Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 278 of 297
Found at i:94661337 original size:79 final size:80
Alignment explanation
Indices: 94661094--94661352 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
94661084 AAGTGAATAT
* * * * * *
94661094 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
94661158 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
94661174 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
94661239 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
94661254 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
94661318 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
94661333 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
94661353 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:94669091 original size:40 final size:40
Alignment explanation
Indices: 94669008--94669270 Score: 325
Period size: 40 Copynumber: 6.6 Consensus size: 40
94668998 TTGAATGCTG
* * * * * *
94669008 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
* * * * *
94669048 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
94669088 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
94669128 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
94669168 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94669208 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
94669247 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
94669271 TGAACGAGGA
Statistics
Matches: 201, Mismatches: 19, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
39 35 0.17
40 158 0.79
41 8 0.04
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:94669290 original size:79 final size:80
Alignment explanation
Indices: 94669047--94669305 Score: 256
Period size: 80 Copynumber: 3.3 Consensus size: 80
94669037 AAGTGAATAT
* * * * * *
94669047 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCAT
** * *
94669111 TCGTGCGAGTTA-TTAA
65 TCGAACGAG-GAGCTAA
* * *
94669127 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
** ** *
94669192 CGTGCGAGTTGTTAA
66 CGAACGAGGAGCTAA
* * *
94669207 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
* *
94669271 TGAACGAGGAGCTAT
66 CGAACGAGGAGCTAA
*
94669286 ATCC-GGTTAAATCCCGAAGG
1 ATCCGGGTTAAGTCCCGAAGG
94669306 TACGTGATTT
Statistics
Matches: 156, Mismatches: 21, Indels: 6
0.85 0.11 0.03
Matches are distributed among these distances:
78 14 0.09
79 48 0.31
80 94 0.60
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (80 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATT
CGAACGAGGAGCTAA
Found at i:94679927 original size:17 final size:18
Alignment explanation
Indices: 94679907--94679940 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94679897 TAAAAGAGTT
*
94679907 AATTA-GGATTAAATTGG
1 AATTAGGGAATAAATTGG
94679924 AATTAGGGAATAAATTG
1 AATTAGGGAATAAATTG
94679941 AATAAAAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 5 0.33
18 10 0.67
ACGTcount: A:0.44, C:0.00, G:0.24, T:0.32
Consensus pattern (18 bp):
AATTAGGGAATAAATTGG
Found at i:94680488 original size:27 final size:27
Alignment explanation
Indices: 94680450--94680545 Score: 97
Period size: 27 Copynumber: 3.4 Consensus size: 27
94680440 ATGCCTTATT
94680450 GGTGTGTTTGGGAGGATATGA-TATACC
1 GGTGTGTTTGGGAGGATAT-ATTATACC
* *
94680477 GGTGTGTTTGGGAGGCTATATTATACT
1 GGTGTGTTTGGGAGGATATATTATACC
*
94680504 GGTGTGTTAT-GGAGGATTTATATTATTCC
1 GGTGTGTT-TGGGAGGA--TATATTATACC
*
94680533 GGGTGTGATTGGG
1 -GGTGTGTTTGGG
94680546 TCGGATATTT
Statistics
Matches: 57, Mismatches: 6, Indels: 9
0.79 0.08 0.12
Matches are distributed among these distances:
26 1 0.02
27 36 0.63
28 1 0.02
29 10 0.18
30 9 0.16
ACGTcount: A:0.19, C:0.06, G:0.36, T:0.39
Consensus pattern (27 bp):
GGTGTGTTTGGGAGGATATATTATACC
Found at i:94684073 original size:35 final size:36
Alignment explanation
Indices: 94683980--94684181 Score: 200
Period size: 35 Copynumber: 5.7 Consensus size: 36
94683970 GGTGTTGACA
* *
94683980 TAGACAAGGTCTATCCCAACCTATTTAAGTTTGCCT
1 TAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCT
* *
94684016 TAGACAAGGTCTGTCCCAACCTTTTTAGGGGTT-CCT
1 TAGACAAGGTCTATCCCAACCTTTTTA-AGGTTGCCT
* **
94684052 TAGAC-AGCTCTATCCCAACCTTTTTTAA--AAGCCT
1 TAGACAAGGTCTATCCCAACC-TTTTTAAGGTTGCCT
* *
94684086 TAGACAAGGTCTATCCCAACATTTTTAAGGTTGTCT
1 TAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCT
* * * *
94684122 TAGAC-GGGTATATCCCAACGTTTTTAAGGTTGTCT
1 TAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCT
* * *
94684157 TAGA-AGGGTCTATCCTAATCTTTTT
1 TAGACAAGGTCTATCCCAACCTTTTT
94684182 TAAACGTCGT
Statistics
Matches: 138, Mismatches: 21, Indels: 15
0.79 0.12 0.09
Matches are distributed among these distances:
34 15 0.11
35 73 0.53
36 47 0.34
37 3 0.02
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (36 bp):
TAGACAAGGTCTATCCCAACCTTTTTAAGGTTGCCT
Found at i:94689084 original size:7 final size:6
Alignment explanation
Indices: 94689058--94689082 Score: 50
Period size: 6 Copynumber: 4.2 Consensus size: 6
94689048 TAAAATTTAG
94689058 TATTTT TATTTT TATTTT TATTTT T
1 TATTTT TATTTT TATTTT TATTTT T
94689083 TAAATTTAAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 19 1.00
ACGTcount: A:0.16, C:0.00, G:0.00, T:0.84
Consensus pattern (6 bp):
TATTTT
Found at i:94706083 original size:15 final size:14
Alignment explanation
Indices: 94706063--94706092 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
94706053 CAATTATAAA
94706063 TTTTTATTTTCATAT
1 TTTTTATTTTC-TAT
94706078 TTTTTATTTTCTAT
1 TTTTTATTTTCTAT
94706092 T
1 T
94706093 GATCCATCAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 4 0.27
15 11 0.73
ACGTcount: A:0.17, C:0.07, G:0.00, T:0.77
Consensus pattern (14 bp):
TTTTTATTTTCTAT
Found at i:94709094 original size:16 final size:16
Alignment explanation
Indices: 94709075--94709105 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
94709065 TGGTGGTTTT
94709075 TTAGTTAATTTAGTTG
1 TTAGTTAATTTAGTTG
94709091 TTAGTTAATTTAGTT
1 TTAGTTAATTTAGTT
94709106 AGTTTTTATT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.26, C:0.00, G:0.16, T:0.58
Consensus pattern (16 bp):
TTAGTTAATTTAGTTG
Found at i:94710664 original size:42 final size:42
Alignment explanation
Indices: 94710555--94710715 Score: 125
Period size: 42 Copynumber: 3.8 Consensus size: 42
94710545 AGCTCATACA
* * * *
94710555 ATGCCAACGTCCCATA-AGTGGTCTTACATGTAATC-AAATATCA
1 ATGCCAACGTCCCAGACA-TGGTCTTACACG-AATCTCAA-ATCG
* *
94710598 ATGCC-ACTGTCCCAGA-TTGGGTCTTACACGAA-GTCAAATACG
1 ATGCCAAC-GTCCCAGACAT-GGTCTTACACGAATCTCAAAT-CG
** *
94710640 ATGCTGATGTCCCAGACATGGTCTTACACGTAAATCTCAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACG--AATCTCAAATCG
*
94710684 ATGCCAACGTCCCAGACGTGGTCTTACACGAA
1 ATGCCAACGTCCCAGACATGGTCTTACACGAA
94710716 ATCACATATC
Statistics
Matches: 95, Mismatches: 14, Indels: 19
0.74 0.11 0.15
Matches are distributed among these distances:
41 2 0.02
42 33 0.35
43 24 0.25
44 30 0.32
45 6 0.06
ACGTcount: A:0.30, C:0.26, G:0.19, T:0.25
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGAATCTCAAATCG
Found at i:94711206 original size:167 final size:167
Alignment explanation
Indices: 94711014--94711347 Score: 668
Period size: 167 Copynumber: 2.0 Consensus size: 167
94711004 ACACATTCAA
94711014 TATTTAACTCCTTTATTCACCAATTCATTCAATTCAATCCATATACACATATTTAGGGCATTTTA
1 TATTTAACTCCTTTATTCACCAATTCATTCAATTCAATCCATATACACATATTTAGGGCATTTTA
94711079 CAAATTAACCCTCATATTTTTACATTTTAACACTTTAGTCCTTAATTACAAAAATCACAAAATAT
66 CAAATTAACCCTCATATTTTTACATTTTAACACTTTAGTCCTTAATTACAAAAATCACAAAATAT
94711144 ACAAAATTTCTATATACACATGCTTAGCCGAATTTTC
131 ACAAAATTTCTATATACACATGCTTAGCCGAATTTTC
94711181 TATTTAACTCCTTTATTCACCAATTCATTCAATTCAATCCATATACACATATTTAGGGCATTTTA
1 TATTTAACTCCTTTATTCACCAATTCATTCAATTCAATCCATATACACATATTTAGGGCATTTTA
94711246 CAAATTAACCCTCATATTTTTACATTTTAACACTTTAGTCCTTAATTACAAAAATCACAAAATAT
66 CAAATTAACCCTCATATTTTTACATTTTAACACTTTAGTCCTTAATTACAAAAATCACAAAATAT
94711311 ACAAAATTTCTATATACACATGCTTAGCCGAATTTTC
131 ACAAAATTTCTATATACACATGCTTAGCCGAATTTTC
94711348 CCTTAGCTCA
Statistics
Matches: 167, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
167 167 1.00
ACGTcount: A:0.37, C:0.21, G:0.04, T:0.38
Consensus pattern (167 bp):
TATTTAACTCCTTTATTCACCAATTCATTCAATTCAATCCATATACACATATTTAGGGCATTTTA
CAAATTAACCCTCATATTTTTACATTTTAACACTTTAGTCCTTAATTACAAAAATCACAAAATAT
ACAAAATTTCTATATACACATGCTTAGCCGAATTTTC
Found at i:94716115 original size:69 final size:69
Alignment explanation
Indices: 94716004--94716145 Score: 257
Period size: 69 Copynumber: 2.1 Consensus size: 69
94715994 CTGTTGATTT
94716004 TGATCCAATAACTCTACTTCTATTTAAATAGTACAGCAGCTACTACATTTAGTAATCCATCTCTT
1 TGATCCAATAACTCTACTTCTATTTAAATAGTACAGCAGCTACTACATTTAGTAATCCATCTCTT
94716069 AAAA
66 AAAA
* *
94716073 TGATCCAATAACTTTACTTCTATTTAAATAGTACAGCAGCTACTACCTTTAGTAATCCATCTCTT
1 TGATCCAATAACTCTACTTCTATTTAAATAGTACAGCAGCTACTACATTTAGTAATCCATCTCTT
*
94716138 AAAG
66 AAAA
94716142 TGAT
1 TGAT
94716146 TGTGAGCCCT
Statistics
Matches: 70, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
69 70 1.00
ACGTcount: A:0.35, C:0.21, G:0.08, T:0.36
Consensus pattern (69 bp):
TGATCCAATAACTCTACTTCTATTTAAATAGTACAGCAGCTACTACATTTAGTAATCCATCTCTT
AAAA
Found at i:94721152 original size:638 final size:638
Alignment explanation
Indices: 94719922--94721197 Score: 2401
Period size: 638 Copynumber: 2.0 Consensus size: 638
94719912 TCATGCTCTG
* *
94719922 CTACACATGCATTAGAAATAGCCTTGCCCTTTTGTAGCTTAGGACAATTCTTTTTCCAATGCCCT
1 CTACACATGCATCAGAAATAGCCTTGCCCTTTTGTAACTTAGGACAATTCTTTTTCCAATGCCCT
94719987 TTCTCACGACAAAAAGCACATTCATCTTTGGCAGGTCTCCCTTTGGACTTACTCCTTCTACCAGA
66 TTCTCACGACAAAAAGCACATTCATCTTTGGCAGGTCTCCCTTTGGACTTACTCCTTCTACCAGA
* * * * *
94720052 TTTGTTGCTGCGCGAACGACTTCTTACTGTTAAGACTTCTGTAGTTGTATCTCTGTGATCTTTTT
131 TTTGCTGCTGCGCGAACGACCTATTACTGTTAAGAATTCTGTAGTTGTATCTCTGTGATCCTTTT
94720117 TATCTTTCTTTCGAGTCTCAGATCTATACAACGCACTACAGACTGCATCAAATGTGATTGTATCC
196 TATCTTTCTTTCGAGTCTCAGATCTATACAACGCACTACAGACTGCATCAAATGTGATTGTATCC
94720182 TTCCCATGAAGCAATGTGGTAAGATGATCATATTCATTAGGAAGAGAATTTAACAACAATAATGC
261 TTCCCATGAAGCAATGTGGTAAGATGATCATATTCATTAGGAAGAGAATTTAACAACAATAATGC
94720247 CTTATGTTCATCTTCAAATTTCTCATCCAAATTTAGCAAGTCTACTAAAATTTTATTGAATGAGT
326 CTTATGTTCATCTTCAAATTTCTCATCCAAATTTAGCAAGTCTACTAAAATTTTATTGAATGAGT
94720312 TCACATGGTCATTCATCGACATACCAGGTGCATACGTGAATCAGTAAAGCTTCTTTTCATATAAA
391 TCACATGGTCATTCATCGACATACCAGGTGCATACGTGAATCAGTAAAGCTTCTTTTCATATAAA
94720377 GCTTATTTTCAAGACTTTTCGTTAGAAACTTTTCCTCCAGTGTATCCCACAACTTCTTCGATGAT
456 GCTTATTTTCAAGACTTTTCGTTAGAAACTTTTCCTCCAGTGTATCCCACAACTTCTTCGATGAT
94720442 GTCTCCCTCATGAAAAAGTTCTTCTACTCTTTGGCCAAACATAGGCGGAGTGTACCACACGCCTG
521 GTCTCCCTCATGAAAAAGTTCTTCTACTCTTTGGCCAAACATAGGCGGAGTGTACCACACGCCTG
94720507 TCTATTGATCTTGCCCCACTCCTTGTCATCCATCTTGTCAGGTTTTTCTTTAA
586 TCTATTGATCTTGCCCCACTCCTTGTCATCCATCTTGTCAGGTTTTTCTTTAA
*
94720560 CTACACGTGCATCAGAAATAGCCTTGCCCTTTTGTAACTTAGGACAATTCTTTTTCCAATGCCCT
1 CTACACATGCATCAGAAATAGCCTTGCCCTTTTGTAACTTAGGACAATTCTTTTTCCAATGCCCT
** *
94720625 TTCTCATTACAAAAAGCACATTCATCTTTGGCAGGTCTCCCTTTGGACTTTC-CCATTCTACCAG
66 TTCTCACGACAAAAAGCACATTCATCTTTGGCAGGTCTCCCTTTGGACTTACTCC-TTCTACCAG
* * * *
94720689 GTTTGCTGCTGTGTGAACGACCTATTACTGTTAAGAATTTTGTAGTTGTATCTCTGTGATCCTTT
130 ATTTGCTGCTGCGCGAACGACCTATTACTGTTAAGAATTCTGTAGTTGTATCTCTGTGATCCTTT
94720754 TTATCTTTCTTTCGAGTCTCAGATCTATACAACGCACTACAGACTGCATCAAATGTGATTGTATC
195 TTATCTTTCTTTCGAGTCTCAGATCTATACAACGCACTACAGACTGCATCAAATGTGATTGTATC
94720819 CTTCCCATGAAGCAATGTGGTAAGATGATCATATTCATTAGGAAGAGAATTTAACAACAATAATG
260 CTTCCCATGAAGCAATGTGGTAAGATGATCATATTCATTAGGAAGAGAATTTAACAACAATAATG
94720884 CCTTATGTTCATCTTCAAATTTCTCATCCAAATTTAGCAAGTCTACTAAAATTTTATTGAATGAG
325 CCTTATGTTCATCTTCAAATTTCTCATCCAAATTTAGCAAGTCTACTAAAATTTTATTGAATGAG
94720949 TTCACATGGTCATTCATCGACATACCAGGTGCATACGTGAATCAGTAAAGCTTCTTTTCATATAA
390 TTCACATGGTCATTCATCGACATACCAGGTGCATACGTGAATCAGTAAAGCTTCTTTTCATATAA
94721014 AGCTTATTTTCAAGACTTTTCGTTAGAAACTTTTCCTCCAGTGTATCCCACAACTTCTTCGATGA
455 AGCTTATTTTCAAGACTTTTCGTTAGAAACTTTTCCTCCAGTGTATCCCACAACTTCTTCGATGA
94721079 TGTCTCCCTCATGAAAAAGTTCTTCTACTCTTTGGCCAAACATAGGCGGAGTGTACCACACGCCT
520 TGTCTCCCTCATGAAAAAGTTCTTCTACTCTTTGGCCAAACATAGGCGGAGTGTACCACACGCCT
94721144 GTCTATTGATCTTGCCCCACTCCTTGTCATCCATCTTGTCAGGTTTTTCTTTAA
585 GTCTATTGATCTTGCCCCACTCCTTGTCATCCATCTTGTCAGGTTTTTCTTTAA
94721198 GGGCTATATC
Statistics
Matches: 622, Mismatches: 15, Indels: 2
0.97 0.02 0.00
Matches are distributed among these distances:
637 2 0.00
638 620 1.00
ACGTcount: A:0.26, C:0.23, G:0.15, T:0.36
Consensus pattern (638 bp):
CTACACATGCATCAGAAATAGCCTTGCCCTTTTGTAACTTAGGACAATTCTTTTTCCAATGCCCT
TTCTCACGACAAAAAGCACATTCATCTTTGGCAGGTCTCCCTTTGGACTTACTCCTTCTACCAGA
TTTGCTGCTGCGCGAACGACCTATTACTGTTAAGAATTCTGTAGTTGTATCTCTGTGATCCTTTT
TATCTTTCTTTCGAGTCTCAGATCTATACAACGCACTACAGACTGCATCAAATGTGATTGTATCC
TTCCCATGAAGCAATGTGGTAAGATGATCATATTCATTAGGAAGAGAATTTAACAACAATAATGC
CTTATGTTCATCTTCAAATTTCTCATCCAAATTTAGCAAGTCTACTAAAATTTTATTGAATGAGT
TCACATGGTCATTCATCGACATACCAGGTGCATACGTGAATCAGTAAAGCTTCTTTTCATATAAA
GCTTATTTTCAAGACTTTTCGTTAGAAACTTTTCCTCCAGTGTATCCCACAACTTCTTCGATGAT
GTCTCCCTCATGAAAAAGTTCTTCTACTCTTTGGCCAAACATAGGCGGAGTGTACCACACGCCTG
TCTATTGATCTTGCCCCACTCCTTGTCATCCATCTTGTCAGGTTTTTCTTTAA
Found at i:94732095 original size:31 final size:31
Alignment explanation
Indices: 94732057--94732121 Score: 130
Period size: 31 Copynumber: 2.1 Consensus size: 31
94732047 ATATGAAATT
94732057 AAAGCTTAATGAGTCTAGTTTCACATAAAGG
1 AAAGCTTAATGAGTCTAGTTTCACATAAAGG
94732088 AAAGCTTAATGAGTCTAGTTTCACATAAAGG
1 AAAGCTTAATGAGTCTAGTTTCACATAAAGG
94732119 AAA
1 AAA
94732122 CAGTGTAAGC
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 34 1.00
ACGTcount: A:0.42, C:0.12, G:0.18, T:0.28
Consensus pattern (31 bp):
AAAGCTTAATGAGTCTAGTTTCACATAAAGG
Found at i:94744261 original size:39 final size:40
Alignment explanation
Indices: 94744193--94744269 Score: 138
Period size: 39 Copynumber: 1.9 Consensus size: 40
94744183 TATACTTGGC
*
94744193 TCGGTCGTTGAACTTGAATATAAAGATGTCACACCACCGT
1 TCGGTCGTTGAACCTGAATATAAAGATGTCACACCACCGT
94744233 TCGGTCGTTGAACCTG-ATATAAAGATGTCACACCACC
1 TCGGTCGTTGAACCTGAATATAAAGATGTCACACCACC
94744270 ACCATCTCAC
Statistics
Matches: 36, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
39 21 0.58
40 15 0.42
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.26
Consensus pattern (40 bp):
TCGGTCGTTGAACCTGAATATAAAGATGTCACACCACCGT
Found at i:94753005 original size:28 final size:28
Alignment explanation
Indices: 94752963--94753064 Score: 118
Period size: 28 Copynumber: 3.6 Consensus size: 28
94752953 TAATTATATG
** *
94752963 TGGCACTTAACGTGCGAAGTATCGGGGA
1 TGGCACTTAGTGTGCGAAGTATCGAGGA
* * *
94752991 TGGCACTTAGTGTGCGATA-CATCCAGAA
1 TGGCACTTAGTGTGCGA-AGTATCGAGGA
94753019 TGGCACTTAGTGTGCGAAGTAAT-GAGGA
1 TGGCACTTAGTGTGCGAAGT-ATCGAGGA
94753047 TGGCACTTAGTGTGCGAA
1 TGGCACTTAGTGTGCGAA
94753065 ACATCCAGAA
Statistics
Matches: 62, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
27 1 0.02
28 58 0.94
29 3 0.05
ACGTcount: A:0.26, C:0.17, G:0.32, T:0.25
Consensus pattern (28 bp):
TGGCACTTAGTGTGCGAAGTATCGAGGA
Found at i:94753049 original size:56 final size:55
Alignment explanation
Indices: 94752963--94753124 Score: 195
Period size: 56 Copynumber: 2.9 Consensus size: 55
94752953 TAATTATATG
**
94752963 TGGCACTTAACGTGCGAAGTATCGGGGATGGCACTTAGTGTGCGATACATCCAGAA
1 TGGCACTTAGTGTGCGAAGTATC-GGGATGGCACTTAGTGTGCGATACATCCAGAA
*
94753019 TGGCACTTAGTGTGCGAAGTAAT-GAGGATGGCACTTAGTGTGCGAAACATCCAGAA
1 TGGCACTTAGTGTGCGAAGT-ATCG-GGATGGCACTTAGTGTGCGATACATCCAGAA
* **
94753075 CGAAACTTAGTGTGC-AAGGTATCGGGTATGGCA-TCTAGTGTGCGATACAT
1 TGGCACTTAGTGTGCGAA-GTATCGGG-ATGGCACT-TAGTGTGCGATACAT
94753125 TGAATATTCA
Statistics
Matches: 93, Mismatches: 7, Indels: 12
0.83 0.06 0.11
Matches are distributed among these distances:
55 8 0.09
56 83 0.89
57 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.30, T:0.25
Consensus pattern (55 bp):
TGGCACTTAGTGTGCGAAGTATCGGGATGGCACTTAGTGTGCGATACATCCAGAA
Found at i:94753228 original size:32 final size:32
Alignment explanation
Indices: 94753182--94753261 Score: 124
Period size: 32 Copynumber: 2.5 Consensus size: 32
94753172 TACGAGATGA
*
94753182 TACAGGTATCTACGAAAATTGGAACAATATGG
1 TACAGGTATGTACGAAAATTGGAACAATATGG
* *
94753214 TACAGGAATGTACGAAAATTGGTACAATATGG
1 TACAGGTATGTACGAAAATTGGAACAATATGG
*
94753246 TACATGTATGTACGAA
1 TACAGGTATGTACGAA
94753262 GATTCAATTG
Statistics
Matches: 43, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
32 43 1.00
ACGTcount: A:0.40, C:0.11, G:0.23, T:0.26
Consensus pattern (32 bp):
TACAGGTATGTACGAAAATTGGAACAATATGG
Found at i:94756270 original size:25 final size:25
Alignment explanation
Indices: 94756225--94756272 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
94756215 TGGTGCAATG
* *
94756225 TATTAAATATCTATATGTGATTACT
1 TATTAAATATATATATATGATTACT
94756250 TATTAAAT-TATATAATATGATTA
1 TATTAAATATATAT-ATATGATTA
94756273 AATGATTAGA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 4 0.20
25 16 0.80
ACGTcount: A:0.42, C:0.04, G:0.06, T:0.48
Consensus pattern (25 bp):
TATTAAATATATATATATGATTACT
Found at i:94764755 original size:54 final size:54
Alignment explanation
Indices: 94764673--94765079 Score: 814
Period size: 54 Copynumber: 7.5 Consensus size: 54
94764663 ATTGTCGTTG
94764673 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
94764727 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
94764781 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
94764835 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
94764889 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
94764943 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
94764997 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
1 CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
94765051 CAGGGGATTTAGCCTGGACTGGTAATCCC
1 CAGGGGATTTAGCCTGGACTGGTAATCCC
94765080 CCTGTAAGGA
Statistics
Matches: 353, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
54 353 1.00
ACGTcount: A:0.27, C:0.19, G:0.23, T:0.31
Consensus pattern (54 bp):
CAGGGGATTTAGCCTGGACTGGTAATCCCGACAATACTCTATGAGTTTATATTA
Found at i:94765185 original size:46 final size:46
Alignment explanation
Indices: 94765128--94765294 Score: 273
Period size: 46 Copynumber: 3.6 Consensus size: 46
94765118 ATGAAATGTG
94765128 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
94765174 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
* *
94765220 TAAGACCATGGTTGAAAGATACCATGGCAACATGACA-GAAAATGAG
1 TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAA-GAA
* * *
94765266 TAAGACCATAGTTGAAAGACACTATGGCA
1 TAAGACCATGGTTGAAAGATACCATGGCA
94765295 TCACGTCAAA
Statistics
Matches: 115, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
45 5 0.04
46 110 0.96
ACGTcount: A:0.43, C:0.16, G:0.23, T:0.18
Consensus pattern (46 bp):
TAAGACCATGGTTGAAAGATACCATGGCAACGTGACATGAAAAGAA
Found at i:94765600 original size:23 final size:25
Alignment explanation
Indices: 94765555--94765601 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 25
94765545 AATAAATATA
*
94765555 CATAAAATATATGGAAATGATGAAG
1 CATAAAATATATGGAAATAATGAAG
*
94765580 CATAAAATAT-T-GATATAATGAA
1 CATAAAATATATGGAAATAATGAA
94765602 ATGAATGATA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
23 9 0.45
24 1 0.05
25 10 0.50
ACGTcount: A:0.53, C:0.04, G:0.15, T:0.28
Consensus pattern (25 bp):
CATAAAATATATGGAAATAATGAAG
Found at i:94767123 original size:16 final size:16
Alignment explanation
Indices: 94767104--94767136 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
94767094 TATGAGAGTT
94767104 ACTTTATTAATTCATG
1 ACTTTATTAATTCATG
94767120 ACTTTATTAATTCATG
1 ACTTTATTAATTCATG
94767136 A
1 A
94767137 TACGTTTGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (16 bp):
ACTTTATTAATTCATG
Found at i:94767239 original size:19 final size:18
Alignment explanation
Indices: 94767211--94767246 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
94767201 TCAAATGGAC
94767211 TAAATCGTAAAATATGAAT
1 TAAATCGT-AAATATGAAT
*
94767230 TAAATGGTAAATATGAA
1 TAAATCGTAAATATGAA
94767247 CAAATACATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 9 0.56
19 7 0.44
ACGTcount: A:0.53, C:0.03, G:0.14, T:0.31
Consensus pattern (18 bp):
TAAATCGTAAATATGAAT
Found at i:94770761 original size:5 final size:5
Alignment explanation
Indices: 94770751--94770789 Score: 51
Period size: 5 Copynumber: 7.6 Consensus size: 5
94770741 GCCTAAGATA
* *
94770751 TGAAT TGAAT TGAAT TGAAT ATGAAT TGTAT TAAAT TGA
1 TGAAT TGAAT TGAAT TGAAT -TGAAT TGAAT TGAAT TGA
94770790 GTTAAATTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
5 24 0.83
6 5 0.17
ACGTcount: A:0.41, C:0.00, G:0.18, T:0.41
Consensus pattern (5 bp):
TGAAT
Found at i:94770772 original size:21 final size:21
Alignment explanation
Indices: 94770748--94770789 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
94770738 TTTGCCTAAG
*
94770748 ATATGAATTGAATTGAATTGA
1 ATATGAATTGAATTAAATTGA
*
94770769 ATATGAATTGTATTAAATTGA
1 ATATGAATTGAATTAAATTGA
94770790 GTTAAATTTA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.43, C:0.00, G:0.17, T:0.40
Consensus pattern (21 bp):
ATATGAATTGAATTAAATTGA
Found at i:94771519 original size:25 final size:25
Alignment explanation
Indices: 94771368--94771526 Score: 94
Period size: 25 Copynumber: 6.4 Consensus size: 25
94771358 TGGCTCTTTG
* *
94771368 GAGCTACCCATTAT-TGGCTC-ACAT
1 GAGCTTCCCGTTATATGGCTCGA-AT
* **
94771392 GAGCTTCCCG-AATATGGCTCTTAT
1 GAGCTTCCCGTTATATGGCTCGAAT
* ** * *
94771416 GAGCTTCCTGTTATACAGCCCGGAT
1 GAGCTTCCCGTTATATGGCTCGAAT
* * *
94771441 AAGCTTCTCGTTACATGGCTC-ACAT
1 GAGCTTCCCGTTATATGGCTCGA-AT
* * *
94771466 GAGCTTCCTGTTATATGGCTTGAAA
1 GAGCTTCCCGTTATATGGCTCGAAT
*
94771491 GAGCTTCCCGTT-TATGTGCTCGTAT
1 GAGCTTCCCGTTATATG-GCTCGAAT
94771516 GAGCATTCCCG
1 GAGC-TTCCCG
94771527 AATATGAATT
Statistics
Matches: 99, Mismatches: 29, Indels: 12
0.71 0.21 0.09
Matches are distributed among these distances:
23 2 0.02
24 29 0.29
25 61 0.62
26 7 0.07
ACGTcount: A:0.21, C:0.26, G:0.21, T:0.32
Consensus pattern (25 bp):
GAGCTTCCCGTTATATGGCTCGAAT
Found at i:94786838 original size:19 final size:19
Alignment explanation
Indices: 94786814--94786851 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
94786804 GTCTAATCCT
94786814 AAATCAAAATTCATAAACC
1 AAATCAAAATTCATAAACC
*
94786833 AAATCAAATTTCATAAACC
1 AAATCAAAATTCATAAACC
94786852 TAATTAGACA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.55, C:0.21, G:0.00, T:0.24
Consensus pattern (19 bp):
AAATCAAAATTCATAAACC
Found at i:94795693 original size:39 final size:39
Alignment explanation
Indices: 94795576--94795876 Score: 407
Period size: 39 Copynumber: 7.6 Consensus size: 39
94795566 GCTCCTCGTT
* *
94795576 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
94795616 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
94795656 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
94795695 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
94795734 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
94795773 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
* * *
94795812 CAAATGCCTTCGGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGG-GCTTAGCCCGGA-ATTAGT-ATC-TCGCA
94795853 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGG-CTTAGCCCGGA
94795877 CATCATTCAA
Statistics
Matches: 243, Mismatches: 11, Indels: 15
0.90 0.04 0.06
Matches are distributed among these distances:
39 171 0.70
40 61 0.25
41 11 0.05
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGCTTAGCCCGGAATTAGTATCTCGCA
Found at i:94809522 original size:21 final size:22
Alignment explanation
Indices: 94809493--94809539 Score: 78
Period size: 21 Copynumber: 2.2 Consensus size: 22
94809483 CAGAAGGAGT
*
94809493 GAGTAGTACTTCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
94809515 GAGT-GTACTCCGCAGCAGGTG
1 GAGTAGTACTCCGCAGCAGGTG
94809536 GAGT
1 GAGT
94809540 TTGAGCAGAG
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
21 20 0.83
22 4 0.17
ACGTcount: A:0.21, C:0.19, G:0.38, T:0.21
Consensus pattern (22 bp):
GAGTAGTACTCCGCAGCAGGTG
Found at i:94811569 original size:107 final size:108
Alignment explanation
Indices: 94811450--94811664 Score: 405
Period size: 107 Copynumber: 2.0 Consensus size: 108
94811440 TAAACAAAAA
94811450 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAATTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAATTTTAAATAATAAAATTTCTAACAA
94811515 AATTGTATTAAAATTTTTGTTAATTACTCT-ATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
* *
94811557 ATTAGTTTAACAAAACAATGATATGTTAAGTTGGAATAAGTTTTAAATAATAAAATTTCTAACAA
1 ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAATTTTAAATAATAAAATTTCTAACAA
94811622 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
66 AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
94811665 TCGTGTTTTT
Statistics
Matches: 105, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
107 93 0.89
108 12 0.11
ACGTcount: A:0.44, C:0.06, G:0.09, T:0.42
Consensus pattern (108 bp):
ATTAGTTTAACAAAACAATGATATGTTAAGTTAGAATAAATTTTAAATAATAAAATTTCTAACAA
AATTGTATTAAAATTTTTGTTAATTACTCTGATAAAATTTTTG
Found at i:94814459 original size:19 final size:19
Alignment explanation
Indices: 94814437--94814475 Score: 78
Period size: 19 Copynumber: 2.1 Consensus size: 19
94814427 ATGACAGCCT
94814437 TGAGTGGAGAATGATGGCA
1 TGAGTGGAGAATGATGGCA
94814456 TGAGTGGAGAATGATGGCA
1 TGAGTGGAGAATGATGGCA
94814475 T
1 T
94814476 AGGGCTCCTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 20 1.00
ACGTcount: A:0.31, C:0.05, G:0.41, T:0.23
Consensus pattern (19 bp):
TGAGTGGAGAATGATGGCA
Found at i:94818294 original size:19 final size:19
Alignment explanation
Indices: 94818272--94818326 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
94818262 TAATTTTATC
*
94818272 AAAACATATTAAAATTCCT
1 AAAACATATTAAAATTCAT
* * *
94818291 AAAACTTATAAAAAATCAT
1 AAAACATATTAAAATTCAT
*
94818310 AAAAAATTATTAAAATT
1 AAAACA-TATTAAAATT
94818327 GCCATAAACT
Statistics
Matches: 27, Mismatches: 8, Indels: 1
0.75 0.22 0.03
Matches are distributed among these distances:
19 19 0.70
20 8 0.30
ACGTcount: A:0.60, C:0.09, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAACATATTAAAATTCAT
Found at i:94818304 original size:10 final size:10
Alignment explanation
Indices: 94818291--94818355 Score: 51
Period size: 10 Copynumber: 6.5 Consensus size: 10
94818281 TAAAATTCCT
*
94818291 AAAACTTATA
1 AAAAATTATA
*
94818301 AAAAATCATA
1 AAAAATTATA
94818311 AAAAATTAT-
1 AAAAATTATA
* **
94818320 TAAAATTGCCA
1 AAAAATT-ATA
* *
94818331 TAAACTTATA
1 AAAAATTATA
94818341 AAAAATTATA
1 AAAAATTATA
94818351 AAAAA
1 AAAAA
94818356 AAGATCATAA
Statistics
Matches: 42, Mismatches: 11, Indels: 4
0.74 0.19 0.07
Matches are distributed among these distances:
9 6 0.14
10 30 0.71
11 6 0.14
ACGTcount: A:0.63, C:0.08, G:0.02, T:0.28
Consensus pattern (10 bp):
AAAAATTATA
Found at i:94818341 original size:40 final size:39
Alignment explanation
Indices: 94818278--94818355 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 39
94818268 TATCAAAACA
94818278 TATTAAAATTCCTAAAACTTATAAAAAATCATAAAAAAT
1 TATTAAAATTCCTAAAACTTATAAAAAATCATAAAAAAT
*
94818317 TATTAAAATTGCC-ATAAACTTATAAAAAATTATAAAAAA
1 TATTAAAATT-CCTA-AAACTTATAAAAAATCATAAAAAA
94818356 AAGATCATAA
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
39 11 0.31
40 25 0.69
ACGTcount: A:0.59, C:0.09, G:0.01, T:0.31
Consensus pattern (39 bp):
TATTAAAATTCCTAAAACTTATAAAAAATCATAAAAAAT
Found at i:94818984 original size:10 final size:9
Alignment explanation
Indices: 94818960--94819368 Score: 87
Period size: 10 Copynumber: 43.4 Consensus size: 9
94818950 TTTTTTATTA
*
94818960 TTTATTATT
1 TTTATAATT
94818969 TATTATAAGTT
1 T-TTATAA-TT
*
94818980 TTTATGAATG
1 TTTAT-AATT
94818990 TTTATAAATAT
1 TTTAT-AAT-T
94819001 TTTATAAGATT
1 TTTAT-A-ATT
* *
94819012 TTAAAAATAT
1 TTTATAAT-T
94819022 TTTAATAA-T
1 TTT-ATAATT
* *
94819031 TTCATAAAGT
1 TTTAT-AATT
94819041 TTTATTAATT
1 TTTA-TAATT
*
94819051 TATTAGAATTTT
1 T-TTATAA--TT
*
94819063 TTTATAATA
1 TTTATAATT
94819072 TTTATAAGTT
1 TTTATAA-TT
* *
94819082 TTTGTGATTT
1 TTTAT-AATT
94819092 TTTAATAATT
1 TTT-ATAATT
94819102 TTTATAAGTT
1 TTTATAA-TT
*
94819112 TATATGAATT
1 TTTAT-AATT
*
94819122 TTAAT-A-T
1 TTTATAATT
94819129 TTT-TAATAT
1 TTTATAAT-T
**
94819138 TAAATAATAT
1 TTTATAAT-T
** *
94819148 TAAATATTT
1 TTTATAATT
*
94819157 TTTATGATT
1 TTTATAATT
*
94819166 TTTAT-TTT
1 TTTATAATT
*
94819174 TTTATAAGT
1 TTTATAATT
*
94819183 TTTAAAGATT
1 TTTATA-ATT
* *
94819193 TTTTTACGTT
1 TTTATA-ATT
*
94819203 TTTATAAACT
1 TTTAT-AATT
**
94819213 TTTA-AAAA
1 TTTATAATT
94819221 TTTA-AATAT
1 TTTATAAT-T
94819230 GTTTATTAA-T
1 -TTTA-TAATT
*
94819240 TTTAAAATTT
1 TTTATAA-TT
94819250 TTTATAATT
1 TTTATAATT
*
94819259 TGTTAGAATT
1 T-TTATAATT
94819269 TATTAT-A-T
1 T-TTATAATT
94819277 TTT-T-ATT
1 TTTATAATT
*
94819284 TTTATAATA
1 TTTATAATT
94819293 TTTATAAGTT
1 TTTATAA-TT
*
94819303 TTTATTATT
1 TTTATAATT
**
94819312 TTTATAAGA
1 TTTATAATT
*
94819321 TATATTAA--
1 TTTA-TAATT
94819329 TTTAGT-ATT
1 TTTA-TAATT
94819338 TTTA-AATAT
1 TTTATAAT-T
94819347 TTT-TAATT
1 TTTATAATT
94819355 TTTAATAATT
1 TTT-ATAATT
94819365 TTTA
1 TTTA
94819369 ATTTTTGTTT
Statistics
Matches: 296, Mismatches: 60, Indels: 88
0.67 0.14 0.20
Matches are distributed among these distances:
6 3 0.01
7 11 0.04
8 33 0.11
9 79 0.27
10 130 0.44
11 33 0.11
12 7 0.02
ACGTcount: A:0.35, C:0.01, G:0.05, T:0.59
Consensus pattern (9 bp):
TTTATAATT
Found at i:94819083 original size:19 final size:19
Alignment explanation
Indices: 94818971--94819084 Score: 52
Period size: 21 Copynumber: 5.6 Consensus size: 19
94818961 TTATTATTTA
*
94818971 TTATAAGTTTTTATGAATGT
1 TTATAAGTTTTTAT-AATAT
* *
94818991 TTATAAATATTTTATAAGATT
1 TTATAAGT-TTTTATAATA-T
* *
94819012 TTAAAAATATTTTAATAAT-T
1 TTATAAGT-TTTT-ATAATAT
* *
94819032 TCATAAAG-TTTTATTAATTT
1 TTAT-AAGTTTTTA-TAATAT
* *
94819052 ATTAGAATTTTTTTATAATAT
1 -TTATAA-GTTTTTATAATAT
94819073 TTATAAGTTTTT
1 TTATAAGTTTTT
94819085 GTGATTTTTT
Statistics
Matches: 71, Mismatches: 14, Indels: 19
0.68 0.13 0.18
Matches are distributed among these distances:
18 1 0.01
19 13 0.18
20 20 0.28
21 28 0.39
22 9 0.13
ACGTcount: A:0.38, C:0.01, G:0.06, T:0.55
Consensus pattern (19 bp):
TTATAAGTTTTTATAATAT
Found at i:94819287 original size:17 final size:18
Alignment explanation
Indices: 94819267--94819315 Score: 57
Period size: 17 Copynumber: 2.8 Consensus size: 18
94819257 TTTGTTAGAA
*
94819267 TTTATTATATTTTTA-TT
1 TTTATTATATTTTAAGTT
*
94819284 TTTATAATATTTATAAGTT
1 TTTATTATATTT-TAAGTT
94819303 TTTATTAT-TTTTA
1 TTTATTATATTTTA
94819316 TAAGATATAT
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
17 13 0.48
18 5 0.19
19 9 0.33
ACGTcount: A:0.29, C:0.00, G:0.02, T:0.69
Consensus pattern (18 bp):
TTTATTATATTTTAAGTT
Found at i:94819291 original size:34 final size:34
Alignment explanation
Indices: 94819248--94819316 Score: 88
Period size: 34 Copynumber: 2.0 Consensus size: 34
94819238 ATTTTAAAAT
*
94819248 TTTTTATAATTTGTTAGAA-TTTATTA-TATTTTTA
1 TTTTTATAATAT-TTAGAAGTTT-TTATTATTTTTA
*
94819282 TTTTTATAATATTTATAAGTTTTTATTATTTTTA
1 TTTTTATAATATTTAGAAGTTTTTATTATTTTTA
94819316 T
1 T
94819317 AAGATATATT
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
33 8 0.26
34 23 0.74
ACGTcount: A:0.29, C:0.00, G:0.04, T:0.67
Consensus pattern (34 bp):
TTTTTATAATATTTAGAAGTTTTTATTATTTTTA
Found at i:94819306 original size:19 final size:19
Alignment explanation
Indices: 94819282--94819319 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
94819272 TATATTTTTA
94819282 TTTTTATAATATTTATAAG
1 TTTTTATAATATTTATAAG
* *
94819301 TTTTTATTATTTTTATAAG
1 TTTTTATAATATTTATAAG
94819320 ATATATTAAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.00, G:0.05, T:0.63
Consensus pattern (19 bp):
TTTTTATAATATTTATAAG
Found at i:94819355 original size:17 final size:17
Alignment explanation
Indices: 94819335--94819374 Score: 64
Period size: 17 Copynumber: 2.4 Consensus size: 17
94819325 TTAATTTAGT
94819335 ATTTTTAA-ATATTTTTA
1 ATTTTTAATA-ATTTTTA
94819352 ATTTTTAATAATTTTTA
1 ATTTTTAATAATTTTTA
94819369 ATTTTT
1 ATTTTT
94819375 GTTTTGATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
17 21 0.95
18 1 0.05
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.68
Consensus pattern (17 bp):
ATTTTTAATAATTTTTA
Found at i:94819562 original size:16 final size:16
Alignment explanation
Indices: 94819541--94819594 Score: 81
Period size: 16 Copynumber: 3.4 Consensus size: 16
94819531 TTGGGTTCGC
94819541 TATAATAGAATAGAGT
1 TATAATAGAATAGAGT
*
94819557 TATAATGGAATAGAGT
1 TATAATAGAATAGAGT
*
94819573 TATAATATAATAGAGT
1 TATAATAGAATAGAGT
*
94819589 TGTAAT
1 TATAAT
94819595 CAGTAATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.46, C:0.00, G:0.19, T:0.35
Consensus pattern (16 bp):
TATAATAGAATAGAGT
Found at i:94819796 original size:15 final size:15
Alignment explanation
Indices: 94819776--94819807 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
94819766 TAGGATTATT
94819776 ATAAAAAATAATTTA
1 ATAAAAAATAATTTA
94819791 ATAAAAAATAATTTA
1 ATAAAAAATAATTTA
94819806 AT
1 AT
94819808 CATATTTTAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (15 bp):
ATAAAAAATAATTTA
Found at i:94819892 original size:15 final size:15
Alignment explanation
Indices: 94819874--94819906 Score: 50
Period size: 15 Copynumber: 2.2 Consensus size: 15
94819864 AATTTAATCA
94819874 TATTTTTA-ATATAAT
1 TATTTTTATAT-TAAT
94819889 TATTTTTATATTAAT
1 TATTTTTATATTAAT
94819904 TAT
1 TAT
94819907 ATTAAAATAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 15 0.88
16 2 0.12
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (15 bp):
TATTTTTATATTAAT
Found at i:94819921 original size:15 final size:15
Alignment explanation
Indices: 94819903--94819953 Score: 50
Period size: 15 Copynumber: 3.3 Consensus size: 15
94819893 TTTATATTAA
94819903 TTATATTAAAATATT
1 TTATATTAAAATATT
*
94819918 TTATTTTAAATTATATT
1 TTATATTAAA--ATATT
*
94819935 TTGAAATT-AAATATT
1 TT-ATATTAAAATATT
94819950 TTAT
1 TTAT
94819954 TTTCAAATTC
Statistics
Matches: 29, Mismatches: 4, Indels: 7
0.73 0.10 0.17
Matches are distributed among these distances:
14 1 0.03
15 16 0.55
17 9 0.31
18 3 0.10
ACGTcount: A:0.41, C:0.00, G:0.02, T:0.57
Consensus pattern (15 bp):
TTATATTAAAATATT
Found at i:94837960 original size:39 final size:39
Alignment explanation
Indices: 94837901--94837980 Score: 142
Period size: 39 Copynumber: 2.1 Consensus size: 39
94837891 AAGATAGTTA
*
94837901 ATGCCCAACCTAAAATATATCAGCTGGAAACACAAAAAT
1 ATGCCCAACCTAAAAGATATCAGCTGGAAACACAAAAAT
*
94837940 ATGCCCAACCTAAAAGATATCAGTTGGAAACACAAAAAT
1 ATGCCCAACCTAAAAGATATCAGCTGGAAACACAAAAAT
94837979 AT
1 AT
94837981 ACACACTTTT
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
39 39 1.00
ACGTcount: A:0.49, C:0.21, G:0.11, T:0.19
Consensus pattern (39 bp):
ATGCCCAACCTAAAAGATATCAGCTGGAAACACAAAAAT
Found at i:94838975 original size:21 final size:20
Alignment explanation
Indices: 94838930--94838975 Score: 51
Period size: 21 Copynumber: 2.3 Consensus size: 20
94838920 TTGTTGGAAT
94838930 GGTT-AATTTAATCAATTTA
1 GGTTGAATTTAATCAATTTA
*
94838949 GCTTGAATTTAATTC-ATGTTA
1 GGTTGAATTTAA-TCAAT-TTA
94838970 GGTTGA
1 GGTTGA
94838976 TTGCATTTCA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 3 0.14
20 9 0.41
21 10 0.45
ACGTcount: A:0.30, C:0.07, G:0.17, T:0.46
Consensus pattern (20 bp):
GGTTGAATTTAATCAATTTA
Found at i:94847343 original size:4 final size:4
Alignment explanation
Indices: 94847334--94847359 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
94847324 ATAATAAAGG
94847334 AATA AATA AATA AATA AATA AATA AA
1 AATA AATA AATA AATA AATA AATA AA
94847360 AAGGAAGGGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.77, C:0.00, G:0.00, T:0.23
Consensus pattern (4 bp):
AATA
Found at i:94848243 original size:57 final size:57
Alignment explanation
Indices: 94848150--94848263 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
94848140 CCGTGTGGGT
* *
94848150 TACATGACCGTGTCGCCTGGCCGTGTAACTCTTTGTCGATTTCTTCAAAATTCAAAA
1 TACACGACCGTGTCGCCTGGCCATGTAACTCTTTGTCGATTTCTTCAAAATTCAAAA
94848207 TACACGACCGTGTCGCCTGGCCATGTAACTCTTTGTCGATTTCTTCAAAATTCAAAA
1 TACACGACCGTGTCGCCTGGCCATGTAACTCTTTGTCGATTTCTTCAAAATTCAAAA
94848264 CTAACTCAAA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.25, C:0.25, G:0.17, T:0.32
Consensus pattern (57 bp):
TACACGACCGTGTCGCCTGGCCATGTAACTCTTTGTCGATTTCTTCAAAATTCAAAA
Found at i:94862430 original size:20 final size:20
Alignment explanation
Indices: 94862405--94862453 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
94862395 TGTGCTCAGC
94862405 CCGTGTGGAAATAGTTTTGG
1 CCGTGTGGAAATAGTTTTGG
94862425 CCGTGTGGAAATAGTTTTGG
1 CCGTGTGGAAATAGTTTTGG
94862445 CCGTGTGGA
1 CCGTGTGGA
94862454 TCTTTAAATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.18, C:0.12, G:0.37, T:0.33
Consensus pattern (20 bp):
CCGTGTGGAAATAGTTTTGG
Found at i:94863111 original size:12 final size:10
Alignment explanation
Indices: 94863085--94863109 Score: 50
Period size: 10 Copynumber: 2.5 Consensus size: 10
94863075 TGAAATTAAA
94863085 ATATAATAGT
1 ATATAATAGT
94863095 ATATAATAGT
1 ATATAATAGT
94863105 ATATA
1 ATATA
94863110 TATTTATCCC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.08, T:0.40
Consensus pattern (10 bp):
ATATAATAGT
Found at i:94865223 original size:47 final size:47
Alignment explanation
Indices: 94865172--94865304 Score: 173
Period size: 46 Copynumber: 2.9 Consensus size: 47
94865162 GAATTATGAG
* *
94865172 GCATCCGAACTCCTTGAGTTGCGTTTCGAGTTCATCTATGGATGC-AA
1 GCATCCGAACTCATTGAGTTGCGTTCCGAGTTCAT-TATGGATGCGAA
* * *
94865219 GCATCCGAACTCATTGAGTTGTGTTCCGAATTCATTATGGATTCGAA
1 GCATCCGAACTCATTGAGTTGCGTTCCGAGTTCATTATGGATGCGAA
*
94865266 -CA-CCTGAGCTCATTGAGTTGCGTTCCGAGTTCATTATGG
1 GCATCC-GAACTCATTGAGTTGCGTTCCGAGTTCATTATGG
94865305 GTGAGATTAT
Statistics
Matches: 76, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
45 2 0.03
46 41 0.54
47 33 0.43
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (47 bp):
GCATCCGAACTCATTGAGTTGCGTTCCGAGTTCATTATGGATGCGAA
Found at i:94866412 original size:45 final size:44
Alignment explanation
Indices: 94866361--94866449 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 44
94866351 CACAAAGCTT
94866361 ACCCCTCCTCTCCATTTCTTTAGTATTGGCAGGTCGGCTCCGGGG
1 ACCCCTCCTCTCCATTTCTTTAGTATTGGCAGGTCGGCT-CGGGG
94866406 ACCCCTCCTCTCCATTTCTTTAGTATTGGCAGGTCGGCTCGGGG
1 ACCCCTCCTCTCCATTTCTTTAGTATTGGCAGGTCGGCTCGGGG
94866450 TTGGAGATCG
Statistics
Matches: 44, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 5 0.11
45 39 0.89
ACGTcount: A:0.11, C:0.33, G:0.25, T:0.31
Consensus pattern (44 bp):
ACCCCTCCTCTCCATTTCTTTAGTATTGGCAGGTCGGCTCGGGG
Found at i:94868569 original size:15 final size:15
Alignment explanation
Indices: 94868549--94868602 Score: 51
Period size: 15 Copynumber: 3.7 Consensus size: 15
94868539 TATCGTATCT
94868549 TGGGTTTCTTTATTC
1 TGGGTTTCTTTATTC
94868564 TGGGTTT-TTCTA-TC
1 TGGGTTTCTT-TATTC
*
94868578 TTGGATTTCTTTATTC
1 -TGGGTTTCTTTATTC
*
94868594 -GGTTTTCTT
1 TGGGTTTCTT
94868603 GTTATCTTTA
Statistics
Matches: 33, Mismatches: 2, Indels: 9
0.75 0.05 0.20
Matches are distributed among these distances:
14 12 0.36
15 17 0.52
16 4 0.12
ACGTcount: A:0.07, C:0.13, G:0.19, T:0.61
Consensus pattern (15 bp):
TGGGTTTCTTTATTC
Found at i:94871119 original size:46 final size:46
Alignment explanation
Indices: 94871001--94871125 Score: 144
Period size: 46 Copynumber: 2.7 Consensus size: 46
94870991 TGAGGCATCT
* * * *
94871001 GAACTCGTTGAGTTGCATTCCGAGTTCACCTATGGATGCAAGCATCC
1 GAACTCGTTGAGTTGCGTTCCGAGTTCA-TTATAGATGCAAGCACCC
* * *
94871048 GAACTCGTTGAGTTGTGTTCAGAGTTCATTATAGATTCGAA-CACCC
1 GAACTCGTTGAGTTGCGTTCCGAGTTCATTATAGATGC-AAGCACCC
* *
94871094 GAGCTCTTTGAGTTGCGTTCCGAGTTCATTAT
1 GAACTCGTTGAGTTGCGTTCCGAGTTCATTAT
94871126 GGGTGAGATT
Statistics
Matches: 66, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
46 39 0.59
47 27 0.41
ACGTcount: A:0.22, C:0.22, G:0.23, T:0.33
Consensus pattern (46 bp):
GAACTCGTTGAGTTGCGTTCCGAGTTCATTATAGATGCAAGCACCC
Found at i:94872238 original size:48 final size:48
Alignment explanation
Indices: 94872167--94872262 Score: 183
Period size: 48 Copynumber: 2.0 Consensus size: 48
94872157 CCTCCTCTCT
94872167 ATTTCTTTAGTATTGGCAGGTCGGCTCCGGGTTGGAGATCGTCGGAGC
1 ATTTCTTTAGTATTGGCAGGTCGGCTCCGGGTTGGAGATCGTCGGAGC
*
94872215 ATTTCTTTAGTATTGGCAGGTCGGCTCGGGGTTGGAGATCGTCGGAGC
1 ATTTCTTTAGTATTGGCAGGTCGGCTCCGGGTTGGAGATCGTCGGAGC
94872263 CAGAATCACA
Statistics
Matches: 47, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 47 1.00
ACGTcount: A:0.15, C:0.18, G:0.36, T:0.31
Consensus pattern (48 bp):
ATTTCTTTAGTATTGGCAGGTCGGCTCCGGGTTGGAGATCGTCGGAGC
Found at i:94875169 original size:18 final size:20
Alignment explanation
Indices: 94875148--94875189 Score: 61
Period size: 18 Copynumber: 2.2 Consensus size: 20
94875138 AATCAATAAA
*
94875148 ATAATTTTTTTATA-T-TTT
1 ATAATTTATTTATAGTGTTT
94875166 ATAATTTATTTATAGTGTTT
1 ATAATTTATTTATAGTGTTT
94875186 ATAA
1 ATAA
94875190 CATGAAATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 13 0.62
19 1 0.05
20 7 0.33
ACGTcount: A:0.33, C:0.00, G:0.05, T:0.62
Consensus pattern (20 bp):
ATAATTTATTTATAGTGTTT
Found at i:94876696 original size:3 final size:3
Alignment explanation
Indices: 94876629--94876682 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
94876619 AATAAGGTGG
* * * * *
94876629 TAA TAA TAA TAC TAA TAA TAA TAA TGA TAA TAG TAA CAA TAA TAT TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
94876677 TAA TAA
1 TAA TAA
94876683 AAGGAGTAAT
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.33
Consensus pattern (3 bp):
TAA
Found at i:94876728 original size:21 final size:21
Alignment explanation
Indices: 94876704--94876761 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
94876694 ATATCAGTAG
*
94876704 TAATAAAAATAGTGATAACAA
1 TAATAAAAATAGTAATAACAA
* * *
94876725 TAATGAAACTAGTAATAATAA
1 TAATAAAAATAGTAATAACAA
*
94876746 TAATAGCAAATAGTAA
1 TAATA-AAAATAGTAA
94876762 GGAATGGTGA
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 21 0.72
22 8 0.28
ACGTcount: A:0.59, C:0.05, G:0.10, T:0.26
Consensus pattern (21 bp):
TAATAAAAATAGTAATAACAA
Found at i:94876888 original size:28 final size:28
Alignment explanation
Indices: 94876830--94876891 Score: 81
Period size: 28 Copynumber: 2.2 Consensus size: 28
94876820 AACGGCAATG
* * *
94876830 ATAATATTAATATTGATAATAAATGATA
1 ATAATATAAACATTGATAATAAATGAAA
94876858 ATAATATAAACATTGATAAT-AATAGAAA
1 ATAATATAAACATTGATAATAAAT-GAAA
94876886 ATAATA
1 ATAATA
94876892 ATGTTAAAAC
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
27 3 0.10
28 27 0.90
ACGTcount: A:0.58, C:0.02, G:0.06, T:0.34
Consensus pattern (28 bp):
ATAATATAAACATTGATAATAAATGAAA
Found at i:94876938 original size:18 final size:17
Alignment explanation
Indices: 94876885--94876946 Score: 61
Period size: 18 Copynumber: 3.4 Consensus size: 17
94876875 AATAATAGAA
94876885 AATAATAATGTTAAAACAT
1 AATAATAATG-TAAAA-AT
** *
94876904 AATAGCAATGGTGAAAAT
1 AATAATAAT-GTAAAAAT
94876922 AATAATAATAGTAAAAAT
1 AATAATAAT-GTAAAAAT
94876940 AATAATA
1 AATAATA
94876947 TGCTAATGAG
Statistics
Matches: 35, Mismatches: 7, Indels: 3
0.78 0.16 0.07
Matches are distributed among these distances:
18 23 0.66
19 11 0.31
20 1 0.03
ACGTcount: A:0.60, C:0.03, G:0.10, T:0.27
Consensus pattern (17 bp):
AATAATAATGTAAAAAT
Found at i:94885738 original size:20 final size:19
Alignment explanation
Indices: 94885710--94885747 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
94885700 AAAAAAAAAT
94885710 ATAGAAAACATATCATATTA
1 ATAGAAAACATATC-TATTA
*
94885730 ATAGCAAACATATCTATT
1 ATAGAAAACATATCTATT
94885748 CAACAATTAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 4 0.24
20 13 0.76
ACGTcount: A:0.50, C:0.13, G:0.05, T:0.32
Consensus pattern (19 bp):
ATAGAAAACATATCTATTA
Found at i:94890010 original size:32 final size:32
Alignment explanation
Indices: 94889972--94890034 Score: 83
Period size: 32 Copynumber: 2.0 Consensus size: 32
94889962 ATTAATCAGT
* * *
94889972 ATGAGTTA-TCAATTTAAATTAATTAATTTATC
1 ATGAGTTATTAAATTCAAA-TAATCAATTTATC
94890004 ATGAGTTATTAAATTCAAATAATCAATTTAT
1 ATGAGTTATTAAATTCAAATAATCAATTTAT
94890035 AAATTTAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
32 19 0.70
33 8 0.30
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.44
Consensus pattern (32 bp):
ATGAGTTATTAAATTCAAATAATCAATTTATC
Found at i:94890173 original size:15 final size:15
Alignment explanation
Indices: 94890153--94890201 Score: 64
Period size: 16 Copynumber: 3.3 Consensus size: 15
94890143 ATTTTATCAA
94890153 AATAATATTTTAATT
1 AATAATATTTTAATT
*
94890168 AATAATATATTTATTT
1 AATAATAT-TTTAATT
*
94890184 AATAA-ATTATAATT
1 AATAATATTTTAATT
94890198 AATA
1 AATA
94890202 GGTTTGCTTA
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
14 9 0.30
15 10 0.33
16 11 0.37
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
AATAATATTTTAATT
Found at i:94895367 original size:21 final size:21
Alignment explanation
Indices: 94895341--94895381 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
94895331 ATCTGCTCAA
* *
94895341 ACTCCACCTGTTTTGGAGTAC
1 ACTCCACCTGCTGTGGAGTAC
94895362 ACTCCACCTGCTGTGGAGTA
1 ACTCCACCTGCTGTGGAGTA
94895382 TTGCTCGTCT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.20, C:0.29, G:0.22, T:0.29
Consensus pattern (21 bp):
ACTCCACCTGCTGTGGAGTAC
Found at i:94898868 original size:17 final size:18
Alignment explanation
Indices: 94898846--94898879 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
94898836 TATATAATAA
94898846 AAATAAA-ATAAAGTTTC
1 AAATAAATATAAAGTTTC
*
94898863 AAATAAATTTAAAGTTT
1 AAATAAATATAAAGTTT
94898880 TATTAATAGA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.56, C:0.03, G:0.06, T:0.35
Consensus pattern (18 bp):
AAATAAATATAAAGTTTC
Found at i:94901493 original size:39 final size:39
Alignment explanation
Indices: 94901439--94901519 Score: 162
Period size: 39 Copynumber: 2.1 Consensus size: 39
94901429 AAAAGAGACT
94901439 AAATTGAAATTCCAGACAAATCTTCACATTTCTTCAGCC
1 AAATTGAAATTCCAGACAAATCTTCACATTTCTTCAGCC
94901478 AAATTGAAATTCCAGACAAATCTTCACATTTCTTCAGCC
1 AAATTGAAATTCCAGACAAATCTTCACATTTCTTCAGCC
94901517 AAA
1 AAA
94901520 AACAGCCATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.30
Consensus pattern (39 bp):
AAATTGAAATTCCAGACAAATCTTCACATTTCTTCAGCC
Found at i:94901786 original size:14 final size:14
Alignment explanation
Indices: 94901767--94901795 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
94901757 TTTATTAAGT
94901767 AAATTCAATAGAAA
1 AAATTCAATAGAAA
94901781 AAATTCAATAGAAA
1 AAATTCAATAGAAA
94901795 A
1 A
94901796 TGATTTTAGG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.66, C:0.07, G:0.07, T:0.21
Consensus pattern (14 bp):
AAATTCAATAGAAA
Found at i:94902523 original size:105 final size:101
Alignment explanation
Indices: 94902337--94902527 Score: 242
Period size: 105 Copynumber: 1.9 Consensus size: 101
94902327 GACAGATAAA
* * *
94902337 ACCATGGTTGGACCATGACAATATTTAAATGTAAGACTATAGCTGGGCTATGGCATTCCAGTGAA
1 ACCATGGTTGGACCATGACAATATTTAAATGTAAGACCATAGATGGGCTATGACATTCCAGTGAA
*
94902402 AAGACGATAACTGGGTTATGGCACCGTGAACGTAAG
66 AAGACCATAACTGGGTTATGGCACCGTGAACGTAAG
* * * *
94902438 ACCATGGTTGGACTATGGCAGTATGTGTACAAGTGTAAGACCATAGATGGGCTATGACA-TCCTG
1 ACCATGGTTGGACCATGACAATAT-T-TA-AA-TGTAAGACCATAGATGGGCTATGACATTCCAG
94902502 ATGATAAA-ACCATAACTGGGTTATGG
62 -TGA-AAAGACCATAACTGGGTTATGG
94902528 AATTACGAGT
Statistics
Matches: 76, Mismatches: 8, Indels: 8
0.83 0.09 0.09
Matches are distributed among these distances:
101 21 0.28
102 1 0.01
103 2 0.03
104 6 0.08
105 43 0.57
106 3 0.04
ACGTcount: A:0.32, C:0.16, G:0.26, T:0.26
Consensus pattern (101 bp):
ACCATGGTTGGACCATGACAATATTTAAATGTAAGACCATAGATGGGCTATGACATTCCAGTGAA
AAGACCATAACTGGGTTATGGCACCGTGAACGTAAG
Found at i:94903256 original size:29 final size:30
Alignment explanation
Indices: 94903209--94903276 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
94903199 TGGTCGAAGA
* *
94903209 GTAAATACTCAAAATTTGAAGGATTAA-AGT
1 GTAAATA-TCAAAAGTTGAAGGACTAATAGT
*
94903239 GTAAATATGAAAAGTTGAAGGACTAATAGT
1 GTAAATATCAAAAGTTGAAGGACTAATAGT
*
94903269 GCAAATAT
1 GTAAATAT
94903277 TTTAAGGGTG
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.47, C:0.06, G:0.19, T:0.28
Consensus pattern (30 bp):
GTAAATATCAAAAGTTGAAGGACTAATAGT
Found at i:94904578 original size:46 final size:46
Alignment explanation
Indices: 94904528--94904696 Score: 232
Period size: 46 Copynumber: 3.7 Consensus size: 46
94904518 TGCCATAGTG
* * * *
94904528 TCTTTCAACTATGGTCTTACTCATTTTC-TGTCATGTTGCCATGGTA
1 TCTTTCAACCATGGTCTTACACA-TTTCATATCATGTTACCATGGTA
*
94904574 TCTTTCAACCATGGTCTTACACATTTCATATCAAGTTACCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTACCATGGTA
* * *
94904620 TCTTTCAACCATGGTTTTACACATTTCATATCAGGCTACCATGGTA
1 TCTTTCAACCATGGTCTTACACATTTCATATCATGTTACCATGGTA
**
94904666 TCTTTCAACCATGGTCTTACGTATTTCATAT
1 TCTTTCAACCATGGTCTTACACATTTCATAT
94904697 TAGAGAGCAC
Statistics
Matches: 111, Mismatches: 11, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
45 4 0.04
46 107 0.96
ACGTcount: A:0.24, C:0.23, G:0.12, T:0.41
Consensus pattern (46 bp):
TCTTTCAACCATGGTCTTACACATTTCATATCATGTTACCATGGTA
Found at i:94906588 original size:39 final size:40
Alignment explanation
Indices: 94906526--94906657 Score: 230
Period size: 40 Copynumber: 3.3 Consensus size: 40
94906516 GACTTATAGT
* *
94906526 CCGCAGGCTTTGTGCTGGCAATAGATATCCAGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
94906566 CCGCAGGC-TTGTGCTGGTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
*
94906605 CCGCAGGCTTTGTGCTGCTAATAGATATCCGGGTTAAATC
1 CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
94906645 CCGCAGGCTTTGT
1 CCGCAGGCTTTGT
94906658 ACTAGAAATT
Statistics
Matches: 88, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
39 37 0.42
40 51 0.58
ACGTcount: A:0.22, C:0.23, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGCAGGCTTTGTGCTGGTAATAGATATCCGGGTTAAATC
Found at i:94908952 original size:30 final size:30
Alignment explanation
Indices: 94908885--94908952 Score: 84
Period size: 30 Copynumber: 2.3 Consensus size: 30
94908875 CACCCTTAAA
* * *
94908885 ATATTTGCACTATTAGTCCTTCAACTTTTC
1 ATATTTACACTATTAATCCTTCAAATTTTC
*
94908915 ATATTTACACT-TTAATCCTTCAAATTTTG
1 ATATTTACACTATTAATCCTTCAAATTTTC
94908944 AGTATTTAC
1 A-TATTTAC
94908953 TCCTGGGCCA
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
29 16 0.48
30 17 0.52
ACGTcount: A:0.28, C:0.19, G:0.06, T:0.47
Consensus pattern (30 bp):
ATATTTACACTATTAATCCTTCAAATTTTC
Found at i:94912775 original size:9 final size:9
Alignment explanation
Indices: 94912763--94912788 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
94912753 AAAAATTAGA
94912763 AAAAAAATT
1 AAAAAAATT
94912772 AAAAAAATT
1 AAAAAAATT
94912781 AAAAAAAT
1 AAAAAAAT
94912789 CTATAAATTT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.81, C:0.00, G:0.00, T:0.19
Consensus pattern (9 bp):
AAAAAAATT
Found at i:94912839 original size:17 final size:17
Alignment explanation
Indices: 94912818--94912867 Score: 57
Period size: 17 Copynumber: 2.9 Consensus size: 17
94912808 TAATAAAAAA
94912818 TAAAATATTAAAAATTAG
1 TAAAA-ATTAAAAATTAG
* *
94912836 AAAAAAATAAAAA-TAG
1 TAAAAATTAAAAATTAG
94912852 TAAAAATTATAAAATT
1 TAAAAATTA-AAAATT
94912868 TTATAAAGTC
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
16 10 0.38
17 11 0.42
18 5 0.19
ACGTcount: A:0.68, C:0.00, G:0.04, T:0.28
Consensus pattern (17 bp):
TAAAAATTAAAAATTAG
Found at i:94912840 original size:25 final size:26
Alignment explanation
Indices: 94912812--94912865 Score: 83
Period size: 26 Copynumber: 2.1 Consensus size: 26
94912802 AAATTTTAAT
*
94912812 AAAAAAT-AAAATATTAAAAATTAGA
1 AAAAAATAAAAATAGTAAAAATTAGA
*
94912837 AAAAAATAAAAATAGTAAAAATTATA
1 AAAAAATAAAAATAGTAAAAATTAGA
94912863 AAA
1 AAA
94912866 TTTTATAAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
25 7 0.27
26 19 0.73
ACGTcount: A:0.74, C:0.00, G:0.04, T:0.22
Consensus pattern (26 bp):
AAAAAATAAAAATAGTAAAAATTAGA
Found at i:94913038 original size:19 final size:20
Alignment explanation
Indices: 94913009--94913046 Score: 60
Period size: 19 Copynumber: 1.9 Consensus size: 20
94912999 AGGTTCATTA
*
94913009 AAAATTTTTATGATTTTTAT
1 AAAATTTTTATAATTTTTAT
94913029 AAAA-TTTTATAATTTTTA
1 AAAATTTTTATAATTTTTA
94913047 CTTTTTTACT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 13 0.76
20 4 0.24
ACGTcount: A:0.39, C:0.00, G:0.03, T:0.58
Consensus pattern (20 bp):
AAAATTTTTATAATTTTTAT
Found at i:94913089 original size:36 final size:38
Alignment explanation
Indices: 94913006--94913100 Score: 94
Period size: 36 Copynumber: 2.6 Consensus size: 38
94912996 TAGAGGTTCA
* **
94913006 TTAAAAATTTTTATGATTTTTATAAAATTTTATAATTT
1 TTAATAATTTTTATGATTTTTATAAAATAATATAATTT
*
94913044 TTACT--TTTTTACT-ATTTTTATAAAA-AAT-TAATTT
1 TTAATAATTTTTA-TGATTTTTATAAAATAATATAATTT
*
94913078 TTAATAATTTTT-TAATTTTTATA
1 TTAATAATTTTTATGATTTTTATA
94913101 TTTTTATTAA
Statistics
Matches: 48, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
34 11 0.23
35 10 0.21
36 23 0.48
37 1 0.02
38 3 0.06
ACGTcount: A:0.37, C:0.02, G:0.01, T:0.60
Consensus pattern (38 bp):
TTAATAATTTTTATGATTTTTATAAAATAATATAATTT
Found at i:94913092 original size:18 final size:19
Alignment explanation
Indices: 94913070--94913120 Score: 61
Period size: 18 Copynumber: 2.8 Consensus size: 19
94913060 TTTATAAAAA
94913070 ATTAATTTTTAATAATTTT
1 ATTAATTTTTAATAATTTT
*
94913089 -TTAATTTTT-ATATTTTT
1 ATTAATTTTTAATAATTTT
**
94913106 ATTAAAATTTAATAA
1 ATTAATTTTTAATAA
94913121 ATTGTCTAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
17 7 0.27
18 16 0.62
19 3 0.12
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (19 bp):
ATTAATTTTTAATAATTTT
Found at i:94913103 original size:26 final size:26
Alignment explanation
Indices: 94913011--94913106 Score: 72
Period size: 27 Copynumber: 3.6 Consensus size: 26
94913001 GTTCATTAAA
* *
94913011 AATTTTTATGATTTTTATAAAATTTTAT
1 AATTTTTAT-ATTTTTA-ATAATTTTTT
*
94913039 AATTTTTACT-TTTTTACT-ATTTTTAT
1 AATTTTTA-TATTTTTAATAATTTTT-T
***
94913065 AAAAAATTA-ATTTTTAATAATTTTTT
1 -AATTTTTATATTTTTAATAATTTTTT
94913091 AATTTTTATATTTTTA
1 AATTTTTATATTTTTA
94913107 TTAAAATTTA
Statistics
Matches: 52, Mismatches: 10, Indels: 14
0.68 0.13 0.18
Matches are distributed among these distances:
25 10 0.19
26 16 0.31
27 17 0.33
28 8 0.15
29 1 0.02
ACGTcount: A:0.34, C:0.02, G:0.01, T:0.62
Consensus pattern (26 bp):
AATTTTTATATTTTTAATAATTTTTT
Found at i:94913104 original size:43 final size:43
Alignment explanation
Indices: 94913033--94913118 Score: 113
Period size: 43 Copynumber: 2.0 Consensus size: 43
94913023 TTTTATAAAA
*
94913033 TTTTATAATTTTTACTTTTTTACTATTTTTATAAAAAATTAAT
1 TTTTATAATTTTTACATTTTTACTATTTTTATAAAAAATTAAT
* *
94913076 TTTTAATAATTTTTTA-ATTTTTA-TATTTTTATTAAAATTTAAT
1 TTTT-ATAA-TTTTTACATTTTTACTATTTTTATAAAAAATTAAT
94913119 AAATTGTCTA
Statistics
Matches: 38, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
43 22 0.58
44 10 0.26
45 6 0.16
ACGTcount: A:0.35, C:0.02, G:0.00, T:0.63
Consensus pattern (43 bp):
TTTTATAATTTTTACATTTTTACTATTTTTATAAAAAATTAAT
Found at i:94938015 original size:46 final size:46
Alignment explanation
Indices: 94937940--94938070 Score: 183
Period size: 46 Copynumber: 2.8 Consensus size: 46
94937930 TCAGGTTATT
* **
94937940 TGTATGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATTA
1 TGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGA
* * *
94937986 TG-AGAGCCAGTGTAAGACATGTCTAGGACATGCATCGGCCTCGCGA
1 TGTA-AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGA
*
94938032 TGTAAGCTAGTGTAAGACATGTCTGGGACATGCATCGGC
1 TGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGC
94938071 TACGAGATGT
Statistics
Matches: 75, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
45 1 0.01
46 73 0.97
47 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.29, T:0.24
Consensus pattern (46 bp):
TGTAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACACGA
Found at i:94940400 original size:49 final size:49
Alignment explanation
Indices: 94940335--94941236 Score: 1640
Period size: 49 Copynumber: 18.6 Consensus size: 49
94940325 TCAAGTCGGT
94940335 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940384 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940433 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940482 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940531 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940580 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940629 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940678 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940727 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940776 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940825 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940874 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940923 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94940972 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94941021 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
94941070 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
* * ** *
94941119 GCCATGTCCCAGACATGGTCTTACACTAAC-A--CATCTCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
* ** ** *
94941165 G-CATGTCCCAGACAT-GTCTTACACTGGCT-TACATCTCGAGGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
*
94941211 G-CATGTCCTAGACAT-GTCTTACACTG
1 GCCATGTCCCAGACATGGTCTTACACTG
94941237 GCACACAAAT
Statistics
Matches: 842, Mismatches: 8, Indels: 9
0.98 0.01 0.01
Matches are distributed among these distances:
44 11 0.01
45 14 0.02
46 52 0.06
48 1 0.00
49 764 0.91
ACGTcount: A:0.26, C:0.29, G:0.22, T:0.23
Consensus pattern (49 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATTGAAATCGAGGCCGAC
Found at i:94942324 original size:20 final size:21
Alignment explanation
Indices: 94942286--94942324 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 21
94942276 TTATAATAAC
94942286 CACACGGGCGTGTTGCCCTTT
1 CACACGGGCGTGTTGCCCTTT
94942307 CACACGGGCGTG-TGCCCT
1 CACACGGGCGTGTTGCCCT
94942325 ATTTTAAGAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 6 0.33
21 12 0.67
ACGTcount: A:0.10, C:0.36, G:0.31, T:0.23
Consensus pattern (21 bp):
CACACGGGCGTGTTGCCCTTT
Found at i:94944783 original size:30 final size:30
Alignment explanation
Indices: 94944698--94944785 Score: 90
Period size: 30 Copynumber: 2.9 Consensus size: 30
94944688 TGAGCTAAAA
* *
94944698 TGAGCTAAGCTTTAGC-CCTTAAGCTAAAGT
1 TGAGCTAAGATTTAGCTCC-TAAGCTGAAGT
*
94944728 TGAGCTGAGATTATA-CTCCTAAGCTGAAGT
1 TGAGCTAAGATT-TAGCTCCTAAGCTGAAGT
* * *
94944758 TGAGCTAAGGTTTAGCTCGTGAGCTGAA
1 TGAGCTAAGATTTAGCTCCTAAGCTGAA
94944786 TATAAGCTAG
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
29 2 0.04
30 42 0.88
31 4 0.08
ACGTcount: A:0.28, C:0.17, G:0.25, T:0.30
Consensus pattern (30 bp):
TGAGCTAAGATTTAGCTCCTAAGCTGAAGT
Found at i:94950057 original size:43 final size:43
Alignment explanation
Indices: 94949902--94950058 Score: 151
Period size: 43 Copynumber: 3.7 Consensus size: 43
94949892 TGTGTTTTCG
* *
94949902 TGTAAGACCACGTC-TGAGACATTGGCATTGA-ATTATGATTTACG
1 TGTAAGACCACGTCTTG-GACATTGGCATCGATATT-TGA-TTACA
* * * * *
94949946 TGTAAGACCATGTCTAGGACATCGACATC-ATATTTGATTTCA
1 TGTAAGACCACGTCTTGGACATTGGCATCGATATTTGATTACA
* * *
94949988 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGGTTACA
1 TGTAAGACCAC-GTCTTGGACATTGGCATCGATATTTGATTACA
*
94950031 TGTAAGACCACGTCTTGGACGTTGGCAT
1 TGTAAGACCACGTCTTGGACATTGGCAT
94950059 TGTATGAGCT
Statistics
Matches: 91, Mismatches: 17, Indels: 11
0.76 0.14 0.09
Matches are distributed among these distances:
42 26 0.29
43 38 0.42
44 26 0.29
45 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (43 bp):
TGTAAGACCACGTCTTGGACATTGGCATCGATATTTGATTACA
Found at i:94954297 original size:50 final size:50
Alignment explanation
Indices: 94954181--94954462 Score: 244
Period size: 50 Copynumber: 5.6 Consensus size: 50
94954171 CTGGTACGCA
* * * *
94954181 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCAATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACACG
* *
94954230 TAGTAGCCTGCACTTAGTATTACACATGTGACCTAACCATCTATTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACACG
* * *** *** ** ** *
94954280 TAGTAGCCTGCACTTAGTACTGCACACGTGATAGAAGTTGTCGGGTATGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAA-CCATCTAGTACACG
* * *
94954331 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACACG
* * * * *
94954381 TAGTAGCCTGCACTTACTACTACATACGTGACCTAAAACCATCTTA-AACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATC-TAGTACACG
** *
94954433 TAGTAGCCTGTTCATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
94954463 TTCTCACAAT
Statistics
Matches: 182, Mismatches: 46, Indels: 7
0.77 0.20 0.03
Matches are distributed among these distances:
49 31 0.17
50 81 0.45
51 35 0.19
52 34 0.19
53 1 0.01
ACGTcount: A:0.30, C:0.26, G:0.17, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTAGTACACG
Found at i:94954355 original size:101 final size:101
Alignment explanation
Indices: 94954230--94954411 Score: 292
Period size: 101 Copynumber: 1.8 Consensus size: 101
94954220 CCAATACACG
* * *
94954230 TAGTAGCCTGCACTTAGTATTACACATGTGACCTAACCATCTATTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTAGTACACGTAGTAGCCTGCACTT
* *
94954295 AGTACTGCACACGTGATAGAAGTTGTCGGGTATGCA
66 ACTACTACACACGTGATAGAAGTTGTCGGGTATGCA
* *
94954331 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCTGGTACACGTAGTAGCCTGCACTT
1 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTAGTACACGTAGTAGCCTGCACTT
*
94954396 ACTACTACATACGTGA
66 ACTACTACACACGTGA
94954412 CCTAAAACCA
Statistics
Matches: 73, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
101 73 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.28
Consensus pattern (101 bp):
TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCTAGTACACGTAGTAGCCTGCACTT
ACTACTACACACGTGATAGAAGTTGTCGGGTATGCA
Found at i:94974581 original size:23 final size:23
Alignment explanation
Indices: 94974555--94974602 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
94974545 ATACCCCTGT
94974555 ATAACCCACATTAACTAGATGGC
1 ATAACCCACATTAACTAGATGGC
94974578 ATAACCCACATTAACTAGATGGC
1 ATAACCCACATTAACTAGATGGC
94974601 AT
1 AT
94974603 TCCTTTAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.40, C:0.25, G:0.12, T:0.23
Consensus pattern (23 bp):
ATAACCCACATTAACTAGATGGC
Found at i:94978631 original size:6 final size:6
Alignment explanation
Indices: 94978620--94978654 Score: 61
Period size: 6 Copynumber: 5.8 Consensus size: 6
94978610 CCTTCTACTA
*
94978620 TATATC TATATC TATATC TATATC TATATA TATAT
1 TATATC TATATC TATATC TATATC TATATC TATAT
94978655 TTCAGCTACC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 28 1.00
ACGTcount: A:0.37, C:0.11, G:0.00, T:0.51
Consensus pattern (6 bp):
TATATC
Found at i:94983770 original size:20 final size:21
Alignment explanation
Indices: 94983742--94983792 Score: 61
Period size: 20 Copynumber: 2.4 Consensus size: 21
94983732 ATAAAATTTA
94983742 ATTAGAATATATAAAT-TATATT
1 ATTA-AATATATAAATATA-ATT
*
94983764 -TTAAATATTTAAATATAATT
1 ATTAAATATATAAATATAATT
94983784 ATTAAATAT
1 ATTAAATAT
94983793 TTGTAATTAG
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
20 13 0.50
21 13 0.50
ACGTcount: A:0.51, C:0.00, G:0.02, T:0.47
Consensus pattern (21 bp):
ATTAAATATATAAATATAATT
Found at i:94983790 original size:21 final size:21
Alignment explanation
Indices: 94983742--94983794 Score: 65
Period size: 21 Copynumber: 2.5 Consensus size: 21
94983732 ATAAAATTTA
*
94983742 ATTAGAATATATAAATTATATT
1 ATTA-AATATTTAAATTATATT
94983764 -TTAAATATTTAAA-TATAATT
1 ATTAAATATTTAAATTAT-ATT
94983784 ATTAAATATTT
1 ATTAAATATTT
94983795 GTAATTAGAT
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
19 3 0.11
20 12 0.43
21 13 0.46
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (21 bp):
ATTAAATATTTAAATTATATT
Found at i:94983790 original size:33 final size:30
Alignment explanation
Indices: 94983718--94983794 Score: 77
Period size: 33 Copynumber: 2.5 Consensus size: 30
94983708 CTAAGCAATT
*
94983718 AATATT-AATTATTTATAAAATTTAATTAG
1 AATATTAAATTATTTATAAAATTTAAATAG
* *
94983747 AATATATAAATTATATTTTAAATATTTAAATAT
1 AATAT-TAAATTAT-TTATAAA-ATTTAAATAG
94983780 AATTATTAAA-TATTT
1 AA-TATTAAATTATTT
94983795 GTAATTAGAT
Statistics
Matches: 40, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
29 5 0.12
30 1 0.03
31 8 0.20
32 9 0.22
33 14 0.35
34 3 0.08
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (30 bp):
AATATTAAATTATTTATAAAATTTAAATAG
Found at i:94990654 original size:45 final size:44
Alignment explanation
Indices: 94990560--94990719 Score: 178
Period size: 45 Copynumber: 3.6 Consensus size: 44
94990550 CCGACATTTC
* * * * *
94990560 GCCTGCTAGGCTCGAGGCCCGATTA-TCATTTCACCAGCATTATA
1 GCCTGCTAGGCTCAAAGCCCGAATAGT-ATTTCACCGGCATCATA
* *
94990604 GCCTGCTAGGCTCGAAAGCTCGAATAGTATCTCACCGGCATCATA
1 GCCTGCTAGGCTC-AAAGCCCGAATAGTATTTCACCGGCATCATA
*
94990649 GCCTGCTAGGCTCAAAGGCCCGAATAGTATTTCACTGGCATCATA
1 GCCTGCTAGGCTCAAA-GCCCGAATAGTATTTCACCGGCATCATA
* * *
94990694 GTCTGCAAGGCTCAAAGGCCCAAATA
1 GCCTGCTAGGCTCAAA-GCCCGAATA
94990720 ATCAAATCAA
Statistics
Matches: 100, Mismatches: 13, Indels: 5
0.85 0.11 0.04
Matches are distributed among these distances:
44 16 0.16
45 83 0.83
46 1 0.01
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (44 bp):
GCCTGCTAGGCTCAAAGCCCGAATAGTATTTCACCGGCATCATA
Found at i:94992994 original size:106 final size:106
Alignment explanation
Indices: 94992809--94993013 Score: 374
Period size: 106 Copynumber: 1.9 Consensus size: 106
94992799 TCACTACGAA
*
94992809 TCAAATTTCTCATTGTACAAAATTCAAAATATGTTCTAGTTTATTTAATTTGAAACTAGACTCAT
1 TCAAATTTCTCATTGTACAAAATTCAAAATATGTCCTAGTTTATTTAATTTGAAACTAGACTCAT
94992874 TAAAGAGTCTAAGCATATAAACTTCACCTTATAAACTATGT
66 TAAAGAGTCTAAGCATATAAACTTCACCTTATAAACTATGT
*
94992915 TCAAATTTCTCATTGTACAAAATTCAAAATATGTCCTAGTTTATTTAATTTGAACCTAGACTCAT
1 TCAAATTTCTCATTGTACAAAATTCAAAATATGTCCTAGTTTATTTAATTTGAAACTAGACTCAT
* *
94992980 TAAGGAGTCTAAGCATATAAACTTCATCTTATAA
66 TAAAGAGTCTAAGCATATAAACTTCACCTTATAA
94993014 CAATTTTTGT
Statistics
Matches: 95, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
106 95 1.00
ACGTcount: A:0.38, C:0.16, G:0.09, T:0.38
Consensus pattern (106 bp):
TCAAATTTCTCATTGTACAAAATTCAAAATATGTCCTAGTTTATTTAATTTGAAACTAGACTCAT
TAAAGAGTCTAAGCATATAAACTTCACCTTATAAACTATGT
Found at i:94997828 original size:80 final size:80
Alignment explanation
Indices: 94997736--94997895 Score: 275
Period size: 80 Copynumber: 2.0 Consensus size: 80
94997726 AATGATTATA
* *
94997736 ATGATTATGTTGATGATAAATGTTATGTTATACGTGTGTATATATGGAAGTCAAATTTTGAGGCT
1 ATGATTATGTTGATGATAAATGTTACGTTATACGTGTGTATATATGAAAGTCAAATTTTGAGGCT
*
94997801 TTACGACTTTCATGC
66 TTACGACCTTCATGC
* *
94997816 ATGATTATGTTGATGATAAATGTTACGTTATACGTGTGTCTATATGAAAGTTAAATTTTGAGGCT
1 ATGATTATGTTGATGATAAATGTTACGTTATACGTGTGTATATATGAAAGTCAAATTTTGAGGCT
94997881 TTACGACCTTCATGC
66 TTACGACCTTCATGC
94997896 CTTCACCTGT
Statistics
Matches: 75, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
80 75 1.00
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.41
Consensus pattern (80 bp):
ATGATTATGTTGATGATAAATGTTACGTTATACGTGTGTATATATGAAAGTCAAATTTTGAGGCT
TTACGACCTTCATGC
Found at i:95001102 original size:5 final size:6
Alignment explanation
Indices: 95001084--95001120 Score: 56
Period size: 6 Copynumber: 6.2 Consensus size: 6
95001074 TTGTTTCATC
* *
95001084 TTATTT TTATTT TTATTT TTATGT TCATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT T
95001121 CTTAGACTTA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 27 1.00
ACGTcount: A:0.16, C:0.03, G:0.03, T:0.78
Consensus pattern (6 bp):
TTATTT
Found at i:95005991 original size:28 final size:28
Alignment explanation
Indices: 95005943--95006033 Score: 121
Period size: 28 Copynumber: 3.2 Consensus size: 28
95005933 GTGACAGAGT
*
95005943 CACCAGATACAGATATTTTGTGGCAGTGC
1 CACCAGA-ACAGATAATTTGTGGCAGTGC
*
95005972 CACCAGAACAGATAATTTGTGGCAGGGC
1 CACCAGAACAGATAATTTGTGGCAGTGC
* *
95006000 CACCAGAATAGATAATTTATGGCA-TAGC
1 CACCAGAACAGATAATTTGTGGCAGT-GC
95006028 CACCAG
1 CACCAG
95006034 GACGCTTCCT
Statistics
Matches: 56, Mismatches: 5, Indels: 3
0.88 0.08 0.05
Matches are distributed among these distances:
28 49 0.88
29 7 0.12
ACGTcount: A:0.33, C:0.22, G:0.23, T:0.22
Consensus pattern (28 bp):
CACCAGAACAGATAATTTGTGGCAGTGC
Found at i:95006178 original size:27 final size:29
Alignment explanation
Indices: 95006141--95006202 Score: 92
Period size: 28 Copynumber: 2.2 Consensus size: 29
95006131 ATTAACCCTA
*
95006141 GGGTATAAAT-GTCATTTAGCATACATAG
1 GGGTATAAATGGTAATTTAGCATACATAG
*
95006169 GGGTAT-AATGGTAATTTTGCATACATAG
1 GGGTATAAATGGTAATTTAGCATACATAG
95006197 GGGTAT
1 GGGTAT
95006203 TCTAGTAAAT
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
27 3 0.10
28 28 0.90
ACGTcount: A:0.32, C:0.08, G:0.26, T:0.34
Consensus pattern (29 bp):
GGGTATAAATGGTAATTTAGCATACATAG
Found at i:95014535 original size:6 final size:6
Alignment explanation
Indices: 95014524--95014560 Score: 65
Period size: 6 Copynumber: 6.2 Consensus size: 6
95014514 TTGTTTCCTC
*
95014524 TTATTT TTATTT TTATTT TTATGT TTATTT TTATTT T
1 TTATTT TTATTT TTATTT TTATTT TTATTT TTATTT T
95014561 CTTAGACTTA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 29 1.00
ACGTcount: A:0.16, C:0.00, G:0.03, T:0.81
Consensus pattern (6 bp):
TTATTT
Found at i:95018874 original size:20 final size:20
Alignment explanation
Indices: 95018849--95018890 Score: 84
Period size: 20 Copynumber: 2.1 Consensus size: 20
95018839 CAATTTTAAT
95018849 GTTCATTCTTCTTGACTGTA
1 GTTCATTCTTCTTGACTGTA
95018869 GTTCATTCTTCTTGACTGTA
1 GTTCATTCTTCTTGACTGTA
95018889 GT
1 GT
95018891 CTTACTTTAC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.14, C:0.19, G:0.17, T:0.50
Consensus pattern (20 bp):
GTTCATTCTTCTTGACTGTA
Found at i:95034895 original size:49 final size:49
Alignment explanation
Indices: 95034838--95034936 Score: 189
Period size: 49 Copynumber: 2.0 Consensus size: 49
95034828 TTTGTAAAAG
95034838 TATGATTTTTGGGTCAATTTGATTAATATGAGTAATAAATATGTTATAT
1 TATGATTTTTGGGTCAATTTGATTAATATGAGTAATAAATATGTTATAT
*
95034887 TATGATTTTTGGGTCAATTTGATTAATGTGAGTAATAAATATGTTATAT
1 TATGATTTTTGGGTCAATTTGATTAATATGAGTAATAAATATGTTATAT
95034936 T
1 T
95034937 TGAAATGTTA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.33, C:0.02, G:0.17, T:0.47
Consensus pattern (49 bp):
TATGATTTTTGGGTCAATTTGATTAATATGAGTAATAAATATGTTATAT
Found at i:95035481 original size:18 final size:18
Alignment explanation
Indices: 95035460--95035521 Score: 52
Period size: 18 Copynumber: 3.1 Consensus size: 18
95035450 AAGTCCGAAC
95035460 TCGTTGAGTGGTCCGAGT
1 TCGTTGAGTGGTCCGAGT
*
95035478 TCGTGATATATGTGGCATCCGAGT
1 TCGT--T-GA-GTGG--TCCGAGT
*
95035502 TTGTTGAGTGGTCCGAGT
1 TCGTTGAGTGGTCCGAGT
95035520 TC
1 TC
95035522 ATAATGGATG
Statistics
Matches: 34, Mismatches: 4, Indels: 12
0.68 0.08 0.24
Matches are distributed among these distances:
18 12 0.35
20 5 0.15
21 2 0.06
22 5 0.15
24 10 0.29
ACGTcount: A:0.15, C:0.16, G:0.34, T:0.35
Consensus pattern (18 bp):
TCGTTGAGTGGTCCGAGT
Found at i:95048870 original size:21 final size:22
Alignment explanation
Indices: 95048824--95048873 Score: 66
Period size: 23 Copynumber: 2.2 Consensus size: 22
95048814 TGTATTAATT
*
95048824 CACATAAAAATTTAAAAAGGATCC
1 CACA-AAAAATTGAAAAAGGA-CC
95048848 CACAAAAAATTGAAAAAGG-CC
1 CACAAAAAATTGAAAAAGGACC
95048869 CACAA
1 CACAA
95048874 TTTTTTAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
21 7 0.28
23 14 0.56
24 4 0.16
ACGTcount: A:0.56, C:0.20, G:0.10, T:0.14
Consensus pattern (22 bp):
CACAAAAAATTGAAAAAGGACC
Found at i:95050390 original size:103 final size:102
Alignment explanation
Indices: 95050209--95050413 Score: 340
Period size: 103 Copynumber: 2.0 Consensus size: 102
95050199 CTAAATAAGG
*
95050209 AATGATTCGGGCTTTTTAGAAAATGTTGTAATACTTGCGGTATCTTCTCCATACTTGCTATAAAA
1 AATGAGTCGGGCTTTTTAGAAAATGTTGTAATACTTGCGGTATCTTCTCCATACTTGCTATAAAA
* *
95050274 CAAAATGTGGGATTTTTTTCTCATATTCTTCCATTTTT
66 CAAAATGTCGGA-TTTTCTCTCATATTCTTCCATTTTT
* *
95050312 AATGAGTCGGGCTTTTTAGCAAAATGTTGTAATACTTGCGGTATCTTCTCC-TACTTGTTGTAAA
1 AATGAGTCGGGCTTTTTAG-AAAATGTTGTAATACTTGCGGTATCTTCTCCATACTTGCTATAAA
95050376 ACAAAATGTCGGATTTTCTCTCATATTCTTCCATTTTT
65 ACAAAATGTCGGATTTTCTCTCATATTCTTCCATTTTT
95050414 CTCTTTCACT
Statistics
Matches: 96, Mismatches: 5, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
102 24 0.25
103 41 0.43
104 31 0.32
ACGTcount: A:0.25, C:0.17, G:0.15, T:0.43
Consensus pattern (102 bp):
AATGAGTCGGGCTTTTTAGAAAATGTTGTAATACTTGCGGTATCTTCTCCATACTTGCTATAAAA
CAAAATGTCGGATTTTCTCTCATATTCTTCCATTTTT
Found at i:95054742 original size:43 final size:43
Alignment explanation
Indices: 95054693--95054775 Score: 148
Period size: 43 Copynumber: 1.9 Consensus size: 43
95054683 AGCTTTGTGG
* *
95054693 CTAAATAAATTTATTATTAATAGGCGAAAAGTTAAAACTTTGA
1 CTAAATAAATTTATAATTAAAAGGCGAAAAGTTAAAACTTTGA
95054736 CTAAATAAATTTATAATTAAAAGGCGAAAAGTTAAAACTT
1 CTAAATAAATTTATAATTAAAAGGCGAAAAGTTAAAACTT
95054776 ACTTATAAAT
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
43 38 1.00
ACGTcount: A:0.49, C:0.07, G:0.11, T:0.33
Consensus pattern (43 bp):
CTAAATAAATTTATAATTAAAAGGCGAAAAGTTAAAACTTTGA
Found at i:95060421 original size:117 final size:116
Alignment explanation
Indices: 95060208--95060421 Score: 302
Period size: 117 Copynumber: 1.8 Consensus size: 116
95060198 ACTTTGCGGC
* * *
95060208 TAAAGATGAATTGACAGATAAGACCATAATTGGGTTATGGCATTATAAACATAAGACCATGGTTA
1 TAAAGATGAATTGACAGATAAGACCATAACTGGGTTATGACACTATAAACATAAGACCATGGTTA
* * * *
95060273 GACCATGGCAGTGTTTATATGCAAGAGCATAGTTGAGCTATGGTATTAATG
66 GACCACGACAGTGTTTATATGCAACACCATAGTTGAGCTATGGTATTAATG
* * *
95060324 TAAAGGATGAATTGACAGATAAGACCATAACTGGGTTATGACACTATGAGCGTAAGACCATGGTT
1 TAAA-GATGAATTGACAGATAAGACCATAACTGGGTTATGACACTATAAACATAAGACCATGGTT
* * *
95060389 GGATCACGACAGTGTTTATATGTAACACCATAG
65 AGACCACGACAGTGTTTATATGCAACACCATAG
95060422 CTAGGCTATG
Statistics
Matches: 84, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
116 4 0.05
117 80 0.95
ACGTcount: A:0.36, C:0.13, G:0.23, T:0.28
Consensus pattern (116 bp):
TAAAGATGAATTGACAGATAAGACCATAACTGGGTTATGACACTATAAACATAAGACCATGGTTA
GACCACGACAGTGTTTATATGCAACACCATAGTTGAGCTATGGTATTAATG
Found at i:95067375 original size:46 final size:44
Alignment explanation
Indices: 95067303--95067608 Score: 150
Period size: 49 Copynumber: 6.5 Consensus size: 44
95067293 TATGTGTGCT
* *
95067303 AGTGGAAGACATGTCTGGGACATGCATCGGCCACATT-ATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-G--ACATTGACGAGAGCC
*
95067349 AGTGTAAGACATGTCTGGGACATGCATCGACATTGAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGACATT--GACGAGAGCC
* * ** ** * * *
95067395 AGTGTAAGACATGTCTGGGACGTGGCGTTAAC-TTGTTGTGTGTC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACATTGACGAGAGCC
* ** *
95067439 AGTGTAAGACCTGTCTGGGACATCGCATCGACACCTATAGATAAGAGCT
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACA--T-T-GACGAGAGCC
* * ** * * * *
95067488 AGTGTACGACCA-GCCTGGGACACAACATCGACTTTGATATATGAAAGTC
1 AGTGTAAGA-CATGTCTGGGACA-TGCATCGACATTG----ACGAGAGCC
* * * *
95067537 AATGTAAGACCTGTCTGGGACATGGCATCGACTTTGACGTAATAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGACATTGACG--AGAGCC
95067584 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
95067609 GCGTCGGCAT
Statistics
Matches: 194, Mismatches: 46, Indels: 39
0.70 0.16 0.14
Matches are distributed among these distances:
43 5 0.03
44 30 0.15
45 4 0.02
46 59 0.30
47 20 0.10
48 15 0.08
49 60 0.31
50 1 0.01
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGACATTGACGAGAGCC
Found at i:95070537 original size:32 final size:32
Alignment explanation
Indices: 95070493--95070568 Score: 129
Period size: 32 Copynumber: 2.4 Consensus size: 32
95070483 TAAATAAAAG
95070493 ATTGT-AA-GATAGCTTAGAATAATGGAATAA
1 ATTGTCAATGATAGCTTAGAATAATGGAATAA
95070523 ATTGTCAATGATAGCTTAGAATAATGGAATAA
1 ATTGTCAATGATAGCTTAGAATAATGGAATAA
95070555 ATTGTCAATTGATA
1 ATTGTCAA-TGATA
95070569 AAAATAAGCT
Statistics
Matches: 43, Mismatches: 0, Indels: 3
0.93 0.00 0.07
Matches are distributed among these distances:
30 5 0.12
31 2 0.05
32 31 0.72
33 5 0.12
ACGTcount: A:0.43, C:0.05, G:0.18, T:0.33
Consensus pattern (32 bp):
ATTGTCAATGATAGCTTAGAATAATGGAATAA
Found at i:95071186 original size:117 final size:117
Alignment explanation
Indices: 95070977--95071198 Score: 327
Period size: 117 Copynumber: 1.9 Consensus size: 117
95070967 TGTGGCTCAA
* *
95070977 GATGAATTGACAGATAAAACCATAACTGGGTTATGGCACTATAAACGTAAGACCATGGTTAGACC
1 GATGAATTGACAGATAAAACCATAACTGGGTTATGACACTATAAACATAAGACCATGGTTAGACC
* * * *
95071042 ATGGCAGTGTTTATATGCAAGAGCATAGCTGGGCTATGGCATTAATGTAAAG
66 ACGACAGTGTTTATATGCAAGACCATAGCTAGGCTATGGCATTAATGTAAAG
* * * * *
95071094 GATGAATTGACGGATAAGACCATAACTGGGTTATGACACTATGAACATAATACCATGGTTAGATC
1 GATGAATTGACAGATAAAACCATAACTGGGTTATGACACTATAAACATAAGACCATGGTTAGACC
* *
95071159 ACGATAGTGTTTATATGTAAGACCATAGCTAGGCTATGGC
66 ACGACAGTGTTTATATGCAAGACCATAGCTAGGCTATGGC
95071199 TCCTGGTGAT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
117 92 1.00
ACGTcount: A:0.35, C:0.15, G:0.24, T:0.27
Consensus pattern (117 bp):
GATGAATTGACAGATAAAACCATAACTGGGTTATGACACTATAAACATAAGACCATGGTTAGACC
ACGACAGTGTTTATATGCAAGACCATAGCTAGGCTATGGCATTAATGTAAAG
Found at i:95075180 original size:13 final size:13
Alignment explanation
Indices: 95075162--95075186 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
95075152 TCTTATACAT
95075162 TATTATTTATATA
1 TATTATTTATATA
95075175 TATTATTTATAT
1 TATTATTTATAT
95075187 TACACTATTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (13 bp):
TATTATTTATATA
Found at i:95075231 original size:23 final size:21
Alignment explanation
Indices: 95075192--95075241 Score: 64
Period size: 23 Copynumber: 2.3 Consensus size: 21
95075182 TATATTACAC
* *
95075192 TATTTTTTAATTTATGTATAT
1 TATTTTTTAATTAATGTAAAT
95075213 TATTTATTTAAATTAATGTAAAT
1 TATTT-TTT-AATTAATGTAAAT
95075236 TATTTT
1 TATTTT
95075242 GTATATTACT
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
21 5 0.20
22 4 0.16
23 16 0.64
ACGTcount: A:0.34, C:0.00, G:0.04, T:0.62
Consensus pattern (21 bp):
TATTTTTTAATTAATGTAAAT
Found at i:95077628 original size:24 final size:24
Alignment explanation
Indices: 95077598--95077646 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
95077588 AGGTTGGAAT
*
95077598 AGATGCAAAAAGAAACGCAAGAAC
1 AGATGCAAAAACAAACGCAAGAAC
* *
95077622 AGATGCAAACACAAATGCAAGAAC
1 AGATGCAAAAACAAACGCAAGAAC
95077646 A
1 A
95077647 ACTGGTTAAG
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.57, C:0.18, G:0.18, T:0.06
Consensus pattern (24 bp):
AGATGCAAAAACAAACGCAAGAAC
Found at i:95082236 original size:44 final size:44
Alignment explanation
Indices: 95082010--95082451 Score: 203
Period size: 44 Copynumber: 10.0 Consensus size: 44
95082000 AGCCACTAGC
* * ** *
95082010 CTTATCTCTCTGATGTAGCAAGGGAGCAGGTTGAAGATTGTACT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* * * *
95082054 CTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTATAGAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG-T
* * ** ** * *** * *
95082099 ATTATCTCCTTGATATAGCAATAGAGCAGA-TCAAAGGCGGGGAAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACT-GAA-GATTGTAGT
* * ** **** *
95082144 CTTATCTTCCC-AAGGTAGCAAGGGAGCAGATTTTAGCCACTAGC
1 CTTATC-TCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
95082188 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* * ** *
95082232 CTTATCTTCTTGAGGTAGCAAGAAAGCAGACTGAAGATTGTAAAT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGT-AGT
* * * * * * * * *
95082277 TTTGTCTCCCT-AAGTAG-TAGTGGAGCA-AATCAAAAATGGAGAAT
1 CTTATCTCCCTGAGGTAGCAAG-GGAGCAGACTGAAGATTGTAG--T
* * * * ** **** *
95082321 CTTATCTTCCC-GAGGAAGTAGGGGAGCAGATTTTAGCCACTAGC
1 CTTATC-TCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* * *
95082365 CTTATTTCCCTGAGGTAGCAAGGGAGTAGGCTGAAGATTGTAGT
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
* * * *
95082409 CTTATCTTCCTAAGGTAGCAAGGAAGCAAACTGAAGATTGTAG
1 CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAG
95082452 ATTTTGTCTC
Statistics
Matches: 278, Mismatches: 105, Indels: 30
0.67 0.25 0.07
Matches are distributed among these distances:
42 1 0.00
43 17 0.06
44 180 0.65
45 68 0.24
46 12 0.04
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (44 bp):
CTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGATTGTAGT
Found at i:95082389 original size:177 final size:177
Alignment explanation
Indices: 95081917--95082639 Score: 919
Period size: 177 Copynumber: 4.1 Consensus size: 177
95081907 ATGGTGAAGT
* * *
95081917 TAGATTTTGTCTCTCTAAGTAGTAGTGGAGCAGATCGAAAATGGTGAATCTTATCTTCCCAAGGT
1 TAGATTTTGTCTCCCTAAGTAGTAGTGGAGCAAATCAAAAATGGTGAATCTTATCTTCCCAAGGT
* * * **
95081982 AGCAGGGGAGCAAATTTTAGCCACTAGCCTTATCTCTCTGATGTAGCAAGGGAGCAGGTTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGA
* *
95082047 TTGTACTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTA
131 TTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTG
* * * * * * * *** *
95082094 TAGATATTATCTCCTTGATA-TAGCAATAGAGCAGATCAAAGGCGGGGAATCTTATCTTCCCAAG
1 TAGATTTTGTCTCCCT-A-AGTAGTAGTGGAGCAAATCAAAAATGGTGAATCTTATCTTCCCAAG
*
95082158 GTAGCAAGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAA
64 GTAGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAA
* * *
95082223 GATTGTAGTCTTATCTTCTTGAGGTAGCAAGAAAGCAGACTGAAGATTG
129 GATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTG
* * * *
95082272 TAAATTTTGTCTCCCTAAGTAGTAGTGGAGCAAATCAAAAATGGAGAATCTTATCTTCCCGAGGA
1 TAGATTTTGTCTCCCTAAGTAGTAGTGGAGCAAATCAAAAATGGTGAATCTTATCTTCCCAAGGT
* * * *
95082337 AGTAGGGGAGCAGATTTTAGCCACTAGCCTTATTTCCCTGAGGTAGCAAGGGAGTAGGCTGAAGA
66 AGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGA
*
95082402 TTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAAACTGAAGATTG
131 TTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTG
* * ** *
95082449 TAGATTTTGTCTCCCTAAGCAGTATTGGAGCAAATCTTAAATGGTGAATCTTATCTTCCCGAGGT
1 TAGATTTTGTCTCCCTAAGTAGTAGTGGAGCAAATCAAAAATGGTGAATCTTATCTTCCCAAGGT
* * * * ** * * *
95082514 AGCAGGAGAGTAGATTTTAGCCACCAGTCTTATCTCTTTGAGGTAGTAAGAGAGCA-AGTTGAAG
66 AGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGA-CTGAAG
* * * *
95082578 ATTGTAGTCTTATCGTCCTAAGGTAGCAAGGGAGCAGACTAAATATTG
130 ATTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTG
**
95082626 TAGAGCTTGTCTCC
1 TAGATTTTGTCTCC
95082640 TCATAACAGT
Statistics
Matches: 469, Mismatches: 73, Indels: 8
0.85 0.13 0.01
Matches are distributed among these distances:
176 1 0.00
177 315 0.67
178 152 0.32
179 1 0.00
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.28
Consensus pattern (177 bp):
TAGATTTTGTCTCCCTAAGTAGTAGTGGAGCAAATCAAAAATGGTGAATCTTATCTTCCCAAGGT
AGCAGGGGAGCAGATTTTAGCCACTAGCCTTATCTCCCTGAGGTAGCAAGGGAGCAGACTGAAGA
TTGTAGTCTTATCTTCCTAAGGTAGCAAGGAAGCAGACTGAAGATTG
Found at i:95087399 original size:22 final size:22
Alignment explanation
Indices: 95087371--95087416 Score: 92
Period size: 22 Copynumber: 2.1 Consensus size: 22
95087361 TGAAATGATT
95087371 GTTTAATTGTTTAATAAGTCTG
1 GTTTAATTGTTTAATAAGTCTG
95087393 GTTTAATTGTTTAATAAGTCTG
1 GTTTAATTGTTTAATAAGTCTG
95087415 GT
1 GT
95087417 AATGCTTCGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.26, C:0.04, G:0.20, T:0.50
Consensus pattern (22 bp):
GTTTAATTGTTTAATAAGTCTG
Found at i:95089451 original size:49 final size:50
Alignment explanation
Indices: 95089251--95089517 Score: 161
Period size: 49 Copynumber: 5.6 Consensus size: 50
95089241 TGTGTGCTAC
* * * * *
95089251 TGTAAGACATGTCTGGGACAT-GCATCGGC-CAC-AT-TATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAG
* * * *
95089297 TGTAAGACATGTCTGGGACAT-GCATTGGC-CTCG--AGATGTACAAGCTAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACTCGATAGATG-A-AAGCCAG
* * * * * * *
95089345 TGTAAGACCTATCTAGGACATGGCATC-A-GCTTG-TTG-TG--TGTCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAG
*
95089389 TGTAAGACCTGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCCAG
1 TGTAAGACCTGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAG
* * * * * * * * *
95089438 TGTAAGACTTGTCTGGGATACGGAATTGGC-CTCGATATATGAAAGTCAA
1 TGTAAGACCTGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAG
*
95089487 TGTAAGACCTGTCTGGGACATGGCGTCGACA
1 TGTAAGACCTGTCTGGGACATGGCATCGACA
95089518 TCTTATCCCA
Statistics
Matches: 167, Mismatches: 39, Indels: 26
0.72 0.17 0.11
Matches are distributed among these distances:
44 28 0.17
45 2 0.01
46 36 0.22
47 3 0.02
48 29 0.17
49 69 0.41
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (50 bp):
TGTAAGACCTGTCTGGGACATGGCATCGACACTCGATAGATGAAAGCCAG
Found at i:95089508 original size:142 final size:138
Alignment explanation
Indices: 95089251--95089510 Score: 328
Period size: 142 Copynumber: 1.9 Consensus size: 138
95089241 TGTGTGCTAC
* *
95089251 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACATGTCTGGGAC
1 TGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACATGTCTGGGAC
* * * *
95089316 ATGCATTGGCCTCGAGATGTACAAGCTAGTGTAAGACCTATCTAGGACATGGCATCAGCTTGTTG
66 AGGAATTGGCCTCGAGATATACAAGCTAATGTAAGACCTATCTAGGACATGGCATCAGCTTGTTG
95089381 TGTGTCAG
131 TGTGTCAG
* *
95089389 TGTAAGACCTGTCTGGGACATGGCATCGA-CACCGATAGATGAGAGCCAGTGTAAGACTTGTCTG
1 TGTAAGACATGTCTGGGACAT-GCATCGACCA-C-AT-GATGAGAGCCAGTGTAAGACATGTCTG
* * * *
95089453 GGATACGGAATTGGCCTCGATATATGA-AAG-TCAATGTAAGACCTGTCTGGGACATGGC
62 GGACA-GGAATTGGCCTCGAGATAT-ACAAGCT-AATGTAAGACCTATCTAGGACATGGC
95089511 GTCGACATCT
Statistics
Matches: 103, Mismatches: 12, Indels: 10
0.82 0.10 0.08
Matches are distributed among these distances:
138 22 0.21
139 7 0.07
140 2 0.02
141 30 0.29
142 41 0.40
143 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (138 bp):
TGTAAGACATGTCTGGGACATGCATCGACCACATGATGAGAGCCAGTGTAAGACATGTCTGGGAC
AGGAATTGGCCTCGAGATATACAAGCTAATGTAAGACCTATCTAGGACATGGCATCAGCTTGTTG
TGTGTCAG
Found at i:95093492 original size:46 final size:45
Alignment explanation
Indices: 95093360--95093607 Score: 164
Period size: 46 Copynumber: 5.3 Consensus size: 45
95093350 GGTGTGAGCT
* * * *
95093360 AGTGTAAGACATGTCTGGGACATACATCGACCA-C-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-AGCATCGA-GACGA-AGCC
* * * *
95093406 AGTGTAAGACCATGCCTGGGACATGGCATCGGCATTGAGAC-AACTGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGAGACGAA--GCC
* * *
95093454 AGTGCAAGACATGTCTGAGACATGCATCAGCCTCGAGACGTAAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACG-AAGCC
* * *
95093500 AGTGTAAGACATGTCTGGGACATGCATCAGC-TACGAGATG-TGTC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCAT-CGAGACGAAGCC
* * * * *
95093544 AATGTAAGACCATGACTGGGACATGGCATCGGCCTCGATGATGATAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCATCGA-GACGA-AGCC
95093593 AGTGTAAGACCATGT
1 AGTGTAAGA-CATGT
95093608 TCAGGACATG
Statistics
Matches: 160, Mismatches: 27, Indels: 27
0.75 0.13 0.13
Matches are distributed among these distances:
44 10 0.06
45 14 0.09
46 70 0.44
47 33 0.21
48 17 0.11
49 16 0.10
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.21
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCATCGAGACGAAGCC
Found at i:95095134 original size:46 final size:47
Alignment explanation
Indices: 95094954--95095272 Score: 230
Period size: 46 Copynumber: 6.8 Consensus size: 47
95094944 TCACTGGTGT
* * *
95094954 GAGCTAGTGTAAGA-CATGTCTGGGACATGCATCAGCCAC-A-TTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGA
* * * *
95094998 GAGCTAGTGTAAGACCATGTCTGGAACATGGCATCGG-GATTGAGACGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTA-CGAGATGA
* * * ** *
95095046 GTGCTAGTGTAAGA-CATGTTTGAGACATGCATCAACCT-CGAGACGTA
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATC-GGCTACGAGATG-A
*
95095093 -AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACGAGAT--
1 GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGA
* * * *
95095136 GTGTTAGTGTAAGACCATGTTTGGGACATGGCATCGGC-ACGAATATGTGA
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGCTACG-AGA--TGA
* * *
95095186 GAGCTAGTGTAAGACCTTGTCTGGGATATGACATCAGCCT-CGATGATGA
1 GAGCTAGTGTAAGACCATGTCTGGGACATG-CATC-GGCTACGA-GATGA
* * *
95095235 TAGCCAGTGTAAGACCATGTCCGGGACATGGCATCGGC
1 GAGCTAGTGTAAGACCATGTCTGGGACAT-GCATCGGC
95095273 AACTTGCCCC
Statistics
Matches: 214, Mismatches: 39, Indels: 40
0.73 0.13 0.14
Matches are distributed among these distances:
44 24 0.11
45 32 0.15
46 60 0.28
47 13 0.06
48 18 0.08
49 32 0.15
50 30 0.14
51 5 0.02
ACGTcount: A:0.28, C:0.19, G:0.30, T:0.24
Consensus pattern (47 bp):
GAGCTAGTGTAAGACCATGTCTGGGACATGCATCGGCTACGAGATGA
Done.