Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 263 of 297
Found at i:89685814 original size:18 final size:18
Alignment explanation
Indices: 89685788--89685823 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
89685778 TCCCTGGGTG
*
89685788 ATAGTCTATTATCAACTC
1 ATAGCCTATTATCAACTC
89685806 ATAGCCTATTATCAACTC
1 ATAGCCTATTATCAACTC
89685824 TAACCATCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.33, C:0.25, G:0.06, T:0.36
Consensus pattern (18 bp):
ATAGCCTATTATCAACTC
Found at i:89690602 original size:48 final size:46
Alignment explanation
Indices: 89690493--89690702 Score: 224
Period size: 46 Copynumber: 4.5 Consensus size: 46
89690483 CGCGAGGTAA
* * ** * * *
89690493 ATGCATGTCCCAGACATGTCTTACAGTAGCTCTTGTCTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTCGAGGCCG
* * *
89690539 ATGAATGTCCTAGACATGTCTTACACTGGCT-TAAATATTGCGAGGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCT-CAT-TT-CGAGGCCG
* * * *
89690587 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATGCCG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTCGAGGCCG
* * * *
89690633 ATGCATGTACCAGACATGTCTTACACTGGCTCTCATTTTGTGGCTG
1 ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTCGAGGCCG
89690679 ATGCATGTCCCAGACATGTCTTAC
1 ATGCATGTCCCAGACATGTCTTAC
89690703 GCTAGCATAC
Statistics
Matches: 135, Mismatches: 25, Indels: 8
0.80 0.15 0.05
Matches are distributed among these distances:
45 1 0.01
46 95 0.70
47 3 0.02
48 35 0.26
49 1 0.01
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (46 bp):
ATGCATGTCCCAGACATGTCTTACACTGGCTCTCATTTCGAGGCCG
Found at i:89690648 original size:94 final size:92
Alignment explanation
Indices: 89690493--89690708 Score: 301
Period size: 94 Copynumber: 2.3 Consensus size: 92
89690483 CGCGAGGTAA
* *
89690493 ATGCATGTCCCAGACATGTCTTACAGTAGCTCTTGTCTCAATGCCGATGAATGTCCTAGACATGT
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGAATGTCCTAGACATGT
89690558 CTTACACTGGCT-TAAATATTGCGAGGCCG
66 CTTACACTGGCTCT-AAT-TT-CGAGGCCG
* *
89690587 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTTTCAATGCCGATGCATGTACC-AGACATG
1 ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGAATGT-CCTAGACATG
* * * *
89690651 TCTTACACTGGCTCTCATTTTGTGGCTG
65 TCTTACACTGGCTCTAATTTCGAGGCCG
*
89690679 ATGCATGTCCCAGACATGTCTTACGCTAGC
1 ATGCATGTCCCAGACATGTCTTACACTAGC
89690709 ATACATATCA
Statistics
Matches: 111, Mismatches: 9, Indels: 6
0.88 0.07 0.05
Matches are distributed among these distances:
92 34 0.31
93 2 0.02
94 72 0.65
95 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (92 bp):
ATGCATGTCCCAGACATGTCTTACACTAGCTCTCGTCTCAATGCCGATGAATGTCCTAGACATGT
CTTACACTGGCTCTAATTTCGAGGCCG
Found at i:89701986 original size:40 final size:40
Alignment explanation
Indices: 89701942--89702093 Score: 189
Period size: 40 Copynumber: 3.8 Consensus size: 40
89701932 ATAACCACAA
* * * *
89701942 GCACAATTGCCTTCGAGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* *
89701982 GCACAAATGCCTTCGGGTCTTAGCCAGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * *
89702022 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
89702062 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
89702094 CATTCAAATG
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
39 1 0.01
40 94 0.95
41 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:89709492 original size:27 final size:25
Alignment explanation
Indices: 89709427--89709498 Score: 72
Period size: 27 Copynumber: 2.8 Consensus size: 25
89709417 TCTTGTACAT
* * *
89709427 GTATGCTCACACGAGCAGTGAATCG
1 GTATACTCACACGAGCTGTGAATAG
*
89709452 GTATGCTCACACGAGCTGTGAAAATAG
1 GTATACTCACACGAGCTGTG--AATAG
* *
89709479 GTCTACTCACACGAGATGTG
1 GTATACTCACACGAGCTGTG
89709499 GGTTGAAACG
Statistics
Matches: 40, Mismatches: 5, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
25 19 0.47
27 21 0.52
ACGTcount: A:0.29, C:0.22, G:0.26, T:0.22
Consensus pattern (25 bp):
GTATACTCACACGAGCTGTGAATAG
Found at i:89711035 original size:83 final size:83
Alignment explanation
Indices: 89710887--89711063 Score: 311
Period size: 83 Copynumber: 2.1 Consensus size: 83
89710877 CCATAATTAT
* *
89710887 TTCATACAT-ATTTAACTACTTTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
1 TTCATGCATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
89710951 CATTCACATTCAACAGAG
66 CATTCACATTCAACAGAG
89710969 TTCATGCATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
1 TTCATGCATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
**
89711034 CATTCACATTCAGTAGAG
66 CATTCACATTCAACAGAG
89711052 TTCATGCATCAT
1 TTCATGCATCAT
89711064 CATAGTATTC
Statistics
Matches: 90, Mismatches: 4, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 8 0.09
83 82 0.91
ACGTcount: A:0.32, C:0.21, G:0.12, T:0.36
Consensus pattern (83 bp):
TTCATGCATCATTTAACTACATTGGTGGATACCCATATACCACAATTAATCTTATGCATGTTTAG
CATTCACATTCAACAGAG
Found at i:89711606 original size:15 final size:15
Alignment explanation
Indices: 89711588--89711630 Score: 54
Period size: 15 Copynumber: 2.9 Consensus size: 15
89711578 TCGAATTATT
89711588 TTGACTCGAATCAAC
1 TTGACTCGAATCAAC
*
89711603 TTGACTC-AATTCGAC
1 TTGACTCGAA-TCAAC
89711618 TTGACTCG-ATCAA
1 TTGACTCGAATCAA
89711631 ATACTCACCG
Statistics
Matches: 24, Mismatches: 2, Indels: 5
0.77 0.06 0.16
Matches are distributed among these distances:
14 5 0.21
15 19 0.79
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (15 bp):
TTGACTCGAATCAAC
Found at i:89712955 original size:11 final size:11
Alignment explanation
Indices: 89712939--89712981 Score: 50
Period size: 11 Copynumber: 3.7 Consensus size: 11
89712929 TGGGTAAAAT
*
89712939 TATTTTAATAA
1 TATTTTATTAA
89712950 TATTTTATTAAGA
1 TATTTTATT-A-A
*
89712963 TGTTTTATTAA
1 TATTTTATTAA
89712974 TATTTTAT
1 TATTTTAT
89712982 GTATTTTAAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
11 16 0.59
12 2 0.07
13 9 0.33
ACGTcount: A:0.35, C:0.00, G:0.05, T:0.60
Consensus pattern (11 bp):
TATTTTATTAA
Found at i:89715903 original size:27 final size:27
Alignment explanation
Indices: 89715873--89716024 Score: 175
Period size: 27 Copynumber: 5.6 Consensus size: 27
89715863 CACCTACAGG
*
89715873 GGTATTTCGATAATTTTACAAATCAGA
1 GGTATTTCGATAATTTTACAAATCGGA
* * *
89715900 GGTATTTTGGTAATTTTACAAAT-TGA
1 GGTATTTCGATAATTTTACAAATCGGA
*
89715926 GGCTATTTC-AGTAATTTTACAAA-CTGA
1 GG-TATTTCGA-TAATTTTACAAATCGGA
* *
89715953 GGGTATTTCGATAATTTTACAAATTGGG
1 -GGTATTTCGATAATTTTACAAATCGGA
* *
89715981 GGTATTTCGGTAATTTTACAAATCGGG
1 GGTATTTCGATAATTTTACAAATCGGA
89716008 GGTATTTCGATAATTTT
1 GGTATTTCGATAATTTT
89716025 TACCTATTTT
Statistics
Matches: 108, Mismatches: 11, Indels: 12
0.82 0.08 0.09
Matches are distributed among these distances:
26 4 0.04
27 100 0.93
28 4 0.04
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (27 bp):
GGTATTTCGATAATTTTACAAATCGGA
Found at i:89715934 original size:54 final size:54
Alignment explanation
Indices: 89715875--89716024 Score: 196
Period size: 54 Copynumber: 2.8 Consensus size: 54
89715865 CCTACAGGGG
* *
89715875 TATTTCGATAATTTTACAAATCAGAGGTATTTTGGTAATTTTACAAATTGAGGC
1 TATTTCGATAATTTTACAAATCAGAGGTATTTCGATAATTTTACAAATTGAGGC
* * *
89715929 TATTTC-AGTAATTTTACAAA-CTGAGGGTATTTCGATAATTTTACAAATTGGGGG
1 TATTTCGA-TAATTTTACAAATCAGA-GGTATTTCGATAATTTTACAAATTGAGGC
* * *
89715983 TATTTCGGTAATTTTACAAATCGGGGGTATTTCGATAATTTT
1 TATTTCGATAATTTTACAAATCAGAGGTATTTCGATAATTTT
89716025 TACCTATTTT
Statistics
Matches: 84, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
53 4 0.05
54 78 0.93
55 2 0.02
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (54 bp):
TATTTCGATAATTTTACAAATCAGAGGTATTTCGATAATTTTACAAATTGAGGC
Found at i:89716014 original size:81 final size:81
Alignment explanation
Indices: 89715872--89716024 Score: 227
Period size: 81 Copynumber: 1.9 Consensus size: 81
89715862 TCACCTACAG
* *
89715872 GGGTATTTCGATAATTTTACAAATCAGAGGTATTTTGGTAATTTTACAAATTGAGGCTATTTC-A
1 GGGTATTTCGATAATTTTACAAATCAGAGGTATTTCGGTAATTTTACAAATCGAGGCTATTTCGA
89715936 GTAATTTTACAAACTGA
66 -TAATTTTACAAACTGA
** * * *
89715953 GGGTATTTCGATAATTTTACAAATTGGGGGTATTTCGGTAATTTTACAAATCGGGGGTATTTCGA
1 GGGTATTTCGATAATTTTACAAATCAGAGGTATTTCGGTAATTTTACAAATCGAGGCTATTTCGA
89716018 TAATTTT
66 TAATTTT
89716025 TACCTATTTT
Statistics
Matches: 64, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
81 63 0.98
82 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.20, T:0.41
Consensus pattern (81 bp):
GGGTATTTCGATAATTTTACAAATCAGAGGTATTTCGGTAATTTTACAAATCGAGGCTATTTCGA
TAATTTTACAAACTGA
Found at i:89723428 original size:29 final size:27
Alignment explanation
Indices: 89723374--89723430 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 27
89723364 ACTATGAATG
* * *
89723374 TGATTTGGGCCTAATGGGTCATATGAA
1 TGATTTGGGCCTAAGGGGCCAAATGAA
89723401 TGATATTGGGCCTAAAGGGGCCAAATGAA
1 TGAT-TTGGGCCT-AAGGGGCCAAATGAA
89723430 T
1 T
89723431 AAGTTTGGAT
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
27 4 0.16
28 8 0.32
29 13 0.52
ACGTcount: A:0.30, C:0.12, G:0.30, T:0.28
Consensus pattern (27 bp):
TGATTTGGGCCTAAGGGGCCAAATGAA
Found at i:89728059 original size:26 final size:26
Alignment explanation
Indices: 89728030--89728086 Score: 71
Period size: 26 Copynumber: 2.2 Consensus size: 26
89728020 TCTCATCCCT
*
89728030 ATTTTA-CCCTCATAAAAATTTTGATG
1 ATTTTACCCCTCAT-AAAATTTTGACG
**
89728056 ATTTTACCCCTGGTAAAATTTTGACG
1 ATTTTACCCCTCATAAAATTTTGACG
89728082 ATTTT
1 ATTTT
89728087 TCCTTTGGTA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 22 0.81
27 5 0.19
ACGTcount: A:0.30, C:0.16, G:0.11, T:0.44
Consensus pattern (26 bp):
ATTTTACCCCTCATAAAATTTTGACG
Found at i:89728095 original size:26 final size:26
Alignment explanation
Indices: 89728044--89728103 Score: 84
Period size: 26 Copynumber: 2.3 Consensus size: 26
89728034 TACCCTCATA
*
89728044 AAAATTTTGATGATTTTACCCCTGGT
1 AAAATTTTGACGATTTTACCCCTGGT
* **
89728070 AAAATTTTGACGATTTTTCCTTTGGT
1 AAAATTTTGACGATTTTACCCCTGGT
89728096 AAAATTTT
1 AAAATTTT
89728104 AAGAAAATAT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.28, C:0.12, G:0.13, T:0.47
Consensus pattern (26 bp):
AAAATTTTGACGATTTTACCCCTGGT
Found at i:89733055 original size:57 final size:56
Alignment explanation
Indices: 89732948--89733059 Score: 179
Period size: 57 Copynumber: 2.0 Consensus size: 56
89732938 TGTGAGTCTG
* * *
89732948 ACTTTCTTGCATCTTTATCTAATACTGTGTCGGACATCCCAAAATCCTAAAATGTT
1 ACTTCCTTGCATCTTTATCCAATACTGGGTCGGACATCCCAAAATCCTAAAATGTT
*
89733004 ACTTCCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATTCTAAAATGT
1 ACTTCCTTGCATCTTTATCCAATAC-TGGGTCGGACATCCCAAAATCCTAAAATGT
89733060 ATAAGATTCA
Statistics
Matches: 51, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
56 23 0.45
57 28 0.55
ACGTcount: A:0.29, C:0.24, G:0.12, T:0.35
Consensus pattern (56 bp):
ACTTCCTTGCATCTTTATCCAATACTGGGTCGGACATCCCAAAATCCTAAAATGTT
Found at i:89735625 original size:635 final size:633
Alignment explanation
Indices: 89730290--89738504 Score: 12408
Period size: 633 Copynumber: 12.9 Consensus size: 633
89730280 TCATAGCTCC
* *
89730290 TTTCTAGAGTTTGGAATCAAGACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* *
89730355 GTTCAGTAAACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
*
89730420 AACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * *
89730485 CAACTTCCTACCATGCCACAATTTGTATGGAGTTTTCGATTCTACCTTATTTGGTACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* *
89730550 AAATATAACAAGTCGTTTGTACAACGTATCCCGAAAAAGAGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * * *
89730615 ATCGAATATACCATGTCTAAAAAAGTTCAATTTCTTCTCTCTGCTGTGCCATTCTATTGTAGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
89730680 GCCCGACACGGTTAATTTGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGACA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
89730745 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTACGGGTAAA-GTAGTTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* * * * * *
89730809 ACACAAAACTTTTTGAATTTATCAAAAGTTTCACACTTGCAATGCATTAAGTATACATGCCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
* *
89730874 TTTGGAATAGTCATTGATAAAAGTTACATAATACTCGTAACCACATCT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
*
89730922 TTTCTAGAGCTTGGAATCAACACTCTACA-CAACTTCGTCATATGTGAGTAAGGCATCATCTTCC
1 TTTCTAGAGCTTGGAATCAACACTCTACATC-GCTTCGTCATATGTGAGTAAGGCATCATCTTCC
* * * *
89730986 TATTCAGCAGACGCAGTGTTAAAAACACTTCTACTAGATTGGAAGAACTCCAACCTATGTGAGTC
65 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
* * * *
89731051 CGACTTTCTTGCATCTTTATCCAATACGTGGGTCAGACATTCAAAAATCCAAAAATGTATAAGAT
130 CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGAT
* *
89731116 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGTCTTATTTGGCACAACATTC
195 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTC
* * **
89731181 AGAATATAACAAGTCATTTGTACAATGTATCCCCAAAAAGAATTTGACAACTTCAAATAACTTAA
260 AGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
*
89731246 TATCGAATATACCATGTCTAGCAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
325 TATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
*
89731311 TGCCCGACACGGTTATTTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* *
89731376 AAATAT-CCCCACCTCGACCGGACCGAAGTGCCTTTATGGGTAAACGTAGTTATTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
* * *
89731440 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATACATCAGGTATACACGTCTAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
* *
89731505 ATTTGGAATAGTCATTGATAAGGGTTACATAATACTCGTAACCACCTTT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* *
89731554 TTTCTAGAGCTTGGAATTAACACTCTACATCGCTTCGTCATATTTGAGTAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* *
89731619 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCTACCCTATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
* * * * *
89731684 GAATTTCTCGCATCTTTATCTAATACGTGGGTCGGACATCCCAAAATCCTAGAATGTATGAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * * *
89731749 CAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTTGTACAACATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* *
89731814 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCGAATAACATAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
*
89731879 ATCGAATATACCATGTCTAACAATGATCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
89731944 GCCCGACACGATTAATTGGGATAGAATCTCATTCTCTTTGAGGTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
* *
89732009 AATATTCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGCTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* * *
89732074 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACACTTACGATGTATCAGGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
* *
89732139 TTTGGAATACTCATTGATAAAGGTTACATAATACTCGTAACCACCTAT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * *
89732187 TTTCTAGAGCTTGG-ATCAACACTCTAAATCGCTTCGTCATATGTGAGTGAGGCATCATCTTCAT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * * *
89732251 ATTCAGCAGACTCAGTGTTAAAAACACTTTTGTTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
* *
89732316 GACTTTCTTGCATCTTTATCTAATAC-TGTGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
**
89732380 CAACTTCCTACCATGCTGCAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* * *
89732445 -AATATAATAAGTCATTTGTACAACGTATCCCCAAAAAGAGTTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * *
89732509 ATCGAATATACCATGTCTAACAATGATCGATTTCTTATCTCTTCTGTGCCATTCTGTTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
89732574 GCCTGACA-TGTGTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
391 GCCCGACACGGT-TAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
89732638 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
* * *
89732703 CACACGAAACTTTTTGGATTTATCAAAAGTTTCACTCTTGCGATGTATCAGGTATACATGTCCCT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
*
89732768 ATTTGGAATAGTCATTGATAAAGGTTACATACTACTCGTAACCACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * ** * * *
89732817 TTTCTAGAGCTGGGAATCAACTA-TCTACTTAACTTCGTCATATATGAGCAAGGCATCATCTTCT
1 TTTCTAGAGCTTGGAATCAAC-ACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCC
89732881 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
65 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
* * * **
89732946 TGACTTTCTTGCATCTTTATCTAATAC-TGTGTCGGACATCCCAAAATCCTAAAATGT-TACTTC
130 CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATA--AG
* * * *
89733009 CTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATTCTAAAATGTATA-AGATTCAACT
193 ATT-CAAC--T-TCC--TA-------C---CATGCCACAA-T-T----TGTATAGAG-TT----T
* * ** * * * * ** * *
89733073 TC-CTACCATGCCACAATTTGTCTAGAGATTTCGATTCTGCCTAATTTGGCACA-TCATTCAGAA
231 TCGAT-TC-TGCC-TTATTTGGC---ACA--TC-ATTCAG---AATATAACA-AGTCGTT-TG--
89733136 CATAACAAGTCGTTTGTACAACATATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAATATC
280 --T-ACAA--C----G-------TATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAATATC
* * * * * * *
89733201 GAATATACCATGTCTAACAATGTTCGATTTCTTCTGTCTTCTATGCCATTCAGTTATGGTGTTCC
329 GAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGTGCC
* *
89733266 CGACATGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTTCCTTAAGAACTCATCAGATAAAT
394 CGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATAAAT
* * * *
89733331 ATGCCCCACCTCGACCAGACTGTAGTGCCTTTATGGATAAACGTAGTTGTTTCTACTCTTCCACA
459 ATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCCACA
* * * *
89733396 CGAAACTTTTTCAATTTATCAAAAGTTTCACTCTTGCAATGCATTAAGTATACATGTCCATATTT
524 CGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATATTT
89733461 GGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
589 GGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
89733506 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
*
89733571 GTTCAGCAGACTTAGTGTTAAAAGA-ACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
66 GTTCAGCAGACTCAGTGTTAAAA-ACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
* * *
89733635 TGACTTTCTTGCATCTTTATCCAATACATGGGTTGGACATCCCAAAATCCTAAAATGTATAAGAT
130 CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGAT
* * * * *
89733700 TCAACTTCCGACCATGCCGCAATTTGTATAGAGTTTTCAATTCTGCCTTATTTGGCACAACATTT
195 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTC
* * * **
89733765 AAAATATAACAAGTCATTTTTACAACGTATCCCCAAAAAAGAATTTGACAACTTCAAATAACTTA
260 AGAATATAACAAGTCGTTTGTACAACGTATCCCC-AAAAAGAGGTTGACAACTTCAAATAACTTA
* * * *
89733830 ATATCGAATATACCATGTCTAGCAATGTTTGATTTCTTCTCTCTGCTGTGCCATTCTATTATGGA
324 ATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGA
89733895 GTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGA
389 GTGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGA
* * * *
89733960 TAAATATGCCCCACCTCGACCAGACTGAAGTGCCTTTTTGGGTAAACATAGTTATTTCTACACTT
454 TAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTT
*
89734025 CCACATGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGC-ATGCATCAGGTATACATGTCCA
519 CCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCA
*
89734089 TATTTGGAATAGTCATTGATAAAGGTTACATAATACTCATAACCACCTCT
584 TATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
*
89734139 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCA-ATTGTGAGTAAGGTATCATCTTCC
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATA-TGTGAGTAAGGCATCATCTTCC
* ** * * * *
89734203 TGTTCAGTAGACTCAGTGTTAAAAACAAGTCTGCTAGATTGGAGGAAATACAGCTTATGTGAGTC
65 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
*
89734268 CGACTTTCTTGCATCTTTATCCAATATGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGAT
130 CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGAT
* * *
89734333 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTTGCATAACATTC
195 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTC
*
89734398 AGAATATAACAAGAT-GTTTGTACAACGTATCCCCAAGAAGAGGTTGACAACTTCAAATAACTTA
260 AGAATATAACAAG-TCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTA
* *
89734462 ATATCGAAGATACCATGTCTAACAATGTTCGATTTCTTCCCTCTGCTGTGCCATTCTGTTGTGGA
324 ATATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGA
*
89734527 GTGCCCGGA-ACGGTTAATTGGGATAGGATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAG
389 GTGCCC-GACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAG
* *
89734591 ATAAATATGCCCCACCTCGACCAGACCAAAGTGCCTTTACGGGTAAA-GTAGTTGTTTCTACACT
453 ATAAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACT
* * * * *
89734655 TCCACACAAAACTTTTTGAATTTATCAAAAGTTTCACACTTGCAATGCATTAAGTATACATG-CC
518 TCCACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCC
*
89734719 TATATTTGGAATAG----TGATAAAAGTTACATAATACTCGTAACCACCTCT
583 -ATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * *
89734767 TTTCTAGAGCTTGGAATCAACATTCTACATCACTTCGCCATATGTGAGCAAGGCATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
** *
89734832 GTTCAGCAGACTCAGAATTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCT
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
*
89734897 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAATTGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* *
89734962 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTTGATTCTGCCTTTTTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* ** *
89735027 GAACATAACAAGTCGTTTGTACAACGTATCCGTAAAAAGTGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
89735092 GTCGAATATACCATGTCTAATAATGTTC-ATTTTCTTATCTCTGCGGTGCCATTCTGTTGTGGAG
326 ATCGAATATACCATGTCTAACAATGTTCGA-TTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
* * *
89735156 TGCCTGGCACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTAATCAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* * * * *
89735221 AAATATCCCCCACCTAGACCAGACAGAAGTGCCTTTATGGGAAAACGTAGATGTTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
*
89735286 CACACGAAACTTTTTGAAATTTTATCAAAAGTTTCACTCTTGCAATGCATCAGGTATACATGTCC
520 CACACGAAACTTTTTG-AA-TTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCC
* * **
89735351 ATATTTGGAAGAGTCATTGATAAAGGTTACATAACACTTATAACCACCTCT
583 ATATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * *
89735402 TTTCTAGAGCTTGGAATCAACACTCTGCATCGCTTCATCATATGTGAGTGAGGAATCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
*
89735467 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATCTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
* *
89735532 AACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATACGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
89735597 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* *
89735662 GAATATAACAAGTCGTTTGTACAATGTATCCTCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* *
89735727 ATCAAATATACCATGTCTAACAATGATCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* * * *
89735792 GCCCGGCATGGTTAATTGGGATAGAATCTCATTCTCTTTCAGGTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
89735857 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGCTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
89735922 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
*
89735987 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCA-TTACT
586 TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCT-CT
* * * *
89736035 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATATGAGTGAGGCGTCATCTTCAT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
*
89736100 ATTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
* * *
89736165 GACTTTCTTGTATCTTTATCCAATACGTGGGTCAGACTTCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * *
89736230 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCGTTATTTGGCACATTACTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
*
89736295 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGAAAACTTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * *
89736360 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTC-CTTGCTATGCCATTCTGTTTTGGGG
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTC-TGCTGTGCCATTCTGTTGTGGAG
*
89736424 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCGTTAAGAACTCATCAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* *
89736489 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGAAAACGTAGTTCTTTCTACACTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
** * *
89736554 CACTTGAAACTTTTTCAATTTATCACAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
* * * *
89736619 ACTTGGAATAGTCATTGATAAAGATTACATAATACTCGTAACCATCTAT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * * * * *
89736668 TTTCTAGAGCTTGGGATCAACACTCTACATCGTTTCGTCATTTTTGAGCAAGGCGTCATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* *
89736733 GTTCAGCAGACTTAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGATTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
*
89736798 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCTTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* ** *
89736863 CAACTTCCTACCATCCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTTCCACAACATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
*
89736928 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAAATTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
89736993 ATCGAATATACCATGTCTAACAATGATCGATTTC-TCTCCCTGCTGTACCATTCTGTTCTGGAGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
* *
89737057 GCCCGACACGGTTAATTGGGATAGAATCTCATACTCTATGAGCTGCCTTAAGAACTCATCAGATA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
*
89737122 AATATGCCCCACCTCGACCAGACCGAAGTTCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
*
89737187 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGTATCAGG-AGTACATGTCCAT
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTA-TACATGTCCAT
*
89737251 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGGAACCACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * ** * * *
89737300 TTTCTAGAGCTGGGAATCAACTA-TCTACTTAACTTCATCATATGTGAGCAAGGCATCATCTTCT
1 TTTCTAGAGCTTGGAATCAAC-ACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCC
* * *
89737364 TGTTCAACAGACTCAGTGTTGAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTT
65 TGTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTC
* *
89737429 CGACTTTCTTGCATCTTTATCCTATACGTGGGTCGGACATCCCAAAATCCTAATATGTATAAGAT
130 CGACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGAT
*
89737494 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTAATTTGGCACATCATTC
195 TCAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTC
** *
89737559 AGAACGTAACAAGTCGTTTGTACAACATATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
260 AGAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAA
* *
89737624 TATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTATGGTG
325 TATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAG
* * *
89737689 TTCCCGACATGATTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
390 TGCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGAT
* * * *
89737754 AAATATGCCCCACCTCGACCAGACCGTAGTGCCTTTATGGGTAAACATAGGTGTTTCTACTCTTC
455 AAATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTC
* * *
89737819 CACACGAAACTTTTTCAATTTATCAAAAGTTTCACTCTTGCGATGCATTAAGTATACATGTCCAT
520 CACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCAT
**
89737884 CCTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
585 ATTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
* * *
89737933 TTTCTAAAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGACATTATCTTCCT
1 TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
* * *
89737998 ATTCAGCAGACTCATTGTTAAAAACACTTCTGTTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
66 GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
*
89738063 GACTTTCTTGCATCTTTATCCAATACGTGGGTCAGACATCCCAAAATCCTAAAATGTATAAGATT
131 GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
* * *
89738128 CAACTTCCTATCGTGCCACAATTTGTATAGAGTTTTCGATTCTACCTTATTTGGCACATCATTCA
196 CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
* * * * *
89738193 GAATATAACAAGTCATTTGGACAGCGCATCCCCAAAAAGAGGTTGACAAATTCAAATAACTTAAT
261 GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
* * * *
89738258 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTTTGCTATGCCATTCGGTTG-GGGGT
326 ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
*
89738322 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCT-TGAGGTGCCTTAAGAACTCATCAGAGA
391 GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
* * *
89738386 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGATAAACATAGTTGTTTCTACACTTTC
456 AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
* * * *
89738451 GCACGAAACTTTTTGAATGTATCAAAAGTATCACTCTTGCGATGCATTAGGTAT
521 ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTAT
89738505 GGCTTGTATT
Statistics
Matches: 6901, Mismatches: 576, Indels: 213
0.90 0.07 0.03
Matches are distributed among these distances:
627 3 0.00
628 480 0.07
629 35 0.01
630 367 0.05
631 533 0.08
632 1940 0.28
633 2132 0.31
634 251 0.04
635 526 0.08
636 4 0.00
638 2 0.00
640 1 0.00
644 1 0.00
645 1 0.00
646 4 0.00
647 1 0.00
648 6 0.00
649 1 0.00
650 1 0.00
651 1 0.00
652 11 0.00
653 2 0.00
654 8 0.00
655 3 0.00
656 1 0.00
657 1 0.00
658 6 0.00
659 4 0.00
660 6 0.00
661 6 0.00
662 4 0.00
663 6 0.00
664 1 0.00
665 2 0.00
666 4 0.00
667 8 0.00
668 2 0.00
670 10 0.00
671 3 0.00
672 1 0.00
673 7 0.00
675 1 0.00
676 5 0.00
678 1 0.00
682 1 0.00
683 1 0.00
685 3 0.00
686 1 0.00
688 4 0.00
689 465 0.07
690 31 0.00
691 2 0.00
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (633 bp):
TTTCTAGAGCTTGGAATCAACACTCTACATCGCTTCGTCATATGTGAGTAAGGCATCATCTTCCT
GTTCAGCAGACTCAGTGTTAAAAACACTTCTGCTAGATTGGAAGAACTCCAGCCTATGTGAGTCC
GACTTTCTTGCATCTTTATCCAATACGTGGGTCGGACATCCCAAAATCCTAAAATGTATAAGATT
CAACTTCCTACCATGCCACAATTTGTATAGAGTTTTCGATTCTGCCTTATTTGGCACATCATTCA
GAATATAACAAGTCGTTTGTACAACGTATCCCCAAAAAGAGGTTGACAACTTCAAATAACTTAAT
ATCGAATATACCATGTCTAACAATGTTCGATTTCTTCTCTCTGCTGTGCCATTCTGTTGTGGAGT
GCCCGACACGGTTAATTGGGATAGAATCTCATTCTCTATGAGGTGCCTTAAGAACTCATCAGATA
AATATGCCCCACCTCGACCAGACCGAAGTGCCTTTATGGGTAAACGTAGTTGTTTCTACACTTCC
ACACGAAACTTTTTGAATTTATCAAAAGTTTCACTCTTGCGATGCATCAGGTATACATGTCCATA
TTTGGAATAGTCATTGATAAAGGTTACATAATACTCGTAACCACCTCT
Found at i:89738667 original size:22 final size:26
Alignment explanation
Indices: 89738623--89738673 Score: 65
Period size: 26 Copynumber: 2.1 Consensus size: 26
89738613 AAATTGATTC
89738623 ATAAATGTATTAAAATGTTGGTG-GAA
1 ATAAATGTATTAAAATG-TGGTGAGAA
89738649 ATAAATG-ATT-AAATG-GGTGAGAA
1 ATAAATGTATTAAAATGTGGTGAGAA
89738672 AT
1 AT
89738674 TTGGCTTGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 4 0.17
23 5 0.21
24 5 0.21
25 3 0.12
26 7 0.29
ACGTcount: A:0.45, C:0.00, G:0.24, T:0.31
Consensus pattern (26 bp):
ATAAATGTATTAAAATGTGGTGAGAA
Found at i:89741575 original size:39 final size:40
Alignment explanation
Indices: 89741458--89741642 Score: 198
Period size: 40 Copynumber: 4.7 Consensus size: 40
89741448 GCTACTCGTT
* *
89741458 CAAATGCCTTCGGGACATAGCCCGG-TTATATTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
89741498 CAATTGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
89741538 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * * * * * *
89741577 CAATTGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
89741618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
89741643 CATCATTCAA
Statistics
Matches: 120, Mismatches: 20, Indels: 10
0.80 0.13 0.07
Matches are distributed among these distances:
38 1 0.01
39 32 0.27
40 76 0.63
41 11 0.09
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:89741575 original size:79 final size:82
Alignment explanation
Indices: 89741458--89741642 Score: 220
Period size: 79 Copynumber: 2.3 Consensus size: 82
89741448 GCTACTCGTT
* * * *
89741458 CAAATGCCTTCGGGACATAGCCCGG-TTATATTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTC-AGATCTTAACCC
* *
89741521 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
89741538 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAATTGCCTTCAGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCAGATCTTAACCCG
* *
89741601 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
89741618 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
89741643 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.02
79 54 0.60
80 34 0.38
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.26
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAATTGCCTTCAGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:89742815 original size:314 final size:314
Alignment explanation
Indices: 89742246--89742852 Score: 1115
Period size: 314 Copynumber: 1.9 Consensus size: 314
89742236 ACACCCTTTT
89742246 TGTTTCAAGTTCAAAACTTGGCTAATACACACATATACACACTAGTAAAGCATCCTCTCCCTTTC
1 TGTTTCAAGTTCAAAACTTGGCTAATACACACATATACACACTAGTAAAGCATCCTCTCCCTTTC
* * *
89742311 CATCAATTTAACACATGCATTGCTCATTAACATGCAAAAGTTATATTCGGCCTTAGCACACAACT
66 CATCAATTTAACACATGCATTACTCATTAACATACAAAAATTATATTCGGCCTTAGCACACAACT
*
89742376 TGCTAGCCGATTCTTCTCCATTTAGCAACCAATGCACATATGTGCTCACTCAAAAATGCTAAAAA
131 TGCTAGCCGATTCTTCTCCATCTAGCAACCAATGCACATATGTGCTCACTCAAAAATGCTAAAAA
* *
89742441 GGAGGTTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
196 GAAGATTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
*
89742506 ATGGCATTAACACAAACTCCACCTAGGCCGAATCTTAACTCATCCTCATGCCTC
261 ATGGCATTAACACAAAATCCACCTAGGCCGAATCTTAACTCATCCTCATGCCTC
*
89742560 TGTTTCAAGTTCAAAACTTGGCTAATACACACATATATACACTAGTAAAGCATCCTCTCCCTTTC
1 TGTTTCAAGTTCAAAACTTGGCTAATACACACATATACACACTAGTAAAGCATCCTCTCCCTTTC
*
89742625 CATCAATTTAACACATGCATTACTCATTAATATACAAAAATTATATTCGGCCTTAGCACACAACT
66 CATCAATTTAACACATGCATTACTCATTAACATACAAAAATTATATTCGGCCTTAGCACACAACT
89742690 TGCTAGCCGATTCTTCTCCATCTAGCAACCAATGCACATATGTGCTCACTCAAAAATGCTAAAAA
131 TGCTAGCCGATTCTTCTCCATCTAGCAACCAATGCACATATGTGCTCACTCAAAAATGCTAAAAA
*
89742755 GAAGATTCAAGAATCATCAATCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
196 GAAGATTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
*
89742820 ATGGCATTAACACAAAATCTACCTAGGCCGAAT
261 ATGGCATTAACACAAAATCCACCTAGGCCGAAT
89742853 TTCATCCCCA
Statistics
Matches: 282, Mismatches: 11, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
314 282 1.00
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (314 bp):
TGTTTCAAGTTCAAAACTTGGCTAATACACACATATACACACTAGTAAAGCATCCTCTCCCTTTC
CATCAATTTAACACATGCATTACTCATTAACATACAAAAATTATATTCGGCCTTAGCACACAACT
TGCTAGCCGATTCTTCTCCATCTAGCAACCAATGCACATATGTGCTCACTCAAAAATGCTAAAAA
GAAGATTCAAGAATCATCAAGCCACCATCACATGCATCATTAACAAGCTTCATATTTAGCATGCA
ATGGCATTAACACAAAATCCACCTAGGCCGAATCTTAACTCATCCTCATGCCTC
Found at i:89751043 original size:20 final size:21
Alignment explanation
Indices: 89751001--89751056 Score: 60
Period size: 20 Copynumber: 2.7 Consensus size: 21
89750991 AATATTTTAA
* *
89751001 ATATAAATATTTATTTTATTTT
1 ATATAAATATTT-GTCTATTTT
89751023 ATATAAATATTTGTCTA-TTT
1 ATATAAATATTTGTCTATTTT
**
89751043 ATATTCATATTTGT
1 ATATAAATATTTGT
89751057 TTGCTAACAT
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 15 0.50
21 3 0.10
22 12 0.40
ACGTcount: A:0.34, C:0.04, G:0.04, T:0.59
Consensus pattern (21 bp):
ATATAAATATTTGTCTATTTT
Found at i:89754907 original size:28 final size:28
Alignment explanation
Indices: 89754842--89754992 Score: 214
Period size: 28 Copynumber: 5.4 Consensus size: 28
89754832 GACATTGGCG
* * * *
89754842 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
89754871 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
* *
89754899 CTAAGTGTGCGAGCTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
89754927 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
89754955 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
89754982 CTGAGTGTGCG
1 CTAAGTGTGCG
89754993 GACTTAATAT
Statistics
Matches: 113, Mismatches: 9, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 24 0.21
28 74 0.65
29 15 0.13
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:89760552 original size:25 final size:25
Alignment explanation
Indices: 89760524--89760572 Score: 73
Period size: 25 Copynumber: 2.0 Consensus size: 25
89760514 AACAATTATT
*
89760524 AATAATTCAAT-AAATTGAAAAATTA
1 AATAATTAAATAAAATT-AAAAATTA
89760549 AATAATTAAATAAAATTAAAAATT
1 AATAATTAAATAAAATTAAAAATT
89760573 TAGGAGAAAA
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
25 17 0.77
26 5 0.23
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.33
Consensus pattern (25 bp):
AATAATTAAATAAAATTAAAAATTA
Found at i:89760739 original size:17 final size:18
Alignment explanation
Indices: 89760712--89760745 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
89760702 AATTAAATAT
89760712 ATGCATATTAAATTATTA
1 ATGCATATTAAATTATTA
*
89760730 ATGC-TATTAATTTATT
1 ATGCATATTAAATTATT
89760746 TAAAAATAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.38, C:0.06, G:0.06, T:0.50
Consensus pattern (18 bp):
ATGCATATTAAATTATTA
Found at i:89761060 original size:29 final size:30
Alignment explanation
Indices: 89761003--89761059 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
89760993 CCTTTGAAAA
* *
89761003 TATTTACAAAAAGAGGCATCAAATTTTTAT
1 TATTTACAAAAAGAGGAACCAAATTTTTAT
*
89761033 TATTTACAAAAAGAGTAACCAAATTTT
1 TATTTACAAAAAGAGGAACCAAATTTT
89761060 AAAAATACTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.46, C:0.11, G:0.09, T:0.35
Consensus pattern (30 bp):
TATTTACAAAAAGAGGAACCAAATTTTTAT
Found at i:89767593 original size:21 final size:20
Alignment explanation
Indices: 89767564--89767605 Score: 50
Period size: 20 Copynumber: 2.0 Consensus size: 20
89767554 TGAAATGCAA
89767564 TCAAACTAACAC-GAATTAAAT
1 TCAAACTAA-ACTG-ATTAAAT
*
89767585 TCAAGCTAAACTGATTAAAT
1 TCAAACTAAACTGATTAAAT
89767605 T
1 T
89767606 AACCATTCCA
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
20 10 0.53
21 9 0.47
ACGTcount: A:0.48, C:0.17, G:0.07, T:0.29
Consensus pattern (20 bp):
TCAAACTAAACTGATTAAAT
Found at i:89788256 original size:27 final size:27
Alignment explanation
Indices: 89788226--89788289 Score: 83
Period size: 27 Copynumber: 2.4 Consensus size: 27
89788216 GGCATGTCAG
* * *
89788226 AGGCGGCACCAGTTGTGGGGCTGCCAT
1 AGGCGGCACCAATGGTGGGGCTGCCAA
*
89788253 AGGCTGCACCAATGGTGGGGCTGCCAA
1 AGGCGGCACCAATGGTGGGGCTGCCAA
*
89788280 AGGCGACACC
1 AGGCGGCACC
89788290 CACTGCAGTG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.20, C:0.28, G:0.38, T:0.14
Consensus pattern (27 bp):
AGGCGGCACCAATGGTGGGGCTGCCAA
Found at i:89788410 original size:15 final size:16
Alignment explanation
Indices: 89788390--89788435 Score: 58
Period size: 19 Copynumber: 2.8 Consensus size: 16
89788380 GTGTGTGAGT
89788390 GAAGGAGAA-AAAAGG
1 GAAGGAGAAGAAAAGG
89788405 GAAGGAGAAGAAAAGAAG
1 GAAGGAGAAGAAAAG--G
89788423 AGAAGGAGAAGAA
1 -GAAGGAGAAGAA
89788436 GGCGGCACTG
Statistics
Matches: 27, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
15 9 0.33
16 5 0.19
18 1 0.04
19 12 0.44
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (16 bp):
GAAGGAGAAGAAAAGG
Found at i:89788429 original size:19 final size:18
Alignment explanation
Indices: 89788395--89788435 Score: 64
Period size: 19 Copynumber: 2.2 Consensus size: 18
89788385 TGAGTGAAGG
*
89788395 AGAAAAAAGGGAAGGAGA
1 AGAAAAAAGAGAAGGAGA
89788413 AGAAAAGAAGAGAAGGAGA
1 AGAAAA-AAGAGAAGGAGA
89788432 AGAA
1 AGAA
89788436 GGCGGCACTG
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
18 6 0.29
19 15 0.71
ACGTcount: A:0.63, C:0.00, G:0.37, T:0.00
Consensus pattern (18 bp):
AGAAAAAAGAGAAGGAGA
Found at i:89788515 original size:10 final size:10
Alignment explanation
Indices: 89788500--89788525 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
89788490 GGGATGGAAG
89788500 GAAAAAGAAA
1 GAAAAAGAAA
89788510 GAAAAAGAAA
1 GAAAAAGAAA
89788520 GAAAAA
1 GAAAAA
89788526 AAGGTAATCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.81, C:0.00, G:0.19, T:0.00
Consensus pattern (10 bp):
GAAAAAGAAA
Found at i:89791499 original size:33 final size:33
Alignment explanation
Indices: 89791457--89791540 Score: 114
Period size: 33 Copynumber: 2.5 Consensus size: 33
89791447 TATCTTTGGG
*
89791457 TTGTATCCACCGTAGTACAGCACTTCCCCTGGC
1 TTGTATCCACCGTAGTACAGCACTACCCCTGGC
* * * *
89791490 TTGTATCCACTGCAGCATAGCACTACCCCTGGC
1 TTGTATCCACCGTAGTACAGCACTACCCCTGGC
*
89791523 TCGTATCCACCGTAGTAC
1 TTGTATCCACCGTAGTAC
89791541 TCCACTCCTC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
33 41 1.00
ACGTcount: A:0.20, C:0.36, G:0.18, T:0.26
Consensus pattern (33 bp):
TTGTATCCACCGTAGTACAGCACTACCCCTGGC
Found at i:89791561 original size:33 final size:33
Alignment explanation
Indices: 89791524--89791616 Score: 134
Period size: 33 Copynumber: 2.8 Consensus size: 33
89791514 ACCCCTGGCT
*
89791524 CGTATCCACCGTAGTACTCCACTCCTCCCGACC
1 CGTATCCACCGCAGTACTCCACTCCTCCCGACC
**
89791557 CGTATCCACCGCAGTACAACACTGCC-CCCGACC
1 CGTATCCACCGCAGTACTCCACT-CCTCCCGACC
*
89791590 CGTATCCACCGCAGTACTCTACTCCTC
1 CGTATCCACCGCAGTACTCCACTCCTC
89791617 ACTCCTCTTA
Statistics
Matches: 52, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
32 2 0.04
33 48 0.92
34 2 0.04
ACGTcount: A:0.20, C:0.47, G:0.13, T:0.19
Consensus pattern (33 bp):
CGTATCCACCGCAGTACTCCACTCCTCCCGACC
Found at i:89791565 original size:66 final size:66
Alignment explanation
Indices: 89791492--89791616 Score: 160
Period size: 66 Copynumber: 1.9 Consensus size: 66
89791482 CCCCTGGCTT
* * * * * * *
89791492 GTATCCACTGCAGCATAGCACTACCCCTGGCTCGTATCCACCGTAGTACTCCACTCCTCCCGACC
1 GTATCCACCGCAGCACAACACTACCCCCGACCCGTATCCACCGCAGTACTCCACTCCTCCCGACC
89791557 C
66 C
* * *
89791558 GTATCCACCGCAGTACAACACTGCCCCCGACCCGTATCCACCGCAGTACTCTACTCCTC
1 GTATCCACCGCAGCACAACACTACCCCCGACCCGTATCCACCGCAGTACTCCACTCCTC
89791617 ACTCCTCTTA
Statistics
Matches: 49, Mismatches: 10, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
66 49 1.00
ACGTcount: A:0.21, C:0.45, G:0.14, T:0.20
Consensus pattern (66 bp):
GTATCCACCGCAGCACAACACTACCCCCGACCCGTATCCACCGCAGTACTCCACTCCTCCCGACC
C
Found at i:89797352 original size:23 final size:23
Alignment explanation
Indices: 89797322--89797367 Score: 76
Period size: 23 Copynumber: 2.0 Consensus size: 23
89797312 CAAAGGGTTA
89797322 CACGACAATTACTC-GTCATAGTT
1 CACGACAATTAC-CAGTCATAGTT
89797345 CACGACAATTACCAGTCATAGTT
1 CACGACAATTACCAGTCATAGTT
89797368 TACTTTTTTC
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
22 1 0.05
23 21 0.95
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (23 bp):
CACGACAATTACCAGTCATAGTT
Found at i:89802455 original size:153 final size:154
Alignment explanation
Indices: 89802168--89802473 Score: 537
Period size: 153 Copynumber: 2.0 Consensus size: 154
89802158 AAATTTCAAG
89802168 CTTCGATTTAGTCGATTGCATGTGAATTTAGTCGATAGGACTTATGTGAGAAAATTTTGAAATGT
1 CTTCGATTTAGTCGATTGCATGTGAATTTAGTCGATAGGACTTATGTGAGAAAATTTTGAAATGT
* * *
89802233 GATAGGTCAAAGCATAAGGGCCTATTAGTGCATGTTGAAAAAGGGGGGACTTGCATGTCAATTTC
66 GATAGGTCAAAGCATAAGGACCTATTAGTGCATGATGAAAAAGGGGGGACTTGCATGTCAAATTC
89802298 CCCCCCCT-ATTAGTAGTGGCCGA
131 CCCCCCCTAATTAGTAGTGGCCGA
*
89802321 CTTCGATTTAGTCGATTGCATGTGAATTTAGTCGATAGGACTTATGTGAGAAAATTTTTAAATGT
1 CTTCGATTTAGTCGATTGCATGTGAATTTAGTCGATAGGACTTATGTGAGAAAATTTTGAAATGT
89802386 GATAGGTCAAAGCATAAGGACCTATTAGTGCATGAAAT-AAAAAGGGGGGACTTGCATGTCAAAT
66 GATAGGTCAAAGCATAAGGACCTATTAGTGCATG--ATGAAAAAGGGGGGACTTGCATGTCAAAT
89802450 T-CCCCCCCTAATTAGTAGTGGCCG
129 TCCCCCCCCTAATTAGTAGTGGCCG
89802474 GCCATGACAA
Statistics
Matches: 146, Mismatches: 4, Indels: 5
0.94 0.03 0.03
Matches are distributed among these distances:
153 105 0.72
154 40 0.27
155 1 0.01
ACGTcount: A:0.30, C:0.15, G:0.25, T:0.30
Consensus pattern (154 bp):
CTTCGATTTAGTCGATTGCATGTGAATTTAGTCGATAGGACTTATGTGAGAAAATTTTGAAATGT
GATAGGTCAAAGCATAAGGACCTATTAGTGCATGATGAAAAAGGGGGGACTTGCATGTCAAATTC
CCCCCCCTAATTAGTAGTGGCCGA
Found at i:89803850 original size:79 final size:81
Alignment explanation
Indices: 89803714--89803898 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
89803704 TTGAATGATG
*
89803714 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
89803778 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
89803793 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
89803855 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
89803873 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
89803899 AACGAGGAGC
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:89803912 original size:40 final size:40
Alignment explanation
Indices: 89803715--89803898 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
89803705 TGAATGATGT
* * * *
89803715 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
89803755 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
89803795 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
89803833 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
89803874 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
89803899 AACGAGGAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:89803920 original size:79 final size:79
Alignment explanation
Indices: 89803715--89803931 Score: 201
Period size: 79 Copynumber: 2.7 Consensus size: 79
89803705 TGAATGATGT
** * * * **
89803715 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTGACTAAATCCGGGTTAA-ATCCCGAAGGCATT
*
89803778 TGTGCGAGATACTAATT
63 TGTGCGAGATACTAATA
** * *
89803795 CCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
*
89803860 GCGAGTTACT-ATAA
66 GCGAGATACTAAT-A
* * *
89803874 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
89803932 TACGTGATTT
Statistics
Matches: 116, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
78 3 0.03
79 71 0.61
80 42 0.36
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:89811792 original size:39 final size:40
Alignment explanation
Indices: 89811689--89811873 Score: 209
Period size: 40 Copynumber: 4.7 Consensus size: 40
89811679 TTGAATGATG
* * *
89811689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAT
* * *
89811728 ATCCGGACTAAGAT-CTGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
*
89811769 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
*
89811808 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
89811847 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
89811874 AACGAGGAGC
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:89811827 original size:79 final size:81
Alignment explanation
Indices: 89811689--89811873 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
89811679 TTGAATGATG
* *
89811689 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCTGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
89811753 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
89811768 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
89811830 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGATACTATA
* *
89811848 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
89811874 AACGAGGAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGATACTATA
Found at i:89811895 original size:79 final size:79
Alignment explanation
Indices: 89811744--89811906 Score: 197
Period size: 79 Copynumber: 2.1 Consensus size: 79
89811734 ACTAAGATCT
* ** *
89811744 GAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAAT
1 GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
*
89811809 CCGGGTTAAGTCCC
66 CCGGGTTAAATCCC
* *
89811823 GAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTA
1 GAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-CTA
* *
89811886 TATCC-GGTTAAATTCC
63 AATCCGGGTTAAATCCC
89811902 GAAGG
1 GAAGG
89811907 TACGTGATTT
Statistics
Matches: 72, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 45 0.62
80 25 0.35
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (79 bp):
GAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAAAT
CCGGGTTAAATCCC
Found at i:89825806 original size:30 final size:30
Alignment explanation
Indices: 89825772--89825832 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
89825762 TCCTTAATTC
89825772 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
89825802 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
89825832 A
1 A
89825833 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:89834274 original size:54 final size:54
Alignment explanation
Indices: 89834198--89834329 Score: 176
Period size: 54 Copynumber: 2.4 Consensus size: 54
89834188 GTCACTACAA
* * * *
89834198 GGGATTTAGTCTGGACTGGTAATC-CTGAAATCACTTTATGAGTTGATGTTACTG
1 GGGATTTAGCCTGGACTGGTAATCAC-GAAATCACATTATGAGTTGATATTACGG
* * **
89834252 GGGATTTAGCCTAGACTAGTAATCACGGCATCACATTATGAGTTGATATTACGG
1 GGGATTTAGCCTGGACTGGTAATCACGAAATCACATTATGAGTTGATATTACGG
89834306 GGGATTTAGCCTGGACTGGTAATC
1 GGGATTTAGCCTGGACTGGTAATC
89834330 TCGCAATATG
Statistics
Matches: 67, Mismatches: 10, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
54 66 0.99
55 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.33
Consensus pattern (54 bp):
GGGATTTAGCCTGGACTGGTAATCACGAAATCACATTATGAGTTGATATTACGG
Found at i:89842165 original size:13 final size:13
Alignment explanation
Indices: 89842147--89842173 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
89842137 GACGCGAGCC
89842147 ACACGGCCGTGTG
1 ACACGGCCGTGTG
89842160 ACACGGCCGTGTG
1 ACACGGCCGTGTG
89842173 A
1 A
89842174 GACCAGTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.19, C:0.30, G:0.37, T:0.15
Consensus pattern (13 bp):
ACACGGCCGTGTG
Found at i:89842239 original size:21 final size:21
Alignment explanation
Indices: 89842215--89842261 Score: 67
Period size: 21 Copynumber: 2.2 Consensus size: 21
89842205 TTTCAAACTC
* * *
89842215 ATTTTATTTTTGTTTTTATTT
1 ATTTTACTTTTATTTCTATTT
89842236 ATTTTACTTTTATTTCTATTT
1 ATTTTACTTTTATTTCTATTT
89842257 ATTTT
1 ATTTT
89842262 TGAAGTCTCG
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.17, C:0.04, G:0.02, T:0.77
Consensus pattern (21 bp):
ATTTTACTTTTATTTCTATTT
Found at i:89847727 original size:29 final size:29
Alignment explanation
Indices: 89847694--89847767 Score: 96
Period size: 29 Copynumber: 2.6 Consensus size: 29
89847684 GTTGTGAGAT
* *
89847694 TGGCACTAGGTGTGCGAACTTGAAA-TGCA
1 TGGCACTAAGTGTGCG-ACTTGAAAGTACA
* *
89847723 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGACTTGAAAGTACA
89847752 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
89847768 CGGTTGATTA
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
28 6 0.15
29 34 0.85
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGACTTGAAAGTACA
Found at i:89862145 original size:20 final size:18
Alignment explanation
Indices: 89862111--89862150 Score: 62
Period size: 20 Copynumber: 2.1 Consensus size: 18
89862101 TTTTCCTTTT
89862111 CTTTTTCTTTTTCTTTCC
1 CTTTTTCTTTTTCTTTCC
89862129 CTTTTTCCTTCTTTCTTTCC
1 CTTTTT-CTT-TTTCTTTCC
89862149 CT
1 CT
89862151 GCTATTCGTG
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 6 0.30
19 3 0.15
20 11 0.55
ACGTcount: A:0.00, C:0.33, G:0.00, T:0.68
Consensus pattern (18 bp):
CTTTTTCTTTTTCTTTCC
Found at i:89862187 original size:26 final size:26
Alignment explanation
Indices: 89862158--89862211 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
89862148 CCTGCTATTC
89862158 GTGCCTTTCTTTTTCTTTTTATTTAT
1 GTGCCTTTCTTTTTCTTTTTATTTAT
*
89862184 GTGCCTTTCTTTTTCTTTTTCTTTAT
1 GTGCCTTTCTTTTTCTTTTTATTTAT
89862210 GT
1 GT
89862212 TTTATTTCAT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.06, C:0.17, G:0.09, T:0.69
Consensus pattern (26 bp):
GTGCCTTTCTTTTTCTTTTTATTTAT
Found at i:89883716 original size:37 final size:37
Alignment explanation
Indices: 89883666--89883744 Score: 113
Period size: 37 Copynumber: 2.1 Consensus size: 37
89883656 TTATTACGAA
* * *
89883666 GTCTTACCCGGACATAATCTCCACACGAAGTTATCAG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
* *
89883703 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
89883740 GTCTT
1 GTCTT
89883745 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
37 37 1.00
ACGTcount: A:0.27, C:0.32, G:0.18, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCAG
Found at i:89883941 original size:47 final size:47
Alignment explanation
Indices: 89883863--89884031 Score: 230
Period size: 47 Copynumber: 3.6 Consensus size: 47
89883853 CCCTTCGGGA
* * * * * *
89883863 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89883910 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89883957 CTTATCACTTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89884006 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
89884032 CACAATTATC
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
47 61 0.56
49 47 0.44
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:89883983 original size:49 final size:48
Alignment explanation
Indices: 89883863--89884031 Score: 220
Period size: 49 Copynumber: 3.6 Consensus size: 48
89883853 CCCTTCGGGA
* * * * * *
89883863 CTTATCAC-ATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
89883910 CCTGTCAC-ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89883957 CTTATCACTTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC-TATATATACACTTTCACATTCATCACATCGGCCATTAGGC
89884006 CTTATCACATATATATACA--TTCACAT
1 CTTATCAC-TATATATACACTTTCACAT
89884032 CACAATTATC
Statistics
Matches: 109, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
47 52 0.48
49 57 0.52
ACGTcount: A:0.28, C:0.30, G:0.08, T:0.33
Consensus pattern (48 bp):
CTTATCACTATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:89896081 original size:8 final size:8
Alignment explanation
Indices: 89896070--89896103 Score: 50
Period size: 8 Copynumber: 4.2 Consensus size: 8
89896060 AACGCCCCAA
89896070 AAATCTTG
1 AAATCTTG
**
89896078 AAATCTAA
1 AAATCTTG
89896086 AAATCTTG
1 AAATCTTG
89896094 AAATCTTG
1 AAATCTTG
89896102 AA
1 AA
89896104 TTTTTCTTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.12, G:0.09, T:0.32
Consensus pattern (8 bp):
AAATCTTG
Found at i:89896089 original size:16 final size:16
Alignment explanation
Indices: 89896068--89896099 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
89896058 CCAACGCCCC
89896068 AAAAATCTTGAAATCT
1 AAAAATCTTGAAATCT
89896084 AAAAATCTTGAAATCT
1 AAAAATCTTGAAATCT
89896100 TGAATTTTTC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.50, C:0.12, G:0.06, T:0.31
Consensus pattern (16 bp):
AAAAATCTTGAAATCT
Found at i:89897606 original size:29 final size:29
Alignment explanation
Indices: 89897558--89897676 Score: 127
Period size: 29 Copynumber: 4.2 Consensus size: 29
89897548 GTGAGCATGA
* *
89897558 ATAT-AATATGATTTCGGCCTAATGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
89897586 ATATGAATGTGAATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
* *
89897615 ATAAGAATATGAATTGGGCC-AGATGGGTC
1 ATATGAATATGAATTGGGCCTA-ATGGGCC
* * *
89897644 ATTTGAATAAG-ATTGGGCCTAGTGGGCC
1 ATATGAATATGAATTGGGCCTAATGGGCC
89897672 ATATG
1 ATATG
89897677 CTTGTATGTA
Statistics
Matches: 74, Mismatches: 14, Indels: 6
0.79 0.15 0.06
Matches are distributed among these distances:
28 22 0.30
29 52 0.70
ACGTcount: A:0.29, C:0.13, G:0.29, T:0.29
Consensus pattern (29 bp):
ATATGAATATGAATTGGGCCTAATGGGCC
Found at i:89897624 original size:58 final size:57
Alignment explanation
Indices: 89897562--89897674 Score: 147
Period size: 58 Copynumber: 2.0 Consensus size: 57
89897552 GCATGAATAT
* **
89897562 AATATGATTTCGGCCTA-ATGGGCCATATGAATGTGAATTGGGCCTAGTGGGCCATAAG
1 AATATGAATTCGGCC-AGATGGGCCATATGAATAAG-ATTGGGCCTAGTGGGCCATAAG
* * *
89897620 AATATGAATTGGGCCAGATGGGTCATTTGAATAAGATTGGGCCTAGTGGGCCATA
1 AATATGAATTCGGCCAGATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATA
89897675 TGCTTGTATG
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 21 0.44
58 27 0.56
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.27
Consensus pattern (57 bp):
AATATGAATTCGGCCAGATGGGCCATATGAATAAGATTGGGCCTAGTGGGCCATAAG
Found at i:89898537 original size:12 final size:12
Alignment explanation
Indices: 89898517--89898546 Score: 51
Period size: 12 Copynumber: 2.5 Consensus size: 12
89898507 AAGGCTTCCA
*
89898517 TTTTGTTATTAT
1 TTTTATTATTAT
89898529 TTTTATTATTAT
1 TTTTATTATTAT
89898541 TTTTAT
1 TTTTAT
89898547 GCACTGTAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
12 17 1.00
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (12 bp):
TTTTATTATTAT
Found at i:89912279 original size:9 final size:9
Alignment explanation
Indices: 89912267--89912323 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
89912257 TTTGATAAAC
89912267 ATGATATGT
1 ATGATATGT
*
89912276 ATGATATGCAC
1 ATGATATG--T
*
89912287 ATGACATGT
1 ATGATATGT
*
89912296 ATGATATGCAA
1 ATGATATG--T
89912307 ATGATATGT
1 ATGATATGT
89912316 ATGATATG
1 ATGATATG
89912324 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:89912290 original size:20 final size:20
Alignment explanation
Indices: 89912265--89912327 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
89912255 ATTTTGATAA
89912265 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
89912285 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
89912305 AAATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89912325 ACA
1 ACA
89912328 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:89912451 original size:47 final size:47
Alignment explanation
Indices: 89912382--89912479 Score: 171
Period size: 47 Copynumber: 2.1 Consensus size: 47
89912372 AGGAAGTGCA
89912382 AAAGGGCTTATGCCCCAGTTATT-AAAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTT-TGCCCCAGTTATT
89912429 AAAGGGCTTATGCCCCAGTTATTAAAAAAGGGCTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT-AAAAAGGGCTTTGCCCCAGTTATT
89912477 AAA
1 AAA
89912480 AGAGGCTAGG
Statistics
Matches: 49, Mismatches: 0, Indels: 3
0.94 0.00 0.06
Matches are distributed among these distances:
47 23 0.47
48 16 0.33
49 10 0.20
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29
Consensus pattern (47 bp):
AAAGGGCTTATGCCCCAGTTATTAAAAAGGGCTTTGCCCCAGTTATT
Found at i:89912500 original size:25 final size:24
Alignment explanation
Indices: 89912381--89912486 Score: 171
Period size: 23 Copynumber: 4.4 Consensus size: 24
89912371 GAGGAAGTGC
89912381 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89912405 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89912429 -AAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89912452 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
89912477 AAAAGAGGCT
1 AAAAG-GGCT
89912487 AGGCCTCCAT
Statistics
Matches: 78, Mismatches: 0, Indels: 8
0.91 0.00 0.09
Matches are distributed among these distances:
23 28 0.36
24 28 0.36
25 13 0.17
26 9 0.12
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:89912729 original size:31 final size:31
Alignment explanation
Indices: 89912694--89912757 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
89912684 CGTTTACAGT
*
89912694 AAAGGCTTCGGCCCAGTAATATGAAATATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
* **
89912725 AAAGGCTTTGGCCCAGTGTTATGAAAAATGA
1 AAAGGCTTCGGCCCAGTAATATGAAAAATGA
89912756 AA
1 AA
89912758 TATGAAAAGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.39, C:0.14, G:0.23, T:0.23
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATGAAAAATGA
Found at i:89918064 original size:27 final size:28
Alignment explanation
Indices: 89917982--89918076 Score: 120
Period size: 27 Copynumber: 3.4 Consensus size: 28
89917972 GAGATTGGCG
* * * *
89917982 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
89918011 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
89918039 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
89918066 CTGAGTGTGCG
1 CTAAGTGTGCG
89918077 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 23 0.39
28 21 0.36
29 15 0.25
ACGTcount: A:0.25, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:89918087 original size:27 final size:27
Alignment explanation
Indices: 89918007--89918089 Score: 87
Period size: 27 Copynumber: 3.0 Consensus size: 27
89917997 TAAATTGTAC
* * *
89918007 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
89918035 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
89918062 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
89918089 A
1 A
89918090 CTTTTGAATC
Statistics
Matches: 49, Mismatches: 5, Indels: 3
0.86 0.09 0.05
Matches are distributed among these distances:
27 29 0.59
28 20 0.41
ACGTcount: A:0.29, C:0.12, G:0.27, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:89921594 original size:40 final size:40
Alignment explanation
Indices: 89921549--89921780 Score: 270
Period size: 40 Copynumber: 5.8 Consensus size: 40
89921539 ATAACCACAA
* * * *
89921549 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
89921589 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
89921629 GCACAAATGCCTTTGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
89921669 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
89921709 ACACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* *
89921749 GCATAAATGCCTTCGGGACTTAGCCCGGATAT
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATAT
89921781 CATTCAAATG
Statistics
Matches: 163, Mismatches: 26, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
39 4 0.02
40 152 0.93
41 7 0.04
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:89921619 original size:80 final size:80
Alignment explanation
Indices: 89921529--89921780 Score: 303
Period size: 80 Copynumber: 3.2 Consensus size: 80
89921519 TCTTCGGAAT
* * * * * * *
89921529 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGT-ATAGCAACTTGCA
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCA
89921592 CAAATGCCTTCGGGTC
65 CAAATGCCTTCGGGTC
* ** *
89921608 TTAGCCCGGATATATCAACTCGCACAAATGCCTTTGGGTCTTAGCCCGGATAAAATCACTAGCAC
1 TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
*
89921673 AATTGCCTTCGGGTC
66 AAATGCCTTCGGGTC
* * * *
89921688 TTAACCCGGGTATAGCAACTCA-CACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCA
1 TTAGCCCGGATATAACAAC-AAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCA
* *
89921752 TAAATGCCTTCGGGAC
65 CAAATGCCTTCGGGTC
89921768 TTAGCCCGGATAT
1 TTAGCCCGGATAT
89921781 CATTCAAATG
Statistics
Matches: 147, Mismatches: 23, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
79 4 0.03
80 140 0.95
81 3 0.02
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (80 bp):
TTAGCCCGGATATAACAACAAGCACAAATGCCTTCGGGTCTTAGCCCGGATAAAATCACTAGCAC
AAATGCCTTCGGGTC
Found at i:89921757 original size:120 final size:120
Alignment explanation
Indices: 89921520--89921779 Score: 389
Period size: 120 Copynumber: 2.2 Consensus size: 120
89921510 ACCCAAGTTT
* * *
89921520 CTTCGGAATTTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
** * *
89921584 AACTTGCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTCGCACAAATGC
66 AACTCACACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
* * * *
89921639 CTTTGGGTCTTAGCCCGGATAAAATCACTAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
1 CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
*
89921704 AACTCACACAAATGCCTTCGGGTCTTAGCCCGGATAAAATC-ACTAGCATAAATGC
66 AACTCACACAAATGCCTTCGGGTCTTAGCCCGGAT-AAATCAACTAGCACAAATGC
89921759 CTTCGGGACTTAGCCCGGATA
1 CTTCGGGACTTAGCCCGGATA
89921780 TCATTCAAAT
Statistics
Matches: 125, Mismatches: 14, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
119 9 0.07
120 112 0.90
121 4 0.03
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (120 bp):
CTTCGGGACTTAGCCCGGATAAAACCACAAGCACAATTGCCTTCGGGTCTTAACCCGGGTATAGC
AACTCACACAAATGCCTTCGGGTCTTAGCCCGGATAAATCAACTAGCACAAATGC
Found at i:89926938 original size:9 final size:9
Alignment explanation
Indices: 89926926--89926982 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
89926916 TTTGATAAAC
89926926 ATGATATGT
1 ATGATATGT
*
89926935 ATGATATGCAC
1 ATGATATG--T
*
89926946 ATGACATGT
1 ATGATATGT
*
89926955 ATGATATGCAA
1 ATGATATG--T
89926966 ATGATATGT
1 ATGATATGT
89926975 ATGATATG
1 ATGATATG
89926983 CACACGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.37, C:0.07, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:89926949 original size:20 final size:20
Alignment explanation
Indices: 89926924--89926986 Score: 108
Period size: 20 Copynumber: 3.1 Consensus size: 20
89926914 ATTTTGATAA
89926924 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
89926944 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
*
89926964 AAATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
89926984 ACA
1 ACA
89926987 CGAGATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
20 39 1.00
ACGTcount: A:0.38, C:0.11, G:0.19, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:89927067 original size:24 final size:24
Alignment explanation
Indices: 89927040--89927232 Score: 327
Period size: 24 Copynumber: 8.0 Consensus size: 24
89927030 GAGGAAGTGC
89927040 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89927064 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89927088 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89927112 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89927136 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89927160 AAAAGGGCTTATGCCCCAGTTATT
1 AAAAGGGCTTATGCCCCAGTTATT
89927184 AAAAAAGGGCTT-TGCCCCAGTTATT
1 --AAAAGGGCTTATGCCCCAGTTATT
*
89927209 AAAAGAGGC-TAGGCCTCCAGTTAT
1 AAAAG-GGCTTATGCC-CCAGTTAT
89927233 ATGATAAAGC
Statistics
Matches: 163, Mismatches: 1, Indels: 9
0.94 0.01 0.05
Matches are distributed among these distances:
23 6 0.04
24 126 0.77
25 21 0.13
26 10 0.06
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (24 bp):
AAAAGGGCTTATGCCCCAGTTATT
Found at i:89927480 original size:31 final size:31
Alignment explanation
Indices: 89927427--89927487 Score: 77
Period size: 31 Copynumber: 2.0 Consensus size: 31
89927417 GTTTACAGTA
* * *
89927427 AAGGCTTCGGCTCAGTAATATGAAATATGAG
1 AAGGCTTCAGCCCAGTAATATGAAAAATGAG
**
89927458 AAGGCTTCAGCCCAGTGTTATGAAAAATGA
1 AAGGCTTCAGCCCAGTAATATGAAAAATGA
89927488 AATATGAAAA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.25
Consensus pattern (31 bp):
AAGGCTTCAGCCCAGTAATATGAAAAATGAG
Found at i:89933060 original size:25 final size:25
Alignment explanation
Indices: 89933026--89933075 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
89933016 GCTTTGTGAG
89933026 ACCGAGTTTTTCACCTTGGGGTGCT
1 ACCGAGTTTTTCACCTTGGGGTGCT
89933051 ACCGAGTTTTTCACCTTGGGGTGCT
1 ACCGAGTTTTTCACCTTGGGGTGCT
89933076 CCTGTGTTAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.12, C:0.24, G:0.28, T:0.36
Consensus pattern (25 bp):
ACCGAGTTTTTCACCTTGGGGTGCT
Found at i:89945276 original size:30 final size:30
Alignment explanation
Indices: 89945224--89945280 Score: 73
Period size: 30 Copynumber: 1.9 Consensus size: 30
89945214 TGATTTGAGT
*
89945224 TGATGAGCATGTGATGTTTGTGTATGATAGA
1 TGATGAGCATGTGATGTATGTGT-TGATAGA
89945255 TGAT-AGCATGTGAATG-ATGTGTTGAT
1 TGATGAGCATGTG-ATGTATGTGTTGAT
89945281 GTCTTGGTTG
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
29 4 0.17
30 13 0.54
31 7 0.29
ACGTcount: A:0.26, C:0.04, G:0.32, T:0.39
Consensus pattern (30 bp):
TGATGAGCATGTGATGTATGTGTTGATAGA
Found at i:89961701 original size:59 final size:60
Alignment explanation
Indices: 89961588--89961719 Score: 173
Period size: 59 Copynumber: 2.2 Consensus size: 60
89961578 TTCAAAAATA
* *
89961588 ATATTATTTTAAT-AGTTTAATATTAAATTAAATTTAATGTTTATCTTGTGATAAACATT
1 ATATTATTTTAATAAGTTTAATATTAAATTAAATCTAATATTTATCTTGTGATAAACATT
* *
89961647 CA-ATTATTTTAATAAGATTTAATATTAAATTTAATCTAATATTTATC-T-TGATAAATATT
1 -ATATTATTTTAATAAG-TTTAATATTAAATTAAATCTAATATTTATCTTGTGATAAACATT
*
89961706 ATATTAATTTAATA
1 ATATTATTTTAATA
89961720 TTAAATTAAT
Statistics
Matches: 64, Mismatches: 5, Indels: 7
0.84 0.07 0.09
Matches are distributed among these distances:
58 1 0.02
59 32 0.50
60 4 0.06
61 27 0.42
ACGTcount: A:0.42, C:0.04, G:0.05, T:0.50
Consensus pattern (60 bp):
ATATTATTTTAATAAGTTTAATATTAAATTAAATCTAATATTTATCTTGTGATAAACATT
Found at i:89972075 original size:20 final size:19
Alignment explanation
Indices: 89972019--89972072 Score: 63
Period size: 20 Copynumber: 2.8 Consensus size: 19
89972009 AATTTAATAC
* * *
89972019 TTATCTTAATAGTATTTTA
1 TTATCTTAATATTAATTGA
*
89972038 TTATTTTAATATTGAATTGA
1 TTATCTTAATATT-AATTGA
89972058 TTATCTTAATATTAA
1 TTATCTTAATATTAA
89972073 ATTTAATTTA
Statistics
Matches: 29, Mismatches: 5, Indels: 2
0.81 0.14 0.06
Matches are distributed among these distances:
19 13 0.45
20 16 0.55
ACGTcount: A:0.35, C:0.04, G:0.06, T:0.56
Consensus pattern (19 bp):
TTATCTTAATATTAATTGA
Found at i:89977824 original size:43 final size:42
Alignment explanation
Indices: 89977777--89977867 Score: 103
Period size: 42 Copynumber: 2.1 Consensus size: 42
89977767 CTAGACGTAT
* * *
89977777 TCTTACATGTAACCAAATATCGATGCCACTGTCCCAGACA-AGG
1 TCTTACACGAAACCAAATAT-GATGCCAATGTCCCAGACATA-G
* * *
89977820 TCTTACACGAAATCATATATGATGTCAATGTCCCAGACATAG
1 TCTTACACGAAACCAAATATGATGCCAATGTCCCAGACATAG
89977862 TCTTAC
1 TCTTAC
89977868 GCGTAAATCA
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
42 24 0.59
43 17 0.41
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.27
Consensus pattern (42 bp):
TCTTACACGAAACCAAATATGATGCCAATGTCCCAGACATAG
Found at i:89979363 original size:34 final size:34
Alignment explanation
Indices: 89979317--89979386 Score: 104
Period size: 34 Copynumber: 2.1 Consensus size: 34
89979307 AACAGTCCAG
*
89979317 TATCAGTATGGGCCTTAGCCCATTACAATAACAA
1 TATCAGTATGGGCCTAAGCCCATTACAATAACAA
* * *
89979351 TATCAGTGTGGGCCTAAGCCCATTATAGTAACAA
1 TATCAGTATGGGCCTAAGCCCATTACAATAACAA
89979385 TA
1 TA
89979387 ACAGAAATGC
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.27
Consensus pattern (34 bp):
TATCAGTATGGGCCTAAGCCCATTACAATAACAA
Found at i:89989019 original size:28 final size:28
Alignment explanation
Indices: 89988979--89989042 Score: 119
Period size: 28 Copynumber: 2.3 Consensus size: 28
89988969 GTGCATGGTT
*
89988979 ATGTGTGAATGTTTCTTTTGAATGCCAA
1 ATGTGTTAATGTTTCTTTTGAATGCCAA
89989007 ATGTGTTAATGTTTCTTTTGAATGCCAA
1 ATGTGTTAATGTTTCTTTTGAATGCCAA
89989035 ATGTGTTA
1 ATGTGTTA
89989043 TACCATGAAT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.25, C:0.09, G:0.20, T:0.45
Consensus pattern (28 bp):
ATGTGTTAATGTTTCTTTTGAATGCCAA
Found at i:89990275 original size:44 final size:43
Alignment explanation
Indices: 89990133--89990291 Score: 137
Period size: 43 Copynumber: 3.7 Consensus size: 43
89990123 AGCTCATACA
* ** *
89990133 ATGCCAATGTCCCAGATGTGGTCTTACATGT-AATCAAACATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAA-ATCG
* * * *
89990176 ATGCC-ACTGTCTCAGACAGGGTCTTACAC-AAAATC-ATATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATCAAAAT-CG
* *
89990218 ATGCCAATGTCCCAAACATGGTCTTACACGTAAATCACAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCA-AAATCG
* **
89990262 ATGCCAACATCCCAGATGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
89990292 ACAACACATA
Statistics
Matches: 90, Mismatches: 19, Indels: 13
0.74 0.16 0.11
Matches are distributed among these distances:
41 2 0.02
42 27 0.30
43 31 0.34
44 27 0.30
45 3 0.03
ACGTcount: A:0.32, C:0.26, G:0.17, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATCAAAATCG
Found at i:89990289 original size:86 final size:85
Alignment explanation
Indices: 89990128--89990290 Score: 197
Period size: 85 Copynumber: 1.9 Consensus size: 85
89990118 TCATAAGCTC
* ** * * *
89990128 ATACAATGCCAATGTCCCAGATGTGGTCTTACATGTAATCAAACATCGATGCCACTGTCTCAGAC
1 ATACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAACATCGATGCCACTATCCCAGAC
89990193 AGGGTCTTACACAAAATCAT
66 AGGGTCTTACACAAAATCAT
*
89990213 ATACGATGCCAATGTCCCAAACATGGTCTTACACGTAAATCACAA-ATCGATGCCAAC-ATCCCA
1 ATACAATGCCAATGTCCCAAACATGGTCTTACACGT-AATCA-AACATCGATGCC-ACTATCCCA
*
89990276 GA-TGTGGTCTTACAC
63 GACAG-GGTCTTACAC
89990291 GACAACACAT
Statistics
Matches: 66, Mismatches: 8, Indels: 7
0.81 0.10 0.09
Matches are distributed among these distances:
85 32 0.48
86 30 0.45
87 4 0.06
ACGTcount: A:0.33, C:0.26, G:0.16, T:0.25
Consensus pattern (85 bp):
ATACAATGCCAATGTCCCAAACATGGTCTTACACGTAATCAAACATCGATGCCACTATCCCAGAC
AGGGTCTTACACAAAATCAT
Found at i:89992040 original size:42 final size:42
Alignment explanation
Indices: 89991981--89992066 Score: 163
Period size: 42 Copynumber: 2.0 Consensus size: 42
89991971 AAACGGAGTA
89991981 AGCATTACATGCTTAGTAAGTTCATATAACGGTAACTAAACT
1 AGCATTACATGCTTAGTAAGTTCATATAACGGTAACTAAACT
*
89992023 AGCATTACATGCTTAGTAAGTTCATATAACTGTAACTAAACT
1 AGCATTACATGCTTAGTAAGTTCATATAACGGTAACTAAACT
89992065 AG
1 AG
89992067 TCTCGTTATT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
42 43 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.31
Consensus pattern (42 bp):
AGCATTACATGCTTAGTAAGTTCATATAACGGTAACTAAACT
Found at i:89992529 original size:58 final size:58
Alignment explanation
Indices: 89992409--89992531 Score: 133
Period size: 58 Copynumber: 2.1 Consensus size: 58
89992399 TGTATTACAG
** * * * *
89992409 GATTACCAGTCCAAGCTAAATCCTTTTATGTAACGTATGCTCAGAAGAGCTCAATTAG
1 GATTACCAGTCCAAGCTAAATCCTAATATGTAACATATGCTCAGAAGAGATCAATCAA
* * *
89992467 GATTACTAGTCCAAGCTAAATCCTAAT-TGTAACATATGCTCTAG-AGGGATTATATCAA
1 GATTACCAGTCCAAGCTAAATCCTAATATGTAACATATGCTC-AGAAGAGATCA-ATCAA
89992525 GATTACC
1 GATTACC
89992532 CGTTCGGGCT
Statistics
Matches: 53, Mismatches: 10, Indels: 4
0.79 0.15 0.06
Matches are distributed among these distances:
57 18 0.34
58 35 0.66
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30
Consensus pattern (58 bp):
GATTACCAGTCCAAGCTAAATCCTAATATGTAACATATGCTCAGAAGAGATCAATCAA
Found at i:90011373 original size:27 final size:27
Alignment explanation
Indices: 90011334--90011446 Score: 140
Period size: 27 Copynumber: 4.2 Consensus size: 27
90011324 GGTCGTTAAG
* *
90011334 ACCCTCTATTTGTAAAATTACTAAAAT
1 ACCCTCAATTTGTAAAATTACTGAAAT
***
90011361 ACCCTCGGGTTGTAAAATTA-TCGAAAT
1 ACCCTCAATTTGTAAAATTACT-GAAAT
*
90011388 ACCC-CTAATTTGTGAAATTACTGAAAT
1 ACCCTC-AATTTGTAAAATTACTGAAAT
90011415 ACCCTCAATTTGTAAAATTACTGAAAT
1 ACCCTCAATTTGTAAAATTACTGAAAT
90011442 ACCCT
1 ACCCT
90011447 TGTAGCGTAA
Statistics
Matches: 73, Mismatches: 9, Indels: 8
0.81 0.10 0.09
Matches are distributed among these distances:
26 2 0.03
27 69 0.95
28 2 0.03
ACGTcount: A:0.37, C:0.20, G:0.10, T:0.33
Consensus pattern (27 bp):
ACCCTCAATTTGTAAAATTACTGAAAT
Found at i:90011471 original size:27 final size:26
Alignment explanation
Indices: 90011426--90011516 Score: 83
Period size: 27 Copynumber: 3.4 Consensus size: 26
90011416 CCCTCAATTT
* *
90011426 GTAAAATTACTGAAATACCCTTGTAG
1 GTAAAATGACTGTAATACCCTTGTAG
** **
90011452 CGTAAAATGACTGTTGTACCCCAGTAAG
1 -GTAAAATGACTGTAATACCCTTGT-AG
* *
90011480 GTAAAATGATTGTAATAGCCTTGTATG
1 GTAAAATGACTGTAATACCCTTGTA-G
90011507 GTAAAATGAC
1 GTAAAATGAC
90011517 GATTATGCCC
Statistics
Matches: 49, Mismatches: 13, Indels: 4
0.74 0.20 0.06
Matches are distributed among these distances:
26 1 0.02
27 46 0.94
28 2 0.04
ACGTcount: A:0.36, C:0.14, G:0.20, T:0.30
Consensus pattern (26 bp):
GTAAAATGACTGTAATACCCTTGTAG
Found at i:90011691 original size:27 final size:26
Alignment explanation
Indices: 90011652--90011735 Score: 107
Period size: 27 Copynumber: 3.2 Consensus size: 26
90011642 TGGAGGAAGT
*
90011652 ACTGTACTGGTGGCTATGTCACATTC
1 ACTGTACTGGTGGCTATGCCACATTC
*
90011678 ACTGTTACTGGTGGCTACGCCACAATT-
1 ACTG-TACTGGTGGCTATGCCAC-ATTC
*
90011705 ACTGATACTGGTGGCTTTGCCACATTC
1 ACTG-TACTGGTGGCTATGCCACATTC
90011732 ACTG
1 ACTG
90011736 GTTCTGGCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
26 7 0.14
27 40 0.80
28 3 0.06
ACGTcount: A:0.20, C:0.25, G:0.23, T:0.32
Consensus pattern (26 bp):
ACTGTACTGGTGGCTATGCCACATTC
Found at i:90011742 original size:27 final size:27
Alignment explanation
Indices: 90011658--90011757 Score: 96
Period size: 27 Copynumber: 3.7 Consensus size: 27
90011648 AAGTACTGTA
*
90011658 CTGGTGGCTATGTCACATTCACT-GTT
1 CTGGTGGCTATGCCACATTCACTGGTT
* * *
90011684 ACTGGTGGCTACGCCACAATT-ACTGATA
1 -CTGGTGGCTATGCCAC-ATTCACTGGTT
*
90011712 CTGGTGGCTTTGCCACATTCACTGGTT
1 CTGGTGGCTATGCCACATTCACTGGTT
** *
90011739 CTGGCAGCTATGCTACATT
1 CTGGTGGCTATGCCACATT
90011758 ATTATTACTG
Statistics
Matches: 58, Mismatches: 12, Indels: 6
0.76 0.16 0.08
Matches are distributed among these distances:
26 3 0.05
27 51 0.88
28 4 0.07
ACGTcount: A:0.19, C:0.25, G:0.23, T:0.33
Consensus pattern (27 bp):
CTGGTGGCTATGCCACATTCACTGGTT
Found at i:90011925 original size:33 final size:33
Alignment explanation
Indices: 90011888--90011967 Score: 106
Period size: 33 Copynumber: 2.4 Consensus size: 33
90011878 ATTTCATTAC
*
90011888 ATTGTTCTGATACTATATAGGGCTAAGGCCCAA
1 ATTGTACTGATACTATATAGGGCTAAGGCCCAA
* * * *
90011921 ATTGTACTGTTATTGTATAGGGCTAAGGCCCAG
1 ATTGTACTGATACTATATAGGGCTAAGGCCCAA
*
90011954 ACTGTACTGATACT
1 ATTGTACTGATACT
90011968 GAATAAGGCT
Statistics
Matches: 39, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 39 1.00
ACGTcount: A:0.28, C:0.17, G:0.23, T:0.33
Consensus pattern (33 bp):
ATTGTACTGATACTATATAGGGCTAAGGCCCAA
Found at i:90019590 original size:11 final size:11
Alignment explanation
Indices: 90019574--90019598 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
90019564 ATCGTTAGGG
90019574 TTTCTTTTCTT
1 TTTCTTTTCTT
90019585 TTTCTTTTCTT
1 TTTCTTTTCTT
90019596 TTT
1 TTT
90019599 TAGTTTAGGT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTCTTTTCTT
Found at i:90019650 original size:25 final size:23
Alignment explanation
Indices: 90019584--90019650 Score: 62
Period size: 25 Copynumber: 2.7 Consensus size: 23
90019574 TTTCTTTTCT
* * *
90019584 TTTTCTTTTCTTTTTTAGTTTAGG
1 TTTTATTTT-TTTTTTAGGTTAGA
90019608 TTTTATCTTTTATTTTTAGGTTAGA
1 TTTTAT-TTTT-TTTTTAGGTTAGA
90019633 TTTTAGTTTTTTTGTTTA
1 TTTTA-TTTTTTT-TTTA
90019651 CTTTCTTCCT
Statistics
Matches: 36, Mismatches: 3, Indels: 7
0.78 0.07 0.15
Matches are distributed among these distances:
24 8 0.22
25 27 0.75
26 1 0.03
ACGTcount: A:0.13, C:0.04, G:0.12, T:0.70
Consensus pattern (23 bp):
TTTTATTTTTTTTTTAGGTTAGA
Found at i:90023404 original size:25 final size:25
Alignment explanation
Indices: 90023372--90023490 Score: 123
Period size: 25 Copynumber: 4.8 Consensus size: 25
90023362 GTTTAGATCC
90023372 ACAGCTCATGTGAGCATACCGATTT
1 ACAGCTCATGTGAGCATACCGATTT
* * **
90023397 ATAGCTCATGAGAGCATGTCGATTT
1 ACAGCTCATGTGAGCATACCGATTT
* ** *
90023422 ATAGCTCATGAAAGCATACCGATCT
1 ACAGCTCATGTGAGCATACCGATTT
*
90023447 ACAGCTCGA-GTGAGCATACCGATTC
1 ACAGCTC-ATGTGAGCATACCGATTT
* *
90023472 ACAGCTCGTATGAGCATAC
1 ACAGCTCATGTGAGCATAC
90023491 ATGTATAGGA
Statistics
Matches: 77, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
25 76 0.99
26 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.21, T:0.25
Consensus pattern (25 bp):
ACAGCTCATGTGAGCATACCGATTT
Found at i:90026419 original size:40 final size:40
Alignment explanation
Indices: 90026362--90026584 Score: 283
Period size: 40 Copynumber: 5.6 Consensus size: 40
90026352 TCGAATGATG
* *
90026362 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TATA
* * *
90026402 TCCGGACTAAGAT-CCGAAG-GCATTTGTGCAAGTTGATATA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCTAG-TGATATA
*
90026442 TCCGGGCTAAGCCCCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
*
90026482 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
**
90026522 TCCGGGCTAAGTTTCGAAGAGCATTCGTGCTAGTGATATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
* *
90026562 TCCGTGCTAAATCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCA
90026585 ATCATGCTGG
Statistics
Matches: 162, Mismatches: 16, Indels: 10
0.86 0.09 0.05
Matches are distributed among these distances:
40 140 0.86
41 22 0.14
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATATA
Found at i:90030977 original size:47 final size:47
Alignment explanation
Indices: 90030903--90031995 Score: 1587
Period size: 47 Copynumber: 23.3 Consensus size: 47
90030893 TTGAATAAAA
*
90030903 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * * *
90030950 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90030997 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * * *
90031044 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031091 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * * *
90031138 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031185 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * * *
90031232 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031279 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * * *
90031326 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031373 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * * *
90031420 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031467 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * * *
90031514 GTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031561 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
90031608 GTGAACACGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031655 GTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
** * **
90031702 GTGAACATGCATATATGACATAAGGCCGAATGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
*
90031749 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
90031796 GTGAACACGTATATGTGTGATAAGGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * *
90031843 GTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAA
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* *
90031890 GTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
* * * *
90031937 GTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAAT
1 GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
90031984 GTGAA-A-GTGTAT
1 GTGAACATGTGTAT
90031996 AAATGTGATA
Statistics
Matches: 926, Mismatches: 120, Indels: 2
0.88 0.11 0.00
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 919 0.99
ACGTcount: A:0.32, C:0.12, G:0.31, T:0.25
Consensus pattern (47 bp):
GTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAT
Found at i:90032007 original size:94 final size:94
Alignment explanation
Indices: 90030900--90031988 Score: 1926
Period size: 94 Copynumber: 11.6 Consensus size: 94
90030890 TAATTGAATA
90030900 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
90030965 TGAGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
90030994 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
90031059 TGAGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
90031088 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
90031153 TGAGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
90031182 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
90031247 TGAGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
90031276 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
90031341 TGAGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
90031370 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
90031435 TGAGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
90031464 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
90031529 TGAGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
* * *
90031558 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACACGTATATG
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
*
90031623 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
90031652 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
*
90031717 TGACATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
* * * * * *
90031746 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATGAAAGTGAACACGTATATG
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
*
90031811 TGTGATAAGGCCGAATGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
* ** * * ** *
90031840 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATGAAAGTGAACAGGTGTATG
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
* *
90031905 TGTGATAAGGCCGAGTGGCCAATGTGATG
66 TGAGATAAGGCCGAATGGCCAATGTGATG
* * * * * *
90031934 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAA
1 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAA
90031989 AGTGTATAAA
Statistics
Matches: 964, Mismatches: 31, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
94 964 1.00
ACGTcount: A:0.33, C:0.12, G:0.31, T:0.25
Consensus pattern (94 bp):
AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATGAATGTGAACATGCATATA
TGAGATAAGGCCGAATGGCCAATGTGATG
Found at i:90032182 original size:37 final size:37
Alignment explanation
Indices: 90032126--90032205 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
90032116 CCGGGCTCTA
* * *
90032126 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
90032163 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
90032200 AAGACT
1 AAGACT
90032206 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:90039575 original size:40 final size:40
Alignment explanation
Indices: 90039531--90039672 Score: 160
Period size: 40 Copynumber: 3.5 Consensus size: 40
90039521 ATAATTCGGT
* * * *
90039531 TATGTACAGCACTCAGTGTGTGATTCAAGATAGCTTCAAC
1 TATGTATAGCACTTAGTGTGAGATTCAAGATAGCTTCAGC
* * *
90039571 TATGTATAGCACTTAGTGTGCGATTCGAGATAACTTCAGC
1 TATGTATAGCACTTAGTGTGAGATTCAAGATAGCTTCAGC
* *
90039611 TATGTATGGCACTTAGTGTGCGAGATTGAA-ATAGCTTCAGC
1 TATGTATAGCACTTAGTGT--GAGATTCAAGATAGCTTCAGC
*
90039652 TATGTATTGGCACTTAGTGTG
1 TATGTA-TAGCACTTAGTGTG
90039673 CGAGAATTCA
Statistics
Matches: 88, Mismatches: 11, Indels: 6
0.84 0.10 0.06
Matches are distributed among these distances:
40 53 0.60
41 16 0.18
42 19 0.22
ACGTcount: A:0.27, C:0.16, G:0.24, T:0.33
Consensus pattern (40 bp):
TATGTATAGCACTTAGTGTGAGATTCAAGATAGCTTCAGC
Found at i:90039673 original size:42 final size:42
Alignment explanation
Indices: 90039552--90039677 Score: 170
Period size: 40 Copynumber: 3.0 Consensus size: 42
90039542 CTCAGTGTGT
* *
90039552 GATTC-AAGATAGCTTCAACTATGTATAGCACTTAGTGTGC--
1 GATTCGAA-ATAGCTTCAGCTATGTATGGCACTTAGTGTGCGA
* *
90039592 GATTCGAGATAACTTCAGCTATGTATGGCACTTAGTGTGCGA
1 GATTCGAAATAGCTTCAGCTATGTATGGCACTTAGTGTGCGA
90039634 GATT-GAAATAGCTTCAGCTATGTATTGGCACTTAGTGTGCGA
1 GATTCGAAATAGCTTCAGCTATGTA-TGGCACTTAGTGTGCGA
90039676 GA
1 GA
90039678 ATTCAAGTAT
Statistics
Matches: 76, Mismatches: 6, Indels: 6
0.86 0.07 0.07
Matches are distributed among these distances:
40 34 0.45
41 19 0.25
42 23 0.30
ACGTcount: A:0.28, C:0.16, G:0.25, T:0.32
Consensus pattern (42 bp):
GATTCGAAATAGCTTCAGCTATGTATGGCACTTAGTGTGCGA
Found at i:90044972 original size:44 final size:43
Alignment explanation
Indices: 90044919--90045013 Score: 102
Period size: 43 Copynumber: 2.2 Consensus size: 43
90044909 ATGGAATTAT
* *
90044919 GTGTGCGATACTGATATAAATTCGGTTTAATATAA-TGGCACTAA
1 GTGTACGATACTGATATAAATTCGG-CTAAT-TAATTGGCACTAA
* ** **
90044963 GTGTACGATATTTTTATAGCTTCGGCTAATTAATTGGCACTAA
1 GTGTACGATACTGATATAAATTCGGCTAATTAATTGGCACTAA
90045006 GTGTACGA
1 GTGTACGA
90045014 GTTCATTGAA
Statistics
Matches: 43, Mismatches: 7, Indels: 3
0.81 0.13 0.06
Matches are distributed among these distances:
42 3 0.07
43 21 0.49
44 19 0.44
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.36
Consensus pattern (43 bp):
GTGTACGATACTGATATAAATTCGGCTAATTAATTGGCACTAA
Found at i:90049490 original size:40 final size:40
Alignment explanation
Indices: 90049432--90049582 Score: 196
Period size: 40 Copynumber: 3.7 Consensus size: 40
90049422 TTGACGACAA
* *
90049432 TTCGGTTATGTACGGCACTTAGTGTGCGATTCAAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
* * *
90049472 TTCGGCTATGTATAGCACTTAGTGTGCGACTCGAGATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
*
90049512 TTCGGCTATGTATGGCACTTAGTGTGCGAGATTGAA-ATAGC
1 TTCGGCTATGTATGGCACTTAGTGTGC--GATTCAAGATAGC
* *
90049553 TTCGGCTATGTATTGGAACTTAATGTGCGA
1 TTCGGCTATGTA-TGGCACTTAGTGTGCGA
90049583 GAATTTGAGT
Statistics
Matches: 97, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
40 63 0.65
41 17 0.18
42 17 0.18
ACGTcount: A:0.23, C:0.17, G:0.28, T:0.32
Consensus pattern (40 bp):
TTCGGCTATGTATGGCACTTAGTGTGCGATTCAAGATAGC
Found at i:90053952 original size:94 final size:94
Alignment explanation
Indices: 90053712--90054072 Score: 316
Period size: 94 Copynumber: 3.9 Consensus size: 94
90053702 GATATAGTGT
* * * * * *
90053712 CGATGCCAAGTCCTAGACATGGTCTTACACTAGCTCTCATA-TACGCGTGCTGATGCAT-ATCCT
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTATCATAGTA--TG-GCTGATGCATGTTCC-
*
90053775 AGACATGTCTTACACTAGCA--CAACTCT-TAGC
62 AGACATGTCTTACACTAGCACTCATCTCTGT-GC
* * *
90053806 CGATG-CATGTCCCAAACAT-GTCTTATACT-GACTATC-TCTGTCGA-GGCCGATGCATGTTCC
1 CGATGCCATGTCCCAAACATGGTCTTACACTAG-CTATCAT-AGT--ATGGCTGATGCATGTTCC
*
90053866 AGACATGTCTTACACTGGCACTCATCTCTGTGC
62 AGACATGTCTTACACTAGCACTCATCTCTGTGC
* * *
90053899 CGTTGCCATGTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCATG-TCTCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTATCATAGTATGGCTGATGCATGTTC-CAGA
* * *
90053963 CATGTCTTACACTAGCCCTCGTCT-GGATGC
65 CATGTCTTACACTAGCACTCATCTCTG-TGC
* * * * * *
90053993 TGATGCCATGTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGG-TCGAAGCATGTCCCAGA
1 CGATGCCATGTCCCAAACATGGTCTTACACTAGCTATCATAGTATGGCT-GATGCATGTTCCAGA
90054057 CATGTCTTACACTAGC
65 CATGTCTTACACTAGC
90054073 GCACAAATCA
Statistics
Matches: 221, Mismatches: 28, Indels: 36
0.78 0.10 0.13
Matches are distributed among these distances:
91 30 0.14
92 17 0.08
93 29 0.13
94 125 0.57
95 18 0.08
96 2 0.01
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (94 bp):
CGATGCCATGTCCCAAACATGGTCTTACACTAGCTATCATAGTATGGCTGATGCATGTTCCAGAC
ATGTCTTACACTAGCACTCATCTCTGTGC
Found at i:90053956 original size:47 final size:46
Alignment explanation
Indices: 90053721--90054072 Score: 195
Period size: 47 Copynumber: 7.5 Consensus size: 46
90053711 TCGATGCCAA
* * *
90053721 GTCCTAGACATGGTCTTACACTAGCTCTCATA-TACGCGTGCTGATGCAT
1 GTCCCAGACAT-GTCTTACACTAGCTATCATAGTA--TG-GCTGATGCAT
* * * * * *
90053770 ATCCTAGACATGTCTTACACTAGC-A-CA-ACTCTTAGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAGCTATCATAGT-ATGGCTGATGCAT
* * * *
90053814 GTCCCAAACATGTCTTATACT-GACTATC-TCTGTCGA-GGCCGATGCAT
1 GTCCCAGACATGTCTTACACTAG-CTATCAT-AGT--ATGGCTGATGCAT
* * * * * *
90053861 GTTCCAGACATGTCTTACACTGGC-ACTCAT-CTCTGTGCCGTTGCCAT
1 GTCCCAGACATGTCTTACACTAGCTA-TCATAGTATG-GCTGATG-CAT
*
90053908 GTCCCAGACATGGTCTTACACTGGCTATCATAGTATGGCTGATGCAT
1 GTCCCAGACAT-GTCTTACACTAGCTATCATAGTATGGCTGATGCAT
* ** * * *
90053955 GTCTCAGACATGTCTTACACTAGCCCTCGTCTGGAT-GCTGATGCCAT
1 GTCCCAGACATGTCTTACACTAGCTATCAT-AGTATGGCTGATG-CAT
* * * * *
90054002 GTCCCAAACATGGTCTTACACTAGCTCTCATAATGTGG-TCGAAGCAT
1 GTCCCAGACAT-GTCTTACACTAGCTATCATAGTATGGCT-GATGCAT
90054049 GTCCCAGACATGTCTTACACTAGC
1 GTCCCAGACATGTCTTACACTAGC
90054073 GCACAAATCA
Statistics
Matches: 238, Mismatches: 43, Indels: 47
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.00
44 27 0.11
45 3 0.01
46 47 0.20
47 88 0.37
48 58 0.24
49 14 0.06
ACGTcount: A:0.23, C:0.28, G:0.19, T:0.29
Consensus pattern (46 bp):
GTCCCAGACATGTCTTACACTAGCTATCATAGTATGGCTGATGCAT
Found at i:90054449 original size:30 final size:30
Alignment explanation
Indices: 90054408--90054465 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
90054398 AAATTCACAT
*
90054408 CTTTGATAAAATAACCATTTTGCCCCTAGA
1 CTTTGACAAAATAACCATTTTGCCCCTAGA
90054438 CTTTGACAAAATAACCATTTTGCCCCTA
1 CTTTGACAAAATAACCATTTTGCCCCTA
90054466 TGCTCGAAAA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.26, G:0.09, T:0.33
Consensus pattern (30 bp):
CTTTGACAAAATAACCATTTTGCCCCTAGA
Found at i:90061665 original size:51 final size:51
Alignment explanation
Indices: 90061577--90061696 Score: 129
Period size: 51 Copynumber: 2.4 Consensus size: 51
90061567 ATCACATATG
* * * *
90061577 TGGTACTAAGTGTAGGCCACTATATGTAAAAGATAGCTTTG-GTCACAAGTC
1 TGGTACTATGTGAAGGCCACTATATGTAAAAGATAGCTTTGACT-ACAAGGC
* *
90061628 TGGTACTATGTGAAGGCCACT-T-TGTGAAGAAGGTAGCTTTGACTACAAGGG
1 TGGTACTATGTGAAGGCCACTATATGT-AA-AAGATAGCTTTGACTACAAGGC
*
90061679 TGGTACTATGTGCAGGCC
1 TGGTACTATGTGAAGGCC
90061697 GGGCATCCGT
Statistics
Matches: 59, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
49 3 0.05
50 3 0.05
51 52 0.88
52 1 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (51 bp):
TGGTACTATGTGAAGGCCACTATATGTAAAAGATAGCTTTGACTACAAGGC
Found at i:90063214 original size:30 final size:30
Alignment explanation
Indices: 90063180--90063248 Score: 111
Period size: 30 Copynumber: 2.3 Consensus size: 30
90063170 TACACGGGAT
*
90063180 GAGACACGGTCGTGTGTCTCAACCGTGTGA
1 GAGACACGGCCGTGTGTCTCAACCGTGTGA
*
90063210 GAGACACGGCCGTGTGTCTCATCCGTGTGA
1 GAGACACGGCCGTGTGTCTCAACCGTGTGA
*
90063240 GGGACACGG
1 GAGACACGG
90063249 GCTGGTGACA
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.19, C:0.25, G:0.36, T:0.20
Consensus pattern (30 bp):
GAGACACGGCCGTGTGTCTCAACCGTGTGA
Found at i:90071999 original size:31 final size:32
Alignment explanation
Indices: 90071964--90072039 Score: 91
Period size: 32 Copynumber: 2.4 Consensus size: 32
90071954 TATAAATTTA
*
90071964 TTATTGGACTATTCGAAA-GTTTTGATTTAAG
1 TTATTGGACTATTCGAAACATTTTGATTTAAG
* * *
90071995 TTATTGAACTATTTGAAACATTTTTATTTAAG
1 TTATTGGACTATTCGAAACATTTTGATTTAAG
* *
90072027 TCATTGGGCTATT
1 TTATTGGACTATT
90072040 AAGTTTTTTC
Statistics
Matches: 37, Mismatches: 7, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
31 16 0.43
32 21 0.57
ACGTcount: A:0.29, C:0.08, G:0.16, T:0.47
Consensus pattern (32 bp):
TTATTGGACTATTCGAAACATTTTGATTTAAG
Found at i:90072875 original size:32 final size:32
Alignment explanation
Indices: 90072833--90072900 Score: 127
Period size: 32 Copynumber: 2.1 Consensus size: 32
90072823 ATCTGCATAT
*
90072833 TTTTTTTATTTTTGAATGTTATTTTCTTGTTG
1 TTTTTCTATTTTTGAATGTTATTTTCTTGTTG
90072865 TTTTTCTATTTTTGAATGTTATTTTCTTGTTG
1 TTTTTCTATTTTTGAATGTTATTTTCTTGTTG
90072897 TTTT
1 TTTT
90072901 CTCCTTATTT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.12, C:0.04, G:0.12, T:0.72
Consensus pattern (32 bp):
TTTTTCTATTTTTGAATGTTATTTTCTTGTTG
Found at i:90073016 original size:30 final size:30
Alignment explanation
Indices: 90072982--90073044 Score: 108
Period size: 30 Copynumber: 2.1 Consensus size: 30
90072972 ATTTATTTTA
*
90072982 TTGTTAATTTTCTTATTATTTTAAAGGCAT
1 TTGTTAATTTTCTTATTATTTTAAAAGCAT
*
90073012 TTGTTAATTTTTTTATTATTTTAAAAGCAT
1 TTGTTAATTTTCTTATTATTTTAAAAGCAT
90073042 TTG
1 TTG
90073045 CTTGTTAAGT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 31 1.00
ACGTcount: A:0.27, C:0.05, G:0.10, T:0.59
Consensus pattern (30 bp):
TTGTTAATTTTCTTATTATTTTAAAAGCAT
Found at i:90073141 original size:25 final size:23
Alignment explanation
Indices: 90073085--90073141 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 23
90073075 TTAAGTCTAC
*
90073085 ATATTTTTT-AAAATTTATTTTT
1 ATATTTTTTGAAAATTTATTTTG
90073107 A-ATTTGTTTGGAAATATTTATTTTG
1 ATATTT-TTT-GAAA-ATTTATTTTG
90073132 ATATTTTTTG
1 ATATTTTTTG
90073142 TATTTTTTAT
Statistics
Matches: 29, Mismatches: 1, Indels: 8
0.76 0.03 0.21
Matches are distributed among these distances:
21 4 0.14
22 4 0.14
24 4 0.14
25 13 0.45
26 4 0.14
ACGTcount: A:0.28, C:0.00, G:0.09, T:0.63
Consensus pattern (23 bp):
ATATTTTTTGAAAATTTATTTTG
Found at i:90073767 original size:6 final size:5
Alignment explanation
Indices: 90073745--90073780 Score: 54
Period size: 5 Copynumber: 7.0 Consensus size: 5
90073735 TGTATTCTTG
*
90073745 ATTTT ATTTT ATTTT ATTTTT ATTTA ATTTT ATTTT
1 ATTTT ATTTT ATTTT A-TTTT ATTTT ATTTT ATTTT
90073781 CACAAATTGG
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
5 23 0.82
6 5 0.18
ACGTcount: A:0.22, C:0.00, G:0.00, T:0.78
Consensus pattern (5 bp):
ATTTT
Found at i:90073767 original size:16 final size:16
Alignment explanation
Indices: 90073746--90073780 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
90073736 GTATTCTTGA
*
90073746 TTTTATTTTATTTTAT
1 TTTTATTTAATTTTAT
90073762 TTTTATTTAATTTTAT
1 TTTTATTTAATTTTAT
90073778 TTT
1 TTT
90073781 CACAAATTGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (16 bp):
TTTTATTTAATTTTAT
Found at i:90081898 original size:46 final size:48
Alignment explanation
Indices: 90081794--90081907 Score: 151
Period size: 48 Copynumber: 2.4 Consensus size: 48
90081784 TGTCTTCGAC
** * *
90081794 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATATATATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
* * *
90081842 ATGGGCTTACATGGCTCATTCCTGTCTCCAAAGCCATATA-A-CTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
90081888 ATGGACTTACATGGCTCATT
1 ATGGACTTACATGGCTCATT
90081908 TCTATCCTGT
Statistics
Matches: 58, Mismatches: 8, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
46 22 0.38
47 1 0.02
48 35 0.60
ACGTcount: A:0.29, C:0.22, G:0.15, T:0.34
Consensus pattern (48 bp):
ATGGACTTACATGGCTCATTCCTGTCTCCAAAGCCATATATATATAAT
Found at i:90086197 original size:46 final size:46
Alignment explanation
Indices: 90086092--90086209 Score: 137
Period size: 46 Copynumber: 2.6 Consensus size: 46
90086082 TGTCTTCGAC
** * ** *
90086092 ATGGACTTACATGAATTATTCCTGTCTCCAATGCCATATAAATAAT
1 ATGGACTTACATGGCTCATTCCTGTCTAAAAAGCCATATAAATAAT
* * *
90086138 ATGGGCTTACATGGCTCATTCCTGTCTAAAAAGCCATATAACTGAT
1 ATGGACTTACATGGCTCATTCCTGTCTAAAAAGCCATATAAATAAT
* *
90086184 ATGGACTTGCATGGCTCATTTCTGTC
1 ATGGACTTACATGGCTCATTCCTGTC
90086210 CTGTCCTGTC
Statistics
Matches: 60, Mismatches: 12, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
46 60 1.00
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (46 bp):
ATGGACTTACATGGCTCATTCCTGTCTAAAAAGCCATATAAATAAT
Found at i:90086215 original size:5 final size:5
Alignment explanation
Indices: 90086205--90086229 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
90086195 TGGCTCATTT
90086205 CTGTC CTGTC CTGTC CTGTC CTGTC
1 CTGTC CTGTC CTGTC CTGTC CTGTC
90086230 AACCCCAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.00, C:0.40, G:0.20, T:0.40
Consensus pattern (5 bp):
CTGTC
Found at i:90091200 original size:52 final size:52
Alignment explanation
Indices: 90091122--90091225 Score: 199
Period size: 52 Copynumber: 2.0 Consensus size: 52
90091112 CAAGCATGCA
90091122 ATCTTACCATATATTTCATACCTAATAGTATCAGCTTATTATAAAACTTAAC
1 ATCTTACCATATATTTCATACCTAATAGTATCAGCTTATTATAAAACTTAAC
*
90091174 ATCTTACCATATATTTCATACCTAATAGTATCAGCTTATTCTAAAACTTAAC
1 ATCTTACCATATATTTCATACCTAATAGTATCAGCTTATTATAAAACTTAAC
90091226 TTGTAACTCC
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
52 51 1.00
ACGTcount: A:0.38, C:0.20, G:0.04, T:0.38
Consensus pattern (52 bp):
ATCTTACCATATATTTCATACCTAATAGTATCAGCTTATTATAAAACTTAAC
Found at i:90094002 original size:53 final size:53
Alignment explanation
Indices: 90093937--90094053 Score: 198
Period size: 53 Copynumber: 2.2 Consensus size: 53
90093927 TCAAGGTTTT
* *
90093937 TAGACACGGGCTAGGACACGAGCGTGTCATGACCGTGTGAGGAACACGGGCCA
1 TAGACACAGGCTAGGACACGAGCGTGTCATGACCGTGTGAGGAACACGAGCCA
* *
90093990 TAGACACAGGCTAGGACACGAGTGTGTCATGGCCGTGTGAGGAACACGAGCCA
1 TAGACACAGGCTAGGACACGAGCGTGTCATGACCGTGTGAGGAACACGAGCCA
90094043 TAGACACAGGC
1 TAGACACAGGC
90094054 GTGTATCAAG
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
53 60 1.00
ACGTcount: A:0.28, C:0.24, G:0.34, T:0.14
Consensus pattern (53 bp):
TAGACACAGGCTAGGACACGAGCGTGTCATGACCGTGTGAGGAACACGAGCCA
Found at i:90096655 original size:60 final size:59
Alignment explanation
Indices: 90096566--90096711 Score: 161
Period size: 60 Copynumber: 2.4 Consensus size: 59
90096556 GGGGCCTAAA
* * * *
90096566 TTTTTTTAACCTAAGTTAAACCCTAAACTTGA-AAATTATTTCCACATTGGGA-TCTAAACT
1 TTTTTTTATCC-AAGTTAAGCCTTGAACTTGACAAA-TATTTCCACATTGGGAGT-TAAACT
* * * *
90096626 TTTCTTTTATCCAAGTTAGGCCTTGAACTTGACCAATATTTCCTCATTGGGAGTTCAACT
1 TTT-TTTTATCCAAGTTAAGCCTTGAACTTGACAAATATTTCCACATTGGGAGTTAAACT
*
90096686 TTTTTTTATCCAAGTTAATCCTTGAA
1 TTTTTTTATCCAAGTTAAGCCTTGAA
90096712 AACCTTAAAG
Statistics
Matches: 73, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
59 21 0.29
60 42 0.58
61 10 0.14
ACGTcount: A:0.29, C:0.19, G:0.11, T:0.41
Consensus pattern (59 bp):
TTTTTTTATCCAAGTTAAGCCTTGAACTTGACAAATATTTCCACATTGGGAGTTAAACT
Found at i:90100960 original size:28 final size:28
Alignment explanation
Indices: 90100920--90100973 Score: 90
Period size: 28 Copynumber: 1.9 Consensus size: 28
90100910 TTACCCAAAA
90100920 AAAACTTATTAGATTAGGTCAATTTTTC
1 AAAACTTATTAGATTAGGTCAATTTTTC
* *
90100948 AAAATTTATTAGATTAGGTTAATTTT
1 AAAACTTATTAGATTAGGTCAATTTT
90100974 AGAAAGAGAG
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.37, C:0.06, G:0.11, T:0.46
Consensus pattern (28 bp):
AAAACTTATTAGATTAGGTCAATTTTTC
Found at i:90101151 original size:25 final size:23
Alignment explanation
Indices: 90101086--90101151 Score: 62
Period size: 22 Copynumber: 2.8 Consensus size: 23
90101076 TCTCCAGGGC
* *
90101086 TTTTTTAGTGATTTT-TTTTAGA
1 TTTTTTAGGGTTTTTGTTTTAGA
***
90101108 TTTTTTAGGGTTAGGGTTTTAGA
1 TTTTTTAGGGTTTTTGTTTTAGA
90101131 TTCTTTTAAGGGTTTTTGTTT
1 TT-TTTT-AGGGTTTTTGTTT
90101152 AAGGTTTGTA
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
22 10 0.30
23 9 0.27
24 4 0.12
25 10 0.30
ACGTcount: A:0.15, C:0.02, G:0.21, T:0.62
Consensus pattern (23 bp):
TTTTTTAGGGTTTTTGTTTTAGA
Found at i:90101259 original size:20 final size:21
Alignment explanation
Indices: 90101234--90101276 Score: 63
Period size: 20 Copynumber: 2.1 Consensus size: 21
90101224 AAATTTTTAA
90101234 TTTTTA-ACATTTTTAT-ATAT
1 TTTTTAGA-ATTTTTATAATAT
90101254 TTTTTAGAATTTTTATAATAT
1 TTTTTAGAATTTTTATAATAT
90101275 TT
1 TT
90101277 ATATTTTTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
20 14 0.67
21 7 0.33
ACGTcount: A:0.30, C:0.02, G:0.02, T:0.65
Consensus pattern (21 bp):
TTTTTAGAATTTTTATAATAT
Found at i:90101277 original size:29 final size:28
Alignment explanation
Indices: 90101232--90101286 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 28
90101222 GAAAATTTTT
*
90101232 AATTTTTAACATTTTTATATATTTTTTAG
1 AATTTTTAACATATTTATAT-TTTTTTAG
90101261 AATTTTTATA-ATATTTATATTTTTTT
1 AATTTTTA-ACATATTTATATTTTTTT
90101287 GAAAAATATA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
28 6 0.25
29 17 0.71
30 1 0.04
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (28 bp):
AATTTTTAACATATTTATATTTTTTTAG
Found at i:90116300 original size:43 final size:43
Alignment explanation
Indices: 90116235--90116401 Score: 178
Period size: 43 Copynumber: 3.9 Consensus size: 43
90116225 ACCTCATACA
* * * *
90116235 ATGCC-ATATCCCAGATATGGTCTTACATGTTATCACATATCG
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
* * * *
90116277 ATGCCATTGTCCCAGACAGGGTCTTACACGAAATCATATAAT-G
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT-ATCG
* * *
90116320 ATGTCAATGTCCTAGACATGGTCTTACACGTAATCACA-ATACA
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATAT-CG
* *
90116363 ATGCCAATGTCCCGGACATGGTCTTACATGTAATCACAT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACAT
90116402 CTCGGTAATC
Statistics
Matches: 101, Mismatches: 19, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
41 2 0.02
42 5 0.05
43 92 0.91
44 2 0.02
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (43 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCACATATCG
Found at i:90116590 original size:35 final size:36
Alignment explanation
Indices: 90116522--90116595 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 36
90116512 CATTCGTAGC
* *
90116522 AATTCAATGATAATGAAACATATATAACTCAA-TTA
1 AATTCAATGATAATGAAACATATAAAACACAATTTA
* *
90116557 AATTCAATGATAAAT-AAGCATTTAAAACACAATTTA
1 AATTCAATGAT-AATGAAACATATAAAACACAATTTA
90116593 AAT
1 AAT
90116596 ACGTTATTAG
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
35 24 0.73
36 9 0.27
ACGTcount: A:0.53, C:0.11, G:0.05, T:0.31
Consensus pattern (36 bp):
AATTCAATGATAATGAAACATATAAAACACAATTTA
Done.