Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 254 of 297
Found at i:86983616 original size:200 final size:200
Alignment explanation
Indices: 86983273--86983673 Score: 775
Period size: 200 Copynumber: 2.0 Consensus size: 200
86983263 TGTGGGACAG
*
86983273 GGCCAGAACGGTTTCTGGATTCCCTGCTCCGACTTTGGAAATTCATTATAAATTAACCACAGATA
1 GGCCAGAACGGTTTCTGGATTCCCTGCTCCGAATTTGGAAATTCATTATAAATTAACCACAGATA
86983338 ATTAGGGGTCGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGC
66 ATTAGGGGTCGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGC
86983403 ATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGGGCAAAGGCCAGTGTAGTCGA
131 ATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGGGCAAAGGCCAGTGTAGTCGA
86983468 CCCCT
196 CCCCT
*
86983473 GGCCAGAACGGTTTCTGGATTCCCTGCTCCGAATTTGGAAATTCATTATAAATTAACCAGAGATA
1 GGCCAGAACGGTTTCTGGATTCCCTGCTCCGAATTTGGAAATTCATTATAAATTAACCACAGATA
86983538 ATTAGGGGTCGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGC
66 ATTAGGGGTCGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGC
*
86983603 ATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGGGCAAAGGTCAGTGTAGTCGA
131 ATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGGGCAAAGGCCAGTGTAGTCGA
86983668 CCCCT
196 CCCCT
86983673 G
1 G
86983674 CAACATGGGA
Statistics
Matches: 198, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
200 198 1.00
ACGTcount: A:0.29, C:0.22, G:0.23, T:0.27
Consensus pattern (200 bp):
GGCCAGAACGGTTTCTGGATTCCCTGCTCCGAATTTGGAAATTCATTATAAATTAACCACAGATA
ATTAGGGGTCGTACCATATATGTACAGATTCCTCTCTGAGTCTAGTTTTCATAGAAACAAACGGC
ATCAGTATTGAAGCCCCGTGCAGGGAGATATCCAAGTCGTAATGGGCAAAGGCCAGTGTAGTCGA
CCCCT
Found at i:86985956 original size:19 final size:20
Alignment explanation
Indices: 86985928--86985966 Score: 62
Period size: 19 Copynumber: 2.0 Consensus size: 20
86985918 AAATTAGTTA
*
86985928 AGTTGTTATTTAA-GTTGTT
1 AGTTGCTATTTAATGTTGTT
86985947 AGTTGCTATTTAATGTTGTT
1 AGTTGCTATTTAATGTTGTT
86985967 TAAATGTTAT
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
19 12 0.67
20 6 0.33
ACGTcount: A:0.21, C:0.03, G:0.21, T:0.56
Consensus pattern (20 bp):
AGTTGCTATTTAATGTTGTT
Found at i:86989447 original size:42 final size:43
Alignment explanation
Indices: 86989370--86989471 Score: 118
Period size: 42 Copynumber: 2.4 Consensus size: 43
86989360 TCTCGGACGT
* * **
86989370 GGTCTTACATGTAATTCAATATCGATGCCTCTGTCCCAAACAA
1 GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAAACAA
* *
86989413 GGTCTTACACG-AAATCAGATAT-GATGCCGATGTCCCAGACAT
1 GGTCTTACACGTAAATCA-ATATCGATGCCGATGTCCCAAACAA
*
86989455 GGTCTTATACGTAAATC
1 GGTCTTACACGTAAATC
86989472 TCAATCGAGG
Statistics
Matches: 50, Mismatches: 7, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
42 31 0.62
43 19 0.38
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28
Consensus pattern (43 bp):
GGTCTTACACGTAAATCAATATCGATGCCGATGTCCCAAACAA
Found at i:86992589 original size:44 final size:44
Alignment explanation
Indices: 86992522--86993044 Score: 681
Period size: 44 Copynumber: 12.1 Consensus size: 44
86992512 AGGAACACCG
* *
86992522 ATCTGTTATTTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * *
86992566 ATCTGTTATCTTCTG-TCTACTCTCTGCCACTACAGAGATGCCAA
1 ATCTGTTATCTTC-GATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
86992610 ATCTGTTATCTTCGATCTGCTCTCCACTGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
86992654 ATCTGTTATCTTCGATCTGTTCTCTGCC-CTTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGC-TACAGAGACGCCAA
*
86992698 ATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
*
86992738 ATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * *
86992782 ATCTGTTATCGTCGATCTGCTCT-CGCCGCTATAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* * * * *
86992825 ATCTATTATCTTCGATCTGCTTTCCACCACTACAAAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *** *
86992869 ATCTATTATCTTCGATCTGCTCTCTATCACTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
86992913 ATCTGTTATCTTTGATCTGCTCTCCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
* *
86992957 ATCTGTTATCTTCGATCTGCTCTTCGCCGCTACAGAGATGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
86993001 ATC----ATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
1 ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
86993041 ATCT
1 ATCT
86993045 ATTGTCTGTT
Statistics
Matches: 423, Mismatches: 46, Indels: 23
0.86 0.09 0.05
Matches are distributed among these distances:
40 74 0.17
41 1 0.00
43 40 0.09
44 307 0.73
45 1 0.00
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (44 bp):
ATCTGTTATCTTCGATCTGCTCTCCGCCGCTACAGAGACGCCAA
Found at i:86992949 original size:259 final size:257
Alignment explanation
Indices: 86992522--86993044 Score: 750
Period size: 259 Copynumber: 2.0 Consensus size: 257
86992512 AGGAACACCG
** *
86992522 ATCTGTTATTTTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTGTTATCTTCTGTCTACT
1 ATCTGTTATCGTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATTATCTTCTGTCTACT
** * * * *
86992587 CTCTGCCACTACAGAGATGCCAAATCTGTTATCTTCGATCTGCTCTCCACTGCTACAGAGACGCC
66 CTCCACCACTACAAAGACGCCAAATCTATTATCTTCGATCTGCTCTCCACTACTACAGAGACGCC
* *
86992652 AAATCTGTTATCTTCGATCTGTTCTCTGCCCTTACAGAGATGCCAAATC-ATCTTCGATCTGCTC
131 AAATCTGTTATCTTCGATCTGCTCTCCGCCCTTACAGAGATGCCAAATCTATCTTCGATCTGCTC
86992716 TCCGCCGCTACAGAGATGCCAAATCTGTTATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCA
196 TCCGCCGCTACAGAGATGCCAAATC----ATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCA
86992781 A
257 A
* * *
86992782 ATCTGTTATCGTCGATCTGCTCTC-GCCGCTATAGAGATGCCAAATCTATTATCTTC-GATCTGC
1 ATCTGTTATCGTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATTATCTTCTG-TCTAC
* *
86992845 TTTCCACCACTACAAAGACGCCAAATCTATTATCTTCGATCTGCTCTCTA-TCACTACAGAGACG
65 TCTCCACCACTACAAAGACGCCAAATCTATTATCTTCGATCTGCTCTCCACT-ACTACAGAGACG
*
86992909 CCAAATCTGTTATCTTTGATCTGCTCTCCGCCGC-TACAGAGATGCCAAATCTGTTATCTTCGAT
129 CCAAATCTGTTATCTTCGATCTGCTCTCCGCC-CTTACAGAGATGCCAAATC---TATCTTCGAT
* *
86992973 CTGCTCTTCGCCGCTACAGAGATGCCAAATCATCTTCGATCTGCTCTCCGCCGCTACAGAGACGC
190 CTGCTCTCCGCCGCTACAGAGATGCCAAATCATCTTCGATCTACTCTCCGCCGCTACAGAGACGC
86993038 CAA
255 CAA
86993041 ATCT
1 ATCT
86993045 ATTGTCTGTT
Statistics
Matches: 237, Mismatches: 19, Indels: 15
0.87 0.07 0.06
Matches are distributed among these distances:
258 2 0.01
259 173 0.73
260 23 0.10
263 39 0.16
ACGTcount: A:0.23, C:0.31, G:0.16, T:0.30
Consensus pattern (257 bp):
ATCTGTTATCGTCGATCTGCTCTCTGCCGCTACAGAGACGCCAAATCTATTATCTTCTGTCTACT
CTCCACCACTACAAAGACGCCAAATCTATTATCTTCGATCTGCTCTCCACTACTACAGAGACGCC
AAATCTGTTATCTTCGATCTGCTCTCCGCCCTTACAGAGATGCCAAATCTATCTTCGATCTGCTC
TCCGCCGCTACAGAGATGCCAAATCATCTTCGATCTACTCTCCGCCGCTACAGAGACGCCAA
Found at i:86998167 original size:30 final size:30
Alignment explanation
Indices: 86998072--86998168 Score: 88
Period size: 30 Copynumber: 3.2 Consensus size: 30
86998062 AGCTCACTCC
*
86998072 TAGCTC-ACTTTCAACTCACGAGCTAAACCT
1 TAGCTCAACTTT-AGCTCACGAGCTAAACCT
* * * * * *
86998102 TAGCTCAACTTCAGCTTAGGAGTTTAATCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* * *
86998132 CAGCTCAACTTTAGCTCACAAGCTAAAGCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
86998162 TAGCTCA
1 TAGCTCA
86998169 TTTTAGTTTA
Statistics
Matches: 50, Mismatches: 16, Indels: 2
0.74 0.24 0.03
Matches are distributed among these distances:
30 46 0.92
31 4 0.08
ACGTcount: A:0.30, C:0.28, G:0.13, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:86999554 original size:41 final size:41
Alignment explanation
Indices: 86999491--86999573 Score: 130
Period size: 41 Copynumber: 2.0 Consensus size: 41
86999481 TAGGGCCCCT
*
86999491 CTTCCAATCGTTAACTGAAGGCTCATCCTCGTGGTTTTGGA
1 CTTCCAATCGTCAACTGAAGGCTCATCCTCGTGGTTTTGGA
* * *
86999532 CTTCCGATCGTCAGCTGGAGGCTCATCCTCGTGGTTTTGGA
1 CTTCCAATCGTCAACTGAAGGCTCATCCTCGTGGTTTTGGA
86999573 C
1 C
86999574 AATTTTGGCA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.16, C:0.27, G:0.25, T:0.33
Consensus pattern (41 bp):
CTTCCAATCGTCAACTGAAGGCTCATCCTCGTGGTTTTGGA
Found at i:87000414 original size:14 final size:13
Alignment explanation
Indices: 87000363--87000417 Score: 56
Period size: 14 Copynumber: 4.0 Consensus size: 13
87000353 GTAGAAAGAG
*
87000363 GGGTACGAACAGAA
1 GGGTAGGAACA-AA
*
87000377 TGGTAGGAACGAAA
1 GGGTAGGAAC-AAA
87000391 GGGTAGGAACAAA
1 GGGTAGGAACAAA
*
87000404 GGGATATGAACAAA
1 GGG-TAGGAACAAA
87000418 TTGGTCAGTT
Statistics
Matches: 35, Mismatches: 4, Indels: 4
0.81 0.09 0.09
Matches are distributed among these distances:
13 6 0.17
14 28 0.80
15 1 0.03
ACGTcount: A:0.45, C:0.09, G:0.35, T:0.11
Consensus pattern (13 bp):
GGGTAGGAACAAA
Found at i:87003166 original size:37 final size:37
Alignment explanation
Indices: 87003116--87003194 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
87003106 TTATTACGAA
* *
87003116 GTCTTACCCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
87003153 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
87003190 GTCTT
1 GTCTT
87003195 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 36 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:87003463 original size:47 final size:47
Alignment explanation
Indices: 87003314--87003691 Score: 614
Period size: 47 Copynumber: 8.1 Consensus size: 47
87003304 CCTTCGGGAA
* * * * * * *
87003314 TTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
87003361 CTGTCACATATATACACTTTCACATTCA-CACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
87003407 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
87003454 TTATTACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
87003501 TTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
* *
87003548 TTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
*
87003595 TTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
87003642 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
1 TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
87003689 TTA
1 TTA
87003692 CTATCATTTC
Statistics
Matches: 313, Mismatches: 17, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
46 40 0.13
47 273 0.87
ACGTcount: A:0.29, C:0.30, G:0.09, T:0.32
Consensus pattern (47 bp):
TTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCC
Found at i:87007886 original size:20 final size:20
Alignment explanation
Indices: 87007861--87007915 Score: 74
Period size: 20 Copynumber: 2.8 Consensus size: 20
87007851 TGTGGTTCAA
*
87007861 CTCATTCGAGCTCAAGTTAG
1 CTCATTCGAGCTCAAGTCAG
*
87007881 CTCATTCGTGCTCAAGTCAG
1 CTCATTCGAGCTCAAGTCAG
* *
87007901 GTCATTCAAGCTCAA
1 CTCATTCGAGCTCAA
87007916 TTTAACTCGT
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.25, C:0.27, G:0.18, T:0.29
Consensus pattern (20 bp):
CTCATTCGAGCTCAAGTCAG
Found at i:87012142 original size:15 final size:15
Alignment explanation
Indices: 87012109--87012141 Score: 52
Period size: 13 Copynumber: 2.3 Consensus size: 15
87012099 GACGTAAGCA
87012109 TTTTTCTATACTCTT
1 TTTTTCTATACTCTT
87012124 TTTTTC--TACTCTT
1 TTTTTCTATACTCTT
87012137 TTTTT
1 TTTTT
87012142 TCGGATCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 12 0.67
15 6 0.33
ACGTcount: A:0.09, C:0.18, G:0.00, T:0.73
Consensus pattern (15 bp):
TTTTTCTATACTCTT
Found at i:87014699 original size:14 final size:14
Alignment explanation
Indices: 87014680--87014707 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
87014670 TGTATGATAT
87014680 GAGTCACAAAGGCC
1 GAGTCACAAAGGCC
87014694 GAGTCACAAAGGCC
1 GAGTCACAAAGGCC
87014708 CAACCCAAGC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.29, G:0.29, T:0.07
Consensus pattern (14 bp):
GAGTCACAAAGGCC
Found at i:87018229 original size:27 final size:27
Alignment explanation
Indices: 87018198--87018375 Score: 196
Period size: 27 Copynumber: 6.6 Consensus size: 27
87018188 TAAATTGTAC
*
87018198 AGCACTAAGTGTGCGATTTAACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
87018225 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87018251 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
87018279 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
87018307 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
87018334 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
87018361 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
87018376 GACTCAATAT
Statistics
Matches: 128, Mismatches: 20, Indels: 6
0.83 0.13 0.04
Matches are distributed among these distances:
27 105 0.82
28 23 0.18
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:87018315 original size:82 final size:81
Alignment explanation
Indices: 87018199--87018354 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
87018189 AAATTGTACA
* *
87018199 GCACTAAGTGTGCGATTTAACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
87018263 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
* ** *
87018280 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
87018345 TGCGAGTTGA
65 TGCGAATTGA
87018355 TTATATAGCA
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 15 0.23
82 50 0.76
83 1 0.02
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:87018366 original size:82 final size:81
Alignment explanation
Indices: 87018195--87018375 Score: 220
Period size: 82 Copynumber: 2.2 Consensus size: 81
87018185 GATTAAATTG
* *
87018195 TACAGCACTAAGTGTGCGATTTAACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
87018260 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * ** *
87018276 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
87018340 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
87018358 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
87018376 GACTCAATAT
Statistics
Matches: 83, Mismatches: 15, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
81 18 0.22
82 65 0.78
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTAACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:87018762 original size:44 final size:44
Alignment explanation
Indices: 87018699--87018786 Score: 167
Period size: 44 Copynumber: 2.0 Consensus size: 44
87018689 AATCGATAGG
87018699 TTGGAAGACCTATGGTGTGGTTCGGTATGGATGGAGTAAATTGT
1 TTGGAAGACCTATGGTGTGGTTCGGTATGGATGGAGTAAATTGT
*
87018743 TTGGAAGGCCTATGGTGTGGTTCGGTATGGATGGAGTAAATTGT
1 TTGGAAGACCTATGGTGTGGTTCGGTATGGATGGAGTAAATTGT
87018787 CTCGTTCCAT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 43 1.00
ACGTcount: A:0.22, C:0.07, G:0.38, T:0.34
Consensus pattern (44 bp):
TTGGAAGACCTATGGTGTGGTTCGGTATGGATGGAGTAAATTGT
Found at i:87022198 original size:29 final size:28
Alignment explanation
Indices: 87022155--87022232 Score: 95
Period size: 29 Copynumber: 2.7 Consensus size: 28
87022145 TCATGAGATT
87022155 GGCACTAAGTGTGCGGGTTTAAATTGTACA
1 GGCACTAAGTGTGCGGGTTTAAA--GTACA
* *
87022185 -GCACTAAGTGTGCGAGTTTACAGTACA
1 GGCACTAAGTGTGCGGGTTTAAAGTACA
87022212 TGGCACTAAGTGTGCGCGGTT
1 -GGCACTAAGTGTGCG-GGTT
87022233 GATTATTAAG
Statistics
Matches: 42, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
27 5 0.12
29 34 0.81
30 3 0.07
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (28 bp):
GGCACTAAGTGTGCGGGTTTAAAGTACA
Found at i:87022485 original size:174 final size:174
Alignment explanation
Indices: 87022187--87022512 Score: 501
Period size: 174 Copynumber: 1.9 Consensus size: 174
87022177 ATTGTACAGC
* * * *
87022187 ACTAAGTGTGCGAGTTTACAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATGTG
1 ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
* * ** *
87022252 TGTGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACTTTACCGAGTCGATT
66 TGTCAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAATT
87022317 TTGGACAGCGGAAAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
131 TTGGACAGCGG-AAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
* * * * *
87022362 ACTAAGTGTGTGAGTTTAAAGTGCATGGCACTGAGTGTGCGTGGGTGATTACTAAACATTATGTG
1 ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
*
87022427 TG-CAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGGCTTTACCGAGTCAATT
66 TGTCAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAATT
87022491 TTGGACAGCGGAAAAGGTAAGT
131 TTGGACAGCGGAAAAGGTAAGT
87022513 ACCTTGAGTT
Statistics
Matches: 136, Mismatches: 15, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
173 11 0.08
174 67 0.49
175 58 0.43
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (174 bp):
ACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGGTGATTACTAAACACTATGTG
TGTCAACCCAATATATATTTTCCATAAATTATTTACACGAAGGGTGCGACTTTACCGAGTCAATT
TTGGACAGCGGAAAAGGTAAGTGTGCGAACTTGAAATGCATGGT
Found at i:87026865 original size:21 final size:21
Alignment explanation
Indices: 87026839--87026885 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
87026829 AAGTGTACTG
*
87026839 TACTGGTAGCTCTGCTGCAAT
1 TACTGGCAGCTCTGCTGCAAT
* *
87026860 TACTGGCAGCTTTGCTGTAAT
1 TACTGGCAGCTCTGCTGCAAT
87026881 TACTG
1 TACTG
87026886 AATAGTGCCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.19, C:0.21, G:0.23, T:0.36
Consensus pattern (21 bp):
TACTGGCAGCTCTGCTGCAAT
Found at i:87036668 original size:39 final size:39
Alignment explanation
Indices: 87036593--87036745 Score: 173
Period size: 39 Copynumber: 3.9 Consensus size: 39
87036583 TCACCACTAC
* * *
87036593 AAAGCATGCGGGACTTTAAGCCCTGATATAATACCAGCAC-
1 AAAGCCTGCGGGAC-TT-AGCCCGGATATAACACCAGCACG
87036633 AAAGCCTGCGGGACTTTAGCCCGGATATAACACCAGCACG
1 AAAGCCTGCGGGAC-TTAGCCCGGATATAACACCAGCACG
* * * * *
87036673 AATGCCTTCAGGACTTAGCCCGGATATAACGCCAACACG
1 AAAGCCTGCGGGACTTAGCCCGGATATAACACCAGCACG
* * *
87036712 AATGCCTTCGGGACTTAGCCTGGATATAACACCA
1 AAAGCCTGCGGGACTTAGCCCGGATATAACACCA
87036746 TTATAAAGTC
Statistics
Matches: 101, Mismatches: 11, Indels: 3
0.88 0.10 0.03
Matches are distributed among these distances:
39 74 0.73
40 27 0.27
ACGTcount: A:0.31, C:0.28, G:0.22, T:0.19
Consensus pattern (39 bp):
AAAGCCTGCGGGACTTAGCCCGGATATAACACCAGCACG
Found at i:87036849 original size:28 final size:28
Alignment explanation
Indices: 87036818--87036889 Score: 90
Period size: 28 Copynumber: 2.6 Consensus size: 28
87036808 TCAATACTTT
*
87036818 GCACACTAAGTGTCATTCTCAATATCTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* *
87036846 GCACATTAAGTGCCATTCTCAATATTTC
1 GCACACTAAGTGCCATTCTCAATATCTC
* * *
87036874 GTACACTGAGTACCAT
1 GCACACTAAGTGCCAT
87036890 ATTTGATTGC
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.29, C:0.26, G:0.12, T:0.32
Consensus pattern (28 bp):
GCACACTAAGTGCCATTCTCAATATCTC
Found at i:87039752 original size:39 final size:39
Alignment explanation
Indices: 87039668--87039907 Score: 288
Period size: 39 Copynumber: 6.1 Consensus size: 39
87039658 CAAATCCAAT
* * *
87039668 CACCACCAC-AAAGCATGCGGGACTTTGAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TT-AGCCCGGATATAA
* * *
87039708 TACCAGCAC-AAAGCCTGCAGGACTTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGAC-TTAGCCCGGATATAA
*
87039747 CACCAGCACGAATA-CCTTCGGGGCTTAGCCCGGATATAA
1 CACCAGCACGAA-AGCCTTCGGGACTTAGCCCGGATATAA
* *
87039786 CACCAGCACGAATGCCTTCGGGACTTAGCTCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
** * *
87039825 CACCAAAACGAATGCCTTCAGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
* *
87039864 CACCAACACGAATGCCTTCGGGACTTAGCCCGGATATAA
1 CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
87039903 CACCA
1 CACCA
87039908 TTATAAAGTC
Statistics
Matches: 180, Mismatches: 17, Indels: 7
0.88 0.08 0.03
Matches are distributed among these distances:
39 148 0.82
40 31 0.17
41 1 0.01
ACGTcount: A:0.32, C:0.30, G:0.21, T:0.17
Consensus pattern (39 bp):
CACCAGCACGAAAGCCTTCGGGACTTAGCCCGGATATAA
Found at i:87039875 original size:117 final size:119
Alignment explanation
Indices: 87039685--87039907 Score: 335
Period size: 117 Copynumber: 1.9 Consensus size: 119
87039675 ACAAAGCATG
* **
87039685 CGGGACTTTGAGCCCGGATATAATACCAGCACAAAGCCTGCAGGACTTTAGCCCGGATATAACAC
1 CGGGACTTTGAGCCCGGATATAACACCAAAACAAAGCCTGCAGGACTTTAGCCCGGATATAACAC
* *
87039750 CAGCACGAATACCTTCGGGGCTTAGCCCGGATATAACACCAGCACGAATGCCTT
66 CAACACGAATACCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
* * *
87039804 CGGGAC-TT-AGCTCGGATATAACACCAAAACGAATGCCTTCAGGAC-TTAGCCCGGATATAACA
1 CGGGACTTTGAGCCCGGATATAACACCAAAAC-AAAGCCTGCAGGACTTTAGCCCGGATATAACA
*
87039866 CCAACACGAATGCCTTCGGGACTTAGCCCGGATATAACACCA
65 CCAACACGAATACCTTCGGGACTTAGCCCGGATATAACACCA
87039908 TTATAAAGTC
Statistics
Matches: 94, Mismatches: 9, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
117 74 0.79
118 14 0.15
119 6 0.06
ACGTcount: A:0.31, C:0.29, G:0.22, T:0.18
Consensus pattern (119 bp):
CGGGACTTTGAGCCCGGATATAACACCAAAACAAAGCCTGCAGGACTTTAGCCCGGATATAACAC
CAACACGAATACCTTCGGGACTTAGCCCGGATATAACACCAGCACGAATGCCTT
Found at i:87040013 original size:28 final size:28
Alignment explanation
Indices: 87039980--87040045 Score: 96
Period size: 28 Copynumber: 2.4 Consensus size: 28
87039970 ATTTAATCAT
* *
87039980 TCAATATTTTGCACACTAAGTGTCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
* *
87040008 TCAATATCTCGCACATTAAGTGCCATTC
1 TCAATATTTCGCACACTAAGTGCCATTC
87040036 TCAATATTTC
1 TCAATATTTC
87040046 ATACACTGAG
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (28 bp):
TCAATATTTCGCACACTAAGTGCCATTC
Found at i:87040061 original size:28 final size:28
Alignment explanation
Indices: 87039991--87040061 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
87039981 CAATATTTTG
** *
87039991 CACACTAAGTGTCATTCTCAATATCTCG
1 CACACTAAGTACCATTCTCAATATCTCA
* * *
87040019 CACATTAAGTGCCATTCTCAATATTTCA
1 CACACTAAGTACCATTCTCAATATCTCA
* *
87040047 TACACTGAGTACCAT
1 CACACTAAGTACCAT
87040062 ATTTGATTGC
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.31, C:0.27, G:0.10, T:0.32
Consensus pattern (28 bp):
CACACTAAGTACCATTCTCAATATCTCA
Found at i:87042931 original size:48 final size:48
Alignment explanation
Indices: 87042877--87042979 Score: 188
Period size: 48 Copynumber: 2.1 Consensus size: 48
87042867 ACAACATTCC
87042877 AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
1 AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
* *
87042925 AAAATGCATTCCATCCTATACATGCCATAGTTCCAAAATGTAACTTAC
1 AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
87042973 AAAATGC
1 AAAATGC
87042980 CGAAGACAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 53 1.00
ACGTcount: A:0.40, C:0.23, G:0.10, T:0.27
Consensus pattern (48 bp):
AAAATGCATTCCAGCCTATACATGCCATAGTTCCAAAATGTAACTTAA
Found at i:87046317 original size:21 final size:21
Alignment explanation
Indices: 87046291--87046331 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
87046281 AACAGGAACC
*
87046291 TCGAATTTCCAGGGGACATTT
1 TCGAATTACCAGGGGACATTT
*
87046312 TCGAATTACTAGGGGACATT
1 TCGAATTACCAGGGGACATT
87046332 CCTTACACAC
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.17, G:0.24, T:0.32
Consensus pattern (21 bp):
TCGAATTACCAGGGGACATTT
Found at i:87049355 original size:19 final size:19
Alignment explanation
Indices: 87049331--87049376 Score: 67
Period size: 19 Copynumber: 2.4 Consensus size: 19
87049321 AATGCCTATT
87049331 TTTGCATT-CATTGCATGCA
1 TTTGCATTGCATTGCAT-CA
87049350 TTTGCATTGCATTGCATCA
1 TTTGCATTGCATTGCATCA
*
87049369 TATGCATT
1 TTTGCATT
87049377 AAACTTCACA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 17 0.68
20 8 0.32
ACGTcount: A:0.22, C:0.20, G:0.15, T:0.43
Consensus pattern (19 bp):
TTTGCATTGCATTGCATCA
Found at i:87050074 original size:15 final size:15
Alignment explanation
Indices: 87050050--87050079 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
87050040 CTAGTGCTCC
87050050 CTCCAAAGTTTAAAA
1 CTCCAAAGTTTAAAA
*
87050065 CTCCAGAGTTTAAAA
1 CTCCAAAGTTTAAAA
87050080 AGTATAATGG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.20, G:0.10, T:0.27
Consensus pattern (15 bp):
CTCCAAAGTTTAAAA
Found at i:87051557 original size:41 final size:41
Alignment explanation
Indices: 87051512--87051640 Score: 170
Period size: 41 Copynumber: 3.1 Consensus size: 41
87051502 GTTCATTAAG
* * * *
87051512 TGGAAAATGAATTTTTAAAATGATTTTATGGATTAG-TTATA
1 TGGAAAATGAATATATAAAATGATTATAT-GAATAGATTATA
87051553 TGGAAAATGAATATATAAAATGATTATATGAATAGATTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATAGATTATA
* * * *
87051594 TGAAAAATGAATATATAAATTGATTATTTGAATCGATTATA
1 TGGAAAATGAATATATAAAATGATTATATGAATAGATTATA
87051635 TGGAAA
1 TGGAAA
87051641 TAGAAATACA
Statistics
Matches: 78, Mismatches: 9, Indels: 2
0.88 0.10 0.02
Matches are distributed among these distances:
40 5 0.06
41 73 0.94
ACGTcount: A:0.46, C:0.01, G:0.16, T:0.38
Consensus pattern (41 bp):
TGGAAAATGAATATATAAAATGATTATATGAATAGATTATA
Found at i:87051572 original size:13 final size:13
Alignment explanation
Indices: 87051556--87051612 Score: 53
Period size: 13 Copynumber: 4.2 Consensus size: 13
87051546 AGTTATATGG
87051556 AAAATGAATATAT
1 AAAATGAATATAT
*
87051569 AAAATGATTATAT
1 AAAATGAATATAT
* *
87051582 -GAATAGATTATAT
1 AAAAT-GAATATAT
87051595 GAAAAATGAATATAT
1 --AAAATGAATATAT
87051610 AAA
1 AAA
87051613 TTGATTATTT
Statistics
Matches: 36, Mismatches: 4, Indels: 8
0.75 0.08 0.17
Matches are distributed among these distances:
12 3 0.08
13 23 0.64
15 7 0.19
16 3 0.08
ACGTcount: A:0.58, C:0.00, G:0.11, T:0.32
Consensus pattern (13 bp):
AAAATGAATATAT
Found at i:87051594 original size:28 final size:28
Alignment explanation
Indices: 87051569--87051625 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
87051559 ATGAATATAT
* *
87051569 AAAATGATTATATGAATAGATTATATGA
1 AAAATGAATATATAAATAGATTATATGA
* *
87051597 AAAATGAATATATAAATTGATTATTTGA
1 AAAATGAATATATAAATAGATTATATGA
87051625 A
1 A
87051626 TCGATTATAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.51, C:0.00, G:0.12, T:0.37
Consensus pattern (28 bp):
AAAATGAATATATAAATAGATTATATGA
Found at i:87054382 original size:34 final size:33
Alignment explanation
Indices: 87054325--87054400 Score: 82
Period size: 34 Copynumber: 2.3 Consensus size: 33
87054315 CGAGATGATG
** *
87054325 AATAAGACCATAGTTGGGCTATGGCAAATCGAAT
1 AATAAGACCATAACTAGGCTATGGCAAAT-GAAT
* **
87054359 AATAAGACCATAACTAGGTTATGGCATGTGAAT
1 AATAAGACCATAACTAGGCTATGGCAAATGAAT
87054392 -ATAAGACCA
1 AATAAGACCA
87054401 CAGTAGGGCC
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
32 9 0.25
33 4 0.11
34 23 0.64
ACGTcount: A:0.41, C:0.14, G:0.21, T:0.24
Consensus pattern (33 bp):
AATAAGACCATAACTAGGCTATGGCAAATGAAT
Found at i:87060988 original size:42 final size:43
Alignment explanation
Indices: 87060940--87061042 Score: 138
Period size: 43 Copynumber: 2.4 Consensus size: 43
87060930 GAGATTACGA
* * *
87060940 GTAAGACCATATCTGGGATA-TGGCATCGATATGAGA-CTTCTT
1 GTAAGACCATATCTGGGATATTGGCATCAATATGAGATC-CCAT
* *
87060982 GTAAGACCATAGCTGGGCTATTGGCATCAATATGAGATCCCAT
1 GTAAGACCATATCTGGGATATTGGCATCAATATGAGATCCCAT
87061025 GTAAGACCATATCTGGGA
1 GTAAGACCATATCTGGGA
87061043 CATGACACTG
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
42 18 0.35
43 33 0.63
44 1 0.02
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.27
Consensus pattern (43 bp):
GTAAGACCATATCTGGGATATTGGCATCAATATGAGATCCCAT
Found at i:87062189 original size:32 final size:32
Alignment explanation
Indices: 87062089--87062189 Score: 80
Period size: 34 Copynumber: 3.1 Consensus size: 32
87062079 CAGTTTTAGT
* * * *
87062089 TAGGGCCTTAGCCCATTTCATAATCAGAAACAG
1 TAGGGCCTAAGCCCATTACAAAATCAG-ATCAG
* * *
87062122 T-GTAGGCCTCAGCCCTTTACAGAATCAGTATCAG
1 TAG--GGCCTAAGCCCATTACAAAATCAG-ATCAG
87062156 TAGGGCCTAAGCCCATTACAAAATCA-ATGCAG
1 TAGGGCCTAAGCCCATTACAAAATCAGAT-CAG
87062188 TA
1 TA
87062190 TGCAATCAGA
Statistics
Matches: 55, Mismatches: 9, Indels: 9
0.75 0.12 0.12
Matches are distributed among these distances:
31 2 0.04
32 6 0.11
33 21 0.38
34 25 0.45
35 1 0.02
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.24
Consensus pattern (32 bp):
TAGGGCCTAAGCCCATTACAAAATCAGATCAG
Found at i:87063791 original size:28 final size:27
Alignment explanation
Indices: 87063748--87063834 Score: 113
Period size: 27 Copynumber: 3.2 Consensus size: 27
87063738 GGAGGAAGCG
*
87063748 TTCTGGTGGCTATGCCACAAATATCTGT
1 TTCTGGTGGCTCTGCCAC-AATATCTGT
87063776 TTCTGGTGGCTCTGCCACAATATCTGT
1 TTCTGGTGGCTCTGCCACAATATCTGT
* * * *
87063803 ATCTAGTGACTCTGTCACAATATCTG-
1 TTCTGGTGGCTCTGCCACAATATCTGT
87063829 TTCTGG
1 TTCTGG
87063835 CAACCATGCT
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
26 4 0.08
27 31 0.60
28 17 0.33
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.37
Consensus pattern (27 bp):
TTCTGGTGGCTCTGCCACAATATCTGT
Found at i:87063963 original size:6 final size:6
Alignment explanation
Indices: 87063954--87064069 Score: 85
Period size: 6 Copynumber: 18.8 Consensus size: 6
87063944 TTGCATTCAC
* * *
87063954 ATTCTG ATTCTG ATTCT- ATTACCTG ATACTG ATTCTG ATTCTG -TCACCTA
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG AT--TCTG
** *
87064004 ATTCTG ATTCTG ATTCTG ATTCCA ATTCTG -TCACCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
87064053 ATTCTC ATTTTG ATTCT
1 ATTCTG ATTCTG ATTCT
87064070 AGTTCTAGTA
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
5 5 0.06
6 69 0.81
7 7 0.08
8 4 0.05
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.47
Consensus pattern (6 bp):
ATTCTG
Found at i:87063989 original size:31 final size:31
Alignment explanation
Indices: 87063954--87064057 Score: 106
Period size: 31 Copynumber: 3.4 Consensus size: 31
87063944 TTGCATTCAC
*
87063954 ATTCTGATTCTGATTCTATTACCTGATACTG
1 ATTCTGATTCTGATTCTATTACCTGATTCTG
*
87063985 ATTCTGATTCTG-TCACCTAATT--CTGATTCTG
1 ATTCTGATTCTGAT--TCT-ATTACCTGATTCTG
** * *
87064016 ATTCTGATTCCAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTATTACCTGATTCTG
87064047 ATTCTGATTCT
1 ATTCTGATTCT
87064058 CATTTTGATT
Statistics
Matches: 59, Mismatches: 8, Indels: 12
0.75 0.10 0.15
Matches are distributed among these distances:
29 1 0.02
30 3 0.05
31 49 0.83
32 3 0.05
33 3 0.05
ACGTcount: A:0.20, C:0.22, G:0.12, T:0.45
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTATTACCTGATTCTG
Found at i:87064017 original size:37 final size:37
Alignment explanation
Indices: 87063976--87064069 Score: 134
Period size: 37 Copynumber: 2.5 Consensus size: 37
87063966 ATTCTATTAC
*
87063976 CTGATACTGATTCTGATTCTGTCACCTAATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
** *
87064013 CTGATTCTGATTCCAATTCTGTCACCTGATTCTGATT
1 CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
* *
87064050 CTGATTCTCATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
87064070 AGTTCTAGTA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
37 49 1.00
ACGTcount: A:0.19, C:0.22, G:0.13, T:0.46
Consensus pattern (37 bp):
CTGATTCTGATTCTGATTCTGTCACCTAATTCTGATT
Found at i:87064021 original size:25 final size:25
Alignment explanation
Indices: 87063954--87064021 Score: 100
Period size: 25 Copynumber: 2.7 Consensus size: 25
87063944 TTGCATTCAC
* * *
87063954 ATTCTGATTCTGATTCTATTACCTG
1 ATTCTGATTCTGATTCTGTCACCTA
*
87063979 ATACTGATTCTGATTCTGTCACCTA
1 ATTCTGATTCTGATTCTGTCACCTA
87064004 ATTCTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTG
87064022 ATTCCAATTC
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.21, C:0.21, G:0.13, T:0.46
Consensus pattern (25 bp):
ATTCTGATTCTGATTCTGTCACCTA
Found at i:87070355 original size:40 final size:41
Alignment explanation
Indices: 87070259--87070363 Score: 126
Period size: 40 Copynumber: 2.6 Consensus size: 41
87070249 TGAACGATGT
*
87070259 CCGGGCTATGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTATGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
* * * * *
87070299 CCGGACTAAGAT-CCGAAGGCATTTGTGC-GAGTTACTATAA
1 CCGGGCTATG-TCCCGAAGGCATTTGTGCTAAGTGACCATAA
87070339 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTATGTCCCGAAGGCATTTG
87070364 AACGAGTAGC
Statistics
Matches: 54, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.02
40 45 0.83
41 8 0.15
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.26
Consensus pattern (41 bp):
CCGGGCTATGTCCCGAAGGCATTTGTGCTAAGTGACCATAA
Found at i:87070922 original size:72 final size:72
Alignment explanation
Indices: 87070842--87070983 Score: 257
Period size: 72 Copynumber: 2.0 Consensus size: 72
87070832 TTCGAAATGG
* *
87070842 CATGTATAGGACTACCCTTTTTGTTGTGGGTTATGGACCCTTTGGACTTGTATAATTTTGGATAG
1 CATGTATAGGACTACCCTTTTTGTAGTGGGTCATGGACCCTTTGGACTTGTATAATTTTGGATAG
87070907 CCATGCA
66 CCATGCA
*
87070914 CATGTATAGGACTACCCTTTTTGTAGTGGGTCATGGACCCTTTGGATTTGTATAATTTTGGATAG
1 CATGTATAGGACTACCCTTTTTGTAGTGGGTCATGGACCCTTTGGACTTGTATAATTTTGGATAG
87070979 CCATG
66 CCATG
87070984 TGAAAATGGC
Statistics
Matches: 67, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
72 67 1.00
ACGTcount: A:0.21, C:0.16, G:0.24, T:0.39
Consensus pattern (72 bp):
CATGTATAGGACTACCCTTTTTGTAGTGGGTCATGGACCCTTTGGACTTGTATAATTTTGGATAG
CCATGCA
Found at i:87077068 original size:59 final size:58
Alignment explanation
Indices: 87076976--87077093 Score: 227
Period size: 59 Copynumber: 2.0 Consensus size: 58
87076966 ATAAGGAGTA
87076976 TGGGCATAAAATAATGAAAGGGAATATGATGAAAACAAAAAAAAAAGTGTGTGGTTGTT
1 TGGGCATAAAATAATGAAAGGGAATATGATGAAAAC-AAAAAAAAAGTGTGTGGTTGTT
87077035 TGGGCATAAAATAATGAAAGGGAATATGATGAAAACAAAAAAAAAGTGTGTGGTTGTT
1 TGGGCATAAAATAATGAAAGGGAATATGATGAAAACAAAAAAAAAGTGTGTGGTTGTT
87077093 T
1 T
87077094 CCCCCCCCCA
Statistics
Matches: 59, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
58 23 0.39
59 36 0.61
ACGTcount: A:0.47, C:0.03, G:0.25, T:0.25
Consensus pattern (58 bp):
TGGGCATAAAATAATGAAAGGGAATATGATGAAAACAAAAAAAAAGTGTGTGGTTGTT
Found at i:87078410 original size:40 final size:40
Alignment explanation
Indices: 87078258--87078403 Score: 172
Period size: 40 Copynumber: 3.6 Consensus size: 40
87078248 TTGAACGATG
* * * *
87078258 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
87078298 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
87078338 TCTGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
87078379 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
87078404 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
39 1 0.01
40 80 0.88
41 10 0.11
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:87082426 original size:21 final size:20
Alignment explanation
Indices: 87082391--87082433 Score: 59
Period size: 21 Copynumber: 2.1 Consensus size: 20
87082381 ATACATGAGT
*
87082391 ATTATGATGTTTGATGATAG
1 ATTATGATATTTGATGATAG
*
87082411 ATTATGAATATTTGATGTTAG
1 ATTATG-ATATTTGATGATAG
87082432 AT
1 AT
87082434 AAACAAGTTT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 6 0.30
21 14 0.70
ACGTcount: A:0.33, C:0.00, G:0.21, T:0.47
Consensus pattern (20 bp):
ATTATGATATTTGATGATAG
Found at i:87089674 original size:261 final size:261
Alignment explanation
Indices: 87089210--87089730 Score: 988
Period size: 261 Copynumber: 2.0 Consensus size: 261
87089200 CCGAATTAGG
87089210 GCCTAATCAGAATAGTGGTTTCGTGACCATAAATCTGAGATAGAAATAATAATTTTATAATTATT
1 GCCTAATCAGAATAGTGGTTTCGTGACCATAAATCTGAGATAGAAATAATAATTTTATAATTATT
87089275 TTGAGGTCTATGATATGATTGCATAATTGTGTGAAAAGTTCGTGAAGAAATTCTATGCATAAAGT
66 TTGAGGTCTATGATATGATTGCATAATTGTGTGAAAAGTTCGTGAAGAAATTCTATGCATAAAGT
87089340 GCTTAATTTGAAGTTAGGGACTAAATTAAATAAGTTGCAAAACTTGCATTCTAGAAGTTTCTAGT
131 GCTTAATTTGAAGTTAGGGACTAAATTAAATAAGTTGCAAAACTTGCATTCTAGAAGTTTCTAGT
87089405 ATGAAATTACTTTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTAAAAGTTTA
196 ATGAAATTACTTTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTAAAAGTTTA
87089470 T
261 T
* *
87089471 GCCTAATCAGAATAGTGGTTTCGTGACCATAAATTTGAGATAGAAATAATTATTTTATAATTATT
1 GCCTAATCAGAATAGTGGTTTCGTGACCATAAATCTGAGATAGAAATAATAATTTTATAATTATT
* * *
87089536 TTGAGGTCTATGATATGATTGCATGATTGTGTGAAAATTTCGTGAGGAAATTCTATGCATAAAGT
66 TTGAGGTCTATGATATGATTGCATAATTGTGTGAAAAGTTCGTGAAGAAATTCTATGCATAAAGT
87089601 GCTTAATTTGAAGTTAGGGACTAAATTAAATAAGTTGCAAAACTTGCATTCTAGAAGTTTCTAGT
131 GCTTAATTTGAAGTTAGGGACTAAATTAAATAAGTTGCAAAACTTGCATTCTAGAAGTTTCTAGT
*
87089666 ATGAAATTACTTTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTCAAAGTTTA
196 ATGAAATTACTTTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTAAAAGTTTA
87089731 CGGACAAAAA
Statistics
Matches: 254, Mismatches: 6, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
261 254 1.00
ACGTcount: A:0.37, C:0.09, G:0.18, T:0.36
Consensus pattern (261 bp):
GCCTAATCAGAATAGTGGTTTCGTGACCATAAATCTGAGATAGAAATAATAATTTTATAATTATT
TTGAGGTCTATGATATGATTGCATAATTGTGTGAAAAGTTCGTGAAGAAATTCTATGCATAAAGT
GCTTAATTTGAAGTTAGGGACTAAATTAAATAAGTTGCAAAACTTGCATTCTAGAAGTTTCTAGT
ATGAAATTACTTTGAAATATTAATTAGGAGGTCTTAAATAGAAATTTGACCAATTTAAAAGTTTA
T
Found at i:87091104 original size:50 final size:49
Alignment explanation
Indices: 87090983--87091171 Score: 202
Period size: 50 Copynumber: 3.8 Consensus size: 49
87090973 TGAGGTCGCA
* * * *
87090983 TGTGTAGTACTAAGTGCAGGCTACTATG-CGTACCCGAAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTC-TACCAGATAA-T-TGGTCACG
* * **
87091034 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATAATT-GGTCACG
* * *
87091084 TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATAATTGGTCACG
* *
87091133 TGTGTAGTACTATGTGCAGGCTACTATG-CGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTC-TACCAGATA
87091172 GCTTTGGCTA
Statistics
Matches: 117, Mismatches: 18, Indels: 8
0.82 0.13 0.06
Matches are distributed among these distances:
48 1 0.01
49 40 0.34
50 44 0.38
51 32 0.27
ACGTcount: A:0.25, C:0.19, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTCTACCAGATAATTGGTCACG
Found at i:87094197 original size:15 final size:15
Alignment explanation
Indices: 87094177--87094207 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
87094167 CTTGGGTTTC
87094177 TTTATTCTGGATTTT
1 TTTATTCTGGATTTT
*
87094192 TTTATTCTGGGTTTT
1 TTTATTCTGGATTTT
87094207 T
1 T
87094208 CTATCTTAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.10, C:0.06, G:0.16, T:0.68
Consensus pattern (15 bp):
TTTATTCTGGATTTT
Found at i:87096497 original size:50 final size:49
Alignment explanation
Indices: 87096369--87096564 Score: 221
Period size: 50 Copynumber: 3.9 Consensus size: 49
87096359 TCTATTGTGA
* * * *
87096369 GGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-T
* * * **
87096420 GATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
87096469 AGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTCTACCGGATAATT
1 -GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * *
87096519 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
87096565 GCTTTGGCTA
Statistics
Matches: 122, Mismatches: 22, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
49 40 0.33
50 44 0.36
51 38 0.31
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (49 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:87098925 original size:23 final size:24
Alignment explanation
Indices: 87098850--87098968 Score: 154
Period size: 24 Copynumber: 5.0 Consensus size: 24
87098840 GCTTTATCAT
* *
87098850 ATAACTGGAGGCCT-AGCCTCTTTTT
1 ATAACTGG-GGCATAAGCC-CTTTTA
*
87098875 GTAACTGGGGCA-AAGCCCTTTTTA
1 ATAACTGGGGCATAAGCCC-TTTTA
87098899 ATAACTGGGGCATAAGCCC-TTTA
1 ATAACTGGGGCATAAGCCCTTTTA
*
87098922 ATAACTGGGGCATAAGCCCTTTTG
1 ATAACTGGGGCATAAGCCCTTTTA
87098946 ATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGGGCATAAGCCCTTTT
87098969 GCACTTCCTC
Statistics
Matches: 85, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
23 24 0.28
24 48 0.56
25 13 0.15
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (24 bp):
ATAACTGGGGCATAAGCCCTTTTA
Found at i:87098930 original size:47 final size:47
Alignment explanation
Indices: 87098876--87098967 Score: 159
Period size: 47 Copynumber: 2.0 Consensus size: 47
87098866 CCTCTTTTTG
87098876 TAACTGGGGCA-AAGCCCTTTTTAATAACTGGGGCATAAGCCCTTTAA
1 TAACTGGGGCATAAGCCC-TTTTAATAACTGGGGCATAAGCCCTTTAA
*
87098923 TAACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTT
1 TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTT
87098968 TGCACTTCCT
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
47 37 0.86
48 6 0.14
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.28
Consensus pattern (47 bp):
TAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTTTAA
Found at i:87099040 original size:9 final size:9
Alignment explanation
Indices: 87099026--87099082 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
87099016 ATCTCATGTG
87099026 CATATCATA
1 CATATCATA
*
87099035 CATATCATGTG
1 CATATCA--TA
87099046 CATATCATA
1 CATATCATA
* *
87099055 CATGTCATGTG
1 CATATCA--TA
87099066 CATATCATA
1 CATATCATA
87099075 CATATCAT
1 CATATCAT
87099083 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:87099042 original size:20 final size:20
Alignment explanation
Indices: 87099014--87099084 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
87099004 GCATTTATGA
*
87099014 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
87099034 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
87099054 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
87099074 ACATATCATGT
1 ACATATCATGT
87099085 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:87099049 original size:11 final size:11
Alignment explanation
Indices: 87099019--87099073 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
87099009 TATGAACATC
87099019 TCATGTGCATA
1 TCATGTGCATA
*
87099030 TCA--TACATA
1 TCATGTGCATA
87099039 TCATGTGCATA
1 TCATGTGCATA
* *
87099050 TCA--TACATG
1 TCATGTGCATA
87099059 TCATGTGCATA
1 TCATGTGCATA
87099070 TCAT
1 TCAT
87099074 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:87108283 original size:40 final size:40
Alignment explanation
Indices: 87108251--87108478 Score: 316
Period size: 40 Copynumber: 5.7 Consensus size: 40
87108241 CCATCATGAT
* ** * *
87108251 TGCTCTTCGGGACCTAGCCCGGATGTAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
* * * *
87108291 TGCTCTTCGAGG-TTTAGCACGGATATATTACTAGCACGAA
1 TGCTCTTCG-GGACTTAGCCCGGATACATCACTAGCACGAA
* *
87108331 TGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
87108371 TGCTCTTCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
*
87108411 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
87108451 TGCTCTTCGGGACTTAGCCCGGAT-CATC
1 TGCTCTTCGGGACTTAGCCCGGATACATC
87108479 GTCGAGACCT
Statistics
Matches: 168, Mismatches: 18, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
39 5 0.03
40 161 0.96
41 2 0.01
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
Found at i:87111267 original size:49 final size:47
Alignment explanation
Indices: 87110999--87111351 Score: 589
Period size: 47 Copynumber: 7.4 Consensus size: 47
87110989 CCCTTCGGGA
* * * *
87110999 CTTATCACATTTATACACTTTCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87111046 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87111093 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87111140 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87111187 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
87111234 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
87111283 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
87111332 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
87111352 GTACATCAAT
Statistics
Matches: 295, Mismatches: 9, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 203 0.69
49 92 0.31
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:87118421 original size:23 final size:23
Alignment explanation
Indices: 87118397--87119252 Score: 1660
Period size: 23 Copynumber: 37.1 Consensus size: 23
87118387 CCTAGCCTCT
*
87118397 TTTAGTAACTGGGGCA-AAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118419 TTTTTAATAACTGGGGCATAAGCCC
1 --TTTAATAACTGGGGCATAAGCCC
87118444 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118467 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118490 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118513 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118536 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118559 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118582 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118605 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118628 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118651 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118674 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118697 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118720 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118743 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118766 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118789 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118812 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118835 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118858 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118881 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118904 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118927 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118950 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118973 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87118996 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119019 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119042 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119065 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119088 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119111 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119134 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119157 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119180 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
87119203 TTTAATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCC
*
87119226 TTTTGATAACTGGGGCATAAGCCC
1 -TTTAATAACTGGGGCATAAGCCC
87119250 TTT
1 TTT
87119253 TGCACTTCCT
Statistics
Matches: 828, Mismatches: 2, Indels: 5
0.99 0.00 0.01
Matches are distributed among these distances:
23 785 0.95
24 37 0.04
25 6 0.01
ACGTcount: A:0.30, C:0.22, G:0.22, T:0.27
Consensus pattern (23 bp):
TTTAATAACTGGGGCATAAGCCC
Found at i:87119325 original size:9 final size:9
Alignment explanation
Indices: 87119311--87119367 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
87119301 ATCTCATGTG
87119311 CATATCATA
1 CATATCATA
*
87119320 CATATCATGTG
1 CATATCA--TA
87119331 CATATCATA
1 CATATCATA
* *
87119340 CATGTCATGTG
1 CATATCA--TA
87119351 CATATCATA
1 CATATCATA
87119360 CATATCAT
1 CATATCAT
87119368 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:87119327 original size:20 final size:20
Alignment explanation
Indices: 87119299--87119369 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
87119289 GCATTTATGA
*
87119299 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
87119319 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
87119339 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
87119359 ACATATCATGT
1 ACATATCATGT
87119370 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:87119334 original size:11 final size:11
Alignment explanation
Indices: 87119304--87119358 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
87119294 TATGAACATC
87119304 TCATGTGCATA
1 TCATGTGCATA
*
87119315 TCA--TACATA
1 TCATGTGCATA
87119324 TCATGTGCATA
1 TCATGTGCATA
* *
87119335 TCA--TACATG
1 TCATGTGCATA
87119344 TCATGTGCATA
1 TCATGTGCATA
87119355 TCAT
1 TCAT
87119359 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:87120430 original size:31 final size:29
Alignment explanation
Indices: 87120351--87120430 Score: 88
Period size: 29 Copynumber: 2.7 Consensus size: 29
87120341 AAATTGTATC
*
87120351 AAATCAAAATTTCATGTATAAAATTGCACA
1 AAATC-AAAGTTCATGTATAAAATTGCACA
* * *
87120381 AAATCAAAGTTTACGTATATAATTGCACA
1 AAATCAAAGTTCATGTATAAAATTGCACA
*
87120410 TTAAATCATAGTTCATGTATA
1 --AAATCAAAGTTCATGTATA
87120431 GTTTTGGGAT
Statistics
Matches: 41, Mismatches: 7, Indels: 3
0.80 0.14 0.06
Matches are distributed among these distances:
29 20 0.49
30 5 0.12
31 16 0.39
ACGTcount: A:0.45, C:0.12, G:0.09, T:0.34
Consensus pattern (29 bp):
AAATCAAAGTTCATGTATAAAATTGCACA
Found at i:87121082 original size:70 final size:67
Alignment explanation
Indices: 87120962--87121094 Score: 176
Period size: 70 Copynumber: 1.9 Consensus size: 67
87120952 ATAAACAATA
* *
87120962 TAATGATTTTGCCTTTTAACTTAATAAGTAAACATTTATCAAAACAACGTAGATTTGCCTTTTAA
1 TAATGATTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACGTAGATTTGCCTTTTAA
87121027 CT
66 CT
* ** * *
87121029 TAATGGTTTTGACTTTTAACTTTAGAAAAGGTAAACATTTATCAAAATGACGTAGTTTTTCCTTT
1 TAATGATTTTGACTTTTAAC-TTA-AAAA-GTAAACATTTATCAAAACAACGTAGATTTGCCTTT
87121094 T
63 T
87121095 CTTATTCAAA
Statistics
Matches: 56, Mismatches: 7, Indels: 3
0.85 0.11 0.05
Matches are distributed among these distances:
67 18 0.32
68 3 0.05
69 3 0.05
70 32 0.57
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (67 bp):
TAATGATTTTGACTTTTAACTTAAAAAGTAAACATTTATCAAAACAACGTAGATTTGCCTTTTAA
CT
Found at i:87122474 original size:18 final size:17
Alignment explanation
Indices: 87122447--87122493 Score: 76
Period size: 18 Copynumber: 2.6 Consensus size: 17
87122437 CGATGACCGG
87122447 CCCCTTGGCCGAATTTT
1 CCCCTTGGCCGAATTTT
87122464 CCCCGTTGGCCGAATTTT
1 CCCC-TTGGCCGAATTTT
87122482 CCCCCTTGGCCG
1 -CCCCTTGGCCG
87122494 GAGCTCCTTT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
17 4 0.14
18 20 0.71
19 4 0.14
ACGTcount: A:0.09, C:0.40, G:0.21, T:0.30
Consensus pattern (17 bp):
CCCCTTGGCCGAATTTT
Found at i:87123264 original size:21 final size:19
Alignment explanation
Indices: 87123228--87123276 Score: 73
Period size: 19 Copynumber: 2.5 Consensus size: 19
87123218 TCTTCTGTAC
87123228 TATTATATATATTTTCTAA
1 TATTATATATATTTTCTAA
87123247 TATTACTATATATATTTCTAA
1 TATTA-TATATAT-TTTCTAA
87123268 TA-TATATAT
1 TATTATATAT
87123277 TAAAAAATAT
Statistics
Matches: 28, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
19 10 0.36
20 9 0.32
21 9 0.32
ACGTcount: A:0.39, C:0.06, G:0.00, T:0.55
Consensus pattern (19 bp):
TATTATATATATTTTCTAA
Found at i:87127269 original size:44 final size:44
Alignment explanation
Indices: 87127206--87127295 Score: 135
Period size: 44 Copynumber: 2.0 Consensus size: 44
87127196 AAATTGTACT
* * * * *
87127206 TTAAATTCTAATTATTTTTAAATGTGTAGTTATCACAACTTCTA
1 TTAAATTATAAATATTTTTAAACGTATAATTATCACAACTTCTA
87127250 TTAAATTATAAATATTTTTAAACGTATAATTATCACAACTTCTA
1 TTAAATTATAAATATTTTTAAACGTATAATTATCACAACTTCTA
87127294 TT
1 TT
87127296 TTATTTTAAT
Statistics
Matches: 41, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
44 41 1.00
ACGTcount: A:0.38, C:0.11, G:0.04, T:0.47
Consensus pattern (44 bp):
TTAAATTATAAATATTTTTAAACGTATAATTATCACAACTTCTA
Found at i:87129502 original size:32 final size:32
Alignment explanation
Indices: 87129466--87129530 Score: 130
Period size: 32 Copynumber: 2.0 Consensus size: 32
87129456 TGTATGCATT
87129466 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
87129498 TTAGCATTTTAATAGTTAATGGATGATGGGCA
1 TTAGCATTTTAATAGTTAATGGATGATGGGCA
87129530 T
1 T
87129531 GGTAAGCATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.31, C:0.06, G:0.25, T:0.38
Consensus pattern (32 bp):
TTAGCATTTTAATAGTTAATGGATGATGGGCA
Found at i:87131040 original size:26 final size:26
Alignment explanation
Indices: 87131011--87131063 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
87131001 TTTACAGTTT
87131011 TACCCCTAGGAGATAAATT-ACCGAAA
1 TACCCCTAGG-GATAAATTGACCGAAA
* *
87131037 TACCCCTAGGGTTAAATTGACCTAAA
1 TACCCCTAGGGATAAATTGACCGAAA
87131063 T
1 T
87131064 GCATGTTTGA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
25 7 0.29
26 17 0.71
ACGTcount: A:0.38, C:0.23, G:0.15, T:0.25
Consensus pattern (26 bp):
TACCCCTAGGGATAAATTGACCGAAA
Found at i:87150162 original size:8 final size:8
Alignment explanation
Indices: 87150158--87150262 Score: 70
Period size: 8 Copynumber: 12.5 Consensus size: 8
87150148 AACTTTTTTA
*
87150158 TTTTTATT
1 TTTTTCTT
*
87150166 TTTTAACTT
1 TTTT-TCTT
87150175 TTTTTCTCT
1 TTTTTCT-T
*
87150184 CTTTTCTT
1 TTTTTCTT
87150192 TTTTTCTT
1 TTTTTCTT
87150200 TTTTTCTTT
1 TTTTTC-TT
*
87150209 TTTTTCGAAT
1 TTTTTC--TT
*
87150219 TATTTCTT
1 TTTTTCTT
87150227 CTTTTT-TT
1 -TTTTTCTT
87150235 TGTTTT-TT
1 T-TTTTCTT
*
87150243 TTTTGCTT
1 TTTTTCTT
*
87150251 TTTTTGTT
1 TTTTTCTT
87150259 TTTT
1 TTTT
87150263 GTTTTGCTTT
Statistics
Matches: 77, Mismatches: 13, Indels: 14
0.74 0.12 0.13
Matches are distributed among these distances:
7 4 0.05
8 42 0.55
9 25 0.32
10 6 0.08
ACGTcount: A:0.06, C:0.10, G:0.04, T:0.80
Consensus pattern (8 bp):
TTTTTCTT
Found at i:87150207 original size:21 final size:20
Alignment explanation
Indices: 87150172--87150297 Score: 85
Period size: 21 Copynumber: 6.0 Consensus size: 20
87150162 TATTTTTTAA
* *
87150172 CTTTTTTTCTCTCTTTTCTTT
1 CTTTTTTTTTTTCTTTT-TTT
87150193 -TTTTCTTTTTTTCTTTTTTTT
1 CTTTT-TTTTTTTC-TTTTTTT
** * *
87150214 CGAATTATTTCTTCTTTTTTT
1 C-TTTTTTTTTTTCTTTTTTT
87150235 -TGTTTTTTTTTTGCTTTTTTT
1 CT-TTTTTTTTTT-CTTTTTTT
* *
87150256 GTTTTTTGTTTTGCTTTTTTGT
1 CTTTTTT-TTTTTCTTTTTT-T
*
87150278 CTTTTTTTTTGTCTTTTTTT
1 CTTTTTTTTTTTCTTTTTTT
87150298 TGTGGAACAT
Statistics
Matches: 82, Mismatches: 14, Indels: 19
0.71 0.12 0.17
Matches are distributed among these distances:
20 12 0.15
21 46 0.56
22 22 0.27
23 2 0.02
ACGTcount: A:0.02, C:0.11, G:0.06, T:0.80
Consensus pattern (20 bp):
CTTTTTTTTTTTCTTTTTTT
Found at i:87150245 original size:12 final size:12
Alignment explanation
Indices: 87150228--87150298 Score: 70
Period size: 12 Copynumber: 5.6 Consensus size: 12
87150218 TTATTTCTTC
87150228 TTTTTTTTGTTT
1 TTTTTTTTGTTT
*
87150240 TTTTTTTGCTTTTT
1 TTTTTTT--TGTTT
87150254 TTGTTTTTTGTTT
1 TT-TTTTTTGTTT
* *
87150267 TGCTTTTTTGTCT
1 T-TTTTTTTGTTT
*
87150280 TTTTTTTTGTCT
1 TTTTTTTTGTTT
87150292 TTTTTTT
1 TTTTTTT
87150299 GTGGAACATG
Statistics
Matches: 50, Mismatches: 5, Indels: 8
0.79 0.08 0.13
Matches are distributed among these distances:
12 24 0.48
13 15 0.30
14 6 0.12
15 5 0.10
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.85
Consensus pattern (12 bp):
TTTTTTTTGTTT
Found at i:87150262 original size:16 final size:14
Alignment explanation
Indices: 87150228--87150298 Score: 56
Period size: 13 Copynumber: 5.2 Consensus size: 14
87150218 TTATTTCTTC
87150228 TTTTTTTTGTTTTT
1 TTTTTTTTGTTTTT
**
87150242 TTTTTGCT-TTTTT
1 TTTTTTTTGTTTTT
*
87150255 TGTTTTTTG-TTTT
1 TTTTTTTTGTTTTT
** *
87150268 GCTTTTTTGTCTTT
1 TTTTTTTTGTTTTT
* *
87150282 TTTTTTGTCTTTTT
1 TTTTTTTTGTTTTT
87150296 TTT
1 TTT
87150299 GTGGAACATG
Statistics
Matches: 42, Mismatches: 13, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
13 21 0.50
14 21 0.50
ACGTcount: A:0.00, C:0.06, G:0.10, T:0.85
Consensus pattern (14 bp):
TTTTTTTTGTTTTT
Found at i:87157366 original size:35 final size:35
Alignment explanation
Indices: 87157327--87157397 Score: 124
Period size: 35 Copynumber: 2.0 Consensus size: 35
87157317 CGTCGTGCCC
*
87157327 AGCGTTGTGCCCACGACTCCAGCCGCGACAGAATA
1 AGCGTCGTGCCCACGACTCCAGCCGCGACAGAATA
*
87157362 AGCGTCGTGCCCACGACTCCAGCCGTGACAGAATA
1 AGCGTCGTGCCCACGACTCCAGCCGCGACAGAATA
87157397 A
1 A
87157398 AAAGAAAAAA
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 34 1.00
ACGTcount: A:0.27, C:0.34, G:0.25, T:0.14
Consensus pattern (35 bp):
AGCGTCGTGCCCACGACTCCAGCCGCGACAGAATA
Found at i:87168266 original size:13 final size:12
Alignment explanation
Indices: 87168248--87168284 Score: 56
Period size: 13 Copynumber: 2.9 Consensus size: 12
87168238 ATCGTGTTCT
87168248 TTAGTTAATTTAA
1 TTAGTTAATTT-A
87168261 TTAGTTAATTTA
1 TTAGTTAATTTA
87168273 TTAAGTTAATTT
1 TT-AGTTAATTT
87168285 TAGTTTTTAA
Statistics
Matches: 23, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
12 3 0.13
13 20 0.87
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (12 bp):
TTAGTTAATTTA
Found at i:87168817 original size:28 final size:28
Alignment explanation
Indices: 87168768--87168824 Score: 78
Period size: 28 Copynumber: 2.0 Consensus size: 28
87168758 ATTATCAACT
87168768 CCATAAGTTATAAAACTCTTCCTATACC
1 CCATAAGTTATAAAACTCTTCCTATACC
* * * *
87168796 CCATAAGTTATGAGATTTTTCCTATACC
1 CCATAAGTTATAAAACTCTTCCTATACC
87168824 C
1 C
87168825 TATTAATATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.32, C:0.26, G:0.07, T:0.35
Consensus pattern (28 bp):
CCATAAGTTATAAAACTCTTCCTATACC
Found at i:87169005 original size:22 final size:22
Alignment explanation
Indices: 87168977--87169020 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
87168967 ATTCTCTCTA
87168977 CACTCTTTATTCTATAACATTT
1 CACTCTTTATTCTATAACATTT
* *
87168999 CACTCTTTCTTCTATCACATTT
1 CACTCTTTATTCTATAACATTT
87169021 TAGTTTATTC
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.23, C:0.27, G:0.00, T:0.50
Consensus pattern (22 bp):
CACTCTTTATTCTATAACATTT
Found at i:87174729 original size:6 final size:6
Alignment explanation
Indices: 87174699--87174779 Score: 76
Period size: 6 Copynumber: 13.3 Consensus size: 6
87174689 AAAAAACATT
* *
87174699 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATCAGA ATCAG-
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA
* * *
87174746 GTGACAGA ATCAGA ATCAGG ATCAGA ATTAGA AT
1 AT--CAGA ATCAGA ATCAGA ATCAGA ATCAGA AT
87174780 TAGGTGACAG
Statistics
Matches: 61, Mismatches: 9, Indels: 10
0.76 0.11 0.12
Matches are distributed among these distances:
5 2 0.03
6 54 0.89
7 4 0.07
8 1 0.02
ACGTcount: A:0.48, C:0.14, G:0.20, T:0.19
Consensus pattern (6 bp):
ATCAGA
Found at i:87174755 original size:19 final size:19
Alignment explanation
Indices: 87174731--87174801 Score: 83
Period size: 19 Copynumber: 3.8 Consensus size: 19
87174721 GAATCAGAAT
87174731 CAGAATCAGAATCAGGTGA
1 CAGAATCAGAATCAGGTGA
87174750 CAGAATCAGAATCA-G-GA
1 CAGAATCAGAATCAGGTGA
* *
87174767 TCAGAATTAGAATTAGGTGA
1 -CAGAATCAGAATCAGGTGA
* *
87174787 CAGGATTAGAATCAG
1 CAGAATCAGAATCAG
87174802 AATGTGAATC
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
17 2 0.04
18 13 0.29
19 28 0.62
20 2 0.04
ACGTcount: A:0.42, C:0.13, G:0.25, T:0.20
Consensus pattern (19 bp):
CAGAATCAGAATCAGGTGA
Found at i:87174763 original size:37 final size:37
Alignment explanation
Indices: 87174720--87174804 Score: 125
Period size: 37 Copynumber: 2.3 Consensus size: 37
87174710 AATCAAAATG
87174720 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
* * * * *
87174757 AGAATCAGGATCAGAATTAGAATTAGGTGACAGGATT
1 AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
87174794 AGAATCAGAAT
1 AGAATCAGAAT
87174805 GTGAATCCAA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 42 1.00
ACGTcount: A:0.45, C:0.12, G:0.24, T:0.20
Consensus pattern (37 bp):
AGAATCAGAATCAGAATCAGAATCAGGTGACAGAATC
Found at i:87175448 original size:27 final size:27
Alignment explanation
Indices: 87175401--87175507 Score: 146
Period size: 27 Copynumber: 4.0 Consensus size: 27
87175391 ATTGGTCAAT
* * *
87175401 AGATA-TTGTGACAAAGTCACCAGATAC
1 AGATATTTGTGGCATAGCCACCAGA-AC
*
87175428 AGATA-TTGTGGCAGAGCCACCAGAAC
1 AGATATTTGTGGCATAGCCACCAGAAC
87175454 AGATATTTGTGGCATAGCCACCAGAAAC
1 AGATATTTGTGGCATAGCCACCAG-AAC
87175482 AGATATTTGTGGCATAGCCACCAGAA
1 AGATATTTGTGGCATAGCCACCAGAA
87175508 TGCTTCCTCC
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
26 7 0.09
27 40 0.54
28 27 0.36
ACGTcount: A:0.36, C:0.21, G:0.22, T:0.21
Consensus pattern (27 bp):
AGATATTTGTGGCATAGCCACCAGAAC
Found at i:87175791 original size:54 final size:54
Alignment explanation
Indices: 87175733--87175848 Score: 126
Period size: 54 Copynumber: 2.1 Consensus size: 54
87175723 GGGCAAAATG
* * *
87175733 GTAATTTTACCCCACAAGGGTATCTCGA-AAATTTTACCCTACAGGAGTATTTTA
1 GTAATTCTACCCCACAAGGGTAT-TCGAGAAATTCTACCCTACAGGAGTATTTCA
* * * ** * *
87175787 GTAATTCTATCCTACAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCCACAAGGGTATTCGAGAAATTCTACCCTACAGGAGTATTTCA
87175841 GTAATTCT
1 GTAATTCT
87175849 GTAAATCGAG
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.04
54 49 0.96
ACGTcount: A:0.28, C:0.19, G:0.16, T:0.36
Consensus pattern (54 bp):
GTAATTCTACCCCACAAGGGTATTCGAGAAATTCTACCCTACAGGAGTATTTCA
Found at i:87175792 original size:27 final size:27
Alignment explanation
Indices: 87175762--87175848 Score: 138
Period size: 27 Copynumber: 3.2 Consensus size: 27
87175752 GTATCTCGAA
* *
87175762 AATTTTACCCTACAGGAGTATTTTAGT
1 AATTCTACCCTACAGGGGTATTTTAGT
*
87175789 AATTCTATCCTACAGGGGTATTTTAGT
1 AATTCTACCCTACAGGGGTATTTTAGT
*
87175816 AATTCTACCCTACAGGGGTATTTCAGT
1 AATTCTACCCTACAGGGGTATTTTAGT
87175843 AATTCT
1 AATTCT
87175849 GTAAATCGAG
Statistics
Matches: 55, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.28, C:0.17, G:0.16, T:0.39
Consensus pattern (27 bp):
AATTCTACCCTACAGGGGTATTTTAGT
Found at i:87175861 original size:27 final size:27
Alignment explanation
Indices: 87175839--87176321 Score: 538
Period size: 27 Copynumber: 17.9 Consensus size: 27
87175829 AGGGGTATTT
87175839 CAGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
87175866 CAGTAATTCTGTAAA-CTGAGGGTAAAA
1 CAGTAATTCTGTAAATC-GAGGGTAAAA
* * *
87175893 CAGTAATTTTGTAAACCGAGGGCAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
** *
87175920 TGGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
87175947 -AGATAATTCTGTAAATCGAGGGTAAAA
1 CAG-TAATTCTGTAAATCGAGGGTAAAA
* *
87175974 TAGTAATTCTGTAAATTGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
87176001 CGGTAATTCTGTAAACCAAGGGTAAAC
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * *
87176028 CAATAATTCTATAAATCGATGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
87176055 CAGTAATTTTATAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
87176082 CGGTAATTCTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * ** * *
87176109 CGGTAATTCTATAAATAAATGGCAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
*
87176136 CAGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * *
87176163 CGGTAATTCTGTAAATTGAGAGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * * *
87176190 CAGTAATTCTGTAAATCAATGGCAAAG
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
87176217 CGGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* * * * *
87176244 CGGTAATTTTGTAAATCAATGGCAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
** *
87176271 TGGTAATTTTGTAAATCGAGGGTAAAA
1 CAGTAATTCTGTAAATCGAGGGTAAAA
* *
87176298 CGGTAATTCTGTAAATTGAGGGTA
1 CAGTAATTCTGTAAATCGAGGGTA
87176322 CTTTGGTAAT
Statistics
Matches: 385, Mismatches: 67, Indels: 8
0.84 0.15 0.02
Matches are distributed among these distances:
26 2 0.01
27 380 0.99
28 3 0.01
ACGTcount: A:0.40, C:0.10, G:0.22, T:0.28
Consensus pattern (27 bp):
CAGTAATTCTGTAAATCGAGGGTAAAA
Found at i:87176334 original size:81 final size:81
Alignment explanation
Indices: 87175841--87176321 Score: 597
Period size: 81 Copynumber: 5.9 Consensus size: 81
87175831 GGGTATTTCA
87175841 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAA-CTGAGGGTAAAACAGTAATTTTGT
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATC-GAGGGTAAAACAGTAATTTTGT
* * *
87175905 AAACCGAGGGCAAAATG
65 AAATCGAGGGTAAAACG
* * *
87175922 GTAATTTTGTAAATCGAGGGTAAAA-AGATAATTCTGTAAATCGAGGGTAAAATAGTAATTCTGT
1 GTAATTCTGTAAATCGAGGGTAAAACAG-TAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGT
*
87175986 AAATTGAGGGTAAAACG
65 AAATCGAGGGTAAAACG
* * * * * * *
87176003 GTAATTCTGTAAACCAAGGGTAAACCAATAATTCTATAAATCGATGGTAAAACAGTAATTTTATA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTA
87176068 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * ** * *
87176084 GTAATTCTGTAAATCGAGGGTAAAACGGTAATTCTATAAATAAATGGCAAAACAGTAATTTTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTA
87176149 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * * * *
87176165 GTAATTCTGTAAATTGAGAGTAAAACAGTAATTCTGTAAATCAATGGCAAAGCGGTAATTTTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTA
87176230 AATCGAGGGTAAAACG
66 AATCGAGGGTAAAACG
* * * * ** * * *
87176246 GTAATTTTGTAAATCAATGGCAAAATGGTAATTTTGTAAATCGAGGGTAAAACGGTAATTCTGTA
1 GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTA
*
87176311 AATTGAGGGTA
66 AATCGAGGGTA
87176322 CTTTGGTAAT
Statistics
Matches: 348, Mismatches: 49, Indels: 6
0.86 0.12 0.01
Matches are distributed among these distances:
80 2 0.01
81 344 0.99
82 2 0.01
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.28
Consensus pattern (81 bp):
GTAATTCTGTAAATCGAGGGTAAAACAGTAATTCTGTAAATCGAGGGTAAAACAGTAATTTTGTA
AATCGAGGGTAAAACG
Found at i:87178154 original size:25 final size:25
Alignment explanation
Indices: 87178126--87178174 Score: 64
Period size: 26 Copynumber: 2.0 Consensus size: 25
87178116 ATATATATCA
87178126 TAAA-ATAACACATAAAAGAAATAAT
1 TAAACATAACACATAAAA-AAATAAT
* *
87178151 TAAACATAGCATATAAAAAAATAA
1 TAAACATAACACATAAAAAAATAA
87178175 AACTATGCAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 10 0.48
26 11 0.52
ACGTcount: A:0.67, C:0.08, G:0.04, T:0.20
Consensus pattern (25 bp):
TAAACATAACACATAAAAAAATAAT
Found at i:87178692 original size:22 final size:21
Alignment explanation
Indices: 87178662--87178708 Score: 58
Period size: 22 Copynumber: 2.2 Consensus size: 21
87178652 TACAAATTAA
87178662 ATCTCCAAGATTACAAGATCAT
1 ATCTCCAAGATTAC-AGATCAT
* * *
87178684 ATCTTCAAGATTGCATATCAT
1 ATCTCCAAGATTACAGATCAT
87178705 ATCT
1 ATCT
87178709 AAGATTGTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 10 0.45
22 12 0.55
ACGTcount: A:0.36, C:0.21, G:0.09, T:0.34
Consensus pattern (21 bp):
ATCTCCAAGATTACAGATCAT
Found at i:87178714 original size:19 final size:19
Alignment explanation
Indices: 87178679--87178738 Score: 88
Period size: 17 Copynumber: 3.2 Consensus size: 19
87178669 AGATTACAAG
87178679 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
87178700 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
87178717 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
87178736 ATC
1 ATC
87178739 CTTAAAGATT
Statistics
Matches: 37, Mismatches: 0, Indels: 6
0.86 0.00 0.14
Matches are distributed among these distances:
17 17 0.46
19 11 0.30
20 1 0.03
21 8 0.22
ACGTcount: A:0.35, C:0.17, G:0.10, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:87179316 original size:44 final size:43
Alignment explanation
Indices: 87179255--87179502 Score: 119
Period size: 44 Copynumber: 5.6 Consensus size: 43
87179245 ATCTTCAACT
* *
87179255 TGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCGATC
1 TGTTCACTGTAAACACAGGGATGCCATGCTGAAATCTTCGATC
* * * **
87179298 TGCTTCACTGTAAGCACAGGAATGTCA-GATCTGCTATGTCTTCGATC
1 TG-TTCACTGTAAACACAGGGATGCCATG--CTG--AAATCTTCGATC
* * ** * *
87179345 TGTTCCCTGTAAACATAGGGATGCCAAAT-CTGCTACCTTC-AAC
1 TGTTCACTGTAAACACAGGGATGCC--ATGCTGAAATCTTCGATC
* * * * *
87179388 TTGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTGATC
1 -TGTTCACTGTAAACACAGGGATGCCATGCTGAAATCTTCGATC
* * * * *
87179432 TGCTCCACTGTAAGCACAGGAATGTCA-GATCT-ACTATGTCTTCGATC
1 TG-TTCACTGTAAACACAGGGATGCCATG--CTGA--A-ATCTTCGATC
*
87179479 TGTTCCCTGTAAACACAGGGATGC
1 TGTTCACTGTAAACACAGGGATGC
87179503 AAAATCATCT
Statistics
Matches: 149, Mismatches: 39, Indels: 31
0.68 0.18 0.14
Matches are distributed among these distances:
42 2 0.01
43 13 0.09
44 68 0.46
45 4 0.03
46 39 0.26
47 22 0.15
48 1 0.01
ACGTcount: A:0.27, C:0.25, G:0.19, T:0.30
Consensus pattern (43 bp):
TGTTCACTGTAAACACAGGGATGCCATGCTGAAATCTTCGATC
Found at i:87179325 original size:135 final size:134
Alignment explanation
Indices: 87179153--87179508 Score: 419
Period size: 134 Copynumber: 2.6 Consensus size: 134
87179143 ATGCCAAATC
* * * * * *
87179153 ATCTTGGATCTGCTTCGA-TGTAAACATATGAAGGTCAGATCTGCTATGTCTTTAATCTACTCCC
1 ATCTTCGATCTGCTTC-ACTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTACTCCC
** * *
87179217 CATCGA-ATATGGAGATGCCGAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
65 CATAAACATA-GG-GATGCCAAATCTACTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCA
*
87179281 TGCTGAA
128 TGCTAAA
* ** *
87179288 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTACTCCCC
* * *
87179353 GTAAACATAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGT
66 ATAAACATAGGGATGCCAAATCTACTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGC
87179418 TAAA
131 TAAA
* * * * ** *
87179422 ATCTTTGATCTGCTCCACTGTAAGCACAGGAATGTCAGATCTACTATGTCTTCGATCTGTTCCCT
1 ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTACTCCCC
* * *
87179487 GTAAACACAGGGATGCAAAATC
66 ATAAACATAGGGATGCCAAATC
87179509 ATCTTGGATC
Statistics
Matches: 196, Mismatches: 23, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
134 136 0.69
135 57 0.29
136 3 0.02
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.31
Consensus pattern (134 bp):
ATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCAATCTACTCCCC
ATAAACATAGGGATGCCAAATCTACTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGC
TAAA
Found at i:87179408 original size:134 final size:134
Alignment explanation
Indices: 87179230--87179508 Score: 468
Period size: 134 Copynumber: 2.1 Consensus size: 134
87179220 CGAATATGGA
* * *
87179230 GATGCCGAATCTACTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTCG
1 GATGCCAAATCTACTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCG
* *
87179295 ATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATGTCTTCGATCTGTTCCCTGTAAACA
66 ATCTGCTCCACTGTAAGCACAGGAATGTCAGATCTACTATGTCTTCGATCTGTTCCCTGTAAACA
*
87179360 TAGG
131 CAGG
* * *
87179364 GATGCCAAATCTGCTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGTTAAAATCTTTG
1 GATGCCAAATCTACTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCG
87179429 ATCTGCTCCACTGTAAGCACAGGAATGTCAGATCTACTATGTCTTCGATCTGTTCCCTGTAAACA
66 ATCTGCTCCACTGTAAGCACAGGAATGTCAGATCTACTATGTCTTCGATCTGTTCCCTGTAAACA
87179494 CAGG
131 CAGG
*
87179498 GATGCAAAATC
1 GATGCCAAATC
87179509 ATCTTGGATC
Statistics
Matches: 135, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
134 135 1.00
ACGTcount: A:0.28, C:0.25, G:0.18, T:0.30
Consensus pattern (134 bp):
GATGCCAAATCTACTACCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTAAAATCTTCG
ATCTGCTCCACTGTAAGCACAGGAATGTCAGATCTACTATGTCTTCGATCTGTTCCCTGTAAACA
CAGG
Found at i:87179706 original size:353 final size:350
Alignment explanation
Indices: 87179142--87179858 Score: 906
Period size: 353 Copynumber: 2.0 Consensus size: 350
87179132 TCAATACCAA
* *
87179142 GATGCCAAATCATCTTGGATCTGCTTCGATGTAAACATATGAAGGTCAGATCTGCTATGTCTTTA
1 GATGCCAAATCATCTTGGATCTGCTTCAATGTAAACATATGAAGGTCAGATCTGCTATGTCTTCA
*
87179207 ATCTACTCCCCATCGAATATGGAGATGCCGAATCTACTATCTTCAACTTGTTCCCTATAAACACA
66 ATCTACTCCCCATCGAATATGGAGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACA
* * * * *
87179272 GGGATGCCATGCTGAAATCTTCGATCTGCTTCACTGTAAGCACAGGAATGTCAGATCTGCTATGT
131 GAGATGCAATGC---AATCTTCGATCTACTTCACTGTAAACACAGGAAGGTCAGATCTGCTATGT
* *
87179337 CTTCGATCTGTTCCCTGTAAACATAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCTATAAA
193 CTTCAAGCTGTTCCCTGTAAACATAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCTATAAA
* * * * * *
87179402 CACAGGGATGCCATGTTAAAATCTTTGATCTGCTCCACTGTAAGCACAGGAATGTCAGATCTACT
258 CACAGGGATGCCATGCTAAAATCTTCGATCTGCTCC-CTATAAACACAGGAATGCCAAATCTACT
* *
87179467 ATGTCTTCGA-TCTGTTCCCTGTAAACACAGG
322 A--TCTTCAACT-TGTTCCCTATAAACACAGG
*
87179498 GATGCAAAATCATCTTGGATCTGCTTCAATGTGAAA-ATATCCGAAGGTCAGATCTGCTATGTCT
1 GATGCCAAATCATCTTGGATCTGCTTCAATGT-AAACATAT--GAAGGTCAGATCTGCTATGTCT
* * * * * * * * *
87179562 TCGATCTTCTCTCCGTCGAATATGGAGATGCCAAATCT-GTTTCTTCAATTTGTTCTCTGA-CAA
63 TCAATCTACTCCCCATCGAATATGGAGATGCCAAATCTACTATCTTCAACTTGTTCCCT-ATAAA
* * * * * **
87179625 TATAGAGTTGCAAAT-C-ATCTTGGATCTACTTCAGTGTAAACACCTGAAGGTCAGATCTGCTAT
127 CACAGAGATGC-AATGCAATCTTCGATCTACTTCACTGTAAACACAGGAAGGTCAGATCTGCTAT
* * *
87179688 GTCTTTAAGCTGTTCCCTGTAAACATAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCTTATA
191 GTCTTCAAGCTGTTCCCTGTAAACATAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCTATA
* * * *
87179753 AACACAGGGATGCCATGCTGAAATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGC
256 AACACAGGGATGCCATGCTAAAATCTTCGATCTGCTCCCTATAAACACAGGAATGCCAAATCTAC
87179818 TATCTTCAACTTGTTCCCTATAAACACAGG
321 TATCTTCAACTTGTTCCCTATAAACACAGG
87179848 GATGCCAAATC
1 GATGCCAAATC
87179859 TGCTATCTTC
Statistics
Matches: 312, Mismatches: 43, Indels: 18
0.84 0.12 0.05
Matches are distributed among these distances:
350 34 0.11
351 1 0.00
352 23 0.07
353 134 0.43
356 34 0.11
357 29 0.09
358 57 0.18
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (350 bp):
GATGCCAAATCATCTTGGATCTGCTTCAATGTAAACATATGAAGGTCAGATCTGCTATGTCTTCA
ATCTACTCCCCATCGAATATGGAGATGCCAAATCTACTATCTTCAACTTGTTCCCTATAAACACA
GAGATGCAATGCAATCTTCGATCTACTTCACTGTAAACACAGGAAGGTCAGATCTGCTATGTCTT
CAAGCTGTTCCCTGTAAACATAGGGATGCCAAATCTGCTACCTTCAACTTGTTCCCTATAAACAC
AGGGATGCCATGCTAAAATCTTCGATCTGCTCCCTATAAACACAGGAATGCCAAATCTACTATCT
TCAACTTGTTCCCTATAAACACAGG
Found at i:87179737 original size:130 final size:132
Alignment explanation
Indices: 87179504--87179746 Score: 302
Period size: 130 Copynumber: 1.9 Consensus size: 132
87179494 CAGGGATGCA
* * * *
87179504 AAATCATCTTGGATCTGCTTCAATGTGAAAATATCCGAAGGTCAGATCTGCTATGTCTTCGATCT
1 AAATCATCTTGGATCTACTTCAATGTGAAAACATCCGAAGGTCAGATCTGCTATGTCTTCAAGCT
** * *
87179569 TCTCTCCGTCGAATATGGAGATGCCAAATCTGTTTCTTCAATTTGTTCTCTGACAATATAGAGTT
66 TCTCTCCGTAAAATATGGAGATGCCAAATCTGTATCTTCAACTTGTTCTCTGACAATATAGAGTT
87179634 GC
131 GC
* *
87179636 AAATCATCTTGGATCTACTTC-A-GTGTAAACA-CCTGAAGGTCAGATCTGCTATGTCTTTAAGC
1 AAATCATCTTGGATCTACTTCAATGTGAAAACATCC-GAAGGTCAGATCTGCTATGTCTTCAAGC
87179698 TGT-TC-CCTGTAAACATA-GG-GATGCCAAATCTGCTATCTTCAACTTGTTC
65 T-TCTCTCC-GTAAA-ATATGGAGATGCCAAATCTG-TATCTTCAACTTGTTC
87179747 CTTATAAACA
Statistics
Matches: 96, Mismatches: 10, Indels: 12
0.81 0.08 0.10
Matches are distributed among these distances:
129 17 0.18
130 54 0.56
131 5 0.05
132 20 0.21
ACGTcount: A:0.26, C:0.21, G:0.18, T:0.35
Consensus pattern (132 bp):
AAATCATCTTGGATCTACTTCAATGTGAAAACATCCGAAGGTCAGATCTGCTATGTCTTCAAGCT
TCTCTCCGTAAAATATGGAGATGCCAAATCTGTATCTTCAACTTGTTCTCTGACAATATAGAGTT
GC
Found at i:87179762 original size:44 final size:44
Alignment explanation
Indices: 87179698--87180074 Score: 471
Period size: 44 Copynumber: 8.6 Consensus size: 44
87179688 GTCTTTAAGC
* *
87179698 TGTTCCCTGTAAACATAGGGATGCCAAATCTGCTATCTTCAACT
1 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
* ** *
87179742 TGTTCCTTATAAACACAGGGATGCC--ATGCTGAAATCTTCGA-T
1 TGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCAACT
87179784 CTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 -TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
87179829 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
** **
87179873 TGTTCCCTATAAACACAGGGATGCC--ATGCTGAAATCTTTGA-T
1 TGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCAACT
* * * * * * * *
87179915 CTGCTTCGCTGTAAGCACAGGAATGTCAGATCTACTATCTTCGA-T
1 -TG-TTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
87179960 CTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 -TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
*
87180005 TGTTCCCCATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
*
87180049 TGTTCCCCATAAACACAGGGATGCCA
1 TGTTCCCTATAAACACAGGGATGCCA
87180075 TGCTGGAATC
Statistics
Matches: 290, Mismatches: 32, Indels: 22
0.84 0.09 0.06
Matches are distributed among these distances:
42 6 0.02
43 45 0.16
44 220 0.76
45 17 0.06
46 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (44 bp):
TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
Found at i:87179934 original size:88 final size:86
Alignment explanation
Indices: 87179679--87180162 Score: 431
Period size: 88 Copynumber: 5.5 Consensus size: 86
87179669 TGAAGGTCAG
* * * * *
87179679 ATCTGCTATGTCTTTAAGCTGTTCCCTGTAAACATAGGGATGCCAAATCTGCTATCTTCAACTTG
1 ATCTGCTA--TCTTCAATCTGTTCCCTATAAACACAGGGATGCC--ATCTGCAATCTTCAACTTG
* *
87179744 TTCCTTATAAACACAGGGATGCC--
62 TTCCCTATAAACACAGGAATGCCAA
** * *
87179767 ATGCTGAAATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGT
1 AT-CTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCC--ATCTGCAATCTTCAACTTGT
*
87179832 TCCCTATAAACACAGGGATGCCAA
63 TCCCTATAAACACAGGAATGCCAA
* **
87179856 ATCTGCTATCTTCAA-CTTGTTCCCTATAAACACAGGGATGCCATGCTGAAATCTTTGA-TCTGC
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAT-CTGCAATCTTCAACT-TG-
* * * * *
87179919 TTCGCTGTAAGCACAGGAATGTCAG
62 TTCCCTATAAACACAGGAATGCCAA
* * *
87179944 ATCTACTATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTT
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCC--ATCTGCAATCTTCAACTTGTT
* *
87180009 CCCCATAAACACAGGGATGCCAA
64 CCCTATAAACACAGGAATGCCAA
* * **
87180032 ATCTGCTATCTTCAA-CTTGTTCCCCATAAACACAGGGATGCCATGCTGGAATCTTTGA-TCTGC
1 ATCTGCTATCTTCAATC-TGTTCCCTATAAACACAGGGATGCCAT-CTGCAATCTTCAACT-TG-
* * * * *
87180095 TTCGCTGTAAGCACAGGAATGTCAG
62 TTCCCTATAAACACAGGAATGCCAA
* ** *
87180120 ATCTGTTATCTTTGATCTGTTCCCTATAAACACAAGGATGCCA
1 ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCA
87180163 AATCTTGCTT
Statistics
Matches: 327, Mismatches: 53, Indels: 32
0.79 0.13 0.08
Matches are distributed among these distances:
86 6 0.02
87 96 0.29
88 203 0.62
89 19 0.06
90 3 0.01
ACGTcount: A:0.27, C:0.25, G:0.17, T:0.30
Consensus pattern (86 bp):
ATCTGCTATCTTCAATCTGTTCCCTATAAACACAGGGATGCCATCTGCAATCTTCAACTTGTTCC
CTATAAACACAGGAATGCCAA
Found at i:87179968 original size:176 final size:176
Alignment explanation
Indices: 87179775--87180175 Score: 723
Period size: 176 Copynumber: 2.3 Consensus size: 176
87179765 CCATGCTGAA
*
87179775 ATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATA
1 ATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATA
*
87179840 AACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGGATGCCATGCTGA
66 AACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGGATGCCATGCTGA
87179905 AATCTTTGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTACT
131 AATCTTTGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTACT
87179951 ATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATA
1 ATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATA
*
87180016 AACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGGATGCCATGCTGG
66 AACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGGATGCCATGCTGA
**
87180081 AATCTTTGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTGTT
131 AATCTTTGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTACT
* *
87180127 ATCTTTGATCTGTTCCCTATAAACACAAGGATGCCAAATCTTGCT-TCTT
1 ATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATC-TGCTATCTT
87180176 TGATCTACAT
Statistics
Matches: 217, Mismatches: 7, Indels: 2
0.96 0.03 0.01
Matches are distributed among these distances:
176 213 0.98
177 4 0.02
ACGTcount: A:0.27, C:0.26, G:0.16, T:0.31
Consensus pattern (176 bp):
ATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATA
AACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGGATGCCATGCTGA
AATCTTTGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTACT
Found at i:87180009 original size:132 final size:130
Alignment explanation
Indices: 87179697--87180074 Score: 526
Period size: 132 Copynumber: 2.9 Consensus size: 130
87179687 TGTCTTTAAG
* * *
87179697 CTGTTCCCTGTAAACATAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCTTATAAACACAGGG
1 CTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGG
* *
87179762 ATGCCATGCTGAAATCTTCGATCTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAA
66 ATGCCATGCTGAAATCTTCGATCTGTTCCCTATAAACACAGGAATGCCAAATCTACTATCTTCAA
87179827 CTTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGG
1 C-TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGG
* * * * * *
87179892 GATGCCATGCTGAAATCTTTGATCTGCTTCGCTGTAAGCACAGGAATGTCAGATCTACTATCTTC
65 GATGCCATGCTGAAATCTTCGATCTG-TTCCCTATAAACACAGGAATGCCAAATCTACTATCTTC
*
87179957 GAT
129 -AA
*
87179960 CTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCCATAAACACAGGG
1 CTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGG
** * * *
87180025 ATGCCAAAT-CTGCTATCTTC-AACTTGTTCCCCATAAACACAGGGATGCCA
66 ATGCC--ATGCTGAAATCTTCGATC-TGTTCCCTATAAACACAGGAATGCCA
87180075 TGCTGGAATC
Statistics
Matches: 219, Mismatches: 23, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
130 1 0.00
131 85 0.39
132 119 0.54
133 12 0.05
134 2 0.01
ACGTcount: A:0.28, C:0.26, G:0.16, T:0.29
Consensus pattern (130 bp):
CTGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACTTGTTCCCTATAAACACAGGG
ATGCCATGCTGAAATCTTCGATCTGTTCCCTATAAACACAGGAATGCCAAATCTACTATCTTCAA
Found at i:87181141 original size:11 final size:11
Alignment explanation
Indices: 87181079--87181141 Score: 72
Period size: 11 Copynumber: 5.6 Consensus size: 11
87181069 GGCCTCTCCA
*
87181079 TTTTATTCTTT
1 TTTTTTTCTTT
* *
87181090 CTTTTTTCTCT
1 TTTTTTTCTTT
*
87181101 TTTTTCTCTTT
1 TTTTTTTCTTT
*
87181112 ATTTTTTCTTT
1 TTTTTTTCTTT
87181123 TTTATTTTCTTT
1 TTT-TTTTCTTT
87181135 TTTTTTT
1 TTTTTTT
87181142 GAAATAGAAG
Statistics
Matches: 42, Mismatches: 9, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
11 31 0.74
12 11 0.26
ACGTcount: A:0.05, C:0.13, G:0.00, T:0.83
Consensus pattern (11 bp):
TTTTTTTCTTT
Found at i:87181223 original size:20 final size:20
Alignment explanation
Indices: 87181192--87181251 Score: 59
Period size: 20 Copynumber: 2.9 Consensus size: 20
87181182 TGGCCTCTCC
87181192 ATTTTATTCTTTCTTTTTTCT
1 ATTTT-TTCTTTCTTTTTTCT
* *
87181213 CTTTTTTCTTT-TTATTTTTT
1 ATTTTTTCTTTCTT-TTTTCT
*
87181233 ATTTTTTATTTTCTTTTTT
1 ATTTTTT-CTTTCTTTTTT
87181252 TTTGAAATAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
19 2 0.06
20 17 0.53
21 11 0.34
22 2 0.06
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (20 bp):
ATTTTTTCTTTCTTTTTTCT
Found at i:87181224 original size:14 final size:12
Alignment explanation
Indices: 87181214--87181254 Score: 55
Period size: 12 Copynumber: 3.3 Consensus size: 12
87181204 CTTTTTTCTC
87181214 TTTTTTCTTTTT
1 TTTTTTCTTTTT
*
87181226 ATTTTTTATTTTT
1 -TTTTTTCTTTTT
*
87181239 TATTTTCTTTTT
1 TTTTTTCTTTTT
87181251 TTTT
1 TTTT
87181255 GAAATAGAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
12 13 0.54
13 11 0.46
ACGTcount: A:0.07, C:0.05, G:0.00, T:0.88
Consensus pattern (12 bp):
TTTTTTCTTTTT
Found at i:87181230 original size:6 final size:7
Alignment explanation
Indices: 87181193--87181253 Score: 54
Period size: 7 Copynumber: 8.6 Consensus size: 7
87181183 GGCCTCTCCA
87181193 TTTTATT
1 TTTTATT
* *
87181200 CTTTCTT
1 TTTTATT
*
87181207 TTTTCTCT
1 TTTTAT-T
87181215 TTTT-TCT
1 TTTTAT-T
87181222 TTTTATT
1 TTTTATT
87181229 TTTTATT
1 TTTTATT
87181236 TTTTATT
1 TTTTATT
87181243 TTCTT-TT
1 TT-TTATT
87181250 TTTT
1 TTTT
87181254 TGAAATAGAA
Statistics
Matches: 48, Mismatches: 3, Indels: 7
0.83 0.05 0.12
Matches are distributed among these distances:
6 2 0.04
7 38 0.79
8 8 0.17
ACGTcount: A:0.07, C:0.10, G:0.00, T:0.84
Consensus pattern (7 bp):
TTTTATT
Found at i:87181253 original size:29 final size:29
Alignment explanation
Indices: 87181193--87181254 Score: 72
Period size: 29 Copynumber: 2.1 Consensus size: 29
87181183 GGCCTCTCCA
* *
87181193 TTTTATTCTTTCTTTTTTCTCTTTTTTCT
1 TTTTATTCTTTATTTTTTATCTTTTTTCT
* *
87181222 TTTTATTTTTTATTTTTTAT-TTTCTTTTT
1 TTTTATTCTTTATTTTTTATCTTT-TTTCT
87181251 TTTT
1 TTTT
87181255 GAAATAGAAG
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
28 3 0.11
29 25 0.89
ACGTcount: A:0.06, C:0.10, G:0.00, T:0.84
Consensus pattern (29 bp):
TTTTATTCTTTATTTTTTATCTTTTTTCT
Found at i:87181290 original size:113 final size:114
Alignment explanation
Indices: 87181048--87181298 Score: 468
Period size: 114 Copynumber: 2.2 Consensus size: 114
87181038 TCTCAAGGCA
*
87181048 CCCTTTGCGGATTTTCACCTTGGCCTCTCCATTTTATTCTTTCTTTTTTCTCTTTTTTCTCTTTA
1 CCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTATTCTTTCTTTTTTCTCTTTTTTCTCTTTA
*
87181113 TTTTTTCTTTTTTATTTTCTTTTTTTTTTGAAATAGAAGTCCAAAAGTG
66 TTTTTTATTTTTTATTTTCTTTTTTTTTTGAAATAGAAGTCCAAAAGTG
*
87181162 CCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTATTCTTTCTTTTTTCTCTTTTTTCTTTTTA
1 CCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTATTCTTTCTTTTTTCTCTTTTTTCTCTTTA
87181227 TTTTTTATTTTTTATTTTC-TTTTTTTTTGAAATAGAAGTCCAAAAGTG
66 TTTTTTATTTTTTATTTTCTTTTTTTTTTGAAATAGAAGTCCAAAAGTG
87181275 CCCTTTGCGGGTTTTCACCTTGGC
1 CCCTTTGCGGGTTTTCACCTTGGC
87181299 TTCCCTTCTC
Statistics
Matches: 134, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
113 53 0.40
114 81 0.60
ACGTcount: A:0.13, C:0.20, G:0.11, T:0.56
Consensus pattern (114 bp):
CCCTTTGCGGGTTTTCACCTTGGCCTCTCCATTTTATTCTTTCTTTTTTCTCTTTTTTCTCTTTA
TTTTTTATTTTTTATTTTCTTTTTTTTTTGAAATAGAAGTCCAAAAGTG
Found at i:87186371 original size:24 final size:25
Alignment explanation
Indices: 87186343--87186393 Score: 70
Period size: 26 Copynumber: 2.1 Consensus size: 25
87186333 AACAATATAT
87186343 ATAA-TAAA-ATAGCACATAAAAGAA
1 ATAATTAAACATAGCACATAAAA-AA
*
87186367 ATAATTAAACATAGCATATAAAAAA
1 ATAATTAAACATAGCACATAAAAAA
87186392 AT
1 AT
87186394 GAAACTATGC
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
24 4 0.17
25 8 0.33
26 12 0.50
ACGTcount: A:0.65, C:0.08, G:0.06, T:0.22
Consensus pattern (25 bp):
ATAATTAAACATAGCACATAAAAAA
Found at i:87186941 original size:19 final size:19
Alignment explanation
Indices: 87186907--87187004 Score: 146
Period size: 19 Copynumber: 5.2 Consensus size: 19
87186897 AGATTACAAG
87186907 ATCATATCTTTAAGATTGCAT
1 ATCATATC--TAAGATTGCAT
87186928 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
87186947 ATCATAACTAAGATTG--T
1 ATCATATCTAAGATTGCAT
87186964 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
*
87186983 ATCATATCTAAGATTGCGT
1 ATCATATCTAAGATTGCAT
87187002 ATC
1 ATC
87187005 CTTAAAGATT
Statistics
Matches: 72, Mismatches: 3, Indels: 6
0.89 0.04 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.67
21 8 0.11
ACGTcount: A:0.36, C:0.15, G:0.11, T:0.38
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:87186970 original size:36 final size:37
Alignment explanation
Indices: 87186917--87186998 Score: 139
Period size: 36 Copynumber: 2.2 Consensus size: 37
87186907 ATCATATCTT
87186917 TAAGATTGCATATCATATCTAAGATTGCATATCATAAC
1 TAAGATTG-ATATCATATCTAAGATTGCATATCATAAC
*
87186955 TAAGATTG-TATCATATCTAAGATTGCATATCATATC
1 TAAGATTGATATCATATCTAAGATTGCATATCATAAC
87186991 TAAGATTG
1 TAAGATTG
87186999 CGTATCCTTA
Statistics
Matches: 43, Mismatches: 1, Indels: 2
0.93 0.02 0.04
Matches are distributed among these distances:
36 35 0.81
38 8 0.19
ACGTcount: A:0.38, C:0.13, G:0.12, T:0.37
Consensus pattern (37 bp):
TAAGATTGATATCATATCTAAGATTGCATATCATAAC
Found at i:87187369 original size:28 final size:28
Alignment explanation
Indices: 87187329--87187391 Score: 90
Period size: 28 Copynumber: 2.2 Consensus size: 28
87187319 GTTATTATCA
87187329 ACCCCATAAGTTATAAAACTCTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
* * * *
87187357 ACCCCATAAGTTATGAGATTTTTCCTAT
1 ACCCCATAAGTTATAAAACTCTTCCTAT
87187385 ACCCCAT
1 ACCCCAT
87187392 TATTTTGGGA
Statistics
Matches: 31, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 31 1.00
ACGTcount: A:0.32, C:0.29, G:0.06, T:0.33
Consensus pattern (28 bp):
ACCCCATAAGTTATAAAACTCTTCCTAT
Found at i:87188406 original size:25 final size:26
Alignment explanation
Indices: 87188372--87188428 Score: 80
Period size: 27 Copynumber: 2.2 Consensus size: 26
87188362 GGTCATTTTT
**
87188372 TTAAAAAAATT-AATAGTTTGGTGAC
1 TTAAAAAAATTAAATAGTTCAGTGAC
87188397 TTAAAAAAATTAGAATAGTTCAGTGAC
1 TTAAAAAAATTA-AATAGTTCAGTGAC
87188424 TTAAA
1 TTAAA
87188429 TTAAAACTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
25 11 0.39
27 17 0.61
ACGTcount: A:0.47, C:0.05, G:0.14, T:0.33
Consensus pattern (26 bp):
TTAAAAAAATTAAATAGTTCAGTGAC
Found at i:87191314 original size:26 final size:26
Alignment explanation
Indices: 87191276--87191333 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
87191266 CATGAAATTC
87191276 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
87191302 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
87191328 TTATCA
1 TTATCA
87191334 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:87191415 original size:26 final size:26
Alignment explanation
Indices: 87191386--87191459 Score: 130
Period size: 26 Copynumber: 2.8 Consensus size: 26
87191376 CATTTTGTCT
87191386 ACATTTACCTAACCCATTATCATGAA
1 ACATTTACCTAACCCATTATCATGAA
*
87191412 ACATTTACCTAACCCATTATCATGGA
1 ACATTTACCTAACCCATTATCATGAA
*
87191438 ACATTTACCTAACCTATTATCA
1 ACATTTACCTAACCCATTATCA
87191460 ATTTGTATCA
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 46 1.00
ACGTcount: A:0.36, C:0.27, G:0.04, T:0.32
Consensus pattern (26 bp):
ACATTTACCTAACCCATTATCATGAA
Found at i:87191501 original size:126 final size:126
Alignment explanation
Indices: 87191276--87191514 Score: 478
Period size: 126 Copynumber: 1.9 Consensus size: 126
87191266 CATGAAATTC
87191276 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAATTTGTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAATTTGTA
87191341 TCAATTTGTACCATAAATTATGGATATCAAGTGCACATTTTGTCTACATTTACCTAACCCA
66 TCAATTTGTACCATAAATTATGGATATCAAGTGCACATTTTGTCTACATTTACCTAACCCA
87191402 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAATTTGTA
1 TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAATTTGTA
87191467 TCAATTTGTACCATAAATTATGGATATCAAGTGCACATTTTGTCTACA
66 TCAATTTGTACCATAAATTATGGATATCAAGTGCACATTTTGTCTACA
87191515 ACAACATGAT
Statistics
Matches: 113, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
126 113 1.00
ACGTcount: A:0.34, C:0.21, G:0.08, T:0.37
Consensus pattern (126 bp):
TTATCATGAAACATTTACCTAACCCATTATCATGGAACATTTACCTAACCTATTATCAATTTGTA
TCAATTTGTACCATAAATTATGGATATCAAGTGCACATTTTGTCTACATTTACCTAACCCA
Found at i:87196452 original size:20 final size:20
Alignment explanation
Indices: 87196427--87196464 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
87196417 GACTTAATGG
87196427 AAAGGTTCATAATTATATGA
1 AAAGGTTCATAATTATATGA
* *
87196447 AAAGGTTGATGATTATAT
1 AAAGGTTCATAATTATAT
87196465 AATGTATCTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.42, C:0.03, G:0.18, T:0.37
Consensus pattern (20 bp):
AAAGGTTCATAATTATATGA
Found at i:87199072 original size:27 final size:26
Alignment explanation
Indices: 87199042--87199218 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 26
87199032 AAATTGTGCG
*
87199042 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTA
* *
87199069 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCG-ATTGACTATGTA
* **
87199095 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCG-ATTGACTATGTA
87199123 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTA
* * *
87199151 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTA
* *
87199178 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTA
*
87199205 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
87199219 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTA
Found at i:87199161 original size:82 final size:81
Alignment explanation
Indices: 87199038--87199197 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
87199028 GATTAAATTG
* * *
87199038 TGCGGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
1 TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTA
87199102 AGTGTGCGAATTGACCA
65 AGTGTGCGAATTGACCA
** *
87199119 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TGCGGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
*
87199184 AGTGTGCGAGTTGA
65 AGTGTGCGAATTGA
87199198 TTATATAGCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 22 0.31
82 48 0.69
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:87199209 original size:82 final size:81
Alignment explanation
Indices: 87199042--87199218 Score: 212
Period size: 82 Copynumber: 2.2 Consensus size: 81
87199032 AAATTGTGCG
* * *
87199042 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
87199107 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
87199123 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
87199187 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
87199205 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
87199219 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Found at i:87203199 original size:29 final size:29
Alignment explanation
Indices: 87203157--87203214 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
87203147 ACCGCGTATT
* *
87203157 GATGATCTGTTCGATCAATTAAAGGGAGC
1 GATGATCTGTTCGACCAACTAAAGGGAGC
* *
87203186 GATGATTTGTTCGACCAACTGAAGGGAGC
1 GATGATCTGTTCGACCAACTAAAGGGAGC
87203215 CTCAGTGTTC
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.29, C:0.16, G:0.29, T:0.26
Consensus pattern (29 bp):
GATGATCTGTTCGACCAACTAAAGGGAGC
Found at i:87206279 original size:59 final size:59
Alignment explanation
Indices: 87206198--87206317 Score: 240
Period size: 59 Copynumber: 2.0 Consensus size: 59
87206188 TAAAATTTTC
87206198 GGAGTTGATTTGATTAAAGATGCCGAACAAAAAGTAAAGGTAATCCGCGAAAGTCTGAA
1 GGAGTTGATTTGATTAAAGATGCCGAACAAAAAGTAAAGGTAATCCGCGAAAGTCTGAA
87206257 GGAGTTGATTTGATTAAAGATGCCGAACAAAAAGTAAAGGTAATCCGCGAAAGTCTGAA
1 GGAGTTGATTTGATTAAAGATGCCGAACAAAAAGTAAAGGTAATCCGCGAAAGTCTGAA
87206316 GG
1 GG
87206318 TAGCCACAGA
Statistics
Matches: 61, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 61 1.00
ACGTcount: A:0.40, C:0.12, G:0.27, T:0.22
Consensus pattern (59 bp):
GGAGTTGATTTGATTAAAGATGCCGAACAAAAAGTAAAGGTAATCCGCGAAAGTCTGAA
Found at i:87208271 original size:12 final size:12
Alignment explanation
Indices: 87208254--87208280 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
87208244 ATTCCGAAGT
87208254 ATATATATATAC
1 ATATATATATAC
87208266 ATATATATATAC
1 ATATATATATAC
87208278 ATA
1 ATA
87208281 AGTATCATTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:87208788 original size:27 final size:26
Alignment explanation
Indices: 87208758--87208934 Score: 167
Period size: 27 Copynumber: 6.5 Consensus size: 26
87208748 AAATTGTGCG
*
87208758 GCACTAAGTGTGCGATTCGACTATGTT
1 GCACTAAGTGTGCGATT-GACTATGTA
* *
87208785 GCACTAAGTGTGCGAAATGAATATG-A
1 GCACTAAGTGTGCG-ATTGACTATGTA
* **
87208811 TGCACTAAGTGTGCGAATTGACCATGCG
1 -GCACTAAGTGTGCG-ATTGACTATGTA
87208839 GCACTAAGTGTGCGAGTCTGACTATGTA
1 GCACTAAGTGTGCGA-T-TGACTATGTA
* * *
87208867 GCACTAAGTGTGCGATTTGATTACGTG
1 GCACTAAGTGTGCGA-TTGACTATGTA
* *
87208894 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGA-TTGACTATGTA
*
87208921 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
87208935 GGCTCAATAT
Statistics
Matches: 126, Mismatches: 19, Indels: 10
0.81 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 100 0.79
28 25 0.20
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (26 bp):
GCACTAAGTGTGCGATTGACTATGTA
Found at i:87208877 original size:82 final size:81
Alignment explanation
Indices: 87208754--87208913 Score: 232
Period size: 82 Copynumber: 2.0 Consensus size: 81
87208744 GATTAAATTG
* * *
87208754 TGCGGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
1 TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACG-TGGCACTA
87208818 AGTGTGCGAATTGACCA
65 AGTGTGCGAATTGACCA
** *
87208835 TGCGGCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTGGCACTA
1 TGCGGCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTA
*
87208900 AGTGTGCGAGTTGA
65 AGTGTGCGAATTGA
87208914 TTATATAGCA
Statistics
Matches: 70, Mismatches: 7, Indels: 3
0.88 0.09 0.04
Matches are distributed among these distances:
81 22 0.31
82 48 0.69
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (81 bp):
TGCGGCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGTGGCACTAA
GTGTGCGAATTGACCA
Found at i:87208925 original size:82 final size:81
Alignment explanation
Indices: 87208758--87208934 Score: 212
Period size: 82 Copynumber: 2.2 Consensus size: 81
87208748 AAATTGTGCG
* * *
87208758 GCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGTGT
1 GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
* *
87208823 GCGAATTGACCATGCG
66 GCGAATTGACCATACA
** *
87208839 GCACTAAGTGTGCGAGTCTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TGGCACTAAGT
1 GCACTAAGTGTGCGAGTC-GACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACTAAGT
* ** *
87208903 GTGCGAGTTGATTATATA
64 GTGCGAATTGACCATACA
*
87208921 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
87208935 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
81 18 0.22
82 63 0.78
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGAGTCGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAAGTGT
GCGAATTGACCATACA
Done.