Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 253 of 297
Found at i:86669839 original size:55 final size:57
Alignment explanation
Indices: 86669752--86669869 Score: 213
Period size: 55 Copynumber: 2.1 Consensus size: 57
86669742 TTCGAGATGA
86669752 TGTGGGCTGGTCGAGAGGCACTTCGGGCCTTTTTAGACGAGATCGTGATCGACCCCC
1 TGTGGGCTGGTCGAGAGGCACTTCGGGCCTTTTTAGACGAGATCGTGATCGACCCCC
*
86669809 T-TGGGC-GGTCTAGAGGCACTTCGGGCCTTTTTAGACGAGATCGTGATCGACCCCC
1 TGTGGGCTGGTCGAGAGGCACTTCGGGCCTTTTTAGACGAGATCGTGATCGACCCCC
86669864 TGTGGG
1 TGTGGG
86669870 TACACGAGGC
Statistics
Matches: 59, Mismatches: 1, Indels: 3
0.94 0.02 0.05
Matches are distributed among these distances:
55 49 0.83
56 9 0.15
57 1 0.02
ACGTcount: A:0.15, C:0.25, G:0.34, T:0.25
Consensus pattern (57 bp):
TGTGGGCTGGTCGAGAGGCACTTCGGGCCTTTTTAGACGAGATCGTGATCGACCCCC
Found at i:86677242 original size:39 final size:40
Alignment explanation
Indices: 86677142--86677365 Score: 255
Period size: 40 Copynumber: 5.7 Consensus size: 40
86677132 TTGAATGATG
* *
86677142 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
86677181 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
*
86677222 TCCTGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* * *
86677261 TCCGGGCTAAG-CCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
86677300 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
86677339 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
86677366 AACGAGTAGC
Statistics
Matches: 162, Mismatches: 15, Indels: 14
0.85 0.08 0.07
Matches are distributed among these distances:
39 73 0.45
40 76 0.47
41 12 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:86677316 original size:79 final size:80
Alignment explanation
Indices: 86677142--86677365 Score: 269
Period size: 79 Copynumber: 2.8 Consensus size: 80
86677132 TTGAATGATG
* * * *
86677142 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACCATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTATATCCGGGCTAAGACCCGAAGGCAT
*
86677205 TTGTGCGAGATACTAAT
64 TTGTGCGAGATACTAAA
*
86677222 TCCTGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA-ATTCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATA-TCCGGGCTAAGACCCGAAGGCATT
* *
86677284 TGTGTGAGTTACTAAA
65 TGTGCGAGATACTAAA
* * * * *
86677300 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
86677365 G
66 G
86677366 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 13, Indels: 12
0.83 0.09 0.08
Matches are distributed among these distances:
78 34 0.27
79 56 0.45
80 34 0.27
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACTAAA
Found at i:86677396 original size:79 final size:79
Alignment explanation
Indices: 86677195--86677398 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
86677185 GGACTAAGAT
** * * * * *
86677195 CCGAAGGCATTTGTGCGAGATACTAATTCCTGGCT-AAGCCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
86677259 ATTCCGGGCTAAGC
66 ATACCGGGCTAAGC
*** * *
86677273 CCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
*
86677337 ATAACCGGGCTATGTC
66 AT-ACCGGGCTAAG-C
* *
86677353 CCGAAGGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAGGCATTTGAACGAGTTA-CTAAATCCGGGTTAAATCCCGAAGG
86677399 TACGTGATTT
Statistics
Matches: 106, Mismatches: 16, Indels: 7
0.82 0.12 0.05
Matches are distributed among these distances:
78 32 0.30
79 50 0.47
80 24 0.23
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGAACGAGTTACTAAATCCGGGTTAAATCCCGAAGGCATTTGTGCGAGATACTA
ATACCGGGCTAAGC
Found at i:86683431 original size:27 final size:26
Alignment explanation
Indices: 86683383--86683442 Score: 66
Period size: 27 Copynumber: 2.3 Consensus size: 26
86683373 GCGAGGCTGC
*
86683383 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGGCACCAGA-A
* * *
86683410 CAGATATTGTGGCTAGGGCACCAGAA
1 CAGATATTGTGACGAAGGCACCAGAA
*
86683436 TAGATAT
1 CAGATAT
86683443 ATATATGTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
26 7 0.25
27 21 0.75
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (26 bp):
CAGATATTGTGACGAAGGCACCAGAA
Found at i:86683529 original size:27 final size:26
Alignment explanation
Indices: 86683482--86683532 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
86683472 CGAGGTTGCC
*
86683482 AGATATTGTGACGAAGTCACCAGAAT
1 AGATATTGTGACGAAGCCACCAGAAT
* *
86683508 AGATATATGTGGCGAGGCCACCAGA
1 AGATAT-TGTGACGAAGCCACCAGA
86683533 TTCAGTGAGG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.35, C:0.18, G:0.27, T:0.20
Consensus pattern (26 bp):
AGATATTGTGACGAAGCCACCAGAAT
Found at i:86686328 original size:66 final size:65
Alignment explanation
Indices: 86686201--86686328 Score: 141
Period size: 66 Copynumber: 1.9 Consensus size: 65
86686191 TACTATGTGT
* * * *
86686201 ACACCATGTAGACAAGAGAGCTAGGGATATATGTAGCTAGGTCGCATGCATGGTTCCAAGTGAAG
1 ACACCATGTAGACAAGAGAGCTAGAGATAAATG-AGCTAGGTCACATGCATGGTACCAAGTGAAG
86686266 G
65 G
* * ** *
86686267 ACACCATGTGGACAAGAGAGCTACGAGATAAACTG-GTTAGGTCACATGGGTGGTACTAAGTG
1 ACACCATGTAGACAAGAGAGCTA-GAGATAAA-TGAGCTAGGTCACATGCATGGTACCAAGTG
86686329 TTCACCATGT
Statistics
Matches: 51, Mismatches: 9, Indels: 4
0.80 0.14 0.06
Matches are distributed among these distances:
66 43 0.84
67 6 0.12
68 2 0.04
ACGTcount: A:0.32, C:0.16, G:0.30, T:0.21
Consensus pattern (65 bp):
ACACCATGTAGACAAGAGAGCTAGAGATAAATGAGCTAGGTCACATGCATGGTACCAAGTGAAGG
Found at i:86690711 original size:40 final size:40
Alignment explanation
Indices: 86690667--86690970 Score: 431
Period size: 40 Copynumber: 7.7 Consensus size: 40
86690657 GCTCCTCGTT
* * *
86690667 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
86690707 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
86690747 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
86690787 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
86690827 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
86690867 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
** * *
86690906 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGAT-TTAGTAAC-TCGCA
*
86690947 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
86690971 CATCATTCAA
Statistics
Matches: 246, Mismatches: 12, Indels: 13
0.91 0.04 0.05
Matches are distributed among these distances:
38 2 0.01
39 49 0.20
40 186 0.76
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:86696999 original size:193 final size:193
Alignment explanation
Indices: 86696670--86697054 Score: 743
Period size: 193 Copynumber: 2.0 Consensus size: 193
86696660 AGAAATTCCT
86696670 TCCGTTTTTGATCAACAAATCTCTGACTGATATACTTTTTCCGAAACTCAGTTTGGAAAAACTCC
1 TCCGTTTTTGATCAACAAATCTCTGACTGATATACTTTTTCCGAAACTCAGTTTGGAAAAACTCC
86696735 CAAGTTACTTGCTCTCGGGGCACAACAGAAGTCAGAGTACTCCACCAATAATAGGCAGAATCACG
66 CAAGTTACTTGCTCTCGGGGCACAACAGAAGTCAGAGTACTCCACCAATAATAGGCAGAATCACG
*
86696800 TAGCAAGGAGATAGTACACTTTAGGCATTCATCGGGTGTACAAGATAGCTCATCGAGTACCCG
131 TAGCAAGGAGATAGTACACTTTAGGCATTCATCGGGTGTACAAGATAGCTCATCAAGTACCCG
86696863 TCCGTTTTTGATCAACAAATCTCTGACTGATATACTTTTTCCGAAACTCAGTTTGGAAAAACTCC
1 TCCGTTTTTGATCAACAAATCTCTGACTGATATACTTTTTCCGAAACTCAGTTTGGAAAAACTCC
* *
86696928 CAAGTTACTTGCTCTCGGGGCACAACAGAAGTCAGAGTACTCCACCAATAGTAGGCAGAATCGCG
66 CAAGTTACTTGCTCTCGGGGCACAACAGAAGTCAGAGTACTCCACCAATAATAGGCAGAATCACG
86696993 TAGCAAGGAGATAGTACACTTTAGGCATTCATCGGGTGTACAAGATAGCTCATCAAGTACCC
131 TAGCAAGGAGATAGTACACTTTAGGCATTCATCGGGTGTACAAGATAGCTCATCAAGTACCC
86697055 AGATAGTGTT
Statistics
Matches: 189, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
193 189 1.00
ACGTcount: A:0.31, C:0.23, G:0.20, T:0.26
Consensus pattern (193 bp):
TCCGTTTTTGATCAACAAATCTCTGACTGATATACTTTTTCCGAAACTCAGTTTGGAAAAACTCC
CAAGTTACTTGCTCTCGGGGCACAACAGAAGTCAGAGTACTCCACCAATAATAGGCAGAATCACG
TAGCAAGGAGATAGTACACTTTAGGCATTCATCGGGTGTACAAGATAGCTCATCAAGTACCCG
Found at i:86697652 original size:46 final size:46
Alignment explanation
Indices: 86697599--86697691 Score: 186
Period size: 46 Copynumber: 2.0 Consensus size: 46
86697589 GTCAAACACG
86697599 AGGTGTTAACAGACTTTTAAAAATTTTCCAGACACTGCCAATCTGC
1 AGGTGTTAACAGACTTTTAAAAATTTTCCAGACACTGCCAATCTGC
86697645 AGGTGTTAACAGACTTTTAAAAATTTTCCAGACACTGCCAATCTGC
1 AGGTGTTAACAGACTTTTAAAAATTTTCCAGACACTGCCAATCTGC
86697691 A
1 A
86697692 TAATAGTCGC
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.33, C:0.22, G:0.15, T:0.30
Consensus pattern (46 bp):
AGGTGTTAACAGACTTTTAAAAATTTTCCAGACACTGCCAATCTGC
Found at i:86698970 original size:40 final size:40
Alignment explanation
Indices: 86698926--86699189 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
86698916 GCTCCTCGTT
* *
86698926 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
86698966 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
86699006 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
86699046 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
86699086 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
86699125 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
86699166 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86699190 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:86700405 original size:42 final size:42
Alignment explanation
Indices: 86700349--86700478 Score: 197
Period size: 42 Copynumber: 3.1 Consensus size: 42
86700339 TCTCGATATA
**
86700349 ATATATATAAGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
86700391 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTGAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * * *
86700433 ATATATATCCGGGTTAAATCTCGCAAGCTTAGTGCTGGTATT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
86700475 ATAT
1 ATAT
86700479 CCGGACTTAG
Statistics
Matches: 80, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
42 80 1.00
ACGTcount: A:0.26, C:0.18, G:0.23, T:0.33
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:86702991 original size:46 final size:46
Alignment explanation
Indices: 86702938--86703113 Score: 171
Period size: 46 Copynumber: 3.8 Consensus size: 46
86702928 TGGTTGAGCA
86702938 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* * * * *
86702984 TCTGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--ATG
* * * * *
86703029 CATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTCATGGATACGAATG
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
* *
86703077 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
86703114 GCGGGTTACA
Statistics
Matches: 103, Mismatches: 19, Indels: 16
0.75 0.14 0.12
Matches are distributed among these distances:
43 6 0.06
45 7 0.07
46 56 0.54
47 26 0.25
48 4 0.04
50 4 0.04
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
Found at i:86703094 original size:93 final size:93
Alignment explanation
Indices: 86702935--86703106 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
86702925 GGATGGTTGA
* * * **
86702935 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCTGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCATGGATACAAATGTCCCAACTCGTTGAGT
86703000 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
86703028 GCATCCGAGCTCGTTGAGTTGAGTCCAAGTTCACTCATGGATACGAATG-CCCAAGCTCGTTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCATGGATACAAATGTCCCAA-CTCGTTGAG
86703092 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
86703107 CTTATGGGCG
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
92 3 0.04
93 68 0.96
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCAAGTTCACTCATGGATACAAATGTCCCAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:86710878 original size:40 final size:40
Alignment explanation
Indices: 86710834--86710963 Score: 206
Period size: 40 Copynumber: 3.2 Consensus size: 40
86710824 GCTCTCGATA
86710834 TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
1 TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
86710874 TAATATATATATCCGGGTTAAATCCCGCAGGTTTCGTGCTGG
1 T-A-ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
* *
86710916 TAATATATATCCGGGTTAAATCCCACAGGCTTAGTGCTGG
1 TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
*
86710956 TACTATAT
1 TAATATAT
86710964 CCGGACTTAG
Statistics
Matches: 83, Mismatches: 5, Indels: 4
0.90 0.05 0.04
Matches are distributed among these distances:
40 43 0.52
41 2 0.02
42 38 0.46
ACGTcount: A:0.25, C:0.20, G:0.22, T:0.32
Consensus pattern (40 bp):
TAATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGG
Found at i:86710888 original size:42 final size:42
Alignment explanation
Indices: 86710836--86710963 Score: 206
Period size: 42 Copynumber: 3.1 Consensus size: 42
86710826 TCTCGATATA
86710836 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
*
86710878 ATATATATCCGGGTTAAATCCCGCAGGTTTCGTGCTGGT-A-
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
* * *
86710918 ATATATATCCGGGTTAAATCCCACAGGCTTAGTGCTGGTACT
1 ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
86710960 ATAT
1 ATAT
86710964 CCGGACTTAG
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
40 36 0.46
41 1 0.01
42 42 0.53
ACGTcount: A:0.25, C:0.20, G:0.23, T:0.32
Consensus pattern (42 bp):
ATATATATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAT
Found at i:86715115 original size:6 final size:6
Alignment explanation
Indices: 86715100--86715149 Score: 57
Period size: 6 Copynumber: 8.5 Consensus size: 6
86715090 GGTTGAAGAC
* * * *
86715100 TTTTTA -TTTTA TTTTTA TTTTTA TTTTCA TTTTCA CTTTTA TCTTTA
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA
86715147 TTT
1 TTT
86715150 ATCTTCTTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 2
0.82 0.13 0.04
Matches are distributed among these distances:
5 5 0.14
6 32 0.86
ACGTcount: A:0.16, C:0.08, G:0.00, T:0.76
Consensus pattern (6 bp):
TTTTTA
Found at i:86715178 original size:25 final size:26
Alignment explanation
Indices: 86715143--86715200 Score: 77
Period size: 25 Copynumber: 2.3 Consensus size: 26
86715133 CACTTTTATC
86715143 TTTA-TTTATCTTC-TTTAAGTACT-T
1 TTTATTTTATCTTCATTTAA-TACTAT
86715167 TTTATTTTATCTTCATTTAATACTAT
1 TTTATTTTATCTTCATTTAATACTAT
*
86715193 TTCATTTT
1 TTTATTTT
86715201 TAGGTTTTAT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
24 4 0.13
25 13 0.43
26 13 0.43
ACGTcount: A:0.22, C:0.12, G:0.02, T:0.64
Consensus pattern (26 bp):
TTTATTTTATCTTCATTTAATACTAT
Found at i:86716288 original size:21 final size:21
Alignment explanation
Indices: 86716262--86716303 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
86716252 ACTTAGCTAT
86716262 GTTTTATTTTTGATAGTTAAC
1 GTTTTATTTTTGATAGTTAAC
86716283 GTTTTATTTTTGATAGTTAAC
1 GTTTTATTTTTGATAGTTAAC
86716304 CTATGTTATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.05, G:0.14, T:0.57
Consensus pattern (21 bp):
GTTTTATTTTTGATAGTTAAC
Found at i:86720190 original size:40 final size:40
Alignment explanation
Indices: 86720132--86720353 Score: 331
Period size: 40 Copynumber: 5.6 Consensus size: 40
86720122 TATTCGAATG
*
86720132 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGGCT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
* *
86720172 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
*
86720212 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
*
86720252 ATACCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
* * * *
86720292 ATATCCGGGCTAAAACCCGAAGGTATTTGTTCGAGTTG-CT
1 ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAG-TGACT
*
86720332 ATATCC-GACTAAATCCCGAAGG
1 ATATCCGGGCTAAATCCCGAAGG
86720354 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 14 0.08
40 152 0.90
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86728269 original size:40 final size:40
Alignment explanation
Indices: 86728209--86728430 Score: 340
Period size: 40 Copynumber: 5.6 Consensus size: 40
86728199 TATTTGAATG
*
86728209 ATATCCGGGCTAAGTACCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
86728249 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
86728289 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
86728329 ATACCCGGGCTAAATCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
86728369 ATATCCGGGCTAAGACCCGAAGGTATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
86728409 ATATCC-GGCTAAATCCCAAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
86728431 TACTTGGGTT
Statistics
Matches: 168, Mismatches: 13, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
39 13 0.08
40 153 0.91
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:86731009 original size:23 final size:23
Alignment explanation
Indices: 86730983--86731028 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
86730973 TGCTTAGAGA
*
86730983 TAGCACAGGTATGTTCTTAAAAC
1 TAGCACAGGTATGTTCTCAAAAC
86731006 TAGCACAGGTATGTTCTCAAAAC
1 TAGCACAGGTATGTTCTCAAAAC
86731029 CTAGGAGCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (23 bp):
TAGCACAGGTATGTTCTCAAAAC
Found at i:86732653 original size:13 final size:13
Alignment explanation
Indices: 86732635--86732669 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
86732625 GTAGAGACAT
86732635 GGCCGTGTGTCTC
1 GGCCGTGTGTCTC
86732648 GGCCGTGTGTCTC
1 GGCCGTGTGTCTC
*
86732661 AGCCGTGTG
1 GGCCGTGTG
86732670 GAAGACACGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.03, C:0.29, G:0.40, T:0.29
Consensus pattern (13 bp):
GGCCGTGTGTCTC
Found at i:86732791 original size:20 final size:20
Alignment explanation
Indices: 86732762--86732813 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
86732752 CGGGCTGAAG
86732762 ACACGGGCGTGTCTAGAGCC
1 ACACGGGCGTGTCTAGAGCC
*
86732782 ACACGAGCGTGTCTAGAGCC
1 ACACGGGCGTGTCTAGAGCC
*
86732802 ATACGGGCGTGT
1 ACACGGGCGTGT
86732814 GAGACCACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.21, C:0.27, G:0.35, T:0.17
Consensus pattern (20 bp):
ACACGGGCGTGTCTAGAGCC
Found at i:86737886 original size:24 final size:23
Alignment explanation
Indices: 86737854--86737900 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 23
86737844 GAGATTTCCT
* *
86737854 ATAAGGAGACATAAGGAAGGTGAG
1 ATAAGGAGAAATAAAGAA-GTGAG
86737878 ATAAGGAGAAATAAAGAAGTGAG
1 ATAAGGAGAAATAAAGAAGTGAG
86737901 TGGGAAAGGG
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
23 5 0.24
24 16 0.76
ACGTcount: A:0.51, C:0.02, G:0.34, T:0.13
Consensus pattern (23 bp):
ATAAGGAGAAATAAAGAAGTGAG
Found at i:86739328 original size:20 final size:20
Alignment explanation
Indices: 86739305--86739375 Score: 81
Period size: 20 Copynumber: 3.5 Consensus size: 20
86739295 TGCGTGCCCC
*
86739305 TGATTGTACTTCAGTACCCA
1 TGATTGCACTTCAGTACCCA
*
86739325 TGATTGCACTTACA-TGCCCA
1 TGATTGCACTT-CAGTACCCA
* * *
86739345 TGTTTGTACTTCGGTACCCA
1 TGATTGCACTTCAGTACCCA
86739365 TGATTGCACTT
1 TGATTGCACTT
86739376 ACGTGCCCCT
Statistics
Matches: 41, Mismatches: 8, Indels: 4
0.77 0.15 0.08
Matches are distributed among these distances:
19 1 0.02
20 38 0.93
21 2 0.05
ACGTcount: A:0.21, C:0.25, G:0.17, T:0.37
Consensus pattern (20 bp):
TGATTGCACTTCAGTACCCA
Found at i:86739502 original size:120 final size:120
Alignment explanation
Indices: 86739298--86739514 Score: 319
Period size: 120 Copynumber: 1.8 Consensus size: 120
86739288 TTACATTTGC
* * *
86739298 GTGCCCCTGATTGTACTTCAGTACCCATGATTGCACTTACATGCCCATGTTTGTACTTCGGTACC
1 GTGCCCCTGATTGTACTTCAGTACCCATGATTGCACTTACATGCCCATGTTTATAATCCGGTACC
* *
86739363 CATGATTGCACTTACGTGCCCCTGTTTATACTTCGATACCCTTGATTGCACTTAT
66 CATGAATGCACTTACGTGCCCCTCTTTATACTTCGATACCCTTGATTGCACTTAT
* * * *
86739418 GTGCCCCT-ATTTGTACTTCGGTACCCTTGATTTCACTTACATGCCCCTGTTTATAATCCGGTAC
1 GTGCCCCTGA-TTGTACTTCAGTACCCATGATTGCACTTACATGCCCATGTTTATAATCCGGTAC
* *
86739482 CCCTGAATGCACTTATGTGCCCCTCTTTATACT
65 CCATGAATGCACTTACGTGCCCCTCTTTATACT
86739515 CTGGTAACTC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
119 1 0.01
120 84 0.99
ACGTcount: A:0.18, C:0.29, G:0.16, T:0.36
Consensus pattern (120 bp):
GTGCCCCTGATTGTACTTCAGTACCCATGATTGCACTTACATGCCCATGTTTATAATCCGGTACC
CATGAATGCACTTACGTGCCCCTCTTTATACTTCGATACCCTTGATTGCACTTAT
Found at i:86739511 original size:40 final size:40
Alignment explanation
Indices: 86739297--86739514 Score: 256
Period size: 40 Copynumber: 5.5 Consensus size: 40
86739287 ATTACATTTG
* * * *
86739297 CGTGCCCCTGATTGTACTTCAGTACCCATGATTGCACTTA
1 CGTGCCCCTGTTTATACTTCGGTACCCTTGATTGCACTTA
* * * *
86739337 CATGCCCATGTTTGTACTTCGGTACCCATGATTGCACTTA
1 CGTGCCCCTGTTTATACTTCGGTACCCTTGATTGCACTTA
*
86739377 CGTGCCCCTGTTTATACTTCGATACCCTTGATTGCACTTA
1 CGTGCCCCTGTTTATACTTCGGTACCCTTGATTGCACTTA
* * * *
86739417 TGTGCCCCTATTTGTACTTCGGTACCCTTGATTTCACTTA
1 CGTGCCCCTGTTTATACTTCGGTACCCTTGATTGCACTTA
* * * * *
86739457 CATGCCCCTGTTTATAATCCGGTACCCCTGAATGCACTTA
1 CGTGCCCCTGTTTATACTTCGGTACCCTTGATTGCACTTA
* *
86739497 TGTGCCCCTCTTTATACT
1 CGTGCCCCTGTTTATACT
86739515 CTGGTAACTC
Statistics
Matches: 151, Mismatches: 27, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
40 151 1.00
ACGTcount: A:0.18, C:0.30, G:0.16, T:0.36
Consensus pattern (40 bp):
CGTGCCCCTGTTTATACTTCGGTACCCTTGATTGCACTTA
Found at i:86742313 original size:27 final size:27
Alignment explanation
Indices: 86742280--86742801 Score: 171
Period size: 27 Copynumber: 19.2 Consensus size: 27
86742270 CAAAACAGCC
* * * *
86742280 ATTTTACCCTATAGGGGTATGTCGGTC
1 ATTTTACACTATAAGGGTATTTCGGTA
*
86742307 ATTTTACACTGTAAGGGTATTTCGGTA
1 ATTTTACACTATAAGGGTATTTCGGTA
*
86742334 ATTTTACACTATAAGGGTATTTCGATA
1 ATTTTACACTATAAGGGTATTTCGGTA
* * * *
86742361 ATTTTACA-AATCAGGGGTGTTTTGGTA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* * **
86742388 ATTTTACA-AATTGAGGGTATTTTAGTA
1 ATTTTACACTA-TAAGGGTATTTCGGTA
* * *
86742415 ATTTTACA-AATCGAGGGTATTTCAGTA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* * * *
86742442 ATTTTACA-AATCGAGGTTATTTCAGTA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* ** *
86742469 ATTTTACAAATTGAGGTATTTCGGTATTTCGATA
1 ATTTTAC--ACT-A--TA--AGGGTATTTCGGTA
* ** **
86742503 ATTTTACA-AATCGGGGATATTTAAGTA
1 ATTTTACACTATAAGGG-TATTTCGGTA
* ** * *
86742530 ATTTTACA-AATCGGGGGTGTTTCGATA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* * * *
86742557 ATTTTACA-AATCGAGGGTATTTTGATA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* *
86742584 ATTTTACA-AATCGAA-GGTATTTTGGTA
1 ATTTTACACTAT--AAGGGTATTTCGGTA
* * *
86742611 A-TTT-CACAATCGACGGTATTTCGGTA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* * * *
86742637 ATTTTACA-AATCGAGGGTTTTTCAGTA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* *
86742664 A-TTT-CACAATCGAGGGTATTTCGGTA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
*
86742690 ATTTTACA-AATCAAGGGTATTTCGGTA
1 ATTTTACACTAT-AAGGGTATTTCGGTA
* * * *
86742717 ATTTTACA-AATTGAGGATATTTCAGTA
1 ATTTTACACTA-TAAGGGTATTTCGGTA
* * *
86742744 ATTTCACAAT-TAAAGGTATTTCGGTA
1 ATTTTACACTATAAGGGTATTTCGGTA
* **
86742770 ATTTTACA-AATCGGAGGTATTTCGGTA
1 ATTTTACACTATAAG-GGTATTTCGGTA
86742797 ATTTT
1 ATTTT
86742802 TCAAATTGAG
Statistics
Matches: 404, Mismatches: 66, Indels: 50
0.78 0.13 0.10
Matches are distributed among these distances:
25 5 0.01
26 64 0.16
27 302 0.75
28 12 0.03
29 1 0.00
30 1 0.00
31 1 0.00
32 1 0.00
33 1 0.00
34 16 0.04
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.40
Consensus pattern (27 bp):
ATTTTACACTATAAGGGTATTTCGGTA
Found at i:86742388 original size:54 final size:53
Alignment explanation
Indices: 86742321--86742807 Score: 425
Period size: 54 Copynumber: 9.0 Consensus size: 53
86742311 TACACTGTAA
* *
86742321 GGGTATTTCGGTAATTTTACACTAT-AAGGGTATTTCGATAATTTTACAAATCAG
1 GGGTATTTCGGTAATTTTACA-AATCGAGGGTATTTCGATAATTTTACAAATC-G
* * * *
86742375 GGGTGTTTTGGTAATTTTACAAATTGAGGGTATTT-TAGTAATTTTACAAATCG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCG
* * *
86742428 AGGGTATTTCAGTAATTTTACAAATCGAGGTTATTTC-AGTAATTTTACAAATTGAG
1 -GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAA-T-CG
* *
86742484 GTATTTCGGTATTTCGATAATTTTACAAATCG-GGGATATTT-AAGTAATTTTACAAATCGG
1 G------GGTATTTCGGTAATTTTACAAATCGAGGG-TATTTCGA-TAATTTTACAAATC-G
* * *
86742544 GGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCG
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * * * *
86742597 AAGGTATTTTGGTAATTTCAC-AATCGACGGTATTTCGGTAATTTTACAAATCG
1 -GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
* * * * *
86742650 AGGGTTTTTCAGTAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATCAA
1 -GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATC-G
* * * * **
86742704 GGGTATTTCGGTAATTTTACAAATTGAGGATATTTC-AGTAATTTCACAATTAA
1 GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGA-TAATTTTACAAATCG
* * *
86742757 AGGTATTTCGGTAATTTTACAAATCG-GAGGTATTTCGGTAATTTTTCAAAT
1 GGGTATTTCGGTAATTTTACAAATCGAG-GGTATTTCGATAATTTTACAAAT
86742808 TGAGGGTGTT
Statistics
Matches: 363, Mismatches: 47, Indels: 47
0.79 0.10 0.10
Matches are distributed among these distances:
52 1 0.00
53 140 0.39
54 168 0.46
55 6 0.02
56 1 0.00
60 5 0.01
61 42 0.12
ACGTcount: A:0.31, C:0.10, G:0.19, T:0.40
Consensus pattern (53 bp):
GGGTATTTCGGTAATTTTACAAATCGAGGGTATTTCGATAATTTTACAAATCG
Found at i:86742642 original size:53 final size:53
Alignment explanation
Indices: 86742491--86742807 Score: 345
Period size: 53 Copynumber: 5.9 Consensus size: 53
86742481 GAGGTATTTC
* * ** **
86742491 GGTATTTCGATAATTTTACAAATCGGGGATATTTAAGTAATTTTACAAATCGGG
1 GGTATTTCGGTAATTTTACAAATCGAGG-TATTTCGGTAATTTTACAAATCGAA
* * * *
86742545 GGTGTTTCGATAATTTTACAAATCGAGGGTATTTTGATAATTTTACAAATCGAA
1 GGTATTTCGGTAATTTTACAAATCGA-GGTATTTCGGTAATTTTACAAATCGAA
* * *
86742599 GGTATTTTGGTAATTTCAC-AATCGACGGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGA-GGTATTTCGGTAATTTTACAAATCGAA
* * *
86742652 GGTTTTTCAGTAATTTCAC-AATCGAGGGTATTTCGGTAATTTTACAAATC-AA
1 GGTATTTCGGTAATTTTACAAATCGA-GGTATTTCGGTAATTTTACAAATCGAA
* * * **
86742704 GGGTATTTCGGTAATTTTACAAATTGAGGATATTTCAGTAATTTCAC-AATTAAA
1 -GGTATTTCGGTAATTTTACAAATCGAGG-TATTTCGGTAATTTTACAAATCGAA
*
86742758 GGTATTTCGGTAATTTTACAAATCGGAGGTATTTCGGTAATTTTTCAAAT
1 GGTATTTCGGTAATTTTACAAATC-GAGGTATTTCGGTAATTTTACAAAT
86742808 TGAGGGTGTT
Statistics
Matches: 225, Mismatches: 31, Indels: 14
0.83 0.11 0.05
Matches are distributed among these distances:
52 1 0.00
53 134 0.60
54 88 0.39
55 2 0.01
ACGTcount: A:0.32, C:0.11, G:0.19, T:0.39
Consensus pattern (53 bp):
GGTATTTCGGTAATTTTACAAATCGAGGTATTTCGGTAATTTTACAAATCGAA
Found at i:86742666 original size:80 final size:80
Alignment explanation
Indices: 86742527--86742825 Score: 379
Period size: 80 Copynumber: 3.7 Consensus size: 80
86742517 GGATATTTAA
* * * * *
86742527 GTAATTTTACAAATCGGGGGTGTTTCGATAATTTTACAAATCGAGGGTATTTTGA-TAATTTTAC
1 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGT-TTTTCAGTAATTTCAC
*
86742591 AAATCGAAGGTATTTTG
65 -AATCGAAGGTATTTCG
* *
86742608 GTAATTTCAC-AATCGACGGTATTTCGGTAATTTTACAAATCGAGGGTTTTTCAGTAATTTCACA
1 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTTTTTCAGTAATTTCACA
*
86742672 ATCGAGGGTATTTCG
66 ATCGAAGGTATTTCG
* * * *
86742687 GTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATTGAGGATATTTCAGTAATTTCACA
1 GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTTTTTCAGTAATTTCACA
**
86742752 ATTAAAGGTATTTCG
66 ATCGAAGGTATTTCG
* * * *
86742767 GTAATTTTACAAATCG-GAGGTATTTCGGTAATTTTTCAAATTGAGGGTGTTTCAATAAT
1 GTAATTTTACAAATCGAG-GGTATTTCGGTAATTTTACAAATCGAGGGTTTTTCAGTAAT
86742826 GTCTCTTTAT
Statistics
Matches: 192, Mismatches: 23, Indels: 7
0.86 0.10 0.03
Matches are distributed among these distances:
79 29 0.15
80 154 0.80
81 9 0.05
ACGTcount: A:0.31, C:0.11, G:0.19, T:0.39
Consensus pattern (80 bp):
GTAATTTTACAAATCGAGGGTATTTCGGTAATTTTACAAATCGAGGGTTTTTCAGTAATTTCACA
ATCGAAGGTATTTCG
Found at i:86742825 original size:27 final size:27
Alignment explanation
Indices: 86742491--86742819 Score: 371
Period size: 27 Copynumber: 12.3 Consensus size: 27
86742481 GAGGTATTTC
*
86742491 GGTATTTCGATAATTTTACAAATCG-G
1 GGTATTTCGGTAATTTTACAAATCGAG
** *
86742517 GGATATTTAAGTAATTTTACAAATCGGG
1 GG-TATTTCGGTAATTTTACAAATCGAG
* *
86742545 GGTGTTTCGATAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
86742572 GGTATTTTGATAATTTTACAAATCGAA
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
86742599 GGTATTTTGGTAATTTCAC-AATCGAC
1 GGTATTTCGGTAATTTTACAAATCGAG
86742625 GGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * *
86742652 GGTTTTTCAGTAATTTCAC-AATCGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
86742678 GGTATTTCGGTAATTTTACAAATCAAG
1 GGTATTTCGGTAATTTTACAAATCGAG
*
86742705 GGTATTTCGGTAATTTTACAAATTGAG
1 GGTATTTCGGTAATTTTACAAATCGAG
* * * ** *
86742732 GATATTTCAGTAATTTCAC-AATTAAA
1 GGTATTTCGGTAATTTTACAAATCGAG
86742758 GGTATTTCGGTAATTTTACAAATCG-G
1 GGTATTTCGGTAATTTTACAAATCGAG
* *
86742784 AGGTATTTCGGTAATTTTTCAAATTGAG
1 -GGTATTTCGGTAATTTTACAAATCGAG
*
86742812 GGTGTTTC
1 GGTATTTC
86742820 AATAATGTCT
Statistics
Matches: 256, Mismatches: 40, Indels: 13
0.83 0.13 0.04
Matches are distributed among these distances:
26 69 0.27
27 183 0.71
28 4 0.02
ACGTcount: A:0.31, C:0.11, G:0.20, T:0.39
Consensus pattern (27 bp):
GGTATTTCGGTAATTTTACAAATCGAG
Found at i:86743119 original size:14 final size:14
Alignment explanation
Indices: 86743070--86743120 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
86743060 TCTGCTTAAG
86743070 TAGTTACCAAAAAC
1 TAGTTACCAAAAAC
* * *
86743084 TAGGT-CCACAACC
1 TAGTTACCAAAAAC
* *
86743097 CATTTACCAAAAAC
1 TAGTTACCAAAAAC
86743111 TAGTTACCAA
1 TAGTTACCAA
86743121 TCACATTCAC
Statistics
Matches: 26, Mismatches: 10, Indels: 2
0.68 0.26 0.05
Matches are distributed among these distances:
13 8 0.31
14 18 0.69
ACGTcount: A:0.43, C:0.27, G:0.08, T:0.22
Consensus pattern (14 bp):
TAGTTACCAAAAAC
Found at i:86743149 original size:28 final size:28
Alignment explanation
Indices: 86743117--86743204 Score: 149
Period size: 28 Copynumber: 3.1 Consensus size: 28
86743107 AAACTAGTTA
*
86743117 CCAATCACATTCACATGGCCCATCAAGC
1 CCAATCACATTCACATGGCCCATCAGGC
86743145 CCAATCACATTCACATGGCCCATCAGGC
1 CCAATCACATTCACATGGCCCATCAGGC
* *
86743173 CCAATCAAATTCATATGGCCCATCAGGC
1 CCAATCACATTCACATGGCCCATCAGGC
86743201 CCAA
1 CCAA
86743205 CTACTTCCCA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 57 1.00
ACGTcount: A:0.32, C:0.38, G:0.12, T:0.18
Consensus pattern (28 bp):
CCAATCACATTCACATGGCCCATCAGGC
Found at i:86744286 original size:18 final size:19
Alignment explanation
Indices: 86744257--86744300 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
86744247 CTTTTGCCGA
86744257 ATATACTTTTCATATACA-C
1 ATATA-TTTTCATATACATC
*
86744276 ATATATTTTCATTTACATC
1 ATATATTTTCATATACATC
86744295 ATATAT
1 ATATAT
86744301 AATTAGTATC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATATTTTCATATACATC
Found at i:86744577 original size:41 final size:43
Alignment explanation
Indices: 86744479--86744586 Score: 123
Period size: 41 Copynumber: 2.6 Consensus size: 43
86744469 AATGCCAACA
* * *
86744479 TCCCAGACGTGGTCTTACATGTAATCACATACTGATCCCATTG
1 TCCCAGACATGGTCTTACACGTAATCAAATACTGATCCCATTG
* * *
86744522 TCCCAGACAGGGTCTTAGACG-AATCAAATAC-GATGCCGA-TG
1 TCCCAGACATGGTCTTACACGTAATCAAATACTGAT-CCCATTG
*
86744563 TCCCAGACATGGTCTTACATGTAA
1 TCCCAGACATGGTCTTACACGTAA
86744587 CATCCAGAAT
Statistics
Matches: 54, Mismatches: 9, Indels: 5
0.79 0.13 0.07
Matches are distributed among these distances:
41 23 0.43
42 14 0.26
43 17 0.31
ACGTcount: A:0.29, C:0.26, G:0.19, T:0.26
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACACGTAATCAAATACTGATCCCATTG
Found at i:86763332 original size:40 final size:40
Alignment explanation
Indices: 86763253--86763429 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
86763243 CGGATGATAA
* * * *
86763253 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
* * * *
86763293 CCGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATAT
*
86763333 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
86763373 CCGGGCTAAGACTCGAAGGCATTTGTGCGAGTTGTTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
*
86763413 -CTGGCTAA-ATCCCGAAG
1 CCGGGCTAAGA-CCCGAAG
86763430 ATACTTGGGT
Statistics
Matches: 117, Mismatches: 17, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
38 1 0.01
39 15 0.13
40 99 0.85
41 2 0.02
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGTTATAT
Found at i:86763696 original size:22 final size:22
Alignment explanation
Indices: 86763657--86763698 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
86763647 GAATATGCAT
*
86763657 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATTAATTTAGCC
86763679 ATATGAATGTTA-TAATTTAG
1 ATATGAA-GTTATTAATTTAG
86763699 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 14 0.78
23 4 0.22
ACGTcount: A:0.36, C:0.07, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATTAATTTAGCC
Found at i:86771832 original size:47 final size:47
Alignment explanation
Indices: 86771754--86772016 Score: 391
Period size: 47 Copynumber: 5.6 Consensus size: 47
86771744 CCCTTCGGGA
* * * * * *
86771754 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86771801 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
86771848 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86771895 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
86771944 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
86771991 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
86772017 CACAATTATC
Statistics
Matches: 196, Mismatches: 18, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
47 151 0.77
49 45 0.23
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86771951 original size:96 final size:96
Alignment explanation
Indices: 86771754--86772016 Score: 399
Period size: 96 Copynumber: 2.8 Consensus size: 96
86771744 CCCTTCGGGA
* * * * * * * *
86771754 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCAC--ATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
86771817 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
*
86771848 CTCATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
* *
86771913 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATCGGCCATTAGGC
86771944 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
86772009 A--TTCACAT
66 ACTTTCACAT
86772017 CACAATTATC
Statistics
Matches: 155, Mismatches: 12, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
94 53 0.34
96 102 0.66
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (96 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATAC
ACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:86772052 original size:143 final size:141
Alignment explanation
Indices: 86771756--86772016 Score: 405
Period size: 143 Copynumber: 1.8 Consensus size: 141
86771746 CTTCGGGACT
* * *
86771756 TATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTT
1 TATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACACTT
* *
86771821 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACTTTCACATTCATCACATCGG
66 TCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACATTCACATTCATCACATCAG
*
86771886 CCATTAGGCCT
131 CCATTAGGCCA
* * *
86771897 TATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACAC
1 TATCAC--ATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACAC
* *
86771962 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATATACATTCACAT
64 TTTCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACATTCACAT
86772017 CACAATTATC
Statistics
Matches: 109, Mismatches: 9, Indels: 2
0.91 0.08 0.02
Matches are distributed among these distances:
141 6 0.06
143 103 0.94
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (141 bp):
TATCACATATATACACTTTCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACACTT
TCACATTCATCACATCGGCCATTAGGCCTCATCACATATATACACATTCACATTCATCACATCAG
CCATTAGGCCA
Found at i:86774856 original size:79 final size:78
Alignment explanation
Indices: 86774754--86774976 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 78
86774744 GCTCCTCGTT
* *
86774754 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
86774819 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
* *
86774834 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGG-CTTAGCCCGGA
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
*
86774898 ATTAGTATCTCGCA
65 ATTAGTAACTCGCA
* * * * *
86774912 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCCG
86774975 GA
63 GA
86774977 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
78 45 0.36
79 60 0.48
80 20 0.16
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:86774871 original size:39 final size:40
Alignment explanation
Indices: 86774754--86774976 Score: 280
Period size: 39 Copynumber: 5.7 Consensus size: 40
86774744 GCTCCTCGTT
* *
86774754 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCA
* *
86774794 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
86774834 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
*
86774873 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
* * *
86774912 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAAC-TCGCA
86774953 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86774977 CATCATTCAA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
38 2 0.01
39 88 0.53
40 67 0.40
41 10 0.06
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCA
Found at i:86782775 original size:40 final size:40
Alignment explanation
Indices: 86782731--86782992 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
86782721 GCTCCTCGTT
* *
86782731 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
86782771 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
86782811 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
86782850 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
86782889 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
86782928 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
86782969 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86782993 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:86786780 original size:40 final size:40
Alignment explanation
Indices: 86786706--86786877 Score: 208
Period size: 40 Copynumber: 4.3 Consensus size: 40
86786696 GATAATCGGA
* *
86786706 CTAAGATCCGAAGGCATTCGTGCGAGTT-TCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGT-TATATCCGGG
* * * * *
86786746 CTATGTCCCGAAGGCATTTATGCTAG-TGATTATATCCGGA
1 CTAAGACCCGAAGGCATTTGTGCGAGTTG-TTATATCCGGG
*
86786786 CTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
*
86786826 CTGAGACCCGAAGGCATTTGTGCGAGTTGTTATATCC-GG
1 CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
86786865 CTAA-ATCCCGAAG
1 CTAAGA-CCCGAAG
86786878 ATACTTGGGT
Statistics
Matches: 112, Mismatches: 16, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
38 1 0.01
39 13 0.12
40 95 0.85
41 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
CTAAGACCCGAAGGCATTTGTGCGAGTTGTTATATCCGGG
Found at i:86786836 original size:80 final size:80
Alignment explanation
Indices: 86786702--86786877 Score: 243
Period size: 80 Copynumber: 2.2 Consensus size: 80
86786692 GGATGATAAT
* * *
86786702 CGGACTAAGATCCGAAGGCATTCGTGCGAGTTTCTATATCCGGGCTATGTCCCGAAGGCATTTAT
1 CGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGACCCGAAGGCATTTAT
*
86786767 GCTAG-TGATTATATC
66 GCGAGTTG-TTATATC
* *
86786782 CGGACTAAGACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTGA-GACCCGAAGGCATTTG
1 CGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCT-ATGACCCGAAGGCATTTA
86786846 TGCGAGTTGTTATATC
65 TGCGAGTTGTTATATC
86786862 CGG-CTAA-ATCCCGAAG
1 CGGACTAAGA-CCCGAAG
86786878 ATACTTGGGT
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
78 1 0.01
79 11 0.13
80 72 0.83
81 3 0.03
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (80 bp):
CGGACTAAGACCCGAAGGCATTCGTGCGAGTTGCTATATCCGGGCTATGACCCGAAGGCATTTAT
GCGAGTTGTTATATC
Found at i:86787145 original size:22 final size:22
Alignment explanation
Indices: 86787105--86787146 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
86787095 GAATGTGCAT
*
86787105 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
86787127 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
86787147 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:86796780 original size:48 final size:48
Alignment explanation
Indices: 86796709--86796803 Score: 163
Period size: 48 Copynumber: 2.0 Consensus size: 48
86796699 TAAAATTGAT
*
86796709 AGCAGGAATAAGGAGTGTAAACTCCTCGCACCACCATGACCATGCAAC
1 AGCAGGAATAAGGAGTGTAAACTCCTCGCACCACCATGACCACGCAAC
* *
86796757 AGCAGGAATGAGGAGTGTAAACTCCTTGCACCACCATGACCACGCAA
1 AGCAGGAATAAGGAGTGTAAACTCCTCGCACCACCATGACCACGCAA
86796804 TAGAGAGGTA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 44 1.00
ACGTcount: A:0.35, C:0.28, G:0.22, T:0.15
Consensus pattern (48 bp):
AGCAGGAATAAGGAGTGTAAACTCCTCGCACCACCATGACCACGCAAC
Found at i:86800643 original size:27 final size:27
Alignment explanation
Indices: 86800602--86800655 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
86800592 TGTCATGTGA
* *
86800602 AATTGAATGGAAAATTATTGTTACATG
1 AATTGAATGGAAAATTACTATTACATG
**
86800629 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGAAAATTACTATTACATG
86800656 GGTTGTATGA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.41, C:0.06, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGAAAATTACTATTACATG
Found at i:86800981 original size:49 final size:50
Alignment explanation
Indices: 86800901--86801145 Score: 226
Period size: 49 Copynumber: 4.9 Consensus size: 50
86800891 ATCTATTGTG
* *
86800901 AGGTCACGTGTGTAGTACTAAGTACAGGCTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * **
86800951 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACTC-GATAACTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC-CAGATAA-TT
* * * * *
86801001 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * **
86801051 AGGTCACGTATATAGTACTGAGTGCAGGCTACTACATGTACTGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * * * *
86801101 -TGTCGCATGTGTAGCACTAAGTTCAAGCTACTATGCGTACCAGAT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGAT
86801146 GGCCTTGTCT
Statistics
Matches: 153, Mismatches: 38, Indels: 9
0.76 0.19 0.05
Matches are distributed among these distances:
49 70 0.46
50 46 0.30
51 37 0.24
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:86808341 original size:28 final size:28
Alignment explanation
Indices: 86808309--86808407 Score: 105
Period size: 28 Copynumber: 3.5 Consensus size: 28
86808299 ATAATAAGCC
* *
86808309 CGCACACTTAGTTCT-TAATAGTCGAA-CT
1 CGCACACTTAGTGCTAT-ATAATC-AACCT
86808337 CGCACACTTAGTGCTATATAATCAACCT
1 CGCACACTTAGTGCTATATAATCAACCT
* *
86808365 CGCACACTTAGTGCTATACAATTTGAACC-
1 CGCACACTTAGTGCTATATAA--TCAACCT
86808394 CGCACACTTAGTGC
1 CGCACACTTAGTGC
86808408 CAATCTCATG
Statistics
Matches: 63, Mismatches: 4, Indels: 7
0.85 0.05 0.09
Matches are distributed among these distances:
27 2 0.03
28 41 0.65
29 15 0.24
30 5 0.08
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAACCT
Found at i:86811020 original size:27 final size:27
Alignment explanation
Indices: 86810978--86811268 Score: 413
Period size: 27 Copynumber: 10.8 Consensus size: 27
86810968 CCTTAATCGA
* **
86810978 TAAAATGACTATTTTGCATTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
86811005 TAAAATGACTGATTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
86811032 TAAAATGACTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
86811059 TAAAATGACTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* * *
86811086 TAAAATGACTATTTTACCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
86811113 TAAAATGACTGTTTTGCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
** *
86811140 TAAAATGACCATTTTTCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
* *
86811167 TAAAATGACTGTTTTTCCCTTATGGGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
*
86811194 TAAAATGACTATTTTGCCCTTATGAGG
1 TAAAATGACTGTTTTGCCCTTATGAGG
86811221 TAAAATGACTGTTTTGCCCTTAT-ATGG
1 TAAAATGACTGTTTTGCCCTTATGA-GG
*
86811248 TAAAATGATTGTTTTGCCCTT
1 TAAAATGACTGTTTTGCCCTT
86811269 TTATGGTAAG
Statistics
Matches: 241, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
26 1 0.00
27 240 1.00
ACGTcount: A:0.26, C:0.14, G:0.21, T:0.38
Consensus pattern (27 bp):
TAAAATGACTGTTTTGCCCTTATGAGG
Found at i:86813642 original size:18 final size:18
Alignment explanation
Indices: 86813608--86813647 Score: 53
Period size: 18 Copynumber: 2.2 Consensus size: 18
86813598 ATTAATAAAC
*
86813608 TTATGTTTATGCCTATGG
1 TTATGTTTATGACTATGG
* *
86813626 TTATGTTTATGATTATGT
1 TTATGTTTATGACTATGG
86813644 TTAT
1 TTAT
86813648 TATGGCATCA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.17, T:0.57
Consensus pattern (18 bp):
TTATGTTTATGACTATGG
Found at i:86820281 original size:15 final size:15
Alignment explanation
Indices: 86820261--86820305 Score: 63
Period size: 15 Copynumber: 2.9 Consensus size: 15
86820251 TAATATGGTA
86820261 TCTTGGATTTCTTTC
1 TCTTGGATTTCTTTC
* *
86820276 TCTTGGATTTCCTCTG
1 TCTTGGATTT-CTTTC
86820292 TCTTGGATTTCTTT
1 TCTTGGATTTCTTT
86820306 ATTCTGGTTT
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
15 13 0.50
16 13 0.50
ACGTcount: A:0.07, C:0.20, G:0.16, T:0.58
Consensus pattern (15 bp):
TCTTGGATTTCTTTC
Found at i:86820297 original size:16 final size:16
Alignment explanation
Indices: 86820261--86820302 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
86820251 TAATATGGTA
*
86820261 TCTTGGATTT-CTTTC
1 TCTTGGATTTCCTCTC
*
86820276 TCTTGGATTTCCTCTG
1 TCTTGGATTTCCTCTC
86820292 TCTTGGATTTC
1 TCTTGGATTTC
86820303 TTTATTCTGG
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
15 10 0.42
16 14 0.58
ACGTcount: A:0.07, C:0.21, G:0.17, T:0.55
Consensus pattern (16 bp):
TCTTGGATTTCCTCTC
Found at i:86824147 original size:18 final size:18
Alignment explanation
Indices: 86824121--86824157 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86824111 CTTGGCCCAT
* *
86824121 TACAGTAACAGTAAACAG
1 TACAATAACAATAAACAG
86824139 TACAATAACAATAAACAG
1 TACAATAACAATAAACAG
86824157 T
1 T
86824158 GCAGTAGAAG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.54, C:0.16, G:0.11, T:0.19
Consensus pattern (18 bp):
TACAATAACAATAAACAG
Found at i:86824508 original size:27 final size:27
Alignment explanation
Indices: 86824462--86824586 Score: 153
Period size: 27 Copynumber: 4.6 Consensus size: 27
86824452 CATGACGTAG
* * * *
86824462 GGGCAAAACAGTAATCTTACCACCTAA
1 GGGCAAAATAGTCATTTTACCACATAA
* *
86824489 GGGCAAATTAGTTATTTTACCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
86824516 GGGCAAAACT-GTCATTTTACCACATAA
1 GGGCAAAA-TAGTCATTTTACCACATAA
* *
86824543 GGGCAAAATAGTCAGTTTATCACATAA
1 GGGCAAAATAGTCATTTTACCACATAA
*
86824570 GGGTAAAATAGTCATTT
1 GGGCAAAATAGTCATTT
86824587 CACCTTATAG
Statistics
Matches: 85, Mismatches: 11, Indels: 4
0.85 0.11 0.04
Matches are distributed among these distances:
26 1 0.01
27 83 0.98
28 1 0.01
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (27 bp):
GGGCAAAATAGTCATTTTACCACATAA
Found at i:86824702 original size:27 final size:27
Alignment explanation
Indices: 86824579--86824718 Score: 140
Period size: 27 Copynumber: 5.2 Consensus size: 27
86824569 AGGGTAAAAT
* * * * *
86824579 AGTCATTTCACCTTATAGGAGTATTAC
1 AGTCATTTTACCCTATGGGGGTATTTC
* *
86824606 AGTCATTTTATCCTACT-AGGGTATTTC
1 AGTCATTTTACCCTA-TGGGGGTATTTC
*
86824633 TGTCATTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
*
86824660 GGTCATTCTT-CCCTATGGGGGTATTTC
1 AGTCATT-TTACCCTATGGGGGTATTTC
* * *
86824687 GGTCATTTTACCCTATGAGGGTTTTTC
1 AGTCATTTTACCCTATGGGGGTATTTC
86824714 AGTCA
1 AGTCA
86824719 CATTCAAGTA
Statistics
Matches: 96, Mismatches: 13, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
26 3 0.03
27 90 0.94
28 3 0.03
ACGTcount: A:0.19, C:0.19, G:0.20, T:0.41
Consensus pattern (27 bp):
AGTCATTTTACCCTATGGGGGTATTTC
Found at i:86832762 original size:56 final size:56
Alignment explanation
Indices: 86832676--86832787 Score: 206
Period size: 56 Copynumber: 2.0 Consensus size: 56
86832666 CCTCCTCACG
*
86832676 AGCGCGAATGGCATAAGCTCTGGCAGGTGCACGAGCCTCAGATTGAACTACTGTGT
1 AGCGCGAATGGCATAAGCTCTGGCAGGTGCACGAGCCTCAGATCGAACTACTGTGT
*
86832732 AGCGCGAATGGCATAAGCTCTGGCAGGTGCACGAGCCTCAGATCGAACTGCTGTGT
1 AGCGCGAATGGCATAAGCTCTGGCAGGTGCACGAGCCTCAGATCGAACTACTGTGT
86832788 CTTTAGTTCC
Statistics
Matches: 54, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.24, C:0.24, G:0.31, T:0.21
Consensus pattern (56 bp):
AGCGCGAATGGCATAAGCTCTGGCAGGTGCACGAGCCTCAGATCGAACTACTGTGT
Found at i:86835460 original size:40 final size:40
Alignment explanation
Indices: 86835360--86835616 Score: 230
Period size: 40 Copynumber: 6.3 Consensus size: 40
86835350 TCCTCGTTCA
* * * *
86835360 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
86835399 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* *
86835439 AATGCCTTCGGGACTTCACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
86835479 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * ** *
86835519 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACTCGCACG
1 AATGCCTTCGGGA-CATAACCCGG--AT-TT-A-ATA--ACTCGCACG
* * * * *
86835566 AATGCCTTTGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
86835606 AAGGCCTTCGG
1 AATGCCTTCGG
86835617 ATCTTAGTCC
Statistics
Matches: 181, Mismatches: 27, Indels: 19
0.80 0.12 0.08
Matches are distributed among these distances:
39 37 0.20
40 105 0.58
42 4 0.02
43 3 0.02
44 3 0.02
45 4 0.02
47 22 0.12
48 3 0.02
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:86835504 original size:80 final size:80
Alignment explanation
Indices: 86835358--86835669 Score: 301
Period size: 80 Copynumber: 3.8 Consensus size: 80
86835348 GCTCCTCGTT
* * * * * *
86835358 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-AATGCCTTCGGGACATAACCCGG
1 CAAAGGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
** *
86835422 ATTTAACAACTCGCA
66 ATTTAGTATCTCGCA
* *
86835437 CGAATGCCTTCGGGACTTCA-CCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCG
1 CAAAGGCCTTCGGGACTT-AGCCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCG
86835501 GATTTAGTATCTCGCA
65 GATTTAGTATCTCGCA
* * *
86835517 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACTCGCACGAATGCCTTTGGGACT
1 CAAAGGCCTTCGGGA-CTTAGCCCGG--AT-TT-A-ATA--ACTCGCACGAATGCCTTCGGGACT
86835581 TAACCCGGATTTAGTATCTCGCA
58 TAACCCGGATTTAGTATCTCGCA
* * * * * * *
86835604 CAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-AAAGCCTTCGGGACTTAGCCC
1 CAAAGGCCTTCGGGA-CTTAGCCCGGATTTAATAAC-TCGCACGAATGCCTTCGGGACTTAACCC
86835667 GGA
64 GGA
86835670 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 20, Indels: 23
0.82 0.08 0.09
Matches are distributed among these distances:
79 38 0.19
80 74 0.37
81 5 0.02
82 4 0.02
83 3 0.01
84 2 0.01
85 4 0.02
87 71 0.35
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CAAAGGCCTTCGGGACTTAGCCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTTAACCCGG
ATTTAGTATCTCGCA
Found at i:86835616 original size:87 final size:87
Alignment explanation
Indices: 86835470--86835645 Score: 343
Period size: 87 Copynumber: 2.0 Consensus size: 87
86835460 GGATTTAATA
86835470 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTT
86835535 AGTCCGGATATATTCACTTAGC
66 AGTCCGGATATATTCACTTAGC
*
86835557 ACTCGCACGAATGCCTTTGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTT
86835622 AGTCCGGATATATTCACTTAGC
66 AGTCCGGATATATTCACTTAGC
86835644 AC
1 AC
86835646 AAAGCCTTCG
Statistics
Matches: 88, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
87 88 1.00
ACGTcount: A:0.24, C:0.27, G:0.20, T:0.28
Consensus pattern (87 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGATCTT
AGTCCGGATATATTCACTTAGC
Found at i:86835653 original size:40 final size:40
Alignment explanation
Indices: 86835514--86835669 Score: 120
Period size: 40 Copynumber: 3.7 Consensus size: 40
86835504 TTAGTATCTC
*
86835514 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGA-CTTAGCCCGGATATATTCACTTA
* * * * * *
86835555 GCACTCGCACGAATGCCTTTGGGACTTAACCCGGATTTAGT-A-TCTC
1 GCA----CA--AAGGCC-TTCGGACTTAGCCCGGATATATTCACT-TA
*
86835601 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGA-CTTAGCCCGGATATATTCACTTA
86835642 GCACAAA-GCCTTCGGGACTTAGCCCGGA
1 GCACAAAGGCCTTC-GGACTTAGCCCGGA
86835670 CAGCATTCAA
Statistics
Matches: 88, Mismatches: 15, Indels: 25
0.69 0.12 0.20
Matches are distributed among these distances:
39 5 0.06
40 34 0.39
41 15 0.17
42 3 0.03
45 3 0.03
46 5 0.06
47 18 0.20
48 5 0.06
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
GCACAAAGGCCTTCGGACTTAGCCCGGATATATTCACTTA
Found at i:86835656 original size:127 final size:127
Alignment explanation
Indices: 86835430--86835669 Score: 308
Period size: 127 Copynumber: 1.9 Consensus size: 127
86835420 GGATTTAACA
* * *
86835430 ACTCGCACGAATGCCTTCGGGACTTCACCCGGATTTAATAACTCGCACGAATGCCTTCGGGACTT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTT
* * *
86835495 AACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGC
66 AACCCGGATATAGTATCTAGCACAAAGGCCTTCGGGA-CTTAGCCCGGATATATTCACTTAGC
* * *
86835557 ACTCGCACGAATGCCTTTGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCT
1 ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGA-CT
** *
86835621 TAGTCCGGATATATTCA-CTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
65 TAACCCGGATATAGT-ATC-TAGCACAAAGGCCTTCGGGACTTAGCCCGGA
86835670 CAGCATTCAA
Statistics
Matches: 97, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
126 3 0.03
127 82 0.85
128 12 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (127 bp):
ACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACAAAGGCCTTCGGGACTT
AACCCGGATATAGTATCTAGCACAAAGGCCTTCGGGACTTAGCCCGGATATATTCACTTAGC
Found at i:86835678 original size:41 final size:41
Alignment explanation
Indices: 86835601--86835678 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
86835591 TTAGTATCTC
* * *
86835601 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
86835642 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
86835679 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:86836240 original size:79 final size:78
Alignment explanation
Indices: 86836087--86836240 Score: 290
Period size: 78 Copynumber: 2.0 Consensus size: 78
86836077 ACATGCAAAA
86836087 ATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCATGTCTATTTT
1 ATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCATGTCTATTTT
86836152 TGGGGTCGATTTC
66 TGGGGTCGATTTC
*
86836165 ATCATGCATCAACACAACATATTAGCTAATTTTTTTCCTCCTTGGCCGAATATGCATGTCTATTT
1 ATCATGCATCAACACAACATATTAGCTAATTTCTTTCC-CCTTGGCCGAATATGCATGTCTATTT
86836230 TTGGGGTCGAT
65 TTGGGGTCGAT
86836241 CTCAACACTT
Statistics
Matches: 74, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
78 37 0.50
79 37 0.50
ACGTcount: A:0.25, C:0.22, G:0.16, T:0.38
Consensus pattern (78 bp):
ATCATGCATCAACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCATGTCTATTTT
TGGGGTCGATTTC
Found at i:86836258 original size:78 final size:77
Alignment explanation
Indices: 86836097--86836263 Score: 248
Period size: 79 Copynumber: 2.2 Consensus size: 77
86836087 ATCATGCATC
86836097 AACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCATGTCTATTTTTGGGGTCGAT
1 AACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCATGTCTATTTTTGGGGTCGAT
* * *
86836162 TTCATCATGCAT
66 CTCAACATGAAT
*
86836174 CAACACAACATATTAGCTAATTTTTTTCCTCCTTGGCCGAATATGCATGTCTATTTTTGGGGTCG
1 -AACACAACATATTAGCTAATTTCTTTCC-CCTTGGCCGAATATGCATGTCTATTTTTGGGGTCG
*
86836239 ATCTCAACACTTAAT
64 ATCTCAACA-TGAAT
86836254 -ACAC-ACATAT
1 AACACAACATAT
86836264 ACACACACTA
Statistics
Matches: 82, Mismatches: 5, Indels: 5
0.89 0.05 0.05
Matches are distributed among these distances:
77 6 0.07
78 31 0.38
79 42 0.51
80 3 0.04
ACGTcount: A:0.27, C:0.23, G:0.14, T:0.37
Consensus pattern (77 bp):
AACACAACATATTAGCTAATTTCTTTCCCCTTGGCCGAATATGCATGTCTATTTTTGGGGTCGAT
CTCAACATGAAT
Found at i:86842730 original size:40 final size:40
Alignment explanation
Indices: 86842632--86842974 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
86842622 TCCTCGTTCA
* * * * *
86842632 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
86842671 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86842711 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86842751 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86842791 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
86842831 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
86842871 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
86842911 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
86842951 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
86842975 CAGCATTCAA
Statistics
Matches: 282, Mismatches: 18, Indels: 7
0.92 0.06 0.02
Matches are distributed among these distances:
39 39 0.14
40 235 0.83
41 8 0.03
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:86849815 original size:18 final size:19
Alignment explanation
Indices: 86849786--86849829 Score: 63
Period size: 19 Copynumber: 2.3 Consensus size: 19
86849776 CTTTGGCCAA
86849786 ATATACTTTTCATATACA-C
1 ATATA-TTTTCATATACATC
*
86849805 ATATATTTTCATTTACATC
1 ATATATTTTCATATACATC
86849824 ATATAT
1 ATATAT
86849830 AATTAGTATA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 11 0.48
19 12 0.52
ACGTcount: A:0.36, C:0.16, G:0.00, T:0.48
Consensus pattern (19 bp):
ATATATTTTCATATACATC
Found at i:86851567 original size:8 final size:8
Alignment explanation
Indices: 86851549--86851578 Score: 51
Period size: 8 Copynumber: 3.6 Consensus size: 8
86851539 AAGCAAATTA
86851549 TGTGTATTT
1 TGTG-ATTT
86851558 TGTGATTT
1 TGTGATTT
86851566 TGTGATTT
1 TGTGATTT
86851574 TGTGA
1 TGTGA
86851579 ATTAAGGACT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 17 0.81
9 4 0.19
ACGTcount: A:0.13, C:0.00, G:0.27, T:0.60
Consensus pattern (8 bp):
TGTGATTT
Found at i:86858399 original size:46 final size:46
Alignment explanation
Indices: 86858335--86858429 Score: 172
Period size: 46 Copynumber: 2.1 Consensus size: 46
86858325 AAATCGCATA
*
86858335 CACCAACTAAAGCATTATTCAAGCTGACTTATTTAACCAAGCTCAC
1 CACCAACTAAACCATTATTCAAGCTGACTTATTTAACCAAGCTCAC
*
86858381 CACCAACTAGACCATTATTCAAGCTGACTTATTTAACCAAGCTCAC
1 CACCAACTAAACCATTATTCAAGCTGACTTATTTAACCAAGCTCAC
86858427 CAC
1 CAC
86858430 ACACATTTAT
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 47 1.00
ACGTcount: A:0.36, C:0.31, G:0.08, T:0.25
Consensus pattern (46 bp):
CACCAACTAAACCATTATTCAAGCTGACTTATTTAACCAAGCTCAC
Found at i:86863558 original size:39 final size:40
Alignment explanation
Indices: 86863458--86863642 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
86863448 TTGAATGATG
* * * *
86863458 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * * *
86863498 TCCGGACTAAGAT-CCGAAGGCATTTGTGTGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
86863538 TCTGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
86863577 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
86863618 -CCGGACTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
86863643 AACGAGTAGC
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
39 33 0.28
40 78 0.65
41 9 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:86863594 original size:79 final size:80
Alignment explanation
Indices: 86863461--86863614 Score: 188
Period size: 79 Copynumber: 1.9 Consensus size: 80
86863451 AATGATGTCC
* *
86863461 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
*
86863526 TGAGATACTAATTCT
66 CGAGATACTAATTCT
* * * **
86863541 GGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAATTG
1 GGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAATTG
*
86863603 TGCGAGTTACTA
64 TGCGAGATACTA
86863615 TAACCGGACT
Statistics
Matches: 63, Mismatches: 9, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
78 1 0.02
79 47 0.75
80 15 0.24
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATTGTG
CGAGATACTAATTCT
Found at i:86866167 original size:43 final size:42
Alignment explanation
Indices: 86866086--86866167 Score: 112
Period size: 42 Copynumber: 1.9 Consensus size: 42
86866076 TAAGGTGATG
* * *
86866086 TCTGGGACATTGGCATCGTATTTGATTTCGTGTAAGACCTTA
1 TCTGGGACAGTGGCATCGTATTTGATTACATGTAAGACCTTA
86866128 TCTGGGACAGTGGCATCG-ACGTTTGATTACATGTAAGACC
1 TCTGGGACAGTGGCATCGTA--TTTGATTACATGTAAGACC
86866168 AAGTCTGGGA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
41 1 0.03
42 17 0.49
43 17 0.49
ACGTcount: A:0.23, C:0.18, G:0.26, T:0.33
Consensus pattern (42 bp):
TCTGGGACAGTGGCATCGTATTTGATTACATGTAAGACCTTA
Found at i:86866175 original size:43 final size:43
Alignment explanation
Indices: 86866085--86866178 Score: 113
Period size: 43 Copynumber: 2.2 Consensus size: 43
86866075 GTAAGGTGAT
* * * *
86866085 GTCTGGGACATTGGCATCGTATTTGATTTCGTGTAAGACCTTA
1 GTCTGGGACAGTGGCATCGTATTTGATTACATGTAAGACCTAA
86866128 -TCTGGGACAGTGGCATCG-ACGTTTGATTACATGTAAGACC-AA
1 GTCTGGGACAGTGGCATCGTA--TTTGATTACATGTAAGACCTAA
86866170 GTCTGGGAC
1 GTCTGGGAC
86866179 GTTAGCATTG
Statistics
Matches: 44, Mismatches: 4, Indels: 6
0.81 0.07 0.11
Matches are distributed among these distances:
41 1 0.02
42 18 0.41
43 25 0.57
ACGTcount: A:0.23, C:0.18, G:0.28, T:0.31
Consensus pattern (43 bp):
GTCTGGGACAGTGGCATCGTATTTGATTACATGTAAGACCTAA
Found at i:86886064 original size:12 final size:12
Alignment explanation
Indices: 86886047--86886071 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86886037 AAATATAAGC
86886047 CAATACATTTGG
1 CAATACATTTGG
86886059 CAATACATTTGG
1 CAATACATTTGG
86886071 C
1 C
86886072 CAAATTCGTA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (12 bp):
CAATACATTTGG
Found at i:86900806 original size:24 final size:24
Alignment explanation
Indices: 86900779--86900938 Score: 85
Period size: 24 Copynumber: 6.6 Consensus size: 24
86900769 CAATCGATTT
86900779 CGCACACATAGTGCTATTCAAATC
1 CGCACACATAGTGCTATTCAAATC
* * ** * *
86900803 CGCACACTTAGTGCCACGCTAACC
1 CGCACACATAGTGCTATTCAAATC
**
86900827 CGCACACATAGTGCCT-TAGAAAT-
1 CGCACACATAGTG-CTATTCAAATC
* *
86900850 CGACACACTTGTATTGAC-ATTCAAATC
1 CG-CACAC--ATAGTG-CTATTCAAATC
* * *
86900877 AGCACACATGGTGCTATTCAATTC
1 CGCACACATAGTGCTATTCAAATC
* *
86900901 CACACACAT-GTGCCATTCAAAATC
1 CGCACACATAGTGCTATTC-AAATC
* *
86900925 CGTACACTTAGTGC
1 CGCACACATAGTGC
86900939 CAATGTCATT
Statistics
Matches: 97, Mismatches: 30, Indels: 17
0.67 0.21 0.12
Matches are distributed among these distances:
23 11 0.11
24 65 0.67
25 5 0.05
26 15 0.15
27 1 0.01
ACGTcount: A:0.31, C:0.30, G:0.14, T:0.24
Consensus pattern (24 bp):
CGCACACATAGTGCTATTCAAATC
Found at i:86905472 original size:40 final size:40
Alignment explanation
Indices: 86905248--86905472 Score: 260
Period size: 40 Copynumber: 5.7 Consensus size: 40
86905238 GCTCCTTGTT
* *
86905248 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* *
86905288 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
86905328 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* ** *
86905368 CCAATGCCTTCAAG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
86905407 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
86905448 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
86905473 CATCATTCAA
Statistics
Matches: 161, Mismatches: 18, Indels: 12
0.84 0.09 0.06
Matches are distributed among these distances:
38 1 0.01
39 31 0.19
40 117 0.73
41 12 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:86907243 original size:39 final size:40
Alignment explanation
Indices: 86907198--86907310 Score: 102
Period size: 40 Copynumber: 2.9 Consensus size: 40
86907188 TTCGGGGTTT
* * *
86907198 ACCCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTA
1 ACCCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTA
*** *
86907237 ACCCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTA
1 ACCCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTA
* ** * * *
86907277 GCCCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 ACCCGGATATAACCACTAGCATAAAGGCCTTCGG
86907311 ATCTTAGTCC
Statistics
Matches: 62, Mismatches: 11, Indels: 1
0.84 0.15 0.01
Matches are distributed among these distances:
39 17 0.27
40 45 0.73
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACCCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTA
Found at i:86907282 original size:40 final size:40
Alignment explanation
Indices: 86907223--86907367 Score: 175
Period size: 40 Copynumber: 3.6 Consensus size: 40
86907213 CTCGCACAAG
* * * * *
86907223 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
86907263 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
86907303 GCCTTC-GGATCTTAGTCCAGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
*
86907344 GCCTTCGGGACTTAGCCTGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
86907368 CATTCGAGTA
Statistics
Matches: 89, Mismatches: 13, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.65
41 25 0.28
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:86911320 original size:31 final size:31
Alignment explanation
Indices: 86911285--86911345 Score: 113
Period size: 31 Copynumber: 2.0 Consensus size: 31
86911275 TATTTCAGGC
*
86911285 ATACCGAGCTATGCAATATATTACTTAGATG
1 ATACCGAGCCATGCAATATATTACTTAGATG
86911316 ATACCGAGCCATGCAATATATTACTTAGAT
1 ATACCGAGCCATGCAATATATTACTTAGAT
86911346 TATTGATCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.36, C:0.18, G:0.15, T:0.31
Consensus pattern (31 bp):
ATACCGAGCCATGCAATATATTACTTAGATG
Found at i:86914413 original size:22 final size:22
Alignment explanation
Indices: 86914340--86914415 Score: 62
Period size: 24 Copynumber: 3.3 Consensus size: 22
86914330 AATAGGAGTT
*
86914340 TTCAATTATACAAAGCTCTAGG
1 TTCAATTATACAAAGCTCTAGA
* * * * *
86914362 TTCAATAACTCTCAGAGCTATGAGCT
1 TTCAATTA-T-ACAAAGCTCT-AG-A
86914388 TTCAATTATACAAAGCTCTAGA
1 TTCAATTATACAAAGCTCTAGA
86914410 TTCAAT
1 TTCAAT
86914416 AACTCTCAGA
Statistics
Matches: 40, Mismatches: 10, Indels: 8
0.69 0.17 0.14
Matches are distributed among these distances:
22 13 0.32
23 3 0.08
24 14 0.35
25 3 0.08
26 7 0.17
ACGTcount: A:0.36, C:0.20, G:0.12, T:0.33
Consensus pattern (22 bp):
TTCAATTATACAAAGCTCTAGA
Found at i:86914414 original size:48 final size:48
Alignment explanation
Indices: 86914339--86914431 Score: 168
Period size: 48 Copynumber: 1.9 Consensus size: 48
86914329 CAATAGGAGT
* *
86914339 TTTCAATTATACAAAGCTCTAGGTTCAATAACTCTCAGAGCTATGAGC
1 TTTCAATTATACAAAGCTCTAGATTCAATAACTCTCAGACCTATGAGC
86914387 TTTCAATTATACAAAGCTCTAGATTCAATAACTCTCAGACCTATG
1 TTTCAATTATACAAAGCTCTAGATTCAATAACTCTCAGACCTATG
86914432 TGATTGTTAT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 43 1.00
ACGTcount: A:0.34, C:0.22, G:0.12, T:0.32
Consensus pattern (48 bp):
TTTCAATTATACAAAGCTCTAGATTCAATAACTCTCAGACCTATGAGC
Found at i:86917706 original size:16 final size:16
Alignment explanation
Indices: 86917685--86917717 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
86917675 AAGTTATATA
86917685 TTTATTTACATTTCCT
1 TTTATTTACATTTCCT
86917701 TTTATTTACATTTCCT
1 TTTATTTACATTTCCT
86917717 T
1 T
86917718 GTTACTATCT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.18, C:0.18, G:0.00, T:0.64
Consensus pattern (16 bp):
TTTATTTACATTTCCT
Found at i:86918737 original size:27 final size:26
Alignment explanation
Indices: 86918659--86918746 Score: 104
Period size: 27 Copynumber: 3.3 Consensus size: 26
86918649 AGCATGGCTG
* *
86918659 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGGCAGAGCCA
* * *
86918685 CCAAATACAGATATTATGGTAGAGCCA
1 CCAGA-ACAGATATTGTGGCAGAGCCA
*
86918712 CCAGAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGGCAGAGCCA
86918739 CCAGAACA
1 CCAGAACA
86918747 CTTCCTCCAT
Statistics
Matches: 51, Mismatches: 9, Indels: 3
0.81 0.14 0.05
Matches are distributed among these distances:
26 11 0.22
27 40 0.78
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGGCAGAGCCA
Found at i:86919044 original size:27 final size:27
Alignment explanation
Indices: 86918933--86919047 Score: 115
Period size: 27 Copynumber: 4.3 Consensus size: 27
86918923 GGCAAAATGG
* * * *
86918933 TAATTTTACCCCACAAGGGTATCTCGA
1 TAATTTTACCCTACAGGGGTATTTCAA
* **
86918960 TAATTCTACCCTACAGGGGTATTTCGG
1 TAATTTTACCCTACAGGGGTATTTCAA
* * *
86918987 T-ATTTCTACCTTACAGGGGTATTTTAG
1 TAATTT-TACCCTACAGGGGTATTTCAA
*
86919014 TAATTTTACCCTATAGGGGTATTTCAA
1 TAATTTTACCCTACAGGGGTATTTCAA
86919041 TAATTTT
1 TAATTTT
86919048 GTAAATCGAT
Statistics
Matches: 73, Mismatches: 13, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
26 3 0.04
27 66 0.90
28 4 0.05
ACGTcount: A:0.26, C:0.18, G:0.17, T:0.39
Consensus pattern (27 bp):
TAATTTTACCCTACAGGGGTATTTCAA
Found at i:86922756 original size:23 final size:23
Alignment explanation
Indices: 86922691--86922758 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
86922681 ACTAATTTAC
*
86922691 CCTCCAAACACAACCATATATA-
1 CCTCCAAACAAAACCATATATAT
* * *
86922713 CCTCCAAACATAACTAAATATAT
1 CCTCCAAACAAAACCATATATAT
86922736 CCTCCAAACAAAACCATATATAT
1 CCTCCAAACAAAACCATATATAT
86922759 AAGCTTTGAA
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
22 19 0.49
23 20 0.51
ACGTcount: A:0.47, C:0.31, G:0.00, T:0.22
Consensus pattern (23 bp):
CCTCCAAACAAAACCATATATAT
Found at i:86922793 original size:23 final size:22
Alignment explanation
Indices: 86922667--86922808 Score: 115
Period size: 22 Copynumber: 6.2 Consensus size: 22
86922657 TAAAACTATC
* * *
86922667 ACCCACCAAACACAACTAATTT
1 ACCCTCCAAACACAACCAATAT
86922689 ACCCTCCAAACACAACCATATAT
1 ACCCTCCAAACACAACCA-ATAT
* *
86922712 A-CCTCCAAACATAACTAAATAT
1 ACCCTCCAAACACAAC-CAATAT
* *
86922734 ATCCTCCAAACAAAACCATATATAT
1 ACCCTCCAAACACAACC--A-ATAT
** ***
86922759 AAGCTTTGAACACAACCAAGTAT
1 ACCCTCCAAACACAACCAA-TAT
86922782 ACCCTCCAAACACAACCAATAT
1 ACCCTCCAAACACAACCAATAT
86922804 ACCCT
1 ACCCT
86922809 TCAACATATC
Statistics
Matches: 95, Mismatches: 18, Indels: 14
0.75 0.14 0.11
Matches are distributed among these distances:
22 43 0.45
23 36 0.38
24 1 0.01
25 15 0.16
ACGTcount: A:0.45, C:0.33, G:0.02, T:0.20
Consensus pattern (22 bp):
ACCCTCCAAACACAACCAATAT
Found at i:86922799 original size:48 final size:45
Alignment explanation
Indices: 86922672--86922804 Score: 142
Period size: 48 Copynumber: 2.9 Consensus size: 45
86922662 CTATCACCCA
*
86922672 CCAAACACAACTAATTTACCCTCCAAACACAACC-ATATATACCT
1 CCAAACACAACTAATATACCCTCCAAACACAACCAATATATACCT
* * * *
86922716 CCAAACATAACTAAATATATCCTCCAAACAAAACCATATATATAAGCT
1 CCAAACACAACT-AATATACCCTCCAAACACAACCA-ATATAT-ACCT
*** *
86922764 TTGAACACAACCAAGTATACCCTCCAAACACAACCAATATA
1 CCAAACACAACTAA-TATACCCTCCAAACACAACCAATATA
86922805 CCCTTCAACA
Statistics
Matches: 72, Mismatches: 12, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
44 11 0.15
45 19 0.26
47 13 0.18
48 29 0.40
ACGTcount: A:0.47, C:0.31, G:0.02, T:0.20
Consensus pattern (45 bp):
CCAAACACAACTAATATACCCTCCAAACACAACCAATATATACCT
Found at i:86924814 original size:34 final size:33
Alignment explanation
Indices: 86924774--86924847 Score: 89
Period size: 34 Copynumber: 2.2 Consensus size: 33
86924764 AATTTTATTT
86924774 AAAAATTTGAATAA-AAATT-TTAAAAACTAATTCC
1 AAAAATTT-AA-AATAAATTATTAAAAACTAATT-C
* *
86924808 AAAAATTTAAAATAAATTATTTAAAACTAATTT
1 AAAAATTTAAAATAAATTATTAAAAACTAATTC
86924841 AAAAATT
1 AAAAATT
86924848 AAATGTATAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
32 2 0.06
33 14 0.39
34 20 0.56
ACGTcount: A:0.58, C:0.05, G:0.01, T:0.35
Consensus pattern (33 bp):
AAAAATTTAAAATAAATTATTAAAAACTAATTC
Found at i:86931091 original size:46 final size:46
Alignment explanation
Indices: 86931024--86931197 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
86931014 TGTAACCCGC
*
86931024 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
* *
86931070 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGG--G--T-GTTCGCAT
* ***
86931120 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
*
86931163 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCG
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCG
86931198 AATGCTCAAC
Statistics
Matches: 108, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 1 0.01
45 2 0.02
46 61 0.56
47 28 0.26
48 3 0.03
49 1 0.01
50 4 0.04
51 3 0.03
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGGTGTTCGCAT
Found at i:86931143 original size:93 final size:93
Alignment explanation
Indices: 86931031--86931202 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
86931021 CGCCCATAAG
***
86931031 CGAACTCGGACTCAACTCAACGAGCTCGGGTGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
86931096 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGAATGCCTAGTTACATCTCA
*
86931124 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
86931189 ACGAGTTCGAATGC
66 ACGAGTTCGAATGC
86931203 TCAACCATCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.21, T:0.22
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGAATGCCTAGTTACATCTCA
Found at i:86938785 original size:120 final size:120
Alignment explanation
Indices: 86938572--86938797 Score: 443
Period size: 120 Copynumber: 1.9 Consensus size: 120
86938562 TATATGCAAT
86938572 CAAGCAATCATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 CAAGCAATCATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
*
86938637 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACATCTCA
66 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
86938692 CAAGCAATCATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 CAAGCAATCATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
86938757 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
66 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
86938798 TCAACCATCC
Statistics
Matches: 105, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 105 1.00
ACGTcount: A:0.29, C:0.31, G:0.21, T:0.19
Consensus pattern (120 bp):
CAAGCAATCATGTAACCCGCCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:86938813 original size:46 final size:46
Alignment explanation
Indices: 86938712--86938799 Score: 122
Period size: 46 Copynumber: 1.9 Consensus size: 46
86938702 TGTAACCCGC
* * * *
86938712 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
* *
86938758 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTC
86938800 AACCATCCTA
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
46 37 1.00
ACGTcount: A:0.27, C:0.31, G:0.23, T:0.19
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACGCTCCCAT
Found at i:86941762 original size:46 final size:46
Alignment explanation
Indices: 86941593--86941762 Score: 136
Period size: 46 Copynumber: 3.7 Consensus size: 46
86941583 TCTCGTAGTT
* * * *
86941593 GATGCATGTCCCAGACATGTCTTGCACTGGCT-TACAT-CTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTGGCTCT-CATAAT-GTGGCC
* * *
86941639 GATGCATGTCCCAGACATGTCATACACTAGCTCAAGTC-TCAA--T-ACC
1 GATGCATGTCCCAGACATGTCTTACACTGGCTC---TCAT-AATGTGGCC
* *
86941685 GATGCCATGTCTCAGACACGGTCTTACACTGGCTCTCATAATGTGGCC
1 GATG-CATGTCCCAGACA-TGTCTTACACTGGCTCTCATAATGTGGCC
*
86941733 GATGCATGTCCCATACATGTCTTACACTGG
1 GATGCATGTCCCAGACATGTCTTACACTGG
86941763 AACACAAATA
Statistics
Matches: 97, Mismatches: 15, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
45 4 0.04
46 47 0.48
47 24 0.25
48 20 0.21
49 1 0.01
50 1 0.01
ACGTcount: A:0.24, C:0.29, G:0.21, T:0.27
Consensus pattern (46 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCTCTCATAATGTGGCC
Found at i:86944403 original size:27 final size:27
Alignment explanation
Indices: 86944306--86944424 Score: 130
Period size: 27 Copynumber: 4.4 Consensus size: 27
86944296 GGATAAGTTA
* *
86944306 TAGAATTACCGAAATACCCCTGTAGGA
1 TAGAATTACCAAAATACCCCTGTAGGG
**
86944333 TAGAATTACCAAAATACCTTTGTAGGG
1 TAGAATTACCAAAATACCCCTGTAGGG
* *
86944360 TAGAAATACAAAAATACCCCTGTAGGG
1 TAGAATTACCAAAATACCCCTGTAGGG
* * * **
86944387 TAGAATTATCGAGATACCTTTGTAGGG
1 TAGAATTACCAAAATACCCCTGTAGGG
*
86944414 TAAAATTACCA
1 TAGAATTACCA
86944425 TTTAGCCCCT
Statistics
Matches: 74, Mismatches: 18, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 74 1.00
ACGTcount: A:0.39, C:0.17, G:0.18, T:0.26
Consensus pattern (27 bp):
TAGAATTACCAAAATACCCCTGTAGGG
Found at i:86944434 original size:54 final size:54
Alignment explanation
Indices: 86944317--86944419 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 54
86944307 AGAATTACCG
86944317 AAATACCCCTGTAGGATAGAATTACCAAAATACCTTTGTAGGGTAGAAATACAA
1 AAATACCCCTGTAGGATAGAATTACCAAAATACCTTTGTAGGGTAGAAATACAA
* * * *
86944371 AAATACCCCTGTAGGGTAGAATTATCGAGATACCTTTGTAGGGTA-AAAT
1 AAATACCCCTGTAGGATAGAATTACCAAAATACCTTTGTAGGGTAGAAAT
86944420 TACCATTTAG
Statistics
Matches: 45, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
53 4 0.09
54 41 0.91
ACGTcount: A:0.39, C:0.16, G:0.19, T:0.26
Consensus pattern (54 bp):
AAATACCCCTGTAGGATAGAATTACCAAAATACCTTTGTAGGGTAGAAATACAA
Found at i:86945193 original size:26 final size:27
Alignment explanation
Indices: 86945164--86945223 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
86945154 CCACATATAT
*
86945164 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
86945190 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
86945217 ATATCTG
1 ATATCTG
86945224 GCAGCCTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:86945243 original size:98 final size:98
Alignment explanation
Indices: 86945074--86945533 Score: 868
Period size: 98 Copynumber: 4.7 Consensus size: 98
86945064 CTTACTGCAA
* *
86945074 TCTGGTGGCCTCGCCACATATATCTGT-TTTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTA
1 TCTGGTGGCCTAGCCACA-ATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTA
86945138 CAATCTGAAGGCTTCGCCACATATATATATCTGT
65 CAATCTGAAGGCTTCGCCACATATATATATCTGT
86945172 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
86945237 AATCTGAAGGCTTCGCCACATATATATATCTGT
66 AATCTGAAGGCTTCGCCACATATATATATCTGT
86945270 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
86945335 AATCTGAAGGCTTCGCCACATATATATATCTGT
66 AATCTGAAGGCTTCGCCACATATATATATCTGT
86945368 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
86945433 AATCTGAAGGCTTCGCCACATATATATATCTGT
66 AATCTGAAGGCTTCGCCACATATATATATCTGT
* *
86945466 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTCGCTGC
1 TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
86945531 AAT
66 AAT
86945534 TTCTGTGGTG
Statistics
Matches: 357, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
97 8 0.02
98 349 0.98
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (98 bp):
TCTGGTGGCCTAGCCACAATATCTGTATCTGGTGACTTCGTCACAATATCTGGCAGCCTTGCTAC
AATCTGAAGGCTTCGCCACATATATATATCTGT
Found at i:86945291 original size:26 final size:27
Alignment explanation
Indices: 86945262--86945321 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
86945252 CCACATATAT
*
86945262 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
86945288 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
86945315 ATATCTG
1 ATATCTG
86945322 GCAGCCTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:86945389 original size:26 final size:27
Alignment explanation
Indices: 86945360--86945419 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
86945350 CCACATATAT
*
86945360 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
86945386 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
86945413 ATATCTG
1 ATATCTG
86945420 GCAGCCTTGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:86945487 original size:26 final size:27
Alignment explanation
Indices: 86945458--86945517 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
86945448 CCACATATAT
*
86945458 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
86945484 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
86945511 ATATCTG
1 ATATCTG
86945518 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:86945592 original size:25 final size:25
Alignment explanation
Indices: 86945555--86945608 Score: 99
Period size: 25 Copynumber: 2.2 Consensus size: 25
86945545 GTAGCGATTG
*
86945555 GGTGGGTCGAGTAGTCTCCCCACAT
1 GGTGGGTCAAGTAGTCTCCCCACAT
86945580 GGTGGGTCAAGTAGTCTCCCCACAT
1 GGTGGGTCAAGTAGTCTCCCCACAT
86945605 GGTG
1 GGTG
86945609 TAAGGCTGGT
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
25 28 1.00
ACGTcount: A:0.17, C:0.26, G:0.33, T:0.24
Consensus pattern (25 bp):
GGTGGGTCAAGTAGTCTCCCCACAT
Found at i:86951896 original size:27 final size:27
Alignment explanation
Indices: 86951866--86952098 Score: 297
Period size: 27 Copynumber: 8.6 Consensus size: 27
86951856 ATATTGAGTC
* * *
86951866 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
* * *
86951893 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
86951920 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
86951948 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTCAACT
86951975 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AACT
** * *
86952003 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAACT
* **
86952030 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAACT
* *
86952057 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAACT
86952084 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86952099 GTACAATTTA
Statistics
Matches: 183, Mismatches: 19, Indels: 8
0.87 0.09 0.04
Matches are distributed among these distances:
27 132 0.72
28 51 0.28
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAACT
Found at i:86951958 original size:55 final size:54
Alignment explanation
Indices: 86951866--86952098 Score: 306
Period size: 55 Copynumber: 4.3 Consensus size: 54
86951856 ATATTGAGTC
* * * * *
86951866 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAAT
*
86951920 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAAT
** * *
86951975 CGCACACTTAGTGCTACATAGTCAAACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTC-AACTCGCACACTTAGTGCTACATAGTCAAAT
* ** *
86952030 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTA-CATAGTCAACTCGCACACTTAGTGCTACATAGTCAAAT
86952084 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86952099 GTACAATTTA
Statistics
Matches: 159, Mismatches: 17, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
54 60 0.38
55 99 0.62
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAAT
Found at i:86952033 original size:82 final size:82
Alignment explanation
Indices: 86951866--86952097 Score: 315
Period size: 82 Copynumber: 2.8 Consensus size: 82
86951856 ATATTGAGTC
* * * *
86951866 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAG
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAATCGCACACTTAG
*
86951931 TGCTACATAGTCAAACT
66 TGCCACATAGTCAAACT
*
86951948 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAGTCAAACTCGCACACTTA
1 CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAA-TCGCACACTTA
* * *
86952013 GTGCCGCATGGTC-AATT
65 GTGCCACATAGTCAAACT
* ** *
86952030 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCACACTTA
1 CGCACACTTAGTGCTA-CATAATCAACTCGCACACTTAGTGCTACATAGTCAAATCGCACACTTA
86952094 GTGC
65 GTGC
86952098 TGTACAATTT
Statistics
Matches: 135, Mismatches: 13, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
81 16 0.12
82 98 0.73
83 21 0.16
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.26
Consensus pattern (82 bp):
CGCACACTTAGTGCTACATAATCAACTCGCACACTTAGTGCTACATAGTCAAATCGCACACTTAG
TGCCACATAGTCAAACT
Found at i:86954657 original size:27 final size:27
Alignment explanation
Indices: 86954618--86954736 Score: 148
Period size: 27 Copynumber: 4.4 Consensus size: 27
86954608 TGGATAAGTT
*
86954618 GTAGAATTACCGAAATACCCCTATAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* *
86954645 ATAGAATTACCGAAATACCCTTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
86954672 GTAGAAATATCAAAATACCCCTGTAGG
1 GTAGAATTACCGAAATACCCCTGTAGG
* * *
86954699 GTAGAATTACCGAGATACCCTTGTGGG
1 GTAGAATTACCGAAATACCCCTGTAGG
*
86954726 GTAAAATTACC
1 GTAGAATTACC
86954737 ATTTTGCCCC
Statistics
Matches: 77, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 77 1.00
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.24
Consensus pattern (27 bp):
GTAGAATTACCGAAATACCCCTGTAGG
Found at i:86960063 original size:19 final size:20
Alignment explanation
Indices: 86960039--86960076 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
86960029 GGTACCACCA
86960039 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
86960058 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
86960077 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:86960372 original size:46 final size:46
Alignment explanation
Indices: 86960305--86960475 Score: 191
Period size: 46 Copynumber: 3.7 Consensus size: 46
86960295 CGCCCCTAAG
* * *
86960305 TGAACTCGGACCCAACTCAACGAGCTCGGGTGTTCGCATCCATAAA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAA
* * * * **
86960351 TGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAG-TTACATCTCA
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG-TTCGCATCCAT-AAA
* * ** *
86960398 CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAA
86960444 TGAACTCGGACTCAACTCAACGAGTTCGGATG
1 TGAACTCGGACTCAACTCAACGAGTTCGGATG
86960476 CTCAACCATC
Statistics
Matches: 98, Mismatches: 24, Indels: 6
0.77 0.19 0.05
Matches are distributed among these distances:
46 63 0.64
47 35 0.36
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
TGAACTCGGACTCAACTCAACGAGTTCGGATGTTCGCATCCATAAA
Found at i:86960421 original size:93 final size:93
Alignment explanation
Indices: 86960306--86960476 Score: 279
Period size: 93 Copynumber: 1.8 Consensus size: 93
86960296 GCCCCTAAGT
* ***
86960306 GAACTCGGACCCAACTCAACGAGCTCGGGTGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
86960371 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* * *
86960399 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
86960464 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86960477 TCAACCATCC
Statistics
Matches: 71, Mismatches: 7, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
93 71 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACCCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86960950 original size:41 final size:40
Alignment explanation
Indices: 86960894--86960981 Score: 140
Period size: 41 Copynumber: 2.2 Consensus size: 40
86960884 GACCCAAAAT
* *
86960894 CATATTTTTGAAAAATTATAGTTTTGCCCCTAAACTTTTG
1 CATATTTTGGAAAAATTACAGTTTTGCCCCTAAACTTTTG
*
86960934 CATATTCTTGGAAAAATTACAGTTTTGCCCCTAAATTTTTG
1 CATATT-TTGGAAAAATTACAGTTTTGCCCCTAAACTTTTG
86960975 CATATTT
1 CATATTT
86960982 ACACTTTTTC
Statistics
Matches: 44, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
40 7 0.16
41 37 0.84
ACGTcount: A:0.30, C:0.16, G:0.10, T:0.44
Consensus pattern (40 bp):
CATATTTTGGAAAAATTACAGTTTTGCCCCTAAACTTTTG
Found at i:86965660 original size:19 final size:20
Alignment explanation
Indices: 86965636--86965673 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
86965626 GGTACCACCA
86965636 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
86965655 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
86965674 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:86966014 original size:93 final size:93
Alignment explanation
Indices: 86965903--86966073 Score: 297
Period size: 93 Copynumber: 1.8 Consensus size: 93
86965893 GCCCCTAAGT
* * *
86965903 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAATGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
86965968 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
86965996 GAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
86966061 CGAGTTCGGATGC
66 CGAGTTCGGATGC
86966074 TCAACCATCC
Statistics
Matches: 73, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.21
Consensus pattern (93 bp):
GAACTCAGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAATGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:86966070 original size:46 final size:46
Alignment explanation
Indices: 86965898--86966070 Score: 201
Period size: 46 Copynumber: 3.7 Consensus size: 46
86965888 AACCCGCCCC
* * *
86965898 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
86965944 TAAATGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* * *
86965992 TCA-CGAACTCAGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
86966037 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
86966071 TGCTCAACCA
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 59 0.56
47 28 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.28, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:86970235 original size:28 final size:28
Alignment explanation
Indices: 86970203--86970272 Score: 106
Period size: 28 Copynumber: 2.5 Consensus size: 28
86970193 AATGAGATTG
*
86970203 GCACTAAGTGTGCGAGTTTAATT-GTATA
1 GCACTAAGTGTGCGAGTTTAATTATTA-A
*
86970231 GCACTAAGTGTGCGAGTTTGATTATTAA
1 GCACTAAGTGTGCGAGTTTAATTATTAA
86970259 GCACTAAGTGTGCG
1 GCACTAAGTGTGCG
86970273 GACTTACTAT
Statistics
Matches: 39, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
28 37 0.95
29 2 0.05
ACGTcount: A:0.27, C:0.13, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTAATTATTAA
Found at i:86978911 original size:28 final size:27
Alignment explanation
Indices: 86978848--86978999 Score: 223
Period size: 27 Copynumber: 5.6 Consensus size: 27
86978838 ATATTAAGTC
* *
86978848 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
86978875 CGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
*
86978903 CGCACACTTAGTGCTACATAGTCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
86978930 CCCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
86978958 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
86978985 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
86979000 GCACAATTTA
Statistics
Matches: 117, Mismatches: 6, Indels: 4
0.92 0.05 0.03
Matches are distributed among these distances:
27 65 0.56
28 52 0.44
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:86978936 original size:55 final size:55
Alignment explanation
Indices: 86978848--86979024 Score: 255
Period size: 55 Copynumber: 3.2 Consensus size: 55
86978838 ATATTAAGTC
* * *
86978848 CGCACACTCAGTGCTATATAATCAACTCGCACACTTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* *
86978903 CGCACACTTAGTGCTACATAGTCAACTCCCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
* * * * *
86978958 CGCACACTTAGTGCTACATAGTCAATTCGCACACTTAGTGCTGCACAATTTAAACC
1 CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAA-TCAAACT
86979014 CGCACACTTAG
1 CGCACACTTAG
86979025 CGCCAATCTC
Statistics
Matches: 109, Mismatches: 12, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
55 93 0.85
56 16 0.15
ACGTcount: A:0.32, C:0.30, G:0.13, T:0.25
Consensus pattern (55 bp):
CGCACACTTAGTGCTACATAGTCAACTCGCACACTTAGTGCTACATAATCAAACT
Found at i:86982239 original size:27 final size:27
Alignment explanation
Indices: 86982208--86982385 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
86982198 TAAATTGTAC
86982208 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
86982235 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
86982261 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
86982289 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
86982317 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * * *
86982344 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
86982371 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
86982386 GACTCAATAT
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 104 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:86982376 original size:82 final size:81
Alignment explanation
Indices: 86982205--86982385 Score: 222
Period size: 82 Copynumber: 2.2 Consensus size: 81
86982195 GATTAAATTG
* *
86982205 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
86982270 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
86982286 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
86982350 AAGTGTGC-AAGTTGATTA
64 AAGTGTGCGAA-TTGACCA
* *
86982368 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
86982386 GACTCAATAT
Statistics
Matches: 84, Mismatches: 13, Indels: 5
0.82 0.13 0.05
Matches are distributed among these distances:
81 20 0.24
82 64 0.76
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Done.