Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 257 of 297
Found at i:87792604 original size:8 final size:8
Alignment explanation
Indices: 87792591--87792620 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
87792581 CTAGATCGGT
87792591 AAAAGCCG
1 AAAAGCCG
87792599 AAAAGCCG
1 AAAAGCCG
*
87792607 AAATGCCG
1 AAAAGCCG
87792615 AAAAGC
1 AAAAGC
87792621 TGGTATTTTG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 20 1.00
ACGTcount: A:0.50, C:0.23, G:0.23, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:87793077 original size:27 final size:27
Alignment explanation
Indices: 87793037--87793148 Score: 111
Period size: 27 Copynumber: 4.1 Consensus size: 27
87793027 AGGAAGCGTC
* *
87793037 CTGGTGGCTATGCCACAATTATCAGAT
1 CTGGTGGCTCTGCCACAATTATCTGAT
*
87793064 CTGGTGGCTCTGCCAC-ATATATCTGTT
1 CTGGTGGCTCTGCCACAAT-TATCTGAT
* *
87793091 CTGGTGGCTCTACCACACTTATCTGTAT
1 CTGGTGGCTCTGCCACAATTATCTG-AT
* ** *
87793119 CTGGTGACTCTATCAC-ATTATCTGTT
1 CTGGTGGCTCTGCCACAATTATCTGAT
87793145 CTGG
1 CTGG
87793149 CAGCAATGCT
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 7 0.10
27 49 0.68
28 16 0.22
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACAATTATCTGAT
Found at i:87793141 original size:54 final size:54
Alignment explanation
Indices: 87793037--87793148 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
87793027 AGGAAGCGTC
* * *
87793037 CTGGTGGCTATGCCACAATTATCAGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATACCACAATTATCAGATCTGGTGACTCTACCACATATATCTGTT
* * * *
87793091 CTGGTGGCTCTACCACACTTATCTGTATCTGGTGACTCTATCACAT-TATCTGTT
1 CTGGTGGCTATACCACAATTATCAG-ATCTGGTGACTCTACCACATATATCTGTT
87793145 CTGG
1 CTGG
87793149 CAGCAATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 33 0.66
55 17 0.34
ACGTcount: A:0.19, C:0.25, G:0.21, T:0.36
Consensus pattern (54 bp):
CTGGTGGCTATACCACAATTATCAGATCTGGTGACTCTACCACATATATCTGTT
Found at i:87794190 original size:15 final size:14
Alignment explanation
Indices: 87794157--87794190 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
87794147 AAAAAACTCA
*
87794157 ATTTTCAAAATTCG
1 ATTTTCAAAATTAG
87794171 ATTTTCAAAATTTAG
1 ATTTTCAAAA-TTAG
87794186 ATTTT
1 ATTTT
87794191 TAGAAGGTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 10 0.56
15 8 0.44
ACGTcount: A:0.35, C:0.09, G:0.06, T:0.50
Consensus pattern (14 bp):
ATTTTCAAAATTAG
Found at i:87800910 original size:39 final size:40
Alignment explanation
Indices: 87800794--87800973 Score: 249
Period size: 40 Copynumber: 4.5 Consensus size: 40
87800784 ACCCAAGTAT
* *
87800794 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
87800833 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
**
87800873 CTTCGGGACTTAGCCCGGATAT-GTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
87800912 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
87800952 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
87800974 CATCCGAATA
Statistics
Matches: 128, Mismatches: 10, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
39 50 0.39
40 77 0.60
41 1 0.01
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:87800925 original size:79 final size:80
Alignment explanation
Indices: 87800794--87800973 Score: 249
Period size: 79 Copynumber: 2.3 Consensus size: 80
87800784 ACCCAAGTAT
* * *
87800794 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
* **
87800858 CACTAGCATGAATGC
66 AACTAGCACAAATGC
**
87800873 CTTCGGGACTTAGCCCGGATAT-GTC-ACTAGCATGAATGCCTTCGGGACTTAGCCCGGATATAG
1 CTTCGGGACTTAGCCCGGATATAG-CAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAG
*
87800936 TAACTTGCACAAATGC
65 TAACTAGCACAAATGC
87800952 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
87800974 CATCCGAATA
Statistics
Matches: 90, Mismatches: 9, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
79 81 0.90
80 9 0.10
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGCAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
AACTAGCACAAATGC
Found at i:87808047 original size:40 final size:41
Alignment explanation
Indices: 87807988--87808219 Score: 303
Period size: 40 Copynumber: 5.8 Consensus size: 41
87807978 CATTTGAATG
* *
87807988 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
* * *
87808028 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
* * *
87808068 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
* *
87808108 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
* *
87808148 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
* *
87808188 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGC
87808220 TTGTGGTTAT
Statistics
Matches: 168, Mismatches: 20, Indels: 8
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 161 0.96
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATT
Found at i:87808202 original size:120 final size:120
Alignment explanation
Indices: 87807988--87808239 Score: 418
Period size: 120 Copynumber: 2.1 Consensus size: 120
87807978 CATTTGAATG
* * *
87807988 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
87808053 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
66 TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
* *
87808108 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATATCCGGGCTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGATTATATCCGGGCTAAGACCCGAAGGC
* *
87808172 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTT
65 ATTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
87808228 ATATCC-GGCTAA
1 ATATCCGGGCTAA
87808240 ATTCCGAAGA
Statistics
Matches: 123, Mismatches: 8, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
119 6 0.05
120 114 0.93
121 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.27
Consensus pattern (120 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGCTATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATT
Found at i:87808235 original size:80 final size:80
Alignment explanation
Indices: 87807988--87808219 Score: 349
Period size: 80 Copynumber: 2.9 Consensus size: 80
87807978 CATTTGAATG
*
87807988 ATATCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
*
87808053 TTTGTGCGAGTTGCT
66 TTTGTGCGAGTTGAT
* *
87808068 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
87808133 TTTGTGCGAGTTGAT
66 TTTGTGCGAGTTGAT
* * * * * *
87808148 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATACCCGGGTTAAGACCCGAAGGC
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAG-TGATTTTATCCGGGCTAAGACCCGAAGGC
*
87808212 AATTGTGC
65 ATTTGTGC
87808220 TTGTGGTTAT
Statistics
Matches: 138, Mismatches: 13, Indels: 2
0.90 0.08 0.01
Matches are distributed among these distances:
80 136 0.99
81 2 0.01
ACGTcount: A:0.24, C:0.22, G:0.29, T:0.25
Consensus pattern (80 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
TTTGTGCGAGTTGAT
Found at i:87809897 original size:60 final size:59
Alignment explanation
Indices: 87809815--87809926 Score: 134
Period size: 59 Copynumber: 1.9 Consensus size: 59
87809805 GTATTGAACA
*
87809815 AAAAGGATGTCTTCATGGCAAAACTCCAGAAAGGAAAACCTTTATGGCGAGTACTAAATG
1 AAAAGGATGCCTTCATGGCAAAAC-CCAGAAAGGAAAACCTTTATGGCGAGTACTAAATG
** * * * * * *
87809875 AAAAGGATGCCTTTGTGTCAAAACCCTGTAAGGAAAGCCTTTGTGGTGAGTA
1 AAAAGGATGCCTTCATGGCAAAACCCAGAAAGGAAAACCTTTATGGCGAGTA
87809927 TTGGATGAAA
Statistics
Matches: 43, Mismatches: 9, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
59 23 0.53
60 20 0.47
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.24
Consensus pattern (59 bp):
AAAAGGATGCCTTCATGGCAAAACCCAGAAAGGAAAACCTTTATGGCGAGTACTAAATG
Found at i:87816380 original size:19 final size:19
Alignment explanation
Indices: 87816358--87816396 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
87816348 CCACTTACTA
87816358 CAATTCAAT-ACTTTCAATT
1 CAATT-AATAACTTTCAATT
*
87816377 CAATTAATAATTTTCAATT
1 CAATTAATAACTTTCAATT
87816396 C
1 C
87816397 TCAAACAATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 3 0.17
19 15 0.83
ACGTcount: A:0.38, C:0.18, G:0.00, T:0.44
Consensus pattern (19 bp):
CAATTAATAACTTTCAATT
Found at i:87816567 original size:22 final size:22
Alignment explanation
Indices: 87816539--87816584 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
87816529 ACCTAAAATG
87816539 TAAAATTTCCCTATAATTAGCT
1 TAAAATTTCCCTATAATTAGCT
87816561 TAAAATTTCCCTATAATTAGCT
1 TAAAATTTCCCTATAATTAGCT
87816583 TA
1 TA
87816585 CATTTTATAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.37, C:0.17, G:0.04, T:0.41
Consensus pattern (22 bp):
TAAAATTTCCCTATAATTAGCT
Found at i:87827868 original size:32 final size:32
Alignment explanation
Indices: 87827827--87827890 Score: 128
Period size: 32 Copynumber: 2.0 Consensus size: 32
87827817 GCTTCACATG
87827827 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
1 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
87827859 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
1 TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
87827891 AAGGTGGTGG
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.19, C:0.03, G:0.38, T:0.41
Consensus pattern (32 bp):
TCAGTTTGGGGTGTGTATTAATGTAGGATGGT
Found at i:87829958 original size:48 final size:48
Alignment explanation
Indices: 87829476--87829957 Score: 696
Period size: 48 Copynumber: 10.0 Consensus size: 48
87829466 TACATGAATC
*
87829476 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * * ** *
87829524 CACATAACATCGTCGATGCCATGTCCCAGACATAGTCTTACATTGACA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * *
87829572 CACATATCATCGCCGATGTCGTGTCCCAGACATGATCTTACACAGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
*
87829620 CATATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * *
87829668 CATATATCATCGTCGATGCCATGTCCCAGACATGGTCTTACACTGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * *
87829716 CACATATCATCACCGATGCCATGGCCCA-AGCATGGTCTTACACTGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGA-CATGGTCTTACACAGGCA
* *
87829764 CACATATCATCGCCGATGCCATGTCTCAAACATGGTCTTACACAGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* *
87829812 CACATATCATCGCCGATGCCATGTCCCAGACGTGGTCTTACACTGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * *
87829860 CACATATCATCACCGATGCCAAGTCCTAGACATGGTCTTACACAGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
* * **
87829908 CATATATCATCACCGATGCCATGTCCCAGACATGGTAGTACACAGGCA
1 CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
87829956 CA
1 CA
87829958 TTTTGCACGG
Statistics
Matches: 390, Mismatches: 42, Indels: 4
0.89 0.10 0.01
Matches are distributed among these distances:
47 1 0.00
48 388 0.99
49 1 0.00
ACGTcount: A:0.28, C:0.31, G:0.18, T:0.23
Consensus pattern (48 bp):
CACATATCATCGCCGATGCCATGTCCCAGACATGGTCTTACACAGGCA
Found at i:87837465 original size:48 final size:48
Alignment explanation
Indices: 87837387--87837559 Score: 253
Period size: 48 Copynumber: 3.7 Consensus size: 48
87837377 AGTACCAATT
87837387 CCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGTCGATG
1 CCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGTCGATG
* * **
87837435 CCATGTCCCAGACATGGTCTTATACTGGCACACATATCATCACCGATG
1 CCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGTCGATG
** * *
87837483 CCATGTCCCAGACATGGTCTTACACAGG---TTATACCATCGTCAATG
1 CCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGTCGATG
87837528 CCATGTCCCAGACATGGTCTTACACAGGCACA
1 CCATGTCCCAGACATGGTCTTACACAGGCACA
87837560 TTTAGTACGG
Statistics
Matches: 109, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
45 39 0.36
48 70 0.64
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (48 bp):
CCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGTCGATG
Found at i:87837549 original size:93 final size:94
Alignment explanation
Indices: 87837387--87837559 Score: 267
Period size: 93 Copynumber: 1.8 Consensus size: 94
87837377 AGTACCAATT
* *
87837387 CCATGTCCCAGACATGGTCTTACACAGGCACACATATCATCGTCGATGCCATGTCCCAGACATGG
1 CCATGTCCCAGACATGGTCTTACACAGG--CACATACCATCGTCAATGCCATGTCCCAGACATGG
* *
87837452 TCTTATACTGGCACACATATCATCACCGATG
64 TCTTACACAGGCACACATATCATCACCGATG
**
87837483 CCATGTCCCAGACATGGTCTTACACAGG-TTATACCATCGTCAATGCCATGTCCCAGACATGGTC
1 CCATGTCCCAGACATGGTCTTACACAGGCACATACCATCGTCAATGCCATGTCCCAGACATGGTC
87837547 TTACACAGGCACA
66 TTACACAGGCACA
87837560 TTTAGTACGG
Statistics
Matches: 71, Mismatches: 6, Indels: 3
0.89 0.08 0.04
Matches are distributed among these distances:
93 43 0.61
96 28 0.39
ACGTcount: A:0.27, C:0.31, G:0.18, T:0.24
Consensus pattern (94 bp):
CCATGTCCCAGACATGGTCTTACACAGGCACATACCATCGTCAATGCCATGTCCCAGACATGGTC
TTACACAGGCACACATATCATCACCGATG
Found at i:87839661 original size:55 final size:54
Alignment explanation
Indices: 87839602--87839761 Score: 200
Period size: 55 Copynumber: 3.0 Consensus size: 54
87839592 TAAGGTTTCT
87839602 AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-ACTAG
1 AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA-T-G
* * * * *
87839657 AAGGCAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAGTTCATG
1 AAGGC-AAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATG
* * *
87839711 -AGGCAAGGATACCATGTAAGACCATGTCGAGACATGGCAATGATAATTTCA
1 AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
87839762 AAAGGATACC
Statistics
Matches: 89, Mismatches: 13, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
52 4 0.04
53 38 0.43
54 1 0.01
55 41 0.46
56 5 0.06
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.21
Consensus pattern (54 bp):
AAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCATG
Found at i:87839755 original size:108 final size:110
Alignment explanation
Indices: 87839559--87839756 Score: 303
Period size: 108 Copynumber: 1.8 Consensus size: 110
87839549 TTTAAGAATA
87839559 CCATGTAAAAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
1 CCATGTAAAAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
*
87839624 CCATGTCAAGACATGGCATTGATAAGTTACTAGAAGGCAAAGGTC
66 CCATGTCAAGACATGGCAATGATAAGTTACTAGAAGGCAAAGGTC
* * * * *
87839669 CCATGTAAGACCATGCCAAGGCATGG-CATTGGTGA-G-TTCATGAGGCAAGGATACCATGTAAG
1 CCATGTAAAAACATGCCAAGGCATGGTAATTGGTAAGGTTTC-TAAGGCAAGGATACCATGTAAG
*
87839731 ACCATGTCGAGACATGGCAATGATAA
65 ACCATGTCAAGACATGGCAATGATAA
87839757 TTTCAAAAGG
Statistics
Matches: 80, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
107 3 0.04
108 46 0.57
109 7 0.09
110 24 0.30
ACGTcount: A:0.35, C:0.18, G:0.26, T:0.22
Consensus pattern (110 bp):
CCATGTAAAAACATGCCAAGGCATGGTAATTGGTAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTACTAGAAGGCAAAGGTC
Found at i:87840019 original size:16 final size:16
Alignment explanation
Indices: 87839998--87840028 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87839988 ATAAATTTGA
87839998 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
87840014 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
87840029 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:87844106 original size:23 final size:23
Alignment explanation
Indices: 87844068--87844126 Score: 95
Period size: 23 Copynumber: 2.6 Consensus size: 23
87844058 TGGGGTTTTG
87844068 GGCC-AGGCC-ATGTGATCCATAC
1 GGCCAAGGCCAAT-TGATCCATAC
87844090 GGCCAAGGCCAATTGATCCATAC
1 GGCCAAGGCCAATTGATCCATAC
87844113 GGCCAAGGCCAATT
1 GGCCAAGGCCAATT
87844127 TGGGCCGTAT
Statistics
Matches: 35, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
22 4 0.11
23 29 0.83
24 2 0.06
ACGTcount: A:0.27, C:0.31, G:0.25, T:0.17
Consensus pattern (23 bp):
GGCCAAGGCCAATTGATCCATAC
Found at i:87847016 original size:39 final size:40
Alignment explanation
Indices: 87846952--87847059 Score: 148
Period size: 39 Copynumber: 2.7 Consensus size: 40
87846942 TATTCGGATG
* * *
87846952 ATAATCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
* *
87846992 A-ATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACT
1 ATA-ACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
87847031 ATAACCGGGCTAAGTCCCGAAGGCATTTG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG
87847060 AGCAAGTAGC
Statistics
Matches: 59, Mismatches: 6, Indels: 6
0.83 0.08 0.08
Matches are distributed among these distances:
39 34 0.58
40 25 0.42
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTGACT
Found at i:87847081 original size:39 final size:40
Alignment explanation
Indices: 87846957--87847082 Score: 145
Period size: 39 Copynumber: 3.2 Consensus size: 40
87846947 GGATGATAAT
* *
87846957 CGGGCTAAGTCTCGAAGGCATTTGTGCTAGT-GACTA-ATTC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAG-CTATA-TC
* *
87846997 CGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTA-CTATAAC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAG-TAGCTATATC
*
87847036 CGGGCTAAGTCCCGAAGGCATTTGAGCAAGTAGCTATATC
1 CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATC
87847076 C-GGCTAA
1 CGGGCTAA
87847083 ATTCTGAAGG
Statistics
Matches: 75, Mismatches: 6, Indels: 11
0.82 0.07 0.12
Matches are distributed among these distances:
39 39 0.52
40 36 0.48
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CGGGCTAAGTCCCGAAGGCATTTGTGCAAGTAGCTATATC
Found at i:87854304 original size:40 final size:40
Alignment explanation
Indices: 87854242--87854471 Score: 202
Period size: 40 Copynumber: 5.8 Consensus size: 40
87854232 CGGATGATAA
* * **
87854242 CCGGGCTAAGTCCCG-AGAGCATTTGAGCTAATGGCTAATT
1 CCGGGCTAAGTCCCGAAG-GCATTTGTGCGAATTACTAATT
* * ** *
87854282 CTGGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTA-ATT
*
87854323 CCGGGCTAAGTCCCGAAGGCCTTTGTGC-AAGTTACT-ATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAA-TTACTAAT-T
* *
87854363 CCGGGC-ACGTCCCGAAGGCATTTGTGCGAATTACTAAAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATT
* * * *
87854402 CTGGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAA--
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTA--CTAATT
* *
87854442 CCGGGCTATGTCCCGAAGGCATTTGAGCGA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGA
87854472 GTAGCTATAT
Statistics
Matches: 153, Mismatches: 28, Indels: 18
0.77 0.14 0.09
Matches are distributed among these distances:
39 32 0.21
40 84 0.55
41 33 0.22
42 4 0.03
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTACTAATT
Found at i:87854337 original size:41 final size:40
Alignment explanation
Indices: 87854284--87854482 Score: 240
Period size: 40 Copynumber: 5.0 Consensus size: 40
87854274 GGCTAATTCT
* *
87854284 GGGCTAAGTCCCGAAGGCATTCGTGCGAGCTACTATATCCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT-CC
* *
87854325 GGGCTAAGTCCCGAAGGCCTTTGTGCAAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
87854365 GGGC-ACGTCCCGAAGGCATTTGTGCGAATTACTAAATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* * * *
87854404 GGGCTAAGTCCCAAAGGCAATTGTGCGAGTTACTCTAACC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
* *
87854444 GGGCTATGTCCCGAAGGCATTTGAGCGAG-TAGCTATATC
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATATC
87854483 TGGTTAAATT
Statistics
Matches: 132, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
39 35 0.27
40 63 0.48
41 34 0.26
ACGTcount: A:0.24, C:0.25, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
Found at i:87855638 original size:237 final size:237
Alignment explanation
Indices: 87855213--87855686 Score: 750
Period size: 237 Copynumber: 2.0 Consensus size: 237
87855203 AATAGATGCT
87855213 GATAGCAGTAGTGATGTGAATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAA
1 GATAGCAGTAGTGATGTGAATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAA
* *
87855278 TAAATTATGTAAACAAACCTTGAAGAATCTACTTTCATAGGAAAGTAACGAAACAATCATATGGA
66 TAAATCATGTAAACAAACCTTGAAGAATCTACTTTCATAGGAAAGTAACGAAACAATCATATGAA
* * * * * * *
87855343 CAGTATGTTAAGAGATATTCAGGTTCTCGTGAGACAGGACCAGAACGGGTTCTGGATTCCTTGTT
131 CAGTATATTAAGAGAAATTCAAGTTCTCGCGAAACAGGACCAGAACAGGTTCTGGATTCCCTGTT
*
87855408 CCGACTTTGGAAATTGATTATAAATTAACCAGAGATAATTAG
196 CCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAG
87855450 GATAGCAGTAGTGATGTGAATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAA
1 GATAGCAGTAGTGATGTGAATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAA
* * * *
87855515 TAAATCATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACGAAACGATCATATGAA
66 TAAATCATGTAAACAAACCTTGAAGAATCTACTTTCATAGGAAAGTAACGAAACAATCATATGAA
* * * * * * *
87855580 CAGTATATTATGAGAAATTTAAGTTTTCGCGAAACAGGGCTAGAACAGTTTTTGGATTCCCTGTT
131 CAGTATATTAAGAGAAATTCAAGTTCTCGCGAAACAGGACCAGAACAGGTTCTGGATTCCCTGTT
*
87855645 TCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAG
196 CCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAG
87855687 AAGTCATGCC
Statistics
Matches: 215, Mismatches: 22, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
237 215 1.00
ACGTcount: A:0.39, C:0.11, G:0.20, T:0.29
Consensus pattern (237 bp):
GATAGCAGTAGTGATGTGAATGTGAAAAATCACTAAAAATAGTAGGAATGGAATTAAATAGTGAA
TAAATCATGTAAACAAACCTTGAAGAATCTACTTTCATAGGAAAGTAACGAAACAATCATATGAA
CAGTATATTAAGAGAAATTCAAGTTCTCGCGAAACAGGACCAGAACAGGTTCTGGATTCCCTGTT
CCGACTTTGGAAATTCATTATAAATTAACCAGAGATAATTAG
Found at i:87863195 original size:6 final size:6
Alignment explanation
Indices: 87863184--87863220 Score: 67
Period size: 6 Copynumber: 6.3 Consensus size: 6
87863174 ATAAAGCCTC
87863184 TTTAAT TTTAAT TTT-AT TTTAAT TTTAAT TTTAAT TT
1 TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TTTAAT TT
87863221 GGGAATTTAG
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
5 5 0.17
6 25 0.83
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (6 bp):
TTTAAT
Found at i:87863206 original size:17 final size:17
Alignment explanation
Indices: 87863184--87863216 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
87863174 ATAAAGCCTC
87863184 TTTAATTTTAATTTTAT
1 TTTAATTTTAATTTTAT
87863201 TTTAATTTTAATTTTA
1 TTTAATTTTAATTTTA
87863217 ATTTGGGAAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (17 bp):
TTTAATTTTAATTTTAT
Found at i:87875874 original size:27 final size:26
Alignment explanation
Indices: 87875837--87875922 Score: 118
Period size: 27 Copynumber: 3.2 Consensus size: 26
87875827 AGCATGGCTG
*
87875837 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
87875863 CCAGATACAGATATTGTGACAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * *
87875890 CCAAAACAGATATTTGTGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
87875917 CCAGAA
1 CCAGAA
87875923 ATAGGTAATG
Statistics
Matches: 53, Mismatches: 5, Indels: 3
0.87 0.08 0.05
Matches are distributed among these distances:
26 12 0.23
27 41 0.77
ACGTcount: A:0.38, C:0.22, G:0.21, T:0.19
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:87876301 original size:27 final size:26
Alignment explanation
Indices: 87876262--87876344 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
87876252 TTGATCGGTC
* *
87876262 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
* *
87876288 ATACAGATATTGTGGCAGAGCCTCCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
87876315 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
87876342 AAC
1 AAC
87876345 GCTTCCTCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.36, C:0.22, G:0.22, T:0.20
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:87876597 original size:27 final size:27
Alignment explanation
Indices: 87876567--87876800 Score: 270
Period size: 27 Copynumber: 8.7 Consensus size: 27
87876557 GGGGTAAAAT
* * * *
87876567 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87876594 GGTAATTCTAACCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87876621 AGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87876648 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
87876675 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
87876702 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87876729 GGTATTTCTACCCCACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87876756 GGTATTTCTACCTTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* * *
87876783 AGTAATGCTAGCCTACAG
1 GGTAATTCTACCCTACAG
87876801 ATATGAGATT
Statistics
Matches: 178, Mismatches: 29, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 178 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:87876691 original size:81 final size:81
Alignment explanation
Indices: 87876569--87876800 Score: 311
Period size: 81 Copynumber: 2.9 Consensus size: 81
87876559 GGTAAAATGG
* * * * *
87876569 TAATTTTACCCCACAAGGGTATCTCGGTAATTCTAACCTACAGGGGTATTTTAGTAATTCTACCT
1 TAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
87876634 TACAGGGGTATTTCGA
66 TACAGGGGTATTTCGA
** * *
87876650 TAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
1 TAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
* *
87876715 TATAGGGGTATTTCGG
66 TACAGGGGTATTTCGA
* * * * * *
87876731 TATTTCTACCCCACAAGGGTATTTCGGTATTTCTACCTTACAAGGGTATTTCAGTAATGCTAGCC
1 TAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
87876796 TACAG
66 TACAG
87876801 ATATGAGATT
Statistics
Matches: 129, Mismatches: 22, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
81 129 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.35
Consensus pattern (81 bp):
TAATTCTACCCCACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTCAGTAATTCTACCC
TACAGGGGTATTTCGA
Found at i:87878909 original size:26 final size:26
Alignment explanation
Indices: 87878880--87878987 Score: 90
Period size: 27 Copynumber: 4.0 Consensus size: 26
87878870 AGCATGGCTG
*
87878880 CCAGAACAGATATTGTGACAGAGTCA
1 CCAGAACAGATATTGTGACAGAGCCA
* *
87878906 CCAGATACAGATACTGTGGCAGAGCCA
1 CCAGA-ACAGATATTGTGACAGAGCCA
* * * * *
87878933 CCAAAATAGATATTTATGGCATAGCCA
1 CCAGAACAGATA-TTGTGACAGAGCCA
* * *
87878960 CCAGAAACAGATAATGTGGCAAAGCCA
1 CCAG-AACAGATATTGTGACAGAGCCA
87878987 C
1 C
87878988 TTAACAAAAT
Statistics
Matches: 66, Mismatches: 13, Indels: 5
0.79 0.15 0.06
Matches are distributed among these distances:
26 11 0.17
27 48 0.73
28 7 0.11
ACGTcount: A:0.39, C:0.22, G:0.21, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATATTGTGACAGAGCCA
Found at i:87879193 original size:22 final size:22
Alignment explanation
Indices: 87879145--87879203 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
87879135 GTAAATACGT
*
87879145 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
87879167 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
87879189 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
87879204 CGATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:87879361 original size:27 final size:26
Alignment explanation
Indices: 87879311--87879393 Score: 103
Period size: 27 Copynumber: 3.1 Consensus size: 26
87879301 TCGATCGGTC
* *
87879311 AACAGATATTGTGACAAAGTCACCAG
1 AACAGATATTGTGGCAAAGCCACCAG
* *
87879337 ATACAGATATTATGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAAAGCCACCAG
*
87879364 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAAAGCCACCAG
87879391 AAC
1 AAC
87879394 GCTTCCTCCA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.39, C:0.22, G:0.20, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAAAGCCACCAG
Found at i:87879755 original size:81 final size:81
Alignment explanation
Indices: 87879634--87879910 Score: 396
Period size: 81 Copynumber: 3.4 Consensus size: 81
87879624 TACCCCACAA
* * *
87879634 GGGTATCTCGGTAA-TTTACCCTACAGGGGTATTTCAGTAATTTTACCCTATAGGGGTATTTCGA
1 GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTACCCTATAGGGGTATTTCGA
87879698 TAATTCTACCTTACAG
66 TAATTCTACCTTACAG
*
87879714 GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTCTACCCTATAGGGGTATTTCGA
1 GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTACCCTATAGGGGTATTTCGA
* *
87879779 TAATTTTACCTTGCAG
66 TAATTCTACCTTACAG
* *
87879795 GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTACCCTACAGGGGTATTTCGG
1 GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTACCCTATAGGGGTATTTCGA
* ** *
87879860 TATTTCTACCCCACAA
66 TAATTCTACCTTACAG
* * *
87879876 GGGTATTTCGGT-ATTTCTACCTTACAAGGGTATTT
1 GGGTATTTCAGTAATTT-TACCCTACAGGGGTATTT
87879911 CGGTAATGCT
Statistics
Matches: 177, Mismatches: 18, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
80 16 0.09
81 161 0.91
ACGTcount: A:0.24, C:0.18, G:0.20, T:0.38
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACCCTACAGGGGTATTTTAGTAATTTTACCCTATAGGGGTATTTCGA
TAATTCTACCTTACAG
Found at i:87879928 original size:27 final size:27
Alignment explanation
Indices: 87879616--87879917 Score: 358
Period size: 27 Copynumber: 11.2 Consensus size: 27
87879606 GGGGTAAAAT
* * *
87879616 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAGGGGTATTTC
87879643 GGTAA-TTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
87879669 AGTAATTTTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
87879696 GATAATTCTACCTTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
87879723 AGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
87879750 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* * *
87879777 GATAATTTTACCTTGCAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
87879804 AGTAATTTTACCCTACAGGGGTATTTT
1 GGTAATTTTACCCTACAGGGGTATTTC
*
87879831 AGTAATTTTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAGGGGTATTTC
* *
87879858 GGT-ATTTCTACCCCACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
* *
87879885 GGT-ATTTCTACCTTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAGGGGTATTTC
87879912 GGTAAT
1 GGTAAT
87879918 GCTAGCCTAC
Statistics
Matches: 237, Mismatches: 35, Indels: 5
0.86 0.13 0.02
Matches are distributed among these distances:
26 26 0.11
27 209 0.88
28 2 0.01
ACGTcount: A:0.25, C:0.18, G:0.20, T:0.37
Consensus pattern (27 bp):
GGTAATTTTACCCTACAGGGGTATTTC
Found at i:87887105 original size:39 final size:39
Alignment explanation
Indices: 87887051--87887132 Score: 146
Period size: 39 Copynumber: 2.1 Consensus size: 39
87887041 ATTACCAGCA
*
87887051 CCAGCACGAAGCCTGCGGGTCTTTAGCCCGGACACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
*
87887090 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGATACATTT
1 CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
87887129 CCAG
1 CCAG
87887133 TGTCTTGCAT
Statistics
Matches: 41, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 41 1.00
ACGTcount: A:0.22, C:0.33, G:0.26, T:0.20
Consensus pattern (39 bp):
CCAGCACGAAGCCTGCGGGACTTTAGCCCGGACACATTT
Found at i:87887423 original size:164 final size:164
Alignment explanation
Indices: 87887152--87887478 Score: 627
Period size: 164 Copynumber: 2.0 Consensus size: 164
87887142 TATTTATTCA
**
87887152 CATGTTAACACATTTCACATAACATATCACATTAGCAATTCAATTGCTTCATTCGAATATAAGCA
1 CATGTTAACACATTTCACATAACATATCACATTAGCAATTCAATTGCTTCATAAGAATATAAGCA
87887217 CAAAATGTACACCTACCCTTTAACTTTCGGTTCAATAATCATACACAAGGAACACAAAATCTTTT
66 CAAAATGTACACCTACCCTTTAACTTTCGGTTCAATAATCATACACAAGGAACACAAAATCTTTT
87887282 CACTATCCCAGTTTCACTTTTAATAACCATTCGG
131 CACTATCCCAGTTTCACTTTTAATAACCATTCGG
87887316 CATGTTAACACATTTCACATAACATATCACATTAGCAATTCAATTGCTTCATAAGAATATAAGCA
1 CATGTTAACACATTTCACATAACATATCACATTAGCAATTCAATTGCTTCATAAGAATATAAGCA
*
87887381 CAAAATGTACACCTACCCTTTAACTTTTGGTTCAATAATCATACACAAGGAACACAAAATCTTTT
66 CAAAATGTACACCTACCCTTTAACTTTCGGTTCAATAATCATACACAAGGAACACAAAATCTTTT
87887446 CACTATCCCAGTTTCACTTTTAATAACCATTCG
131 CACTATCCCAGTTTCACTTTTAATAACCATTCG
87887479 ACTATATGCC
Statistics
Matches: 160, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
164 160 1.00
ACGTcount: A:0.37, C:0.24, G:0.08, T:0.32
Consensus pattern (164 bp):
CATGTTAACACATTTCACATAACATATCACATTAGCAATTCAATTGCTTCATAAGAATATAAGCA
CAAAATGTACACCTACCCTTTAACTTTCGGTTCAATAATCATACACAAGGAACACAAAATCTTTT
CACTATCCCAGTTTCACTTTTAATAACCATTCGG
Found at i:87888034 original size:118 final size:119
Alignment explanation
Indices: 87887817--87888053 Score: 442
Period size: 118 Copynumber: 2.0 Consensus size: 119
87887807 TATCATATTA
*
87887817 TATAATCTTAAGCGCGCAACAAATCAAATTTAATTACTTAAGGACTTACCTCATACAACGATAAT
1 TATAATCTTAAGCGCGCAACAAATCAAATTTAATTACTTAAGGACTTACCTCAGACAACGATAAT
87887882 CGAAACGAGACGACTAATCGACACTTTGATTTT-CCCCCGATCCAAATCCGAAT
66 CGAAACGAGACGACTAATCGACACTTTGATTTTCCCCCCGATCCAAATCCGAAT
87887935 TATAATCTTAAGCGCGCAACAAATCAAATTTAATTACTTAAGGACTTACCTCAGACAACGATAAT
1 TATAATCTTAAGCGCGCAACAAATCAAATTTAATTACTTAAGGACTTACCTCAGACAACGATAAT
87888000 CGAAACGAGACGACTAATCGACCACTTTGA-TTTCCCCCCGATCCAAATCCGAAT
66 CGAAACGAGACGACTAATCGA-CACTTTGATTTTCCCCCCGATCCAAATCCGAAT
87888054 CCCACTTTTG
Statistics
Matches: 116, Mismatches: 1, Indels: 3
0.97 0.01 0.03
Matches are distributed among these distances:
118 88 0.76
119 28 0.24
ACGTcount: A:0.37, C:0.25, G:0.12, T:0.25
Consensus pattern (119 bp):
TATAATCTTAAGCGCGCAACAAATCAAATTTAATTACTTAAGGACTTACCTCAGACAACGATAAT
CGAAACGAGACGACTAATCGACACTTTGATTTTCCCCCCGATCCAAATCCGAAT
Found at i:87890841 original size:48 final size:48
Alignment explanation
Indices: 87890770--87890989 Score: 271
Period size: 48 Copynumber: 4.6 Consensus size: 48
87890760 GTCTTAGAAT
* * *
87890770 GATGCCATGTCCCAGACATGGTCTTACACGAAATCACATATTGGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCC
* * * * ** *
87890818 GATGCCATGTTCCAGACATGGTCTTTCACTAGCTCACACGTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCC
* *
87890866 GATGCCATGTCCCAGACATGGTCTTACACTAGCA-CACATATCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACGAG-ATCACATATCGATGCC
* * * *
87890914 GATGCCATGTCCCAGACATGGTCTTATATGAGATCTCATCTCGATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCC
*
87890962 AATGCCATGTCCCAGACATGGTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
87890990 TGGGATCTCA
Statistics
Matches: 145, Mismatches: 25, Indels: 4
0.83 0.14 0.02
Matches are distributed among these distances:
47 1 0.01
48 144 0.99
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.25
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGCC
Found at i:87894504 original size:55 final size:53
Alignment explanation
Indices: 87894411--87894606 Score: 208
Period size: 53 Copynumber: 3.7 Consensus size: 53
87894401 GTAAGGTTTC
*
87894411 TAAGGCAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTA
1 TAAGGCAAAGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTT-C-A
* * * *
87894466 TAAGGCAAATG-TCCCATGTAAGACCATG-CTAAGGCATGGCATTGGTGAGTTCA
1 TAAGGCAAA-GATACCATGTAAGACCATGTC-AAGACATGGCATTGATAAGTTCA
* * *
87894519 TAAGGCAAAGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTT--
1 TAAGGCAAAGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
* *
87894570 TCAA---AAGGATACCATGTAAGACCATGACAAGACATGG
1 T-AAGGCAAAGATACCATGTAAGACCATGTCAAGACATGG
87894607 TAGTGGTAAG
Statistics
Matches: 123, Mismatches: 13, Indels: 16
0.81 0.09 0.11
Matches are distributed among these distances:
49 30 0.24
51 1 0.01
52 3 0.02
53 43 0.35
54 3 0.02
55 42 0.34
56 1 0.01
ACGTcount: A:0.37, C:0.17, G:0.24, T:0.22
Consensus pattern (53 bp):
TAAGGCAAAGATACCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTCA
Found at i:87894829 original size:16 final size:16
Alignment explanation
Indices: 87894808--87894838 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
87894798 ATAAATTTGA
87894808 TTAAGTAAGTAAGTAT
1 TTAAGTAAGTAAGTAT
*
87894824 TTAAGTAAGTGAGTA
1 TTAAGTAAGTAAGTA
87894839 AGTGAAGAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.23, T:0.35
Consensus pattern (16 bp):
TTAAGTAAGTAAGTAT
Found at i:87898561 original size:23 final size:24
Alignment explanation
Indices: 87898531--87898589 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 24
87898521 GATCTGATGG
87898531 ACAGTAAGCTCT-ATTGAGCT-AAA
1 ACAGTAAGCTCTGA-TGAGCTGAAA
*
87898554 ACAGTAAGCTCTGATGAGCTGAGA
1 ACAGTAAGCTCTGATGAGCTGAAA
*
87898578 ACAATAAGCTCT
1 ACAGTAAGCTCT
87898590 TACGAACTGA
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
23 18 0.56
24 14 0.44
ACGTcount: A:0.37, C:0.19, G:0.20, T:0.24
Consensus pattern (24 bp):
ACAGTAAGCTCTGATGAGCTGAAA
Found at i:87898599 original size:24 final size:24
Alignment explanation
Indices: 87898553--87898599 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
87898543 ATTGAGCTAA
* * *
87898553 AACAGTAAGCTCTGATGAGCTGAG
1 AACAATAAGCTCTGACGAACTGAG
*
87898577 AACAATAAGCTCTTACGAACTGA
1 AACAATAAGCTCTGACGAACTGA
87898600 CATATCGGTA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 19 1.00
ACGTcount: A:0.38, C:0.19, G:0.21, T:0.21
Consensus pattern (24 bp):
AACAATAAGCTCTGACGAACTGAG
Found at i:87899889 original size:32 final size:32
Alignment explanation
Indices: 87899843--87899906 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
87899833 TGAAACCATT
*
87899843 GTTCTGATTTGACTAAAAACGGGTTGTTACAA
1 GTTCCGATTTGACTAAAAACGGGTTGTTACAA
*
87899875 GTTCCGATTTGACTAAAAATGGGTTGTTACAA
1 GTTCCGATTTGACTAAAAACGGGTTGTTACAA
87899907 CTCTCTCCCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.31, C:0.12, G:0.22, T:0.34
Consensus pattern (32 bp):
GTTCCGATTTGACTAAAAACGGGTTGTTACAA
Found at i:87912349 original size:40 final size:41
Alignment explanation
Indices: 87912294--87912391 Score: 119
Period size: 40 Copynumber: 2.4 Consensus size: 41
87912284 CGAAAGTGTT
* *
87912294 TGGCACTAAGTGTGCGATTTAATAAAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCGATTTAACAAAGCTTCGACTACATAA
* ** * *
87912334 TGGCACTAAGTGTGCGAATTGGCATAGCTTCGACTATATAA
1 TGGCACTAAGTGTGCGATTTAACAAAGCTTCGACTACATAA
87912375 -GGCACTAAGTGTGCGAT
1 TGGCACTAAGTGTGCGAT
87912392 ATAGACTTAG
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
40 47 0.96
41 2 0.04
ACGTcount: A:0.30, C:0.17, G:0.26, T:0.28
Consensus pattern (41 bp):
TGGCACTAAGTGTGCGATTTAACAAAGCTTCGACTACATAA
Found at i:87915580 original size:61 final size:61
Alignment explanation
Indices: 87915485--87915601 Score: 189
Period size: 61 Copynumber: 1.9 Consensus size: 61
87915475 TTGTTTTCCC
* * * *
87915485 GCTGATTTGATGTTGTTACCTTTTGATGAGTTTGATATTATTTTGGGAATGGATTGCTTCT
1 GCTGATTTGATGCTATTACCATTTGATGAGTTTGATATAATTTTGGGAATGGATTGCTTCT
*
87915546 GCTGATTTGATGCTATTACCATTTGATGAGTTTGATATAATTTTGGGTATGGATTG
1 GCTGATTTGATGCTATTACCATTTGATGAGTTTGATATAATTTTGGGAATGGATTG
87915602 GTTAACTTTG
Statistics
Matches: 51, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
61 51 1.00
ACGTcount: A:0.21, C:0.08, G:0.25, T:0.47
Consensus pattern (61 bp):
GCTGATTTGATGCTATTACCATTTGATGAGTTTGATATAATTTTGGGAATGGATTGCTTCT
Found at i:87921133 original size:37 final size:37
Alignment explanation
Indices: 87921000--87921146 Score: 104
Period size: 37 Copynumber: 3.9 Consensus size: 37
87920990 AACAAAACAT
* * *
87921000 ATATTAAAGGTGTCTAAACTA-GAACATATTTAAACAT-
1 ATATTAAAGTTGTCTAAATTATG-ACATAATTAAAC-TC
* * * **
87921037 ATATTTAAGATGTCT-TATGCTATGACATAATTAAAAAC
1 ATATTAAAGTTGTCTAAAT--TATGACATAATTAAACTC
*
87921075 ATTTATTAAA-TATGTCCAAATTATGACATAATTAAACTC
1 A--TATTAAAGT-TGTCTAAATTATGACATAATTAAACTC
* *
87921114 ATATTAAAGTTGTCTAAATTATAACTTAATTAA
1 ATATTAAAGTTGTCTAAATTATGACATAATTAA
87921147 TAGCTTAAAC
Statistics
Matches: 85, Mismatches: 16, Indels: 18
0.71 0.13 0.15
Matches are distributed among these distances:
36 1 0.01
37 40 0.47
38 14 0.16
39 18 0.21
40 10 0.12
41 2 0.02
ACGTcount: A:0.44, C:0.10, G:0.08, T:0.37
Consensus pattern (37 bp):
ATATTAAAGTTGTCTAAATTATGACATAATTAAACTC
Found at i:87930156 original size:40 final size:40
Alignment explanation
Indices: 87930070--87930145 Score: 116
Period size: 40 Copynumber: 1.9 Consensus size: 40
87930060 TATATATATA
* *
87930070 TAGCCGAATCTATCACAAATCGCACACCAAGTGCCACATT
1 TAGCCGAAGCTATCACAAATAGCACACCAAGTGCCACATT
**
87930110 TAGCCGAAGCTATTTCAAATAGCACACCAAGTGCCA
1 TAGCCGAAGCTATCACAAATAGCACACCAAGTGCCA
87930146 TTCTTAGCCG
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
40 32 1.00
ACGTcount: A:0.36, C:0.30, G:0.14, T:0.20
Consensus pattern (40 bp):
TAGCCGAAGCTATCACAAATAGCACACCAAGTGCCACATT
Found at i:87931465 original size:42 final size:43
Alignment explanation
Indices: 87931407--87931500 Score: 111
Period size: 42 Copynumber: 2.2 Consensus size: 43
87931397 TCCAAACTTT
* *
87931407 TTGAGTGGTCCAAGTTCGTGA-GATATGTG-GCATCCGAGCTCG
1 TTGAGTGGTCCAAGTTCATGATG-GATGTGAGCATCCGAGCTCG
* * * *
87931449 TTGAATGGTCCGAGTTCATTATGGATGTGAGCATTCGAGCTCG
1 TTGAGTGGTCCAAGTTCATGATGGATGTGAGCATCCGAGCTCG
87931492 TTGAGTGGT
1 TTGAGTGGT
87931501 TTGAGTTCAT
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 22 0.51
43 21 0.49
ACGTcount: A:0.19, C:0.16, G:0.33, T:0.32
Consensus pattern (43 bp):
TTGAGTGGTCCAAGTTCATGATGGATGTGAGCATCCGAGCTCG
Found at i:87931507 original size:43 final size:42
Alignment explanation
Indices: 87931431--87931511 Score: 117
Period size: 43 Copynumber: 1.9 Consensus size: 42
87931421 TTCGTGAGAT
87931431 ATGTGGCATCCGAGCTCGTTGAATGGTCCGAGTTCATTATGG
1 ATGTGGCATCCGAGCTCGTTGAATGGTCCGAGTTCATTATGG
* * **
87931473 ATGTGAGCATTCGAGCTCGTTGAGTGGTTTGAGTTCATT
1 ATGTG-GCATCCGAGCTCGTTGAATGGTCCGAGTTCATT
87931512 GTAGATGCGA
Statistics
Matches: 34, Mismatches: 4, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
42 5 0.15
43 29 0.85
ACGTcount: A:0.19, C:0.16, G:0.31, T:0.35
Consensus pattern (42 bp):
ATGTGGCATCCGAGCTCGTTGAATGGTCCGAGTTCATTATGG
Found at i:87935337 original size:42 final size:43
Alignment explanation
Indices: 87935256--87935358 Score: 136
Period size: 42 Copynumber: 2.4 Consensus size: 43
87935246 TCCCAGACTT
* * *
87935256 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGAAAG
1 GGTCTTACATGAAATCAAATATCGATGCCAATGTACCAGAAAG
* *
87935299 GGTCTTACATGAAATCAAATA-CGATGCCAATGTACCAGACAT
1 GGTCTTACATGAAATCAAATATCGATGCCAATGTACCAGAAAG
*
87935341 GGTCTTACACGTAAATCA
1 GGTCTTACATG-AAATCA
87935359 TAAATTGATG
Statistics
Matches: 53, Mismatches: 6, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
42 27 0.51
43 26 0.49
ACGTcount: A:0.35, C:0.22, G:0.17, T:0.25
Consensus pattern (43 bp):
GGTCTTACATGAAATCAAATATCGATGCCAATGTACCAGAAAG
Found at i:87935357 original size:43 final size:44
Alignment explanation
Indices: 87935248--87935358 Score: 147
Period size: 43 Copynumber: 2.6 Consensus size: 44
87935238 TGCGAACGTC
* * *
87935248 CCAGACTTGGTCTTACATGT-AATCAAATATCGATGCCACTGTC
1 CCAGACATGGTCTTACATGTAAATCAAATATCGATGCCAATGTA
* *
87935291 CCAGAAAGGGTCTTACATG-AAATCAAATA-CGATGCCAATGTA
1 CCAGACATGGTCTTACATGTAAATCAAATATCGATGCCAATGTA
*
87935333 CCAGACATGGTCTTACACGTAAATCA
1 CCAGACATGGTCTTACATGTAAATCA
87935359 TAAATTGATG
Statistics
Matches: 58, Mismatches: 8, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
42 27 0.47
43 31 0.53
ACGTcount: A:0.34, C:0.23, G:0.17, T:0.25
Consensus pattern (44 bp):
CCAGACATGGTCTTACATGTAAATCAAATATCGATGCCAATGTA
Found at i:87936864 original size:21 final size:22
Alignment explanation
Indices: 87936833--87936873 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
87936823 TATGTTTTAG
87936833 TATGTCTTTGAGTTATGAATGT
1 TATGTCTTTGAGTTATGAATGT
* *
87936855 TATGT-TTTGATTTGTGAAT
1 TATGTCTTTGAGTTATGAAT
87936874 TATGAATAAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.22, C:0.02, G:0.22, T:0.54
Consensus pattern (22 bp):
TATGTCTTTGAGTTATGAATGT
Found at i:87940892 original size:27 final size:27
Alignment explanation
Indices: 87940847--87941027 Score: 213
Period size: 27 Copynumber: 6.7 Consensus size: 27
87940837 TTAGTTTACC
*
87940847 AAATTACC-AAATACCCCTGGTATGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
87940873 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* *
87940900 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
87940927 AAATTACCAAAATACCCTTGATCAGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
87940954 AAATTACCAAAATACCACTAGTTTGTG
1 AAATTACCAAAATACCCCTGGTTTGTA
* * **
87940981 AAATTACCGAAATA-TCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-GGTTTGTA
87941008 AAATTACCAAAATACCCCTG
1 AAATTACCAAAATACCCCTG
87941028 ATTTACAAAG
Statistics
Matches: 128, Mismatches: 24, Indels: 5
0.82 0.15 0.03
Matches are distributed among these distances:
26 10 0.08
27 115 0.90
28 3 0.02
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:87940959 original size:81 final size:81
Alignment explanation
Indices: 87940847--87941029 Score: 246
Period size: 81 Copynumber: 2.3 Consensus size: 81
87940837 TTAGTTTACC
* * * *
87940847 AAATTACC-AAATACCCCTGGTATGTAAAATTACCAAAATACCCCTGGTTTGTAAAATTATCAAA
1 AAATTACCAAAATACCCCTGATATGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCAAA
*
87940911 ATACCC-CTAGTTTGTA
66 ATACCCTC-AATTTGTA
* * *
87940927 AAATTACCAAAATACCCTTGATCA-GTAAAATTACCAAAATACCACTAGTTTGTGAAATTACCGA
1 AAATTACCAAAATACCCCTGAT-ATGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCAA
*
87940991 AATATCCTCAATTTGTA
65 AATACCCTCAATTTGTA
87941008 AAATTACCAAAATACCCCTGAT
1 AAATTACCAAAATACCCCTGAT
87941030 TTACAAAGTT
Statistics
Matches: 90, Mismatches: 10, Indels: 5
0.86 0.10 0.05
Matches are distributed among these distances:
80 8 0.09
81 80 0.89
82 2 0.02
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (81 bp):
AAATTACCAAAATACCCCTGATATGTAAAATTACCAAAATACCACTAGTTTGTAAAATTACCAAA
ATACCCTCAATTTGTA
Found at i:87941041 original size:27 final size:25
Alignment explanation
Indices: 87940847--87941050 Score: 135
Period size: 27 Copynumber: 7.6 Consensus size: 25
87940837 TTAGTTTACC
*
87940847 AAATTACC-AAATACCCCTGGTATGTA
1 AAATTACCAAAATACCCCT-G-ATTTA
*
87940873 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCT-GATT-TA
* *
87940900 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCT-GATT-TA
* *
87940927 AAATTACCAAAATACCCTTGATCAGTA
1 AAATTACCAAAATACCCCTGAT--TTA
* * *
87940954 AAATTACCAAAATACCACTAGTTTGTG
1 AAATTACCAAAATACCCCT-GATT-TA
* * *
87940981 AAATTACCGAAATA-TCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-GA-TT-TA
87941008 AAATTACCAAAATACCCCTGATTTA
1 AAATTACCAAAATACCCCTGATTTA
87941033 CAAAGTTA-CAGAAATACC
1 -AAA-TTACCA-AAATACC
87941051 TTTGACTTTC
Statistics
Matches: 144, Mismatches: 23, Indels: 21
0.77 0.12 0.11
Matches are distributed among these distances:
25 2 0.01
26 20 0.14
27 117 0.81
28 5 0.03
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (25 bp):
AAATTACCAAAATACCCCTGATTTA
Found at i:87941047 original size:54 final size:52
Alignment explanation
Indices: 87940847--87941050 Score: 155
Period size: 54 Copynumber: 3.8 Consensus size: 52
87940837 TTAGTTTACC
* **
87940847 AAATTACC-AAATACCCCTGGTATGTAAAATTACCA-AAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCCT-G-ATTTAAAATTA-CAGAAATACCCTC-AATTTGTA
* * ** **
87940900 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCA-AAATACCCTTGATCAGTA
1 AAATTACCAAAATACCCCT-GATT-TAAAATTA-CAGAAATACCCTCAATTTGTA
* * * * *
87940954 AAATTACCAAAATACCACTAGTTTGTGAAATTACCGAAATATCCTCAATTTGTA
1 AAATTACCAAAATACCCCT-GATT-TAAAATTACAGAAATACCCTCAATTTGTA
87941008 AAATTACCAAAATACCCCTGATTTACAAAGTTACAGAAATACC
1 AAATTACCAAAATACCCCTGATTTA-AAA-TTACAGAAATACC
87941051 TTTGACTTTC
Statistics
Matches: 123, Mismatches: 22, Indels: 11
0.79 0.14 0.07
Matches are distributed among these distances:
52 1 0.01
53 15 0.12
54 107 0.87
ACGTcount: A:0.42, C:0.21, G:0.09, T:0.28
Consensus pattern (52 bp):
AAATTACCAAAATACCCCTGATTTAAAATTACAGAAATACCCTCAATTTGTA
Found at i:87941120 original size:27 final size:27
Alignment explanation
Indices: 87941092--87941500 Score: 504
Period size: 27 Copynumber: 15.2 Consensus size: 27
87941082 TGGTTTACAA
*
87941092 AATTACTGAAATACCCCTGTAGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
87941119 AATTACCGAAATACTCATGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
87941146 AATTACCGTAATACCCTTGTAGGGTA-
1 AATTACTGAAATACCCCTGTAGGGTAG
*
87941172 AATTA-TCGCAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
87941199 AATTGCCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
87941226 AATTA-TCGAAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
87941253 AATTATTGAAATAACCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
87941280 AATTACCGAAATAACCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
87941307 AATTACTGAAATACCCCTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
87941334 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
87941361 AATTACTGAAATACCCTTATAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
87941388 AATTA-TCGCAATACCCCTGTAGGGTAG
1 AATTACT-GAAATACCCCTGTAGGGTAG
* *
87941415 AATTACCGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
87941442 AATTACTAAAATACCCCTGTAGGGTGG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * * *
87941469 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACTGAAATACCCCTGTAGGGTAG
87941495 AATTAC
1 AATTAC
87941501 CATTTTGCCT
Statistics
Matches: 332, Mismatches: 43, Indels: 15
0.85 0.11 0.04
Matches are distributed among these distances:
26 38 0.11
27 293 0.88
28 1 0.00
ACGTcount: A:0.34, C:0.18, G:0.22, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:87941971 original size:22 final size:22
Alignment explanation
Indices: 87941928--87941992 Score: 69
Period size: 22 Copynumber: 3.0 Consensus size: 22
87941918 TTAAAGCCTT
* * *
87941928 CTGATTATGGCTTTATGTCAAC
1 CTGATTATGGCTATGTGCCAAC
*
87941950 CTGCA-TATGGCTCTGTGCCAAC
1 CTG-ATTATGGCTATGTGCCAAC
*
87941972 TTGATTATGGCTATGTGCCAA
1 CTGATTATGGCTATGTGCCAA
87941993 ACGTATTTAC
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (22 bp):
CTGATTATGGCTATGTGCCAAC
Found at i:87942189 original size:27 final size:27
Alignment explanation
Indices: 87942157--87942258 Score: 120
Period size: 27 Copynumber: 3.8 Consensus size: 27
87942147 TAAGTGGCTT
*
87942157 TGCCAC-ATTATCTGTTTCTGGTGACTA
1 TGCCACAAATATCTG-TTCTGGTGACTA
*
87942184 TGCCACAAATATCTGTTCTGGTGGCTA
1 TGCCACAAATATCTGTTCTGGTGACTA
*
87942211 TGCCACAAATATCTGTAT-TCGGTGACTC
1 TGCCACAAATATCTGT-TCT-GGTGACTA
*
87942239 TGTCAC-AATATCTGTTCTGG
1 TGCCACAAATATCTGTTCTGG
87942259 CAGCAATATG
Statistics
Matches: 66, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
26 3 0.05
27 44 0.67
28 19 0.29
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.36
Consensus pattern (27 bp):
TGCCACAAATATCTGTTCTGGTGACTA
Found at i:87942209 original size:54 final size:54
Alignment explanation
Indices: 87942150--87942258 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
87942140 ATTCTGTTAA
* *
87942150 GTGGCTTTGCCAC-ATTATCTGT-TTCTGGTGACTATGCCACAAATATCTGTTCTG
1 GTGGCTATGCCACAAATATCTGTATTC-GGTGACTATGCCAC-AATATCTGTTCTG
* *
87942204 GTGGCTATGCCACAAATATCTGTATTCGGTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTATGCCACAAATATCTGTATTCGGTGACTATGCCACAATATCTGTTCTG
87942258 G
1 G
87942259 CAGCAATATG
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
54 26 0.53
55 20 0.41
56 3 0.06
ACGTcount: A:0.20, C:0.22, G:0.21, T:0.37
Consensus pattern (54 bp):
GTGGCTATGCCACAAATATCTGTATTCGGTGACTATGCCACAATATCTGTTCTG
Found at i:87942418 original size:31 final size:31
Alignment explanation
Indices: 87942372--87942507 Score: 143
Period size: 31 Copynumber: 4.4 Consensus size: 31
87942362 TTGCATTCAC
* *
87942372 ATTCTGATTTTTGATTCTGTTACCTGGTATTG
1 ATTCTGA-TTCTGATTCTGTTACCTGATATTG
* *
87942404 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTTACCTGATATTG
* *
87942435 ATTCTGATTCTGATTCTGTCACCTAAT-TCTG
1 ATTCTGATTCTGATTCTGTTACCTGATAT-TG
*
87942466 ATTCTGATTCTGATTCTAGTT--CTGATAATG
1 ATTCTGATTCTGATTCT-GTTACCTGATATTG
* *
87942496 TTTCTTATTCTG
1 ATTCTGATTCTG
87942508 TAATGGGTTA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
30 16 0.18
31 65 0.72
32 9 0.10
ACGTcount: A:0.18, C:0.16, G:0.15, T:0.50
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTTACCTGATATTG
Found at i:87942435 original size:6 final size:6
Alignment explanation
Indices: 87942402--87942491 Score: 78
Period size: 6 Copynumber: 14.7 Consensus size: 6
87942392 TACCTGGTAT
* *
87942402 TGATTC TGATTT TGATTC TG-TTACC TGATAC TGATTC TGATTC TGATTC
1 TGATTC TGATTC TGATTC TGATT--C TGATTC TGATTC TGATTC TGATTC
* *
87942451 TG-TCACC TAATTC TGATTC TGATTC TGATTC T-AGTTC TGAT
1 TGAT--TC TGATTC TGATTC TGATTC TGATTC TGA-TTC TGAT
87942492 AATGTTTCTT
Statistics
Matches: 68, Mismatches: 8, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
5 4 0.06
6 56 0.82
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.16, T:0.48
Consensus pattern (6 bp):
TGATTC
Found at i:87963742 original size:14 final size:15
Alignment explanation
Indices: 87963723--87963755 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
87963713 AATTGAGAGC
87963723 AAAAGAAT-AAAAAG
1 AAAAGAATGAAAAAG
*
87963737 AAAAGAGTGAAAAAG
1 AAAAGAATGAAAAAG
87963752 AAAA
1 AAAA
87963756 AGAAAAGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 7 0.41
15 10 0.59
ACGTcount: A:0.76, C:0.00, G:0.18, T:0.06
Consensus pattern (15 bp):
AAAAGAATGAAAAAG
Found at i:87963743 original size:22 final size:21
Alignment explanation
Indices: 87963718--87963763 Score: 56
Period size: 21 Copynumber: 2.1 Consensus size: 21
87963708 TGAAAAATTG
*
87963718 AGAGCAAAAGAATAAAAAGAAA
1 AGAGCAAAA-AAGAAAAAGAAA
**
87963740 AGAGTGAAAAAGAAAAAGAAA
1 AGAGCAAAAAAGAAAAAGAAA
87963761 AGA
1 AGA
87963764 AAATTAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.72, C:0.02, G:0.22, T:0.04
Consensus pattern (21 bp):
AGAGCAAAAAAGAAAAAGAAA
Found at i:87966760 original size:27 final size:26
Alignment explanation
Indices: 87966716--87966766 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
87966706 CTCGCTGCAA
*
87966716 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
87966743 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
87966767 AGCAACCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:87972054 original size:15 final size:15
Alignment explanation
Indices: 87972034--87972073 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
87972024 GATATGGTAT
87972034 CTTGGATTTCTGTAC
1 CTTGGATTTCTGTAC
* * *
87972049 CTTGGATATCTTTAT
1 CTTGGATTTCTGTAC
87972064 CTTGGATTTC
1 CTTGGATTTC
87972074 ACTGTCATGA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
15 21 1.00
ACGTcount: A:0.15, C:0.17, G:0.17, T:0.50
Consensus pattern (15 bp):
CTTGGATTTCTGTAC
Found at i:87974527 original size:29 final size:29
Alignment explanation
Indices: 87974493--87974552 Score: 111
Period size: 29 Copynumber: 2.1 Consensus size: 29
87974483 CAAGATTCGG
87974493 ACTTAGAATGAGATTGAACAAGGTTAAGC
1 ACTTAGAATGAGATTGAACAAGGTTAAGC
*
87974522 ACTTAGAATGAGATTGAACATGGTTAAGC
1 ACTTAGAATGAGATTGAACAAGGTTAAGC
87974551 AC
1 AC
87974553 AAACTCGAAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.40, C:0.12, G:0.23, T:0.25
Consensus pattern (29 bp):
ACTTAGAATGAGATTGAACAAGGTTAAGC
Found at i:87979465 original size:16 final size:16
Alignment explanation
Indices: 87979444--87979486 Score: 59
Period size: 16 Copynumber: 2.7 Consensus size: 16
87979434 GTAGCCAAAC
87979444 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
* *
87979460 TTTCGGCTTTCCGGCA
1 TTTCGGCTTTTCAGCA
*
87979476 TTTCAGCTTTT
1 TTTCGGCTTTT
87979487 GCCAATCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.09, C:0.26, G:0.19, T:0.47
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:87988117 original size:46 final size:46
Alignment explanation
Indices: 87988049--87988221 Score: 274
Period size: 46 Copynumber: 3.8 Consensus size: 46
87988039 TATATATACA
* * * *
87988049 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCCTATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
87988095 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
* *
87988141 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTTATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
87988187 CCTCTCATACACATTTCGCATTAGCCATTCGGCTT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTT
87988222 CGCCACATAT
Statistics
Matches: 119, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
46 119 1.00
ACGTcount: A:0.22, C:0.33, G:0.10, T:0.35
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:87988276 original size:47 final size:47
Alignment explanation
Indices: 87988245--87988391 Score: 249
Period size: 47 Copynumber: 3.1 Consensus size: 47
87988235 CACTTCCACG
**
87988245 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
** *
87988292 TTCATCACATTAACCATTCGGCCTTATCACATATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
87988339 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
87988386 TTCATC
1 TTCATC
87988392 TCATAAAATC
Statistics
Matches: 92, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 92 1.00
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:87988313 original size:94 final size:94
Alignment explanation
Indices: 87988205--87988391 Score: 261
Period size: 94 Copynumber: 2.0 Consensus size: 94
87988195 ACACATTTCG
* * * *
87988205 CATTAGCCATTCGG-CTTCGCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTACC
1 CATTAACCATTCGGCCTT-ACCACATATATACA-TGTCCACATTCATCACATTGGCCATTCGACC
87988268 TTATCACATATATGCATGTTCACATTCATCA
64 TTATCACATATATGCATGTTCACATTCATCA
* ** * *
87988299 CATTAACCATTCGGCCTTATCACATATATGTATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAACCATTCGGCCTTACCACATATATACATGTCCACATTCATCACATTGGCCATTCGACCTT
87988364 ATCACATATATGCATGTTCACATTCATC
66 ATCACATATATGCATGTTCACATTCATC
87988392 TCATAAAATC
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
93 1 0.01
94 78 0.95
95 3 0.04
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CATTAACCATTCGGCCTTACCACATATATACATGTCCACATTCATCACATTGGCCATTCGACCTT
ATCACATATATGCATGTTCACATTCATCA
Found at i:87988747 original size:71 final size:71
Alignment explanation
Indices: 87988660--87988792 Score: 266
Period size: 71 Copynumber: 1.9 Consensus size: 71
87988650 AATTCACATA
87988660 TAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACATAACCACAAATGTA
1 TAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACATAACCACAAATGTA
87988725 TGGGTT
66 TGGGTT
87988731 TAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACATAACCACAAAT
1 TAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACATAACCACAAAT
87988793 TCTCTACAAG
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
71 62 1.00
ACGTcount: A:0.41, C:0.18, G:0.11, T:0.30
Consensus pattern (71 bp):
TAATCAATAGCTTATGAGCAACTAAAACAAGTTTTATCCATGTTTACAACATAACCACAAATGTA
TGGGTT
Found at i:87991836 original size:25 final size:25
Alignment explanation
Indices: 87991802--87991856 Score: 85
Period size: 25 Copynumber: 2.2 Consensus size: 25
87991792 CGGTTAAAGA
87991802 ATTCGCACACACAGTGCCTCA-ATTC
1 ATTCGCACACACAGTGCCT-ATATTC
*
87991827 ATTCGCACACATAGTGCCTATATTC
1 ATTCGCACACACAGTGCCTATATTC
87991852 ATTCG
1 ATTCG
87991857 TTATTACACA
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
24 1 0.04
25 27 0.96
ACGTcount: A:0.27, C:0.31, G:0.13, T:0.29
Consensus pattern (25 bp):
ATTCGCACACACAGTGCCTATATTC
Found at i:87992086 original size:40 final size:40
Alignment explanation
Indices: 87992016--87992352 Score: 593
Period size: 40 Copynumber: 8.4 Consensus size: 40
87992006 GCCTGATTAC
** * **
87992016 ACATCACCGGCACGAATGCCCTTCAAGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
** * *
87992056 GTAACACCAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
87992096 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
87992136 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
87992176 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
87992216 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
87992256 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
87992296 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
1 ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
87992336 ACATCACTAGCACGAAT
1 ACATCACTAGCACGAAT
87992353 AACACCAGCA
Statistics
Matches: 286, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
40 286 1.00
ACGTcount: A:0.26, C:0.31, G:0.22, T:0.21
Consensus pattern (40 bp):
ACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGAT
Found at i:87992388 original size:55 final size:55
Alignment explanation
Indices: 87992304--87992407 Score: 190
Period size: 55 Copynumber: 1.9 Consensus size: 55
87992294 ATACATCACT
* *
87992304 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATAACACC
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATAACACC
87992359 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAAT
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAAT
87992408 GCTCTTCGGG
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 47 1.00
ACGTcount: A:0.31, C:0.31, G:0.20, T:0.18
Consensus pattern (55 bp):
AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATAACACC
Found at i:87992420 original size:40 final size:40
Alignment explanation
Indices: 87992359--87992551 Score: 341
Period size: 40 Copynumber: 4.8 Consensus size: 40
87992349 GAATAACACC
* *
87992359 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
87992399 AGCACGAATGCTCTTCGGGACTTAGCCCGGATATATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
87992439 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
87992479 AGTACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
*
87992519 AGCACGAATGCTCTTCGGGACTTAGACCGGATA
1 AGCACGAATGCTCTTCGGGACTTAGCCCGGATA
87992552 TATATAACTC
Statistics
Matches: 146, Mismatches: 7, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.26, C:0.28, G:0.23, T:0.23
Consensus pattern (40 bp):
AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACT
Found at i:87992427 original size:95 final size:95
Alignment explanation
Indices: 87992264--87992447 Score: 341
Period size: 95 Copynumber: 1.9 Consensus size: 95
87992254 ATACATCACT
* *
87992264 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
87992329 CCCGGATACATCACTAGCACGAATAACACC
66 CCCGGATACATCACTAGCACGAATAACACC
87992359 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
*
87992424 CCCGGATATATCACTAGCACGAAT
66 CCCGGATACATCACTAGCACGAAT
87992448 GCTCTTCGGG
Statistics
Matches: 86, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
95 86 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (95 bp):
AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
CCCGGATACATCACTAGCACGAATAACACC
Found at i:87992475 original size:175 final size:175
Alignment explanation
Indices: 87992184--87992527 Score: 652
Period size: 175 Copynumber: 2.0 Consensus size: 175
87992174 ATACATCACT
* *
87992184 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
87992249 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
66 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
87992314 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATAACACC
131 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATAACACC
87992359 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
* *
87992424 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGTACGAATG
66 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
87992489 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAAT
131 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAAT
87992528 GCTCTTCGGG
Statistics
Matches: 165, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
175 165 1.00
ACGTcount: A:0.27, C:0.30, G:0.22, T:0.22
Consensus pattern (175 bp):
AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATAACACC
Found at i:87992515 original size:215 final size:215
Alignment explanation
Indices: 87992144--87992551 Score: 771
Period size: 215 Copynumber: 1.9 Consensus size: 215
87992134 ATACATCACT
* *
87992144 AGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
87992209 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
66 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
87992274 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
131 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGACCGGATACA
87992339 TCACTAGCACGAATAACACC
196 TCACTAGCACGAATAACACC
87992359 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
1 AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
* *
87992424 CCCGGATATATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGTACGAATG
66 CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
87992489 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGACCGGATA
131 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGACCGGATA
87992552 TATATAACTC
Statistics
Matches: 188, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
215 188 1.00
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.22
Consensus pattern (215 bp):
AGCACGAATGCTCTCCAGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAG
CCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGGGACTTAGACCGGATACA
TCACTAGCACGAATAACACC
Found at i:87994211 original size:46 final size:46
Alignment explanation
Indices: 87994029--87994201 Score: 265
Period size: 46 Copynumber: 3.8 Consensus size: 46
87994019 TATATATACA
** * *
87994029 CATCTCATACATATCTCACATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
*
87994075 CATCTCATACACGTTTCGCATTAGCCATTCGACTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
87994121 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
* * * *
87994167 CCTCTCATACACATTCCGCATTAGCCATTCAGCTT
1 CATCTCATACACGTTTCGCATTAGCCATTCGGCTT
87994202 CGCCACATAT
Statistics
Matches: 117, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
46 117 1.00
ACGTcount: A:0.24, C:0.34, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
Found at i:87994256 original size:47 final size:47
Alignment explanation
Indices: 87994225--87994371 Score: 258
Period size: 47 Copynumber: 3.1 Consensus size: 47
87994215 CACTTCCACG
**
87994225 TTCATCACATTGGCCATTCTACCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
* *
87994272 TTCATCACATTAGCCATTCGGCCTTATCACATATATGTATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
87994319 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
1 TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
87994366 TTCATC
1 TTCATC
87994372 TCATAAAATC
Statistics
Matches: 94, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 94 1.00
ACGTcount: A:0.27, C:0.27, G:0.10, T:0.36
Consensus pattern (47 bp):
TTCATCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACA
Found at i:87994290 original size:94 final size:94
Alignment explanation
Indices: 87994185--87994371 Score: 261
Period size: 94 Copynumber: 2.0 Consensus size: 94
87994175 ACACATTCCG
* * *
87994185 CATTAGCCATTCAG-CTTCGCCACATATATACACT-TCCACGTTCATCACATTGGCCATTCTACC
1 CATTAGCCATTCAGCCTT-ACCACATATATACA-TGTCCACATTCATCACATTGGCCATTCGACC
87994248 TTATCACATATATGCATGTTCACATTCATCA
64 TTATCACATATATGCATGTTCACATTCATCA
* * ** * *
87994279 CATTAGCCATTCGGCCTTATCACATATATGTATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTAGCCATTCAGCCTTACCACATATATACATGTCCACATTCATCACATTGGCCATTCGACCTT
87994344 ATCACATATATGCATGTTCACATTCATC
66 ATCACATATATGCATGTTCACATTCATC
87994372 TCATAAAATC
Statistics
Matches: 82, Mismatches: 9, Indels: 4
0.86 0.09 0.04
Matches are distributed among these distances:
93 1 0.01
94 78 0.95
95 3 0.04
ACGTcount: A:0.27, C:0.29, G:0.10, T:0.34
Consensus pattern (94 bp):
CATTAGCCATTCAGCCTTACCACATATATACATGTCCACATTCATCACATTGGCCATTCGACCTT
ATCACATATATGCATGTTCACATTCATCA
Found at i:87995075 original size:70 final size:70
Alignment explanation
Indices: 87994961--87995099 Score: 251
Period size: 70 Copynumber: 2.0 Consensus size: 70
87994951 TATGTTTTCA
* *
87994961 TTTATTTTGTTTGAAACTAGACTCATTAAGGAGTCTAAGTATATAATTTTATCTTATAATCATTT
1 TTTATTTTGTTTGAAACGAGACTCATTAAGGAGTCTAAGCATATAATTTTATCTTATAATCATTT
87995026 TTTTG
66 TTTTG
*
87995031 TTTATTTTTTTTGAAACGAGACTCATTAAGGAGTCTAAGCATATAATTTTATCTTATAATCATTT
1 TTTATTTTGTTTGAAACGAGACTCATTAAGGAGTCTAAGCATATAATTTTATCTTATAATCATTT
87995096 TTTT
66 TTTT
87995100 ACGATTTATG
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
70 66 1.00
ACGTcount: A:0.30, C:0.09, G:0.11, T:0.50
Consensus pattern (70 bp):
TTTATTTTGTTTGAAACGAGACTCATTAAGGAGTCTAAGCATATAATTTTATCTTATAATCATTT
TTTTG
Found at i:87997000 original size:46 final size:45
Alignment explanation
Indices: 87996950--87997164 Score: 189
Period size: 46 Copynumber: 4.8 Consensus size: 45
87996940 TGATTGAGCA
*
87996950 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGTGCG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGC-TGCG
* * * *
87996996 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGGCA
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATG---CT--GCG
*
87997043 TCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGC-GAACG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTG--CG
* * *
87997089 TCCGAGGTCGTTGAGTTGAGTCCGAGTTCGCTT-T-GA-AC-GC-
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTGCG
* *
87997129 -CTGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
87997165 GCGGGTTACA
Statistics
Matches: 143, Mismatches: 14, Indels: 29
0.77 0.08 0.16
Matches are distributed among these distances:
39 30 0.21
40 1 0.01
41 2 0.01
43 6 0.04
44 3 0.02
45 4 0.03
46 61 0.43
47 30 0.21
48 2 0.01
50 4 0.03
ACGTcount: A:0.18, C:0.20, G:0.31, T:0.30
Consensus pattern (45 bp):
TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCTGCG
Found at i:87997106 original size:93 final size:93
Alignment explanation
Indices: 87996947--87997118 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
87996937 GGATGATTGA
**
87996947 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGTGCGTCCGAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
87997012 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * **
87997040 GCATCCGAGCTCGTTGAGTTGAGTCTGAGTTCACTTATGGATGCGAACGTCCGAGGTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
87997105 TGAGTCCGAGTTCG
66 TGAGTCCGAGTTCG
87997119 CTTTGAACGC
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 73 1.00
ACGTcount: A:0.19, C:0.20, G:0.31, T:0.29
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:88013568 original size:20 final size:21
Alignment explanation
Indices: 88013545--88013589 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
88013535 TTAATCTCAT
88013545 TTTTCT-ATATTTGTAAATAG
1 TTTTCTAATATTTGTAAATAG
*
88013565 TTTTTTAATATTTGTAAATAG
1 TTTTCTAATATTTGTAAATAG
88013586 TTTT
1 TTTT
88013590 TTAAGCATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (21 bp):
TTTTCTAATATTTGTAAATAG
Found at i:88013575 original size:21 final size:21
Alignment explanation
Indices: 88013551--88013593 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
88013541 TCATTTTTCT
88013551 ATATTTGTAAATAGTTTTTTA
1 ATATTTGTAAATAGTTTTTTA
88013572 ATATTTGTAAATAGTTTTTTA
1 ATATTTGTAAATAGTTTTTTA
88013593 A
1 A
88013594 GCATATCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (21 bp):
ATATTTGTAAATAGTTTTTTA
Found at i:88013836 original size:20 final size:21
Alignment explanation
Indices: 88013813--88013857 Score: 74
Period size: 21 Copynumber: 2.2 Consensus size: 21
88013803 TTAATCTCAT
88013813 TTTTCT-ATATTTGTAAATAG
1 TTTTCTAATATTTGTAAATAG
*
88013833 TTTTTTAATATTTGTAAATAG
1 TTTTCTAATATTTGTAAATAG
88013854 TTTT
1 TTTT
88013858 TTAAGCATAT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 5 0.22
21 18 0.78
ACGTcount: A:0.29, C:0.02, G:0.09, T:0.60
Consensus pattern (21 bp):
TTTTCTAATATTTGTAAATAG
Found at i:88013843 original size:21 final size:21
Alignment explanation
Indices: 88013819--88013861 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
88013809 TCATTTTTCT
88013819 ATATTTGTAAATAGTTTTTTA
1 ATATTTGTAAATAGTTTTTTA
88013840 ATATTTGTAAATAGTTTTTTA
1 ATATTTGTAAATAGTTTTTTA
88013861 A
1 A
88013862 GCATATCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.35, C:0.00, G:0.09, T:0.56
Consensus pattern (21 bp):
ATATTTGTAAATAGTTTTTTA
Found at i:88013995 original size:268 final size:268
Alignment explanation
Indices: 88013518--88014053 Score: 1072
Period size: 268 Copynumber: 2.0 Consensus size: 268
88013508 GATGAATATT
88013518 TTATATTTGAAATTTATTTAATCTCATTTTTCTATATTTGTAAATAGTTTTTTAATATTTGTAAA
1 TTATATTTGAAATTTATTTAATCTCATTTTTCTATATTTGTAAATAGTTTTTTAATATTTGTAAA
88013583 TAGTTTTTTAAGCATATCAAATATTTTGAAAAAGTAGCGTTAAATACAAAAGGGTACACCAAAAC
66 TAGTTTTTTAAGCATATCAAATATTTTGAAAAAGTAGCGTTAAATACAAAAGGGTACACCAAAAC
88013648 AGTAGTGCTAATAGAAAAATGATATGTTCGGTACAATATCGACTACCTCAGTTTAAATGCAAAAA
131 AGTAGTGCTAATAGAAAAATGATATGTTCGGTACAATATCGACTACCTCAGTTTAAATGCAAAAA
88013713 ATTCAATCTCCTATCACGCCATTTTTTTCTATATTTTAATTTGAGGTGTTCATGAGTCGGCTTGA
196 ATTCAATCTCCTATCACGCCATTTTTTTCTATATTTTAATTTGAGGTGTTCATGAGTCGGCTTGA
88013778 TCAAGTTC
261 TCAAGTTC
88013786 TTATATTTGAAATTTATTTAATCTCATTTTTCTATATTTGTAAATAGTTTTTTAATATTTGTAAA
1 TTATATTTGAAATTTATTTAATCTCATTTTTCTATATTTGTAAATAGTTTTTTAATATTTGTAAA
88013851 TAGTTTTTTAAGCATATCAAATATTTTGAAAAAGTAGCGTTAAATACAAAAGGGTACACCAAAAC
66 TAGTTTTTTAAGCATATCAAATATTTTGAAAAAGTAGCGTTAAATACAAAAGGGTACACCAAAAC
88013916 AGTAGTGCTAATAGAAAAATGATATGTTCGGTACAATATCGACTACCTCAGTTTAAATGCAAAAA
131 AGTAGTGCTAATAGAAAAATGATATGTTCGGTACAATATCGACTACCTCAGTTTAAATGCAAAAA
88013981 ATTCAATCTCCTATCACGCCATTTTTTTCTATATTTTAATTTGAGGTGTTCATGAGTCGGCTTGA
196 ATTCAATCTCCTATCACGCCATTTTTTTCTATATTTTAATTTGAGGTGTTCATGAGTCGGCTTGA
88014046 TCAAGTTC
261 TCAAGTTC
88014054 GAGCCAAGTC
Statistics
Matches: 268, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
268 268 1.00
ACGTcount: A:0.35, C:0.13, G:0.13, T:0.40
Consensus pattern (268 bp):
TTATATTTGAAATTTATTTAATCTCATTTTTCTATATTTGTAAATAGTTTTTTAATATTTGTAAA
TAGTTTTTTAAGCATATCAAATATTTTGAAAAAGTAGCGTTAAATACAAAAGGGTACACCAAAAC
AGTAGTGCTAATAGAAAAATGATATGTTCGGTACAATATCGACTACCTCAGTTTAAATGCAAAAA
ATTCAATCTCCTATCACGCCATTTTTTTCTATATTTTAATTTGAGGTGTTCATGAGTCGGCTTGA
TCAAGTTC
Found at i:88014934 original size:22 final size:22
Alignment explanation
Indices: 88014909--88014952 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
88014899 CTACTCTATC
88014909 GAGCAAAGTTTTAATAGAGTTT
1 GAGCAAAGTTTTAATAGAGTTT
88014931 GAGCAAAGTTTTAATAGAGTTT
1 GAGCAAAGTTTTAATAGAGTTT
88014953 TTAGACTCCA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.36, C:0.05, G:0.23, T:0.36
Consensus pattern (22 bp):
GAGCAAAGTTTTAATAGAGTTT
Found at i:88017067 original size:54 final size:53
Alignment explanation
Indices: 88016984--88017097 Score: 192
Period size: 54 Copynumber: 2.1 Consensus size: 53
88016974 TAGTATGAAG
* *
88016984 GAAGATGGAACTTTAGAGAACTTAGGGTTCCTCTAGGTTTCTTTATTAAATTCA
1 GAAGATGGAACTTTAGAGAACTTAAGGTTCATCTAGGTTTCTTTATTAAATT-A
88017038 GAAGATGGAACTTTAGAGAACTTAAGGTTCATCTAGGTTTCTTTATTAAATTA
1 GAAGATGGAACTTTAGAGAACTTAAGGTTCATCTAGGTTTCTTTATTAAATTA
*
88017091 AAAGATG
1 GAAGATG
88017098 ATAATAATAA
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
53 7 0.12
54 50 0.88
ACGTcount: A:0.33, C:0.11, G:0.20, T:0.36
Consensus pattern (53 bp):
GAAGATGGAACTTTAGAGAACTTAAGGTTCATCTAGGTTTCTTTATTAAATTA
Found at i:88017106 original size:3 final size:3
Alignment explanation
Indices: 88017098--88017131 Score: 68
Period size: 3 Copynumber: 11.3 Consensus size: 3
88017088 TTAAAAGATG
88017098 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
88017132 AAGTCCTGCA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:88022887 original size:26 final size:28
Alignment explanation
Indices: 88022831--88022887 Score: 91
Period size: 29 Copynumber: 2.1 Consensus size: 28
88022821 TTTTTATTTT
88022831 TCATAATTACATATAAAAATAAAATATTA
1 TCATAATTACATAT-AAAATAAAATATTA
88022860 TCATAATTACATAT-AAA-AAAATATTA
1 TCATAATTACATATAAAATAAAATATTA
88022886 TC
1 TC
88022888 GTTTAATTAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
26 11 0.39
27 3 0.11
29 14 0.50
ACGTcount: A:0.56, C:0.09, G:0.00, T:0.35
Consensus pattern (28 bp):
TCATAATTACATATAAAATAAAATATTA
Found at i:88025360 original size:20 final size:20
Alignment explanation
Indices: 88025335--88025379 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
88025325 TAATTGGTAT
*
88025335 GTATAAAATGTGAGCTCAAC
1 GTATAAAATGTGACCTCAAC
*
88025355 GTATAAAATGTGACCTCAAT
1 GTATAAAATGTGACCTCAAC
88025375 GTATA
1 GTATA
88025380 TGCTATGTGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (20 bp):
GTATAAAATGTGACCTCAAC
Found at i:88027185 original size:16 final size:18
Alignment explanation
Indices: 88027147--88027186 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
88027137 TATTTGAATC
*
88027147 TTTATTCAACTACTATAA
1 TTTATTCAACTACAATAA
88027165 TTTATTCAACT-CAAT-A
1 TTTATTCAACTACAATAA
88027181 TTTATT
1 TTTATT
88027187 TTATATTTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 7 0.33
17 3 0.14
18 11 0.52
ACGTcount: A:0.35, C:0.15, G:0.00, T:0.50
Consensus pattern (18 bp):
TTTATTCAACTACAATAA
Found at i:88027416 original size:55 final size:55
Alignment explanation
Indices: 88027336--88027455 Score: 224
Period size: 55 Copynumber: 2.2 Consensus size: 55
88027326 AATTAATTAC
88027336 ATTATTTAA-TAAATTCGTGATGACTAATTAATTTAATTCACACTTTAGACTTTA
1 ATTATTTAATTAAATTCGTGATGACTAATTAATTTAATTCACACTTTAGACTTTA
*
88027390 ATTATTTAATTAATTTCGTGATGACTAATTAATTTAATTCACACTTTAGACTTTA
1 ATTATTTAATTAAATTCGTGATGACTAATTAATTTAATTCACACTTTAGACTTTA
88027445 ATTATTTAATT
1 ATTATTTAATT
88027456 TTCAAAGTAA
Statistics
Matches: 64, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
54 9 0.14
55 55 0.86
ACGTcount: A:0.36, C:0.10, G:0.07, T:0.47
Consensus pattern (55 bp):
ATTATTTAATTAAATTCGTGATGACTAATTAATTTAATTCACACTTTAGACTTTA
Found at i:88027422 original size:31 final size:31
Alignment explanation
Indices: 88027329--88027423 Score: 75
Period size: 27 Copynumber: 3.3 Consensus size: 31
88027319 AAAATATAAT
88027329 TAATTACATTATTTAA-TAAATTCGTGATGAC
1 TAATTA-ATTATTTAATTAAATTCGTGATGAC
*
88027360 TAATT-A--ATTTAATTCACACTT--T-A-GAC
1 TAATTAATTATTTAATT-A-AATTCGTGATGAC
*
88027386 T--TTAATTATTTAATTAATTTCGTGATGAC
1 TAATTAATTATTTAATTAAATTCGTGATGAC
88027415 TAATTAATT
1 TAATTAATT
88027424 TAATTCACAC
Statistics
Matches: 50, Mismatches: 2, Indels: 24
0.66 0.03 0.32
Matches are distributed among these distances:
24 2 0.04
25 4 0.08
26 5 0.10
27 16 0.32
28 3 0.06
29 6 0.12
30 3 0.06
31 11 0.22
ACGTcount: A:0.37, C:0.09, G:0.07, T:0.46
Consensus pattern (31 bp):
TAATTAATTATTTAATTAAATTCGTGATGAC
Found at i:88027445 original size:24 final size:24
Alignment explanation
Indices: 88027363--88027447 Score: 66
Period size: 27 Copynumber: 3.2 Consensus size: 24
88027353 TGATGACTAA
88027363 TTAATTTAATTCACACTTTAGACT
1 TTAATTTAATTCACACTTTAGACT
*
88027387 TTAATTATTTAATT-A-ATTTCGTGATGACT
1 TT-A--ATTTAATTCACACTT--T-A-GACT
88027416 AATTAATTTAATTCACACTTTAGACT
1 --TTAATTTAATTCACACTTTAGACT
88027442 TTAATT
1 TTAATT
88027448 ATTTAATTTT
Statistics
Matches: 48, Mismatches: 2, Indels: 22
0.67 0.03 0.31
Matches are distributed among these distances:
24 8 0.17
25 4 0.08
26 5 0.10
27 10 0.21
28 10 0.21
29 5 0.10
30 4 0.08
31 2 0.04
ACGTcount: A:0.34, C:0.12, G:0.06, T:0.48
Consensus pattern (24 bp):
TTAATTTAATTCACACTTTAGACT
Found at i:88027474 original size:13 final size:13
Alignment explanation
Indices: 88027456--88027488 Score: 66
Period size: 13 Copynumber: 2.5 Consensus size: 13
88027446 TTATTTAATT
88027456 TTCAAAGTAATAA
1 TTCAAAGTAATAA
88027469 TTCAAAGTAATAA
1 TTCAAAGTAATAA
88027482 TTCAAAG
1 TTCAAAG
88027489 AACTTAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.52, C:0.09, G:0.09, T:0.30
Consensus pattern (13 bp):
TTCAAAGTAATAA
Found at i:88048081 original size:42 final size:42
Alignment explanation
Indices: 88047971--88048082 Score: 131
Period size: 42 Copynumber: 2.7 Consensus size: 42
88047961 TGTGCTATCG
* *
88047971 TGTAAGACCACGTCTGGGATGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGAAGTTGGCATCGTATTTGATTACA
*
88048013 TGTAAGACC-CTGTTTGGGATAG-TGGCATCG-ATATTGATTACA
1 TGTAAGACCAC-GTCTGGGA-AGTTGGCATCGTAT-TTGATTACA
* *
88048055 TGTAAGACCACATCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGAAGTTGGCAT
88048083 TGTACGAGCT
Statistics
Matches: 59, Mismatches: 6, Indels: 10
0.79 0.08 0.13
Matches are distributed among these distances:
41 4 0.07
42 53 0.90
43 2 0.03
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGAAGTTGGCATCGTATTTGATTACA
Found at i:88055629 original size:85 final size:85
Alignment explanation
Indices: 88055473--88055631 Score: 200
Period size: 85 Copynumber: 1.9 Consensus size: 85
88055463 ATATGTGTTA
*
88055473 TCGTGTAAGACCACATCTGGGACGTTGGCATCAACTTATGATTTACATGTAAGACCACGTCTGGG
1 TCGTGTAAGACCACATCTGGGACGTTGGCATCAACTTATGATTTACATGTAAGACCACGTCTGGA
*
88055538 CGTTGGCATCATACTTGATT
66 CATTGGCATCATACTTGATT
***
88055558 TCGTGTAAGACCTTGTCTGGGACAG-TGGCATCGATA-TT-TGA-TTACATGTAAGACCACGTCT
1 TCGTGTAAGACCACATCTGGGAC-GTTGGCATC-A-ACTTATGATTTACATGTAAGACCACGTCT
*
88055619 AGTACATTGGCAT
63 -GGACATTGGCAT
88055632 TGTACGAGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
84 20 0.31
85 39 0.61
86 4 0.06
87 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (85 bp):
TCGTGTAAGACCACATCTGGGACGTTGGCATCAACTTATGATTTACATGTAAGACCACGTCTGGA
CATTGGCATCATACTTGATT
Found at i:88055630 original size:43 final size:42
Alignment explanation
Indices: 88055476--88055631 Score: 163
Period size: 43 Copynumber: 3.7 Consensus size: 42
88055466 TGTGTTATCG
* *
88055476 TGTAAGACCACATCTGGGACGTTGGCATCA-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACATTGGCATCATA-TT-TGA-TTACA
* * * *
88055520 TGTAAGACCACGTCTGGG-CGTTGGCATCATACTTGATTTCG
1 TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
** *
88055561 TGTAAGACCTTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCACGTCTGGGACATTGGCATC-ATATTTGATTACA
* *
88055604 TGTAAGACCACGTCTAGTACATTGGCAT
1 TGTAAGACCACGTCTGGGACATTGGCAT
88055632 TGTACGAGCT
Statistics
Matches: 93, Mismatches: 16, Indels: 7
0.80 0.14 0.06
Matches are distributed among these distances:
41 19 0.20
42 11 0.12
43 45 0.48
44 18 0.19
ACGTcount: A:0.26, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACATTGGCATCATATTTGATTACA
Found at i:88060155 original size:69 final size:69
Alignment explanation
Indices: 88060076--88060217 Score: 275
Period size: 69 Copynumber: 2.1 Consensus size: 69
88060066 AAAGGACATT
*
88060076 TTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATCAAGTCAAAATTTTGTCCATTATCTTT
1 TTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATCAAGTCAAAATTTTGTCCATCATCTTT
88060141 TACC
66 TACC
88060145 TTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATCAAGTCAAAATTTTGTCCATCATCTTT
1 TTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATCAAGTCAAAATTTTGTCCATCATCTTT
88060210 TACC
66 TACC
88060214 TTGG
1 TTGG
88060218 CCGAATTTCA
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 72 1.00
ACGTcount: A:0.39, C:0.12, G:0.15, T:0.33
Consensus pattern (69 bp):
TTGGTCATTTGGTAAATAAAAGAATAAAAAGGGAAAATCAAGTCAAAATTTTGTCCATCATCTTT
TACC
Found at i:88068655 original size:43 final size:42
Alignment explanation
Indices: 88068592--88068703 Score: 113
Period size: 43 Copynumber: 2.6 Consensus size: 42
88068582 TACCATACCA
** * * *
88068592 ATGCCATATCCCATATATGGTCTTACATGAAATCTCGTATC-
1 ATGCCATAAGCCAGATATGGTCTTACAAGAAATCTCATATCG
*
88068633 AGTGCCA-ATAGCCCA-ACTATGGTCTTACAAGAAGTCTCATATCG
1 A-TGCCATA-AG-CCAGA-TATGGTCTTACAAGAAATCTCATATCG
88068677 ATGCCATAAGCCAGATATGGTCTTACA
1 ATGCCATAAGCCAGATATGGTCTTACA
88068704 CGTAATCTTA
Statistics
Matches: 59, Mismatches: 5, Indels: 13
0.77 0.06 0.17
Matches are distributed among these distances:
41 2 0.03
42 21 0.36
43 34 0.58
44 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (42 bp):
ATGCCATAAGCCAGATATGGTCTTACAAGAAATCTCATATCG
Found at i:88075814 original size:43 final size:43
Alignment explanation
Indices: 88075767--88075914 Score: 167
Period size: 43 Copynumber: 3.4 Consensus size: 43
88075757 TGTGTTTATG
*
88075767 TGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTACC
1 TGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTACA
* * ***
88075810 TGTAAGACCATGTTTGGGACATTGGCATCATTATTTGATTTTG
1 TGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTACA
* *
88075853 TGTAAGACCATAG-CTGGG-CTATCGGCATCGA-TATGTGATAACA
1 TGTAAGACCAT-GTCTGGGAC-ATTGGCATC-ATTATGTGATTACA
*
88075896 TGTAAGACCATATCTGGGA
1 TGTAAGACCATGTCTGGGA
88075915 TATGGCAATG
Statistics
Matches: 87, Mismatches: 13, Indels: 9
0.80 0.12 0.08
Matches are distributed among these distances:
42 1 0.01
43 84 0.97
44 2 0.02
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.32
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGACATTGGCATCATTATGTGATTACA
Found at i:88079903 original size:16 final size:16
Alignment explanation
Indices: 88079884--88079914 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
88079874 CTTCTTCACT
88079884 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
88079900 TACTTACTTACTTAA
1 TACTCACTTACTTAA
88079915 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:88079920 original size:20 final size:20
Alignment explanation
Indices: 88079881--88079920 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
88079871 AAACTTCTTC
* *
88079881 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
88079901 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
88079921 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:88080295 original size:55 final size:54
Alignment explanation
Indices: 88080158--88080360 Score: 181
Period size: 55 Copynumber: 3.8 Consensus size: 54
88080148 TTTGAAACTT
*
88080158 ACCATTGCCATGTCTTGACATGG-ACTTACATG-GTATCCTTGCCTTATGAATTC
1 ACCAATGCCATGTCTTGACATGGTA-TTACATGAGTATCCTTGCCTTATGAATTC
* * *
88080211 ACCAATGCCATGCCTTGGCATGGTCTTACATGAG-A-CCTTTGCCTTATAGTAAATT-
1 ACCAATGCCATGTCTTGACATGGTATTACATGAGTATCC-TTGCCTTAT-G--AATTC
* *
88080266 ATCAATGCCATGTCTTGACATGGTATTACATGA-TTTCCTTGCCTTA-GAAAACTT-
1 ACCAATGCCATGTCTTGACATGGTATTACATGAGTATCCTTGCCTTATG--AA-TTC
* * *
88080320 ACCAATTGCCATGCCTTGGCATGGTCTTACATG-GTATCCTT
1 ACCAA-TGCCATGTCTTGACATGGTATTACATGAGTATCCTT
88080361 AAACCCTAAT
Statistics
Matches: 124, Mismatches: 15, Indels: 20
0.78 0.09 0.13
Matches are distributed among these distances:
52 2 0.02
53 41 0.33
54 8 0.06
55 67 0.54
56 6 0.05
ACGTcount: A:0.24, C:0.24, G:0.17, T:0.35
Consensus pattern (54 bp):
ACCAATGCCATGTCTTGACATGGTATTACATGAGTATCCTTGCCTTATGAATTC
Found at i:88084433 original size:17 final size:17
Alignment explanation
Indices: 88084387--88084436 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
88084377 ATTTTATCAT
*
88084387 TTATCATTTGTCGGGCA
1 TTATCATTTATCGGGCA
* *
88084404 TTATAATTGATCGGGCA
1 TTATCATTTATCGGGCA
88084421 CTT-TCATTTATCGGGC
1 -TTATCATTTATCGGGC
88084437 TTTAATGATT
Statistics
Matches: 27, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
17 25 0.93
18 2 0.07
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (17 bp):
TTATCATTTATCGGGCA
Found at i:88088555 original size:48 final size:48
Alignment explanation
Indices: 88088484--88088668 Score: 280
Period size: 48 Copynumber: 3.9 Consensus size: 48
88088474 CACCACGATT
* **
88088484 TATGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGTGTTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
*
88088532 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
88088580 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
* * * * * *
88088628 TATGTGTGCCAGTGTAAGACCATATTTGGGATATGGCATCG
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCG
88088669 ACCTCGGTAT
Statistics
Matches: 126, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 126 1.00
ACGTcount: A:0.26, C:0.15, G:0.31, T:0.28
Consensus pattern (48 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA
Found at i:88088680 original size:48 final size:49
Alignment explanation
Indices: 88088498--88088712 Score: 177
Period size: 48 Copynumber: 4.5 Consensus size: 49
88088488 AGAGCTAGTA
* * *** * * *
88088498 TAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGAGA-GCTAGTG
1 TAAGACCATATCTGGGATATGGCATCGACATCGATATGTGATGCCAGTG
* * * * * * *
88088546 TAAGACCATGTCTGGGACATGGCATTGGCATTGATATGAGA-GCTAGTG
1 TAAGACCATATCTGGGATATGGCATCGACATCGATATGTGATGCCAGTG
* * * *
88088594 TAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTG-TGCCAGTG
1 TAAGACCATATCTGGGATATGGCATCGACATCGATATGTGATGCCAGTG
* * * **
88088642 TAAGACCATATTTGGGATATGGCATCGACCTCGGTATGTGATTTC-GTG
1 TAAGACCATATCTGGGATATGGCATCGACATCGATATGTGATGCCAGTG
*
88088690 TAAGACCATATCTGTGATATGGC
1 TAAGACCATATCTGGGATATGGC
88088713 GTTGATATGA
Statistics
Matches: 148, Mismatches: 17, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
48 146 0.99
49 2 0.01
ACGTcount: A:0.25, C:0.16, G:0.30, T:0.29
Consensus pattern (49 bp):
TAAGACCATATCTGGGATATGGCATCGACATCGATATGTGATGCCAGTG
Found at i:88088691 original size:96 final size:96
Alignment explanation
Indices: 88088484--88088759 Score: 269
Period size: 96 Copynumber: 2.9 Consensus size: 96
88088474 CACCACGATT
* ** *
88088484 TATGAGAGCTAGTATAAGACCATGTCTGGGACATGGCATCGGTGTTGATATGAGAGCTAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTAA
* * * *
88088549 GACCATGTCTGGGACATGGCATTGGCATTGA
66 GACCATATCTGGGACATGGCATCGACATCGA
* *
88088580 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGTGTGCCAGTGTAA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTAA
* * * *
88088645 GACCATATTTGGGATATGGCATCGACCTCGG
66 GACCATATCTGGGACATGGCATCGACATCGA
* ** * * * * **
88088676 TATGTGATTTCGTGTAAGACCATATCTGTG--AT---AT-GGCGTTGATATGAGATTTCA-TGTA
1 TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGA-GCCAGTGTA
* *
88088734 AGACCATGTTTGGGACATGGCATCGA
65 AGACCATATCTGGGACATGGCATCGA
88088760 TATGAGGTCT
Statistics
Matches: 152, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
90 40 0.26
91 4 0.03
94 2 0.01
96 106 0.70
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.29
Consensus pattern (96 bp):
TATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGATATGAGAGCCAGTGTAA
GACCATATCTGGGACATGGCATCGACATCGA
Found at i:88088754 original size:42 final size:42
Alignment explanation
Indices: 88088592--88088799 Score: 123
Period size: 42 Copynumber: 4.7 Consensus size: 42
88088582 TGAGAGCTAG
* *
88088592 TGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGATATGTGTGCCA
1 TGTAAGACCATATCTGGGACATGGCATC-G-ATATGAGAT-T-T--CA
* * * *
88088639 GTGTAAGACCATATTTGGGATATGGCATCGACCTCGGTATGTGATTTCG
1 -TGTAAGACCATATCTGGGACATGGCATCGA------TATGAGATTTCA
* * * *
88088688 TGTAAGACCATATCTGTGATATGGCGTTGATATGAGATTTCA
1 TGTAAGACCATATCTGGGACATGGCATCGATATGAGATTTCA
* * * * *
88088730 TGTAAGACCATGTTTGGGACATGGCATCGATATGAGGTCTCG
1 TGTAAGACCATATCTGGGACATGGCATCGATATGAGATTTCA
* *
88088772 TATAAGACCA-AGCCTGGGACATGGCATC
1 TGTAAGACCATA-TCTGGGACATGGCATC
88088800 AGCACCGACA
Statistics
Matches: 127, Mismatches: 25, Indels: 22
0.73 0.14 0.13
Matches are distributed among these distances:
42 66 0.52
46 1 0.01
47 1 0.01
48 51 0.40
49 1 0.01
51 1 0.01
52 2 0.02
53 4 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGACATGGCATCGATATGAGATTTCA
Found at i:88094762 original size:40 final size:40
Alignment explanation
Indices: 88094718--88094901 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 40
88094708 GCTACTCGTT
* *
88094718 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
88094758 CAAATGCCTTCGGGACTTAACCCGGATT-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TTATAGTAACTCGCA
* * *
88094798 CAAATGCCTTCGGGACTT-GCCCGG-AATTAGTATCTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
** * * * * *
88094837 CAAATGCCTTC-GGATCTTATTCTGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGTTATAGTAAC-TCGCA
88094878 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGG
88094902 ACATCATTCG
Statistics
Matches: 117, Mismatches: 19, Indels: 16
0.77 0.12 0.11
Matches are distributed among these distances:
38 3 0.03
39 29 0.25
40 72 0.62
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:88094839 original size:79 final size:81
Alignment explanation
Indices: 88094718--88094902 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
88094708 GCTACTCGTT
* * **
88094718 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTTGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGAC-TTGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCC
* *
88094781 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* ** *
88094798 CAAATGCCTTCGGGACTTGCCCGGAAT-TAGTATCTCACACAAATGCCTTCGGATCTTATTCTGG
1 CAAATGCCTTCGGGACTTGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
* *
88094862 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
88094878 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTT-GCCCGGA
88094903 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.61
80 32 0.36
ACGTcount: A:0.26, C:0.26, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:88101713 original size:22 final size:22
Alignment explanation
Indices: 88101662--88101705 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
88101652 AAGCATATCC
88101662 ATACCAAATGATTATAACATTA
1 ATACCAAATGATTATAACATTA
88101684 ATACCAAATGATTATAACATTA
1 ATACCAAATGATTATAACATTA
88101706 TGCTCAAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.50, C:0.14, G:0.05, T:0.32
Consensus pattern (22 bp):
ATACCAAATGATTATAACATTA
Found at i:88102393 original size:79 final size:81
Alignment explanation
Indices: 88102282--88102466 Score: 200
Period size: 79 Copynumber: 2.3 Consensus size: 81
88102272 GGTACTCATT
* * * *
88102282 CAAATGCCTTCGGGACATAGCCCAG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGAC-TTGCCCGGAATATAGTAACTCACACAAATGCCTTC-GGATCTTAACCC
* *
88102345 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* ** *
88102362 CAAATGCCTTCGGGACTTGCCCGGAAT-TAGTATCTCACACAAATGCCTTCGGATCTTATTCTGG
1 CAAATGCCTTCGGGACTTGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
* *
88102426 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
88102442 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTT-GCCCGGA
88102467 CATCATTCGA
Statistics
Matches: 89, Mismatches: 12, Indels: 8
0.82 0.11 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.61
80 32 0.36
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTGCCCGGAATATAGTAACTCACACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Done.