Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 269 of 297
Found at i:91729981 original size:48 final size:48
Alignment explanation
Indices: 91729899--91729993 Score: 145
Period size: 48 Copynumber: 2.0 Consensus size: 48
91729889 GAGATTGATA
* ** *
91729899 GCAGGAATGAGGAGTATAAACTCCTTGAACCACCATGATTATTCAACG
1 GCAGGAATGAGGAGTATAAACTACTCAAACCACCATGATCATTCAACG
*
91729947 GCAGGAATGAGGAGTATAAACTACTCAAATCACCATGATCATTCAAC
1 GCAGGAATGAGGAGTATAAACTACTCAAACCACCATGATCATTCAAC
91729994 AGAGGACTAT
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
48 42 1.00
ACGTcount: A:0.38, C:0.21, G:0.19, T:0.22
Consensus pattern (48 bp):
GCAGGAATGAGGAGTATAAACTACTCAAACCACCATGATCATTCAACG
Found at i:91737693 original size:40 final size:40
Alignment explanation
Indices: 91737638--91737762 Score: 173
Period size: 40 Copynumber: 3.1 Consensus size: 40
91737628 GCTTGCAATG
* * *
91737638 CATTGACTTGGTTATGTTACCGTAAGCATGTTAAGCATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
91737678 CATTGAATTGATTATGTTACCATAAGCATGTTAA-CTATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAGC-ATGC
* *
91737718 CATTGAATTGATTATGTTTCCATAAGCAT-ATAAGACATGC
1 CATTGAATTGATTATGTTACCATAAGCATGTTAAG-CATGC
91737758 CATTG
1 CATTG
91737763 TACTTAAATC
Statistics
Matches: 77, Mismatches: 5, Indels: 6
0.88 0.06 0.07
Matches are distributed among these distances:
39 4 0.05
40 72 0.94
41 1 0.01
ACGTcount: A:0.30, C:0.16, G:0.18, T:0.36
Consensus pattern (40 bp):
CATTGAATTGATTATGTTACCATAAGCATGTTAAGCATGC
Found at i:91738457 original size:50 final size:50
Alignment explanation
Indices: 91738402--91738509 Score: 189
Period size: 50 Copynumber: 2.2 Consensus size: 50
91738392 GGACTGTAAA
*
91738402 GCTTTATTTTGGACTATGGTTTATGGTTTTTGGATATGGTTTTTACGCAT
1 GCTTTATTTTGGACTATGGTTTATGGTTTTTAGATATGGTTTTTACGCAT
* *
91738452 GCTTTATTTTGGGCTATGGTTTATGGTTTTTAGATATGGTTTTTATGCAT
1 GCTTTATTTTGGACTATGGTTTATGGTTTTTAGATATGGTTTTTACGCAT
91738502 GCTTTATT
1 GCTTTATT
91738510 CAACACATTG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 55 1.00
ACGTcount: A:0.16, C:0.07, G:0.23, T:0.54
Consensus pattern (50 bp):
GCTTTATTTTGGACTATGGTTTATGGTTTTTAGATATGGTTTTTACGCAT
Found at i:91744111 original size:25 final size:25
Alignment explanation
Indices: 91744079--91744165 Score: 75
Period size: 25 Copynumber: 3.5 Consensus size: 25
91744069 AGCTATAAAC
* * *
91744079 GGGAAGCTCCTCCAAGCTGAATAAT
1 GGGAAGCTCATACAAGCTAAATAAT
*
91744104 GGGAAGCTCATACGAGCTAAATAAT
1 GGGAAGCTCATACAAGCTAAATAAT
* * * ** * *
91744129 GGAAAGCTTATACGAGCTGTAGAAC
1 GGGAAGCTCATACAAGCTAAATAAT
91744154 GGGAAGCTCATA
1 GGGAAGCTCATA
91744166 AGAGATGAAA
Statistics
Matches: 50, Mismatches: 12, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
25 50 1.00
ACGTcount: A:0.36, C:0.18, G:0.26, T:0.20
Consensus pattern (25 bp):
GGGAAGCTCATACAAGCTAAATAAT
Found at i:91756552 original size:30 final size:30
Alignment explanation
Indices: 91756495--91756552 Score: 71
Period size: 30 Copynumber: 1.9 Consensus size: 30
91756485 TTTTCGGGCT
* * * **
91756495 TAGGGGTAAAATGGTTATTTTGTCAAAGTC
1 TAGGGGCAAAATGGTCATTGTACCAAAGTC
91756525 TAGGGGCAAAATGGTCATTGTACCAAAG
1 TAGGGGCAAAATGGTCATTGTACCAAAG
91756553 ATAGAATTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 23 1.00
ACGTcount: A:0.33, C:0.10, G:0.28, T:0.29
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTGTACCAAAGTC
Found at i:91756936 original size:46 final size:46
Alignment explanation
Indices: 91756883--91757147 Score: 162
Period size: 46 Copynumber: 5.6 Consensus size: 46
91756873 TGTGAGCTAG
* ** *
91756883 TGTAAGACATGTATGGGACATGCATCGGCCACGTTATGGGAGCCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAA
* * * * * *
91756929 TGTAAGACCATGTCTGGGACATGGCAT-TGACATTGAGATGAGTGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGATGAGAGCCAA
* * *
91756977 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA-AGTCAA
1 TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATG-AGAGCCAA
* * * * * * *
91757023 TGTAAGACATGTTTGGGACATGCATTGGCTACGAAAT-A-TGTCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAA
* * **
91757067 TGTAAGACCATGTCTGGGAGATGGCATCGG-CACAGATATGCTAGAGCCTG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCAC-GAGATG--AGAGCCAA
* *
91757117 CGTAAGACCAAGTCTGGGACATGGCATCGGC
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGC
91757148 ACCTTACTCC
Statistics
Matches: 168, Mismatches: 38, Indels: 21
0.74 0.17 0.09
Matches are distributed among these distances:
44 12 0.07
45 14 0.08
46 59 0.35
47 33 0.20
48 19 0.11
49 1 0.01
50 30 0.18
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.23
Consensus pattern (46 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACGAGATGAGAGCCAA
Found at i:91764555 original size:43 final size:42
Alignment explanation
Indices: 91764434--91764590 Score: 203
Period size: 43 Copynumber: 3.7 Consensus size: 42
91764424 TGTGTGTTCG
* *
91764434 TGTAAGAGCACGTCTGGGACGTTGGCATTG-ACTTATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTA-TT-TGATTT-CA
*
91764478 TGTAAGACCACATCTGGGACGTTGGCATCGTATTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
*
91764520 TGTAAGACC-CTGTCTGGGACAG-TGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCG-TATTTGATTTCA
91764563 TGTAAGACCACGTCTGGGACGTTGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
91764591 TGTACGAGCT
Statistics
Matches: 102, Mismatches: 5, Indels: 13
0.85 0.04 0.11
Matches are distributed among these distances:
41 1 0.01
42 28 0.27
43 42 0.41
44 30 0.29
45 1 0.01
ACGTcount: A:0.24, C:0.18, G:0.27, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGTATTTGATTTCA
Found at i:91775911 original size:12 final size:13
Alignment explanation
Indices: 91775894--91775922 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
91775884 TTCTTTCATT
91775894 ATTTAAAA-TATA
1 ATTTAAAACTATA
91775906 ATTTAAAACTATA
1 ATTTAAAACTATA
91775919 ATTT
1 ATTT
91775923 TACAAGGTTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.52, C:0.03, G:0.00, T:0.45
Consensus pattern (13 bp):
ATTTAAAACTATA
Found at i:91780147 original size:44 final size:46
Alignment explanation
Indices: 91780062--91780151 Score: 130
Period size: 44 Copynumber: 2.0 Consensus size: 46
91780052 GACTATAAAT
*
91780062 GAATAGAGCTGTAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
1 GAATAGAGCTATAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
***
91780108 GAATAGAGCTATAAT-AGT-ATTCTTGTGTTTGGTTGAATGGAATG
1 GAATAGAGCTATAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
91780152 ATGTTGTAAT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
44 23 0.57
45 3 0.08
46 14 0.35
ACGTcount: A:0.32, C:0.06, G:0.27, T:0.36
Consensus pattern (46 bp):
GAATAGAGCTATAATAAGTAATTCAACTGTTTGGTTGAATGGAATG
Found at i:91780345 original size:17 final size:17
Alignment explanation
Indices: 91780323--91780356 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91780313 TAATTATTAT
91780323 TAAATATAATTTAATAA
1 TAAATATAATTTAATAA
91780340 TAAATATAATTTAATAA
1 TAAATATAATTTAATAA
91780357 CATTCTTAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (17 bp):
TAAATATAATTTAATAA
Found at i:91780371 original size:55 final size:57
Alignment explanation
Indices: 91780249--91780379 Score: 148
Period size: 58 Copynumber: 2.3 Consensus size: 57
91780239 TTATTAAATT
*
91780249 TTAATA-AGATTATTATTAAAAATAATTTAATAAAAATAATAAATAGTTTAACTATATT
1 TTAATATA-ATTATTATTAAAAATAATTTAATAAAAATAATAAATA-TTTAACTATATC
* *
91780307 TTAACATAATTATTATTAAATATAATTTAATAATAAAT-AT-AAT-TTAATAAC-AT-TC
1 TTAATATAATTATTATTAAAAATAATTTAATAA-AAATAATAAATATT--TAACTATATC
91780362 TTAATATAATTATTATTA
1 TTAATATAATTATTATTA
91780380 TATGAATTAA
Statistics
Matches: 65, Mismatches: 4, Indels: 11
0.81 0.05 0.14
Matches are distributed among these distances:
55 20 0.31
56 2 0.03
57 7 0.11
58 31 0.48
59 5 0.08
ACGTcount: A:0.51, C:0.03, G:0.02, T:0.44
Consensus pattern (57 bp):
TTAATATAATTATTATTAAAAATAATTTAATAAAAATAATAAATATTTAACTATATC
Found at i:91783278 original size:44 final size:44
Alignment explanation
Indices: 91783230--91783318 Score: 169
Period size: 44 Copynumber: 2.0 Consensus size: 44
91783220 TCCTCTCTTC
91783230 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
1 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
*
91783274 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCTGAAACAT
1 TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
91783318 T
1 T
91783319 CCTACCATTC
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 44 1.00
ACGTcount: A:0.13, C:0.26, G:0.04, T:0.56
Consensus pattern (44 bp):
TTCTATTTTCTTTTTCTCCTTCTTTTCTTCTCTAGCCGAAACAT
Found at i:91794785 original size:44 final size:41
Alignment explanation
Indices: 91794749--91794827 Score: 117
Period size: 39 Copynumber: 2.0 Consensus size: 41
91794739 TAAATGCAGA
91794749 ACACATATTAATGATGTTCAAACCATGACATAATT-AA-AG
1 ACACATATTAATGATGTTCAAACCATGACATAATTAAATAG
* **
91794788 ACTCATATTAATGATGTTCAAATTATGACATAATTAAATA
1 ACACATATTAATGATGTTCAAACCATGACATAATTAAATA
91794828 TACAAACTAA
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 32 0.91
40 2 0.06
41 1 0.03
ACGTcount: A:0.46, C:0.13, G:0.09, T:0.33
Consensus pattern (41 bp):
ACACATATTAATGATGTTCAAACCATGACATAATTAAATAG
Found at i:91798312 original size:5 final size:5
Alignment explanation
Indices: 91798298--91798336 Score: 60
Period size: 5 Copynumber: 7.6 Consensus size: 5
91798288 TGAGGTGAGT
*
91798298 ATTGA TATTGA ATTGA ATGGA ATTGA ATTGA ATTGA ATT
1 ATTGA -ATTGA ATTGA ATTGA ATTGA ATTGA ATTGA ATT
91798337 ATGAATTATG
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
5 26 0.84
6 5 0.16
ACGTcount: A:0.38, C:0.00, G:0.21, T:0.41
Consensus pattern (5 bp):
ATTGA
Found at i:91800659 original size:40 final size:40
Alignment explanation
Indices: 91800615--91800842 Score: 343
Period size: 40 Copynumber: 5.7 Consensus size: 40
91800605 GCTACTAGCT
91800615 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
91800655 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* *
91800695 CAAATGCCTTCGGGACTTAGCCTGGTTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * * *
91800735 CAACTGCCTTCAGGACTTAGCCCGGATATAGTAACTCACA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
* * *
91800775 CAAATGCCTTCGGG-CTTAGCCCGG-AATTAGTCACTAGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTA-TAGTAACTCGCA
91800814 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
91800843 CAATCCGAAT
Statistics
Matches: 168, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
38 1 0.01
39 33 0.20
40 133 0.79
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:91807436 original size:8 final size:9
Alignment explanation
Indices: 91807413--91807447 Score: 61
Period size: 9 Copynumber: 3.9 Consensus size: 9
91807403 TTTTTCTATC
*
91807413 TCTTTTTCT
1 TCTTTTTCA
91807422 TCTTTTTCA
1 TCTTTTTCA
91807431 TCTTTTTCA
1 TCTTTTTCA
91807440 TCTTTTTC
1 TCTTTTTC
91807448 TTCTCTCACT
Statistics
Matches: 25, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.06, C:0.23, G:0.00, T:0.71
Consensus pattern (9 bp):
TCTTTTTCA
Found at i:91815773 original size:39 final size:39
Alignment explanation
Indices: 91815719--91815795 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
91815709 ATGTAAAACA
91815719 CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
1 CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
*
91815758 CATATTAATGATGTTCAAACTATGACATAATTAAAGAC
1 CATATTAATGATGTTCAAACCATGACATAATTAAAGAC
91815796 ACAAACTAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.44, C:0.14, G:0.10, T:0.31
Consensus pattern (39 bp):
CATATTAATGATGTTCAAACCATGACATAATTAAAGACT
Found at i:91827251 original size:20 final size:20
Alignment explanation
Indices: 91827226--91827271 Score: 92
Period size: 20 Copynumber: 2.3 Consensus size: 20
91827216 GTATAGTACG
91827226 ACAAACCATAAATTTGTAGA
1 ACAAACCATAAATTTGTAGA
91827246 ACAAACCATAAATTTGTAGA
1 ACAAACCATAAATTTGTAGA
91827266 ACAAAC
1 ACAAAC
91827272 TAAAGTAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.52, C:0.17, G:0.09, T:0.22
Consensus pattern (20 bp):
ACAAACCATAAATTTGTAGA
Found at i:91832920 original size:3 final size:3
Alignment explanation
Indices: 91832902--91832943 Score: 66
Period size: 3 Copynumber: 14.0 Consensus size: 3
91832892 GTATATACAT
* *
91832902 ATA ATA ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91832944 TGAAAATACA
Statistics
Matches: 37, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.62, C:0.00, G:0.05, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91834898 original size:72 final size:72
Alignment explanation
Indices: 91834800--91834951 Score: 193
Period size: 72 Copynumber: 2.1 Consensus size: 72
91834790 TGAAACTTAA
** * ** *
91834800 TTTGAAAAGCAGATTTTGAAAATACCTCAAT-G-AGTCTTGAGGCTCAACTCATTTCTCGCAATA
1 TTTGAAAAGCAGAAATTGAAAATACCTC-ATCGTA-TCCTGAGGCTCAACTCACCTCTAGCAATA
91834863 TGAGTTGAAT
64 TGAGTTG-AT
*
91834873 TTTGAAAA-CAGAAATTGAAATTACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
1 TTTGAAAAGCAGAAATTGAAAATACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
91834937 AGTTGAT
66 AGTTGAT
91834944 TTTGAAAA
1 TTTGAAAA
91834952 AGTAGGAATT
Statistics
Matches: 70, Mismatches: 7, Indels: 6
0.84 0.08 0.07
Matches are distributed among these distances:
71 12 0.17
72 49 0.70
73 9 0.13
ACGTcount: A:0.34, C:0.18, G:0.16, T:0.32
Consensus pattern (72 bp):
TTTGAAAAGCAGAAATTGAAAATACCTCATCGTATCCTGAGGCTCAACTCACCTCTAGCAATATG
AGTTGAT
Found at i:91835027 original size:127 final size:127
Alignment explanation
Indices: 91834853--91835245 Score: 670
Period size: 127 Copynumber: 3.1 Consensus size: 127
91834843 TCAACTCATT
91834853 TCTCGCAATATGAGTTGAATT-TTGA-AAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
1 TCTCGCAATATGAGTTG-ATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCT
91834916 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
65 CAACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
*
91834979 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCTTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
*
91835044 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAGAAGGTTCAACCCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
91835106 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
1 TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
* ** * *
91835171 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAA-CAAAAATGAAAAGGCTT-AACTCACC
66 AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGG-TTCAACCCACC
91835232 -CTCGCAATATGAGT
1 TCTCGCAATATGAGT
91835246 CAATTTAAAA
Statistics
Matches: 255, Mismatches: 9, Indels: 7
0.94 0.03 0.03
Matches are distributed among these distances:
125 17 0.07
126 37 0.15
127 201 0.79
ACGTcount: A:0.35, C:0.20, G:0.17, T:0.28
Consensus pattern (127 bp):
TCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTATCCTGAGGCTC
AACTCACCTCTAGCAATATGAGTTGATTTTGAAAAAGTAGGAATTAAAAGGTTCAACCCACC
Found at i:91843718 original size:16 final size:17
Alignment explanation
Indices: 91843692--91843723 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
91843682 AGTATGGGAT
91843692 ATGCAATGAATGAATGG
1 ATGCAATGAATGAATGG
91843709 ATGC-ATGAATGAATG
1 ATGCAATGAATGAATG
91843724 CATGGATGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.41, C:0.06, G:0.28, T:0.25
Consensus pattern (17 bp):
ATGCAATGAATGAATGG
Found at i:91846173 original size:3 final size:3
Alignment explanation
Indices: 91846165--91846239 Score: 123
Period size: 3 Copynumber: 25.0 Consensus size: 3
91846155 GTATATACAT
* * *
91846165 ATA ATA ATA ATG ATG ATG ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
91846213 ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA
91846240 TGAAAATACA
Statistics
Matches: 70, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 70 1.00
ACGTcount: A:0.63, C:0.00, G:0.04, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:91847442 original size:17 final size:17
Alignment explanation
Indices: 91847420--91847453 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
91847410 GACGGGTTAT
91847420 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
91847437 TGGGTTGTTTGGTTTAG
1 TGGGTTGTTTGGTTTAG
91847454 GGCCCAAAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.06, C:0.00, G:0.41, T:0.53
Consensus pattern (17 bp):
TGGGTTGTTTGGTTTAG
Found at i:91854389 original size:15 final size:15
Alignment explanation
Indices: 91854369--91854440 Score: 50
Period size: 14 Copynumber: 5.1 Consensus size: 15
91854359 ATAATATAAT
91854369 TATTTTTATATTAAA
1 TATTTTTATATTAAA
91854384 TA--TTT-TA--AAA
1 TATTTTTATATTAAA
*
91854394 TA-TTTTATTTTAAA
1 TATTTTTATATTAAA
*
91854408 TTATATTTTGAAATTAAA
1 -TAT-TTTT-ATATTAAA
91854426 TATTTTT-TATTAAA
1 TATTTTTATATTAAA
91854440 T
1 T
91854441 TATATTAAAA
Statistics
Matches: 45, Mismatches: 4, Indels: 17
0.68 0.06 0.26
Matches are distributed among these distances:
10 5 0.11
11 3 0.07
12 3 0.07
13 3 0.07
14 10 0.22
15 4 0.09
16 4 0.09
17 7 0.16
18 6 0.13
ACGTcount: A:0.40, C:0.00, G:0.01, T:0.58
Consensus pattern (15 bp):
TATTTTTATATTAAA
Found at i:91854410 original size:29 final size:33
Alignment explanation
Indices: 91854344--91854410 Score: 79
Period size: 29 Copynumber: 2.1 Consensus size: 33
91854334 TATAATTATC
*
91854344 ATTAAATATAATTTAATAATATAATTATTTTTAT
1 ATTAAATAT-ATTTAATAATATAATTATTTTTAA
*
91854378 ATTAAATAT-TTTAA-AATAT-TTTA-TTTTAA
1 ATTAAATATATTTAATAATATAATTATTTTTAA
91854407 ATTA
1 ATTA
91854411 TATTTTGAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
29 9 0.29
30 3 0.10
31 5 0.16
32 5 0.16
34 9 0.29
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (33 bp):
ATTAAATATATTTAATAATATAATTATTTTTAA
Found at i:91854810 original size:44 final size:44
Alignment explanation
Indices: 91854760--91854843 Score: 150
Period size: 44 Copynumber: 1.9 Consensus size: 44
91854750 AATTTTAAAC
* *
91854760 TAAATTATAATTATTTTTAAATGTGTAATTATTACAACTTCTAT
1 TAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTAT
91854804 TAAATTATAATTATTTTTAAATGTATAATTATCACAACTT
1 TAAATTATAATTATTTTTAAATGTATAATTATCACAACTT
91854844 ATATATAATA
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
44 38 1.00
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (44 bp):
TAAATTATAATTATTTTTAAATGTATAATTATCACAACTTCTAT
Found at i:91856026 original size:7 final size:7
Alignment explanation
Indices: 91856014--91856048 Score: 70
Period size: 7 Copynumber: 5.0 Consensus size: 7
91856004 ATCAAGGGAC
91856014 TATACAT
1 TATACAT
91856021 TATACAT
1 TATACAT
91856028 TATACAT
1 TATACAT
91856035 TATACAT
1 TATACAT
91856042 TATACAT
1 TATACAT
91856049 ATGAAATGGT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 28 1.00
ACGTcount: A:0.43, C:0.14, G:0.00, T:0.43
Consensus pattern (7 bp):
TATACAT
Found at i:91859808 original size:43 final size:43
Alignment explanation
Indices: 91859743--91859901 Score: 160
Period size: 43 Copynumber: 3.7 Consensus size: 43
91859733 GGAATTAAGA
* * *
91859743 AATTCGAGCTCGTTGAGCGGTCCGAGTTCATGATATAGGTGAG
1 AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
* * *
91859786 AATTCGAACTTGTTGAGTGGTCCAAGTTCGTGATATATGTG-G
1 AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
* * * *** * *
91859828 CATCCGAGCTCCTTGAGTGGTTTGAGTTCATTATAGATGTGAG
1 AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
*
91859871 CA-TCTGAGCTCGTTGAGTGGTCCAAGTTCAT
1 AATTC-GAGCTCGTTGAGTGGTCCAAGTTCAT
91859902 AATGGACGTG
Statistics
Matches: 92, Mismatches: 22, Indels: 4
0.78 0.19 0.03
Matches are distributed among these distances:
42 32 0.35
43 60 0.65
ACGTcount: A:0.22, C:0.16, G:0.29, T:0.33
Consensus pattern (43 bp):
AATTCGAGCTCGTTGAGTGGTCCAAGTTCATGATATATGTGAG
Found at i:91862687 original size:45 final size:45
Alignment explanation
Indices: 91862579--91862842 Score: 349
Period size: 45 Copynumber: 5.9 Consensus size: 45
91862569 TCGAATTCAT
* * * *
91862579 TCACCGGCATT-TCGCCTGCTAGGCTC-GAGGCTCG-AT-ATCATT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT-ATC
* ** *
91862621 TCACCAGCATTATAGTTTGCTAGGCTCGAAA-GCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTC-AAAGGCCCGAATAATATC
* *
91862666 TCACCGGCATTGTAGCCTGCTAGGCTCAAAGGCCCGAATAGTATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
91862711 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCAAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
*
91862756 TCACCGGCATCATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
* *
91862801 TCACTGGCATTATAGCCTACTAGGCTCAAAGGCCCGAATAAT
1 TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAAT
91862843 CAAATCCACA
Statistics
Matches: 196, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
42 10 0.05
43 12 0.06
44 7 0.04
45 166 0.85
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (45 bp):
TCACCGGCATTATAGCCTGCTAGGCTCAAAGGCCCGAATAATATC
Found at i:91868375 original size:40 final size:41
Alignment explanation
Indices: 91868315--91868395 Score: 121
Period size: 40 Copynumber: 2.0 Consensus size: 41
91868305 GTAACAGTTT
*
91868315 GGGCCTTAGCCCATCTCAGTA-CAGTATCGAAT-ATGCAGTA
1 GGGCCTTAGCCCATCACAGTATCAGTATC-AATCATGCAGTA
*
91868355 GGGCCTTAGCCCATCACAGTATCAGTGTCAATCATGCAGTA
1 GGGCCTTAGCCCATCACAGTATCAGTATCAATCATGCAGTA
91868396 TTTAGTAACA
Statistics
Matches: 37, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
40 23 0.62
41 14 0.38
ACGTcount: A:0.27, C:0.26, G:0.22, T:0.25
Consensus pattern (41 bp):
GGGCCTTAGCCCATCACAGTATCAGTATCAATCATGCAGTA
Found at i:91876329 original size:59 final size:59
Alignment explanation
Indices: 91876237--91876354 Score: 236
Period size: 59 Copynumber: 2.0 Consensus size: 59
91876227 CATTTTTTAA
91876237 AAGGTAAAACATCATAATTGTACAATTTACTCCTGTTCAGGTTAAGTTGTTTTACCGAG
1 AAGGTAAAACATCATAATTGTACAATTTACTCCTGTTCAGGTTAAGTTGTTTTACCGAG
91876296 AAGGTAAAACATCATAATTGTACAATTTACTCCTGTTCAGGTTAAGTTGTTTTACCGAG
1 AAGGTAAAACATCATAATTGTACAATTTACTCCTGTTCAGGTTAAGTTGTTTTACCGAG
91876355 TTACATTTAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 59 1.00
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (59 bp):
AAGGTAAAACATCATAATTGTACAATTTACTCCTGTTCAGGTTAAGTTGTTTTACCGAG
Found at i:91882525 original size:18 final size:18
Alignment explanation
Indices: 91882502--91882543 Score: 84
Period size: 18 Copynumber: 2.3 Consensus size: 18
91882492 AATGAATTGT
91882502 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
91882520 ATTAAATTGCTTGATGTG
1 ATTAAATTGCTTGATGTG
91882538 ATTAAA
1 ATTAAA
91882544 AATGCATATG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.33, C:0.05, G:0.19, T:0.43
Consensus pattern (18 bp):
ATTAAATTGCTTGATGTG
Found at i:91883774 original size:49 final size:47
Alignment explanation
Indices: 91883682--91884098 Score: 681
Period size: 47 Copynumber: 8.7 Consensus size: 47
91883672 TTAGGATTCT
91883682 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
91883729 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
91883778 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
91883827 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCTTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
91883876 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
91883923 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
91883970 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
91884017 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
91884064 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
91884099 TCCCGAAGGG
Statistics
Matches: 356, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 212 0.60
49 144 0.40
ACGTcount: A:0.32, C:0.07, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:91885868 original size:40 final size:40
Alignment explanation
Indices: 91885665--91885856 Score: 231
Period size: 40 Copynumber: 4.8 Consensus size: 40
91885655 GAGAATTGAG
* * * *
91885665 AGTGAAATGTCCGGGCTAAATCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* *
91885705 AGTGATGTATCCGGGCTAAGTCTCGAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * * *
91885745 AGTGATGTATCCGGACTAAGTTCCAAAGAGCATTCGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* ** *
91885785 AGTGATATATCCGTGCTAAACCCCGAAGAGCATTTGTGCT
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
* * *
91885825 GGTGTTATATCCGGGCTAGGTCCCGAAGAGCA
1 AGTGATATATCCGGGCTAAGTCCCGAAGAGCA
91885857 ATCATGCTGG
Statistics
Matches: 130, Mismatches: 22, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 130 1.00
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
AGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
Found at i:91894043 original size:39 final size:39
Alignment explanation
Indices: 91894000--91894076 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 39
91893990 TCTGACTTAT
*
91894000 TTGAAAAATCATTTTGATGTGTTACAATGATTTTAACTA
1 TTGAAAAATCATTTTGATGTGTTAAAATGATTTTAACTA
*
91894039 TTGAAAAATCATTTTGATGTGTTAAAATTATTTTAACT
1 TTGAAAAATCATTTTGATGTGTTAAAATGATTTTAACT
91894077 TAATTAAGAT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 36 1.00
ACGTcount: A:0.36, C:0.06, G:0.12, T:0.45
Consensus pattern (39 bp):
TTGAAAAATCATTTTGATGTGTTAAAATGATTTTAACTA
Found at i:91894065 original size:20 final size:20
Alignment explanation
Indices: 91894003--91894065 Score: 58
Period size: 20 Copynumber: 3.2 Consensus size: 20
91893993 GACTTATTTG
91894003 AAAAATCATTTTGATGTGTT
1 AAAAATCATTTTGATGTGTT
* * * * *
91894023 -ACAATGATTTTAACTAT-TG
1 AAAAATCATTTTGA-TGTGTT
91894042 AAAAATCATTTTGATGTGTT
1 AAAAATCATTTTGATGTGTT
91894062 AAAA
1 AAAA
91894066 TTATTTTAAC
Statistics
Matches: 30, Mismatches: 10, Indels: 6
0.65 0.22 0.13
Matches are distributed among these distances:
19 13 0.43
20 17 0.57
ACGTcount: A:0.40, C:0.06, G:0.13, T:0.41
Consensus pattern (20 bp):
AAAAATCATTTTGATGTGTT
Found at i:91894089 original size:39 final size:38
Alignment explanation
Indices: 91894003--91894094 Score: 123
Period size: 39 Copynumber: 2.4 Consensus size: 38
91893993 GACTTATTTG
*
91894003 AAAAATCATTTTGATGTGTTACAATGATTTTAACTATT
1 AAAAATCATTTTGATGTGTTAAAATGATTTTAACTATT
*
91894041 GAAAAATCATTTTGATGTGTTAAAATTATTTTAACTTAATT
1 -AAAAATCATTTTGATGTGTTAAAATGATTTTAAC-T-ATT
*
91894082 -AAGATCATTTTGA
1 AAAAATCATTTTGA
91894095 ATTGGTTAAC
Statistics
Matches: 48, Mismatches: 3, Indels: 4
0.87 0.05 0.07
Matches are distributed among these distances:
39 44 0.92
40 1 0.02
41 3 0.06
ACGTcount: A:0.38, C:0.07, G:0.11, T:0.45
Consensus pattern (38 bp):
AAAAATCATTTTGATGTGTTAAAATGATTTTAACTATT
Found at i:91899340 original size:27 final size:27
Alignment explanation
Indices: 91899289--91899341 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
91899279 CAACTGTTAC
*
91899289 TGATTTTGAGAATGGGCTAGGCCCAAT
1 TGATTTTGAGAATGGGCTAGACCCAAT
91899316 TGATTTTGATG-A-GGGCTGAGACCCAA
1 TGATTTTGA-GAATGGGCT-AGACCCAA
91899342 GTGAAATTGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 5 0.22
27 17 0.74
28 1 0.04
ACGTcount: A:0.26, C:0.15, G:0.30, T:0.28
Consensus pattern (27 bp):
TGATTTTGAGAATGGGCTAGACCCAAT
Found at i:91901604 original size:225 final size:225
Alignment explanation
Indices: 91901210--91901884 Score: 1314
Period size: 225 Copynumber: 3.0 Consensus size: 225
91901200 GGTTCAAGTC
91901210 TTGGTTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAACCTAGACTTTGGCCTATAGACCTTA
1 TTGGTTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAACCTAGACTTTGGCCTATAGACCTTA
91901275 TAATTAATTGAGGCTAAAATGGTGACATAAAGAGCCTTGTGGTGTAGTGGCAAGGTGGAGTGTTG
66 TAATTAATTGAGGCTAAAATGGTGACATAAAGAGCCTTGTGGTGTAGTGGCAAGGTGGAGTGTTG
*
91901340 TGAAACTGTGAGGTCTAAGGTTCAAGTCTTGGTATTTCGCAATAGAGTATTTATTTTGCTGTTTG
131 TGAAACTGTGAGGTCTAAGGTTCAAGTCTTGGGATTTCGCAATAGAGTATTTATTTTGCTGTTTG
*
91901405 AGATGTGTAAGAAGTGGAGTTGGACTGGCA
196 AGATGTGTAAGAAGTGGAGTTGGACTGGAA
91901435 TTGGTTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAACCTAGACTTTGGCCTATAGACCTTA
1 TTGGTTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAACCTAGACTTTGGCCTATAGACCTTA
91901500 TAATTAATTGAGGCTAAAATGGTGACATAAAGAGCCTTGTGGTGTAGTGGCAAGGTGGAGTGTTG
66 TAATTAATTGAGGCTAAAATGGTGACATAAAGAGCCTTGTGGTGTAGTGGCAAGGTGGAGTGTTG
91901565 TGAAACTGTGAGGTCTAAGGTTCAAGTCTTGGGATTTCGCAATAGAGTATTTATTTTGCTGTTTG
131 TGAAACTGTGAGGTCTAAGGTTCAAGTCTTGGGATTTCGCAATAGAGTATTTATTTTGCTGTTTG
91901630 AGATGTGTAAGAAGTGGAGTTGGACTGGAA
196 AGATGTGTAAGAAGTGGAGTTGGACTGGAA
91901660 TTGGTTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAACCTAGACTTTGGCCTATAGACCTTA
1 TTGGTTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAACCTAGACTTTGGCCTATAGACCTTA
*
91901725 TAATTAATTGAGGCTAAAATGGTGACATAAAGAGCCTTGTGGTGTAGTGGCAAGGTGGCGTGTTG
66 TAATTAATTGAGGCTAAAATGGTGACATAAAGAGCCTTGTGGTGTAGTGGCAAGGTGGAGTGTTG
*
91901790 TGAAACTGTGAGGTCGAAGGTTCAAGTCTTGGGATTTCGCAATAGAGTATTTATTTTGCTGTTTG
131 TGAAACTGTGAGGTCTAAGGTTCAAGTCTTGGGATTTCGCAATAGAGTATTTATTTTGCTGTTTG
91901855 AGATGTGTAAGAAGTGGAGTTGGACTGGAA
196 AGATGTGTAAGAAGTGGAGTTGGACTGGAA
91901885 CTCTGTGGTT
Statistics
Matches: 446, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
225 446 1.00
ACGTcount: A:0.25, C:0.11, G:0.28, T:0.36
Consensus pattern (225 bp):
TTGGTTCTTGCAATTTATTTTGGTTTTTCTTTTAAAGGAACCTAGACTTTGGCCTATAGACCTTA
TAATTAATTGAGGCTAAAATGGTGACATAAAGAGCCTTGTGGTGTAGTGGCAAGGTGGAGTGTTG
TGAAACTGTGAGGTCTAAGGTTCAAGTCTTGGGATTTCGCAATAGAGTATTTATTTTGCTGTTTG
AGATGTGTAAGAAGTGGAGTTGGACTGGAA
Found at i:91907262 original size:40 final size:39
Alignment explanation
Indices: 91907178--91907362 Score: 151
Period size: 40 Copynumber: 4.6 Consensus size: 39
91907168 TCGAATGATG
* * *
91907178 TCCGGGCTAAGACCTGAAGGC-TTTGTGCTAAGTGAC-CAT
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGC-AAGTTACTAAT
*
91907217 ATCCGGACTAAGATCCGAAGGCATTTGTGCAAGTTACTAAT
1 -TCCGGGCTAAG-TCCGAAGGCATTTGTGCAAGTTACTAAT
* * ** *
91907258 TCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAT
* * *
91907297 TCCGGGTTAAGTCCCGAATGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCAAGTTACTAAT
* * *
91907336 AACCGGGCTATGTCCCGAAGACATTTG
1 -TCCGGGCTAAGT-CCGAAGGCATTTG
91907363 AACGAGTAGC
Statistics
Matches: 119, Mismatches: 21, Indels: 10
0.79 0.14 0.07
Matches are distributed among these distances:
39 34 0.29
40 74 0.62
41 11 0.09
ACGTcount: A:0.25, C:0.22, G:0.26, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCAAGTTACTAAT
Found at i:91907384 original size:79 final size:79
Alignment explanation
Indices: 91907231--91907385 Score: 172
Period size: 79 Copynumber: 2.0 Consensus size: 79
91907221 GGACTAAGAT
* * ***
91907231 CCGAAGGCATTTGTGCAAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGTGAGTTACTAA
1 CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGACATTGGAACGAGTTACTAA
91907296 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * * *
91907310 CCGAATGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGACATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCAAGTTACTAAT-ACCGGGCTAAG-CCCGAAGACATTGGAACGAGTTA-C
*
91907373 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
91907386 ATTCTGAAGG
Statistics
Matches: 63, Mismatches: 10, Indels: 6
0.80 0.13 0.08
Matches are distributed among these distances:
78 2 0.03
79 39 0.62
80 22 0.35
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCAAGTTACTAATACCGGGCTAAGCCCGAAGACATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:91919567 original size:21 final size:22
Alignment explanation
Indices: 91919527--91919573 Score: 60
Period size: 21 Copynumber: 2.2 Consensus size: 22
91919517 GGGCTCACAC
*
91919527 GCCCGTGTGGTCCATGGGACAA
1 GCCCGTGTGGACCATGGGACAA
* *
91919549 GCCCGTGT-GACCTTGGGACAT
1 GCCCGTGTGGACCATGGGACAA
91919570 GCCC
1 GCCC
91919574 ATGTTGGAGG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
21 14 0.64
22 8 0.36
ACGTcount: A:0.15, C:0.32, G:0.34, T:0.19
Consensus pattern (22 bp):
GCCCGTGTGGACCATGGGACAA
Found at i:91921560 original size:69 final size:69
Alignment explanation
Indices: 91921445--91921575 Score: 190
Period size: 69 Copynumber: 1.9 Consensus size: 69
91921435 TGGTCAAAAA
* *
91921445 AATGTCAGCAGAGTTTTAAGCAGTTGAAAGTGCTGTTAACTAAAGCACCAGTTCTGGTTCAACCC
1 AATGTCAGCAGAGTTTTAAGCAGTTGAAAGTACTGTCAACTAAAGCACCAGTTCTGGTTCAACCC
91921510 GAAT
66 GAAT
* * * * * *
91921514 AATGTTAGCAGAGTTTTGAGTAGTTGAAAGTACTGTCAACTGAAGCACCAGTTTTTGTTCAA
1 AATGTCAGCAGAGTTTTAAGCAGTTGAAAGTACTGTCAACTAAAGCACCAGTTCTGGTTCAA
91921576 TTAGAATCGG
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
69 54 1.00
ACGTcount: A:0.31, C:0.16, G:0.22, T:0.31
Consensus pattern (69 bp):
AATGTCAGCAGAGTTTTAAGCAGTTGAAAGTACTGTCAACTAAAGCACCAGTTCTGGTTCAACCC
GAAT
Found at i:91925297 original size:40 final size:40
Alignment explanation
Indices: 91925235--91925412 Score: 216
Period size: 40 Copynumber: 4.5 Consensus size: 40
91925225 AAGCCAAGTA
* * * *
91925235 CCTTCGGGATTTA-ACCGGATATAGCT-ACTCGCTCGAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
91925274 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACCAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
91925314 CCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * * **
91925354 CCTTCGGGACTTAGCCCAGATGTAGTCACTAGCGTAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
91925394 CCTTCGGGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
91925413 TTATCAGGGA
Statistics
Matches: 121, Mismatches: 16, Indels: 3
0.86 0.11 0.02
Matches are distributed among these distances:
39 12 0.10
40 109 0.90
ACGTcount: A:0.24, C:0.28, G:0.25, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:91925453 original size:60 final size:60
Alignment explanation
Indices: 91925359--91925472 Score: 192
Period size: 60 Copynumber: 1.9 Consensus size: 60
91925349 AAATGCCTTC
** *
91925359 GGGACTTAGCCCAGATGTAGTCACTAGCGTAAATGCCTTCGGGACTTAGCCCGGTTATCA
1 GGGACTTAGCCCAGAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGGTTATCA
*
91925419 GGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
1 GGGACTTAGCCCAGAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGG
91925473 ATGTAATAAC
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
60 50 1.00
ACGTcount: A:0.23, C:0.27, G:0.28, T:0.22
Consensus pattern (60 bp):
GGGACTTAGCCCAGAACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGGTTATCA
Found at i:91925492 original size:40 final size:40
Alignment explanation
Indices: 91925419--91925552 Score: 205
Period size: 40 Copynumber: 3.4 Consensus size: 40
91925409 CCGGTTATCA
91925419 GGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTC
1 GGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTC
** * * * *
91925459 GGGACTTAGCCCGGATGTAATAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTC
*
91925499 GGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTCC
1 GGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTC
91925539 GGGACTTAGCCCGG
1 GGGACTTAGCCCGG
91925553 TTATCATCCG
Statistics
Matches: 81, Mismatches: 13, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
40 81 1.00
ACGTcount: A:0.25, C:0.30, G:0.26, T:0.19
Consensus pattern (40 bp):
GGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTTC
Found at i:91925493 original size:100 final size:100
Alignment explanation
Indices: 91925319--91925512 Score: 284
Period size: 100 Copynumber: 1.9 Consensus size: 100
91925309 CAATGCCTTC
* * *
91925319 GGGACTTAGCCCGGATATAGTAGCTCGCACAAATGCCTTCGGGACTTAGCCCAGATGTAGTCACT
1 GGGACTTAGCCCGGATATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCAGATGTAATAACT
**
91925384 AGCGTAAATGCCTTCGGGACTTAGCCCGGTTATCA
66 AGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
* *
91925419 GGGACTTAGCCCGGA-ACTAGTCA-CTAGCGCAAATGCCTTCGGGACTTAGCCCGGATGTAATAA
1 GGGACTTAGCCCGGATA-TAGT-AGCTAGCACAAATGCCTTCGGGACTTAGCCCAGATGTAATAA
*
91925482 CTCGCACAAATGCCTTCGGGACTTAGCCCGG
64 CTAGCACAAATGCCTTCGGGACTTAGCCCGG
91925513 AACTAGTCAC
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
99 1 0.01
100 82 0.98
101 1 0.01
ACGTcount: A:0.24, C:0.27, G:0.26, T:0.22
Consensus pattern (100 bp):
GGGACTTAGCCCGGATATAGTAGCTAGCACAAATGCCTTCGGGACTTAGCCCAGATGTAATAACT
AGCACAAATGCCTTCGGGACTTAGCCCGGTTATCA
Found at i:91925533 original size:140 final size:140
Alignment explanation
Indices: 91925279--91925558 Score: 427
Period size: 140 Copynumber: 2.0 Consensus size: 140
91925269 GAATGCCTTC
* * * *
91925279 GGGACATAGCCCGGATATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCCGGATATAGTAGCT
1 GGGACATAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACT
** * *
91925344 CGCACAAATGCCTTCGGGACTTAGCCCAGATGTAGTCACTAGCGTAAATGCCTTCGGGACTTAGC
66 CGCACAAATGCCTTCGGGACTTAGCCCAGAACTAGTCACTAGCGCAAATGCCTCCGGGACTTAGC
91925409 CCGGTTATCA
131 CCGGTTATCA
* * * *
91925419 GGGACTTAGCCCGGA-ACTAGTCACTAGCGCAAATGCCTTCGGGACTTAGCCCGGATGTAATAAC
1 GGGACATAGCCCGGATA-TAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAAC
*
91925483 TCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAATGCCTCCGGGACTTAG
65 TCGCACAAATGCCTTCGGGACTTAGCCCAGAACTAGTCACTAGCGCAAATGCCTCCGGGACTTAG
91925548 CCCGGTTATCA
130 CCCGGTTATCA
91925559 TCCGAATATT
Statistics
Matches: 126, Mismatches: 13, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
139 1 0.01
140 125 0.99
ACGTcount: A:0.25, C:0.28, G:0.25, T:0.22
Consensus pattern (140 bp):
GGGACATAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAATAACT
CGCACAAATGCCTTCGGGACTTAGCCCAGAACTAGTCACTAGCGCAAATGCCTCCGGGACTTAGC
CCGGTTATCA
Found at i:91928680 original size:83 final size:83
Alignment explanation
Indices: 91928541--91928790 Score: 491
Period size: 83 Copynumber: 3.0 Consensus size: 83
91928531 TAAATGTGAG
*
91928541 GTCCTTAAGATGTAAATGGGCTATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
1 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
91928606 TTTAAATGAAATGAAAAA
66 TTTAAATGAAATGAAAAA
91928624 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
1 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
91928689 TTTAAATGAAATGAAAAA
66 TTTAAATGAAATGAAAAA
91928707 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
1 GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
91928772 TTTAAATGAAATGAAAAA
66 TTTAAATGAAATGAAAAA
91928790 G
1 G
91928791 GTTATATTAG
Statistics
Matches: 166, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 166 1.00
ACGTcount: A:0.37, C:0.09, G:0.22, T:0.32
Consensus pattern (83 bp):
GTCCTTAAGATGTAAATGGGCCATTGGAATTATGCATGGACAAAATTGGACATTACTTAGTGGTT
TTTAAATGAAATGAAAAA
Found at i:91932142 original size:23 final size:22
Alignment explanation
Indices: 91932091--91932142 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
91932081 CCTCGTCTTT
*
91932091 TTCTTTTGTTTCTTTTTCTAAC
1 TTCTTTTCTTTCTTTTTCTAAC
91932113 -TCATTTTCTCTTCTTTCTTC-AAC
1 TTC-TTTTCT-TTCTTT-TTCTAAC
91932136 TTCTTTT
1 TTCTTTT
91932143 TCAATTTTCT
Statistics
Matches: 25, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 2 0.08
22 5 0.20
23 13 0.52
24 5 0.20
ACGTcount: A:0.10, C:0.23, G:0.02, T:0.65
Consensus pattern (22 bp):
TTCTTTTCTTTCTTTTTCTAAC
Found at i:91946496 original size:60 final size:60
Alignment explanation
Indices: 91946423--91946544 Score: 217
Period size: 60 Copynumber: 2.0 Consensus size: 60
91946413 GTATCAAGTT
*
91946423 GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCTGTAGAGAA
1 GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCGGTAGAGAA
* *
91946483 GGTAATAAGGTATTCTTGAAAGTATCTCTATGGAAGAAGGTTTTGAGATTCGGTAGAGAA
1 GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCGGTAGAGAA
91946543 GG
1 GG
91946545 CAAGTTGAGT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
60 59 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.31
Consensus pattern (60 bp):
GGTAATAAGGTATTCTTGAAAGTATCTCCATGGAAGAAGGTTTTAAGATTCGGTAGAGAA
Found at i:91958642 original size:19 final size:19
Alignment explanation
Indices: 91958620--91958689 Score: 70
Period size: 19 Copynumber: 3.7 Consensus size: 19
91958610 TGTTACACAG
91958620 ATGAATTACTGTTATACGA
1 ATGAATTACTGTTATACGA
* * *
91958639 ATGAAGTACTGTTTATAAGG
1 ATGAATTACTG-TTATACGA
* *
91958659 ATGAGTTGCTGTTAT-CGA
1 ATGAATTACTGTTATACGA
*
91958677 ATGAATTATTGTT
1 ATGAATTACTGTT
91958690 TATATGATTA
Statistics
Matches: 39, Mismatches: 11, Indels: 3
0.74 0.21 0.06
Matches are distributed among these distances:
18 11 0.28
19 14 0.36
20 14 0.36
ACGTcount: A:0.31, C:0.07, G:0.21, T:0.40
Consensus pattern (19 bp):
ATGAATTACTGTTATACGA
Found at i:91958690 original size:38 final size:39
Alignment explanation
Indices: 91958619--91958693 Score: 107
Period size: 38 Copynumber: 1.9 Consensus size: 39
91958609 GTGTTACACA
91958619 GATGAATTACTGTTATACGAATGAAGTACTGTTTATAAG
1 GATGAATTACTGTTATACGAATGAAGTACTGTTTATAAG
* * * *
91958658 GATGAGTTGCTGTTAT-CGAATGAATTATTGTTTATA
1 GATGAATTACTGTTATACGAATGAAGTACTGTTTATA
91958694 TGATTAAGAG
Statistics
Matches: 32, Mismatches: 4, Indels: 1
0.86 0.11 0.03
Matches are distributed among these distances:
38 18 0.56
39 14 0.44
ACGTcount: A:0.32, C:0.07, G:0.21, T:0.40
Consensus pattern (39 bp):
GATGAATTACTGTTATACGAATGAAGTACTGTTTATAAG
Found at i:91960004 original size:42 final size:42
Alignment explanation
Indices: 91959926--91960010 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
91959916 GGTTTAGTCC
**
91959926 TGAACCACTCCTAAAGCATGTTTTAGGCATTGTAGGCTATTA
1 TGAACCACTCCTAAAGCATGTTTTAGGCATCATAGGCTATTA
* * *
91959968 TGAACCGCTCCTAAAGCATGTTTTAGGCCTCATAGGCTTTTA
1 TGAACCACTCCTAAAGCATGTTTTAGGCATCATAGGCTATTA
91960010 T
1 T
91960011 AAGGGACAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.26, C:0.21, G:0.19, T:0.34
Consensus pattern (42 bp):
TGAACCACTCCTAAAGCATGTTTTAGGCATCATAGGCTATTA
Found at i:91966753 original size:19 final size:19
Alignment explanation
Indices: 91966725--91966764 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
91966715 TTTCAAGAAT
*
91966725 ACTCTGTCCTCGAAGTGGA
1 ACTCTATCCTCGAAGTGGA
* *
91966744 ACTCTATCCTTGAATTGGA
1 ACTCTATCCTCGAAGTGGA
91966763 AC
1 AC
91966765 AAAATCAGAA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.25, C:0.25, G:0.20, T:0.30
Consensus pattern (19 bp):
ACTCTATCCTCGAAGTGGA
Found at i:91968817 original size:43 final size:42
Alignment explanation
Indices: 91968705--91968855 Score: 146
Period size: 43 Copynumber: 3.5 Consensus size: 42
91968695 CAATGCCAAC
* *
91968705 GTCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGCCACT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATAT-GATGCCA-T
* * *
91968748 ATCCCAGACAGGGTCTTGCACG-AAATCAAATATGATGCCGAT
1 GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCC-AT
* *
91968790 GTCCCAAACATGGTCTTACACGTAAATCATAAGT-TGATGCCAAC
1 GTCCCAGACATGGTCTTACACGTAAATCA-AA-TATGATGCC-AT
* *
91968834 GTCTCAGACGTGGTCTTACACG
1 GTCCCAGACATGGTCTTACACG
91968856 ATAACACATA
Statistics
Matches: 89, Mismatches: 14, Indels: 9
0.79 0.12 0.08
Matches are distributed among these distances:
42 25 0.28
43 34 0.38
44 29 0.33
45 1 0.01
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGTAAATCAAATATGATGCCAT
Found at i:91970989 original size:93 final size:93
Alignment explanation
Indices: 91970861--91971031 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
91970851 GCCCATAAGT
* * *
91970861 GAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91970926 TGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
*
91970954 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
91971019 CGAGTTCGGATGC
66 CGAGCTCGGATGC
91971032 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:91971028 original size:46 final size:46
Alignment explanation
Indices: 91970853--91971028 Score: 196
Period size: 46 Copynumber: 3.8 Consensus size: 46
91970843 TGTAACCCGC
* * *
91970853 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
* *
91970899 CCATAAGTGAACTCGGACTCAACTCAATGAGCTCGG--ATGC-CTAGTT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGC-A--T
* *** *
91970945 ACATCTCTCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGT-GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
91970992 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
91971029 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 13, Indels: 14
0.80 0.09 0.10
Matches are distributed among these distances:
43 1 0.01
44 3 0.03
46 70 0.64
47 31 0.28
49 4 0.04
50 1 0.01
ACGTcount: A:0.28, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:91972941 original size:30 final size:30
Alignment explanation
Indices: 91972897--91972985 Score: 101
Period size: 30 Copynumber: 3.0 Consensus size: 30
91972887 CAAAGATAAC
91972897 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
* *
91972926 GAGAAACCCAGAATAAAGAAATCC-AGAATA
1 AAGAAAACCAGAATAAAGAAATCCAAG-ATA
* * * *
91972956 AAGAGATCCAGGATAAAGAAACCCAAGATA
1 AAGAAAACCAGAATAAAGAAATCCAAGATA
91972986 CGATACTATG
Statistics
Matches: 50, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
29 9 0.18
30 39 0.78
31 2 0.04
ACGTcount: A:0.57, C:0.16, G:0.17, T:0.10
Consensus pattern (30 bp):
AAGAAAACCAGAATAAAGAAATCCAAGATA
Found at i:91972945 original size:15 final size:15
Alignment explanation
Indices: 91972897--91972976 Score: 92
Period size: 15 Copynumber: 5.4 Consensus size: 15
91972887 CAAAGATAAC
*
91972897 AAGAAAACC-GAATA
1 AAGAAATCCAGAATA
91972911 AAGAAATCCA-AGATA
1 AAGAAATCCAGA-ATA
* *
91972926 GAGAAACCCAGAATA
1 AAGAAATCCAGAATA
91972941 AAGAAATCCAGAATA
1 AAGAAATCCAGAATA
* *
91972956 AAGAGATCCAGGATA
1 AAGAAATCCAGAATA
91972971 AAGAAA
1 AAGAAA
91972977 CCCAAGATAC
Statistics
Matches: 55, Mismatches: 8, Indels: 5
0.81 0.12 0.07
Matches are distributed among these distances:
14 9 0.16
15 45 0.82
16 1 0.02
ACGTcount: A:0.59, C:0.14, G:0.17, T:0.10
Consensus pattern (15 bp):
AAGAAATCCAGAATA
Found at i:91972985 original size:15 final size:15
Alignment explanation
Indices: 91972908--91972985 Score: 79
Period size: 15 Copynumber: 5.2 Consensus size: 15
91972898 AGAAAACCGA
91972908 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* *
91972923 ATAGAGAAA-CCCAG
1 ATAAAGAAATCCAAG
91972937 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
91972952 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
91972968 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
91972983 ATA
1 ATA
91972986 CGATACTATG
Statistics
Matches: 52, Mismatches: 8, Indels: 6
0.79 0.12 0.09
Matches are distributed among these distances:
14 4 0.08
15 45 0.87
16 3 0.06
ACGTcount: A:0.56, C:0.15, G:0.17, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:91977129 original size:20 final size:20
Alignment explanation
Indices: 91977104--91977154 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
91977094 TAAAAAACCA
91977104 TCATCTAATGCCCATTTAAG
1 TCATCTAATGCCCATTTAAG
91977124 TCATCTAATGCCCATTTAAG
1 TCATCTAATGCCCATTTAAG
*
91977144 TCATTTAATGC
1 TCATCTAATGC
91977155 ATGCCATGGT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.29, C:0.24, G:0.10, T:0.37
Consensus pattern (20 bp):
TCATCTAATGCCCATTTAAG
Found at i:91979579 original size:10 final size:10
Alignment explanation
Indices: 91979563--91979620 Score: 64
Period size: 10 Copynumber: 5.7 Consensus size: 10
91979553 CAACTCCGAC
91979563 CAGCTCAATT
1 CAGCTCAATT
* *
91979573 GAGCTCATTT
1 CAGCTCAATT
91979583 CAGCTCAA-T
1 CAGCTCAATT
91979592 CGAGCTCAATT
1 C-AGCTCAATT
*
91979603 TAGCTACAATT
1 CAGCT-CAATT
91979614 CAGCTCA
1 CAGCTCA
91979621 TTTATTTTAT
Statistics
Matches: 39, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
9 2 0.05
10 27 0.69
11 10 0.26
ACGTcount: A:0.29, C:0.28, G:0.14, T:0.29
Consensus pattern (10 bp):
CAGCTCAATT
Found at i:91979586 original size:20 final size:20
Alignment explanation
Indices: 91979563--91979623 Score: 79
Period size: 20 Copynumber: 3.0 Consensus size: 20
91979553 CAACTCCGAC
91979563 CAGCTCAATTGAGCTCATTT
1 CAGCTCAATTGAGCTCATTT
*
91979583 CAGCTCAATCGAGCTCAATTT
1 CAGCTCAATTGAGCTC-ATTT
*
91979604 -AGCTACAATTCAGCTCATTT
1 CAGCT-CAATTGAGCTCATTT
91979624 ATTTTATTGG
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
20 23 0.64
21 13 0.36
ACGTcount: A:0.28, C:0.26, G:0.13, T:0.33
Consensus pattern (20 bp):
CAGCTCAATTGAGCTCATTT
Found at i:91984031 original size:38 final size:39
Alignment explanation
Indices: 91983966--91984090 Score: 198
Period size: 39 Copynumber: 3.2 Consensus size: 39
91983956 GGACTCTAGC
* * * *
91983966 CCGGACATATTTCCAACACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
91984005 CCGGTTATAATTCCAGC-CATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
91984043 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
91984082 CCGGATATA
1 CCGGATATA
91984091 CATCCCTGAA
Statistics
Matches: 79, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
38 36 0.46
39 43 0.54
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:91991864 original size:78 final size:77
Alignment explanation
Indices: 91991746--91991941 Score: 209
Period size: 78 Copynumber: 2.5 Consensus size: 77
91991736 ACTTGAAACC
** ** *
91991746 AATTACCAGCACA-AGCCTGCGAGAATTTAAACCCGGTATAATACCAGCTCGA-AGCCAGCGAGA
1 AATT-CCAGCACATAGCCTGCG-GACCTTAAGTCCGGTATAATACCAGCAC-ATAGCCAGCG-GA
*
91991809 -CTTTAGCCCGGACAT
62 CCTTAAGCCCGGACAT
* * * *
91991824 ATTTCCAGCACGTAGCCTGCGGACCTTAAGTCCGGTTATAATTCCAGCACATAGCCTGCGGACCT
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGG-TATAATACCAGCACATAGCCAGCGGACCT
* *
91991889 TAAGTCCGGATAT
65 TAAGCCCGGACAT
91991902 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGATATA
1 AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGG-TATA
91991942 CATCACTGAA
Statistics
Matches: 99, Mismatches: 15, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
77 20 0.20
78 79 0.80
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (77 bp):
AATTCCAGCACATAGCCTGCGGACCTTAAGTCCGGTATAATACCAGCACATAGCCAGCGGACCTT
AAGCCCGGACAT
Found at i:91991869 original size:39 final size:39
Alignment explanation
Indices: 91991816--91991941 Score: 216
Period size: 39 Copynumber: 3.2 Consensus size: 39
91991806 AGACTTTAGC
* * *
91991816 CCGGACATATTTCCAGCACGTAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
*
91991855 CCGGTTATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
91991894 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
1 CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
91991933 CCGGATATA
1 CCGGATATA
91991942 CATCACTGAA
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
CCGGATATAATTCCAGCACATAGCCTGCGGACCTTAAGT
Found at i:91998950 original size:40 final size:40
Alignment explanation
Indices: 91998852--91999114 Score: 343
Period size: 40 Copynumber: 6.6 Consensus size: 40
91998842 TCCTCGTTCA
* * ** *
91998852 AATGCCTTCGGGACATAGCCCGGATTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* *
91998891 AATGCCTTCGGGACATAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
91998931 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
91998971 TATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
91999011 AATGCCTTCGGGACTTAACCCGGATTTAACAATTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
91999051 AATGCCTTCGGAACTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGACTTAACCCGGATTTA-ACAAC-TCGCACG
* *
91999091 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
91999115 CAGCATTCAA
Statistics
Matches: 201, Mismatches: 20, Indels: 5
0.89 0.09 0.02
Matches are distributed among these distances:
39 34 0.17
40 161 0.80
41 6 0.03
ACGTcount: A:0.28, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:92001853 original size:78 final size:78
Alignment explanation
Indices: 92001764--92001916 Score: 184
Period size: 78 Copynumber: 2.0 Consensus size: 78
92001754 TTAAACCCGG
* * * * * *
92001764 TATAATACCAGCTCGA-AGCCTGCGGGA-CTTTAGCCCGGACATATTTCTAGCACGTAGCCTGCG
1 TATAATACCAGCAC-ATAGCCTGC-AGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCG
*
92001827 TACCTTAAGTCCAGT
64 GACCTTAAGTCCAGT
* * *
92001842 TATAATTCCAGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCCAGCACATAGCCTGCGGA
1 TATAATACCAGCACATAGCCTGCAGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
92001907 CCTTAAGTCC
66 CCTTAAGTCC
92001917 GGATATACAT
Statistics
Matches: 63, Mismatches: 10, Indels: 4
0.82 0.13 0.05
Matches are distributed among these distances:
77 3 0.05
78 60 0.95
ACGTcount: A:0.27, C:0.29, G:0.20, T:0.25
Consensus pattern (78 bp):
TATAATACCAGCACATAGCCTGCAGACCTTAAGCCCGGACATAATTCCAGCACATAGCCTGCGGA
CCTTAAGTCCAGT
Found at i:92001855 original size:39 final size:38
Alignment explanation
Indices: 92001812--92001923 Score: 161
Period size: 39 Copynumber: 2.9 Consensus size: 38
92001802 ACATATTTCT
* *
92001812 AGCACGTAGCCTGCGTACCTTAAGTCCAGTTATAATTCC
1 AGCACATAGCCTGCG-ACCTTAAGTCCAGATATAATTCC
*
92001851 AGCACATAGCCTGCAGACCTTAAGTCCGGATATAATTCC
1 AGCACATAGCCTGC-GACCTTAAGTCCAGATATAATTCC
*
92001890 AGCACATAGCCTGCGGACCTTAAGTCCGGATATA
1 AGCACATAGCCTGC-GACCTTAAGTCCAGATATA
92001924 CATCACTGAA
Statistics
Matches: 68, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
39 67 0.99
40 1 0.01
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (38 bp):
AGCACATAGCCTGCGACCTTAAGTCCAGATATAATTCC
Found at i:92005387 original size:67 final size:67
Alignment explanation
Indices: 92005279--92005409 Score: 262
Period size: 67 Copynumber: 2.0 Consensus size: 67
92005269 CTAGTATACC
92005279 TAGTCAATTTTGTTATGATGAAATTGATGAACAAGGTGTGTATATGTGATAAGGCCTAATGGCCG
1 TAGTCAATTTTGTTATGATGAAATTGATGAACAAGGTGTGTATATGTGATAAGGCCTAATGGCCG
92005344 AT
66 AT
92005346 TAGTCAATTTTGTTATGATGAAATTGATGAACAAGGTGTGTATATGTGATAAGGCCTAATGGCC
1 TAGTCAATTTTGTTATGATGAAATTGATGAACAAGGTGTGTATATGTGATAAGGCCTAATGGCC
92005410 AATGTGATGA
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
67 64 1.00
ACGTcount: A:0.31, C:0.09, G:0.25, T:0.34
Consensus pattern (67 bp):
TAGTCAATTTTGTTATGATGAAATTGATGAACAAGGTGTGTATATGTGATAAGGCCTAATGGCCG
AT
Found at i:92005440 original size:47 final size:47
Alignment explanation
Indices: 92005381--92005590 Score: 312
Period size: 47 Copynumber: 4.5 Consensus size: 47
92005371 GATGAACAAG
*
92005381 GTGTGTATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
92005428 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATCTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
*
92005475 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
* * * * *
92005522 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
92005569 GTGTATATATGTGATAAGGCCT
1 GTGTATATATGTGATAAGGCCT
92005591 TTGTGCTGAA
Statistics
Matches: 145, Mismatches: 18, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 145 1.00
ACGTcount: A:0.31, C:0.10, G:0.30, T:0.29
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
Found at i:92005853 original size:25 final size:25
Alignment explanation
Indices: 92005803--92005853 Score: 59
Period size: 25 Copynumber: 2.0 Consensus size: 25
92005793 TGTGTGACAA
* *
92005803 CAAATGAATAGGGGCACTATGTGTG
1 CAAATGAATAGAGGCACTATGAGTG
*
92005828 CAAATGATTAGAGGCACTGA-GAGTG
1 CAAATGAATAGAGGCACT-ATGAGTG
92005853 C
1 C
92005854 GAGTTCTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
25 21 0.95
26 1 0.05
ACGTcount: A:0.33, C:0.14, G:0.31, T:0.22
Consensus pattern (25 bp):
CAAATGAATAGAGGCACTATGAGTG
Found at i:92008288 original size:37 final size:37
Alignment explanation
Indices: 92008238--92008311 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
92008228 GGATAAGAAG
92008238 CTAACTAATAATATGCTAAGGTAGTCATGTGAATAAT
1 CTAACTAATAATATGCTAAGGTAGTCATGTGAATAAT
*
92008275 CTAACTAATAATATGCTAAGGTAGTCATGTGGATAAT
1 CTAACTAATAATATGCTAAGGTAGTCATGTGAATAAT
92008312 TGGCTTTGTG
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.39, C:0.11, G:0.18, T:0.32
Consensus pattern (37 bp):
CTAACTAATAATATGCTAAGGTAGTCATGTGAATAAT
Found at i:92009592 original size:47 final size:47
Alignment explanation
Indices: 92009533--92009785 Score: 371
Period size: 47 Copynumber: 5.4 Consensus size: 47
92009523 GATGTACAAG
* * *
92009533 GTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
92009580 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * *
92009627 GTGTATATATGTGATAAGGCCGAGTGGCCAACGTGATGAATTTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
* * * * * *
92009674 GTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAG
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
92009721 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAA
1 GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
*
92009768 GTGTATAAATGTGATAAG
1 GTGTATATATGTGATAAG
92009786 TCCCGAAGGG
Statistics
Matches: 185, Mismatches: 21, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
47 185 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (47 bp):
GTGTATATATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAA
Found at i:92009784 original size:141 final size:141
Alignment explanation
Indices: 92009530--92009785 Score: 449
Period size: 141 Copynumber: 1.8 Consensus size: 141
92009520 ATTGATGTAC
* * *
92009530 AAGGTGTGTATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
1 AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
92009595 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCGAGTGGCCAACG
66 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAGTGGCCAACG
92009660 TGATGAATTTG
131 TGATGAATTTG
* *
92009671 AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGGATGTGAAGGTGTATATATGTGAT
1 AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
*
92009736 AAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATAAATGTGATAAG
66 AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAG
92009786 TCCCGAAGGG
Statistics
Matches: 108, Mismatches: 7, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
141 108 1.00
ACGTcount: A:0.32, C:0.08, G:0.31, T:0.28
Consensus pattern (141 bp):
AAGGTGTATATATGAGATAAGACCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGAT
AAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATAAATGTGATAAGGCCGAGTGGCCAACG
TGATGAATTTG
Found at i:92037729 original size:10 final size:10
Alignment explanation
Indices: 92037714--92037822 Score: 54
Period size: 10 Copynumber: 10.7 Consensus size: 10
92037704 AACTTTTTAG
92037714 AAATTATTAA
1 AAATTATTAA
92037724 AAATTA--AA
1 AAATTATTAA
92037732 AAATATAACTTAAA
1 AAAT-T-A-TT-AA
92037746 GAAAATTATTAA
1 -A-AATTATTAA
92037758 AAA-TA---A
1 AAATTATTAA
92037764 AAA-TATTAA
1 AAATTATTAA
*
92037773 AAATTAATAGA
1 AAATTATTA-A
*
92037784 AATTTATTAAAA
1 AAATTATT--AA
92037796 AAATTATTAA
1 AAATTATTAA
92037806 AAAGTTA-TAA
1 AAA-TTATTAA
92037816 AAATTAT
1 AAATTAT
92037823 AGAAAAATTG
Statistics
Matches: 78, Mismatches: 4, Indels: 34
0.67 0.03 0.29
Matches are distributed among these distances:
6 6 0.08
8 6 0.08
9 10 0.13
10 24 0.31
11 11 0.14
12 10 0.13
13 3 0.04
14 3 0.04
15 2 0.03
16 3 0.04
ACGTcount: A:0.63, C:0.01, G:0.03, T:0.33
Consensus pattern (10 bp):
AAATTATTAA
Found at i:92037741 original size:34 final size:33
Alignment explanation
Indices: 92037714--92037796 Score: 103
Period size: 36 Copynumber: 2.4 Consensus size: 33
92037704 AACTTTTTAG
92037714 AAATTATTAAAAATTAAAAAATATAACTTAAAGA
1 AAATTATTAAAAA-TAAAAAATATAACTTAAAGA
* *
92037748 AAATTATTAAAAATAAAAATATTAAAAATTAATAGA
1 AAATTATTAAAAATAAAAA-A-TATAACTTAA-AGA
*
92037784 AATTTATTAAAAA
1 AAATTATTAAAAA
92037797 AATTATTAAA
Statistics
Matches: 43, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
33 6 0.14
34 14 0.33
35 8 0.19
36 15 0.35
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.31
Consensus pattern (33 bp):
AAATTATTAAAAATAAAAAATATAACTTAAAGA
Found at i:92037770 original size:15 final size:15
Alignment explanation
Indices: 92037747--92037776 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
92037737 TAACTTAAAG
*
92037747 AAAATTATTAAAAAT
1 AAAAATATTAAAAAT
92037762 AAAAATATTAAAAAT
1 AAAAATATTAAAAAT
92037777 TAATAGAAAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.70, C:0.00, G:0.00, T:0.30
Consensus pattern (15 bp):
AAAAATATTAAAAAT
Found at i:92037801 original size:23 final size:22
Alignment explanation
Indices: 92037771--92037818 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 22
92037761 TAAAAATATT
* *
92037771 AAAAATTAATAGAAATTTATTAA
1 AAAAATTAATAAAAAGTTA-TAA
*
92037794 AAAAATTATTAAAAAGTTATAA
1 AAAAATTAATAAAAAGTTATAA
92037816 AAA
1 AAA
92037819 TTATAGAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (22 bp):
AAAAATTAATAAAAAGTTATAA
Found at i:92037813 original size:11 final size:10
Alignment explanation
Indices: 92037761--92037822 Score: 56
Period size: 10 Copynumber: 6.0 Consensus size: 10
92037751 TTATTAAAAA
92037761 TAAAAA-TAT
1 TAAAAATTAT
*
92037770 TAAAAATTAA
1 TAAAAATTAT
*
92037780 TAGAAATTTAT
1 TA-AAAATTAT
92037791 TAAAAAAATTAT
1 T--AAAAATTAT
92037803 TAAAAAGTTA-
1 TAAAAA-TTAT
92037813 TAAAAATTAT
1 TAAAAATTAT
92037823 AGAAAAATTG
Statistics
Matches: 43, Mismatches: 4, Indels: 11
0.74 0.07 0.19
Matches are distributed among these distances:
9 9 0.21
10 15 0.35
11 10 0.23
12 8 0.19
13 1 0.02
ACGTcount: A:0.61, C:0.00, G:0.03, T:0.35
Consensus pattern (10 bp):
TAAAAATTAT
Found at i:92037829 original size:33 final size:33
Alignment explanation
Indices: 92037747--92037829 Score: 80
Period size: 33 Copynumber: 2.5 Consensus size: 33
92037737 TAACTTAAAG
92037747 AAAATTATTAAAAATAAAAATATTAAAAATTAATA
1 AAAATTA-TAAAAA-AAAAATATTAAAAATTAATA
* * *
92037782 GAAATT-TATTAAAAAAATTATTAAAAAGTT-ATA
1 AAAATTATA-AAAAAAAAATATTAAAAA-TTAATA
*
92037815 AAAATTATAGAAAAA
1 AAAATTATAAAAAAA
92037830 TTGTTAGCTT
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
33 28 0.70
34 7 0.17
35 5 0.12
ACGTcount: A:0.65, C:0.00, G:0.04, T:0.31
Consensus pattern (33 bp):
AAAATTATAAAAAAAAAATATTAAAAATTAATA
Found at i:92037835 original size:23 final size:23
Alignment explanation
Indices: 92037770--92037835 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 23
92037760 ATAAAAATAT
* *
92037770 TAAAAATTAATAG-AAATTTATTA
1 TAAAAATT-ATAGAAAAATTGTTA
* *
92037793 AAAAAATTAT-TAAAAA--GTTA
1 TAAAAATTATAGAAAAATTGTTA
92037813 TAAAAATTATAGAAAAATTGTTA
1 TAAAAATTATAGAAAAATTGTTA
92037836 GCTTGTTGGT
Statistics
Matches: 33, Mismatches: 6, Indels: 8
0.70 0.13 0.17
Matches are distributed among these distances:
20 12 0.36
21 5 0.15
22 5 0.15
23 11 0.33
ACGTcount: A:0.59, C:0.00, G:0.06, T:0.35
Consensus pattern (23 bp):
TAAAAATTATAGAAAAATTGTTA
Found at i:92038905 original size:40 final size:40
Alignment explanation
Indices: 92038845--92038991 Score: 231
Period size: 40 Copynumber: 3.7 Consensus size: 40
92038835 CCAACCCAAT
* * * *
92038845 TGCCTTCGGGATTTAGCCCGGATATAACAAACAGCACAAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
* *
92038885 TGCCTTTGGGACTTAACCCGGATATAACAACCAGGACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
92038925 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
1 TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
*
92038965 TGCCTTCGGGACTTAACCCGAATATAA
1 TGCCTTCGGGACTTAACCCGGATATAA
92038992 TCCTCAATTG
Statistics
Matches: 98, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 98 1.00
ACGTcount: A:0.33, C:0.27, G:0.20, T:0.20
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATATAACAACCAGCACGAA
Found at i:92043260 original size:20 final size:21
Alignment explanation
Indices: 92043226--92043265 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
92043216 CCCTTGAAAT
92043226 AGGGCACACGCCCG-TGTGGA
1 AGGGCACACGCCCGTTGTGGA
92043246 AGGGCAACACG-CCGTTGTGG
1 AGGGC-ACACGCCCGTTGTGG
92043266 CCACTATGAC
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
20 8 0.44
21 10 0.56
ACGTcount: A:0.20, C:0.28, G:0.40, T:0.12
Consensus pattern (21 bp):
AGGGCACACGCCCGTTGTGGA
Found at i:92047873 original size:56 final size:56
Alignment explanation
Indices: 92047783--92047891 Score: 157
Period size: 56 Copynumber: 1.9 Consensus size: 56
92047773 TTACTTGAAA
*
92047783 TCACATATCGATGCCAACGTACTAAACTTTGTCTTACTCACACACATATATCGGAG
1 TCACATATCGATGCCAACGTACTAAACTTGGTCTTACTCACACACATATATCGGAG
* ** *
92047839 TCACATATCGATGCCAACGTATTAAA-TGTGGTCTTACTGGCCCACATATATCG
1 TCACATATCGATGCCAACGTACTAAACT-TGGTCTTACTCACACACATATATCG
92047892 ATGCCATGGT
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
55 1 0.02
56 46 0.98
ACGTcount: A:0.30, C:0.26, G:0.15, T:0.29
Consensus pattern (56 bp):
TCACATATCGATGCCAACGTACTAAACTTGGTCTTACTCACACACATATATCGGAG
Found at i:92056209 original size:46 final size:44
Alignment explanation
Indices: 92056123--92056245 Score: 131
Period size: 46 Copynumber: 2.7 Consensus size: 44
92056113 ACATATCTGT
*
92056123 GCCGATGCCATGTCCTAGACATGGTCTTACACTGACACATCTC-ATA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACATCTCGA-A
* * * *
92056169 GCCGATGCATGTCCCAAACATGTTTTACACTGGCTTACATCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGAC--ACATCTCGAA
* *
92056215 GCTGATGCATGTCTCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
92056246 AGCTCTCGTC
Statistics
Matches: 65, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
44 11 0.17
45 12 0.18
46 41 0.63
47 1 0.02
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.28
Consensus pattern (44 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGACACATCTCGAA
Found at i:92066989 original size:40 final size:40
Alignment explanation
Indices: 92066889--92067060 Score: 222
Period size: 40 Copynumber: 4.3 Consensus size: 40
92066879 GCTCCTCGTT
* * *
92066889 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
*
92066929 C-AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
92066968 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
92067008 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
92067048 CAAATGCCTTCGG
1 CAAATGCCTTCGG
92067061 ATCTTAGTCC
Statistics
Matches: 119, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.29
40 80 0.67
41 4 0.03
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:92073536 original size:41 final size:41
Alignment explanation
Indices: 92073400--92073529 Score: 210
Period size: 41 Copynumber: 3.2 Consensus size: 41
92073390 GTTTGACCAA
92073400 AAACGCCGCT-AAAAACAGAGCAATAGCGGCGTTTTTGGTC
1 AAACGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGGTC
*
92073440 AAACGCCGCTAAAAAACATAGCAATAGCGGCGTTTTTGGTC
1 AAACGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGGTC
*
92073481 AAACGCCGCTAAAAAACTA-AGCAATAGCGGCGTTTTTGCTC
1 AAACGCCGCTAAAAAAC-AGAGCAATAGCGGCGTTTTTGGTC
92073522 AAAACGCC
1 -AAACGCC
92073530 ACAAAAAGTC
Statistics
Matches: 85, Mismatches: 2, Indels: 4
0.93 0.02 0.04
Matches are distributed among these distances:
40 10 0.12
41 67 0.79
42 8 0.09
ACGTcount: A:0.35, C:0.24, G:0.22, T:0.20
Consensus pattern (41 bp):
AAACGCCGCTAAAAAACAGAGCAATAGCGGCGTTTTTGGTC
Found at i:92073594 original size:46 final size:46
Alignment explanation
Indices: 92073541--92073671 Score: 156
Period size: 47 Copynumber: 2.8 Consensus size: 46
92073531 CAAAAAGTCA
*
92073541 TATAACCCCTAAAATCCTAAACCCAAAAAAATCATAAACACTAATC
1 TATAACCCTTAAAATCCTAAACCCAAAAAAATCATAAACACTAATC
* **
92073587 TATAACCCTTAAAATCCCTAACCCCTTAAAAA-CACTAAACACTAATC
1 TATAACCCTTAAAAT-CCTAAACCCAAAAAAATCA-TAAACACTAATC
** *
92073634 TATAACTTTTAAAACCCTAAACCCCAAAAAACATCATA
1 TATAACCCTTAAAATCCTAAA-CCCAAAAAA-ATCATA
92073672 TGGATGTTGA
Statistics
Matches: 70, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
46 21 0.30
47 44 0.63
48 3 0.04
49 2 0.03
ACGTcount: A:0.49, C:0.29, G:0.00, T:0.22
Consensus pattern (46 bp):
TATAACCCTTAAAATCCTAAACCCAAAAAAATCATAAACACTAATC
Found at i:92073824 original size:15 final size:15
Alignment explanation
Indices: 92073795--92073838 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
92073785 ATATTTAAGA
*
92073795 TTTAAGG-TCTATGG
1 TTTAAGGTTTTATGG
*
92073809 TTTAGGGTTTTATGG
1 TTTAAGGTTTTATGG
*
92073824 TTTAAGGTTTAATGG
1 TTTAAGGTTTTATGG
92073839 CCATGGGTAG
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.20, C:0.02, G:0.30, T:0.48
Consensus pattern (15 bp):
TTTAAGGTTTTATGG
Found at i:92073980 original size:37 final size:37
Alignment explanation
Indices: 92073930--92074060 Score: 201
Period size: 37 Copynumber: 3.5 Consensus size: 37
92073920 TTTTCGTTTG
92073930 TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
* *
92073967 TCGCCTTTGCCCCGTGCATCGCAACCCAGCCCCTCCA
1 TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
* *
92074004 TTGCCTTCGCCCCGTGCGA-CGCAACCCATCTCCTCCA
1 TCGCCTTCGCCCCGTGC-ATCGCAACCCATCCCCTCCA
*
92074041 TCGCCTTCGCCCTGTGCATC
1 TCGCCTTCGCCCCGTGCATC
92074061 TGCTGCATAG
Statistics
Matches: 84, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
36 1 0.01
37 82 0.98
38 1 0.01
ACGTcount: A:0.12, C:0.50, G:0.16, T:0.21
Consensus pattern (37 bp):
TCGCCTTCGCCCCGTGCATCGCAACCCATCCCCTCCA
Found at i:92074386 original size:7 final size:7
Alignment explanation
Indices: 92074374--92074413 Score: 80
Period size: 7 Copynumber: 5.7 Consensus size: 7
92074364 AATCTTCAAA
92074374 AAAAATT
1 AAAAATT
92074381 AAAAATT
1 AAAAATT
92074388 AAAAATT
1 AAAAATT
92074395 AAAAATT
1 AAAAATT
92074402 AAAAATT
1 AAAAATT
92074409 AAAAA
1 AAAAA
92074414 ACTTAAACCA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (7 bp):
AAAAATT
Found at i:92078554 original size:15 final size:15
Alignment explanation
Indices: 92078534--92078562 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
92078524 AATTCAATTT
92078534 ATAATTTGTTGCTAC
1 ATAATTTGTTGCTAC
92078549 ATAATTTGTTGCTA
1 ATAATTTGTTGCTA
92078563 ATATTCTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.10, G:0.14, T:0.48
Consensus pattern (15 bp):
ATAATTTGTTGCTAC
Found at i:92079340 original size:31 final size:33
Alignment explanation
Indices: 92079302--92079373 Score: 91
Period size: 31 Copynumber: 2.3 Consensus size: 33
92079292 TTGTTGTATT
92079302 TTATTTATTTTTA-TATTT-AATCTA-ATTTTTA
1 TTATTTATTTTTAGT-TTTGAATCTATATTTTTA
*
92079333 TTATTTA-TTTTAGTTTTGATTCTATATTTTTA
1 TTATTTATTTTTAGTTTTGAATCTATATTTTTA
92079365 TT-TTTATTT
1 TTATTTATTT
92079374 AATAATGAAT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
30 8 0.22
31 17 0.47
32 11 0.31
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (33 bp):
TTATTTATTTTTAGTTTTGAATCTATATTTTTA
Found at i:92079349 original size:19 final size:18
Alignment explanation
Indices: 92079301--92079372 Score: 58
Period size: 19 Copynumber: 3.9 Consensus size: 18
92079291 CTTGTTGTAT
92079301 TTTA-TTTATTTTTA-TA
1 TTTATTTTATTTTTATTA
* *
92079317 TTTAATCTAATTTTTATTA
1 TTT-ATTTTATTTTTATTA
* *
92079336 TTTATTTTAGTTTTGATTC
1 TTTATTTTA-TTTTTATTA
*
92079355 TATATTTTTATTTTTATT
1 TTTA-TTTTATTTTTATT
92079373 TAATAATGAA
Statistics
Matches: 43, Mismatches: 8, Indels: 7
0.74 0.14 0.12
Matches are distributed among these distances:
16 3 0.07
17 1 0.02
18 12 0.28
19 22 0.51
20 5 0.12
ACGTcount: A:0.24, C:0.03, G:0.03, T:0.71
Consensus pattern (18 bp):
TTTATTTTATTTTTATTA
Found at i:92079366 original size:6 final size:6
Alignment explanation
Indices: 92079305--92079373 Score: 50
Period size: 6 Copynumber: 11.2 Consensus size: 6
92079295 TTGTATTTTA
* * * * *
92079305 TTTATT TTTATA TTTAAT CTAATT TTTATT ATTTA-T TTTAGTT TTGATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT -TTTATT TTTA-TT TTTATT
*
92079354 CTATATT TTTATT TTTATT T
1 -TTTATT TTTATT TTTATT T
92079374 AATAATGAAT
Statistics
Matches: 47, Mismatches: 12, Indels: 8
0.70 0.18 0.12
Matches are distributed among these distances:
5 4 0.09
6 31 0.66
7 12 0.26
ACGTcount: A:0.23, C:0.03, G:0.03, T:0.71
Consensus pattern (6 bp):
TTTATT
Found at i:92079566 original size:43 final size:43
Alignment explanation
Indices: 92079505--92079735 Score: 182
Period size: 43 Copynumber: 5.3 Consensus size: 43
92079495 TTTAAATTTT
* *
92079505 ATGACCTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCA
1 ATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGCA
* ** *
92079548 ATGACTTTTAG-GGACGTTTGTGGAAAAAGCGTTGCTAAAGGCC
1 ATGACCTTTAGCGG-CGTTTGTGGAAAAAGCGCCGCTAAAGGCA
** * * ** *
92079591 ATGGTCTTTAGCGGCGTTTGTGAAAAAAGCGCCGTTAAATTCC
1 ATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGCA
* * * * * *
92079634 ATGGACTTTTAGTGGCGTTTGTAGATAAAGCGCTGCTAAAAGTC-
1 AT-GACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCT-AAAGGCA
* * * *
92079678 ATGGA-CTTTAGCGGCGTTTGTGGATAAAGCGTCGTTAAAGATC-
1 AT-GACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAG-GCA
92079721 ATGACCTTTAGCGGC
1 ATGACCTTTAGCGGC
92079736 ATTTTTTTAA
Statistics
Matches: 151, Mismatches: 31, Indels: 12
0.78 0.16 0.06
Matches are distributed among these distances:
42 8 0.05
43 106 0.70
44 32 0.21
45 5 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.29
Consensus pattern (43 bp):
ATGACCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGGCA
Found at i:92079671 original size:87 final size:86
Alignment explanation
Indices: 92079510--92079717 Score: 256
Period size: 87 Copynumber: 2.4 Consensus size: 86
92079500 ATTTTATGAC
* * * *
92079510 CTTTAGCGGCGTTTTTGGGAAAAGCGCCGCTAAAGGCAATGACTTTTAGGGACGTTTGTGGAAAA
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGTTAAAGGCAATGACTTTTAGGGACGTTTGTAGAAAA
* * *
92079575 AGCGTTGCTAAAGGCCATGGT
66 AGCGCTGCTAAAAGCCATGGA
* ** * *
92079596 CTTTAGCGGCGTTTGTGAAAAAAGCGCCGTTAAATTCCATGGACTTTTAGTGG-CGTTTGTAGAT
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGTTAAAGGCAAT-GACTTTTAG-GGACGTTTGTAGAA
*
92079660 AAAGCGCTGCTAAAAGTCATGGA
64 AAAGCGCTGCTAAAAGCCATGGA
* *
92079683 CTTTAGCGGCGTTTGTGGATAAAGCGTCGTTAAAG
1 CTTTAGCGGCGTTTGTGGAAAAAGCGCCGTTAAAG
92079718 ATCATGACCT
Statistics
Matches: 103, Mismatches: 17, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
86 33 0.32
87 68 0.66
88 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.29, T:0.29
Consensus pattern (86 bp):
CTTTAGCGGCGTTTGTGGAAAAAGCGCCGTTAAAGGCAATGACTTTTAGGGACGTTTGTAGAAAA
AGCGCTGCTAAAAGCCATGGA
Found at i:92081208 original size:37 final size:37
Alignment explanation
Indices: 92081152--92081254 Score: 170
Period size: 37 Copynumber: 2.8 Consensus size: 37
92081142 CGAATAGTCC
* *
92081152 CCACAGGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
* *
92081189 CTACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
92081226 CCACACGTAGTCATCGGGTCTTACCCGGA
1 CCACACGTAGTCATCGGGTCTTACCCGGA
92081255 ATATATTTCC
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 61 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTCATCGGGTCTTACCCGGACAAAATCT
Found at i:92081559 original size:49 final size:48
Alignment explanation
Indices: 92081424--92081592 Score: 275
Period size: 48 Copynumber: 3.5 Consensus size: 48
92081414 CTAGCCGAAT
*
92081424 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
92081472 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
92081520 CACTAGTCATTCGACTTTTACCACAAATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGC-TTTACCACATATACATATCTCATACATATTTCA
*
92081569 CACTAGTCATTCGGCTTTACCACA
1 CACTAGCCATTCGGCTTTACCACA
92081593 CACATTTATA
Statistics
Matches: 113, Mismatches: 7, Indels: 2
0.93 0.06 0.02
Matches are distributed among these distances:
48 67 0.59
49 46 0.41
ACGTcount: A:0.31, C:0.28, G:0.07, T:0.34
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:92085078 original size:46 final size:46
Alignment explanation
Indices: 92085025--92085161 Score: 202
Period size: 46 Copynumber: 3.0 Consensus size: 46
92085015 TATATATACA
* * * *
92085025 CATCTCATACATATCTCACATTAGCCATTTGGCTTTACCACATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
92085071 CATCTCATACACGTTTCGCATTAGCCATTCGGCTTTACCTCATATC
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
* *
92085117 TATCTCATACACATTTCGCATTAGCCATTCGGCCTTACCACATAT
1 CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATAT
92085162 ATACATGTTC
Statistics
Matches: 81, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
46 81 1.00
ACGTcount: A:0.26, C:0.31, G:0.09, T:0.34
Consensus pattern (46 bp):
CATCTCATACACATTTCGCATTAGCCATTCGGCTTTACCACATATC
Found at i:92085200 original size:47 final size:47
Alignment explanation
Indices: 92085135--92085329 Score: 228
Period size: 47 Copynumber: 4.1 Consensus size: 47
92085125 ACACATTTCG
*
92085135 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
* * * **
92085182 CATTGGCCATTCGACCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
* *
92085229 CATTGGCCATTCGGCCTTATCCCGCATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTA---C-CACATATATACATGTTCACATTCATCA
* * * ** *
92085280 CATTTGCCATTCGGCCTTATCTCATATATACACATTCGCATTCATCA
1 CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
92085327 CAT
1 CAT
92085330 AAAATCTTAA
Statistics
Matches: 124, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
47 84 0.68
51 40 0.32
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCA
Found at i:92085322 original size:98 final size:94
Alignment explanation
Indices: 92085135--92085329 Score: 246
Period size: 98 Copynumber: 2.0 Consensus size: 94
92085125 ACACATTTCG
*
92085135 CATTAGCCATTCGGCCTTACCACATATATACATGTTCACATTCATCACATTGGCCATTCGACCTT
1 CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTT
* **
92085200 ATCACACATACGCATGTTCACATTCATCA
66 ATCACACATACACACATTCACATTCATCA
* * * *
92085229 CATTGGCCATTCGGCCTTATCCCGCATATATATACAGGTTCACATTCATCACATTTGCCATTCGG
1 CATTAGCCATTCGGCCTTA---C-CACATATATACAGGTTCACATTCATCACATTGGCCATTCGA
* * * *
92085294 CCTTATCTCATATATACACATTCGCATTCATCA
62 CCTTATCACACATACACACATTCACATTCATCA
92085327 CAT
1 CAT
92085330 AAAATCTTAA
Statistics
Matches: 85, Mismatches: 12, Indels: 4
0.84 0.12 0.04
Matches are distributed among these distances:
94 18 0.21
97 1 0.01
98 66 0.78
ACGTcount: A:0.27, C:0.30, G:0.10, T:0.32
Consensus pattern (94 bp):
CATTAGCCATTCGGCCTTACCACATATATACAGGTTCACATTCATCACATTGGCCATTCGACCTT
ATCACACATACACACATTCACATTCATCA
Found at i:92085330 original size:25 final size:25
Alignment explanation
Indices: 92085256--92085330 Score: 59
Period size: 25 Copynumber: 3.1 Consensus size: 25
92085246 TATCCCGCAT
** *
92085256 ATATATACAGGTTCACATTCATCAC
1 ATATATACACATTCGCATTCATCAC
* * *
92085281 AT-T-TGC-CATTCGGCCTT-ATCTC
1 ATATATACACATTC-GCATTCATCAC
92085303 ATATATACACATTCGCATTCATCAC
1 ATATATACACATTCGCATTCATCAC
92085328 ATA
1 ATA
92085331 AAATCTTAAA
Statistics
Matches: 36, Mismatches: 9, Indels: 10
0.65 0.16 0.18
Matches are distributed among these distances:
22 9 0.25
23 6 0.17
24 7 0.19
25 14 0.39
ACGTcount: A:0.31, C:0.27, G:0.08, T:0.35
Consensus pattern (25 bp):
ATATATACACATTCGCATTCATCAC
Found at i:92089028 original size:28 final size:27
Alignment explanation
Indices: 92088997--92089090 Score: 107
Period size: 28 Copynumber: 3.3 Consensus size: 27
92088987 CTGATTGATT
92088997 TCGCACACATAGCGCTCGATTATAGAAC
1 TCGCACACATAGCGCTCGATTA-AGAAC
* * **
92089025 TCGCACACATAGTGCCTCAATTACCAATC
1 TCGCACACATAGCG-CTCGATTAAGAA-C
92089054 TCGCACACATAGCGCTCGATTGAAGAAC
1 TCGCACACATAGCGCTCGATT-AAGAAC
*
92089082 TTGCACACA
1 TCGCACACA
92089091 CAGTGCCTCA
Statistics
Matches: 54, Mismatches: 9, Indels: 6
0.78 0.13 0.09
Matches are distributed among these distances:
28 30 0.56
29 24 0.44
ACGTcount: A:0.32, C:0.31, G:0.16, T:0.21
Consensus pattern (27 bp):
TCGCACACATAGCGCTCGATTAAGAAC
Found at i:92089172 original size:40 final size:40
Alignment explanation
Indices: 92089110--92089296 Score: 297
Period size: 40 Copynumber: 4.7 Consensus size: 40
92089100 ATAATTCCAA
* * * *
92089110 CACGAATGC-CTTCGAGG-TTTAGCCCGGATATATCACTAG
1 CACGAATGCTCTTCG-GGACTTAGCCCGGACATAACACCAG
92089149 CACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAG
*
92089189 CACGAATGCTCTTCGGGACTTAGCCCGGACGTAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAG
92089229 CACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAG
1 CACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAG
*
92089269 CACGAATGCTATTCGGGACTTAGCCCGG
1 CACGAATGCTCTTCGGGACTTAGCCCGG
92089297 CTATATAACT
Statistics
Matches: 139, Mismatches: 7, Indels: 3
0.93 0.05 0.02
Matches are distributed among these distances:
39 11 0.08
40 128 0.92
ACGTcount: A:0.26, C:0.30, G:0.24, T:0.20
Consensus pattern (40 bp):
CACGAATGCTCTTCGGGACTTAGCCCGGACATAACACCAG
Found at i:92090628 original size:37 final size:37
Alignment explanation
Indices: 92090575--92090677 Score: 179
Period size: 37 Copynumber: 2.8 Consensus size: 37
92090565 CGAATAGTCC
*
92090575 CCACAGGTAGTTATCGGGTCTTACCCGGACAAAATCT
1 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
* *
92090612 CCACACGTAGTCATCGGGTCTTACCCGGACATAATCT
1 CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
92090649 CCACACGTAGTTATCGGGTCTTACCCGGA
1 CCACACGTAGTTATCGGGTCTTACCCGGA
92090678 ATATATTTCC
Statistics
Matches: 62, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.24, C:0.30, G:0.21, T:0.24
Consensus pattern (37 bp):
CCACACGTAGTTATCGGGTCTTACCCGGACAAAATCT
Found at i:92090904 original size:48 final size:48
Alignment explanation
Indices: 92090847--92091254 Score: 699
Period size: 48 Copynumber: 8.5 Consensus size: 48
92090837 CTAGCCGAAT
**
92090847 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTTG
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
92090895 CATTAGCCATTCGGCTTTACCACCTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
92090943 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
92090991 CACTAGCCATTCGGCTTTACCACGTATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* * *
92091039 CACTATCCATTCGGCTTTACCACGTATACATATCTCATACTTATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
* *
92091087 CATTAGCCATTCAGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
92091135 CATTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
92091183 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
1 CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
*
92091231 CATTAGCCATTCGGCTTTACCACA
1 CACTAGCCATTCGGCTTTACCACA
92091255 CACATATATA
Statistics
Matches: 344, Mismatches: 16, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
48 344 1.00
ACGTcount: A:0.30, C:0.29, G:0.07, T:0.35
Consensus pattern (48 bp):
CACTAGCCATTCGGCTTTACCACATATACATATCTCATACATATTTCA
Found at i:92092445 original size:20 final size:22
Alignment explanation
Indices: 92092398--92092448 Score: 70
Period size: 20 Copynumber: 2.4 Consensus size: 22
92092388 TAATTTAAGG
92092398 AAAATAATATATATAATAAGTA
1 AAAATAATATATATAATAAGTA
* *
92092420 ATAATAATA-ATAT-ATAATTA
1 AAAATAATATATATAATAAGTA
92092440 AAAATAATA
1 AAAATAATA
92092449 CTCATAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
20 14 0.54
21 4 0.15
22 8 0.31
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATAATATATATAATAAGTA
Found at i:92092445 original size:23 final size:22
Alignment explanation
Indices: 92092400--92092448 Score: 64
Period size: 23 Copynumber: 2.2 Consensus size: 22
92092390 ATTTAAGGAA
*
92092400 AATAATATATATAATAAGTAAT
1 AATAATATATATAATAAGAAAT
92092422 AATAATAATATATAATTAA-AAAT
1 AATAAT-ATATATAA-TAAGAAAT
92092445 AATA
1 AATA
92092449 CTCATAATAA
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
22 6 0.25
23 15 0.62
24 3 0.12
ACGTcount: A:0.63, C:0.00, G:0.02, T:0.35
Consensus pattern (22 bp):
AATAATATATATAATAAGAAAT
Found at i:92092526 original size:17 final size:17
Alignment explanation
Indices: 92092504--92092538 Score: 52
Period size: 17 Copynumber: 2.1 Consensus size: 17
92092494 AAAATAAACA
*
92092504 AATAATACAATATATAT
1 AATAATACAATAAATAT
*
92092521 AATAATATAATAAATAT
1 AATAATACAATAAATAT
92092538 A
1 A
92092539 GGACTAAATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.63, C:0.03, G:0.00, T:0.34
Consensus pattern (17 bp):
AATAATACAATAAATAT
Found at i:92094047 original size:235 final size:235
Alignment explanation
Indices: 92093636--92094105 Score: 904
Period size: 235 Copynumber: 2.0 Consensus size: 235
92093626 GATTTCTTGT
92093636 CTATGGTATCTTTGACTGATATGCTGAGATTCTTTTAGTTTCCTTTTCTTGCTCTTCGTATCTAC
1 CTATGGTATCTTTGACTGATATGCTGAGATTCTTTTAGTTTCCTTTTCTTGCTCTTCGTATCTAC
*
92093701 TGTGTTTCCTTTTCTTGCAGGTATCCCAACGATCTCGGCGTTAACGGTGGTGCCAAGGCTAGAAG
66 TGTGTTTCCTTTTCTTGCAGGTATCCCAACGATCTCGGCATTAACGGTGGTGCCAAGGCTAGAAG
*
92093766 GGAGGCCTGAGATCGCGGTGCTTGGACGGTCACGAGAGGGACGGACGCATTGATGGCGCGTCAGT
131 GGAGGCCTGAGATCGCGGTGCTTGGACGGTCACGAGAGGGACGGACGCAATGATGGCGCGTCAGT
*
92093831 ATGCATTGATGGCCTCAATCTGGGGAGTTGTACCGACACC
196 ATACATTGATGGCCTCAATCTGGGGAGTTGTACCGACACC
*
92093871 CTATGGTATCTTTGACTGATATGCTGAGATTCTTTTAGTTTCCTTTTCTTGCTCTTCGTATCTGC
1 CTATGGTATCTTTGACTGATATGCTGAGATTCTTTTAGTTTCCTTTTCTTGCTCTTCGTATCTAC
92093936 TGTGTTTCCTTTTCTTGCAGGTATCCCAACGATCTCGGCATTAACGGTGGTGCCAAGGCTAGAAG
66 TGTGTTTCCTTTTCTTGCAGGTATCCCAACGATCTCGGCATTAACGGTGGTGCCAAGGCTAGAAG
92094001 GGAGGCCTGAGATCGCGGTGCTTGGACGGTCACGAGAGGGACGGACGCAATGATGGCGCGTCAGT
131 GGAGGCCTGAGATCGCGGTGCTTGGACGGTCACGAGAGGGACGGACGCAATGATGGCGCGTCAGT
92094066 ATACATTGATGGCCTCAATCTGGGGAGTTGTACCGACACC
196 ATACATTGATGGCCTCAATCTGGGGAGTTGTACCGACACC
92094106 ACCGAAGCTT
Statistics
Matches: 231, Mismatches: 4, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
235 231 1.00
ACGTcount: A:0.19, C:0.22, G:0.28, T:0.31
Consensus pattern (235 bp):
CTATGGTATCTTTGACTGATATGCTGAGATTCTTTTAGTTTCCTTTTCTTGCTCTTCGTATCTAC
TGTGTTTCCTTTTCTTGCAGGTATCCCAACGATCTCGGCATTAACGGTGGTGCCAAGGCTAGAAG
GGAGGCCTGAGATCGCGGTGCTTGGACGGTCACGAGAGGGACGGACGCAATGATGGCGCGTCAGT
ATACATTGATGGCCTCAATCTGGGGAGTTGTACCGACACC
Found at i:92094434 original size:68 final size:68
Alignment explanation
Indices: 92094360--92094489 Score: 260
Period size: 68 Copynumber: 1.9 Consensus size: 68
92094350 AACAAATAAA
92094360 CATTTATTTATTTTAATTTTGGTTTTGGATTCCAAGGCCCGGTCAAATTTGGGTTATTACAGTCC
1 CATTTATTTATTTTAATTTTGGTTTTGGATTCCAAGGCCCGGTCAAATTTGGGTTATTACAGTCC
92094425 TAT
66 TAT
92094428 CATTTATTTATTTTAATTTTGGTTTTGGATTCCAAGGCCCGGTCAAATTTGGGTTATTACAG
1 CATTTATTTATTTTAATTTTGGTTTTGGATTCCAAGGCCCGGTCAAATTTGGGTTATTACAG
92094490 CTGCCCCTCT
Statistics
Matches: 62, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.22, C:0.14, G:0.18, T:0.45
Consensus pattern (68 bp):
CATTTATTTATTTTAATTTTGGTTTTGGATTCCAAGGCCCGGTCAAATTTGGGTTATTACAGTCC
TAT
Found at i:92094846 original size:81 final size:82
Alignment explanation
Indices: 92094711--92094948 Score: 363
Period size: 81 Copynumber: 2.9 Consensus size: 82
92094701 CAAATCATCT
* *
92094711 TGAGTCTGC-TTGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTCCTTGTAGGCA
1 TGAGTCT-CTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCA
*
92094775 CAAGGATGCCAAACCA-A
65 CAAGGATACCAAACCACA
92094792 TGAGTCTCTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
1 TGAGTCTCTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
*
92094857 AAGGATACCAAACCATCT
66 AAGGATACCAAACCA-CA
* * * *
92094875 TGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTTGTAAACAC
1 TGAGTCTCTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
*
92094940 AAGAATACC
66 AAGGATACC
92094949 GAATCATCTT
Statistics
Matches: 145, Mismatches: 9, Indels: 4
0.92 0.06 0.03
Matches are distributed among these distances:
80 1 0.01
81 75 0.52
83 69 0.48
ACGTcount: A:0.28, C:0.20, G:0.19, T:0.32
Consensus pattern (82 bp):
TGAGTCTCTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCCTTGTAAGCAC
AAGGATACCAAACCACA
Found at i:92094918 original size:83 final size:83
Alignment explanation
Indices: 92094701--92094959 Score: 378
Period size: 83 Copynumber: 3.1 Consensus size: 83
92094691 GTAAGGATGT
* ** *
92094701 CAAATCATCTTGAGTCTGCTTGAGAACATTTGAGAGTCATATCTGCAATGTTCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
* *
92094766 TTGTAGGCACAAGGATGC
66 TTGTAAGCACAAGGATAC
* *
92094784 CAAACCA--ATGAGTCTCTTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
1 CAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
92094847 TTGTAAGCACAAGGATAC
66 TTGTAAGCACAAGGATAC
* *
92094865 CAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTC
1 CAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
* *
92094930 TTGTAAACACAAGAATAC
66 TTGTAAGCACAAGGATAC
* *
92094948 CGAATCATCTTG
1 CAAACCATCTTG
92094960 GATCTGCTTC
Statistics
Matches: 159, Mismatches: 15, Indels: 4
0.89 0.08 0.02
Matches are distributed among these distances:
81 75 0.47
83 84 0.53
ACGTcount: A:0.29, C:0.20, G:0.19, T:0.32
Consensus pattern (83 bp):
CAAACCATCTTGAGTCTATTTGAGAACATTTGAGAGTCATATCTGCAATGTCCTCGATTTGTTCC
TTGTAAGCACAAGGATAC
Found at i:92095096 original size:119 final size:119
Alignment explanation
Indices: 92094881--92095197 Score: 474
Period size: 119 Copynumber: 2.7 Consensus size: 119
92094871 ATCTTGAGTC
* * * * * * * *
92094881 TATTTGAGAACATTTGAGAGTCATATCTGCAACGTCCTCGATTTGTTTCTTGTAAACACAAGAAT
1 TATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
* *
92094946 ACCGAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGGT-TAGATCTGCTA
66 GCCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAA-GTCTAGATCTGCTA
*
92095000 TATTTGAGAACGTCTGAGAGTCAAATCTACTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 TATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
* *
92095065 GCCAAATCATCTTGGATCTGCTTCAGTATAAACATCTGAAGTCTAGATCTGCTG
66 GCCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGTCTAGATCTGCTA
* * *
92095119 TCTTTGAGAACGTCTAAGAGTCAAATCTGCTATTTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
1 TATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
92095184 GCCAAATCATCTTG
66 GCCAAATCATCTTG
92095198 AGTCTGTTTT
Statistics
Matches: 180, Mismatches: 17, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
118 2 0.01
119 178 0.99
ACGTcount: A:0.28, C:0.20, G:0.18, T:0.33
Consensus pattern (119 bp):
TATTTGAGAACGTCTGAGAGTCAAATCTGCTATGTCCTCGATTTGTTCCTTGTAAGCACAAGGAT
GCCAAATCATCTTGGATCTGCTTCAGCATAAACATCTGAAGTCTAGATCTGCTA
Found at i:92095263 original size:84 final size:85
Alignment explanation
Indices: 92095116--92095281 Score: 226
Period size: 84 Copynumber: 2.0 Consensus size: 85
92095106 TCTAGATCTG
* * ** * *
92095116 CTGTCTTTGAGAACGTCTAAGAGTCAAATCTGCTATTTCCTCGATTTGTTCCTTGTAAGCACAAG
1 CTGTCTTTGAGAACATCTAAGAGTCAAATCTGCAACGTCCTCGATTTATTCCTTGTAAACACAAG
* *
92095181 GATGCCAAATCATCTTGAGT
66 AATACCAAATCATCTTGAGT
* * *
92095201 CTGT-TTTGAGAACATCTGAGAGTCATATCTGCAACGTCCTCGATTTATTTCTTGTAAACACAAG
1 CTGTCTTTGAGAACATCTAAGAGTCAAATCTGCAACGTCCTCGATTTATTCCTTGTAAACACAAG
92095265 AATACCAAATCATCTTG
66 AATACCAAATCATCTTG
92095282 GATCTGCTTT
Statistics
Matches: 70, Mismatches: 11, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
84 66 0.94
85 4 0.06
ACGTcount: A:0.28, C:0.21, G:0.17, T:0.34
Consensus pattern (85 bp):
CTGTCTTTGAGAACATCTAAGAGTCAAATCTGCAACGTCCTCGATTTATTCCTTGTAAACACAAG
AATACCAAATCATCTTGAGT
Found at i:92106550 original size:128 final size:128
Alignment explanation
Indices: 92106322--92106578 Score: 505
Period size: 128 Copynumber: 2.0 Consensus size: 128
92106312 TCCTCTTTGA
*
92106322 AATATTTGAAAACTTGGGTTTACTTATATCAAAGTATTGGCTTTAAGTTAGCCTTTTAGAAATCC
1 AATATTTGAAAACTTGGGTTTACTTATATCAAAGTATTGGCTTTAAGTTAGCCTTTTAGAAACCC
92106387 CTATCTCGAAACAACAAAATGCTATATCCAGTAAGTTAGGACATATCACTTTGCAGTTCCAAG
66 CTATCTCGAAACAACAAAATGCTATATCCAGTAAGTTAGGACATATCACTTTGCAGTTCCAAG
92106450 AATATTTGAAAACTTGGGTTTACTTATATCAAAGTATTGGCTTTAAGTTAGCCTTTTAGAAACCC
1 AATATTTGAAAACTTGGGTTTACTTATATCAAAGTATTGGCTTTAAGTTAGCCTTTTAGAAACCC
92106515 CTATCTCGAAACAACAAAATGCTATATCCAGTAAGTTAGGACATATCACTTTGCAGTTCCAAG
66 CTATCTCGAAACAACAAAATGCTATATCCAGTAAGTTAGGACATATCACTTTGCAGTTCCAAG
92106578 A
1 A
92106579 CAGTCACTTA
Statistics
Matches: 128, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
128 128 1.00
ACGTcount: A:0.35, C:0.18, G:0.15, T:0.33
Consensus pattern (128 bp):
AATATTTGAAAACTTGGGTTTACTTATATCAAAGTATTGGCTTTAAGTTAGCCTTTTAGAAACCC
CTATCTCGAAACAACAAAATGCTATATCCAGTAAGTTAGGACATATCACTTTGCAGTTCCAAG
Done.