Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 275 of 297
Found at i:93811662 original size:40 final size:39
Alignment explanation
Indices: 93811582--93811802 Score: 230
Period size: 40 Copynumber: 5.5 Consensus size: 39
93811572 ATGATGTCCA
* * * *
93811582 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * * *
93811622 GACTAAGATCCGAAGGCATTTGTACGAGATACTAATTCCG
1 GGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* * *
93811662 GGCTAAGCCCGAAGGCATTGGTGCAAGTTACTAAATCCG
1 GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCG
* *
93811701 GGTTAAGTCCTGAAGGCATTTGTGTGAGTTACTAAATCCG
1 GGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTAAATCCG
*
93811741 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AATCCG
*
93811781 GGCTATGTCCTGAAGGCATTTG
1 GGCTAAGTCC-GAAGGCATTTG
93811803 AACGAGGAGC
Statistics
Matches: 152, Mismatches: 23, Indels: 12
0.81 0.12 0.06
Matches are distributed among these distances:
39 36 0.24
40 105 0.69
41 11 0.07
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.27
Consensus pattern (39 bp):
GGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:93811782 original size:80 final size:80
Alignment explanation
Indices: 93811582--93811808 Score: 273
Period size: 80 Copynumber: 2.9 Consensus size: 80
93811572 ATGATGTCCA
* * * *
93811582 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCC-GAAGGCATTTGT
1 GGCTAAGTCCCGAAGGCATTTGTGC-AAGTTACTATAACCGGGCTAAG-TCCTGAAGGCATTTGT
*
93811645 ACGAGATACTAATTCCG
64 ACGAGATACTAAATCCG
* * *
93811662 GGCTAAG-CCCGAAGGCATTGGTGCAAGTTACTA-AATCCGGGTTAAGTCCTGAAGGCATTTGTG
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAA-CCGGGCTAAGTCCTGAAGGCATTTGTA
* *
93811725 TGAGTTACTAAATCCG
65 CGAGATACTAAATCCG
* * * *
93811741 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAACCGGGCTATGTCCTGAAGGCATTTGAAC
1 GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCTGAAGGCATTTGTAC
93811806 GAG
66 GAG
93811809 GAGCTATATC
Statistics
Matches: 124, Mismatches: 18, Indels: 10
0.82 0.12 0.07
Matches are distributed among these distances:
78 4 0.03
79 55 0.44
80 63 0.51
81 2 0.02
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
GGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAACCGGGCTAAGTCCTGAAGGCATTTGTAC
GAGATACTAAATCCG
Found at i:93828187 original size:42 final size:42
Alignment explanation
Indices: 93828113--93828192 Score: 99
Period size: 42 Copynumber: 1.9 Consensus size: 42
93828103 TATCTTGGAT
* * *
93828113 ATGGTCTTACATGAAATATCATATCGACACCATGTCCCTGAC
1 ATGGTCTTACACGAAATATCATACCGACACCATATCCCTGAC
* *
93828155 ATGGTCTTATACGAAATCA-CATACCGATACCATATCCC
1 ATGGTCTTACACGAAAT-ATCATACCGACACCATATCCC
93828193 AAATATTGCC
Statistics
Matches: 32, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
42 31 0.97
43 1 0.03
ACGTcount: A:0.33, C:0.28, G:0.12, T:0.28
Consensus pattern (42 bp):
ATGGTCTTACACGAAATATCATACCGACACCATATCCCTGAC
Found at i:93831886 original size:48 final size:48
Alignment explanation
Indices: 93831811--93832101 Score: 416
Period size: 48 Copynumber: 6.2 Consensus size: 48
93831801 TCTCATATCG
* **
93831811 ATGCCATGTCCCAGACATGGTCCTACATGAAATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
93831859 ATGCCATATCTCAGATATGGTCTTACATGGGTTCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
93831907 ATGCCATGTCCTAGACATGGTC-TAGCATGGGAT--CA-A---ATGCCA
1 ATGCCATGTCCCAGACATGGTCTTA-CATGGGATCACATATCGATGCCA
*
93831949 ATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
*
93831997 ATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* *
93832045 ATGCCATGTCCCAGATATGGTCTTACATGGGATCACATATCGATTCCA
1 ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
93832093 ATGCCATGT
1 ATGCCATGT
93832102 GTAACACCCC
Statistics
Matches: 218, Mismatches: 17, Indels: 16
0.87 0.07 0.06
Matches are distributed among these distances:
42 34 0.16
43 2 0.01
44 2 0.01
45 2 0.01
46 2 0.01
47 2 0.01
48 174 0.80
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.26
Consensus pattern (48 bp):
ATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
Found at i:93832018 original size:138 final size:138
Alignment explanation
Indices: 93831811--93832079 Score: 423
Period size: 138 Copynumber: 1.9 Consensus size: 138
93831801 TCTCATATCG
* * *
93831811 ATGCCATGTCCCAGACATGGTCCTACATGAAATCACATATCGATGCCAATGCCATATCTCAGATA
1 ATGCCATGTCCCAGACATGGTCCTACACGAAATCACATATCGATGCCAATGCCATATCCCAGACA
* * *
93831876 TGGTCTTACATGGGTTCACATATCGATGCCAATGCCATGTCCTAGACATGGTC-TAGCATGGGAT
66 TGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTA-CATGGGAT
93831940 CAAATGCCA
130 CAAATGCCA
* ** *
93831949 ATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACA
1 ATGCCATGTCCCAGACATGGTCCTACACGAAATCACATATCGATGCCAATGCCATATCCCAGACA
*
93832014 TGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGATATGGTCTTACATGGGATC
66 TGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
93832079 A
131 A
93832080 CATATCGATT
Statistics
Matches: 119, Mismatches: 11, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
138 117 0.98
139 2 0.02
ACGTcount: A:0.28, C:0.26, G:0.20, T:0.25
Consensus pattern (138 bp):
ATGCCATGTCCCAGACATGGTCCTACACGAAATCACATATCGATGCCAATGCCATATCCCAGACA
TGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
AAATGCCA
Found at i:93833615 original size:39 final size:40
Alignment explanation
Indices: 93833490--93833621 Score: 196
Period size: 40 Copynumber: 3.3 Consensus size: 40
93833480 GCTACTCGTT
*
93833490 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
93833530 CAAATGCCTTCGGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
93833570 CCAATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
93833609 CAAATGCCTTCGG
1 CAAATGCCTTCGG
93833622 ATCCACCATC
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
39 34 0.41
40 47 0.57
41 2 0.02
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.23
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:93834062 original size:57 final size:57
Alignment explanation
Indices: 93833956--93834132 Score: 340
Period size: 56 Copynumber: 3.1 Consensus size: 57
93833946 TATTAGTTTA
93833956 TTGCCCATGCTTCTTATTTTATTC-TTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTTCCATTAACACAACATGTTTCATGACATGTT
93834012 TTGCCCATGCTTCTTATTTTATTCTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTTCCATTAACACAACATGTTTCATGACATGTT
93834069 TTGCCCATGCTTCTTATTTTATT-TTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTTCCATTAACACAACATGTTTCATGACATGTT
93834125 TTGCCCAT
1 TTGCCCAT
93834133 CATCCCTTGT
Statistics
Matches: 120, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
56 65 0.54
57 55 0.46
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (57 bp):
TTGCCCATGCTTCTTATTTTATTCTTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:93834484 original size:48 final size:48
Alignment explanation
Indices: 93834428--93834901 Score: 264
Period size: 48 Copynumber: 10.5 Consensus size: 48
93834418 GGCTGTCACA
*
93834428 CCATGTCCCAGACATGATCTTACACGGGATCACATATGGATGCCAATG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
* *
93834476 CCATGTCCCAGACAT-AGTCTAACATGGGATCACATATCGATGCCAATG
1 CCATGTCCCAGACATGA-TCTTACACGGGATCACATATCGATGCCAATG
* * * *
93834524 TCATGTCCCAGACATGGTCTTACA--TG-T--CAT-T--A---CGATG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
* ** *
93834561 CCATGTCCCAGACATGGTCTTACACGAAATCATATATCGATGCCAATG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
* * ** *
93834609 CCATATCCCAGGACAT-ATC--A-ATGCCAATGC-CAT-T---TCCCAA-G
1 CCATGTCCCA-GACATGATCTTACACG-GGAT-CACATATCGATGCCAATG
* * *** * *
93834650 -CATTGT--CATACTTG-GGAT-CA-----T---ATATCAATGTCAATG
1 CCA-TGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
* * * * * *
93834686 CCATGTCCTAGACATGGTTTTACACAGGATCACAAATCAATGCCAATG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
* * * * ** *
93834734 CAATTTCCCAGATATGGTCTTACATAGAATCACATATCGATGCCAATG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
* *
93834782 CCATGTCCCAGACATTATCTTACACGGGATCACATATCGACGCCAATG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
* *
93834830 CCATGTCCCAAACAT-AGTCTTACATGGGATCACATATCGATGCCAATG
1 CCATGTCCCAGACATGA-TCTTACACGGGATCACATATCGATGCCAATG
* *
93834878 CCATGTCCTAGACATGGTCTTACA
1 CCATGTCCCAGACATGATCTTACA
93834902 TGTCATTACG
Statistics
Matches: 327, Mismatches: 58, Indels: 82
0.70 0.12 0.18
Matches are distributed among these distances:
31 2 0.01
32 1 0.00
34 1 0.00
35 4 0.01
36 4 0.01
37 29 0.09
38 8 0.02
39 3 0.01
40 7 0.02
41 3 0.01
42 8 0.02
43 4 0.01
45 6 0.02
46 7 0.02
47 3 0.01
48 232 0.71
49 5 0.02
ACGTcount: A:0.30, C:0.27, G:0.17, T:0.26
Consensus pattern (48 bp):
CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATG
Found at i:93834895 original size:144 final size:144
Alignment explanation
Indices: 93834621--93835442 Score: 572
Period size: 144 Copynumber: 6.0 Consensus size: 144
93834611 ATATCCCAGG
* * * * * * * *
93834621 ACATATCAATGCCAATGCCATTTCCCA-AGCATTGTCATACTTGGGATCATATATCAATGTCAAT
1 ACATATCGATGCCAATGCCATGTCCCAGA-CATGGTCTTACATGGGATCACATATCGATGCCAAT
* * * * ** * * * * *
93834685 GCCATGTCCTAGACATGGTTTTACACAGGATCACAAATCAATGCCAATGCAATTTCCCAGATATG
65 GCCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATG
*
93834750 GTCTTACATAGAATC
130 GTCTTACACAGAATC
** * *
93834765 ACATATCGATGCCAATGCCATGTCCCAGACATTATCTTACACGGGATCACATATCGACGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
*
93834830 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTAGACATGG
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
*
93834895 TCTTACA-TG--TC
131 TCTTACACAGAATC
* * **** *
93834906 A-TTA-CGAT----A--CCATGTCCCAGGCATGGTCTTACACAAAATCATATATCGATGCC-A--
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * * * * * * ** * *
93834960 -CATATCCCAAGCATA-TC---GAT--G-CCA-ATA-CCATTTCCCAA--ACAT-TTTCATACTT
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGA--TGCCAATGCCATGTCCCAGACAT
** *
93835012 GG--GAACACA-TATC
129 GGTCTTACACAGAATC
* ** * * * *
93835025 -GATGCCAATGCC-AT-----GTCCCAGACATGGTCTTACATGGGATCACAAATCAATGCCAATT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * *
93835083 CCATGTCCCAAACA-ATGTCTTACATGGGATCACAAATTGATTCCAATGCCATGTCCCA-AGCAT
66 CCATGTCCCAAACATA-GTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGA-CAT
* *
93835146 GGTCCTACACGGAATC
129 GGTCTTACACAGAATC
* * * * *
93835162 ACATATTGATGCTAATGCCATGTCGCAAACATGGTCTAACATGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * * ** * *
93835227 CCATGCCCCAGACATGGTCTTACACAGGATCACATAACGATGCCAATGCCATGTCCCAGACATAG
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
* * *
93835292 TCTTATACGGGATC
131 TCTTACACAGAATC
* *
93835306 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* * * * ***
93835371 CCAAGTCCCAAACATGGTCTTACAAGGGACCACATATCGATGCCAATGCCATGTCTTGGACATGG
66 CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
93835436 TCTTACA
131 TCTTACA
93835443 TGTCATTACG
Statistics
Matches: 520, Mismatches: 116, Indels: 84
0.72 0.16 0.12
Matches are distributed among these distances:
117 3 0.01
119 10 0.02
120 40 0.08
121 4 0.01
122 7 0.01
123 3 0.01
124 11 0.02
125 4 0.01
128 4 0.01
129 13 0.03
130 1 0.00
131 7 0.01
132 3 0.01
133 41 0.08
134 7 0.01
135 1 0.00
136 4 0.01
137 3 0.01
138 6 0.01
139 6 0.01
140 2 0.00
141 3 0.01
143 1 0.00
144 334 0.64
145 2 0.00
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (144 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
CCATGTCCCAAACATAGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
TCTTACACAGAATC
Found at i:93834902 original size:48 final size:48
Alignment explanation
Indices: 93834621--93834903 Score: 316
Period size: 48 Copynumber: 5.9 Consensus size: 48
93834611 ATATCCCAGG
* * * *
93834621 ACATATCAATGCCAATGCCATTTCCCA-AGCATTGTCATACTTGGGATC
1 ACATATCAATGCCAATGCCATGTCCCAGA-CATGGTCTTACATGGGATC
* * * * **
93834669 ATATATCAATGTCAATGCCATGTCCTAGACATGGTTTTACACAGGATC
1 ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * *
93834717 ACAAATCAATGCCAATGCAATTTCCCAGATATGGTCTTACATAGAATC
1 ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* ** *
93834765 ACATATCGATGCCAATGCCATGTCCCAGACATTATCTTACACGGGATC
1 ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93834813 ACATATCGACGCCAATGCCATGTCCCAAACATAGTCTTACATGGGATC
1 ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
93834861 ACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATG
93834904 TCATTACGAT
Statistics
Matches: 195, Mismatches: 39, Indels: 2
0.83 0.17 0.01
Matches are distributed among these distances:
48 194 0.99
49 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.16, T:0.27
Consensus pattern (48 bp):
ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:93835044 original size:48 final size:48
Alignment explanation
Indices: 93834971--93835444 Score: 581
Period size: 48 Copynumber: 9.9 Consensus size: 48
93834961 ATATCCCAAG
* * ** * * *
93834971 CATATCGATGCCAATACCATTTCCCAAACATTTTCATACTTGGGAACA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
*
93835019 CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * *
93835067 CAAATCAATGCCAATTCCATGTCCCAAACAAT-GTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAAC-ATGGTCTTACATGGGATCA
* * * * * * *
93835115 CAAATTGATTCCAATGCCATGTCCCAAGCATGGTCCTACACGGAATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * * *
93835163 CATATTGATGCTAATGCCATGTCGCAAACATGGTCTAACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * **
93835211 CATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACACAGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * * * *
93835259 CATAACGATGCCAATGCCATGTCCCAGACATAGTCTTATACGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
93835307 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
* * * *
93835355 CATATCGATGCCAATTCCAAGTCCCAAACATGGTCTTACAAGGGACCA
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
****
93835403 CATATCGATGCCAATGCCATGTCTTGGACATGGTCTTACATG
1 CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATG
93835445 TCATTACGAT
Statistics
Matches: 366, Mismatches: 58, Indels: 4
0.86 0.14 0.01
Matches are distributed among these distances:
47 2 0.01
48 362 0.99
49 2 0.01
ACGTcount: A:0.31, C:0.27, G:0.18, T:0.25
Consensus pattern (48 bp):
CATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCA
Found at i:93835193 original size:349 final size:352
Alignment explanation
Indices: 93834428--93835250 Score: 1206
Period size: 349 Copynumber: 2.3 Consensus size: 352
93834418 GGCTGTCACA
* *
93834428 CCATGTCCCAGACATGATCTTACACGGGATCACATATGGATGCCAATGCCATGTCCCAGACATAG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATAG
*
93834493 TCTAACATGGGATCACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACATGTCATTACG
66 TCTAACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGTCATTACG
* * *
93834558 ATGCCATGTCCCAGACATGGTCTTACACGAAATCATATATCGATGCCAATGCCATATCCCAGGAC
131 ATACCATGTCCCAGACATGGTCTTACACAAAATCATATATCGATGCCAA--CCATATCCCAAGAC
* * * * *
93834623 ATATCAATGCCAATGCCATTTCCCAAGCATTGTCATACTTGGGATCATATATCAATGTCAATGCC
194 ATATCAATGCCAATACCATTTCCCAAACATTGTCATACTTGGGAACACATATCAATGCCAATGCC
* * * * *
93834688 ATGTCCTAGACATGGTTTTACACAGGATCACAAATCAATGCCAATGCAATTTCCCAGATATGGTC
259 ATGTCCCAGACATGGTCTTACACAGGATCACAAATCAATGCCAATGCAATGTCCCAAAAATGGTC
*
93834753 TTACATAGAATCACATATCGATGCCAATG
324 TTACATAGAATCACAAATCGATGCCAATG
* *
93834782 CCATGTCCCAGACATTATCTTACACGGGATCACATATCGACGCCAATGCCATGTCCCAAACATAG
1 CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATAG
* *
93834847 TCTTACATGGGATCACATATCGATGCCAATGCCATGTCCTAGACATGGTCTTACATGTCATTACG
66 TCTAACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGTCATTACG
*
93834912 ATACCATGTCCCAGGCATGGTCTTACACAAAATCATATATCGATGCC-A-CATATCCCAAG-CAT
131 ATACCATGTCCCAGACATGGTCTTACACAAAATCATATATCGATGCCAACCATATCCCAAGACAT
* * *
93834974 ATCGATGCCAATACCATTTCCCAAACATTTTCATACTTGGGAACACATATCGATGCCAATGCCAT
196 ATCAATGCCAATACCATTTCCCAAACATTGTCATACTTGGGAACACATATCAATGCCAATGCCAT
** * *
93835039 GTCCCAGACATGGTCTTACATGGGATCACAAATCAATGCCAATTCCATGTCCCAAACAAT-GTCT
261 GTCCCAGACATGGTCTTACACAGGATCACAAATCAATGCCAATGCAATGTCCCAAA-AATGGTCT
* * * *
93835103 TACATGGGATCACAAATTGATTCCAATG
325 TACATAGAATCACAAATCGATGCCAATG
* * * * * * *
93835131 CCATGTCCCA-AGCATGGTCCTACACGGAATCACATATTGATGCTAATGCCATGTCGCAAACATG
1 CCATGTCCCAGA-CATGATCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATA
*
93835195 GTCTAACATGGGATCACATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACA
65 GTCTAACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACA
93835251 CAGGATCACA
Statistics
Matches: 422, Mismatches: 45, Indels: 9
0.89 0.09 0.02
Matches are distributed among these distances:
348 1 0.00
349 241 0.57
350 12 0.03
353 1 0.00
354 167 0.40
ACGTcount: A:0.31, C:0.27, G:0.17, T:0.26
Consensus pattern (352 bp):
CCATGTCCCAGACATGATCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAAACATAG
TCTAACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGTCATTACG
ATACCATGTCCCAGACATGGTCTTACACAAAATCATATATCGATGCCAACCATATCCCAAGACAT
ATCAATGCCAATACCATTTCCCAAACATTGTCATACTTGGGAACACATATCAATGCCAATGCCAT
GTCCCAGACATGGTCTTACACAGGATCACAAATCAATGCCAATGCAATGTCCCAAAAATGGTCTT
ACATAGAATCACAAATCGATGCCAATG
Found at i:93835596 original size:48 final size:47
Alignment explanation
Indices: 93835516--93835846 Score: 304
Period size: 48 Copynumber: 6.9 Consensus size: 47
93835506 ATATCACAGA
* * * *
93835516 ACATATCGATGCCATTGCTATTTCCCAGACATGGTTTTACATGGGATC
1 ACATATCAATGCCAATGCCATGT-CCAGACATGGTTTTACATGGGATC
* * *
93835564 ACATATCAATGCCAATGACATGTCTCAAACATGGTCTTACATGGGATC
1 ACATATCAATGCCAATGCCATGTC-CAGACATGGTTTTACATGGGATC
* * * * * * *
93835612 ACAAATCGATTCAAATCCCATCTCCCAGACATGGTTTTATATGGGATC
1 ACATATCAATGCCAATGCCATGT-CCAGACATGGTTTTACATGGGATC
* * * *
93835660 ACATATCAATGCCAATGACATGTCTCAAACATGGTCTTACGTGGGATC
1 ACATATCAATGCCAATGCCATGTC-CAGACATGGTTTTACATGGGATC
* * * * *
93835708 ACAAATCGATTCAAATGCCATCTCCCAGACATGGTCTTT-CATGGGATC
1 ACATATCAATGCCAATGCCATGT-CCAGACATGGT-TTTACATGGGATC
* * * * * *
93835756 ACATATCAATGCTAATGCCATATCCTTGACATGGTCTTACAAGGGATA
1 ACATATCAATGCCAATGCCATGTCC-AGACATGGTTTTACATGGGATC
* *
93835804 ACATATCGATTCCAATGCCATGTCCTAGACATGGTTTTACATG
1 ACATATCAATGCCAATGCCATGTCC-AGACATGGTTTTACATG
93835847 TCATTACGTT
Statistics
Matches: 223, Mismatches: 53, Indels: 14
0.77 0.18 0.05
Matches are distributed among these distances:
47 6 0.03
48 213 0.96
49 4 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (47 bp):
ACATATCAATGCCAATGCCATGTCCAGACATGGTTTTACATGGGATC
Found at i:93835684 original size:96 final size:96
Alignment explanation
Indices: 93835538--93835846 Score: 460
Period size: 96 Copynumber: 3.2 Consensus size: 96
93835528 CATTGCTATT
93835538 TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
1 TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
*
93835603 CATGGGATCACAAATCGATTCAAATCCCATC
66 CATGGGATCACAAATCGATTCAAATGCCATC
*
93835634 TCCCAGACATGGTTTTATATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
1 TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
*
93835699 CGTGGGATCACAAATCGATTCAAATGCCATC
66 CATGGGATCACAAATCGATTCAAATGCCATC
* * * **
93835730 TCCCAGACATGGTCTTT-CATGGGATCACATATCAATGCTAATGCCATATC-CTTGACATGGTCT
1 TCCCAGACATGGT-TTTACATGGGATCACATATCAATGCCAATGACATGTCTC-AAACATGGTCT
* * * * *
93835793 TACAAGGGATAACATATCGATTCCAATGCCATG
64 TACATGGGATCACAAATCGATTCAAATGCCATC
*
93835826 TCCTAGACATGGTTTTACATG
1 TCCCAGACATGGTTTTACATG
93835847 TCATTACGTT
Statistics
Matches: 194, Mismatches: 16, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
95 4 0.02
96 187 0.96
97 3 0.02
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (96 bp):
TCCCAGACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTA
CATGGGATCACAAATCGATTCAAATGCCATC
Found at i:93835787 original size:144 final size:144
Alignment explanation
Indices: 93835544--93835846 Score: 338
Period size: 144 Copynumber: 2.1 Consensus size: 144
93835534 TATTTCCCAG
* * * * *
93835544 ACATGGTTTTACATGGGATCACATATCAATGCCAATGACATGTCTCAAACATGGTCTTACATGGG
1 ACATGGTCTTACATGGGATCACAAATCAATGCAAATGACATCTCCCAAACATGGTCTTACATGGG
* * * * * * *
93835609 ATCACAAATCGATTCAAATCCCATCTCCCAGACATGGTTTTATATGGGATCACATATCAATGCCA
66 ATCACAAATCAATGCAAATCCCATATCCCAGACATGGTCTTACAAGGGATAACATATCAATGCCA
93835674 ATGACATGTCTCAA
131 ATGACATGTCTCAA
* * * * * *
93835688 ACATGGTCTTACGTGGGATCACAAATCGATTCAAATGCCATCTCCCAGACATGGTCTTTCATGGG
1 ACATGGTCTTACATGGGATCACAAATCAATGCAAATGACATCTCCCAAACATGGTCTTACATGGG
* * * ** * *
93835753 ATCACATATCAATGCTAATGCCATATCCTTGACATGGTCTTACAAGGGATAACATATCGATTCCA
66 ATCACAAATCAATGCAAATCCCATATCCCAGACATGGTCTTACAAGGGATAACATATCAATGCCA
* *
93835818 ATGCCATGTC-CTAG
131 ATGACATGTCTC-AA
*
93835832 ACATGGTTTTACATG
1 ACATGGTCTTACATG
93835847 TCATTACGTT
Statistics
Matches: 129, Mismatches: 29, Indels: 2
0.81 0.18 0.01
Matches are distributed among these distances:
143 1 0.01
144 128 0.99
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (144 bp):
ACATGGTCTTACATGGGATCACAAATCAATGCAAATGACATCTCCCAAACATGGTCTTACATGGG
ATCACAAATCAATGCAAATCCCATATCCCAGACATGGTCTTACAAGGGATAACATATCAATGCCA
ATGACATGTCTCAA
Found at i:93835974 original size:48 final size:47
Alignment explanation
Indices: 93835920--93836418 Score: 516
Period size: 48 Copynumber: 10.4 Consensus size: 47
93835910 ATCCTAGAGT
* * * *
93835920 ATATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGGA-CAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-T-GGGATCAC
* * *
93835968 ATATCGATGTCAATCCCATGTCCCAGACATGGTCTTACATGGAATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCAC
* * * * * *
93836016 AAATCAATGCCAATTCCATGCCCCAAACACGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCAC
* * * * *
93836064 AAATTGATGCCAATGCCATGTCCCGGACATGGTCTTACACGGAATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCAC
* *
93836112 ATATTGATGCCAATGCCATGTCGCAGACATGGTCTAATA-TGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCT--TACTGGGATCAC
* * * **
93836160 ATATCGATGCCAATGCTATGTCCCACATATGGTCTTACACAGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCAC
*
93836208 ATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACT-GGGATCAC
* * *
93836256 ATATCGATGTCAATGTCATGTCCTAGACATGGTCTTACATGGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCAC
* * **
93836304 ATATCGATGCCAATTCCATATCCCAGACATGGTCTTACAAAGGATCAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCAC
* * * ** *
93836352 ATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAAC
1 ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCAC
*
93836400 ATATCGATGCTAATGCCAT
1 ATATCGATGCCAATGCCAT
93836419 ATCTCAGAAC
Statistics
Matches: 379, Mismatches: 65, Indels: 14
0.83 0.14 0.03
Matches are distributed among these distances:
46 2 0.01
47 3 0.01
48 371 0.98
49 1 0.00
50 2 0.01
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (47 bp):
ATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACTGGGATCAC
Found at i:93836093 original size:96 final size:96
Alignment explanation
Indices: 93835922--93837292 Score: 581
Period size: 96 Copynumber: 14.4 Consensus size: 96
93835912 CCTAGAGTAT
* * * * * * * *
93835922 ATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGGA-CACATATCGATGTCAATCCCA
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGATCACAAATCGATGCCAATGCCA
93835986 TGTCCCAGACATGGTCTTACATGGAATCACAA
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * *
93836018 ATCAATGCCAATTCCATGCCCCAAACACGGTCTTACATGGGATCACAAATTGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
* * *
93836083 GTCCCGGACATGGTCTTACACGGAATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * *
93836114 ATTGATGCCAATGCCATGTCGCAGACATGGTCTAATATGGGATCACATATCGATGCCAATGCTAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
* * *
93836179 GTCCCACATATGGTCTTACACAGG-ATCACATA
66 GTCCCAGACATGGTCTTACA-TGGAATCACA-A
* * *
93836211 A-CGATGCCAATGCCATGTCCCAGACATGGTCTTAC-TCGGGATCACATATCGATGTCAATGTCA
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-GGGATCACAAATCGATGCCAATGCCA
* * *
93836274 TGTCCTAGACATGGTCTTACATGGGATCACAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* * ** **
93836306 ATCGATGCCAATTCCATATCCCAGACATGGTCTTACAAAGGATCACATTTCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
* * * * *
93836371 GTCCCAGACATGGCCTTACACGAAATAACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * ** * * * *
93836402 ATCGATGCTAATGCCATATCTCAGAACAT-ATC---GATGCCATTC-C-CAT---TTCCCA-GAC
1 ATCGATGCCAATGCCATGTCCCAG-ACATGGTCTTACATGGGA-TCACAAATCGATGCCAATGCC
*** ** * **
93836457 ATGGT--TTTACATGGGATCACATATAGATGC-C-A
64 AT-GTCCCAGACATGGTCTTACATGGA-AT-CACAA
* * * ** ** * * * *
93836489 ATGCCATATCTC-A-GACATGGT--CTTACATGGGATCACAAAT-CGAT-TCGAAT-GACATGTC
1 AT-CGAT-GC-CAATGCCAT-GTCCCAGACAT-GG-TCTTACATGGGATCACAAATCG--ATG-C
* ** *** ** * *
93836547 CCA-GATATGGT--GTTACATGGGATCACA---AATCGATGCTA
57 CAATGCCAT-GTCCCAGACATGGTCTTACATGGAATC-A--CAA
* * * * ** * * *
93836585 ATGCCATATCC-TTGACATGGTCTTATA-A-GGGCTAACAT---AT-----A--GATGCCAATGC
1 AT-CGAT-GCCAATGCCAT-GTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGC
* *
93836637 CATGTCCCAGACATGGTCTTACA-CGAGATCACAT
63 CATGTCCCAGACATGGTCTTACATGGA-ATCACAA
** * * * * *
93836671 ATCGATGATAATGCCATGTACTAGACATGGTCTTACACGGGATCACATATCGATGCTAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
* * * *
93836736 GTCTCAGACATGGTCTTATACGGGAAT-ACAT
66 GTCCCAGACATGGTCTTACA-TGGAATCACAA
* * * * *
93836767 ATCGATGCCAATGCCATGTCCCAAAAATGGTCTTACACGAGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
* * *
93836832 GTCCCAGACATAGTCTTACATGGGATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* *
93836863 ATCGATGCCAATGTCATGTCCCAGACATGGTCTTACAT--G--C-C-AGTACGATG-C---G--A
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAAT-CGATGCCAATGCCA
* * * * *
93836916 TGTCCTAGACATGGTCTTACACGAAATCATAT
65 TGTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * ** * *
93836948 ATCGATGCCAATGTCATTTCCAAAACATTGTCATAGTTGGGAACACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
* ** *
93837013 GTCCCAGACATGGTCTTAAACAGAATCACAT
66 GTCCCAGACATGGTCTTACATGGAATCACAA
* * * * * * *
93837044 ATTGATGCGAAAGCCATGTCGCAGACATGGTCTAACATGAGATCACATATCGATGCCAATGCCAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
*
93837109 GCCCCAGACATGGTCTTACATAGGATCACATAACAAAGCCAA
66 GTCCCAGACATGGTCTTACAT-GG---A-AT--C--A--CAA
* * * *
93837151 TGCAACGAAGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGC
1 ---ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGC
* * * *
93837216 CATGTCCCATACATGGTCTTATATGGCATCACAT
63 CATGTCCCAGACATGGTCTTACATGGAATCACAA
* * *
93837250 ATCGATGCCAATTCCATGTCCCAGACATGGTGTTACAAGGGAT
1 ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
93837293 GCCAATGCCA
Statistics
Matches: 981, Mismatches: 208, Indels: 172
0.72 0.15 0.13
Matches are distributed among these distances:
84 10 0.01
85 73 0.07
86 24 0.02
87 17 0.02
88 17 0.02
89 17 0.02
90 10 0.01
91 13 0.01
92 8 0.01
93 4 0.00
94 9 0.01
95 17 0.02
96 658 0.67
97 11 0.01
98 4 0.00
99 2 0.00
100 1 0.00
101 3 0.00
103 2 0.00
105 3 0.00
107 2 0.00
109 2 0.00
110 74 0.08
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (96 bp):
ATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGCCAT
GTCCCAGACATGGTCTTACATGGAATCACAA
Found at i:93836194 original size:144 final size:143
Alignment explanation
Indices: 93835925--93839656 Score: 725
Period size: 144 Copynumber: 26.6 Consensus size: 143
93835915 AGAGTATATC
* * * * ** * * *
93835925 GATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGGA-CACATATCGATGTCAATCCCATGT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTAC-ACGGAATCACATATCGATGCCAATGCCATGT
* * * * *
93835989 CCCAGACATGGTCTTACATGGAATCACAAATCAATGCCAATTCCATGCCCCAAACACGGTCTTAC
65 -CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTAC
**
93836054 ATGGGATCACAAATT
129 AAAGGATCACAAATT
* *
93836069 GATGCCAATGCCATGTCCCGGACATGGTCTTACACGGAATCACATATTGATGCCAATGCCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGTC
* * * * * *
93836134 GCAGACATGGTCTAATATGGGATCACATATCGATGCCAATGCTATGTCCCACATATGGTCTTACA
66 -CAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
* *
93836199 CAGGATCACATAA-C
130 AAGGATCACA-AATT
* * * *
93836213 GATGCCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATCGATGTCAATGTCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGTC
* *
93836278 CTAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATATCCCAGACATGGTCTTACA
66 C-AGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
*
93836343 AAGGATCAC-ATTT
130 AAGGATCACAAATT
* * * * *
93836356 CGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCTAATGCCATAT
1 -GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT
* * ** * * *** **
93836421 CTCAGAACAT-ATC---GATGCCATTCCCAT-T---TCCCAGA---CATGGT--TTTACATGGGA
65 C-CAG-ACATGGTCTTACATGGGA-TCACATATCGATGCCA-ATTCCAT-GTCCCAAACATGGTC
*
93836473 TCACATATA-GATGC-C-AA-T
125 TTACA-A-AGGAT-CACAAATT
* * ** ** * * *
93836491 GCCATATCTC-A-GACATGGT--CTTACATGG-GAT-CAC-AAATC-GAT-TCGAATGAC-ATGT
1 G--AT-GC-CAATGCCAT-GTCCCAGACATGGTCTTACACGGAATCACATATCG-ATGCCAATG-
* * *** * * * * ***
93836546 CCCA-GAT--ATG--GTGTTAC--ATGG--GATCACAAATCGATGCTAATGCCATATCCTTGACA
59 -CCATG-TCCA-GACATGGT-CTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACA
* * * * * *
93836602 TGGTCTTATAAGGGCTAACATATA
120 TGGTCTTACAAAGGATCACAAATT
**
93836626 GATGCCAATGCCATGTCCCAGACATGGTCTTACAC-GAGATCACATATCGATGATAATGCCATGT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGA-ATCACATATCGATGCCAATGCCATGT
* * * * * * *
93836690 ACTAGACATGGTCTTACACGGGATCACATATCGATGCTAATGCCATGTCTCAGACATGGTCTTAT
65 -CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTAC
** * *
93836755 ACGGGAAT-ACATATC
129 AAAGG-ATCACAAATT
* *
93836770 GATGCCAATGCCATGTCCCAAAAATGGTCTTACAC-GAGATCACATATCGATGCCAATGCCATGT
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGA-ATCACATATCGATGCCAATGCCATGT
* *
93836834 CCCAGACATAGTCTTACATGGGATCACATATCGATGCCAATGT-CATGTCCCAGACATGGTCTTA
65 -CCAGACATGGTCTTACATGGGATCACATATCGATGCCAAT-TCCATGTCCCAAACATGGTCTTA
*
93836898 C--ATG--C-C--A--
128 CAAAGGATCACAAATT
* * * * * * * *
93836905 G-T-ACGATGCGATGTCCTAGACATGGTCTTACACGAAATCATATATCGATGCCAATGTCATTTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGTC
* * * ** * * *
93836968 CAAAACATTGTCATAGTTGGGAACACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTA-A
66 C-AGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
* *
93837032 ACAGAATCACATATT
130 A-AGGATCACAAATT
* * * * *
93837047 GATGCGAAAGCCATGTCGCAGACATGGTCTAACA-TGAGATCACATATCGATGCCAATGCCATGC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGA-ATCACATATCGATGCCAATGCCATG-
* * * *
93837111 CCCAGACATGGTCTTACATAGGATCACATAACAAAGCCAATGCAACGAAGCCAATGCCATGTCCC
64 TCCAGACATGGTCTTACATGGGATCACAT----------AT----CGATGCCAATTCCATGTCCC
* ** * *
93837176 AGACATGGTCTTACACGGGATCACATATC
115 AAACATGGTCTTACAAAGGATCACAAATT
* * * * *
93837205 GATGCCAATGCCATGTCCCATACATGGTCTTATATGGCATCACATATCGATGCCAATTCCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * * * *
93837270 CCAGACATGGTGTTACA-AGG----------GATGCCAATGCCATGTCCTAGACATGGTCTTAC-
65 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
*
93837323 -ATG-T--C-AA-T
130 AAGGATCACAAATT
* * * * * * *
93837331 -A---CGATGCCATGTCCCAGACATGGTCTTAAACGAAATAACATATCGATACTAATGCCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * * ** * * *** *
93837392 CCAAAACAT-ATC---GATGCCACTCCCAT-T---TCCCAGA---CATGGT--TTTACTTAGGAT
65 CC-AGACATGGTCTTACATGGGA-TCACATATCGATGCCA-ATTCCAT-GTCCCAAACAT-GG-T
* *
93837444 C--ACATATGGCTGC-C-AATGT
124 CTTACA-AAGGAT-CACAAAT-T
* * * ** ** * *
93837463 CATGTCCCA-GACATGGT--CTTACATGG-GAT-CAC-AAATC-GAT-TCGAATGCC------AT
1 GATG-CCAATGCCAT-GTCCCAGACATGGTCTTACACGGAATCACATATCG-ATGCCAATGCCAT
* * * ** **** *
93837514 GTCCTAGACATGGTCTTTCATGGGATCACATATCGATGCTAATGCCACATCATTGACATGATCTT
63 GTCC-AGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTT
** * * *
93837579 ACAGGGGATAACATATC
127 ACAAAGGATCACAAATT
* * * *
93837596 GATGCCAATGCCATTTCCCAGACATGGTCTTACA-TG--TCA-TTA-CGATGCC-ATG---T-CC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGTC
* * ** ** * * * * **
93837651 CAGACATTGTCTTACACGAAATCATGTATCGATGCCAATGCCATTTCCCAAACATTGTCATACTT
66 CAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACAA
* * * *
93837716 GGGAACACATATA
131 AGGATCACAAATT
* * * * *
93837729 GATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCTAATGCCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGTC
* * ** * * *** *** *
93837794 TCAGAACAT-ATC---GATGCCATTCCCAT-T---TCCCAGA---CATGGTTTTACTGA-GGAC-
66 -CAG-ACATGGTCTTACATGGGA-TCACATATCGATGCCA-ATTCCAT-GTCCCAAACATGGTCT
* * *
93837846 CACATATGGCTGC-C-AATGT
126 TACA-AAGGAT-CACAAAT-T
* * * ** ** * ** * ** *
93837865 CATGTCCCA-GACATGGT--CTTACATGG-GAT-CAC-AAATCA-ATGCCAATTTC-ATGCC--C
1 GATG-CCAATGCCAT-GTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATG
* ** * * * * *
93837920 --CAAACACAGTCTTACATGGGATCACAAATTGATGCCAATGCCATGTCCCAGACATGGTGTTAC
64 TCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTAC
* * *
93837983 ACAGAATCACATATT
129 AAAGGATCACAAATT
* * * * *
93837998 GATGCCAATGCCATGTCGCAGACATGGTATAACATGGGATCACATATCGATGCCAATGCCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * * * * * *
93838063 CCAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGCCATGTCCTAGACATGGTCTTTCA
65 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
** * *
93838128 TGGGATCACATATC
130 AAGGATCACAAATT
* * *** * * * *
93838142 GATGCTAATGCCATATCATTGACATGATCTTACAGGGGATAACATATCGATGCCAATGCCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * *
93838207 CCAGACATGGTCTTACATGGGATCACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACA
65 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
** * *
93838272 TGGGATCACATATC
130 AAGGATCACAAATT
** * *
93838286 GATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAATGCCATGT
1 GATGCC-AATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT
* ** * * * * * *
93838350 CCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAGAACATATCGATG
65 -CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCA-AAC--AT-G--G
* * *
93838415 CCACTGCCATTTCCCAAACATGGATTTAC--ATGG
123 ----T--C--TT-AC-AA-A-GGA-TCACAAAT-T
* * * * * *
93838448 GAT-CACATAT-CGATG-CCAATGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGAT
1 GATGC-CA-ATGCCATGTCCCA-GACATG-----G---T---CTTACACGGAATCACATATCGAT
*** * * * * * * **
93838510 TTGAATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCCTT
52 GCCAATGCCATGT-CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCA
* * ** * * *
93838575 GACATGGTTTTACAGGGGATAACATATC
116 AACATGGTCTTACAAAGGATCACAAATT
*
93838603 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * **
93838668 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAAATCCATGTCCCAGACATTTTCTTACA
65 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
* * *
93838733 AGGGATCACATATC
130 AAGGATCACAAATT
* * * * * *
93838747 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATGCCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * ** * * ***** ** *
93838812 CCAGAACAT-ATC---GATGCCACTGC-CAT-T---TCCCAA--ACATG-GATTTACATGGGATC
65 CCAG-ACATGGTCTTACATGGGA-T-CACATATCGATGCCAATTCCATGTCCCAAACATGGTCTT
**
93838865 ACATATCGATGC-C-AA-T
127 ACA-AAGGAT-CACAAATT
* * ** ** * * * *
93838881 GCCATGTCTC-A-GACATG-GCCTTACATGG-GAT-CAC-AAATC-GAT-TTGAATG-CAATGTC
1 G--ATG-C-CAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCG-ATGCCAATGCC
* * * * * *** *
93838937 ----CCAGATATGGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCCTTGACATGGTTT
61 ATGTCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCT
** * * *
93838998 TACAGGGGATAACATATC
126 TACAAAGGATCACAAATT
* *
93839016 GATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * **
93839081 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAAATCCATGTCCCAGACATTTTCTTACA
65 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
* * *
93839146 AGGGATCACATATC
130 AAGGATCACAAATT
* * * * * *
93839160 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATGCCATATC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * ** * * ***** ** *
93839225 CCAGAACAT-ATC---GATGCCACTGC-CAT-T---TCCCAA--ACATG-GATTTACATGGGATC
65 CCAG-ACATGGTCTTACATGGGA-T-CACATATCGATGCCAATTCCATGTCCCAAACATGGTCTT
**
93839278 ACATATCGATGC-C-AA-T
127 ACA-AAGGAT-CACAAATT
* * ** ** * * * *
93839294 GCCATGTCTC-A-GACATG-GCCTTACATGG-GAT-CAC-AAATC-GAT-TTGAATG-CAATGTC
1 G--ATG-C-CAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCG-ATGCCAATGCC
* * * * * *** *
93839350 ----CCAGATATGGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCCTTGACATGGTTT
61 ATGTCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCT
** * * *
93839411 TACAGGGGATAACATATC
126 TACAAAGGATCACAAATT
* * *
93839429 GATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCTAATGCCATGTA
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
* * * * *
93839494 CTAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATA
65 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACA
** * * *
93839559 TGGGAACACATATC
130 AAGGATCACAAATT
* * * * *
93839573 GATGCCATTGCCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTC
1 GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGT-
*
93839638 CCAAACATGGTCTTACATG
65 CCAGACATGGTCTTACATG
93839657 TCATTACGAT
Statistics
Matches: 2617, Mismatches: 650, Indels: 642
0.67 0.17 0.16
Matches are distributed among these distances:
119 1 0.00
122 52 0.02
123 5 0.00
124 22 0.01
125 27 0.01
126 6 0.00
127 28 0.01
128 26 0.01
129 2 0.00
130 34 0.01
131 47 0.02
132 54 0.02
133 312 0.12
134 107 0.04
135 80 0.03
136 84 0.03
137 47 0.02
138 51 0.02
139 33 0.01
140 3 0.00
141 22 0.01
142 21 0.01
143 10 0.00
144 1248 0.48
145 27 0.01
147 3 0.00
148 1 0.00
150 2 0.00
154 8 0.00
155 17 0.01
156 7 0.00
157 4 0.00
158 113 0.04
159 5 0.00
160 1 0.00
161 7 0.00
162 17 0.01
163 4 0.00
167 1 0.00
169 1 0.00
170 3 0.00
172 2 0.00
173 72 0.03
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (143 bp):
GATGCCAATGCCATGTCCCAGACATGGTCTTACACGGAATCACATATCGATGCCAATGCCATGTC
CAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATGTCCCAAACATGGTCTTACAA
AGGATCACAAATT
Found at i:93836455 original size:29 final size:29
Alignment explanation
Indices: 93836397--93836455 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
93836387 TACACGAAAT
* * *
93836397 AACATATCGATGCTAATGCCATATCTCAG
1 AACATATCGATGCCAATCCCATATCCCAG
* *
93836426 AACATATCGATGCCATTCCCATTTCCCAG
1 AACATATCGATGCCAATCCCATATCCCAG
93836455 A
1 A
93836456 CATGGTTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (29 bp):
AACATATCGATGCCAATCCCATATCCCAG
Found at i:93836486 original size:77 final size:77
Alignment explanation
Indices: 93836350--93836503 Score: 200
Period size: 77 Copynumber: 2.0 Consensus size: 77
93836340 ACAAAGGATC
* * * *
93836350 ACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCTAATG
1 ACATATCGATGCCAATCCCATGTCCCAGACATGGCCTTACACGAAATAACATATAGATGCCAATG
93836415 CCATATCTCAGA
66 CCATATCTCAGA
* * ** * ** *
93836427 ACATATCGATGCCATTCCCATTTCCCAGACATGGTTTTACATGGGATCACATATAGATGCCAATG
1 ACATATCGATGCCAATCCCATGTCCCAGACATGGCCTTACACGAAATAACATATAGATGCCAATG
93836492 CCATATCTCAGA
66 CCATATCTCAGA
93836504 CATGGTCTTA
Statistics
Matches: 65, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
77 65 1.00
ACGTcount: A:0.31, C:0.27, G:0.16, T:0.27
Consensus pattern (77 bp):
ACATATCGATGCCAATCCCATGTCCCAGACATGGCCTTACACGAAATAACATATAGATGCCAATG
CCATATCTCAGA
Found at i:93836504 original size:48 final size:48
Alignment explanation
Indices: 93836427--93837292 Score: 806
Period size: 48 Copynumber: 18.0 Consensus size: 48
93836417 ATATCTCAGA
* * * *
93836427 ACATATCGATGCCATTCCCATTTCCCAGACATGGTTTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
93836475 ACATATAGATGCCAATGCCATATCTCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * *
93836523 ACAAATCGATTCGAATGACATGTCCCAGATATGGTGTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * ** * * * *
93836571 ACAAATCGATGCTAATGCCATATCCTTGACATGGTCTTATAAGGGCTA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
93836619 ACATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
** * * *
93836667 ACATATCGATGATAATGCCATGTACTAGACATGGTCTTACACGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93836715 ACATATCGATGCTAATGCCATGTCTCAGACATGGTCTTATACGGGAAT-
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGG-ATC
* * * *
93836763 ACATATCGATGCCAATGCCATGTCCCAAAAATGGTCTTACACGAGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
*
93836811 ACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
*
93836859 ACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACAT--G--C
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * **
93836903 -CAGTA-CGATG-C---G--ATGTCCTAGACATGGTCTTACACGAAATC
1 ACA-TATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * * * ** *
93836944 ATATATCGATGCCAATGTCATTTCCAAAACATTGTCATAGTTGGGAAC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* ** *
93836992 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAAACAGAATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * *
93837040 ACATATTGATGCGAAAGCCATGTCGCAGACATGGTCTAACATGAGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
93837088 ACATATCGATGCCAATGCCATGCCCCAGACATGGTCTTACATAGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
93837136 ACATAACAAAGCCAATGCAACGAA-GCCAATGCCATGTCCCAGACATGGTCTTACACGGGATC
1 ACATATC---G---ATGC--C-AATGCC-ATG---TC--CCAGACATGGTCTTACATGGGATC
* * *
93837198 ACATATCGATGCCAATGCCATGTCCCATACATGGTCTTATATGGCATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
93837246 ACATATCGATGCCAATTCCATGTCCCAGACATGGTGTTACAAGGGAT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGAT
93837293 GCCAATGCCA
Statistics
Matches: 662, Mismatches: 125, Indels: 62
0.78 0.15 0.07
Matches are distributed among these distances:
37 21 0.03
39 1 0.00
41 3 0.00
42 7 0.01
43 8 0.01
44 3 0.00
46 2 0.00
47 2 0.00
48 556 0.84
49 2 0.00
50 1 0.00
51 1 0.00
53 5 0.01
54 8 0.01
56 8 0.01
57 5 0.01
59 1 0.00
62 28 0.04
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:93836508 original size:413 final size:410
Alignment explanation
Indices: 93836022--93839670 Score: 2547
Period size: 413 Copynumber: 8.8 Consensus size: 410
93836012 TCACAAATCA
* * * * * * *
93836022 ATGCCAATTCCATGCCCCAAACACGGTCTTACATGGGATCACAAATTGATGCCAATGCCATGTCC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATAT-C
* * * * * * *
93836087 CGGACATGGTCTTACACGGAATCACATATTGATGCCAATGCCATGTCGCAGACATGGTCTAATAT
65 CAGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT
* * * * *
93836152 GGGATCACATATCGATGCCAATGCTATGTCCCACATATGGTCTTACACAGGATCACATAACGATG
130 GGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATATCGATG
* * *
93836217 CCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATCGATGTCAATGTCATGTCCTAG
195 CCAATGCCATGTCCCAGACATGGTCTTACT-GGGATCACATATCGATGCCAATGCCATGTCCCAG
* *
93836282 ACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATATCCCAGACATGGTCTTACAAAGG
259 ACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATGGTCTTAC--AGG
* * * ** * *
93836347 ATCACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGCTA
322 AT-ACA-TTCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCA
*
93836412 ATGCCATATCTCAGA-A-CATAT-CG
385 ATGCCATGTCTCAGACAGCATATGCG
* * * * *
93836435 ATGCCATTCCCATTTCCCAGACATGGTTTTACATGGGATCACATATAGATGCCAATGCCATATCT
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATATC-
* * * * * * * *
93836500 CAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGACATGTCCCAGATATGGTGTTACAT
65 CAGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT
* * * ** * * * *
93836565 GGGATCACAAATCGATGCTAATGCCATATCCTTGACATGGTCTTATA-AGGGCTAACATATAGAT
130 GGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATA-GGATCACATATCGAT
* * ** * *
93836629 GCCAATGCCATGTCCCAGACATGGTCTTACACGAGATCACATATCGATGATAATGCCATGTACTA
194 GCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCA
* * * *
93836694 GACATGGTCTTACACGGGATCACATATCGATGCTAATGCCATGTCTCAGACATGGTCTTATACGG
258 GACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATGGTC-T-TACAG
* * *
93836759 GAATACATATCGATGCCAATGCCATGTCCCAAAAATGGTCTTACACGAGATCACATATCGATGCC
321 G-ATACAT-TCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCC
* *
93836824 AATGCCATGTCCCAGACATAGTCTTACATGGGATCACATATCG
384 AATGCCATGTCTCAGAC--AG-----C-----AT---AT-GCG
* *
93836867 ATGCCAATGTCATGTCCCAGACATGGTCTTACAT--G--C-CAGTA-CGATG-C---G--ATGTC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACA-TATCGATGCCAATGCCATATC
** * * * * * * * * **
93836920 CTAGACATGGTCTTACACGAAATCATATATCGATGCCAATGTCATTTCCAAAACATTGTCATAGT
65 C-AGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACA
* * * * *
93836985 TGGGAACACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTAAACAGAATCACATATTGAT
129 TGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATATCGAT
* * * * * *
93837050 GCGAAAGCCATGTCGCAGACATGGTCTAACATGAGATCACATATCGATGCCAATGCCATGCCCCA
194 GCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCA
* * * *
93837115 GACATGGTCTTACATAGGATCACATAACAAAGCCAATGCAACGAAGCCAATGCCATGTCCCAGAC
258 GACATGGTCTTACATGGGATCACAT----------AT----CGATGCTAATGCCATATCCCAGAC
* * *
93837180 ATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCATACATGGTCTTATATGGCAT
309 ATGGTCTTACA--GGAT-ACAT-TCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGAT
* * * * * *
93837245 CACATATCGATGCCAATTCCATGTCCCAGACATGGTGTTACAAGGG
370 CACATATCGATGCCAATGCCATGTCTCAGACA----G-CATATGCG
* *
93837291 ATGCCAATGCCATGTCCTAGACATGGTCTTACAT--G-TCA-ATA-CGATGCC-ATG---T-CCC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATATCC
* ** * * *
93837346 AGACATGGTCTTAAACGAAATAACATATCGATACTAATGCCATAT--C---C-----C--A-A--
66 AGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
* * * * * * *
93837396 --A--ACATATCGATGCCACTCCCATTTCCCAGACATGGTTTTACTTAGGATCACATATGGCTGC
131 GGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATATCGATGC
* * * * *
93837457 CAATGTCATGTCCCAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGCCATGTCCTAGA
196 CAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCAGA
* * *** *
93837522 CATGGTCTTTCATGGGATCACATATCGATGCTAATGCCACATCATTGACATGATCTTACAGGGGA
260 CATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATGGTCTTACA--GGA
* * ** * * *
93837587 TAACATATCGATGCCAATGCCATTTCCCAGACATGGTCTTACATGTCATTACGAT-GCCATGTCC
323 T-ACAT-TCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCAC-ATATCGATG-CC
* * * *
93837651 CA-GACATTGTCTTACACGAAATCATGTAT-CG
384 AATGCCA-TGTC-T-CA-GACAGCA--TATGCG
* * * * * * * *
93837682 ATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAACACATATAGATGCCAATGCCATGTCC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATAT-C
* ** *
93837747 CAGACATGGCCTTACACGAAATAACATATCGATGCTAATGCCA--T-------A---TC-T-CA-
65 CAGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT
* * * * * * *
93837797 --GA--ACATATCGATGCCATTCCCATTTCCCAGACATGGTTTTAC-TGAGGACCACATATGGCT
130 GGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACAT-AGGATCACATATCGAT
* * * ** *
93837857 GCCAATGTCATGTCCCAGACATGGTCTTACATGGGATCACAAATCAATGCCAATTTCATGCCCCA
194 GCCAATGCCATGTCCCAGACATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCCA
* ** * * * * *
93837922 AACACAGTCTTACATGGGATCACAAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACACAG
258 GACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATGGTCTT--ACAG
* * * * * *
93837987 AATCACATATTGATGCCAATGCCATGTCGCAGACATGGTATAACATGGGATCACATATCGATGCC
321 GAT-ACAT-TCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCC
* *
93838052 AATGCCATGTCCCAGACATGGTCTTACATGGGATCACAAATCG
384 AATGCCATGTCTCAGACA--G-----CAT---AT------GCG
* * * * *
93838095 ATTCGAATGCCATGTCCTAGACATGGTCTTTCATGGGATCACATATCGATGCTAATGCCATAT-C
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATATCC
* *
93838159 ATTGACATGATCTTACAGGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACA
66 A--GACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACA
* *
93838224 TGGGATCACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGAT
129 TGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATATCGAT
** *
93838289 GCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCC
194 GCC-AATGCCATGTCCCAGACATGGTCTTAC-TGGGATCACATATCGATGCCAATGCCATGTCCC
* ** * * *
93838353 AGACATGGTCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAG--A-------AC---
257 AGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATGGTCTTACAGG
* *
93838406 AT--A-TCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCCAA
322 ATACATTCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATATCGATGCCAA
* *
93838467 TGCCATGTCTCAGACATGGCCTTACATGGG
386 TGCCATGTCTCAGACA--G-C--ATATGCG
* * * * *
93838497 ATCACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATGCTA
1 AT-GC----C------AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * *
93838562 ATGCCATATCCTTGACATGGTTTTACAGGGGATAACATATCGATGCCAATGCCATGTCCCAGACA
55 ATGCCATATCC-AGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACA
* *
93838627 TGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
119 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATC
** *
93838692 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAAT
184 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTAC-TGGGATCACATATCGATGCCAAT
* ** * * *
93838756 GCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAG--A--
247 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATG
* *
93838817 -----AC---AT--A-TCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATA
312 GTCTTACAGGATACATTCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATA
* *
93838870 TCGATGCCAATGCCATGTCTCAGACATGGCCTTACATGGG
376 TCGATGCCAATGCCATGTCTCAGACA--G-C--ATATGCG
* * * * *
93838910 ATCACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATGCTA
1 AT-GC----C------AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
93838975 ATGCCATATCCTTGACATGGTTTTACAGGGGATAACATATCGATGCCAATGTCATGTCCCAGACA
55 ATGCCATATCC-AGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACA
* *
93839040 TGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
119 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATC
** *
93839105 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAAT
184 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTAC-TGGGATCACATATCGATGCCAAT
* ** * * *
93839169 GCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAG--A--
247 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATG
* *
93839230 -----AC---AT--A-TCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATA
312 GTCTTACAGGATACATTCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATA
* *
93839283 TCGATGCCAATGCCATGTCTCAGACATGGCCTTACATGGG
376 TCGATGCCAATGCCATGTCTCAGACA--G-C--ATATGCG
* * * * *
93839323 ATCACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATGCTA
1 AT-GC----C------AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
* * * *
93839388 ATGCCATATCCTTGACATGGTTTTACAGGGGATAACATATCGATGCCAATGTCATGTCCCAGACA
55 ATGCCATATCC-AGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACA
* * * * *
93839453 TGGTCTTACACGGGATCACATATCGATGCTAATGCCATGTACTAGACATGGTCTTACATGGGATC
119 TGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATC
* * * *
93839518 ACATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAACACATATCGATGCCATTG
184 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTA-CTGGGATCACATATCGATGCCAATG
* * * * *
93839583 CCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAAACATGG
248 CCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATGG
*
93839648 TCTTACATG-T-CATTACGATGCCA
313 TCTTACAGGATACATT-CGATGCCA
93839671 TAGGTCAGCT
Statistics
Matches: 2750, Mismatches: 329, Indels: 300
0.81 0.10 0.09
Matches are distributed among these distances:
390 1 0.00
391 112 0.04
392 10 0.00
393 1 0.00
394 4 0.00
395 8 0.00
396 6 0.00
397 3 0.00
398 3 0.00
399 2 0.00
400 3 0.00
401 11 0.00
402 254 0.09
403 2 0.00
404 3 0.00
405 127 0.05
406 2 0.00
407 1 0.00
408 2 0.00
409 1 0.00
411 3 0.00
412 7 0.00
413 1577 0.57
414 6 0.00
415 6 0.00
416 1 0.00
418 2 0.00
419 1 0.00
420 1 0.00
421 182 0.07
422 5 0.00
423 1 0.00
424 80 0.03
425 9 0.00
426 4 0.00
427 19 0.01
428 4 0.00
430 6 0.00
431 2 0.00
432 166 0.06
433 8 0.00
434 3 0.00
435 100 0.04
437 1 0.00
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (410 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATATCC
AGACATGGTCTTACACGGGATAACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
GGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATAGGATCACATATCGATGC
CAATGCCATGTCCCAGACATGGTCTTACTGGGATCACATATCGATGCCAATGCCATGTCCCAGAC
ATGGTCTTACATGGGATCACATATCGATGCTAATGCCATATCCCAGACATGGTCTTACAGGATAC
ATTCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATGCCA
TGTCTCAGACAGCATATGCG
Found at i:93836547 original size:173 final size:173
Alignment explanation
Indices: 93836280--93836594 Score: 459
Period size: 173 Copynumber: 1.8 Consensus size: 173
93836270 GTCATGTCCT
* *
93836280 AGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATATCCCAGACATGGTCTTACAAA
1 AGACATGGTCTTACATGGGATCACATATAGATGCCAATGCCATATCCCAGACATGGTCTTACAAA
** * *
93836345 GGATCACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACATATCGATGC
66 GGATCACAAATCGATGCCAATGACATGTCCCAGACATGGCCTTACACGAAATAACAAATCGATGC
93836410 TAATGCCATATCTCAGAACATATCGATGCCATTCCCATTTCCC
131 TAATGCCATATCTCAGAACATATCGATGCCATTCCCATTTCCC
* * **
93836453 AGACATGGTTTTACATGGGATCACATATAGATGCCAATGCCATATCTCAGACATGGTCTTACATG
1 AGACATGGTCTTACATGGGATCACATATAGATGCCAATGCCATATCCCAGACATGGTCTTACAAA
* * * ** * ** *
93836518 GGATCACAAATCGATTCGAATGACATGTCCCAGATATGGTGTTACATGGGATCACAAATCGATGC
66 GGATCACAAATCGATGCCAATGACATGTCCCAGACATGGCCTTACACGAAATAACAAATCGATGC
93836583 TAATGCCATATC
131 TAATGCCATATC
93836595 CTTGACATGG
Statistics
Matches: 123, Mismatches: 19, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
173 123 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (173 bp):
AGACATGGTCTTACATGGGATCACATATAGATGCCAATGCCATATCCCAGACATGGTCTTACAAA
GGATCACAAATCGATGCCAATGACATGTCCCAGACATGGCCTTACACGAAATAACAAATCGATGC
TAATGCCATATCTCAGAACATATCGATGCCATTCCCATTTCCC
Found at i:93836604 original size:221 final size:221
Alignment explanation
Indices: 93836206--93837108 Score: 562
Period size: 221 Copynumber: 4.0 Consensus size: 221
93836196 ACACAGGATC
* * *
93836206 ACATAACGATGCCAATGCCATGTCCCAGACATGGTCTTACTCGGGATCACATATCGATGTCAATG
1 ACATAACGATGCCAATCCCATGTCCCAGACATGGTCTTACTCGGGATCACATATAGATGCCAATG
* * * **
93836271 TCATGTCCTAGACATGGTCTTACATGGGATCACATATCGATGCCAATTCCATATCCCAGACATGG
66 CCATATCCTAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATCCCAGACATGG
** *
93836336 TCTTACAAAGGATCACATTTCGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATAACA
131 TCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACACGAAATAACA
93836401 TATCGATGCTAATGCCATATCTCAGA
196 TATCGATGCTAATGCCATATCTCAGA
* * * *
93836427 ACATATCGATGCCATTCCCATTTCCCAGACATGGTTTTACAT-GGGATCACATATAGATGCCAAT
1 ACATAACGATGCCAATCCCATGTCCCAGACATGGTCTTAC-TCGGGATCACATATAGATGCCAAT
* * * *
93836491 GCCATAT-CTCAGACATGGTCTTACATGGGATCACAAATCGATTCGAATGACATGTCCCAGATAT
65 GCCATATCCT-AGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATCCCAGACAT
* ** * ** * * * ***
93836555 GGTGTTACATGGGATCACAAATCGATGCTAATGCCATATCCTTGACATGGTCTTATAAGGGCTAA
129 GGTCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACACGAAATAA
* *
93836620 CATATAGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAGA
194 CATATCGATGCTAATGCCA--T-------A---TC-T---C-AGA
* ** * * * * * *
93836665 TCACATATCGATGATAATGCCATGTACTAGACATGGTCTTACACGGGATCACATATCGATGCTAA
1 --ACATAACGATGCCAATCCCATGTCCCAGACATGGTCTTACTCGGGATCACATATAGATGCCAA
* * * * * * * *
93836730 TGCCATGT-CTCAGACATGGTCTTATACGGGAAT-ACATATCGATGCCAATGCCATGTCCCAAAA
64 TGCCATATCCT-AGACATGGTCTTACATGGG-ATCACAAATCGATGCCAATGACATATCCCAGAC
* * * * * * **
93836793 ATGGTCTTAC-ACGAGATCACATATCGATGCCAATGCCATGTCCCAGACATAGTCTTACATGGGA
127 ATGGTCTTACAAAG-GATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACACGAAA
* * * * *
93836857 TCACATATCGATGCCAATGTCATGTCCCAG-
191 TAACATATCGATGCTAATGCCATATCTCAGA
* * * * * ** * *
93836887 ACATGGTCTTAC-ATGCCAGTACGATGCGATGTCCTAGACATGGTCTTACACGAAATCATATATC
1 ACA-----TAACGATGCC---A--ATCCCATGTCCCAGACATGGTCTTACTCGGGATCACATATA
* * * * * * ** * * * *
93836951 GATGCCAATGTCATTTCCAAAACATTGTCATAGTTGGGAACACATATCGATGCCAATGCCATGTC
56 GATGCCAATGCCATATCCTAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATC
* * * * * * * * *
93837016 CCAGACATGGTCTTA-AACAGAATCACATATTGATGCGAAAGCCATGTCGCAGACATGGTCTAAC
121 CCAGACATGGTCTTACAA-AGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTAC
* * * *
93837080 ATGAGATCACATATCGATGCCAATGCCAT
185 ACGAAATAACATATCGATGCTAATGCCAT
93837109 GCCCCAGACA
Statistics
Matches: 542, Mismatches: 102, Indels: 68
0.76 0.14 0.10
Matches are distributed among these distances:
220 5 0.01
221 174 0.32
222 1 0.00
223 3 0.01
224 4 0.01
225 2 0.00
227 1 0.00
228 3 0.01
229 164 0.30
230 3 0.01
233 2 0.00
234 1 0.00
237 1 0.00
238 4 0.01
239 1 0.00
240 171 0.32
241 2 0.00
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.26
Consensus pattern (221 bp):
ACATAACGATGCCAATCCCATGTCCCAGACATGGTCTTACTCGGGATCACATATAGATGCCAATG
CCATATCCTAGACATGGTCTTACATGGGATCACAAATCGATGCCAATGACATATCCCAGACATGG
TCTTACAAAGGATCACAAATCGATGCCAATGCCATATCCCAGACATGGCCTTACACGAAATAACA
TATCGATGCTAATGCCATATCTCAGA
Found at i:93837304 original size:37 final size:38
Alignment explanation
Indices: 93837251--93837358 Score: 130
Period size: 37 Copynumber: 2.9 Consensus size: 38
93837241 GCATCACATA
* *
93837251 TCGATGCCAATTCCATGTCCCAGACATGGTGTTACAAG
1 TCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAG
* * *
93837289 -GGATGCCAATGCCATGTCCTAGACATGGTCTTACATG
1 TCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAG
* * *
93837326 TCAAT-ACGATGCCATGTCCCAGACATGGTCTTA
1 TCGATGCCAATGCCATGTCCCAGACATGGTCTTA
93837359 AACGAAATAA
Statistics
Matches: 59, Mismatches: 10, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
37 57 0.97
38 2 0.03
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (38 bp):
TCGATGCCAATGCCATGTCCCAGACATGGTCTTACAAG
Found at i:93837417 original size:29 final size:29
Alignment explanation
Indices: 93837367--93837423 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 29
93837357 TAAACGAAAT
* *
93837367 AACATATCGATACTAATGCCATATCCCAA
1 AACATATCGATACCAATCCCATATCCCAA
* * *
93837396 AACATATCGATGCCACTCCCATTTCCCA
1 AACATATCGATACCAATCCCATATCCCA
93837424 GACATGGTTT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.35, C:0.33, G:0.07, T:0.25
Consensus pattern (29 bp):
AACATATCGATACCAATCCCATATCCCAA
Found at i:93837471 original size:48 final size:48
Alignment explanation
Indices: 93837397--93837790 Score: 263
Period size: 48 Copynumber: 8.4 Consensus size: 48
93837387 ATATCCCAAA
* * * * *
93837397 ACATATCGATGCCACTCCCATTTCCCAGACATGGTTTTACTTAGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
* * * *
93837445 ACATATGGCTGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
* * * *
93837493 ACAAATCGATTCGAATGCCATGTCCTAGACATGGTCTTT-CATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGT-TTTACATGGGATC
* ** *** * * * *
93837541 ACATATCGATGCTAATGCCACATCATTGACATGATCTTACAGGGGATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
* *
93837589 ACATATCGATGCCAATGCCATTTCCCAGACATGGTCTTACAT--G-T-
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
* * * * **
93837633 -CAT-T--A---CGATGCCATGTCCCAGACATTGTCTTACACGAAATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
** * * * ** * *
93837674 ATGTATCGATGCCAATGCCATTTCCCAAACATTGTCATACTTGGGAAC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
* ** * ** *
93837722 ACATATAGATGCCAATGCCATGTCCCAGACATGGCCTTACACGAAATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
*
93837770 ACATATCGATGCTAATGCCAT
1 ACATATCGATGCCAATGCCAT
93837791 ATCTCAGAAC
Statistics
Matches: 265, Mismatches: 68, Indels: 26
0.74 0.19 0.07
Matches are distributed among these distances:
37 26 0.10
40 2 0.01
42 2 0.01
43 4 0.02
45 2 0.01
46 1 0.00
47 2 0.01
48 224 0.85
49 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.18, T:0.28
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTTTTACATGGGATC
Found at i:93837827 original size:29 final size:29
Alignment explanation
Indices: 93837769--93837827 Score: 73
Period size: 29 Copynumber: 2.0 Consensus size: 29
93837759 TACACGAAAT
* * *
93837769 AACATATCGATGCTAATGCCATATCTCAG
1 AACATATCGATGCCAATCCCATATCCCAG
* *
93837798 AACATATCGATGCCATTCCCATTTCCCAG
1 AACATATCGATGCCAATCCCATATCCCAG
93837827 A
1 A
93837828 CATGGTTTTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.32, C:0.29, G:0.12, T:0.27
Consensus pattern (29 bp):
AACATATCGATGCCAATCCCATATCCCAG
Found at i:93837873 original size:48 final size:48
Alignment explanation
Indices: 93837799--93838403 Score: 719
Period size: 48 Copynumber: 12.6 Consensus size: 48
93837789 ATATCTCAGA
* * * * *
93837799 ACATATCGATGCCATTCCCATTTCCCAGACATGGTTTTAC-TGAGGACC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGATC
* * *
93837847 ACATATGGCTGCCAATGTCATGTCCCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * ** * * **
93837895 ACAAATCAATGCCAATTTCATGCCCCAAACACAGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * ** *
93837943 ACAAATTGATGCCAATGCCATGTCCCAGACATGGTGTTACACAGAATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93837991 ACATATTGATGCCAATGCCATGTCGCAGACATGGTATAACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
93838039 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * *
93838087 ACAAATCGATTCGAATGCCATGTCCTAGACATGGTCTTTCATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *** * * *
93838135 ACATATCGATGCTAATGCCATATCATTGACATGATCTTACAGGGGATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
93838183 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
*
93838231 ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
** *
93838279 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATC
1 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATC
* ** *
93838327 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93838375 ATATATCAATGCTAATGCCATATCCCAGA
1 ACATATCGATGCCAATGCCATGTCCCAGA
93838404 ACATATCGAT
Statistics
Matches: 476, Mismatches: 78, Indels: 6
0.85 0.14 0.01
Matches are distributed among these distances:
47 3 0.01
48 468 0.98
49 5 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:93837973 original size:96 final size:96
Alignment explanation
Indices: 93837799--93839656 Score: 1123
Period size: 96 Copynumber: 18.4 Consensus size: 96
93837789 ATATCTCAGA
* * * * * * *
93837799 ACATATCGATGCCATTCCCATTTCCCAGACATGGTTTTAC-TGAGGACCACATATGGCTGCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG-GGATCACATATCGATGCCAAT
*
93837863 GTCATGTCCCAGACATGGTCTTACATGGGATC
65 GCCATGTCCCAGACATGGTCTTACATGGGATC
* * ** * * ** * *
93837895 ACAAATCAATGCCAATTTCATGCCCCAAACACAGTCTTACATGGGATCACAAATTGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* ** *
93837960 CCATGTCCCAGACATGGTGTTACACAGAATC
66 CCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93837991 ACATATTGATGCCAATGCCATGTCGCAGACATGGTATAACATGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
93838056 CCATGTCCCAGACATGGTCTTACATGGGATC
66 CCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * *
93838087 ACAAATCGATTCGAATGCCATGTCCTAGACATGGTCTTTCATGGGATCACATATCGATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* *** * * *
93838152 CCATATCATTGACATGATCTTACAGGGGATA
66 CCATGTCCCAGACATGGTCTTACATGGGATC
*
93838183 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
93838248 CCATGTCCCAGACATGGTCTTACATGGGATC
66 CCATGTCCCAGACATGGTCTTACATGGGATC
** *
93838279 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAAT
1 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAT
* ** *
93838343 GCCATGTCCCAGACATGGTCTTACACGAAATA
65 GCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * ** ** * * *
93838375 ATATATCAATGCTAATGCCATATCCCAGAACAT-ATCGATGCCACTGCCATTTCCCAAACATGGA
1 ACATATCGATGCCAATGCCATGTCCCAG-ACATGGTC--TTACA-TGGGA--T--CACATATCGA
** * * * * **
93838439 T-TTACATGGGATCACATAT-CGATGCCAATGCCATGTCTCAGACATGGCCTTAC
58 TGCCA-AT--G--C-CATGTCCCA-GAC-ATG----GTCT--TACATGG-GAT-C
* *** * * *
93838492 ATGGGATCACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGA
1 A--------CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* * ** * * *
93838557 TGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
58 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
*
93838596 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
93838661 CCATGTCCCAGACATGGTCTTACATGGGATC
66 CCATGTCCCAGACATGGTCTTACATGGGATC
** *
93838692 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAAT
1 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAT
* ** *
93838756 GCCATGTCCCAGACATGGTCTTACACGAAATA
65 GCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * ** ** * * *
93838788 ATATATCAATGCTAATGCCATATCCCAGAACAT-ATCGATGCCACTGCCATTTCCCAAACATGGA
1 ACATATCGATGCCAATGCCATGTCCCAG-ACATGGTC--TTACA-TGGGA--T--CACATATCGA
** * * * * **
93838852 T-TTACATGGGATCACATAT-CGATGCCAATGCCATGTCTCAGACATGGCCTTAC
58 TGCCA-AT--G--C-CATGTCCCA-GAC-ATG----GTCT--TACATGG-GAT-C
* *** * * *
93838905 ATGGGATCACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGA
1 A--------CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* * ** * * *
93838970 TGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
58 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
93839009 ACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
93839074 CCATGTCCCAGACATGGTCTTACATGGGATC
66 CCATGTCCCAGACATGGTCTTACATGGGATC
** *
93839105 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAAT
1 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAT
* ** *
93839169 GCCATGTCCCAGACATGGTCTTACACGAAATA
65 GCCATGTCCCAGACATGGTCTTACATGGGATC
* * * * * ** ** * * *
93839201 ATATATCAATGCTAATGCCATATCCCAGAACAT-ATCGATGCCACTGCCATTTCCCAAACATGGA
1 ACATATCGATGCCAATGCCATGTCCCAG-ACATGGTC--TTACA-TGGGA--T--CACATATCGA
** * * * * **
93839265 T-TTACATGGGATCACATAT-CGATGCCAATGCCATGTCTCAGACATGGCCTTAC
58 TGCCA-AT--G--C-CATGTCCCA-GAC-ATG----GTCT--TACATGG-GAT-C
* *** * * *
93839318 ATGGGATCACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGA
1 A--------CATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGA
* * ** * * *
93839383 TGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
58 TGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
93839422 ACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
* *
93839487 CCATGTACTAGACATGGTCTTACATGGGATC
66 CCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93839518 ACATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAACACATATCGATGCCATTG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
*
93839583 CCATGTCCTAGACATGGTCTTACATGGGATC
66 CCATGTCCCAGACATGGTCTTACATGGGATC
* *
93839614 ACATATCGATGCCAATGTCATGTCCCAAACATGGTCTTACATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
93839657 TCATTACGAT
Statistics
Matches: 1344, Mismatches: 306, Indels: 224
0.72 0.16 0.12
Matches are distributed among these distances:
95 9 0.01
96 997 0.74
97 23 0.02
98 9 0.01
99 6 0.00
101 3 0.00
102 3 0.00
103 30 0.02
104 3 0.00
105 6 0.00
106 15 0.01
107 9 0.01
108 27 0.02
109 9 0.01
112 9 0.01
113 33 0.02
114 6 0.00
115 12 0.01
116 6 0.00
117 3 0.00
118 27 0.02
119 6 0.00
120 3 0.00
122 9 0.01
123 9 0.01
124 9 0.01
125 63 0.05
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (96 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAATG
CCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:93838458 original size:77 final size:77
Alignment explanation
Indices: 93838327--93838472 Score: 186
Period size: 77 Copynumber: 1.9 Consensus size: 77
93838317 ACAAGGGATC
* * *
93838327 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
93838392 CCATATCCCAGA
66 CCATATCCCAGA
* * * ** * *
93838404 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACACGAAATAACATATCAATGCCAAT
93838468 GCCAT
65 GCCAT
93838473 GTCTCAGACA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 57 0.98
78 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (77 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
CCATATCCCAGA
Found at i:93838484 original size:48 final size:48
Alignment explanation
Indices: 93838404--93838816 Score: 515
Period size: 48 Copynumber: 8.6 Consensus size: 48
93838394 ATATCCCAGA
* * *
93838404 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGG-TCTTACATGGGATC
* *
93838452 ACATATCGATGCCAATGCCATGTCTCAGACATGGCCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *** * *
93838500 ACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * ** * * *
93838548 ACATTTCGATGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
*
93838596 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
93838644 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
** *
93838692 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATC
1 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATC
* ** *
93838740 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93838788 ATATATCAATGCTAATGCCATATCCCAGA
1 ACATATCGATGCCAATGCCATGTCCCAGA
93838817 ACATATCGAT
Statistics
Matches: 314, Mismatches: 48, Indels: 6
0.85 0.13 0.02
Matches are distributed among these distances:
47 3 0.01
48 308 0.98
49 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:93838525 original size:173 final size:173
Alignment explanation
Indices: 93838231--93838572 Score: 454
Period size: 173 Copynumber: 2.0 Consensus size: 173
93838221 ACATGGGATC
*
93838231 ACATATCAATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAAT
1 ACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
*** * *
93838296 CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
66 CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACATGG
*
93838361 TCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAGA
131 TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
* * *
93838404 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCC-AA
1 ACATATCAATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATATCGATGCCAAA
* * *** *
93838467 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGATTTGAATGCAATGTCCCAGATAT
65 T-CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACAT
* ** * * *
93838532 GGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCC
129 GGTCTTACACGAAATAACATATCAATGCTAATGCCATATCC
93838573 TTGACATGGT
Statistics
Matches: 145, Mismatches: 22, Indels: 4
0.85 0.13 0.02
Matches are distributed among these distances:
172 3 0.02
173 141 0.97
174 1 0.01
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.27
Consensus pattern (173 bp):
ACATATCAATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACATGG
TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
Found at i:93838567 original size:221 final size:221
Alignment explanation
Indices: 93838182--93839085 Score: 675
Period size: 221 Copynumber: 4.0 Consensus size: 221
93838172 TACAGGGGAT
*
93838182 AACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCAATGCCAAT
1 AACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCAATGCCAAT
* * * *
93838247 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAATCCATGTCCCAGACATT
66 GCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAATCAATGTCCCAGACATG
* * *
93838312 TTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAAT
131 GTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACACGAAATAAC
*
93838377 ATATCAATGCTAATGCCATATCCCAG
196 ATATCAATGCCAATGCCATATCCCAG
* * *
93838403 AACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCCAA
1 AACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATATCAATGCCAA
* *** *
93838467 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGAT-TTGAATGCAATGTCCCAGATA
65 TGCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAAT-CAATGTCCCAGACA
* * * ** * * **
93838531 TGGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
129 TGGTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACACGAAATA
* *
93838596 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGGG
194 ACATATCAATGCCAATGCCA--T-------A---TC---C-C-AG
* *
93838641 ATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCA
1 A--ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCAATGCC-
*** * * *
93838706 AAT-CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCC-AATGCCATGTCCCAGA
63 AATGCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAAT-CAATGTCCCAGA
* ** * * * * * * *
93838769 CATGGTCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAGAACAT-ATCGATGC-C--
127 CATGGTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAG-ACATGGTC-TTACACGA
* ** * * * **
93838830 ACTGCCATTTCCCAA--AC-ATG-GAT-TTACATGGG
190 AATAACATAT--CAATGCCAATGCCATATCCCA---G
* * * * * ***
93838862 ATCACATATCGATGCCAATGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGATTTGA
1 A--ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCAATGCCA
* * * ** * * * **
93838927 ATGCAATGTCCCAGATATGGTCTTACATGGGATCACATTTCGATG-CTAATGCCATATCCTTGAC
64 ATGCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAAT-CAATGTCCCAGAC
* * * * * **
93838991 ATGGTTTTACAGGGGATAACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGAT
128 ATGGTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACACGAAAT
* * *
93839056 CACATATCGATGCCAATGCCATGTCCCAG
193 AACATATCAATGCCAATGCCATATCCCAG
93839085 A
1 A
93839086 CATGGTCTTA
Statistics
Matches: 538, Mismatches: 103, Indels: 82
0.74 0.14 0.11
Matches are distributed among these distances:
219 1 0.00
220 13 0.02
221 331 0.62
222 1 0.00
223 10 0.02
224 3 0.01
225 2 0.00
226 3 0.01
230 1 0.00
233 2 0.00
234 1 0.00
236 2 0.00
237 4 0.01
238 8 0.01
239 1 0.00
240 146 0.27
241 9 0.02
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.26
Consensus pattern (221 bp):
AACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCAATGCCAAT
GCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAATCAATGTCCCAGACATG
GTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACACGAAATAAC
ATATCAATGCCAATGCCATATCCCAG
Found at i:93838871 original size:77 final size:77
Alignment explanation
Indices: 93838740--93838885 Score: 186
Period size: 77 Copynumber: 1.9 Consensus size: 77
93838730 ACAAGGGATC
* * *
93838740 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
93838805 CCATATCCCAGA
66 CCATATCCCAGA
* * * ** * *
93838817 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACACGAAATAACATATCAATGCCAAT
93838881 GCCAT
65 GCCAT
93838886 GTCTCAGACA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 57 0.98
78 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (77 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
CCATATCCCAGA
Found at i:93838897 original size:48 final size:48
Alignment explanation
Indices: 93838817--93839229 Score: 506
Period size: 48 Copynumber: 8.6 Consensus size: 48
93838807 ATATCCCAGA
* * *
93838817 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGG-TCTTACATGGGATC
* *
93838865 ACATATCGATGCCAATGCCATGTCTCAGACATGGCCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *** * *
93838913 ACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * ** * * *
93838961 ACATTTCGATGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
93839009 ACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
93839057 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
** *
93839105 ACATATCGATGCCAAAT-CCATGTCCCAGACATTTTCTTACAAGGGATC
1 ACATATCGATGCC-AATGCCATGTCCCAGACATGGTCTTACATGGGATC
* ** *
93839153 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * *
93839201 ATATATCAATGCTAATGCCATATCCCAGA
1 ACATATCGATGCCAATGCCATGTCCCAGA
93839230 ACATATCGAT
Statistics
Matches: 312, Mismatches: 50, Indels: 6
0.85 0.14 0.02
Matches are distributed among these distances:
47 3 0.01
48 306 0.98
49 3 0.01
ACGTcount: A:0.30, C:0.25, G:0.18, T:0.27
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:93838938 original size:173 final size:173
Alignment explanation
Indices: 93838644--93838985 Score: 463
Period size: 173 Copynumber: 2.0 Consensus size: 173
93838634 ACACGGGATC
*
93838644 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
*** * *
93838709 CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
66 CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACATGG
*
93838774 TCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAGA
131 TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
* *
93838817 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCC-AA
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATATCGATGCCAAA
* * *** *
93838880 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGATTTGAATGCAATGTCCCAGATAT
65 T-CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACAT
* ** * * *
93838945 GGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCC
129 GGTCTTACACGAAATAACATATCAATGCTAATGCCATATCC
93838986 TTGACATGGT
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
172 3 0.02
173 142 0.97
174 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (173 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACATGG
TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
Found at i:93839284 original size:77 final size:77
Alignment explanation
Indices: 93839153--93839298 Score: 186
Period size: 77 Copynumber: 1.9 Consensus size: 77
93839143 ACAAGGGATC
* * *
93839153 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAATATATCAATGCTAATG
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
93839218 CCATATCCCAGA
66 CCATATCCCAGA
* * * ** * *
93839230 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCCAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACACGAAATAACATATCAATGCCAAT
93839294 GCCAT
65 GCCAT
93839299 GTCTCAGACA
Statistics
Matches: 58, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
77 57 0.98
78 1 0.02
ACGTcount: A:0.33, C:0.27, G:0.15, T:0.25
Consensus pattern (77 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGAAATAACATATCAATGCCAATG
CCATATCCCAGA
Found at i:93839310 original size:48 final size:48
Alignment explanation
Indices: 93839230--93839656 Score: 559
Period size: 48 Copynumber: 8.9 Consensus size: 48
93839220 ATATCCCAGA
* * *
93839230 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGG-TCTTACATGGGATC
* *
93839278 ACATATCGATGCCAATGCCATGTCTCAGACATGGCCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *** * *
93839326 ACAAATCGATTTGAATGCAATGTCCCAGATATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * * ** * * *
93839374 ACATTTCGATGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
93839422 ACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
93839470 ACATATCGATGCTAATGCCATGTACTAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* * *
93839518 ACATATCGATGCTAATGCCATGTCCCAGACATGGTCTTATATGGGAAC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
93839566 ACATATCGATGCCATTGCCATGTCCTAGACATGGTCTTACATGGGATC
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
* *
93839614 ACATATCGATGCCAATGTCATGTCCCAAACATGGTCTTACATG
1 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATG
93839657 TCATTACGAT
Statistics
Matches: 325, Mismatches: 53, Indels: 2
0.86 0.14 0.01
Matches are distributed among these distances:
48 325 1.00
ACGTcount: A:0.28, C:0.24, G:0.20, T:0.28
Consensus pattern (48 bp):
ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATC
Found at i:93839351 original size:173 final size:173
Alignment explanation
Indices: 93839057--93839398 Score: 463
Period size: 173 Copynumber: 2.0 Consensus size: 173
93839047 ACACGGGATC
*
93839057 ACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAAT
1 ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
*** * *
93839122 CCATGTCCCAGACATTTTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGG
66 CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACATGG
*
93839187 TCTTACACGAAATAATATATCAATGCTAATGCCATATCCCAGA
131 TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
* *
93839230 ACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCC-AA
1 ACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACATGGGATCACATATCGATGCCAAA
* * *** *
93839293 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGATTTGAATGCAATGTCCCAGATAT
65 T-CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACAT
* ** * * *
93839358 GGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCC
129 GGTCTTACACGAAATAACATATCAATGCTAATGCCATATCC
93839399 TTGACATGGT
Statistics
Matches: 146, Mismatches: 21, Indels: 4
0.85 0.12 0.02
Matches are distributed among these distances:
172 3 0.02
173 142 0.97
174 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (173 bp):
ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAAAT
CCATGTCCCAGACATGGCCTTACAAGGGATCACAAATCGATGCCAATGCAATGTCCCAGACATGG
TCTTACACGAAATAACATATCAATGCTAATGCCATATCCCAGA
Found at i:93839393 original size:221 final size:221
Alignment explanation
Indices: 93839008--93839654 Score: 652
Period size: 221 Copynumber: 2.8 Consensus size: 221
93838998 TACAGGGGAT
* *
93839008 AACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGCCAAT
1 AACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGCCAAT
* * * *
93839073 GCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGCCAAATCCATGTCCCAGACATT
66 GCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAATCAATGTCCCAGACATG
* * *
93839138 TTCTTACAAGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGAAATAAT
131 GTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACACGAAATAAC
*
93839203 ATATCAATGCTAATGCCATATCCCAG
196 ATATCAATGCCAATGCCATATCCCAG
* * *
93839229 AACATATCGATGCCACTGCCATTTCCCAAACATGGAT-TTACATGGGATCACATATCGATGCCAA
1 AACATATCGATGCCAATGCCATGTCCCAAACATGG-TCTTACACGGGATCACATATCGATGCCAA
* *** *
93839293 TGCCATGTCTCAGACATGGCCTTACATGGGATCACAAATCGAT-TTGAATGCAATGTCCCAGATA
65 TGCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAAT-CAATGTCCCAGACA
* * * ** * * **
93839357 TGGTCTTACATGGGATCACATTTCGATGCTAATGCCATATCCTTGACATGGTTTTACAGGGGATA
129 TGGTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACACGAAATA
* * *
93839422 ACATATCGATGCCAATGTCATGTCCCAGACATGGTCTTACACGGG
194 ACATATCAATGCC-A----ATG---C---CAT-ATC---C-C-AG
* * * * * *
93839467 ATCACATATCGATGCTAATGCCATGTACTAGACATGGTCTTACATGGGATCACATATCGATGCTA
1 A--ACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGCCA
* * * * * * *
93839532 ATGCCATGTCCCAGACATGGTCTTATATGGGAACACATATCGATGCC-ATTGCCATGTCCTAGAC
64 ATGCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAAT-CAATGTCCCAGAC
* * * *
93839596 ATGGTCTTACATGGGATCACATATCGATGCCAATGTCATGTCCCAAACATGGTCTTACA
128 ATGGTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACA
93839655 TGTCATTACG
Statistics
Matches: 347, Mismatches: 56, Indels: 27
0.81 0.13 0.06
Matches are distributed among these distances:
220 3 0.01
221 172 0.50
222 2 0.01
226 3 0.01
229 1 0.00
232 3 0.01
233 2 0.01
236 1 0.00
237 1 0.00
238 2 0.01
239 1 0.00
240 156 0.45
ACGTcount: A:0.29, C:0.25, G:0.19, T:0.27
Consensus pattern (221 bp):
AACATATCGATGCCAATGCCATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGCCAAT
GCCATGTCCCAGACATGGCCTTACATGGGATCACAAATCGATGCCAAATCAATGTCCCAGACATG
GTCTTACAAGGGATCACATATCGATGCCAATGCCATATCCCAGACATGGTCTTACACGAAATAAC
ATATCAATGCCAATGCCATATCCCAG
Found at i:93841302 original size:10 final size:10
Alignment explanation
Indices: 93841289--93841322 Score: 68
Period size: 10 Copynumber: 3.4 Consensus size: 10
93841279 AATCAAATAT
93841289 CAATATAAGC
1 CAATATAAGC
93841299 CAATATAAGC
1 CAATATAAGC
93841309 CAATATAAGC
1 CAATATAAGC
93841319 CAAT
1 CAAT
93841323 TTATATGGCT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 24 1.00
ACGTcount: A:0.50, C:0.21, G:0.09, T:0.21
Consensus pattern (10 bp):
CAATATAAGC
Found at i:93848730 original size:24 final size:24
Alignment explanation
Indices: 93848696--93848839 Score: 193
Period size: 24 Copynumber: 6.1 Consensus size: 24
93848686 CTTGCCTCTA
*
93848696 TTAATAACTGGGGCAAAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTT
* *
93848720 TTTATAACTGGGGCATAAACCC-T
1 TTAATAACTGGGGCATAAGCCCTT
* *
93848743 TAAATAACTGGGGCGTAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTT
*
93848767 TTGATAACTGGGGCATAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTT
* * *
93848791 TTGATAAGTGGGGCATAAG-CCGT
1 TTAATAACTGGGGCATAAGCCCTT
93848814 TTAATAACTGGGGCATAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTT
93848838 TT
1 TT
93848840 TCACTTCCTC
Statistics
Matches: 103, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
23 39 0.38
24 64 0.62
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (24 bp):
TTAATAACTGGGGCATAAGCCCTT
Found at i:93848780 original size:71 final size:71
Alignment explanation
Indices: 93848699--93848839 Score: 219
Period size: 71 Copynumber: 2.0 Consensus size: 71
93848689 GCCTCTATTA
* *
93848699 ATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAACCCTTAAATAACTGGGGCGTAAGCC
1 ATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAACCCTTAAATAACTGGGGCATAAGCC
93848764 CTTTTG
66 CTTTTG
* * * * *
93848770 ATAACTGGGGCATAAGCCCTTTTGATAAGTGGGGCATAAGCCGTTTAATAACTGGGGCATAAGCC
1 ATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAACCCTTAAATAACTGGGGCATAAGCC
93848835 CTTTT
66 CTTTT
93848840 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (71 bp):
ATAACTGGGGCAAAAGCCCTTTTGATAACTGGGGCATAAACCCTTAAATAACTGGGGCATAAGCC
CTTTTG
Found at i:93848838 original size:47 final size:48
Alignment explanation
Indices: 93848696--93848839 Score: 193
Period size: 47 Copynumber: 3.0 Consensus size: 48
93848686 CTTGCCTCTA
* * *
93848696 TTAATAACTGGGGCAAAAGCCCTTTTTATAACTGGGGCATAAACCC-T
1 TTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTT
* * *
93848743 TAAATAACTGGGGCGTAAGCCCTTTTGATAACTGGGGCATAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTT
* * *
93848791 TTGATAAGTGGGGCATAAG-CCGTTTAATAACTGGGGCATAAGCCCTT
1 TTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTT
93848838 TT
1 TT
93848840 TCACTTCCTC
Statistics
Matches: 85, Mismatches: 11, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
47 69 0.81
48 16 0.19
ACGTcount: A:0.28, C:0.19, G:0.24, T:0.28
Consensus pattern (48 bp):
TTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCCTT
Found at i:93848914 original size:20 final size:20
Alignment explanation
Indices: 93848889--93848949 Score: 104
Period size: 20 Copynumber: 3.0 Consensus size: 20
93848879 TTATGAATAC
93848889 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
93848909 ATCATGGGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
93848929 GTCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
93848949 A
1 A
93848950 CAATGTTTAT
Statistics
Matches: 37, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 37 1.00
ACGTcount: A:0.34, C:0.20, G:0.13, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:93855968 original size:24 final size:24
Alignment explanation
Indices: 93855935--93856081 Score: 208
Period size: 24 Copynumber: 6.2 Consensus size: 24
93855925 GGCCTTGCCT
* *
93855935 CTTTTAATAACTAGGGCAAAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
93855959 CTTTTTATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
93855983 C-TTTAATAACTGGGGCGTAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
* *
93856006 CTTTTGAGAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
93856030 CTTTTGATAACTGGGGCATAAGCC
1 CTTTTAATAACTGGGGCATAAGCC
*
93856054 C-TTTAATAACTGGGGCATAACCC
1 CTTTTAATAACTGGGGCATAAGCC
93856077 CTTTT
1 CTTTT
93856082 TCACTTCCTC
Statistics
Matches: 110, Mismatches: 11, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
23 42 0.38
24 68 0.62
ACGTcount: A:0.27, C:0.22, G:0.22, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTGGGGCATAAGCC
Found at i:93855992 original size:47 final size:47
Alignment explanation
Indices: 93855937--93856080 Score: 200
Period size: 47 Copynumber: 3.1 Consensus size: 47
93855927 CCTTGCCTCT
* * *
93855937 TTTAATAACTAGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* * *
93855984 TTTAATAACTGGGGCGTAAGCCCTTTTGAGAACTGGGGCATAAGCCC
1 TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
* *
93856031 TTTTGATAACTGGGGCATAAGCCC-TTTAATAACTGGGGCATAACCCC
1 -TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
93856078 TTT
1 TTT
93856081 TTCACTTCCT
Statistics
Matches: 86, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
46 3 0.03
47 62 0.72
48 21 0.24
ACGTcount: A:0.28, C:0.22, G:0.22, T:0.28
Consensus pattern (47 bp):
TTTAATAACTGGGGCATAAGCCCTTTTAATAACTGGGGCATAAGCCC
Found at i:93856023 original size:71 final size:71
Alignment explanation
Indices: 93855943--93856081 Score: 233
Period size: 71 Copynumber: 2.0 Consensus size: 71
93855933 CTCTTTTAAT
* * *
93855943 AACTAGGGCAAAAGCCCTTTTTATAACTGGGGCATAAGCCCTTTAATAACTGGGGCGTAAGCCCT
1 AACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAACCCCT
93856008 TTTGAG
66 TTTGAG
* *
93856014 AACTGGGGCATAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAACCCCT
1 AACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAACCCCT
93856079 TTT
66 TTT
93856082 TCACTTCCTC
Statistics
Matches: 63, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
71 63 1.00
ACGTcount: A:0.27, C:0.22, G:0.23, T:0.27
Consensus pattern (71 bp):
AACTAGGGCAAAAGCCCTTTTGATAACTGGGGCATAAGCCCTTTAATAACTGGGGCATAACCCCT
TTTGAG
Found at i:93856156 original size:20 final size:20
Alignment explanation
Indices: 93856131--93856197 Score: 89
Period size: 20 Copynumber: 3.4 Consensus size: 20
93856121 TTATGAATAC
93856131 ATCATGTGCATATCATACAT
1 ATCATGTGCATATCATACAT
*
93856151 ATCATGAGCATATCATACAT
1 ATCATGTGCATATCATACAT
* * *
93856171 GTCATGTACATATCATGCAT
1 ATCATGTGCATATCATACAT
*
93856191 ACCATGT
1 ATCATGT
93856198 TTATCAAAAT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 40 1.00
ACGTcount: A:0.34, C:0.21, G:0.12, T:0.33
Consensus pattern (20 bp):
ATCATGTGCATATCATACAT
Found at i:93856162 original size:11 final size:10
Alignment explanation
Indices: 93856139--93856196 Score: 59
Period size: 9 Copynumber: 5.9 Consensus size: 10
93856129 ACATCATGTG
93856139 CATATCAT-A
1 CATATCATGA
93856148 CATATCATGA
1 CATATCATGA
93856158 GCATATCAT-A
1 -CATATCATGA
*
93856168 CATGTCATGTA
1 CATATCATG-A
93856179 CATATCATG-
1 CATATCATGA
*
93856188 CATACCATG
1 CATATCATG
93856197 TTTATCAAAA
Statistics
Matches: 42, Mismatches: 3, Indels: 8
0.79 0.06 0.15
Matches are distributed among these distances:
9 23 0.55
10 2 0.05
11 17 0.40
ACGTcount: A:0.36, C:0.22, G:0.10, T:0.31
Consensus pattern (10 bp):
CATATCATGA
Found at i:93865789 original size:15 final size:15
Alignment explanation
Indices: 93865769--93865806 Score: 67
Period size: 15 Copynumber: 2.5 Consensus size: 15
93865759 AGATCATAAG
*
93865769 CAAACATATTGAAAT
1 CAAACATACTGAAAT
93865784 CAAACATACTGAAAT
1 CAAACATACTGAAAT
93865799 CAAACATA
1 CAAACATA
93865807 AAAACTTAGC
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
15 22 1.00
ACGTcount: A:0.55, C:0.18, G:0.05, T:0.21
Consensus pattern (15 bp):
CAAACATACTGAAAT
Found at i:93873336 original size:29 final size:28
Alignment explanation
Indices: 93873301--93873399 Score: 112
Period size: 29 Copynumber: 3.5 Consensus size: 28
93873291 AATGTGACTA
*
93873301 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATAT-AATGTGATTTG
* *
93873330 GGCCTAAGGGGCCATATACTGGTGATTTG
1 GGCCTAATGGGCCATATAAT-GTGATTTG
*
93873359 GGCCTAATGGGCCAT-TGAATATGA-TTG
1 GGCCTAATGGGCCATAT-AATGTGATTTG
*
93873386 GGCTTAATGGGCCA
1 GGCCTAATGGGCCA
93873400 GATACAAGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 6
0.84 0.08 0.08
Matches are distributed among these distances:
27 16 0.26
28 6 0.10
29 40 0.65
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.27
Consensus pattern (28 bp):
GGCCTAATGGGCCATATAATGTGATTTG
Found at i:93876483 original size:29 final size:29
Alignment explanation
Indices: 93876448--93876547 Score: 130
Period size: 29 Copynumber: 3.5 Consensus size: 29
93876438 AATGTGACTA
*
93876448 GGCCTAACGGGCCATATAAATGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
93876477 GGCCTAATGGGCCATATACAGGTGATTTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
* *
93876506 GGCCTAATGGGCCATATGAATATGA-TTG
1 GGCCTAATGGGCCATATAAATGTGATTTG
**
93876534 GGTTTAATGGGCCA
1 GGCCTAATGGGCCA
93876548 GATACAAGTA
Statistics
Matches: 62, Mismatches: 9, Indels: 1
0.86 0.12 0.01
Matches are distributed among these distances:
28 15 0.24
29 47 0.76
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.28
Consensus pattern (29 bp):
GGCCTAATGGGCCATATAAATGTGATTTG
Found at i:93878273 original size:28 final size:29
Alignment explanation
Indices: 93878232--93878344 Score: 133
Period size: 29 Copynumber: 4.0 Consensus size: 29
93878222 CCTATATCTA
* * *
93878232 GCCCATTAAGCCC-AATCATATTCATATG
1 GCCCGTTAGGCCCAAATCACATTCATATG
*
93878260 GCCCGTTAGGCCCAAATCACCTGT-ATATG
1 GCCCGTTAGGCCCAAATCACAT-TCATATG
* *
93878289 GCCCGTTAGGCCCAAATCACATTTATAAG
1 GCCCGTTAGGCCCAAATCACATTCATATG
*
93878318 GCCCGTTAGGCCC-AGTCACATTCATAT
1 GCCCGTTAGGCCCAAATCACATTCATAT
93878345 TCATGCTCAC
Statistics
Matches: 73, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
28 23 0.32
29 49 0.67
30 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (29 bp):
GCCCGTTAGGCCCAAATCACATTCATATG
Found at i:93882709 original size:29 final size:29
Alignment explanation
Indices: 93882652--93882753 Score: 127
Period size: 29 Copynumber: 3.6 Consensus size: 29
93882642 TACCTATATC
* *
93882652 TGGCCCATTAAGCCC-AATCATAT-TCATA
1 TGGCCCATTAGGCCCAAATCACATGT-ATA
* *
93882680 TGGCCTATTAGGCCCAAATCACCTGTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
93882709 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCCAAATCACATGTATA
*
93882738 TGGCCCGTTAGGCCCA
1 TGGCCCATTAGGCCCA
93882754 GTCATATTCA
Statistics
Matches: 64, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
28 13 0.20
29 50 0.78
30 1 0.02
ACGTcount: A:0.27, C:0.29, G:0.17, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATGTATA
Found at i:93882715 original size:57 final size:58
Alignment explanation
Indices: 93882643--93882753 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
93882633 AATTTCACAT
* * *
93882643 ACCTATATCTGGCCCATTAAGCCC-AATCATATTCATATGGCCTATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * * *
93882700 ACCTGTATATGGCCCATTAGGCCCAAATCACATTTATATGGCCCGTTAGGCCCA
1 ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCA
93882754 GTCATATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 21 0.46
58 25 0.54
ACGTcount: A:0.28, C:0.30, G:0.15, T:0.27
Consensus pattern (58 bp):
ACCTATATATGGCCCATTAAGCCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:93885076 original size:73 final size:71
Alignment explanation
Indices: 93884957--93885099 Score: 259
Period size: 73 Copynumber: 2.0 Consensus size: 71
93884947 GCATGGGTAA
*
93884957 TAAAATAATAGTGGTTAGTAGGAGGAGAAAGAGAAAAAGAAAAAAAAAATTAGCTAGGCTACTCC
1 TAAAATAATAGTGGTTAGTAGGAGGAGAAAGAGAAAAAG-AAAAAAAAATGAGCTAGGCTACTCC
93885022 TCCATTGC
65 T-CATTGC
93885030 TAAAATAATAGTGGTTAGTAGGAGGAGAAAGAGAAAAAGAAAAAAAAATGAGCTAGGCTACTCCT
1 TAAAATAATAGTGGTTAGTAGGAGGAGAAAGAGAAAAAGAAAAAAAAATGAGCTAGGCTACTCCT
93885095 CATTG
66 CATTG
93885100 TCGTGACTTG
Statistics
Matches: 69, Mismatches: 1, Indels: 2
0.96 0.01 0.03
Matches are distributed among these distances:
71 5 0.07
72 25 0.36
73 39 0.57
ACGTcount: A:0.47, C:0.10, G:0.23, T:0.20
Consensus pattern (71 bp):
TAAAATAATAGTGGTTAGTAGGAGGAGAAAGAGAAAAAGAAAAAAAAATGAGCTAGGCTACTCCT
CATTGC
Found at i:93886599 original size:40 final size:40
Alignment explanation
Indices: 93886359--93886584 Score: 348
Period size: 40 Copynumber: 5.7 Consensus size: 40
93886349 TTTCGGATGG
** * ** *
93886359 TAACCGGGCTAAGTCCTTAAGGCATTTGTGCTTGTGACTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
* * *
93886399 -ATTCCGGGCTAAG-CACGAAGGCATTTGTGCGAGTTACTA
1 TA-ACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
93886438 TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
93886478 TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
93886518 TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
1 TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
93886558 TAACCGGGCTAAGTCCCGAAGGCATTT
1 TAACCGGGCTAAGTCCCGAAGGCATTT
93886585 GAGCAAGTAG
Statistics
Matches: 173, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
39 31 0.18
40 142 0.82
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.26
Consensus pattern (40 bp):
TAACCGGGCTAAGTCCCGAAGGCATTTCTGCGAGTTACTA
Found at i:93889909 original size:120 final size:120
Alignment explanation
Indices: 93889709--93889947 Score: 397
Period size: 120 Copynumber: 2.0 Consensus size: 120
93889699 TTGCAAAAGA
* * * *
93889709 AAAACCATCGATTTAAGGTGTGTAAATAGCGAGATAATCCGAGTTGAGTCTACTGACTTGAATAG
1 AAAACCATCGATTTAAGGTGTGTAAATAACGAGATAATCCGAGTTGAGTCTACGGACTTAAAGAG
* *
93889774 GTTGCCAGCTATAATATCATCGATGTTGGCTCAGAAATATGTAAGAAAGGGGTGT
66 GTTGCCAGCTATAATATCATCAATGTTGGCCCAGAAATATGTAAGAAAGGGGTGT
* *
93889829 AAAACCATCGATTTGAGGTGTGTAAATAACGAGATAATCCGAGTTGAGTCTACGGACTTAAAGGG
1 AAAACCATCGATTTAAGGTGTGTAAATAACGAGATAATCCGAGTTGAGTCTACGGACTTAAAGAG
*
93889894 GTTGCCAGCTGTAATATCATCAATGTTGGCCCAGAAATATGTAAGAAAGGGGTG
66 GTTGCCAGCTATAATATCATCAATGTTGGCCCAGAAATATGTAAGAAAGGGGTG
93889948 CGAAGCATAC
Statistics
Matches: 110, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
120 110 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.27
Consensus pattern (120 bp):
AAAACCATCGATTTAAGGTGTGTAAATAACGAGATAATCCGAGTTGAGTCTACGGACTTAAAGAG
GTTGCCAGCTATAATATCATCAATGTTGGCCCAGAAATATGTAAGAAAGGGGTGT
Found at i:93891683 original size:164 final size:164
Alignment explanation
Indices: 93891412--93891743 Score: 592
Period size: 164 Copynumber: 2.0 Consensus size: 164
93891402 TTAGTGGCAG
*
93891412 AATTAAAGGCCAAACCATTGTTGATTCATCAAATTCGTGAAGCTCAGAAAGTCGATGATGAATTG
1 AATTAAAGGCCAAACCATTGTTGATTCATCAAATTCGTGAAGCTCAGAAAGTCGATGATGAACTG
*
93891477 GTTGCAAAATGGGCTGAATGTGTTCCGAATATGGAATCAGAGTTTCAAATTGATGATGACGATTG
66 GTTGCAAAACGGGCTGAATGTGTTCCGAATATGGAATCAGAGTTTCAAATTGATGATGACGATTG
*
93891542 TTTGAGGTTCAGAAGTCGGTTGTGTGTTCCAAGA
131 TTTGAGGTTCAGAAGTCAGTTGTGTGTTCCAAGA
*
93891576 AATTAAAGGCCAAACCATTGTTGATTCATCAAATTCGTGAAGCTTAGAAAGTCGATGATGAACTG
1 AATTAAAGGCCAAACCATTGTTGATTCATCAAATTCGTGAAGCTCAGAAAGTCGATGATGAACTG
* *
93891641 GTTGCAAAACGGGCTGAATGTGTTTCGAATATGGAATCAGAGTTTCAAATTGATTATGACGATTG
66 GTTGCAAAACGGGCTGAATGTGTTCCGAATATGGAATCAGAGTTTCAAATTGATGATGACGATTG
* *
93891706 TTTGAGGTTTAGAAGTCATTTGTGTGTTCCAAGA
131 TTTGAGGTTCAGAAGTCAGTTGTGTGTTCCAAGA
93891740 AATT
1 AATT
93891744 CAGAACTTAT
Statistics
Matches: 160, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
164 160 1.00
ACGTcount: A:0.32, C:0.12, G:0.24, T:0.32
Consensus pattern (164 bp):
AATTAAAGGCCAAACCATTGTTGATTCATCAAATTCGTGAAGCTCAGAAAGTCGATGATGAACTG
GTTGCAAAACGGGCTGAATGTGTTCCGAATATGGAATCAGAGTTTCAAATTGATGATGACGATTG
TTTGAGGTTCAGAAGTCAGTTGTGTGTTCCAAGA
Found at i:93894883 original size:40 final size:40
Alignment explanation
Indices: 93894778--93894939 Score: 220
Period size: 40 Copynumber: 4.1 Consensus size: 40
93894768 CGGATGATAA
** * *
93894778 CCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACTATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
93894818 TCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
93894857 CCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
93894897 CCGGGCTAAGTCCCGAAGGCATTTGAGCAAG-TAGCTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTA-CTATAT
93894937 CCG
1 CCG
93894940 TCTAAATTCT
Statistics
Matches: 108, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 36 0.33
40 72 0.67
ACGTcount: A:0.23, C:0.22, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:93900921 original size:42 final size:42
Alignment explanation
Indices: 93900859--93900948 Score: 112
Period size: 42 Copynumber: 2.1 Consensus size: 42
93900849 CGTTTACTTG
* *
93900859 ATGCCATTGTCCAACTATGGTCTTACACGAAGTCTCATATCA
1 ATGCCATTGTCCAACTATGGTCTTACACGAAATCACATATCA
* *
93900901 ATGCCA-TGTCCAGGAC-ATGGTCTTACATGAAATCACATATCG
1 ATGCCATTGTCCA--ACTATGGTCTTACACGAAATCACATATCA
93900943 ATGCCA
1 ATGCCA
93900949 ATCTCATATC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
41 6 0.14
42 34 0.81
43 2 0.05
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.28
Consensus pattern (42 bp):
ATGCCATTGTCCAACTATGGTCTTACACGAAATCACATATCA
Found at i:93900988 original size:48 final size:48
Alignment explanation
Indices: 93900899--93901350 Score: 573
Period size: 48 Copynumber: 9.6 Consensus size: 48
93900889 AGTCTCATAT
**
93900899 CAATGCCATGT-CCAGGACATGGTCTTACATGAAATCACATATCGATGC
1 CAATGCCATGTCCCA-GACATGGTCTTACATGGGATCACATATCGATGC
* * *
93900947 CAAT-CTCATATCTTC-GATATGGTCTTACATGGGATCACATATCGATGC
1 CAATGC-CATGTC-CCAGACATGGTCTTACATGGGATCACATATCGATGC
* * * *
93900995 CAATGCCATGTCCCAGATATGGTCTTACACGGGATCACATATCGGTGG
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
* * *
93901043 CAATACCATGTCCTAGACATGGTCTTACAT--G-----ATATCGATGA
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
* * * * *
93901084 TAGTGCCATGTCCCAAACATGGTCTTACATGGGATTACATATCGATTC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
*
93901132 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATTGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
*
93901180 CAATGCCATGTCCCAGACATGGTCTTACACGGGATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
* * * * *
93901228 CAATACCATGTCCCATATATGGTCTTACACGGGATCACATATTGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
* *
93901276 CAATGCCATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGC
1 CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
93901324 CAATGCCATGTCCCAGACATGGTCTTA
1 CAATGCCATGTCCCAGACATGGTCTTA
93901351 TATGTCATTA
Statistics
Matches: 352, Mismatches: 40, Indels: 24
0.85 0.10 0.06
Matches are distributed among these distances:
41 33 0.09
43 1 0.00
46 1 0.00
47 2 0.01
48 313 0.89
49 1 0.00
50 1 0.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (48 bp):
CAATGCCATGTCCCAGACATGGTCTTACATGGGATCACATATCGATGC
Found at i:93901214 original size:185 final size:189
Alignment explanation
Indices: 93900897--93901350 Score: 618
Period size: 185 Copynumber: 2.4 Consensus size: 189
93900887 GAAGTCTCAT
* ** *
93900897 ATCAATGCCATGT-CCAGGACATGGTCTTACATGAAATCACATATCGATGCCAAT-CTCATATCT
1 ATCAATGCCATGTCCCA-AACATGGTCTTACATGGGATCACATATCGATGCCAATGC-CATGTC-
* * *
93900960 TC-GATATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGATATGGTCTTACA
63 CCAGACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACA
* * * *
93901024 CGGGATCACATATCGGTGGCAATACCATGTCCTAGACATGGTCTTACA-TGAT-ATC-GA-TG
128 CGGGATCACATATCGATGCCAATACCATGTCCCAGACATGGTCTTACACGGATCA-CAGATTG
* * *
93901083 AT-AGTGCCATGTCCCAAACATGGTCTTACATGGGATTACATATCGATTCCAATGCCATGTCCCA
1 ATCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
*
93901147 GACATGGTCTTACATGGGATCACATATTGATGCCAATGCCATGTCCCAGACATGGTCTTACACGG
66 GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGG
* * *
93901212 GATCACATATCGATGCCAATACCATGTCCCATATATGGTCTTACACGGGATCACATATTG
131 GATCACATATCGATGCCAATACCATGTCCCAGACATGGTCTTACAC-GGATCACAGATTG
*
93901272 ATGCCAATGCCATGTCCCAAACATGGTCTTACACGGGATCACATATCGATGCCAATGCCATGTCC
1 AT--CAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCC
93901337 CAGACATGGTCTTA
64 CAGACATGGTCTTA
93901351 TATGTCATTA
Statistics
Matches: 235, Mismatches: 22, Indels: 16
0.86 0.08 0.06
Matches are distributed among these distances:
184 1 0.00
185 148 0.63
186 6 0.03
187 4 0.02
188 2 0.01
189 4 0.02
192 70 0.30
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (189 bp):
ATCAATGCCATGTCCCAAACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCA
GACATGGTCTTACATGGGATCACATATCGATGCCAATGCCATGTCCCAGACATGGTCTTACACGG
GATCACATATCGATGCCAATACCATGTCCCAGACATGGTCTTACACGGATCACAGATTG
Found at i:93909390 original size:30 final size:30
Alignment explanation
Indices: 93909356--93909416 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
93909346 TCCTTAACTC
93909356 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * *
93909386 AAACTTTTGCAAATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
93909416 A
1 A
93909417 GGATCGGGAA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.31, C:0.25, G:0.08, T:0.36
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:93912058 original size:42 final size:42
Alignment explanation
Indices: 93911942--93912059 Score: 125
Period size: 42 Copynumber: 2.8 Consensus size: 42
93911932 CCCATAGTAC
* * * *
93911942 CATATCAATGCCATATCCTAGATATGGTCTTACATGAAATAT
1 CATATCGATGCCATATCCCAGAAATGGTCTTATATGAAATAT
* * *
93911984 CATATCGATGCCATGTCCCTA-ACATGCTCTTATACT-AAATTAT
1 CATATCGATGCCATATCCC-AGAAATGGTCTTATA-TGAAA-TAT
93912027 -ATATCGATGCCATATCCCAGAAATGGTCTTATA
1 CATATCGATGCCATATCCCAGAAATGGTCTTATA
93912060 GGGAATCTCG
Statistics
Matches: 63, Mismatches: 9, Indels: 8
0.79 0.11 0.10
Matches are distributed among these distances:
41 1 0.02
42 57 0.90
43 5 0.08
ACGTcount: A:0.33, C:0.22, G:0.12, T:0.33
Consensus pattern (42 bp):
CATATCGATGCCATATCCCAGAAATGGTCTTATATGAAATAT
Found at i:93922156 original size:14 final size:13
Alignment explanation
Indices: 93922136--93922167 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
93922126 AATATGTGAC
93922136 TTGTTCTTAATTA
1 TTGTTCTTAATTA
93922149 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
93922163 TTGTT
1 TTGTT
93922168 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:93931161 original size:28 final size:28
Alignment explanation
Indices: 93931129--93931235 Score: 97
Period size: 28 Copynumber: 3.8 Consensus size: 28
93931119 GCAATCAAAT
* *
93931129 ATGGTACTTAATGTACGAAATATTTAGA
1 ATGGTACTTAGTGTACGAAATATTGAGA
* * *
93931157 ATGGTACTCAGCGTACGAAACATTGAGA
1 ATGGTACTTAGTGTACGAAATATTGAGA
* * *
93931185 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGTACTTAGTGTACGAAATATTGAGA
* ** * *
93931213 TTGACACTTAGTGTGCAAAATAT
1 ATGGTACTTAGTGTACGAAATAT
93931236 CGAATGATTC
Statistics
Matches: 64, Mismatches: 15, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
28 64 1.00
ACGTcount: A:0.35, C:0.12, G:0.23, T:0.30
Consensus pattern (28 bp):
ATGGTACTTAGTGTACGAAATATTGAGA
Found at i:93933513 original size:57 final size:57
Alignment explanation
Indices: 93933155--93933510 Score: 559
Period size: 57 Copynumber: 6.2 Consensus size: 57
93933145 AAGTGAACAT
* * *
93933155 AGGCACTATGTGTGTGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * *
93933212 AGGCACTGCGTGTGCGAGTTTCGTAACCGAGCACTGTGTGTACGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
93933269 AGGCACTGTGTGTGCGAGTTCCGTAACCAAGCACTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
93933326 AGGCACTGTGTGTGCGAGTTCTGTAACCGAGCACTGTGTGTACGAAAACGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
93933383 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCAGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
* * * *
93933440 AGGCACTGTGTGTGTGATTTTCGTAACCGAGCATTGTGTGTGCGAGATCGGTTGTTG
1 AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
*
93933497 AGGCACTGAGTGTG
1 AGGCACTGTGTGTG
93933511 TGAAATGAGA
Statistics
Matches: 273, Mismatches: 26, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 273 1.00
ACGTcount: A:0.18, C:0.18, G:0.35, T:0.29
Consensus pattern (57 bp):
AGGCACTGTGTGTGCGAGTTCCGTAACCGAGCACTGTGTGTGCGAGATCGGTTGTTG
Found at i:93938491 original size:28 final size:28
Alignment explanation
Indices: 93938451--93938529 Score: 104
Period size: 28 Copynumber: 2.8 Consensus size: 28
93938441 GCAATCAAAT
* * *
93938451 ATGGTACTCAGTGTACGAAATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
*
93938479 ATGGCACTTAGTGTGCGAGATATTGAGA
1 ATGGCACTTAGTGTGCGAAATATTGAGA
* *
93938507 ATGACACTTAGTGTGCAAAATAT
1 ATGGCACTTAGTGTGCGAAATAT
93938530 CGAATGATTC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 44 1.00
ACGTcount: A:0.34, C:0.11, G:0.25, T:0.29
Consensus pattern (28 bp):
ATGGCACTTAGTGTGCGAAATATTGAGA
Found at i:93938818 original size:22 final size:22
Alignment explanation
Indices: 93938790--93938835 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
93938780 TTCAATGCAT
93938790 TAAGTTGGCCAGGTATGTGATA
1 TAAGTTGGCCAGGTATGTGATA
93938812 TAAGTTGGCCAGGTATGTGATA
1 TAAGTTGGCCAGGTATGTGATA
93938834 TA
1 TA
93938836 TTCTTATGCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.28, C:0.09, G:0.30, T:0.33
Consensus pattern (22 bp):
TAAGTTGGCCAGGTATGTGATA
Found at i:93945363 original size:72 final size:72
Alignment explanation
Indices: 93945273--93945416 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
93945263 AGCAGACAAA
93945273 GCTTCTAGGATTGCATTGGACTTACTGGAAACTTAATAAACTCAAGCAAATGATTTACGTACGTA
1 GCTTCTAGGATTGCATTGGACTTACTGGAAACTTAATAAACTCAAGCAAATGATTTACGTACGTA
93945338 CGTACGT
66 CGTACGT
*
93945345 GCTTCTAGGGTTGCATTGGACTTACTGGAAACTTAATAAACTCAAGCAAATGATTTACGTACGTA
1 GCTTCTAGGATTGCATTGGACTTACTGGAAACTTAATAAACTCAAGCAAATGATTTACGTACGTA
93945410 CGTACGT
66 CGTACGT
93945417 ACATATGTAT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.31, C:0.18, G:0.20, T:0.31
Consensus pattern (72 bp):
GCTTCTAGGATTGCATTGGACTTACTGGAAACTTAATAAACTCAAGCAAATGATTTACGTACGTA
CGTACGT
Found at i:93945427 original size:4 final size:4
Alignment explanation
Indices: 93945420--93945449 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
93945410 CGTACGTACA
93945420 TATG TATG TATG TATG TATG TATG TATG TA
1 TATG TATG TATG TATG TATG TATG TATG TA
93945450 ACACTTGTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.27, C:0.00, G:0.23, T:0.50
Consensus pattern (4 bp):
TATG
Found at i:93949821 original size:22 final size:22
Alignment explanation
Indices: 93949795--93949842 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
93949785 AATTTTAATG
* *
93949795 TTTAATTTAGTTTTTGA-ATTTT
1 TTTAATTAAGTATTT-ATATTTT
93949817 TTTAATTAAGTATTTATATTTT
1 TTTAATTAAGTATTTATATTTT
93949839 TTTA
1 TTTA
93949843 TTAGAGCACC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
21 1 0.04
22 22 0.96
ACGTcount: A:0.27, C:0.00, G:0.06, T:0.67
Consensus pattern (22 bp):
TTTAATTAAGTATTTATATTTT
Found at i:93949988 original size:31 final size:29
Alignment explanation
Indices: 93949930--93950002 Score: 87
Period size: 31 Copynumber: 2.5 Consensus size: 29
93949920 CTTAAGTCTC
*
93949930 AAATTAAA-ATAAAATAAACTCAAATACT
1 AAATTAAATATTAAATAAACTCAAATACT
*
93949958 AAATTAAATATTAAATCCAAACTCATATACT
1 AAATTAAATATTAAAT--AAACTCAAATACT
93949989 AAA-TAATATATTAA
1 AAATTAA-ATATTAA
93950003 CCCTAAAAAT
Statistics
Matches: 39, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
28 8 0.21
29 6 0.15
30 3 0.08
31 22 0.56
ACGTcount: A:0.59, C:0.11, G:0.00, T:0.30
Consensus pattern (29 bp):
AAATTAAATATTAAATAAACTCAAATACT
Found at i:93955264 original size:19 final size:19
Alignment explanation
Indices: 93955240--93955330 Score: 152
Period size: 19 Copynumber: 4.9 Consensus size: 19
93955230 ATAATCTTCA
93955240 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
*
93955259 ATGATATGCAATCATAGAT
1 ATGATATGCAATCTTAGAT
93955278 ATGATAT--AATCTTAGAT
1 ATGATATGCAATCTTAGAT
93955295 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
93955313 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
93955331 AGATATGATT
Statistics
Matches: 67, Mismatches: 2, Indels: 6
0.89 0.03 0.08
Matches are distributed among these distances:
16 1 0.01
17 14 0.21
18 15 0.22
19 37 0.55
ACGTcount: A:0.38, C:0.10, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:93955309 original size:54 final size:53
Alignment explanation
Indices: 93955228--93955330 Score: 163
Period size: 54 Copynumber: 1.9 Consensus size: 53
93955218 TCATATGGAA
93955228 ATATAATCTTCAATGATATGCAATCTTAGATATGATATGCAATCATAGATATG
1 ATATAATCTTCAATGATATGCAATCTTAGATATGATATGCAATCATAGATATG
* *
93955281 ATATAATCTTAGATATGAT-TGCAATCTTAGATATGATATGCAATCTTAGA
1 ATATAATCTT-CA-ATGATATGCAATCTTAGATATGATATGCAATCATAGA
93955331 AGATATGATT
Statistics
Matches: 46, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
53 10 0.22
54 31 0.67
55 5 0.11
ACGTcount: A:0.39, C:0.11, G:0.14, T:0.37
Consensus pattern (53 bp):
ATATAATCTTCAATGATATGCAATCTTAGATATGATATGCAATCATAGATATG
Found at i:93955356 original size:22 final size:22
Alignment explanation
Indices: 93955240--93955353 Score: 87
Period size: 19 Copynumber: 5.8 Consensus size: 22
93955230 ATAATCTTCA
93955240 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
*
93955259 ATGATATGCAATC--A-TAGAT
1 ATGATATGCAATCTTAGAAGAT
93955278 ATGATAT--AATCTTAG---AT
1 ATGATATGCAATCTTAGAAGAT
93955295 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
93955313 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
93955335 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
93955354 GATTTAATTT
Statistics
Matches: 79, Mismatches: 2, Indels: 24
0.75 0.02 0.23
Matches are distributed among these distances:
16 1 0.01
17 11 0.14
18 13 0.16
19 34 0.43
22 8 0.10
23 12 0.15
ACGTcount: A:0.38, C:0.09, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:93955643 original size:18 final size:18
Alignment explanation
Indices: 93955620--93955655 Score: 56
Period size: 18 Copynumber: 2.0 Consensus size: 18
93955610 TGTTTCCCTG
93955620 ATTTTTTT-ATATATTTTA
1 ATTTTTTTAATA-ATTTTA
93955638 ATTTTTTTAATAATTTTA
1 ATTTTTTTAATAATTTTA
93955656 GTATCTTATC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 14 0.82
19 3 0.18
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (18 bp):
ATTTTTTTAATAATTTTA
Found at i:93956446 original size:11 final size:11
Alignment explanation
Indices: 93956430--93956474 Score: 56
Period size: 11 Copynumber: 4.0 Consensus size: 11
93956420 CCATTTCCTA
93956430 AATAAAATAAT
1 AATAAAATAAT
93956441 AATAAACAT-AT
1 AATAAA-ATAAT
*
93956452 AAGTAAAATATT
1 AA-TAAAATAAT
93956464 AATAAAATAAT
1 AATAAAATAAT
93956475 TTTTAACTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
11 20 0.69
12 9 0.31
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (11 bp):
AATAAAATAAT
Found at i:93957565 original size:18 final size:19
Alignment explanation
Indices: 93957538--93957574 Score: 58
Period size: 18 Copynumber: 2.0 Consensus size: 19
93957528 GGTCACTCTT
*
93957538 AAAACTCTAAA-CCCAATA
1 AAAACCCTAAATCCCAATA
93957556 AAAACCCTAAATCCCAATA
1 AAAACCCTAAATCCCAATA
93957575 CTAATAATCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 10 0.59
19 7 0.41
ACGTcount: A:0.54, C:0.30, G:0.00, T:0.16
Consensus pattern (19 bp):
AAAACCCTAAATCCCAATA
Found at i:93958010 original size:16 final size:16
Alignment explanation
Indices: 93957991--93958028 Score: 58
Period size: 16 Copynumber: 2.4 Consensus size: 16
93957981 AATATAATAT
93957991 ATTATTAATCAATAAA
1 ATTATTAATCAATAAA
* *
93958007 ATTATAAATCTATAAA
1 ATTATTAATCAATAAA
93958023 ATTATT
1 ATTATT
93958029 GAATATAATT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.53, C:0.05, G:0.00, T:0.42
Consensus pattern (16 bp):
ATTATTAATCAATAAA
Found at i:93959007 original size:22 final size:22
Alignment explanation
Indices: 93958981--93959023 Score: 68
Period size: 22 Copynumber: 2.0 Consensus size: 22
93958971 TTTTTTCCAT
*
93958981 TGTTGTTTTGCTGCTATTTTTA
1 TGTTGTTTTGCTGCCATTTTTA
*
93959003 TGTTGTTTTGTTGCCATTTTT
1 TGTTGTTTTGCTGCCATTTTT
93959024 TGCCATTTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.07, C:0.09, G:0.19, T:0.65
Consensus pattern (22 bp):
TGTTGTTTTGCTGCCATTTTTA
Found at i:93959253 original size:40 final size:40
Alignment explanation
Indices: 93959208--93959290 Score: 166
Period size: 40 Copynumber: 2.1 Consensus size: 40
93959198 TAGAAAATAA
93959208 TTATTTTAATATTTTTAGTGTATTTGATGTATTATATTTT
1 TTATTTTAATATTTTTAGTGTATTTGATGTATTATATTTT
93959248 TTATTTTAATATTTTTAGTGTATTTGATGTATTATATTTT
1 TTATTTTAATATTTTTAGTGTATTTGATGTATTATATTTT
93959288 TTA
1 TTA
93959291 AATTTATTTT
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 43 1.00
ACGTcount: A:0.25, C:0.00, G:0.10, T:0.65
Consensus pattern (40 bp):
TTATTTTAATATTTTTAGTGTATTTGATGTATTATATTTT
Found at i:93961636 original size:29 final size:28
Alignment explanation
Indices: 93961590--93961663 Score: 69
Period size: 29 Copynumber: 2.6 Consensus size: 28
93961580 GATAGTGGTT
*
93961590 TGTA-AAAATTAAATCAAATCAAAATATCA
1 TGTATAAAATTACA-CAAATCAAAAT-TCA
* *
93961619 TGTATAAAATTACACAAAATTAAAATTTA
1 TGTATAAAATTACAC-AAATCAAAATTCA
* *
93961648 TATATATAATTACACA
1 TGTATAAAATTACACA
93961664 TTATACCAAA
Statistics
Matches: 38, Mismatches: 5, Indels: 5
0.79 0.10 0.10
Matches are distributed among these distances:
28 1 0.03
29 20 0.53
30 17 0.45
ACGTcount: A:0.55, C:0.09, G:0.03, T:0.32
Consensus pattern (28 bp):
TGTATAAAATTACACAAATCAAAATTCA
Found at i:93962976 original size:42 final size:42
Alignment explanation
Indices: 93962925--93963127 Score: 284
Period size: 42 Copynumber: 4.8 Consensus size: 42
93962915 GTTTACAAAC
*
93962925 AAAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTT-AGAA
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAG-A
* *
93962967 AAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTGTA-A
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTT-AAGA
* *
93963009 AAAAATGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGA
* * *
93963051 GAAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGA
* *
93963093 GAAAACGCCGCTAAAGATCATGTTCTTTAGCGGCG
1 AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCG
93963128 TTTTTTTTCT
Statistics
Matches: 148, Mismatches: 10, Indels: 6
0.90 0.06 0.04
Matches are distributed among these distances:
41 1 0.01
42 146 0.99
44 1 0.01
ACGTcount: A:0.31, C:0.22, G:0.24, T:0.24
Consensus pattern (42 bp):
AAAAACGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGA
Found at i:93963163 original size:43 final size:42
Alignment explanation
Indices: 93962927--93963223 Score: 195
Period size: 42 Copynumber: 7.1 Consensus size: 42
93962917 TTACAAACAA
* * * * **** *
93962927 AAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAA
1 AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC
* * * * ** *
93962969 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGCTTGTAAAA
1 AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC
* * * * ****
93963011 AAATGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGGGA-
1 AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATT-TTTTAC
* * ****
93963053 AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAAGGGA-
1 AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATT-TTTTAC
* * * *
93963095 AAACGCCGCTAAAGATCATGTTCTTTAGCGGCGTTTTTTTTC
1 AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC
* *
93963137 TAATCGCCACTAAAGAACATGTTCTTTAGTGGC-ATTTTTTAC
1 -AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC
* * *
93963179 AAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTTTTATAC
1 AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC
93963221 AAA
1 AAA
93963224 AACGCCACTA
Statistics
Matches: 221, Mismatches: 30, Indels: 8
0.85 0.12 0.03
Matches are distributed among these distances:
41 29 0.13
42 163 0.74
43 29 0.13
ACGTcount: A:0.30, C:0.21, G:0.21, T:0.28
Consensus pattern (42 bp):
AAACGCCGCTAAAGAACATGTTCTTTAGTGGCGATTTTTTAC
Found at i:93963183 original size:126 final size:126
Alignment explanation
Indices: 93962926--93963214 Score: 341
Period size: 126 Copynumber: 2.3 Consensus size: 126
93962916 TTTACAAACA
* *
93962926 AAAACGCCGTTAAAGACCATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTT
1 AAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTT
* * *
93962991 CTTTAGCGGCGCTTGTAAAAAAATGCCGCTAAAGACCATGTTCTTTAGCGGCGCTTAAGGG
66 CTTTAGCGGCGCTTGTAAAAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAAGGG
**
93963052 AAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTA-AGGGAAAACGCCGCTAAAGATCATGT
1 AAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGA-AAAAAACGCCGCTAAAGATCATGT
* * ***** * ****
93963116 TCTTTAGCGGCGTTTTTTTTCTAATCGCCACTAAAGAACATGTTCTTTAGTGGC-ATT-TTTT
65 TCTTTAGCGGCGCTTGTAAAAAAAT-GCCACTAAAGAACATGTTCTTTAGCGGCGATTAAGGG
* *
93963177 ACAAACGCCGCAAAAGAACATGTTCTTTAGTGGCGCTT
1 A-AAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTT
93963215 TTATACAAAA
Statistics
Matches: 139, Mismatches: 21, Indels: 6
0.84 0.13 0.04
Matches are distributed among these distances:
125 2 0.01
126 112 0.81
127 25 0.18
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (126 bp):
AAAACGCCGCTAAAGAACATGTTCTTTAGCGGCGCTTAGAAAAAAACGCCGCTAAAGATCATGTT
CTTTAGCGGCGCTTGTAAAAAAATGCCACTAAAGAACATGTTCTTTAGCGGCGATTAAGGG
Found at i:93963607 original size:21 final size:21
Alignment explanation
Indices: 93963539--93963609 Score: 79
Period size: 21 Copynumber: 3.4 Consensus size: 21
93963529 TTTTGCTCTG
* *
93963539 CTCTGCTTCTCTTGCTGCAGC
1 CTCTGCTTCCCTCGCTGCAGC
* *
93963560 CTCCGCTTCCCTCGCTGCAGT
1 CTCTGCTTCCCTCGCTGCAGC
* * *
93963581 CGCTGCTTCCCTCGCTTCCGC
1 CTCTGCTTCCCTCGCTGCAGC
93963602 CTCTGCTT
1 CTCTGCTT
93963610 TAAGTTGTAG
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 40 1.00
ACGTcount: A:0.03, C:0.45, G:0.18, T:0.34
Consensus pattern (21 bp):
CTCTGCTTCCCTCGCTGCAGC
Found at i:93969082 original size:11 final size:9
Alignment explanation
Indices: 93969034--93969121 Score: 64
Period size: 9 Copynumber: 9.9 Consensus size: 9
93969024 AATTGCAATG
93969034 GTAAGTTAT
1 GTAAGTTAT
93969043 GTAAGTTAT
1 GTAAGTTAT
93969052 GTAAGTTAAAT
1 GTAAGTT--AT
93969063 GT-A-TTAT
1 GTAAGTTAT
93969070 GTAAGTTAAAT
1 GTAAGTT--AT
93969081 GTAAG-T-T
1 GTAAGTTAT
93969088 GTAAGTTAT
1 GTAAGTTAT
*
93969097 -TATGTATTAT
1 GTAAG--TTAT
93969107 GTAAG-T-T
1 GTAAGTTAT
93969114 GTAAGTTA
1 GTAAGTTA
93969122 AATGTATTGT
Statistics
Matches: 64, Mismatches: 2, Indels: 26
0.70 0.02 0.28
Matches are distributed among these distances:
7 16 0.25
8 7 0.11
9 21 0.33
10 6 0.09
11 14 0.22
ACGTcount: A:0.35, C:0.00, G:0.20, T:0.44
Consensus pattern (9 bp):
GTAAGTTAT
Found at i:93969240 original size:25 final size:25
Alignment explanation
Indices: 93969079--93969230 Score: 268
Period size: 25 Copynumber: 6.0 Consensus size: 25
93969069 TGTAAGTTAA
*
93969079 ATGTAAGTTGTAAGTTATTATGTATT
1 ATGTAAGTTGTAAGTTA-AATGTATT
93969105 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
*
93969130 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
93969155 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
*
93969180 GTGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
93969205 ATGTAAGTTGTAAGTTAAATGTATT
1 ATGTAAGTTGTAAGTTAAATGTATT
93969230 A
1 A
93969231 ATCAGGTTGT
Statistics
Matches: 121, Mismatches: 5, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
25 104 0.86
26 17 0.14
ACGTcount: A:0.34, C:0.00, G:0.21, T:0.45
Consensus pattern (25 bp):
ATGTAAGTTGTAAGTTAAATGTATT
Found at i:93969444 original size:11 final size:11
Alignment explanation
Indices: 93969428--93969467 Score: 64
Period size: 11 Copynumber: 3.7 Consensus size: 11
93969418 GATGATAATA
93969428 CATTAGTTACC
1 CATTAGTTACC
93969439 CATTAGTTACC
1 CATTAGTTACC
*
93969450 CACTAGTTACC
1 CATTAGTTACC
93969461 CA-TAGTT
1 CATTAGTT
93969468 TGAGATATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 1
0.93 0.03 0.03
Matches are distributed among these distances:
10 5 0.18
11 23 0.82
ACGTcount: A:0.28, C:0.28, G:0.10, T:0.35
Consensus pattern (11 bp):
CATTAGTTACC
Found at i:93970013 original size:14 final size:14
Alignment explanation
Indices: 93969994--93970023 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
93969984 CACGAACAGC
93969994 AAGATGATTAACTA
1 AAGATGATTAACTA
93970008 AAGATGATTAACTA
1 AAGATGATTAACTA
93970022 AA
1 AA
93970024 AACCTTTTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.53, C:0.07, G:0.13, T:0.27
Consensus pattern (14 bp):
AAGATGATTAACTA
Found at i:93970243 original size:17 final size:18
Alignment explanation
Indices: 93970207--93970256 Score: 59
Period size: 18 Copynumber: 2.8 Consensus size: 18
93970197 AATCAAAAAC
*
93970207 AAATTATTTCAGACTCAA
1 AAATTATTTCAGAATCAA
93970225 AAATTATTTCA-AATCAA
1 AAATTATTTCAGAATCAA
93970242 AAGCA-TATTTCAGAA
1 AA--ATTATTTCAGAA
93970257 CATAACAACA
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
17 7 0.25
18 18 0.64
19 3 0.11
ACGTcount: A:0.48, C:0.14, G:0.06, T:0.32
Consensus pattern (18 bp):
AAATTATTTCAGAATCAA
Found at i:93970275 original size:71 final size:71
Alignment explanation
Indices: 93970159--93970501 Score: 643
Period size: 71 Copynumber: 4.8 Consensus size: 71
93970149 CCAGATCCAG
*
93970159 ATTTCAGAA-CCAAAGCATAATTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTC
1 ATTTCA-AATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTC
*
93970223 AAAAATT
65 AGAAATT
*
93970230 ATTTCAAATCAAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
93970295 GAAATT
66 GAAATT
93970301 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
93970366 GAAATT
66 GAAATT
93970372 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
93970437 GAAATT
66 GAAATT
93970443 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
1 ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCA
93970502 AATCCACTCA
Statistics
Matches: 267, Mismatches: 4, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
70 2 0.01
71 265 0.99
ACGTcount: A:0.50, C:0.18, G:0.05, T:0.26
Consensus pattern (71 bp):
ATTTCAAATCCAAAGCATATTTCAGAACATAACAACATAATCAAAAACAAATTATTTCAGACTCA
GAAATT
Found at i:93970836 original size:22 final size:22
Alignment explanation
Indices: 93970808--93970854 Score: 85
Period size: 22 Copynumber: 2.1 Consensus size: 22
93970798 GTGGCTGTAA
*
93970808 TAACAGAAACGCCTTACCTATT
1 TAACAGAAACGCCTTACATATT
93970830 TAACAGAAACGCCTTACATATT
1 TAACAGAAACGCCTTACATATT
93970852 TAA
1 TAA
93970855 TCGGATTAGT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.40, C:0.23, G:0.09, T:0.28
Consensus pattern (22 bp):
TAACAGAAACGCCTTACATATT
Found at i:93972030 original size:14 final size:14
Alignment explanation
Indices: 93972011--93972081 Score: 56
Period size: 14 Copynumber: 5.0 Consensus size: 14
93972001 ACCCCAGACT
93972011 CCTAAACCTTAAAC
1 CCTAAACCTTAAAC
*
93972025 CCTAAACACCCTAATAC
1 CCT-AA-ACCTTAA-AC
93972042 CCT-AACCTTAAA-
1 CCTAAACCTTAAAC
* * *
93972054 CCTACATCGTAAAC
1 CCTAAACCTTAAAC
*
93972068 CCTAAACTTTAAAC
1 CCTAAACCTTAAAC
93972082 TTTACACTGT
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
12 3 0.07
13 7 0.16
14 19 0.44
15 3 0.07
16 6 0.14
17 5 0.12
ACGTcount: A:0.41, C:0.35, G:0.01, T:0.23
Consensus pattern (14 bp):
CCTAAACCTTAAAC
Found at i:93972516 original size:113 final size:115
Alignment explanation
Indices: 93972318--93972523 Score: 290
Period size: 113 Copynumber: 1.8 Consensus size: 115
93972308 ATCAACAAAT
* * * *
93972318 CGCCGCTAATACTATGCTTTAGCGGCGTTTTACCGAAATCGCCACTAAATCAAGTATACATCAAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
*
93972383 ACCAAAACGATGCGTTTTGGTTCAGATACTTGGTGGCGCTTTTATCCAAG
66 ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGGCGCTTTTATCCAAG
* * * *
93972433 CGCCGCTAATACTATGCTTTAACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATACATCGAG
1 CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
* **
93972496 GCCAAAATTATGCGTTTTGGTTAAGATA
66 ACCAAAACGATGCGTTTTGGTTAAGATA
93972524 TTTTGCTGCT
Statistics
Matches: 79, Mismatches: 12, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
113 48 0.61
114 1 0.01
115 30 0.38
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30
Consensus pattern (115 bp):
CGCCGCTAATACTATGCTTTAACGGCGTTTCACCGAAAGCGCCACTAAATCAACTATACATCAAG
ACCAAAACGATGCGTTTTGGTTAAGATACTTGGTGGCGCTTTTATCCAAG
Found at i:93972693 original size:208 final size:209
Alignment explanation
Indices: 93972334--93972737 Score: 616
Period size: 208 Copynumber: 1.9 Consensus size: 209
93972324 TAATACTATG
* *
93972334 CTTTAGCGGCGTTTTACCGAAATCGCCACTAAATCAAGTATACATCAAGACCAAAACGATGCGTT
1 CTTTAGCGGCGGTTTACCGAAAGCGCCACTAAATCAAGTATACATCAAGACCAAAACGATGCGTT
* * ** *
93972399 TTGGTTCAGATACTTGGTGGCGCTTTTATCCAAGCGCCGCTAATACTATGCTTTAACGGCGTTTC
66 TTGGTTAAGATACTTGGCGGCGCTGCTATCAAAGCGCCGCTAATACTATGCTTTAACGGCGTTTC
93972464 ACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTTG
131 ACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTTG
93972529 CTGCTATTAATATT
196 CTGCTATTAATATT
* * ** * *
93972543 CTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTA-TATACATTAAGATCAAAAC-ACTGCGT
1 CTTTAGCGGCGGTTTACCGAAAGCGCCACTAAATCAAGTATACATCAAGACCAAAACGA-TGCGT
* * * *
93972606 TTTTGTTAAGATATTTTGCGGCGCTAGCTA-CAAATCGCCGCTAATACTATGCTTTAACGGCGTT
65 TTTGGTTAAGATACTTGGCGGCGCT-GCTATCAAAGCGCCGCTAATACTATGCTTTAACGGCGTT
93972670 TCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTT
129 TCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTT
93972735 TGC
194 TGC
93972738 GGCGCTAGCT
Statistics
Matches: 176, Mismatches: 17, Indels: 5
0.89 0.09 0.03
Matches are distributed among these distances:
207 1 0.01
208 142 0.81
209 33 0.19
ACGTcount: A:0.28, C:0.21, G:0.18, T:0.33
Consensus pattern (209 bp):
CTTTAGCGGCGGTTTACCGAAAGCGCCACTAAATCAAGTATACATCAAGACCAAAACGATGCGTT
TTGGTTAAGATACTTGGCGGCGCTGCTATCAAAGCGCCGCTAATACTATGCTTTAACGGCGTTTC
ACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTTG
CTGCTATTAATATT
Found at i:93972846 original size:321 final size:323
Alignment explanation
Indices: 93972239--93973192 Score: 1121
Period size: 321 Copynumber: 2.9 Consensus size: 323
93972229 ACTTTCAACA
* * * * * * ** *
93972239 AAGCGACACTAATTTTAGTATAAATTAAGACCAAAACGTTGCG-TTTTGTTTATGGTAAGTCGCG
1 AAGCGCCACTAATTTTA-TATACATTAAGATCAAAACGCTGCGTTTTTG-TTAAGATATTTTGCG
* * * * *
93972303 GCGCTATCAACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTTACCGA-AATCGCCACTAAA
64 GCGCTAGCTACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACC-ATAAGCGCCACTAAT
* * * * * *
93972367 TCAAGTATACATCAAGACCAAAACGATGCGTTTTGGTTCAGATACTTGGTGGCGCTTTTATCCAA
128 TCTAGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATACTTTGCGGCGCTTCTA-CAAA
93972432 GCGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGG
192 GCGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGG
93972497 CCAAAATTATGCGTTTTGGTTAAGATATTTTGCT-GCTATTAATATTCTTTAGCGGCGGTTTACC
257 CCAAAATTATGCGTTTTGGTTAAGATATTTTGCTCGCTATTAATATTCTTTAGCGGCGGTTTACC
93972561 GT
322 GT
*
93972563 AAGCGCCACTAATTTTATATACATTAAGATCAAAACACTGCGTTTTTGTTAAGATATTTTGCGGC
1 AAGCGCCACTAATTTTATATACATTAAGATCAAAACGCTGCGTTTTTGTTAAGATATTTTGCGGC
*
93972628 GCTAGCTACAAATCGCCGCTAATACTATGCTTTAACGGCGTTTCA-C-TAAGCGCCACTAATTCT
66 GCTAGCTACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACCATAAGCGCCACTAATTCT
* * * ** * * *
93972691 ACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAATCG
131 AGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATACTTTGCGGCGCT-TCTACAAAGCG
93972756 CCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGCCA
195 CCGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGCCA
93972821 AAATTATGCGTTTTGGTTAAGATATTTTGCGGCGCTTCTCACAAAGCGCCGCTATTAATATTCTT
260 AAATTATGCGTTTTGGTTAAGATATTTT-----G---CT----------CGCTATTAATATTCTT
93972886 TAGCGGCGGTTTACCGT
307 TAGCGGCGGTTTACCGT
*
93972903 AAGCGCCACTAATTTTATATACATTAAGATCAAAACGCTGCGTTTTTGTTAAGATATTTTGTGGC
1 AAGCGCCACTAATTTTATATACATTAAGATCAAAACGCTGCGTTTTTGTTAAGATATTTTGCGGC
* * * * *
93972968 GCTAGCTACAAATCACCGCTAATACTATTCTTTAGCGGCGTTTGACCATATGCGCCACTAGTTCT
66 GCTAGCTACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACCATAAGCGCCACTAATTCT
* * * * * * * *
93973033 AGTATAAATCAAGACCAAAACGATGTGTTTCGCTTAAGATAGTTTGCGGCGCTTCCATAAAGCGT
131 AGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATACTTTGCGGCGCTTCTACAAAGCGC
* * * * ** * * *
93973098 CGCTATTACTGTACTTTAACGGCGTTTTC-CTATAAACGCCACTAATTCTAAGATACCTCAAGAC
196 CGCTAATACTATGCTTTAACGGCG-TTTCAC--TAAGCGCCACTAATTCTACTATACATCGAGGC
* * *
93973162 C-AAACTCTGCGTTTTGGTTAAGCTATTTTGC
258 CAAAATTATGCGTTTTGGTTAAGATATTTTGC
93973193 GGCGTTTCCA
Statistics
Matches: 538, Mismatches: 65, Indels: 44
0.83 0.10 0.07
Matches are distributed among these distances:
321 155 0.29
322 3 0.01
323 74 0.14
324 21 0.04
326 1 0.00
329 2 0.00
334 1 0.00
337 1 0.00
340 136 0.25
341 30 0.06
342 87 0.16
343 27 0.05
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (323 bp):
AAGCGCCACTAATTTTATATACATTAAGATCAAAACGCTGCGTTTTTGTTAAGATATTTTGCGGC
GCTAGCTACAAATCGCCGCTAATACTATGCTTTAGCGGCGTTTCACCATAAGCGCCACTAATTCT
AGTATACATCAAGACCAAAACGATGCGTTTTGGTTAAGATACTTTGCGGCGCTTCTACAAAGCGC
CGCTAATACTATGCTTTAACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAA
AATTATGCGTTTTGGTTAAGATATTTTGCTCGCTATTAATATTCTTTAGCGGCGGTTTACCGT
Found at i:93972969 original size:114 final size:112
Alignment explanation
Indices: 93972531--93973310 Score: 717
Period size: 113 Copynumber: 6.9 Consensus size: 112
93972521 ATATTTTGCT
* * * *
93972531 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTACTATTCTTTAACGGC-GTTT-CCGTAAGCGCCACTAATTTTATATACATCAAGACCAA
* * *
93972596 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCC
64 AACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAAGCGCC
* * * * *
93972645 GCTAATACTATGCTTTAACGGCGTTTCAC-TAAGCGCCACTAATTCTACTATACATCGAGGCCAA
1 GCTATTACTATTCTTTAACGGCGTTTC-CGTAAGCGCCACTAATTTTA-TATACATCAAGACCAA
* * *
93972709 AATTATGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCC
64 AACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAAGCGCC
* * * * *
93972758 GCTAATACTATGCTTTAACGGCGTTTCAC-TAAGCGCCACTAATTCTACTATACATCGAGGCCAA
1 GCTATTACTATTCTTTAACGGCGTTTC-CGTAAGCGCCACTAATTTTA-TATACATCAAGACCAA
* * *
93972822 AATTATGCGTTTTGGTTAAGATATTTTGCGGCGCT-TCTCACAAAGCGCC
64 AACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCT-ACAAAGCGCC
* * * *
93972871 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTACTATTCTTTAACGGC-GTTT-CCGTAAGCGCCACTAATTTTATATACATCAAGACCAA
* * * * *
93972936 AACGCTGCGTTTTTGTTAAGATATTTTGTGGCGCTAGCTACAAATCACC
64 AACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAAGCGCC
* * * * * * *
93972985 GCTAATACTATTCTTTAGCGGCGTTTGACCATATGCGCCACTAGTTCTAGTATAAATCAAGACCA
1 GCTATTACTATTCTTTAACGGCGTTT--CCGTAAGCGCCACTAATTTTA-TATACATCAAGACCA
** * * * * * * * *
93973050 AAACGATGTGTTTCGCTTAAGATAGTTTGCGGCGCT-TCCATAAAGCGTC
63 AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAAGCGCC
* * * * * * *
93973099 GCTATTACTGTACTTTAACGGCGTTTTCCTATAAACGCCACTAATTCTAAGATACCTCAAGACC-
1 GCTATTACTATTCTTTAACGGCG-TTTCC-GTAAGCGCCACTAATT-TTATATACATCAAGACCA
* ** * *
93973163 AAACTCTGCGTTTTGGTTAAGCTATTTTGCGGCG-TTTCCAGAAAGCGCC
63 AAACTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAAGCGCC
* * * * * * *
93973212 GCTATTACTGTCCTTTAATGGCGTTTCGCGTAAACGCCACTACTTTTAAGATACATCAAGACGAA
1 GCTATTACTATTCTTTAACGGCGTTTC-CGTAAGCGCCACTAATTTT-ATATACATCAAGACCAA
* * * *
93973277 AACACAGCGTTTTGGTTAAGAGATTTCGCGGCGC
64 AACTCTGCGTTTTGGTTAAGATATTTTGCGGCGC
93973311 ATTGTGGTAA
Statistics
Matches: 562, Mismatches: 87, Indels: 34
0.82 0.13 0.05
Matches are distributed among these distances:
111 1 0.00
112 52 0.09
113 283 0.50
114 161 0.29
115 65 0.12
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (112 bp):
GCTATTACTATTCTTTAACGGCGTTTCCGTAAGCGCCACTAATTTTATATACATCAAGACCAAAA
CTCTGCGTTTTGGTTAAGATATTTTGCGGCGCTAGCTACAAAGCGCC
Found at i:93973252 original size:340 final size:340
Alignment explanation
Indices: 93972531--93973310 Score: 971
Period size: 340 Copynumber: 2.3 Consensus size: 340
93972521 ATATTTTGCT
* *
93972531 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTAATATCCTTTAACGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
*
93972596 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTT
66 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCACCGCTAATACTATGCTTT
* * * ** * *
93972661 AACGGCGTTTCACTAAGCGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTT
131 AACGGCGTTTCACTAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGCTT
* * * * *
93972726 AAGATATTTTGCGGCGCTAGCTACAAATCGCCGCTAATACTATGCTTTAACGGCGTTTCACTAAG
196 AAGATAGTTTGCGGCGCTAGCCACAAAGCGCCGCTAATACTATACTTTAACGGCGTTTCACTAAA
** * * *
93972791 CGCCACTAATTCTACTATACATCGAGGCCAAAATTATGCGTTTTGGTTAAGATATTTTGCGGCGC
261 CGCCACTAATTCTAAGATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGCGGCGC
93972856 TTCTCACAAAGCGCC
326 TTCTCACAAAGCGCC
* *
93972871 GCTATTAATATTCTTTAGCGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
1 GCTATTAATATCCTTTAACGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
* * *
93972936 AACGCTGCGTTTTTGTTAAGATATTTTGTGGCGCTAGCTACAAATCACCGCTAATACTATTCTTT
66 AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCACCGCTAATACTATGCTTT
* * * * * *
93973001 AGCGGCGTTTGACCATATGCGCCACTAGTTCTAGTATAAATCAAGACCAAAACGATGTGTTTCGC
131 AACGGCGTTTCA-C-TAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGC
* * * * *
93973066 TTAAGATAGTTTGCGGCGCT-TCCATAAAGCGTCGCTATTACTGTACTTTAACGGCGTTTTC-CT
194 TTAAGATAGTTTGCGGCGCTAGCCACAAAGCGCCGCTAATACTATACTTTAACGGCG-TTTCAC-
* * *
93973129 ATAAACGCCACTAATTCTAAGATACCTCAAGACC-AAACTCTGCGTTTTGGTTAAGCTATTTTGC
257 -TAAACGCCACTAATTCTAAGATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGC
* *
93973193 GGCGTTTC-CAGAAAGCGCC
321 GGCGCTTCTCACAAAGCGCC
* * * * * * *
93973212 GCTATTACTGTCCTTTAATGGC-GTTT-CGCGTAAACGCCACTACTTTTAAGATACATCAAGA-C
1 GCTATTAATATCCTTTAACGGCGGTTTAC-CGTAAGCGCCACTAATTTT-ATATACATTAAGATC
* * * *
93973274 GAAAACACAGCGTTTTGGTTAAGAGATTTCGCGGCGC
64 -AAAACACTGCGTTTTTGTTAAGATATTTTGCGGCGC
93973311 ATTGTGGTAA
Statistics
Matches: 380, Mismatches: 52, Indels: 15
0.85 0.12 0.03
Matches are distributed among these distances:
339 1 0.00
340 158 0.42
341 98 0.26
342 96 0.25
343 27 0.07
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32
Consensus pattern (340 bp):
GCTATTAATATCCTTTAACGGCGGTTTACCGTAAGCGCCACTAATTTTATATACATTAAGATCAA
AACACTGCGTTTTTGTTAAGATATTTTGCGGCGCTAGCTACAAATCACCGCTAATACTATGCTTT
AACGGCGTTTCACTAAGCGCCACTAATTCTACTATAAATCAAGACCAAAACGATGCGTTTCGCTT
AAGATAGTTTGCGGCGCTAGCCACAAAGCGCCGCTAATACTATACTTTAACGGCGTTTCACTAAA
CGCCACTAATTCTAAGATACATCAAGACCAAAACTATGCGTTTTGGTTAAGATATTTTGCGGCGC
TTCTCACAAAGCGCC
Found at i:93974908 original size:28 final size:30
Alignment explanation
Indices: 93974847--93974907 Score: 90
Period size: 29 Copynumber: 2.1 Consensus size: 30
93974837 AGTCTATATC
93974847 TTTATAATTTTTAAAGAATTAAATTAAATT
1 TTTATAATTTTTAAAGAATTAAATTAAATT
*
93974877 TTTATCATTTTT-AAGAA-TAAATTATAATT
1 TTTATAATTTTTAAAGAATTAAATTA-AATT
93974906 TT
1 TT
93974908 ACTATTACTA
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
28 7 0.24
29 11 0.38
30 11 0.38
ACGTcount: A:0.43, C:0.02, G:0.03, T:0.52
Consensus pattern (30 bp):
TTTATAATTTTTAAAGAATTAAATTAAATT
Found at i:93975593 original size:4 final size:4
Alignment explanation
Indices: 93975584--93975612 Score: 58
Period size: 4 Copynumber: 7.2 Consensus size: 4
93975574 GTCTTATATT
93975584 TACA TACA TACA TACA TACA TACA TACA T
1 TACA TACA TACA TACA TACA TACA TACA T
93975613 TGAAAGCTAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 25 1.00
ACGTcount: A:0.48, C:0.24, G:0.00, T:0.28
Consensus pattern (4 bp):
TACA
Found at i:94001863 original size:46 final size:47
Alignment explanation
Indices: 94001786--94001879 Score: 163
Period size: 46 Copynumber: 2.0 Consensus size: 47
94001776 TCTAGCCTAA
94001786 GAATAATAGGGTTTTGTTTTAATTAACTAATTATCTAAACTAAGAAT
1 GAATAATAGGGTTTTGTTTTAATTAACTAATTATCTAAACTAAGAAT
* *
94001833 GAATAATGGGGTTTT-TTTTAATTAACTAATTATCTAGACTAAGAAT
1 GAATAATAGGGTTTTGTTTTAATTAACTAATTATCTAAACTAAGAAT
94001879 G
1 G
94001880 CACAGAAAAA
Statistics
Matches: 45, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
46 31 0.69
47 14 0.31
ACGTcount: A:0.38, C:0.06, G:0.15, T:0.40
Consensus pattern (47 bp):
GAATAATAGGGTTTTGTTTTAATTAACTAATTATCTAAACTAAGAAT
Found at i:94016673 original size:48 final size:48
Alignment explanation
Indices: 94016605--94016741 Score: 220
Period size: 48 Copynumber: 2.9 Consensus size: 48
94016595 CAAGATAAAT
* * *
94016605 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
*
94016653 ATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
* *
94016701 ATATGTATATGTGGTAAAGCCGAATGACGAATGTGAAATAT
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATAT
94016742 GTTTGAGTTT
Statistics
Matches: 82, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
48 82 1.00
ACGTcount: A:0.34, C:0.07, G:0.28, T:0.32
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTG
Found at i:94016959 original size:48 final size:48
Alignment explanation
Indices: 94016891--94017023 Score: 203
Period size: 48 Copynumber: 2.8 Consensus size: 48
94016881 CAAGATAAAT
* * * * *
94016891 ATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGTG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
* *
94016939 ATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAAATATGTATGAG
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
94016987 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
1 ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAA
94017024 TGTTGTAACA
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 77 1.00
ACGTcount: A:0.35, C:0.07, G:0.28, T:0.31
Consensus pattern (48 bp):
ATATGTATATGTGGTAAAGCCGAATGGCTAATGTGAAATATATATGAG
Found at i:94016974 original size:286 final size:286
Alignment explanation
Indices: 94016457--94017023 Score: 1071
Period size: 286 Copynumber: 2.0 Consensus size: 286
94016447 GGAAATTGAT
94016457 TTTGAGTTTTGTAGCTCCAGTTATAAATAATTTAGTAACTATTGCTCAAGAAAACAGCTTGTGGT
1 TTTGAGTTTTGTAGCTCCAGTTATAAATAATTTAGTAACTATTGCTCAAGAAAACAGCTTGTGGT
94016522 GAATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAA
66 GAATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAA
94016587 TTGATGTACAAGATAAATATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGT
131 TTGATGTACAAGATAAATATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGT
* * * *
94016652 GATATGTGTATGTGGTAAAGCCGAATGGCTAATGTGAAATATATGTGTGATATGTATATGTGGTA
196 GATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAAATATATATGAGATATGTATATGTGGTA
94016717 AAGCCGAATGACGAATGTGAAATATG
261 AAGCCGAATGACGAATGTGAAATATG
94016743 TTTGAGTTTTGTAGCTCCAGTTATAAATAATTTAGTAACTATTGCTCAAGAAAACAGCTTGTGGT
1 TTTGAGTTTTGTAGCTCCAGTTATAAATAATTTAGTAACTATTGCTCAAGAAAACAGCTTGTGGT
94016808 GAATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAA
66 GAATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAA
94016873 TTGATGTACAAGATAAATATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGT
131 TTGATGTACAAGATAAATATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGT
*
94016938 GATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAAATATGTATGAGATATGTATATGTGGTA
196 GATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAAATATATATGAGATATGTATATGTGGTA
* *
94017003 AAGCCGAATGGCTAATGTGAA
261 AAGCCGAATGACGAATGTGAA
94017024 TGTTGTAACA
Statistics
Matches: 274, Mismatches: 7, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
286 274 1.00
ACGTcount: A:0.34, C:0.08, G:0.24, T:0.34
Consensus pattern (286 bp):
TTTGAGTTTTGTAGCTCCAGTTATAAATAATTTAGTAACTATTGCTCAAGAAAACAGCTTGTGGT
GAATATGTGAATTTGTTGTAAACATTGATGAAACTATTTGAGTTGCTTATAAGCTATGGCTGAAA
TTGATGTACAAGATAAATATATATATGTGTGGTGAAGCCGAATGGCTAATGTGAAATATATGTGT
GATATGTATATGTGGTAAAGCCGAATGGCAAATGTGAAATATATATGAGATATGTATATGTGGTA
AAGCCGAATGACGAATGTGAAATATG
Found at i:94021717 original size:44 final size:44
Alignment explanation
Indices: 94021654--94021978 Score: 281
Period size: 44 Copynumber: 7.2 Consensus size: 44
94021644 CATTATGAAG
* * * * *
94021654 AATCTAATCTCCCTGAAGTTGTAGTAGAGCAGATTGAAGCCACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * *
94021698 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* * * *
94021742 AATCTCATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * * *
94021787 AATCTTATTTCCCTGAAGTTACAGTGGAACAGATTAAAGTTACAAGTTACA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATT---G----AAGCTACA
* * *
94021838 AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGCTACT
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
* **
94021882 AATCTTATCTCCCTGAAGTTGTAGTGGAGCAGATTGAAAATAGCA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTA-CA
* * ** ** * *
94021927 GATCCTATCTTTCTGAAGTTGCAGTAAAGCAGATTAAAGCTATA
1 AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
*
94021971 AACCTTAT
1 AATCTTAT
94021979 AAGGTTGAAG
Statistics
Matches: 225, Mismatches: 47, Indels: 18
0.78 0.16 0.06
Matches are distributed among these distances:
44 122 0.54
45 64 0.28
48 2 0.01
51 32 0.14
52 5 0.02
ACGTcount: A:0.33, C:0.18, G:0.19, T:0.30
Consensus pattern (44 bp):
AATCTTATCTCCCTGAAGTTGCAGTGGAGCAGATTGAAGCTACA
Found at i:94021859 original size:140 final size:140
Alignment explanation
Indices: 94021698--94021965 Score: 387
Period size: 140 Copynumber: 1.9 Consensus size: 140
94021688 TGAAGCCACT
*
94021698 AATCTTATCTCCCTGAAGTTGCAGTGGAGTAGATTAAAACCACAAATCTCATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAAACCACAAATCTCATCTCCCTGAAGTTG
* * * *
94021763 TAGTGGAGTAGATTGAAGATAGCAAATCTTAT-TTCCCTGAAGTTACAGTGGAA-CAGATTAAAG
66 TAGTGGAGCAGATTGAAAATAGCAAATCCTATCTT-CCTGAAGTTACAGT-AAAGCAGATTAAAG
94021826 TTACAAGTTACA
129 TTACAAGTTACA
* * * * *
94021838 AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGCTACTAATCTTATCTCCCTGAAGTTG
1 AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAAACCACAAATCTCATCTCCCTGAAGTTG
* * *
94021903 TAGTGGAGCAGATTGAAAATAGCAGATCCTATCTTTCTGAAGTTGCAGTAAAGCAGATTAAAG
66 TAGTGGAGCAGATTGAAAATAGCAAATCCTATCTTCCTGAAGTTACAGTAAAGCAGATTAAAG
94021966 CTATAAACCT
Statistics
Matches: 113, Mismatches: 13, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
139 2 0.02
140 109 0.96
141 2 0.02
ACGTcount: A:0.33, C:0.17, G:0.20, T:0.30
Consensus pattern (140 bp):
AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTAAAACCACAAATCTCATCTCCCTGAAGTTG
TAGTGGAGCAGATTGAAAATAGCAAATCCTATCTTCCTGAAGTTACAGTAAAGCAGATTAAAGTT
ACAAGTTACA
Found at i:94021872 original size:96 final size:95
Alignment explanation
Indices: 94021654--94021916 Score: 279
Period size: 96 Copynumber: 2.8 Consensus size: 95
94021644 CATTATGAAG
* * * * * ** * *
94021654 AATCTAATCTCCCTGAAGTTGTAGTAGAGCAGATTGAAGCCACTAATCTTATCTCCCTGAAGTTG
1 AATCTCATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGATACAAATCTTATCTCCCTGAAGTTA
** *
94021719 CAGTGGAGTAGATTAAA---AC----CACA
66 CAGTGGAACAGATTAAAGTTACAAGTTACA
* * *
94021742 AATCTCATCTCCCTGAAGTTGTAGTGGAGTAGATTGAAGATAGCAAATCTTATTTCCCTGAAGTT
1 AATCTCATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGATA-CAAATCTTATCTCCCTGAAGTT
94021807 ACAGTGGAACAGATTAAAGTTACAAGTTACA
65 ACAGTGGAACAGATTAAAGTTACAAGTTACA
* * * *
94021838 AATCTTATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGCTACTAATCTTATCTCCCTGAAGTTG
1 AATCTCATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGATACAAATCTTATCTCCCTGAAGTTA
* *
94021903 TAGTGGAGCAGATT
66 CAGTGGAACAGATT
94021917 GAAAATAGCA
Statistics
Matches: 147, Mismatches: 20, Indels: 9
0.84 0.11 0.05
Matches are distributed among these distances:
88 37 0.25
89 35 0.24
92 2 0.01
95 32 0.22
96 41 0.28
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (95 bp):
AATCTCATCTCCCTGAAGTTGCAATGGAGTAGATTGAAGATACAAATCTTATCTCCCTGAAGTTA
CAGTGGAACAGATTAAAGTTACAAGTTACA
Found at i:94022105 original size:49 final size:51
Alignment explanation
Indices: 94022038--94022321 Score: 191
Period size: 51 Copynumber: 5.8 Consensus size: 51
94022028 TGAAGATAAC
* *
94022038 AAATCTTATTTCCCTGAAGTTGTAGTGG-A-AGATTAAAGCTACAAGCTAA
1 AAATCTTATTTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTAA
* * * *
94022087 AAATCTTATTTTCTTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCCAT
1 AAATCTTATTTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTAA
* * * ** * *
94022138 TAATCTTATCTCCCTGAAGTTGCAGT--AA-AG-C---AGATTGAAGCGAC
1 AAATCTTATTTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTAA
* * * * * * *
94022182 AAATCCTA-TACCTCTGAAGTTGCAGTGGATTGGATTAAATCTA-ATA--TAGC
1 AAATCTTATTTCC-CTGAAGTTGCAGTGGAATAGACTAAAGCTACA-AGCTA-A
* * *
94022232 AAGTCTTATTTCCCTGAAGTTGCAGTGGAATAGACTGAAGCTACAAGCTAC
1 AAATCTTATTTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTAA
* * * *
94022283 AAATCTCATCT-CCTCGAATTTGCAGTGGAATAGATTAAA
1 AAATCTTATTTCCCT-GAAGTTGCAGTGGAATAGACTAAA
94022322 ACACTAAATT
Statistics
Matches: 178, Mismatches: 40, Indels: 32
0.71 0.16 0.13
Matches are distributed among these distances:
43 2 0.01
44 27 0.15
46 1 0.01
47 2 0.01
48 2 0.01
49 28 0.16
50 38 0.21
51 76 0.43
52 2 0.01
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.30
Consensus pattern (51 bp):
AAATCTTATTTCCCTGAAGTTGCAGTGGAATAGACTAAAGCTACAAGCTAA
Found at i:94028251 original size:39 final size:39
Alignment explanation
Indices: 94028197--94028345 Score: 237
Period size: 39 Copynumber: 3.8 Consensus size: 39
94028187 CAGTGATGTT
* *
94028197 TATCCAGACTTAGGGTCCGCAGGCTATATGCTAGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
*
94028236 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
94028275 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
1 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
* *
94028314 TAAT-CGGACTTAAGGTCCGTAGGCTATGTGCT
1 T-ATCCGGACTTAGGGTCCGCAGGCTATGTGCT
94028346 GGTAATATGT
Statistics
Matches: 103, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
39 101 0.98
40 2 0.02
ACGTcount: A:0.23, C:0.20, G:0.28, T:0.29
Consensus pattern (39 bp):
TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTA
Found at i:94028376 original size:78 final size:78
Alignment explanation
Indices: 94028197--94028377 Score: 206
Period size: 78 Copynumber: 2.3 Consensus size: 78
94028187 CAGTGATGTT
* ** * *
94028197 TATCCAGACTTAGGGTCCGCAGGCTATATGCTAGAATTATATCCGGACTTAGGGTCCGCAGGCTA
1 TATCCGGACTTAAAGTCCACAGGCTATATGCTAGAATTATATCCGGACTTAAGGTCCGCAGGCTA
94028262 TGTGCTGGAATTA
66 TGTGCTGGAATTA
** * * *
94028275 TATCCGGACTTAGGGTCCGCAGGCTATGTGCTAGAATTATAAT-CGGACTTAAGGTCCGTAGGCT
1 TATCCGGACTTAAAGTCCACAGGCTATATGCTAGAATTAT-ATCCGGACTTAAGGTCCGCAGGCT
94028339 ATGTGCTGGTAA-TA
65 ATGTGCTGG-AATTA
* *
94028353 TGTCCGGGC-TAAAGTCCCACAGGCT
1 TATCCGGACTTAAAGT-CCACAGGCT
94028378 TCGAGCTGGT
Statistics
Matches: 91, Mismatches: 9, Indels: 6
0.86 0.08 0.06
Matches are distributed among these distances:
77 4 0.04
78 83 0.91
79 4 0.04
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.28
Consensus pattern (78 bp):
TATCCGGACTTAAAGTCCACAGGCTATATGCTAGAATTATATCCGGACTTAAGGTCCGCAGGCTA
TGTGCTGGAATTA
Found at i:94028424 original size:38 final size:38
Alignment explanation
Indices: 94028334--94028428 Score: 111
Period size: 39 Copynumber: 2.4 Consensus size: 38
94028324 TAAGGTCCGT
*
94028334 AGGCTATGTGCTGGTAATATGTCCGGGCTAAAGTCCCAC
1 AGGCT-TGTGCTGGTAATATGACCGGGCTAAAGTCCCAC
* * * *
94028373 AGGCTTCGAGCTGGTATTAT-ACCGGGTTTAAATTCCCAC
1 AGGCTT-GTGCTGGTAATATGACCGGG-CTAAAGTCCCAC
94028412 AGGCTTGTGCTGGTAAT
1 AGGCTTGTGCTGGTAAT
94028429 TGGTTTCAAG
Statistics
Matches: 47, Mismatches: 7, Indels: 5
0.80 0.12 0.08
Matches are distributed among these distances:
38 15 0.32
39 32 0.68
ACGTcount: A:0.22, C:0.21, G:0.27, T:0.29
Consensus pattern (38 bp):
AGGCTTGTGCTGGTAATATGACCGGGCTAAAGTCCCAC
Found at i:94028611 original size:2 final size:2
Alignment explanation
Indices: 94028604--94028635 Score: 55
Period size: 2 Copynumber: 16.0 Consensus size: 2
94028594 CATCAAAGAA
*
94028604 AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
94028636 GATTGATGGT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:94029819 original size:209 final size:209
Alignment explanation
Indices: 94029569--94029986 Score: 820
Period size: 208 Copynumber: 2.0 Consensus size: 209
94029559 ACCCTTATTG
94029569 GCCTACTTTTTATTATTTGCAATTTATACCCCTAGTTTTTTTTAAATTTTAATTAAATCCTCTAT
1 GCCTACTTTTTATTATTTGCAATTTATACCCCTAGTTTTTTTTAAATTTTAATTAAATCCTCTAT
94029634 TTAGTTAATTTCTGTTAGTTGAGGAATAAGTTGGGATTTTATTTTTCATTGTAATGGAAGTGATT
66 TTAGTTAATTTCTGTTAGTTGAGGAATAAGTTGGGATTTTATTTTTCATTGTAATGGAAGTGATT
94029699 GTTGATTGTGTTTAATCATTTTTTATGCTCGATCAGGGGAGAATCATGAGATGTTTGGTAATACG
131 GTTGATTGTGTTTAATCATTTTTTATGCTCGATCAGGGGAGAATCATGAGATGTTTGGTAATACG
*
94029764 TGATTTTTGAGACA
196 TGATTTTCGAGACA
94029778 GCCTACTTTTTATTATTTGCAA-TTATACCCCTAGTTTTTTTTAAATTTTAATTAAATCCTCTAT
1 GCCTACTTTTTATTATTTGCAATTTATACCCCTAGTTTTTTTTAAATTTTAATTAAATCCTCTAT
94029842 TTAGTTAATTTCTGTTAGTTGAGGAATAAGTTGGGATTTTATTTTTCATTGTAATGGAAGTGATT
66 TTAGTTAATTTCTGTTAGTTGAGGAATAAGTTGGGATTTTATTTTTCATTGTAATGGAAGTGATT
94029907 GTTGATTGTGTTTAATCATTTTTTATGCTCGATCAGGGGAGAATCATGAGATGTTTGGTAATACG
131 GTTGATTGTGTTTAATCATTTTTTATGCTCGATCAGGGGAGAATCATGAGATGTTTGGTAATACG
94029972 TGATTTTCGAGACA
196 TGATTTTCGAGACA
94029986 G
1 G
94029987 GTTTTAAAGA
Statistics
Matches: 208, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
208 186 0.89
209 22 0.11
ACGTcount: A:0.26, C:0.10, G:0.18, T:0.46
Consensus pattern (209 bp):
GCCTACTTTTTATTATTTGCAATTTATACCCCTAGTTTTTTTTAAATTTTAATTAAATCCTCTAT
TTAGTTAATTTCTGTTAGTTGAGGAATAAGTTGGGATTTTATTTTTCATTGTAATGGAAGTGATT
GTTGATTGTGTTTAATCATTTTTTATGCTCGATCAGGGGAGAATCATGAGATGTTTGGTAATACG
TGATTTTCGAGACA
Found at i:94047060 original size:18 final size:18
Alignment explanation
Indices: 94047037--94047079 Score: 59
Period size: 18 Copynumber: 2.4 Consensus size: 18
94047027 CCCTTCCCCC
*
94047037 TTCTTTCATTTGTTTATT
1 TTCTTTCATTTATTTATT
*
94047055 TTCTTTCGTTTATTTATT
1 TTCTTTCATTTATTTATT
*
94047073 TGCTTTC
1 TTCTTTC
94047080 CTTTTATGCG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.09, C:0.14, G:0.07, T:0.70
Consensus pattern (18 bp):
TTCTTTCATTTATTTATT
Found at i:94048814 original size:2 final size:2
Alignment explanation
Indices: 94048807--94048831 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
94048797 ACAGAATCTC
94048807 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
94048832 AGATTTATTC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Done.