment explanation
Indices: 86372377--86372643 Score: 208
Period size: 47 Copynumber: 5.7 Consensus size: 46
86372367 GACAAGGGCT
*
86372377 AGTGTAAGACATGTCTGGGACATGCATTAGC-CATACTATGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACATA-TATGATAGCC
* * * *
86372423 AGTGTAAGACCATGTCTGGGACATGGCACCGGCACAGAGATGAGT-GCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACATATATGA-TAGCC
* * * *
86372471 AGTATAAGACATGTCTGGGACATGCATCGGC-C-TGAACAGAGATAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACAT--ATA-TGATAGCC
* ** * *
86372518 AGTGTAAGACGTGTCTGGGACACACATCAGCTA-AGAGT-TG-TA-CT
1 AGTGTAAGACATGTCTGGGACATGCATCAGC-ACATA-TATGATAGCC
* *
86372562 AGTGTAAGACATGTCTGGGACATGCATCAACACGCATATATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCA--CATATATGATAGCC
*
86372610 AGTGTAAGACCATGTTTGGGACATGGCATCAGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCA
86372644 GTGTATCCCA
Statistics
Matches: 173, Mismatches: 28, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
43 1 0.01
44 28 0.16
45 4 0.02
46 24 0.14
47 61 0.35
48 30 0.17
49 17 0.10
50 8 0.05
ACGTcount: A:0.30, C:0.20, G:0.28, T:0.22
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACATATATGATAGCC
Found at i:86372448 original size:94 final size:93
Alignment explanation
Indices: 86372283--86372639 Score: 293
Period size: 94 Copynumber: 3.8 Consensus size: 93
86372273 TTTGCGCGCC
** * * * * *
86372283 AGTGTAAGATGTGTCT-GGAGCATGCTTTGGCCACATTATGAGAGCCACTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGA-CATGCATTAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTG
* * *
86372347 GGGCATGGCATCGACATCCAGACAAGGGCT
65 GGACATGGCATCGACAT-CAGAGAAGTGCT
*
86372377 AGTGTAAGACATGTCTGGGACATGCATTAGCCATACTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATTAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
* * *
86372442 GACATGGCACCGGCA-CAGAGATGAGTGCC
66 GACATGGCATCGACATCAGAGA--AGTGCT
* ** *
86372471 AGTATAAGACATGTCTGGGACATGCATCGGCC-TGAAC-A-GAGATAGCCAGTGTAAGA-CGTGT
1 AGTGTAAGACATGTCTGGGACATGCATTAGCCAT--ACTATGAG--AGCCAGTGTAAGACCATGT
** * ** *
86372532 CTGGGACA-CACATC-AGC-TAAGAGTTGTACT
62 CTGGGACATGGCATCGA-CATCAGAGAAGTGCT
* * *
86372562 AGTGTAAGACATGTCTGGGACATGCATCAACACGCATA-TATGAGAGCCAGTGTAAGACCATGTT
1 AGTGTAAGACATGTCTGGGACATGCAT-TA-GC-CATACTATGAGAGCCAGTGTAAGACCATGTC
86372626 TGGGACATGGCATC
63 TGGGACATGGCATC
86372640 AGCAGTGTAT
Statistics
Matches: 210, Mismatches: 36, Indels: 34
0.75 0.13 0.12
Matches are distributed among these distances:
91 29 0.14
92 18 0.09
93 25 0.12
94 119 0.57
95 19 0.09
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (93 bp):
AGTGTAAGACATGTCTGGGACATGCATTAGCCATACTATGAGAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACATCAGAGAAGTGCT
Found at i:86375939 original size:51 final size:51
Alignment explanation
Indices: 86375880--86375981 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
86375870 CGACTTAGCT
86375880 CTCCATTGAATGGTCATGGTGGTTCGAGGAGTTTATACTCCTCATTCCTGC
1 CTCCATTGAATGGTCATGGTGGTTCGAGGAGTTTATACTCCTCATTCCTGC
*
86375931 CTCCATTGAATGGTCATGGTGGTTCGAGGAGTTTATACTCCTCCTTCCTGC
1 CTCCATTGAATGGTCATGGTGGTTCGAGGAGTTTATACTCCTCATTCCTGC
86375982 TATCATTTTC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.17, C:0.25, G:0.24, T:0.35
Consensus pattern (51 bp):
CTCCATTGAATGGTCATGGTGGTTCGAGGAGTTTATACTCCTCATTCCTGC
Found at i:86386067 original size:48 final size:48
Alignment explanation
Indices: 86385996--86386091 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
86385986 TAGTAGTAAG
*
86385996 GGTATTTTGGTCATTTAGTTATTAAAATGAATTAAACACAAAATTAAA
1 GGTATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAA
86386044 GGTATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAA
1 GGTATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAA
86386092 AGCCAATTTT
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.45, C:0.05, G:0.12, T:0.38
Consensus pattern (48 bp):
GGTATTTTGGTCATTTAGTTATTAAAATGAATTAAAAACAAAATTAAA
Found at i:86387061 original size:46 final size:46
Alignment explanation
Indices: 86387008--86387136 Score: 204
Period size: 46 Copynumber: 2.8 Consensus size: 46
86386998 TGGTTAAGCA
86387008 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAATG
*
86387054 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAATG
* * * * *
86387100 CCCGAGCTCATTGAGTTGAGTCCAAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86387137 GCGGGTTACA
Statistics
Matches: 77, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGAAGCGAATG
Found at i:86394568 original size:46 final size:46
Alignment explanation
Indices: 86394515--86394687 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
86394505 TTAAGCATCT
86394515 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* * *
86394561 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G--TCC
* *
86394608 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
* *
86394654 GAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86394688 GCGGGTTACA
Statistics
Matches: 108, Mismatches: 10, Indels: 18
0.79 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.56
47 29 0.27
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.21, C:0.20, G:0.30, T:0.29
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCC
Found at i:86394668 original size:93 final size:93
Alignment explanation
Indices: 86394509--86394680 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
86394499 GGATGGTTAA
* * *
86394509 GCATCTGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAGT
86394574 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
*
86394602 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAGT
86394667 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
86394681 CTTATGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.22, C:0.20, G:0.30, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86396269 original size:134 final size:134
Alignment explanation
Indices: 86396115--86396389 Score: 435
Period size: 134 Copynumber: 2.1 Consensus size: 134
86396105 GAGGAACAAC
*
86396115 AGAAAGAATCGGTTCCTAGAAGCTCAATGCAGGAGCACAATTCAACCAACAAGGATTAGATTGCA
1 AGAAAGAATCAGTTCCTAGAAGCTCAATGCAGGAGCACAATTCAACCAACAAGGATTAGATTGCA
* *
86396180 CTGAAGAGAAGGGAGAAAGAAAAAGAATGACTCAGTCACCACAAGCCAAAATTGAATGAGATAGA
66 CTAAAGAGAAGGGAGAAAGAAAAAGAATGACTCAGTCACCACAAGCCAAAATCGAATGAGATAGA
86396245 GAGG
131 GAGG
* * * *
86396249 AGAAAGAATCAGTTCCTAGAAGGTTAATGCAGGAGCACTATTCGACCAACAAGGATTAGATTGCA
1 AGAAAGAATCAGTTCCTAGAAGCTCAATGCAGGAGCACAATTCAACCAACAAGGATTAGATTGCA
* * * * *
86396314 CTAAAGAGAGGGGAGAAAGAAAAAGAATGACTCGGTCACCATAATCCAAAATCGAATGAGATGGA
66 CTAAAGAGAAGGGAGAAAGAAAAAGAATGACTCAGTCACCACAAGCCAAAATCGAATGAGATAGA
86396379 GAGG
131 GAGG
86396383 A-AAAGAA
1 AGAAAGAA
86396390 GATACAATCG
Statistics
Matches: 129, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
133 6 0.05
134 123 0.95
ACGTcount: A:0.44, C:0.15, G:0.25, T:0.16
Consensus pattern (134 bp):
AGAAAGAATCAGTTCCTAGAAGCTCAATGCAGGAGCACAATTCAACCAACAAGGATTAGATTGCA
CTAAAGAGAAGGGAGAAAGAAAAAGAATGACTCAGTCACCACAAGCCAAAATCGAATGAGATAGA
GAGG
Found at i:86398367 original size:15 final size:16
Alignment explanation
Indices: 86398338--86398379 Score: 52
Period size: 15 Copynumber: 2.8 Consensus size: 16
86398328 AAGGGATACA
*
86398338 AAATAGAAA-AATAAC
1 AAATAAAAATAATAAC
*
86398353 AGA-AAAAATAATAAC
1 AAATAAAAATAATAAC
86398368 AAATAAAAATAA
1 AAATAAAAATAA
86398380 AATAAAACAT
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 4 0.18
15 10 0.45
16 8 0.36
ACGTcount: A:0.76, C:0.05, G:0.05, T:0.14
Consensus pattern (16 bp):
AAATAAAAATAATAAC
Found at i:86398945 original size:16 final size:17
Alignment explanation
Indices: 86398914--86398945 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
86398904 TTTTTTTCAA
86398914 AATTTTTTAAAGAATTC
1 AATTTTTTAAAGAATTC
86398931 AATTTTTTAAA-AATT
1 AATTTTTTAAAGAATT
86398946 GTTTTTCAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
AATTTTTTAAAGAATTC
Found at i:86401938 original size:193 final size:193
Alignment explanation
Indices: 86401605--86401990 Score: 657
Period size: 193 Copynumber: 2.0 Consensus size: 193
86401595 TGTCTAATTT
* *
86401605 GATAAAAGGACTTAATCGTGAAAATTGTAAAAGAGGCTTTCTATTTGTTAAAGTACTTATTTGTT
1 GATAAAAGGACTTAATCGTGAAAAATGTAAAAGAGGCTTTCTATTTGTTAAAGTACTTATTTGCT
* * **
86401670 ATGGTTTCTTAATTTTAAAGTCCTTAAAATGGAATTTGGCCATTGAAAAACGAGATTGATGGTTA
66 ATGGTTTCTTAATTTTAAAGTCCTTAAAATGAAATTTGGCCATTGAAAAACGAGATGGACAGTTA
* *
86401735 TGGGTTTAAAATGAATGATTTTATTTTGTATAAAGGATGGATAAAATTGTAAATTGTATATTA
131 TGGATTTAAAATGAATGATTTTATTTTGTATAAAAGATGGATAAAATTGTAAATTGTATATTA
86401798 GATAAAAGGACTTAATCAG-GAAAAATGTAAAAGAGGCTTTCTATTTGTTAAAGTACTTATTTGC
1 GATAAAAGGACTTAATC-GTGAAAAATGTAAAAGAGGCTTTCTATTTGTTAAAGTACTTATTTGC
* *
86401862 TATGGTTTCTTAATTTTAAAGTCCTTAAAATGAAATTTGGCCATTGAAAAATGGGATGGACAGTT
65 TATGGTTTCTTAATTTTAAAGTCCTTAAAATGAAATTTGGCCATTGAAAAACGAGATGGACAGTT
*
86401927 ATGGATTTAAAATGAATGATTTTATTTTGTATAAAAGATGGGTAAAATTGTAAATTGTATATTA
130 ATGGATTTAAAATGAATGATTTTATTTTGTATAAAAGATGGATAAAATTGTAAATTGTATATTA
86401991 ATAGGTAATA
Statistics
Matches: 181, Mismatches: 11, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
193 180 0.99
194 1 0.01
ACGTcount: A:0.37, C:0.06, G:0.19, T:0.38
Consensus pattern (193 bp):
GATAAAAGGACTTAATCGTGAAAAATGTAAAAGAGGCTTTCTATTTGTTAAAGTACTTATTTGCT
ATGGTTTCTTAATTTTAAAGTCCTTAAAATGAAATTTGGCCATTGAAAAACGAGATGGACAGTTA
TGGATTTAAAATGAATGATTTTATTTTGTATAAAAGATGGATAAAATTGTAAATTGTATATTA
Found at i:86404826 original size:50 final size:53
Alignment explanation
Indices: 86404769--86404879 Score: 183
Period size: 50 Copynumber: 2.2 Consensus size: 53
86404759 ATGTCATTTT
*
86404769 CATTTTCATTTTGGAGAAAA-CACA-TTCATTTCCAAATGTTTCC-ATTTCTC
1 CATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAATGTTTCCTATTTATC
*
86404819 CATTTTCATTTTGGAGAAAACCACATTTCATTTTCAAATGTTTCCTATTTATC
1 CATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAATGTTTCCTATTTATC
86404872 CATTTTCA
1 CATTTTCA
86404880 CCATTTCAAT
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
50 20 0.36
51 4 0.07
52 18 0.32
53 14 0.25
ACGTcount: A:0.28, C:0.21, G:0.07, T:0.44
Consensus pattern (53 bp):
CATTTTCATTTTGGAGAAAACCACATTTCATTTCCAAATGTTTCCTATTTATC
Found at i:86408359 original size:40 final size:40
Alignment explanation
Indices: 86408275--86408499 Score: 296
Period size: 40 Copynumber: 5.7 Consensus size: 40
86408265 TTGAATGATG
* * * *
86408275 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
86408315 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
86408355 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
86408394 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86408434 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
86408475 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86408500 AACGAGGAGC
Statistics
Matches: 165, Mismatches: 15, Indels: 10
0.87 0.08 0.05
Matches are distributed among these distances:
39 35 0.21
40 120 0.73
41 10 0.06
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86408521 original size:119 final size:119
Alignment explanation
Indices: 86408275--86408532 Score: 292
Period size: 119 Copynumber: 2.2 Consensus size: 119
86408265 TTGAATGATG
* *
86408275 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
* ** *
86408340 GTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
66 GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
* * * **
86408394 TCCGGGTTAAGTCCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
* * *
86408457 TTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATA
64 TTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAA
* *
86408514 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
86408533 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
118 3 0.03
119 84 0.71
120 31 0.26
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAA
Found at i:86410758 original size:39 final size:39
Alignment explanation
Indices: 86410704--86410780 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
86410694 ACCATAAAGA
86410704 TTATTCATCATTCAAACCCTTTTGGCTTACTTATCATAG
1 TTATTCATCATTCAAACCCTTTTGGCTTACTTATCATAG
86410743 TTATTCATCATTCAAACCCTTTTGGCTTACTTATCATA
1 TTATTCATCATTCAAACCCTTTTGGCTTACTTATCATA
86410781 TACACATATA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.26, C:0.23, G:0.06, T:0.44
Consensus pattern (39 bp):
TTATTCATCATTCAAACCCTTTTGGCTTACTTATCATAG
Found at i:86416889 original size:16 final size:16
Alignment explanation
Indices: 86416848--86416899 Score: 52
Period size: 16 Copynumber: 3.2 Consensus size: 16
86416838 GTAATAGACT
* *
86416848 AGCTTGTAAACTAAGG
1 AGCTTGTAAACTGACG
* *
86416864 AGCACT-TAAACTGATG
1 AGC-TTGTAAACTGACG
86416880 AGCTTGTAAACTGACG
1 AGCTTGTAAACTGACG
86416896 AGCT
1 AGCT
86416900 CACACGACAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
15 1 0.03
16 27 0.93
17 1 0.03
ACGTcount: A:0.35, C:0.17, G:0.23, T:0.25
Consensus pattern (16 bp):
AGCTTGTAAACTGACG
Found at i:86418274 original size:28 final size:28
Alignment explanation
Indices: 86418231--86418335 Score: 156
Period size: 28 Copynumber: 3.8 Consensus size: 28
86418221 ATTACCATAA
* *
86418231 ATGTGGAAGTTTGTCAAGACTATCTTAT
1 ATGTGGAAGTCTGTCAGGACTATCTTAT
*
86418259 ATGTGGAAGTCCGTCAGGACTATCTTAT
1 ATGTGGAAGTCTGTCAGGACTATCTTAT
*
86418287 ATGTTGAAGTCTGTCAGGACTATCTTAT
1 ATGTGGAAGTCTGTCAGGACTATCTTAT
* *
86418315 ATATGGAAGTTTGTCAGGACT
1 ATGTGGAAGTCTGTCAGGACT
86418336 GTGACAGCCC
Statistics
Matches: 69, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
28 69 1.00
ACGTcount: A:0.27, C:0.13, G:0.24, T:0.36
Consensus pattern (28 bp):
ATGTGGAAGTCTGTCAGGACTATCTTAT
Found at i:86437846 original size:7 final size:7
Alignment explanation
Indices: 86437824--86437861 Score: 58
Period size: 7 Copynumber: 5.3 Consensus size: 7
86437814 CACTAACATA
*
86437824 TTTTGAT
1 TTTTTAT
86437831 TTCTTTAT
1 TT-TTTAT
86437839 TTTTTAT
1 TTTTTAT
86437846 TTTTTAT
1 TTTTTAT
86437853 TTTTTAT
1 TTTTTAT
86437860 TT
1 TT
86437862 CTAACACTTT
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
7 23 0.79
8 6 0.21
ACGTcount: A:0.13, C:0.03, G:0.03, T:0.82
Consensus pattern (7 bp):
TTTTTAT
Found at i:86437856 original size:14 final size:15
Alignment explanation
Indices: 86437824--86437863 Score: 64
Period size: 14 Copynumber: 2.7 Consensus size: 15
86437814 CACTAACATA
*
86437824 TTTTGATTTCTTTAT
1 TTTTTATTTCTTTAT
86437839 TTTTTATTT-TTTAT
1 TTTTTATTTCTTTAT
86437853 TTTTTATTTCT
1 TTTTTATTTCT
86437864 AACACTTTAA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 14 0.61
15 9 0.39
ACGTcount: A:0.12, C:0.05, G:0.03, T:0.80
Consensus pattern (15 bp):
TTTTTATTTCTTTAT
Found at i:86439140 original size:174 final size:174
Alignment explanation
Indices: 86438844--86439193 Score: 558
Period size: 174 Copynumber: 2.0 Consensus size: 174
86438834 GATTTAGTTA
*
86438844 AATGTTAACACATCTTGGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
1 AATGTTAACACATCTTAGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
* * *
86438909 TCGAGAGGCAAGAATTCCATGGTCCCATCCTCAAAGAGACGTAGGGGATCGGGTTCTTCCTCTGT
66 TCGAGAGGCAAGAAGTCCATGGTCCCATCCTCAAAGAGACATAGGGGATCAGGTTCTTCCTCTGT
*
86438974 ACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTTGC
131 ACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTCGC
* *
86439018 AATGTTAACACATCTTAGACCTACTATATCAATGCTCATCCATATTCATGTACATTATGTCATCA
1 AATGTTAACACATCTTAGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
* * * *
86439083 TTGAGAGGCAAGAAGGT-CGTGGTCCTATCCTCAAAGAGATATAGGGGATCAGGTTCTTCCTCTG
66 TCGAGAGGCAAGAA-GTCCATGGTCCCATCCTCAAAGAGACATAGGGGATCAGGTTCTTCCTCTG
* * *
86439147 TACGTGCTACAGCTGAAGTTCGGCACTCATTCCTTGAGTTTTCGC
130 TACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTCGC
86439192 AA
1 AA
86439194 GCTTCATAGG
Statistics
Matches: 161, Mismatches: 14, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
174 160 0.99
175 1 0.01
ACGTcount: A:0.27, C:0.23, G:0.19, T:0.30
Consensus pattern (174 bp):
AATGTTAACACATCTTAGACCTACTATATCAATGCTCATACATATTCAAGTACATTATGTCATCA
TCGAGAGGCAAGAAGTCCATGGTCCCATCCTCAAAGAGACATAGGGGATCAGGTTCTTCCTCTGT
ACGTGCTACAACCGAAGTTCGGCACCCATTCCTTGAGTTTTCGC
Found at i:86440693 original size:45 final size:44
Alignment explanation
Indices: 86440627--86440712 Score: 145
Period size: 45 Copynumber: 1.9 Consensus size: 44
86440617 AACACTCCAG
86440627 CCTCAGAATCAAGCTCCGCATCCATATAACAGGAAGTTTCATCT
1 CCTCAGAATCAAGCTCCGCATCCATATAACAGGAAGTTTCATCT
* *
86440671 NCCTCAGAATCAAGCTCTGCATCCATATAACAGGGAGTTTCA
1 -CCTCAGAATCAAGCTCCGCATCCATATAACAGGAAGTTTCA
86440713 CCTCTTTCCC
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.31, C:0.28, G:0.15, T:0.24
Consensus pattern (44 bp):
CCTCAGAATCAAGCTCCGCATCCATATAACAGGAAGTTTCATCT
Found at i:86441975 original size:37 final size:37
Alignment explanation
Indices: 86441831--86441976 Score: 220
Period size: 37 Copynumber: 3.9 Consensus size: 37
86441821 GCTCAGACGA
* * *
86441831 AATCTCCACACGAAGTTATCGGGTCTTGACCCAGACAT
1 AATCTCCACACGTAGTCATCGGGTCTT-ACCCGGACAT
* *
86441869 AATCTCCACACATAGTCATCGGGTCTTACCCGAACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
86441906 ACTCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
*
86441943 AATCTCCACACGTAGTCATCGGGTCTCACCCGGA
1 AATCTCCACACGTAGTCATCGGGTCTTACCCGGA
86441977 ATATATTTCC
Statistics
Matches: 98, Mismatches: 10, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
37 74 0.76
38 24 0.24
ACGTcount: A:0.26, C:0.33, G:0.18, T:0.23
Consensus pattern (37 bp):
AATCTCCACACGTAGTCATCGGGTCTTACCCGGACAT
Found at i:86442260 original size:47 final size:47
Alignment explanation
Indices: 86442181--86442468 Score: 414
Period size: 47 Copynumber: 6.1 Consensus size: 47
86442171 TATATATATT
* * * *
86442181 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
86442228 CCACATTGGCCATTCGACCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
*
86442275 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCGCATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* *
86442322 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * *
86442369 CCACATTGGCCATTCGGCCTTATCACACATATGCATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
86442416 TCACATTAGCCATTCGGCCTTATCACATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
86442463 TCACAT
1 TCACAT
86442469 AAAATCCTAA
Statistics
Matches: 213, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 213 1.00
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:86442350 original size:22 final size:22
Alignment explanation
Indices: 86442274--86442350 Score: 68
Period size: 22 Copynumber: 3.4 Consensus size: 22
86442264 GCTCACATTC
*
86442274 ATCACATTGGCCATTCGGCCTT
1 ATCACATAGGCCATTCGGCCTT
* *
86442296 ATCACATATATG-CATGTTC-GCATT
1 ATCAC--ATAGGCCA--TTCGGCCTT
86442320 CATCACATAGGCCATTCGGCCTT
1 -ATCACATAGGCCATTCGGCCTT
86442343 ATCACATA
1 ATCACATA
86442351 TATGCATGTT
Statistics
Matches: 43, Mismatches: 5, Indels: 14
0.69 0.08 0.23
Matches are distributed among these distances:
22 16 0.37
23 10 0.23
24 9 0.21
25 8 0.19
ACGTcount: A:0.26, C:0.29, G:0.14, T:0.31
Consensus pattern (22 bp):
ATCACATAGGCCATTCGGCCTT
Found at i:86442353 original size:141 final size:141
Alignment explanation
Indices: 86442181--86442469 Score: 488
Period size: 141 Copynumber: 2.0 Consensus size: 141
86442171 TATATATATT
* *
86442181 TCACATTGACCATTCGGCTTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
* * *
86442246 CTTATCACACATATGCATGCTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATGCAT
66 CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
* *
86442311 GTTCGCATTCA
131 ATTCACATTCA
* * *
86442322 TCACATAGGCCATTCGGCCTTATCACATATATGCATGTTCATATTCACCACATTGGCCATTCGGC
1 TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
86442387 CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
66 CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
86442452 ATTCACATTCA
131 ATTCACATTCA
86442463 TCACATA
1 TCACATA
86442470 AAATCCTAAA
Statistics
Matches: 138, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
141 138 1.00
ACGTcount: A:0.28, C:0.29, G:0.11, T:0.32
Consensus pattern (141 bp):
TCACATAGACCATTCGGCCTTACCACATATATGCATGTTCATATTCACCACATTGGCCATTCGAC
CTTATCACACATATGCATGCTCACATTCATCACATTAGCCATTCGGCCTTATCACATATATACAC
ATTCACATTCA
Found at i:86459770 original size:24 final size:24
Alignment explanation
Indices: 86459741--86459788 Score: 96
Period size: 24 Copynumber: 2.0 Consensus size: 24
86459731 ACTCAAAGGA
86459741 AGAAATTATTTTTATGCATTTAAG
1 AGAAATTATTTTTATGCATTTAAG
86459765 AGAAATTATTTTTATGCATTTAAG
1 AGAAATTATTTTTATGCATTTAAG
86459789 GTTCGGCACT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.38, C:0.04, G:0.12, T:0.46
Consensus pattern (24 bp):
AGAAATTATTTTTATGCATTTAAG
Found at i:86460043 original size:29 final size:29
Alignment explanation
Indices: 86460011--86460071 Score: 70
Period size: 29 Copynumber: 2.1 Consensus size: 29
86460001 TAAAGTGATT
* *
86460011 TTGAGTAAAAATGTATATT-AGGGATTAAA
1 TTGAG-AAAAATATAAATTGAGGGATTAAA
* *
86460040 TTGAGAAAAGTATAAATTGAGGGGTTAAA
1 TTGAGAAAAATATAAATTGAGGGATTAAA
86460069 TTG
1 TTG
86460072 TGAGATTAAT
Statistics
Matches: 27, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 10 0.37
29 17 0.63
ACGTcount: A:0.43, C:0.00, G:0.25, T:0.33
Consensus pattern (29 bp):
TTGAGAAAAATATAAATTGAGGGATTAAA
Found at i:86461730 original size:8 final size:8
Alignment explanation
Indices: 86461717--86461741 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
86461707 AATTTTGAGT
86461717 ATTTTGTG
1 ATTTTGTG
86461725 ATTTTGTG
1 ATTTTGTG
86461733 ATTTTGTG
1 ATTTTGTG
86461741 A
1 A
86461742 ACAAGGGACT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.16, C:0.00, G:0.24, T:0.60
Consensus pattern (8 bp):
ATTTTGTG
Found at i:86462257 original size:43 final size:43
Alignment explanation
Indices: 86462217--86462315 Score: 110
Period size: 43 Copynumber: 2.3 Consensus size: 43
86462207 CTTGAGATAT
*
86462217 CATGTAAGACCATGTTTGAGACACTGACATCGATTAGAGATTA
1 CATGTAAGACCATATTTGAGACACTGACATCGATTAGAGATTA
* * * * * **
86462260 CGTGTAAGACCCTATTTGGGACAGTGGCATCGA-TATTTGATTA
1 CATGTAAGACCATATTTGAGACACTGACATCGATTA-GAGATTA
86462303 CATGTAAGACCAT
1 CATGTAAGACCAT
86462316 GTCATGGACG
Statistics
Matches: 45, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
42 2 0.04
43 43 0.96
ACGTcount: A:0.31, C:0.17, G:0.22, T:0.29
Consensus pattern (43 bp):
CATGTAAGACCATATTTGAGACACTGACATCGATTAGAGATTA
Found at i:86463827 original size:18 final size:17
Alignment explanation
Indices: 86463806--86463860 Score: 60
Period size: 18 Copynumber: 3.2 Consensus size: 17
86463796 ACAATTCTTT
86463806 TCTCTTCTTCTTTTCTCC
1 TCTCTTCTTCTTTTCT-C
*
86463824 TCTCTTCATCTATTT-TC
1 TCTCTTCTTCT-TTTCTC
86463841 TCTTCTTCTTCTTTTC-C
1 TC-TCTTCTTCTTTTCTC
86463858 TCT
1 TCT
86463861 ATAGCCCAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 8
0.76 0.05 0.19
Matches are distributed among these distances:
16 1 0.03
17 9 0.28
18 19 0.59
19 3 0.09
ACGTcount: A:0.04, C:0.35, G:0.00, T:0.62
Consensus pattern (17 bp):
TCTCTTCTTCTTTTCTC
Found at i:86471332 original size:40 final size:40
Alignment explanation
Indices: 86471279--86472181 Score: 1727
Period size: 40 Copynumber: 22.6 Consensus size: 40
86471269 GAGTTATATA
*
86471279 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471319 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471359 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471399 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471439 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471479 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471519 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471559 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471599 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471639 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471679 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471719 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471759 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471799 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471839 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471879 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471919 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471959 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86471999 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86472039 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
* *
86472079 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
* * * *
86472119 TTCGGACTAAGTCCCGAAGAGCATTCGTGCTGGTGTTATA
1 TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
86472159 TCCGGGCT-AGGTCCCGAAGAGCA
1 TCCGGGCTGA-GTCCCGAAGAGCA
86472182 ATCCTGCTAG
Statistics
Matches: 855, Mismatches: 7, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
39 1 0.00
40 854 1.00
ACGTcount: A:0.16, C:0.23, G:0.34, T:0.27
Consensus pattern (40 bp):
TCCGGGCTGAGTCCCGAAGAGCATTCGTGCTGGTGTTATG
Found at i:86472407 original size:25 final size:25
Alignment explanation
Indices: 86472357--86472407 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
86472347 TGTGTAACAA
* *
86472357 CAAATGAATAGGGGCACTATATGTG
1 CAAATGAATAGAGGCACTAGATGTG
*
86472382 CAAATGATTAGAGGCACTGAGA-GTG
1 CAAATGAATAGAGGCACT-AGATGTG
86472407 C
1 C
86472408 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 20 0.91
26 2 0.09
ACGTcount: A:0.35, C:0.14, G:0.29, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTAGATGTG
Found at i:86477262 original size:104 final size:104
Alignment explanation
Indices: 86477079--86477285 Score: 378
Period size: 104 Copynumber: 2.0 Consensus size: 104
86477069 AAAGGCTAAC
* *
86477079 GTGGTTGCGGACGCCTTAAGCCGGAAGTCATTGTTTGCTTTACGAGCGATGAACGTGCATTTGTC
1 GTGGTTGCGGACGCCTTAAGCCGGAAATCATTGTTTGCTTTACGAGCGATGAACGTGCACTTGTC
86477144 TGTTCTACCAGACAATGTGTTAGTAGCTGAATTAAAAGT
66 TGTTCTACCAGACAATGTGTTAGTAGCTGAATTAAAAGT
*
86477183 GTGGTTGCGGACGCCTTAAGCCGGAAATCATTGTTTGCTTTACGAGCGATGAATGTGCACTTGTC
1 GTGGTTGCGGACGCCTTAAGCCGGAAATCATTGTTTGCTTTACGAGCGATGAACGTGCACTTGTC
*
86477248 TGTTCTACCTGACAATGTGTTAGTAGCTGAATTAAAAG
66 TGTTCTACCAGACAATGTGTTAGTAGCTGAATTAAAAG
86477286 CCAAACCATT
Statistics
Matches: 99, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
104 99 1.00
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (104 bp):
GTGGTTGCGGACGCCTTAAGCCGGAAATCATTGTTTGCTTTACGAGCGATGAACGTGCACTTGTC
TGTTCTACCAGACAATGTGTTAGTAGCTGAATTAAAAGT
Found at i:86480436 original size:39 final size:40
Alignment explanation
Indices: 86480327--86480551 Score: 244
Period size: 40 Copynumber: 5.7 Consensus size: 40
86480317 TTGAATGATG
* * * * *
86480327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
86480367 TCC-GGACTAAGAT-CCGAAGGCATTTTTGCGAGATACTAAT
1 TCCGGGA-TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* * * *
86480407 TCCGGGCTAAG-CCCAAATGCATTGGTGCGAGTTACTAAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
86480446 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86480486 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
86480527 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGATAAGTCCCGAAGGCATTTG
86480552 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 22, Indels: 14
0.81 0.11 0.07
Matches are distributed among these distances:
39 33 0.21
40 112 0.72
41 11 0.07
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGATAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86480542 original size:80 final size:80
Alignment explanation
Indices: 86480327--86480551 Score: 269
Period size: 80 Copynumber: 2.8 Consensus size: 80
86480317 TTGAATGATG
* * * * *
86480327 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCAT
* *
86480390 TTTTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
* * * *
86480407 TCCGGGCTAAG-CCCAAATGCATTGGTGCGAGTTACTA-AATCCGGGATAAGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTAAGTCCCGAAGGCATT
*
86480470 TGTGCGAGTTACTAAA
65 TGTGCGAGATACTAAA
* *
86480486 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
86480551 G
66 G
86480552 AACGAGGAGC
Statistics
Matches: 122, Mismatches: 18, Indels: 10
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.02
79 55 0.45
80 63 0.52
81 2 0.02
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTAAGTCCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:86484525 original size:22 final size:22
Alignment explanation
Indices: 86484466--86484527 Score: 88
Period size: 22 Copynumber: 2.8 Consensus size: 22
86484456 TTAACAAGAT
* *
86484466 GGCTGAACGCCATAGACAGGAC
1 GGCTCAACGCCATAGATAGGAC
*
86484488 GGCTCAACACCATAGATAGGAC
1 GGCTCAACGCCATAGATAGGAC
*
86484510 GGCTCAACGCCGTAGATA
1 GGCTCAACGCCATAGATA
86484528 TCACAGCAAC
Statistics
Matches: 35, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 35 1.00
ACGTcount: A:0.32, C:0.27, G:0.27, T:0.13
Consensus pattern (22 bp):
GGCTCAACGCCATAGATAGGAC
Found at i:86486310 original size:27 final size:27
Alignment explanation
Indices: 86486278--86486344 Score: 82
Period size: 27 Copynumber: 2.5 Consensus size: 27
86486268 ACAAGGGCAT
* * *
86486278 TTCCTTCATAGTTCTCCATGCATACCA
1 TTCCTTCAGAGTTCACCATGAATACCA
*
86486305 TTCCTTTAGAGTTCACCATGAATACCA
1 TTCCTTCAGAGTTCACCATGAATACCA
86486332 TTCC-TCTAGAGTT
1 TTCCTTC-AGAGTT
86486345 TGCAACAAAG
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
26 1 0.03
27 33 0.97
ACGTcount: A:0.24, C:0.28, G:0.10, T:0.37
Consensus pattern (27 bp):
TTCCTTCAGAGTTCACCATGAATACCA
Found at i:86486482 original size:26 final size:27
Alignment explanation
Indices: 86486427--86486498 Score: 74
Period size: 26 Copynumber: 2.7 Consensus size: 27
86486417 TTTTTTTTAG
* ** * *
86486427 CCACAAAGGCTTTCACTTCATGGTTTT
1 CCACAAAAGCTTTCTTTTCATAGTTCT
86486454 CCACAAAAGCTTT-TTTTCATAGTTCT
1 CCACAAAAGCTTTCTTTTCATAGTTCT
* *
86486480 CCATAAAGGCTTTCTTTTC
1 CCACAAAAGCTTTCTTTTC
86486499 TAACGTGTTT
Statistics
Matches: 37, Mismatches: 7, Indels: 2
0.80 0.15 0.04
Matches are distributed among these distances:
26 20 0.54
27 17 0.46
ACGTcount: A:0.24, C:0.25, G:0.11, T:0.40
Consensus pattern (27 bp):
CCACAAAAGCTTTCTTTTCATAGTTCT
Found at i:86489470 original size:17 final size:16
Alignment explanation
Indices: 86489448--86489480 Score: 57
Period size: 17 Copynumber: 2.0 Consensus size: 16
86489438 TTTTCGTCAA
86489448 ATCTTTTACTCTATATC
1 ATCTTTTACTC-ATATC
86489465 ATCTTTTACTCATATC
1 ATCTTTTACTCATATC
86489481 TCCTACAAGC
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.24, C:0.24, G:0.00, T:0.52
Consensus pattern (16 bp):
ATCTTTTACTCATATC
Found at i:86505731 original size:6 final size:6
Alignment explanation
Indices: 86505701--86505775 Score: 82
Period size: 6 Copynumber: 12.3 Consensus size: 6
86505691 AAGAAACATT
* *
86505701 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
*
86505748 GTGACAGA ATCAGA ATCAGA ATCAGA AT
1 AT--CAGA ATCAGA ATCAGA ATCAGA AT
86505776 TAGGTGACAA
Statistics
Matches: 58, Mismatches: 6, Indels: 10
0.78 0.08 0.14
Matches are distributed among these distances:
5 2 0.03
6 51 0.88
7 4 0.07
8 1 0.02
ACGTcount: A:0.49, C:0.15, G:0.19, T:0.17
Consensus pattern (6 bp):
ATCAGA
Found at i:86505758 original size:25 final size:25
Alignment explanation
Indices: 86505727--86505820 Score: 98
Period size: 25 Copynumber: 3.5 Consensus size: 25
86505717 AAATGAGAAT
86505727 CAGAATCAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGAATCAGGTGA
86505752 CAGAATCAGAATCAGAATCAGAATTAGGTGA
1 CAGAATCAGAATCAGAATC------AGGTGA
* * *
86505783 CAAAATCAGAATCAGTATCAGGTAA
1 CAGAATCAGAATCAGAATCAGGTGA
*
86505808 CAGAATTAGAATC
1 CAGAATCAGAATC
86505821 GTAATGTGAA
Statistics
Matches: 58, Mismatches: 5, Indels: 12
0.77 0.07 0.16
Matches are distributed among these distances:
25 35 0.60
31 23 0.40
ACGTcount: A:0.46, C:0.15, G:0.20, T:0.19
Consensus pattern (25 bp):
CAGAATCAGAATCAGAATCAGGTGA
Found at i:86505760 original size:31 final size:31
Alignment explanation
Indices: 86505722--86505803 Score: 137
Period size: 31 Copynumber: 2.6 Consensus size: 31
86505712 AATCAAAATG
86505722 AGAATCAGAATCAGAATCAGAATCAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTGAC
*
86505753 AGAATCAGAATCAGAATCAGAATTAGGTGAC
1 AGAATCAGAATCAGAATCAGAATCAGGTGAC
* *
86505784 AAAATCAGAATCAGTATCAG
1 AGAATCAGAATCAGAATCAG
86505804 GTAACAGAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 48 1.00
ACGTcount: A:0.46, C:0.15, G:0.21, T:0.18
Consensus pattern (31 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGAC
Found at i:86505981 original size:27 final size:26
Alignment explanation
Indices: 86505944--86506051 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
86505934 AGCATGGCTG
* *
86505944 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
*
86505970 CCAGATACAGATATTGTGGCAGAGCCT
1 CCAGA-ACAGATATTGTGGCAGAGCCA
* *
86505997 CCAGAATAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
* *
86506024 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGGCAGAGCCA
86506051 C
1 C
86506052 TTAACAGAAT
Statistics
Matches: 70, Mismatches: 9, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 11 0.16
27 52 0.74
28 7 0.10
ACGTcount: A:0.36, C:0.21, G:0.23, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:86506034 original size:54 final size:53
Alignment explanation
Indices: 86505944--86506049 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
86505934 AGCATGGCTG
* * * *
86505944 CCAGAACAGATATTGTGACAGAGTCACCAGATACAGATATTGTGGCAGAGCCT
1 CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCT
* * *
86505997 CCAGAATAGATATTTGTGGCATAGCCACCAGAAACAGATAATGTGGCAAAGCC
1 CCAGAACAGATA-TTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCC
86506050 ACTTAACAGA
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 11 0.24
54 34 0.76
ACGTcount: A:0.36, C:0.21, G:0.24, T:0.20
Consensus pattern (53 bp):
CCAGAACAGATATTGTGACAGAGCCACCAGAAACAGATAATGTGGCAAAGCCT
Found at i:86506257 original size:22 final size:22
Alignment explanation
Indices: 86506209--86506260 Score: 59
Period size: 22 Copynumber: 2.4 Consensus size: 22
86506199 GTAAATACGT
* *
86506209 TTGGCACGAAGCCATAGTCATG
1 TTGGCACAAAGCCATAGTCAGG
* * *
86506231 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAGG
86506253 TTGGCACA
1 TTGGCACA
86506261 GATCCATCGA
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.31, C:0.21, G:0.25, T:0.23
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAGG
Found at i:86506396 original size:27 final size:26
Alignment explanation
Indices: 86506358--86506437 Score: 106
Period size: 27 Copynumber: 3.0 Consensus size: 26
86506348 ATCGGTTAAT
* * *
86506358 AGATATTATGGCAAAGTCACCAGATAC
1 AGATATTGTGGCAGAGCCACCAGA-AC
*
86506385 AGATATTGTGGCAGAGCCTCCAGAAC
1 AGATATTGTGGCAGAGCCACCAGAAC
86506411 AGATATTTGTGGCAGAGCCACCAGAAC
1 AGATA-TTGTGGCAGAGCCACCAGAAC
86506438 GCTTCCTCCA
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.15
27 40 0.85
ACGTcount: A:0.35, C:0.21, G:0.24, T:0.20
Consensus pattern (26 bp):
AGATATTGTGGCAGAGCCACCAGAAC
Found at i:86506717 original size:27 final size:27
Alignment explanation
Indices: 86506661--86506916 Score: 343
Period size: 27 Copynumber: 9.5 Consensus size: 27
86506651 GGGTAAAATG
* * * *
86506661 GTAATTTTACCCCAC-AGGGTATCTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
86506687 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
86506714 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * * *
86506741 ATAATTCTACCTTATAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
86506768 GTAATTCAACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
86506795 GTAATTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* * *
86506822 GTAATTCTACCCTATAGGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCA
*
86506849 GTATTTCTACCCTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
86506876 GTATTTCTACCTTACAAGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCA
* *
86506903 GTAATGCTAGCCTA
1 GTAATTCTACCCTA
86506917 TAGATATGAG
Statistics
Matches: 203, Mismatches: 26, Indels: 1
0.88 0.11 0.00
Matches are distributed among these distances:
26 13 0.06
27 190 0.94
ACGTcount: A:0.27, C:0.21, G:0.17, T:0.35
Consensus pattern (27 bp):
GTAATTCTACCCTACAAGGGTATTTCA
Found at i:86506772 original size:81 final size:81
Alignment explanation
Indices: 86506677--86506919 Score: 387
Period size: 81 Copynumber: 3.0 Consensus size: 81
86506667 TTACCCCACA
* *
86506677 GGGTATCTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAA
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAG
*
86506742 TAATTCTACCTTATAG
66 TAATTCTACCCTATAG
* * *
86506758 GGGTATTTCAGTAATTCAACCCTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAG
86506823 TAATTCTACCCTATAG
66 TAATTCTACCCTATAG
* * *
86506839 GGGTATTTCGGTATTTCTACCCTACAAGGGTATTTCAGTATTTCTACCTTACAAGGGTATTTCAG
1 GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAG
* *
86506904 TAATGCTAGCCTATAG
66 TAATTCTACCCTATAG
86506920 ATATGAGATT
Statistics
Matches: 148, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
81 148 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (81 bp):
GGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAAGGGTATTTCAG
TAATTCTACCCTATAG
Found at i:86514782 original size:37 final size:37
Alignment explanation
Indices: 86514741--86514813 Score: 119
Period size: 37 Copynumber: 2.0 Consensus size: 37
86514731 CCCTGAACCC
*
86514741 GAGACAGTCGCCGGAGTCGAACACGAGGTGTTAACAA
1 GAGACAGTCGCCGGAGTCGAACACAAGGTGTTAACAA
* *
86514778 GAGACCGTCGTCGGAGTCGAACACAAGGTGTTAACA
1 GAGACAGTCGCCGGAGTCGAACACAAGGTGTTAACA
86514814 GACTTCAAAC
Statistics
Matches: 33, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.32, C:0.22, G:0.32, T:0.15
Consensus pattern (37 bp):
GAGACAGTCGCCGGAGTCGAACACAAGGTGTTAACAA
Found at i:86515678 original size:27 final size:26
Alignment explanation
Indices: 86515661--86515730 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 26
86515651 ATATTAAGTC
86515661 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTCAGTGCTATAT-ATCAACT
*
86515688 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTCAGTGCTATAT-ATC-AACT
*
86515716 CGCACACTTAGTGCT
1 CGCACACTCAGTGCT
86515731 GTACAATTTA
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
27 22 0.54
28 19 0.46
ACGTcount: A:0.31, C:0.29, G:0.13, T:0.27
Consensus pattern (26 bp):
CGCACACTCAGTGCTATATATCAACT
Found at i:86515724 original size:28 final size:28
Alignment explanation
Indices: 86515661--86515755 Score: 129
Period size: 28 Copynumber: 3.4 Consensus size: 28
86515651 ATATTAAGTC
*
86515661 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
86515688 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
86515716 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
86515745 CGCACACTTAG
1 CGCACACTTAG
86515756 CGCCAATCTC
Statistics
Matches: 61, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 22 0.36
28 23 0.38
29 16 0.26
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:86530117 original size:17 final size:18
Alignment explanation
Indices: 86530090--86530132 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
86530080 GGTGTGTGAC
*
86530090 CTTTTAAAAGTT-GAAAA
1 CTTTTATAAGTTCGAAAA
* *
86530107 TTTTTATAAGTTCTAAAA
1 CTTTTATAAGTTCGAAAA
86530125 CTTTTATA
1 CTTTTATA
86530133 TGTTATCAAT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 10 0.48
18 11 0.52
ACGTcount: A:0.40, C:0.07, G:0.07, T:0.47
Consensus pattern (18 bp):
CTTTTATAAGTTCGAAAA
Found at i:86530834 original size:49 final size:47
Alignment explanation
Indices: 86530778--86530909 Score: 201
Period size: 49 Copynumber: 2.8 Consensus size: 47
86530768 GTGCTAATTA
* * *
86530778 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTTTTGGATAGGAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATA--AGT
*
86530827 TACCTTGATTTGGCTACAGGCCATGGTATAGGTACTCTGGGATAAGT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATAAGT
*
86530874 TACCTTGATTTGGCTACGGACCATGGTATAGGTACT
1 TACCTTGATTTGGCTACGGGCCATGGTATAGGTACT
86530910 TATCAATTGA
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
47 37 0.48
49 40 0.52
ACGTcount: A:0.22, C:0.16, G:0.28, T:0.34
Consensus pattern (47 bp):
TACCTTGATTTGGCTACGGGCCATGGTATAGGTACTCTGGGATAAGT
Found at i:86539764 original size:46 final size:45
Alignment explanation
Indices: 86539706--86539932 Score: 213
Period size: 46 Copynumber: 4.9 Consensus size: 45
86539696 CCCGAACAAG
* * * *
86539706 TGACCAGGCACTATTGTTCGATTTATGTATGTTCAACACTAACGAA
1 TGACCAGACACTATTATTCGATTTGTGTAGGTTCAAC-CTAACGAA
* * * * **
86539752 TGACTAGACACTATTATCCGATTTGTATAGGTTCAACCTTAATGGG
1 TGACCAGACACTATTATTCGATTTGTGTAGGTTCAACC-TAACGAA
* * ** *
86539798 TGACCAGGCACTATTGTTCGATTCATGTACGTTCAACCCTAACGAA
1 TGACCAGACACTATTATTCGATTTGTGTAGGTTCAA-CCTAACGAA
* *
86539844 TGACTAGACACTATTA-TCTGATTTGTGTAGGTTCAACCTTAACGAG
1 TGACCAGACACTATTATTC-GATTTGTGTAGGTTCAACC-TAACGAA
* * *
86539890 TGGCCAGGCACTATTATCCGATTTGTGTAGGTTCAACCCTAAC
1 TGACCAGACACTATTATTCGATTTGTGTAGGTTCAA-CCTAAC
86539933 AGGTGGTCGG
Statistics
Matches: 143, Mismatches: 32, Indels: 12
0.76 0.17 0.06
Matches are distributed among these distances:
45 5 0.03
46 133 0.93
47 5 0.03
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (45 bp):
TGACCAGACACTATTATTCGATTTGTGTAGGTTCAACCTAACGAA
Found at i:86539844 original size:92 final size:92
Alignment explanation
Indices: 86539704--86539932 Score: 350
Period size: 92 Copynumber: 2.5 Consensus size: 92
86539694 AGCCCGAACA
* *
86539704 AGTGACCAGGCACTATTGTTCGATTTATGTATGTTCAACACTAACGAATGACTAGACACTATTAT
1 AGTGACCAGGCACTATTGTTCGATTTATGTACGTTCAACCCTAACGAATGACTAGACACTATTAT
*
86539769 CCGATTTGTATAGGTTCAACCTTAATG
66 CCGATTTGTATAGGTTCAACCTTAACG
* *
86539796 GGTGACCAGGCACTATTGTTCGATTCATGTACGTTCAACCCTAACGAATGACTAGACACTATTAT
1 AGTGACCAGGCACTATTGTTCGATTTATGTACGTTCAACCCTAACGAATGACTAGACACTATTAT
* *
86539861 CTGATTTGTGTAGGTTCAACCTTAACG
66 CCGATTTGTATAGGTTCAACCTTAACG
* * * * *
86539888 AGTGGCCAGGCACTATTATCCGATTTGTGTAGGTTCAACCCTAAC
1 AGTGACCAGGCACTATTGTTCGATTTATGTACGTTCAACCCTAAC
86539933 AGGTGGTCGG
Statistics
Matches: 123, Mismatches: 14, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
92 123 1.00
ACGTcount: A:0.28, C:0.21, G:0.19, T:0.32
Consensus pattern (92 bp):
AGTGACCAGGCACTATTGTTCGATTTATGTACGTTCAACCCTAACGAATGACTAGACACTATTAT
CCGATTTGTATAGGTTCAACCTTAACG
Found at i:86539946 original size:46 final size:45
Alignment explanation
Indices: 86539760--86540065 Score: 218
Period size: 46 Copynumber: 6.7 Consensus size: 45
86539750 AATGACTAGA
* * * *
86539760 CACTATTATCCGATTTGTATAGGTTCAACCTTAATGGGTGACCAGG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAA-CGGTGGCCAGG
* * * * * * * * *
86539806 CACTATTGTTCGATTCATGTACGTTCAACCCTAACGAATGACTAGA
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACG-GTGGCCAGG
* *
86539852 CACTATTATCTGATTTGTGTAGGTTCAACCTTAACGAGTGGCCAGG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAACG-GTGGCCAGG
* * * *
86539898 CACTATTATCCGATTTGTGTAGGTTCAACCCTAACAGGTGGTCGGG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAAC-GGTGGCCAGG
* * * * *
86539944 CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAGGTGATCC-TG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAA-CGGTG-GCCAGG
* * ** * * *
86539990 CATTAATATTTGATTCGTGTAGGTTCAACCTTAATGGGTGACCAAG
1 CACTATTATCCGATTCGTGTAGGTTCAACCTTAA-CGGTGGCCAGG
* * * * *
86540036 CATTGTTATCTGATTCATGTAGGTTTAACC
1 CACTATTATCCGATTCGTGTAGGTTCAACC
86540066 CAAATAGGTA
Statistics
Matches: 209, Mismatches: 46, Indels: 10
0.79 0.17 0.04
Matches are distributed among these distances:
45 3 0.01
46 204 0.98
47 2 0.01
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.34
Consensus pattern (45 bp):
CACTATTATCCGATTCGTGTAGGTTCAACCTTAACGGTGGCCAGG
Found at i:86539948 original size:92 final size:92
Alignment explanation
Indices: 86539685--86539977 Score: 329
Period size: 92 Copynumber: 3.2 Consensus size: 92
86539675 CTATTTGTTA
* ** * * * * * *
86539685 TGTAGGTTCAGCCCGAACAAGTGACCAGGCACTATTGTTCGATTTATGTATGTTCAACACTAACG
1 TGTAGGTTCAACCTTAACGAGTGACCAGGCACTATTATCCGATTCATGTACGTTCAACCCTAACG
*
86539750 AATGACTAGACACTATTATCCGATTTG
66 AATGACTAGACACTATTATCTGATTTG
* * * * *
86539777 TATAGGTTCAACCTTAATGGGTGACCAGGCACTATTGTTCGATTCATGTACGTTCAACCCTAACG
1 TGTAGGTTCAACCTTAACGAGTGACCAGGCACTATTATCCGATTCATGTACGTTCAACCCTAACG
86539842 AATGACTAGACACTATTATCTGATTTG
66 AATGACTAGACACTATTATCTGATTTG
* ** *
86539869 TGTAGGTTCAACCTTAACGAGTGGCCAGGCACTATTATCCGATTTGTGTAGGTTCAACCCTAAC-
1 TGTAGGTTCAACCTTAACGAGTGACCAGGCACTATTATCCGATTCATGTACGTTCAACCCTAACG
* * * * *
86539933 AGGTG-GTCGGGCACTATTATCTGATTCG
66 A-ATGACT-AGACACTATTATCTGATTTG
*
86539961 TGTAGGTTTAACCTTAA
1 TGTAGGTTCAACCTTAA
86539978 TAGGTGATCC
Statistics
Matches: 173, Mismatches: 26, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
91 2 0.01
92 171 0.99
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32
Consensus pattern (92 bp):
TGTAGGTTCAACCTTAACGAGTGACCAGGCACTATTATCCGATTCATGTACGTTCAACCCTAACG
AATGACTAGACACTATTATCTGATTTG
Found at i:86540010 original size:92 final size:92
Alignment explanation
Indices: 86539760--86540074 Score: 251
Period size: 92 Copynumber: 3.4 Consensus size: 92
86539750 AATGACTAGA
* * * * * * * * * *
86539760 CACTATTATCCGATTTGTATAGGTTCAACCTTAATGGGTGACCAGGCACTATTGTTCGATTCATG
1 CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAGGTGGCCAGGCACTAATATCCGATTCGTG
* * *
86539825 TACGTTCAACCCTAAC-GAATGA-CTAG
66 TAGGTTCAACCCTAACAG-GTGACCAAG
* * * * *
86539851 ACACTATTATCTGATTTGTGTAGGTTCAACCTTAA-CGAGTGGCCAGGCACTATTATCCGATTTG
1 -CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAG-GTGGCCAGGCACTAATATCCGATTCG
** **
86539915 TGTAGGTTCAACCCTAACAGGTGGTCGGG
64 TGTAGGTTCAACCCTAACAGGTGACCAAG
* * * **
86539944 CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAGGTGATCC-TGCATTAATATTTGATTCGT
1 CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAGGTG-GCCAGGCACTAATATCCGATTCGT
* **
86540008 GTAGGTTCAACCTTAATGGGTGACCAAG
65 GTAGGTTCAACCCTAACAGGTGACCAAG
* * * **
86540036 CATTGTTATCTGATTCATGTAGGTTTAACCCAAATAGGT
1 CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAGGT
86540075 AACTAGACAC
Statistics
Matches: 183, Mismatches: 35, Indels: 10
0.80 0.15 0.04
Matches are distributed among these distances:
91 1 0.01
92 176 0.96
93 6 0.03
ACGTcount: A:0.26, C:0.19, G:0.21, T:0.34
Consensus pattern (92 bp):
CACTATTATCTGATTCGTGTAGGTTTAACCTTAATAGGTGGCCAGGCACTAATATCCGATTCGTG
TAGGTTCAACCCTAACAGGTGACCAAG
Found at i:86542037 original size:63 final size:66
Alignment explanation
Indices: 86541860--86542040 Score: 174
Period size: 68 Copynumber: 2.8 Consensus size: 66
86541850 GATGGTATGT
** * * * * *
86541860 AGCTAGGTCACATGTATGGTGCTGAGTGCACATCATGTGTACAAGAGAGCTACGAGACATTATGA
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAGA-ATTATAA
86541925 TG
65 TG
** * * *
86541927 TAGCTAGGTCGTATGGGTGATACTATGTGTACACCATGTAG-AGAAGAGAGCTACGAG-A-TA-A
1 -AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGT-GTACAAGAGAGCTACGAGAATTATA
86541988 ACTG
64 A-TG
*
86541992 -GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGTGTACAAGAGAGC
1 AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGC
86542041 CAAAATTATG
Statistics
Matches: 92, Mismatches: 18, Indels: 11
0.76 0.15 0.09
Matches are distributed among these distances:
62 1 0.01
63 41 0.45
64 1 0.01
65 4 0.04
66 1 0.01
68 43 0.47
69 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (66 bp):
AGCTAGGTCACATGGGTGGTACTAAGTGTACACCATGTGTACAAGAGAGCTACGAGAATTATAAT
G
Found at i:86546720 original size:17 final size:17
Alignment explanation
Indices: 86546694--86546747 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 17
86546684 AATTGAATCC
86546694 AATTTAATTTTAATTTT
1 AATTTAATTTTAATTTT
* * *
86546711 AATTTTA-TTTAATATG
1 AATTTAATTTTAATTTT
*
86546727 AAATTAATTTTAAATTTT
1 AATTTAATTTT-AATTTT
86546745 AAT
1 AAT
86546748 AATTTAAAAA
Statistics
Matches: 27, Mismatches: 8, Indels: 3
0.71 0.21 0.08
Matches are distributed among these distances:
16 12 0.44
17 9 0.33
18 6 0.22
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (17 bp):
AATTTAATTTTAATTTT
Found at i:86567329 original size:40 final size:40
Alignment explanation
Indices: 86567267--86567444 Score: 211
Period size: 40 Copynumber: 4.5 Consensus size: 40
86567257 AAGCCAAGTA
* * * *
86567267 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCACTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCACACAAATG
* * *
86567306 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
*
86567346 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
* *
86567386 CCTTCGGGACTTAGCCCGGA-ACTAGTCACT-AGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCA-CACAAATG
86567426 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
86567445 TTAGCATCCA
Statistics
Matches: 124, Mismatches: 11, Indels: 7
0.87 0.08 0.05
Matches are distributed among these distances:
39 13 0.10
40 111 0.90
ACGTcount: A:0.25, C:0.29, G:0.24, T:0.22
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCACACAAATG
Found at i:86570896 original size:6 final size:6
Alignment explanation
Indices: 86570878--86571026 Score: 92
Period size: 6 Copynumber: 24.3 Consensus size: 6
86570868 AAGAAACATT
*
86570878 ATCAGA A-CTAGA ATCAGA ATCAGA ATCAGA ATCAG- GTGACAGA ATCAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA
* * * *
86570927 ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAA ATCAGA ATCAGT ATCACA
1 ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
** ** * *
86570976 ATCCCA A-CCCA ATCAGA ATCAGT ATCAGGTA A-CAGA ATCAAAA ATCAGA
1 ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATC-AGA ATCAGA
86571025 AT
1 AT
86571027 GTGAATGCAA
Statistics
Matches: 114, Mismatches: 16, Indels: 26
0.73 0.10 0.17
Matches are distributed among these distances:
5 11 0.10
6 85 0.75
7 15 0.13
8 3 0.03
ACGTcount: A:0.47, C:0.19, G:0.15, T:0.18
Consensus pattern (6 bp):
ATCAGA
Found at i:86570925 original size:31 final size:31
Alignment explanation
Indices: 86570862--86571026 Score: 160
Period size: 31 Copynumber: 5.4 Consensus size: 31
86570852 TAACCCATTA
* * *
86570862 CAGAATAAGAAACATTATCA-G-AACTAGAAT
1 CAGAATCAGAATCAGTATCAGGTAAC-AGAAT
* *
86570892 CAGAATCAGAATCAGAATCAGGTGACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
86570923 CAGAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
* * **
86570954 CAAAATCAGAATCAGTATCA--CAATCCCAA-
1 CAGAATCAGAATCAGTATCAGGTAA-CAGAAT
**
86570983 CCCAATCAGAATCAGTATCAGGTAACAGAAT
1 CAGAATCAGAATCAGTATCAGGTAACAGAAT
*
86571014 CAAAAATCAGAAT
1 C-AGAATCAGAAT
86571027 GTGAATGCAA
Statistics
Matches: 110, Mismatches: 18, Indels: 12
0.79 0.13 0.09
Matches are distributed among these distances:
29 20 0.18
30 22 0.20
31 57 0.52
32 11 0.10
ACGTcount: A:0.48, C:0.19, G:0.15, T:0.18
Consensus pattern (31 bp):
CAGAATCAGAATCAGTATCAGGTAACAGAAT
Found at i:86570951 original size:25 final size:25
Alignment explanation
Indices: 86570890--86570968 Score: 85
Period size: 25 Copynumber: 3.2 Consensus size: 25
86570880 CAGAACTAGA
86570890 ATCA-GAATCAGAATCAGAATCAGGT
1 ATCAGGAATCAGAATCAGAATCA-GT
86570915 GA-CA-GAATCAGAATCAGAATCAGT
1 -ATCAGGAATCAGAATCAGAATCAGT
* *
86570939 ATCAGGTAA-CAGAATCAAAATCAGA
1 ATCAGG-AATCAGAATCAGAATCAGT
86570964 ATCAG
1 ATCAG
86570969 TATCACAATC
Statistics
Matches: 48, Mismatches: 2, Indels: 7
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.02
24 4 0.08
25 40 0.83
26 3 0.06
ACGTcount: A:0.47, C:0.16, G:0.19, T:0.18
Consensus pattern (25 bp):
ATCAGGAATCAGAATCAGAATCAGT
Found at i:86571005 original size:60 final size:60
Alignment explanation
Indices: 86570926--86571049 Score: 196
Period size: 60 Copynumber: 2.1 Consensus size: 60
86570916 ACAGAATCAG
*
86570926 AATCAGAATCAGTATCAGGTAACAGAATC-AAAATCAGAATCAGTATCACAATCCCAACCC
1 AATCAGAATCAGTATCAGGTAACAGAATCAAAAATCAGAATCAGAAT-ACAATCCCAACCC
** *
86570986 AATCAGAATCAGTATCAGGTAACAGAATCAAAAATCAGAATGTGAATGCAATCCCAACCC
1 AATCAGAATCAGTATCAGGTAACAGAATCAAAAATCAGAATCAGAATACAATCCCAACCC
86571046 AATC
1 AATC
86571050 CAGCCTATAA
Statistics
Matches: 59, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
60 45 0.76
61 14 0.24
ACGTcount: A:0.45, C:0.23, G:0.13, T:0.19
Consensus pattern (60 bp):
AATCAGAATCAGTATCAGGTAACAGAATCAAAAATCAGAATCAGAATACAATCCCAACCC
Found at i:86571197 original size:27 final size:26
Alignment explanation
Indices: 86571164--86571264 Score: 94
Period size: 27 Copynumber: 3.8 Consensus size: 26
86571154 CTCAGTTATT
* *
86571164 AGATATTGTGATAGAGTCACCAGATAC
1 AGATATTGTGACAGAGCCACCAGA-AC
* *
86571191 AGGTATTGTGGCAGAGCCACCAGAAC
1 AGATATTGTGACAGAGCCACCAGAAC
* *
86571217 AGATATTTGTGGCATAGCCACCAGAAAC
1 AGATA-TTGTGACAGAGCCACCAG-AAC
* * *
86571245 AGATAATGTGGCAAAGCCAC
1 AGATATTGTGACAGAGCCAC
86571265 TTAACAGAAT
Statistics
Matches: 64, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
26 6 0.09
27 50 0.78
28 8 0.12
ACGTcount: A:0.36, C:0.20, G:0.25, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACAGAGCCACCAGAAC
Found at i:86571451 original size:22 final size:22
Alignment explanation
Indices: 86571423--86571475 Score: 65
Period size: 22 Copynumber: 2.4 Consensus size: 22
86571413 GCAAATACGT
86571423 TTGGCACACG-GCCATA-ATCAGG
1 TTGGCACA-GAGCCATATAT-AGG
86571445 TTGGCACAGAGCCATATATAGG
1 TTGGCACAGAGCCATATATAGG
*
86571467 TTGACACAG
1 TTGGCACAG
86571476 CATAATCAGA
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
21 1 0.04
22 25 0.89
23 2 0.07
ACGTcount: A:0.30, C:0.23, G:0.26, T:0.21
Consensus pattern (22 bp):
TTGGCACAGAGCCATATATAGG
Found at i:86571969 original size:53 final size:54
Alignment explanation
Indices: 86571912--86572028 Score: 139
Period size: 54 Copynumber: 2.2 Consensus size: 54
86571902 GGGCAAAATG
* **
86571912 GTAATTTTACCCCACAA-GGTATCTCGGTAATTCCAC-CCTACAGGGGTATTTTA
1 GTAATTTTACCCCACAAGGGTATCTCGATAATTCCACAAAT-CAGGGGTATTTTA
* * * * *
86571965 GTAATTTTACCCTACAAGGGTATTTCGATAATTTCACAAATTAGGGGTATTTTG
1 GTAATTTTACCCCACAAGGGTATCTCGATAATTCCACAAATCAGGGGTATTTTA
86572019 GTAATTTTAC
1 GTAATTTTAC
86572029 AAACCAGGGG
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
53 16 0.30
54 37 0.69
55 1 0.02
ACGTcount: A:0.28, C:0.18, G:0.17, T:0.37
Consensus pattern (54 bp):
GTAATTTTACCCCACAAGGGTATCTCGATAATTCCACAAATCAGGGGTATTTTA
Found at i:86571996 original size:27 final size:27
Alignment explanation
Indices: 86571913--86571998 Score: 86
Period size: 27 Copynumber: 3.2 Consensus size: 27
86571903 GGCAAAATGG
* * *
86571913 TAATTTTACCCCACAA-GGTATCTCGG
1 TAATTTTACCCTACAAGGGTATTTCGA
** * *
86571939 TAATTCCACCCTACAGGGGTATTT-TA
1 TAATTTTACCCTACAAGGGTATTTCGA
86571965 GTAATTTTACCCTACAAGGGTATTTCGA
1 -TAATTTTACCCTACAAGGGTATTTCGA
86571993 TAATTT
1 TAATTT
86571999 CACAAATTAG
Statistics
Matches: 46, Mismatches: 11, Indels: 5
0.74 0.18 0.08
Matches are distributed among these distances:
26 12 0.26
27 33 0.72
28 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.15, T:0.36
Consensus pattern (27 bp):
TAATTTTACCCTACAAGGGTATTTCGA
Found at i:86572040 original size:54 final size:53
Alignment explanation
Indices: 86571953--86572107 Score: 143
Period size: 54 Copynumber: 2.9 Consensus size: 53
86571943 TCCACCCTAC
* **
86571953 AGGGGTATTTTAGTAATTTTACCCTA-CAAGGGTATTTCGATAATTTCACAAATT
1 AGGGGTATTTTGGTAATTTTA-CAAACCAAGGGTATTTCGATAATTTCACAAA-T
* * * * ***
86572007 AGGGGTATTTTGGTAATTTTACAAACCAGGGGTATTTTGGTAATTTTATTGAT
1 AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGATAATTTCACAAAT
* **
86572060 CGAGGGTATTTTGGTAATTTTGTAAACCAAGGGTATTTC-AGTAATTTC
1 AG-GGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGA-TAATTTC
86572108 GTAAATCGAG
Statistics
Matches: 81, Mismatches: 17, Indels: 6
0.78 0.16 0.06
Matches are distributed among these distances:
53 4 0.05
54 77 0.95
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (53 bp):
AGGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGATAATTTCACAAAT
Found at i:86572053 original size:27 final size:27
Alignment explanation
Indices: 86571952--86572106 Score: 116
Period size: 27 Copynumber: 5.7 Consensus size: 27
86571942 TTCCACCCTA
* **
86571952 CAGGGGTATTTTAGTAATTTTACCCTA-
1 CAGGGGTATTTTGGTAATTTTA-CAAAC
* * * * *
86571979 CAAGGGTATTTCGATAATTTCACAAAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
*
86572006 TAGGGGTATTTTGGTAATTTTACAAAC
1 CAGGGGTATTTTGGTAATTTTACAAAC
*** *
86572033 CAGGGGTATTTTGGTAATTTTATTGAT
1 CAGGGGTATTTTGGTAATTTTACAAAC
**
86572060 C-GAGGGTATTTTGGTAATTTTGTAAAC
1 CAG-GGGTATTTTGGTAATTTTACAAAC
* **
86572087 CAAGGGTATTTCAGTAATTT
1 CAGGGGTATTTTGGTAATTT
86572107 CGTAAATCGA
Statistics
Matches: 100, Mismatches: 25, Indels: 6
0.76 0.19 0.05
Matches are distributed among these distances:
26 3 0.03
27 97 0.97
ACGTcount: A:0.28, C:0.10, G:0.21, T:0.41
Consensus pattern (27 bp):
CAGGGGTATTTTGGTAATTTTACAAAC
Found at i:86572111 original size:27 final size:27
Alignment explanation
Indices: 86572062--86572121 Score: 75
Period size: 27 Copynumber: 2.2 Consensus size: 27
86572052 TTATTGATCG
** *
86572062 AGGGTATTTTGGTAATTTTGTAAACCA
1 AGGGTATTTCAGTAATTTCGTAAACCA
* *
86572089 AGGGTATTTCAGTAATTTCGTAAATCG
1 AGGGTATTTCAGTAATTTCGTAAACCA
86572116 AGGGTA
1 AGGGTA
86572122 AAATGGTAAT
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.30, C:0.08, G:0.25, T:0.37
Consensus pattern (27 bp):
AGGGTATTTCAGTAATTTCGTAAACCA
Found at i:86572116 original size:54 final size:53
Alignment explanation
Indices: 86571979--86572148 Score: 153
Period size: 54 Copynumber: 3.2 Consensus size: 53
86571969 TTTTACCCTA
* * **
86571979 CAAGGGTATTTCGATAATTTCACAAAT-TAGGGGTATTTTGGTAATTTTACAAAC
1 CAAGGGTATTTCG-TAATTTCATAAATCGA-GGGTATTTTGGTAATTTTGTAAAC
* * * **
86572033 CAGGGGTATTTTGGTAATTTTATTGATCGAGGGTATTTTGGTAATTTTGTAAAC
1 CAAGGGTA-TTTCGTAATTTCATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
* *** * *
86572087 CAAGGGTATTTCAGTAATTTCGTAAATCGAGGGTAAAATGGTAATTCTGTAAAT
1 CAAGGGTATTTC-GTAATTTCATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
*
86572141 CAACGGTA
1 CAAGGGTA
86572149 AGATGGTAAT
Statistics
Matches: 92, Mismatches: 21, Indels: 6
0.77 0.18 0.05
Matches are distributed among these distances:
53 3 0.03
54 84 0.91
55 5 0.05
ACGTcount: A:0.31, C:0.09, G:0.22, T:0.37
Consensus pattern (53 bp):
CAAGGGTATTTCGTAATTTCATAAATCGAGGGTATTTTGGTAATTTTGTAAAC
Found at i:86572156 original size:81 final size:81
Alignment explanation
Indices: 86572109--86572337 Score: 341
Period size: 81 Copynumber: 2.8 Consensus size: 81
86572099 AGTAATTTCG
* * *
86572109 TAAATCGAGGGTAAAATGGTAATTCTGTAAATCAACGGTAAGATGGTAATTCTACAAATCGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAGATGGTAATTCTATAAATCGAGGG
86572174 TAAAATGGTAATTCTA
66 TAAAATGGTAATTCTA
* * * *
86572190 TAAATCGAGGGTAAAATGGTAATTCTACAAATCGAGGGTAAGACGGTAATTCTATAAATCGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAGATGGTAATTCTATAAATCGAGGG
86572255 TAAAATGGTAATTCTA
66 TAAAATGGTAATTCTA
*** * * *
86572271 TAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTACTTTGGTAATTTTACAAGTCGAGGG
1 TAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAGATGGTAATTCTATAAATCGAGGG
86572336 TA
66 TA
86572338 TTTCAATAAT
Statistics
Matches: 132, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
81 132 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (81 bp):
TAAATCGAGGGTAAAATGGTAATTCTATAAATCAAAGGTAAGATGGTAATTCTATAAATCGAGGG
TAAAATGGTAATTCTA
Found at i:86572321 original size:27 final size:27
Alignment explanation
Indices: 86572109--86572303 Score: 318
Period size: 27 Copynumber: 7.2 Consensus size: 27
86572099 AGTAATTTCG
*
86572109 TAAATCGAGGGTAAAATGGTAATTCTG
1 TAAATCGAGGGTAAAATGGTAATTCTA
* * *
86572136 TAAATCAACGGTAAGATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
*
86572163 CAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
86572190 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
* * *
86572217 CAAATCGAGGGTAAGACGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
86572244 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
86572271 TAAATCGAGGGTAAAATGGTAATTCTA
1 TAAATCGAGGGTAAAATGGTAATTCTA
86572298 TAAATC
1 TAAATC
86572304 AAAGGTACTT
Statistics
Matches: 153, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 153 1.00
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
TAAATCGAGGGTAAAATGGTAATTCTA
Found at i:86572337 original size:27 final size:27
Alignment explanation
Indices: 86572110--86572337 Score: 294
Period size: 27 Copynumber: 8.4 Consensus size: 27
86572100 GTAATTTCGT
**
86572110 AAATCGAGGGTAAAATGGTAATTCTGT
1 AAATCGAGGGTAAAATGGTAATTCTAC
* * *
86572137 AAATCAACGGTAAGATGGTAATTCTAC
1 AAATCGAGGGTAAAATGGTAATTCTAC
*
86572164 AAATCGAGGGTAAAATGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTAC
86572191 AAATCGAGGGTAAAATGGTAATTCTAC
1 AAATCGAGGGTAAAATGGTAATTCTAC
* * *
86572218 AAATCGAGGGTAAGACGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTAC
*
86572245 AAATCGAGGGTAAAATGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTAC
*
86572272 AAATCGAGGGTAAAATGGTAATTCTAT
1 AAATCGAGGGTAAAATGGTAATTCTAC
* * *** *
86572299 AAATCAAAGGTACTTTGGTAATTTTAC
1 AAATCGAGGGTAAAATGGTAATTCTAC
*
86572326 AAGTCGAGGGTA
1 AAATCGAGGGTA
86572338 TTTCAATAAT
Statistics
Matches: 176, Mismatches: 25, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 176 1.00
ACGTcount: A:0.39, C:0.10, G:0.23, T:0.29
Consensus pattern (27 bp):
AAATCGAGGGTAAAATGGTAATTCTAC
Found at i:86572347 original size:27 final size:27
Alignment explanation
Indices: 86572317--86572376 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
86572307 GGTACTTTGG
86572317 TAATTTTACAAGTCGAGGGTATTTCAA
1 TAATTTTACAAGTCGAGGGTATTTCAA
* *
86572344 TAATTTTACAGGTCGAGGGTATTTCAG
1 TAATTTTACAAGTCGAGGGTATTTCAA
86572371 TAATTT
1 TAATTT
86572377 ATCTATTTTA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.30, C:0.10, G:0.20, T:0.40
Consensus pattern (27 bp):
TAATTTTACAAGTCGAGGGTATTTCAA
Found at i:86573623 original size:24 final size:24
Alignment explanation
Indices: 86573584--86573646 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
86573574 GCCGGCGAAC
*
86573584 TCCTGCTCCTTGATCAGCTCCTAAA
1 TCCT-CTCCTTTATCAGCTCCTAAA
*
86573609 TCTTCTCCTTTATCAGCTCCTAAA
1 TCCTCTCCTTTATCAGCTCCTAAA
*
86573633 TCCTCTCCCTTATC
1 TCCTCTCCTTTATC
86573647 NAACACCAAC
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
24 31 0.91
25 3 0.09
ACGTcount: A:0.17, C:0.38, G:0.06, T:0.38
Consensus pattern (24 bp):
TCCTCTCCTTTATCAGCTCCTAAA
Found at i:86574750 original size:57 final size:58
Alignment explanation
Indices: 86574679--86574788 Score: 168
Period size: 58 Copynumber: 1.9 Consensus size: 58
86574669 AAATTTCACA
*
86574679 TACCTGTATCTGGCCCACTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAAT
1 TACCTGTATATGGCCCACTAAGCCCAAATCATATTCATATGGCCCATTAGGCCCAAAT
* * * *
86574736 TACCTGTATATGGCCCATTAGGCCCAAATCATATTTATATGGCCCGTTAGGCC
1 TACCTGTATATGGCCCACTAAGCCCAAATCATATTCATATGGCCCATTAGGCC
86574789 TAGTCACATT
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 22 0.47
58 25 0.53
ACGTcount: A:0.26, C:0.29, G:0.16, T:0.28
Consensus pattern (58 bp):
TACCTGTATATGGCCCACTAAGCCCAAATCATATTCATATGGCCCATTAGGCCCAAAT
Found at i:86574751 original size:29 final size:29
Alignment explanation
Indices: 86574683--86574788 Score: 108
Period size: 29 Copynumber: 3.7 Consensus size: 29
86574673 TTCACATACC
* * * *
86574683 TGTATCTGGCCCACTAAGCCC-AATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
86574711 T-TCATATGGCCCATTAGGCCCAAATTACC
1 TGT-ATATGGCCCATTAGGCCCAAATCACA
*
86574740 TGTATATGGCCCATTAGGCCCAAATCATA
1 TGTATATGGCCCATTAGGCCCAAATCACA
* *
86574769 TTTATATGGCCCGTTAGGCC
1 TGTATATGGCCCATTAGGCC
86574789 TAGTCACATT
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
27 1 0.02
28 16 0.25
29 46 0.72
30 1 0.02
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.28
Consensus pattern (29 bp):
TGTATATGGCCCATTAGGCCCAAATCACA
Found at i:86575065 original size:16 final size:16
Alignment explanation
Indices: 86575023--86575065 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
86575013 ACTTTCAACT
*
86575023 TTTCGGCATTTCAGCA
1 TTTCGGCTTTTCAGCA
* * *
86575039 TTTCAGTTTTTCGGCA
1 TTTCGGCTTTTCAGCA
86575055 TTTCGGCTTTT
1 TTTCGGCTTTT
86575066 GCCGATACAT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.12, C:0.21, G:0.19, T:0.49
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:86580143 original size:40 final size:39
Alignment explanation
Indices: 86580057--86580239 Score: 181
Period size: 40 Copynumber: 4.6 Consensus size: 39
86580047 TCCTCGTTCA
* *
86580057 AATGCCTTCGGGACATAGCCC-GATTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAGCCCGGA-TTTAGTAACTCGCAC
* * *
86580096 AACGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* *
86580135 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
* * * * * *
86580175 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCAC
*
86580216 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
86580240 CAGCATTCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 9
0.81 0.13 0.06
Matches are distributed among these distances:
39 34 0.28
40 78 0.65
41 8 0.07
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCAC
Found at i:86580164 original size:79 final size:81
Alignment explanation
Indices: 86580057--86580239 Score: 205
Period size: 80 Copynumber: 2.3 Consensus size: 81
86580047 TCCTCGTTCA
*
86580057 AATGCCTTCGGGACATAGCCC-GATTTTAGTAACTCACAC-AACGCCTTCGGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGATTTTAGTAACTCACACAAACGCCTTC-GGATCTTAACCCGG
* *
86580119 ATTTAATAAC-TCGCAC
65 ATATAATAACTTAGCAC
* * * * **
86580135 GAATGCCTTCGGGACTTAACCCGGA-TTTAGTATCTCGCACAAAGGCCTTCGGATCTTAGTCCGG
1 -AATGCCTTCGGGACTTAGCCCGGATTTTAGTAACTCACACAAACGCCTTCGGATCTTAACCCGG
* *
86580199 ATATATTCACTTAGCAC
65 ATATAATAACTTAGCAC
*
86580216 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
86580240 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
79 35 0.40
80 47 0.54
81 5 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGATTTTAGTAACTCACACAAACGCCTTCGGATCTTAACCCGGA
TATAATAACTTAGCAC
Found at i:86580248 original size:41 final size:41
Alignment explanation
Indices: 86580171--86580248 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86580161 TTAGTATCTC
* * *
86580171 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86580212 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86580249 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86581854 original size:48 final size:48
Alignment explanation
Indices: 86581783--86581878 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 48
86581773 AAGGATGCAG
* *
86581783 CATCTCAGCATATCCTCGAGTATCTGAATTATCCGCTCGGATTGACCA
1 CATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCGGATTGACCA
86581831 CATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCGGATTGACCA
1 CATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCGGATTGACCA
86581879 TCGGTTTGGG
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 46 1.00
ACGTcount: A:0.27, C:0.29, G:0.15, T:0.29
Consensus pattern (48 bp):
CATCTCAACATATCCTCAAGTATCTGAATTATCCGCTCGGATTGACCA
Found at i:86587372 original size:40 final size:40
Alignment explanation
Indices: 86587274--86587536 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
86587264 TCCTCGTTCA
* * * ** *
86587274 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
86587313 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
86587353 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
86587393 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
86587433 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
86587473 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
86587513 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86587537 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:86591920 original size:45 final size:45
Alignment explanation
Indices: 86591883--86592112 Score: 306
Period size: 45 Copynumber: 5.2 Consensus size: 45
86591873 TACACGTAAC
* *
86591883 CACATATATCGATGCCAATGTCCTAGACGTGGTCTTACACGAAAA
1 CACATATATCGATGCCAACGTCCTAGACGTGGTCTTACACAAAAA
* *
86591928 CATATATATCGATGCCAACGTCCTA-AGTGTGGTCTTACACAAAAA
1 CACATATATCGATGCCAACGTCCTAGA-CGTGGTCTTACACAAAAA
** * *
86591973 CACATATATTAATG-CAACGTCCCAGACGTGGTTTTACACAAAAA
1 CACATATATCGATGCCAACGTCCTAGACGTGGTCTTACACAAAAA
* *
86592017 CACATGTATCGATGCCAACGTCCTAGACGTGATCTTACACAAAAA
1 CACATATATCGATGCCAACGTCCTAGACGTGGTCTTACACAAAAA
* *
86592062 CACATATATCGATGCCAACATGCC-AGACGT-GTCTTACATAAAAA
1 CACATATATCGATGCCAACGT-CCTAGACGTGGTCTTACACAAAAA
86592106 CACATAT
1 CACATAT
86592113 CGAAATCCTA
Statistics
Matches: 161, Mismatches: 20, Indels: 9
0.85 0.11 0.05
Matches are distributed among these distances:
44 56 0.35
45 103 0.64
46 2 0.01
ACGTcount: A:0.37, C:0.24, G:0.15, T:0.24
Consensus pattern (45 bp):
CACATATATCGATGCCAACGTCCTAGACGTGGTCTTACACAAAAA
Found at i:86592027 original size:89 final size:90
Alignment explanation
Indices: 86591857--86592112 Score: 320
Period size: 89 Copynumber: 2.9 Consensus size: 90
86591847 TGATACCGAT
* * ** * * *
86591857 GTCCCAGACATGATCTTACACGTAACCACATATATCGATGCCAATGTCCTAGACGTGGTCTTACA
1 GTCCTAGACGTGATCTTACACAAAAACACATATATCGATGCCAACGTCCCAGACGTGGTCTTACA
* *
86591922 CGAAAACATATATATCGATGCCAAC
66 CAAAAACACATATATCGATGCCAAC
* * ** *
86591947 GTCCTA-AGTGTGGTCTTACACAAAAACACATATATTAATG-CAACGTCCCAGACGTGGTTTTAC
1 GTCCTAGA-CGTGATCTTACACAAAAACACATATATCGATGCCAACGTCCCAGACGTGGTCTTAC
*
86592010 ACAAAAACACATGTATCGATGCCAAC
65 ACAAAAACACATATATCGATGCCAAC
* *
86592036 GTCCTAGACGTGATCTTACACAAAAACACATATATCGATGCCAACATGCCAGACGT-GTCTTACA
1 GTCCTAGACGTGATCTTACACAAAAACACATATATCGATGCCAACGTCCCAGACGTGGTCTTACA
*
86592100 TAAAAACACATAT
66 CAAAAACACATAT
86592113 CGAAATCCTA
Statistics
Matches: 139, Mismatches: 24, Indels: 7
0.82 0.14 0.04
Matches are distributed among these distances:
89 96 0.69
90 43 0.31
ACGTcount: A:0.36, C:0.25, G:0.15, T:0.24
Consensus pattern (90 bp):
GTCCTAGACGTGATCTTACACAAAAACACATATATCGATGCCAACGTCCCAGACGTGGTCTTACA
CAAAAACACATATATCGATGCCAAC
Found at i:86594100 original size:27 final size:23
Alignment explanation
Indices: 86594037--86594107 Score: 61
Period size: 27 Copynumber: 2.7 Consensus size: 23
86594027 TATTCTTTAA
86594037 TTTTCTCTTTAGTTTATTTTTCTCTT
1 TTTTCTCTTT--TTT-TTTTTCTCTT
*
86594063 TTGTTCCCTTTCTTTCTTTTTCTTCTT
1 TT-TTCTCTTT-TTT-TTTTTC-TCTT
86594090 TGTTTCTCTTTTTTTTTT
1 T-TTTCTCTTTTTTTTTT
86594108 CTGATTGAGA
Statistics
Matches: 38, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 4 0.11
26 14 0.37
27 19 0.50
28 1 0.03
ACGTcount: A:0.03, C:0.18, G:0.04, T:0.75
Consensus pattern (23 bp):
TTTTCTCTTTTTTTTTTTCTCTT
Found at i:86596644 original size:26 final size:26
Alignment explanation
Indices: 86596615--86596722 Score: 171
Period size: 26 Copynumber: 4.2 Consensus size: 26
86596605 TGGTACAAAT
86596615 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* * *
86596641 TGATAGTGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86596667 TGATAATGGGTTAGGTAAATGTTCCG
1 TGATAATGGGTTAGGTAAATGTTCCA
*
86596693 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
86596719 TGAT
1 TGAT
86596723 GGGCATTTCA
Statistics
Matches: 73, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 73 1.00
ACGTcount: A:0.31, C:0.07, G:0.26, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:86599474 original size:46 final size:46
Alignment explanation
Indices: 86599376--86599542 Score: 128
Period size: 46 Copynumber: 3.6 Consensus size: 46
86599366 GTGTTACAAG
* * *
86599376 TGTAAGACCATGTTTGGGACATGGCATCGACATTGAGACGAGTGCTAG
1 TGTAAGA-CATGTTTGGGACAT-GCATCGGCATCGAGACGAGTGCTAA
*
86599424 TGTAAGACATGTTTGGGACATGCATCGGCCTCGAGAC-A-TAAGCTAA
1 TGTAAGACATGTTTGGGACATGCATCGGCATCGAGACGAGT--GCTAA
* *** * * *
86599470 TGTAAGACATATCCAGGACATGCATCGGC-TACGAGA--TGTGTTAG
1 TGTAAGACATGTTTGGGACATGCATCGGCAT-CGAGACGAGTGCTAA
*
86599514 TGTAAGACCATGTCTGGGACATGGCATCG
1 TGTAAGA-CATGTTTGGGACAT-GCATCG
86599543 ATGTCTGACC
Statistics
Matches: 99, Mismatches: 14, Indels: 14
0.78 0.11 0.11
Matches are distributed among these distances:
44 11 0.11
45 13 0.13
46 54 0.55
47 14 0.14
48 7 0.07
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.25
Consensus pattern (46 bp):
TGTAAGACATGTTTGGGACATGCATCGGCATCGAGACGAGTGCTAA
Found at i:86613696 original size:27 final size:27
Alignment explanation
Indices: 86613658--86613995 Score: 321
Period size: 27 Copynumber: 12.6 Consensus size: 27
86613648 ACACTACAAA
* *
86613658 GGTATTTCGATAATTTTACAAATCGGG
1 GGTATTTTGATAATTTTACAAATCGAG
*
86613685 GGTGTTTTGATAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAG
* *
86613712 GGTATTTCGATAATTTTACAAATCAAG
1 GGTATTTTGATAATTTTACAAATCGAG
* * *
86613739 GGTGTTTTGGTAATTTTATAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAG
* *
86613766 GGT-GTTTCAGTAATTTTACAAATCGAG
1 GGTATTTTGA-TAATTTTACAAATCGAG
* * *
86613793 GGTGTTTTGGTAATTTCACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAG
* *
86613820 GGTATTTT-AGTAATTTCAC-AATCAAG
1 GGTATTTTGA-TAATTTTACAAATCGAG
* *
86613846 GGTATTTTGGTAAATTTACAAATC-AGG
1 GGTATTTTGATAATTTTACAAATCGA-G
* * *
86613873 GGTATTTCGATAATTTTATAAATTGAG
1 GGTATTTTGATAATTTTACAAATCGAG
* * * * *
86613900 GGT-GTTTCAGTAATTTTAAAAATCAAA
1 GGTATTTTGA-TAATTTTACAAATCGAG
* *
86613927 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTTGATAATTTTACAAATCGAG
* *
86613954 GGTATTTCGATAATTTCAC-AATCGAG
1 GGTATTTTGATAATTTTACAAATCGAG
86613980 GGTATTTT-AGTAATTT
1 GGTATTTTGA-TAATTT
86613996 CTCTTTATTA
Statistics
Matches: 254, Mismatches: 47, Indels: 21
0.79 0.15 0.07
Matches are distributed among these distances:
25 1 0.00
26 48 0.19
27 199 0.78
28 6 0.02
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTTGATAATTTTACAAATCGAG
Found at i:86613901 original size:134 final size:134
Alignment explanation
Indices: 86613654--86613992 Score: 464
Period size: 134 Copynumber: 2.5 Consensus size: 134
86613644 TTTTACACTA
* * * *
86613654 CAAAGGTATTTCGATAATTTTACAAATCGGGGGTGTTTTGATAATTTTACAAATCGAGGGTATTT
1 CAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTCAC-AATCGAGGGTATTT
* * * * * *
86613719 CGATAATTTTACAAATCAAGGGTGTTTTGGTAATTTTATAAATCGAGGGTGTTTCAGTAATTTTA
65 TGGTAAATTTACAAATCAAGGGTATTTCGATAATTTTATAAATCGAGGGTGTTTCAGTAATTTTA
*
86613784 CAAAT
130 AAAAT
* * * * * *
86613789 CGAGGGTGTTTTGGTAATTTCACAAATCGAGGGTATTTT-AGTAATTTCACAATCAAGGGTATTT
1 CAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGA-TAATTTCACAATCGAGGGTATTT
* *
86613853 TGGTAAATTTACAAATCAGGGGTATTTCGATAATTTTATAAATTGAGGGTGTTTCAGTAATTTTA
65 TGGTAAATTTACAAATCAAGGGTATTTCGATAATTTTATAAATCGAGGGTGTTTCAGTAATTTTA
86613918 AAAAT
130 AAAAT
*
86613923 CAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTCACAATCGAGGGTATTTT
1 CAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTCACAATCGAGGGTATTTT
*
86613988 AGTAA
66 GGTAA
86613993 TTTCTCTTTA
Statistics
Matches: 175, Mismatches: 27, Indels: 5
0.85 0.13 0.02
Matches are distributed among these distances:
134 135 0.77
135 40 0.23
ACGTcount: A:0.32, C:0.09, G:0.20, T:0.38
Consensus pattern (134 bp):
CAAAGGTATTTCGGTAATTTTACAAATCGAGGGTATTTTGATAATTTCACAATCGAGGGTATTTT
GGTAAATTTACAAATCAAGGGTATTTCGATAATTTTATAAATCGAGGGTGTTTCAGTAATTTTAA
AAAT
Found at i:86615763 original size:40 final size:40
Alignment explanation
Indices: 86615672--86615889 Score: 239
Period size: 40 Copynumber: 5.5 Consensus size: 40
86615662 ACCCAAGTAT
* * * *
86615672 CTTCGGGATTTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * **
86615710 CTTTGGGTCTTAGCCCGGATATGGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
*
86615750 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * *
86615790 CTTCGGGTCTTAGCCCGGATATCA--ACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
* * * * *
86615828 CTTC-GGATCTTAGTCTGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAATCACTAGCACAAATGC
86615868 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
86615890 CATTCGAATA
Statistics
Matches: 147, Mismatches: 27, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
37 2 0.01
38 38 0.26
39 16 0.11
40 88 0.60
41 3 0.02
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATGC
Found at i:86615826 original size:78 final size:77
Alignment explanation
Indices: 86615672--86615891 Score: 257
Period size: 78 Copynumber: 2.8 Consensus size: 77
86615662 ACCCAAGTAT
* * * * *
86615672 CTTCGGGATTTAGCCGGATATAACCACTCGCAC-AAGGCCTTTGGGTCTTAGCCCGGATATGGTC
1 CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATA---TC
86615736 -ACTAGCACAAATGC
63 AACTAGCACAAATGC
* *
86615750 CTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGCCTTCGGGTCTTAGCCCGGATATCAA
1 CTTCGGGACTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATCAA
*
86615815 CTCGCACAAATGC
65 CTAGCACAAATGC
* * * *
86615828 CTTC-GGATCTTAGTCTGGATATAGTCACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATATCA
1 CTTCGGGA-CTTAG-CCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATCA
86615892 TTCGAATAAC
Statistics
Matches: 124, Mismatches: 14, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
77 5 0.04
78 78 0.63
79 17 0.14
80 24 0.19
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (77 bp):
CTTCGGGACTTAGCCGGATATAATCACTAGCACAAAAGCCTTCGGGTCTTAGCCCGGATATCAAC
TAGCACAAATGC
Found at i:86615880 original size:118 final size:117
Alignment explanation
Indices: 86615672--86615889 Score: 305
Period size: 118 Copynumber: 1.8 Consensus size: 117
86615662 ACCCAAGTAT
* * * *
86615672 CTTCGGGATTTAGCCGGATATAACCACTCGCACAAGGCCTTTGGGTCTTAGCCCGGATATGGTCA
1 CTTCGGGATTTAGCCGGATAT-ACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCA
*
86615737 CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
65 CTAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
* * *
86615790 CTTCGGG-TCTTAGCCCGGATAT-CAACTCGCACAAATGCCTTCGGATCTTAGTCTGGATATAGT
1 CTTCGGGAT-TTAG-CCGGATATACAACTCGCAC-AAGGCCTTCGGATCTTAGCCCGGATATAGT
*
86615853 CACTAGCATAAAAGCCTTCGGGACTTAGCCCGGATAT
63 CACTAGCACAAAAGCCTTCGGGACTTAGCCCGGATAT
86615890 CATTCGAATA
Statistics
Matches: 88, Mismatches: 9, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
117 10 0.11
118 70 0.80
119 8 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (117 bp):
CTTCGGGATTTAGCCGGATATACAACTCGCACAAGGCCTTCGGATCTTAGCCCGGATATAGTCAC
TAGCACAAAAGCCTTCGGGACTTAGCCCGGATATAATCGCTAGCACAAATGC
Found at i:86623844 original size:40 final size:40
Alignment explanation
Indices: 86623785--86623865 Score: 153
Period size: 40 Copynumber: 2.0 Consensus size: 40
86623775 GTTTCAGGGA
86623785 AAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
1 AAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
*
86623825 AAAATCACTAGCATCAATGCCTTCGGGACTTAGCCCGGAT
1 AAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
86623865 A
1 A
86623866 TCATTCAAAT
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 40 1.00
ACGTcount: A:0.32, C:0.26, G:0.20, T:0.22
Consensus pattern (40 bp):
AAAATCACTAGCATAAATGCCTTCGGGACTTAGCCCGGAT
Found at i:86627797 original size:86 final size:86
Alignment explanation
Indices: 86627647--86627816 Score: 270
Period size: 86 Copynumber: 2.0 Consensus size: 86
86627637 GAAACCTTTC
86627647 ACAAATCGTCGGTAATAACCGGCGAGCCCCAAAAAGCTCCGAACTTCAGTAACATTTCTCGGAGG
1 ACAAATCGTCGGTAATAACCGGCGAGCCCCAAAAAGCTCCGAACTTCAGTAACATTTCTCGGAGG
*
86627712 TTTCCAGTCAAGTATGGCTAT
66 CTTCCAGTCAAGTATGGCTAT
* * * *
86627733 ACAAATCGTCGGTAATAATCC-GCGAGCCCCAAGAAGCTCCGAACTTCGGTAATATTTCTTGGAG
1 ACAAATCGTCGGTAATAA-CCGGCGAGCCCCAAAAAGCTCCGAACTTCAGTAACATTTCTCGGAG
*
86627797 GCTTCCAGTTAAGTATGGCT
65 GCTTCCAGTCAAGTATGGCT
86627817 GAAATTTTGC
Statistics
Matches: 77, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
86 75 0.97
87 2 0.03
ACGTcount: A:0.29, C:0.25, G:0.22, T:0.25
Consensus pattern (86 bp):
ACAAATCGTCGGTAATAACCGGCGAGCCCCAAAAAGCTCCGAACTTCAGTAACATTTCTCGGAGG
CTTCCAGTCAAGTATGGCTAT
Found at i:86629226 original size:81 final size:81
Alignment explanation
Indices: 86629091--86629248 Score: 289
Period size: 81 Copynumber: 2.0 Consensus size: 81
86629081 CTCGCGTGCG
* *
86629091 CGTATGGCATAAGCTCTAGCAGGAGTACGAGCCTCAGATCTGGTTGTAGCATCTCTAGATCCTCT
1 CGTATAGCATAAGCTCTAGCAGGAGCACGAGCCTCAGATCTGGTTGTAGCATCTCTAGATCCTCT
86629156 CTGACCGCCACTGGCA
66 CTGACCGCCACTGGCA
*
86629172 CGTATAGCATAAGCTCTAGCAGGCGCACGAGCCTCAGATCTGGTTGTAGCATCTCTAGATCCTCT
1 CGTATAGCATAAGCTCTAGCAGGAGCACGAGCCTCAGATCTGGTTGTAGCATCTCTAGATCCTCT
86629237 CTGACCGCCACT
66 CTGACCGCCACT
86629249 AGCATTGCCC
Statistics
Matches: 74, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
81 74 1.00
ACGTcount: A:0.22, C:0.30, G:0.23, T:0.25
Consensus pattern (81 bp):
CGTATAGCATAAGCTCTAGCAGGAGCACGAGCCTCAGATCTGGTTGTAGCATCTCTAGATCCTCT
CTGACCGCCACTGGCA
Found at i:86638593 original size:28 final size:28
Alignment explanation
Indices: 86638561--86638615 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
86638551 GCCCTTACGG
86638561 CCAAATCTGAGTACATTTTTCCAAGGCA
1 CCAAATCTGAGTACATTTTTCCAAGGCA
* *
86638589 CCAAATCTGGGTACCTTTTTCCAAGGC
1 CCAAATCTGAGTACATTTTTCCAAGGC
86638616 GAAACTTTAA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.27, C:0.27, G:0.16, T:0.29
Consensus pattern (28 bp):
CCAAATCTGAGTACATTTTTCCAAGGCA
Found at i:86642158 original size:16 final size:16
Alignment explanation
Indices: 86642137--86642168 Score: 55
Period size: 16 Copynumber: 2.0 Consensus size: 16
86642127 ACACATCCGG
86642137 ATGTTCACAAACTATC
1 ATGTTCACAAACTATC
*
86642153 ATGTTCACAAATTATC
1 ATGTTCACAAACTATC
86642169 GACACTGATT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (16 bp):
ATGTTCACAAACTATC
Found at i:86643176 original size:12 final size:12
Alignment explanation
Indices: 86643161--86643194 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
86643151 TCACTTTGGG
*
86643161 CTTTTCTTTTCT
1 CTTTGCTTTTCT
86643173 CTTTGCTTTTCT
1 CTTTGCTTTTCT
86643185 CTTTGGCTTT
1 CTTT-GCTTT
86643195 GCAAGCTCAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
12 15 0.75
13 5 0.25
ACGTcount: A:0.00, C:0.24, G:0.09, T:0.68
Consensus pattern (12 bp):
CTTTGCTTTTCT
Found at i:86649684 original size:31 final size:31
Alignment explanation
Indices: 86649649--86649711 Score: 101
Period size: 31 Copynumber: 2.0 Consensus size: 31
86649639 TCAAAAGATA
*
86649649 AAATTTCTTAATAAAATTTTC-TCACAATCAT
1 AAATTTCTTAATAAAATATTCAT-ACAATCAT
86649680 AAATTTCTTAATAAAATATTCATACAATCAT
1 AAATTTCTTAATAAAATATTCATACAATCAT
86649711 A
1 A
86649712 TTATCATGAT
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
31 29 0.97
32 1 0.03
ACGTcount: A:0.46, C:0.14, G:0.00, T:0.40
Consensus pattern (31 bp):
AAATTTCTTAATAAAATATTCATACAATCAT
Found at i:86652074 original size:26 final size:25
Alignment explanation
Indices: 86652045--86652103 Score: 66
Period size: 25 Copynumber: 2.4 Consensus size: 25
86652035 AATTTTCTTC
* *
86652045 TAATTTTTTTATTTTATTTAATTATT
1 TAATTTTTTTAATTTATTAAATTA-T
*
86652071 TAA-TTTTCTAATTTATTAAATTAT
1 TAATTTTTTTAATTTATTAAATTAT
*
86652095 TAATATTTT
1 TAATTTTTT
86652104 ATACTAATAA
Statistics
Matches: 27, Mismatches: 5, Indels: 3
0.77 0.14 0.09
Matches are distributed among these distances:
24 4 0.15
25 20 0.74
26 3 0.11
ACGTcount: A:0.32, C:0.02, G:0.00, T:0.66
Consensus pattern (25 bp):
TAATTTTTTTAATTTATTAAATTAT
Found at i:86652076 original size:18 final size:19
Alignment explanation
Indices: 86652035--86652077 Score: 52
Period size: 18 Copynumber: 2.3 Consensus size: 19
86652025 TGGTAAGACA
* *
86652035 AATTTTCTTCTAATTTTTT
1 AATTTTATTCTAATTATTT
*
86652054 TATTTTATT-TAATTATTT
1 AATTTTATTCTAATTATTT
86652072 AATTTT
1 AATTTT
86652078 CTAATTTATT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
18 13 0.65
19 7 0.35
ACGTcount: A:0.26, C:0.05, G:0.00, T:0.70
Consensus pattern (19 bp):
AATTTTATTCTAATTATTT
Found at i:86654826 original size:10 final size:11
Alignment explanation
Indices: 86654807--86654836 Score: 53
Period size: 10 Copynumber: 2.8 Consensus size: 11
86654797 TTTCCCTAAG
86654807 ATGTGAATTGA
1 ATGTGAATTGA
86654818 ATG-GAATTGA
1 ATGTGAATTGA
86654828 ATGTGAATT
1 ATGTGAATT
86654837 TTATTCAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
10 10 0.56
11 8 0.44
ACGTcount: A:0.37, C:0.00, G:0.27, T:0.37
Consensus pattern (11 bp):
ATGTGAATTGA
Found at i:86658205 original size:46 final size:46
Alignment explanation
Indices: 86658152--86658324 Score: 210
Period size: 46 Copynumber: 3.7 Consensus size: 46
86658142 TGGTTGAGCA
86658152 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * * *
86658198 TCTGAACTCGTTGAGTTGAGTCTGAGTTCA-TGA--AATG-TAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
86658243 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* *
86658291 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
86658325 GGGGCGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
45 3 0.03
46 60 0.57
47 28 0.26
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.31
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:86658308 original size:93 final size:93
Alignment explanation
Indices: 86658149--86658320 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
86658139 GGATGGTTGA
* *
86658149 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
*
86658214 TGAGTCTGAGTTCATGAAATGTAACTAG
66 TGAGTCCGAGTTCATGAAATGTAACTAG
*
86658242 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAGCTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
86658307 TGAGTCCGAGTTCA
66 TGAGTCCGAGTTCA
86658321 CTTAGGGGCG
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.30
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAGT
TGAGTCCGAGTTCATGAAATGTAACTAG
Found at i:86659778 original size:27 final size:26
Alignment explanation
Indices: 86659730--86659789 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
86659720 GCGAGGCTGC
*
86659730 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
86659757 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
86659783 CAGATAT
1 CAGATAT
86659790 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:86667919 original size:39 final size:38
Alignment explanation
Indices: 86667874--86668002 Score: 168
Period size: 39 Copynumber: 3.3 Consensus size: 38
86667864 ACTAAGATCT
86667874 GAAGGCATTTGTGCGAGATACTAATTCCAGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTCC-GGCTAAGCCC
* *
86667913 GAAGGCATTTTTGCGAGATACTAATTCTGGGCTAAGCCC
1 GAAGGCATTTGTGCGAGATACTAATTC-CGGCTAAGCCC
* * * *
86667952 GAAGTCATTTGTGCGAGTTACTAAATCCGAGCTATGTCCC
1 GAAGGCATTTGTGCGAGATACTAATTCCG-GCTAAG-CCC
86667992 GAAGGCATTTG
1 GAAGGCATTTG
86668003 AACGAGGACC
Statistics
Matches: 78, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
38 1 0.01
39 64 0.82
40 13 0.17
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (38 bp):
GAAGGCATTTGTGCGAGATACTAATTCCGGCTAAGCCC
Done.