Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 279 of 297
Found at i:95106832 original size:11 final size:10
Alignment explanation
Indices: 95106805--95107217 Score: 95
Period size: 10 Copynumber: 41.2 Consensus size: 10
95106795 GGTATGTTTG
95106805 TTATGTATGT
1 TTATGTATGT
*
95106815 TTCTGTACTGT
1 TTATGTA-TGT
95106826 TTATGTATG-
1 TTATGTATGT
95106835 -TATGTTATGT
1 TTATG-TATGT
* **
95106845 TTTTAAACTG-
1 TTATGTA-TGT
*
95106855 TTATGTAT-A
1 TTATGTATGT
95106864 TTATGTATG-
1 TTATGTATGT
95106873 TTATGTACTG-
1 TTATGTA-TGT
95106883 TTATGTA--T
1 TTATGTATGT
*
95106891 TTATGTTTG-
1 TTATGTATGT
95106900 TTATGTTATGT
1 TTATG-TATGT
*
95106911 ACTAT-TATGT
1 -TTATGTATGT
*
95106921 ATGTCTGTTATGT
1 -T-TATG-TATGT
95106934 TTACTGTTATGT
1 TTA-TG-TATGT
* *
95106946 TTGTATAT-T
1 TTATGTATGT
95106955 TGTATGTTATG-
1 T-TATG-TATGT
95106966 TTATGTTATG-
1 TTATG-TATGT
95106976 TTATGTTATG-
1 TTATG-TATGT
95106986 TTATGTTATG-
1 TTATG-TATGT
95106996 TTATGT-TGT
1 TTATGTATGT
95107005 GTTATGTTATG-
1 -TTATG-TATGT
95107016 TTATGTTATG-
1 TTATG-TATGT
95107026 TTATGCTATG-
1 TTATG-TATGT
*
95107036 CTATGCTATG-
1 TTATG-TATGT
*
95107046 CTATGTTATG-
1 TTATG-TATGT
95107056 TTATGTTATGT
1 TTATG-TATGT
95107067 TTACTGTTATGT
1 TTA-TG-TATGT
* *
95107079 TTGTATAT-T
1 TTATGTATGT
*
95107088 TGTGTGTATG-
1 T-TATGTATGT
95107098 TTA--TATG-
1 TTATGTATGT
95107105 TTATGTAT-T
1 TTATGTATGT
95107114 GTTATGTATG-
1 -TTATGTATGT
95107124 -TATGTTATGT
1 TTATG-TATGT
*
95107134 TTACTATTATGT
1 TTA-T-GTATGT
* *
95107146 TTGTATAT-T
1 TTATGTATGT
95107155 TGTATGTATG-
1 T-TATGTATGT
95107165 TTATGTTATG-
1 TTATG-TATGT
95107175 TTATGTTATG-
1 TTATG-TATGT
95107185 TTATGTATG-
1 TTATGTATGT
95107194 -TATGTTATGT
1 TTATG-TATGT
95107204 TTACTGTGATGT
1 TTA-TGT-ATGT
95107216 TT
1 TT
95107218 GTATATTTAT
Statistics
Matches: 325, Mismatches: 31, Indels: 92
0.73 0.07 0.21
Matches are distributed among these distances:
7 7 0.02
8 20 0.06
9 52 0.16
10 167 0.51
11 32 0.10
12 42 0.13
13 5 0.02
ACGTcount: A:0.20, C:0.03, G:0.19, T:0.57
Consensus pattern (10 bp):
TTATGTATGT
Found at i:95106908 original size:5 final size:5
Alignment explanation
Indices: 95106853--95107395 Score: 341
Period size: 5 Copynumber: 109.8 Consensus size: 5
95106843 GTTTTTAAAC
*
95106853 TGTTA TG-TA TATTA TG-TA TGTTA TG-TA CTGTTA TG-TA T-TTA TGTT-
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA -TGTTA TGTTA TGTTA TGTTA
* *
95106898 TGTTA TGTTA TG-TA CTATTA TG-TA TG-TC TGTTA TGTTTA CTGTTA
1 TGTTA TGTTA TGTTA -TGTTA TGTTA TGTTA TGTTA TG-TTA -TGTTA
*
95106943 TGTT- TGTATA TTTGTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
1 TGTTA TGT-TA TGT-TA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
* * * *
95106994 TGTTA TGTTG TGTTA TGTTA TGTTA TGTTA TGTTA TGCTA TGCTA TGCTA
1 TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA
* *
95107044 TGCTA TGTTA TGTTA TGTTA TGTTTA CTGTTA TGTT- TGTATA T-TTG
1 TGTTA TGTTA TGTTA TGTTA TG-TTA -TGTTA TGTTA TGT-TA TGTTA
95107090 TGTGTA TGTTATA TGTTA TG-TA TTGTTA TG-TA TG-TA TGTTA TGTTTA
1 TGT-TA TG-T-TA TGTTA TGTTA -TGTTA TGTTA TGTTA TGTTA TG-TTA
* *
95107137 CTATTA TGTT- TGTATA TTTGTA TG-TA TGTTA TGTTA TGTTA TGTTA
1 -TGTTA TGTTA TGT-TA TGT-TA TGTTA TGTTA TGTTA TGTTA TGTTA
*
95107183 TGTTA TG-TA TG-TA TGTTA TGTTTA CTGTGA TGTT- TGTATA T-TTA
1 TGTTA TGTTA TGTTA TGTTA TG-TTA -TGTTA TGTTA TGT-TA TGTTA
95107227 TACG-TA TGTTA TGTTA TG-TA CTGTTA TG-TA TG-TA TGTTA TGTTTA
1 T--GTTA TGTTA TGTTA TGTTA -TGTTA TGTTA TGTTA TGTTA TG-TTA
* * * *
95107272 CTATGA TGTT- T-TTA TATT- TG-TA T-ATA TGTTA TGTTA TG-TA CTGTTA
1 -TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA -TGTTA
* * * *
95107318 TG-TA TATTA TG-TA TGCATA TTTGTA TGTT- TGTTA TTTGTTA TATTA
1 TGTTA TGTTA TGTTA TG-TTA TGT-TA TGTTA TGTTA --TGTTA TGTTA
* *
95107364 CTGTTA TGTT- TG-TA TATTA TG-TA TGTCA TGTT
1 -TGTTA TGTTA TGTTA TGTTA TGTTA TGTTA TGTT
95107396 TAATGAAAGT
Statistics
Matches: 437, Mismatches: 40, Indels: 122
0.73 0.07 0.20
Matches are distributed among these distances:
3 4 0.01
4 105 0.24
5 241 0.55
6 69 0.16
7 18 0.04
ACGTcount: A:0.21, C:0.03, G:0.19, T:0.57
Consensus pattern (5 bp):
TGTTA
Found at i:95107235 original size:65 final size:65
Alignment explanation
Indices: 95106892--95107395 Score: 483
Period size: 65 Copynumber: 7.6 Consensus size: 65
95106882 GTTATGTATT
* * * *
95106892 TATGTTTGTTATGTTATGTACTATTATGTATGTCTGTTATGTTTACTGTTATGTTTGTATATTTG
1 TATGTATGTTATGTTATGTACTGTTATGTATGTATGTTATGTTTACTGTTATGTTTGTATATTTA
*
95106957 TATGTTATGTTATGTTATGTTA-TGTTATGTTATGTTATGTTATG-TT-GTGTTATGTTATGT-T
1 TATG-TATGTTATGTTATG-TACTGTTATG-TATG-TATGTTATGTTTACTGTTATGTT-TGTAT
*
95107018 ATGT-
61 ATTTA
* * *
95107022 TATGTTATGCTATGCTATGCTA-TGCTATGTTATGTTATGTTATGTTTACTGTTATGTTTGTATA
1 TATG-TATGTTATGTTATG-TACTGTTATG-TATG-TATGTTATGTTTACTGTTATGTTTGTATA
*
95107086 TTTG
62 TTTA
* * *
95107090 TGTGTATGTTATATGTTATGTATTGTTATGTATGTATGTTATGTTTACTATTATGTTTGTATATT
1 TATGTATG-T-TATGTTATGTACTGTTATGTATGTATGTTATGTTTACTGTTATGTTTGTATA-T
95107155 TGTA
63 T-TA
*
95107159 TGTATGTTATGTTATGTTATGTTA-TGTTATGTATGTATGTTATGTTTACTGTGATGTTTGTATA
1 --TATG-TATGTTATGTTATG-TACTGTTATGTATGTATGTTATGTTTACTGTTATGTTTGTATA
95107223 TTTA
62 TTTA
* * * * *
95107227 TACGTATGTTATGTTATGTACTGTTATGTATGTATGTTATGTTTACTATGATGTTTTTATATTTG
1 TATGTATGTTATGTTATGTACTGTTATGTATGTATGTTATGTTTACTGTTATGTTTGTATATTTA
* * ** * *
95107292 TATATATGTTATGTTATGTACTGTTATGTATATTATG-TATGCATA-TTTGTATGTTTGTTATTT
1 TATGTATGTTATGTTATGTACTGTTATGTAT-GTATGTTATGTTTACTGT-TATGTTTG-TATAT
95107355 GTTA
63 -TTA
*
95107359 TAT-TACTGTTATGTT-TGTA-TATTATGTATGTCATGTT
1 TATGTA-TGTTATGTTATGTACTGTTATGTATGT-ATGTT
95107396 TAATGAAAGT
Statistics
Matches: 377, Mismatches: 36, Indels: 51
0.81 0.08 0.11
Matches are distributed among these distances:
64 5 0.01
65 152 0.40
66 55 0.15
67 70 0.19
68 21 0.06
69 17 0.05
70 47 0.12
71 6 0.02
72 4 0.01
ACGTcount: A:0.21, C:0.03, G:0.19, T:0.57
Consensus pattern (65 bp):
TATGTATGTTATGTTATGTACTGTTATGTATGTATGTTATGTTTACTGTTATGTTTGTATATTTA
Found at i:95108561 original size:40 final size:40
Alignment explanation
Indices: 95108517--95108778 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
95108507 GCTCCTCGTT
* *
95108517 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
95108557 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
95108597 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
95108636 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
95108675 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
95108714 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
95108755 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
95108779 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:95118607 original size:20 final size:20
Alignment explanation
Indices: 95118582--95118633 Score: 86
Period size: 20 Copynumber: 2.6 Consensus size: 20
95118572 CGGGTTGAGG
* *
95118582 ACACGGGCGTGTCCCATGCC
1 ACACGGACGTGTCCCAAGCC
95118602 ACACGGACGTGTCCCAAGCC
1 ACACGGACGTGTCCCAAGCC
95118622 ACACGGACGTGT
1 ACACGGACGTGT
95118634 AACCCTCCAA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.21, C:0.37, G:0.29, T:0.13
Consensus pattern (20 bp):
ACACGGACGTGTCCCAAGCC
Found at i:95118969 original size:39 final size:39
Alignment explanation
Indices: 95118910--95119030 Score: 152
Period size: 39 Copynumber: 3.1 Consensus size: 39
95118900 AGTAAAATAA
* * * *
95118910 TTTAGTCATTCAATAACTATCAAATATTTAGTGCAGTAG
1 TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
* * * *
95118949 TTTAGTTATTCAATACCTATCAATTATTCAATATAGTAA
1 TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
* *
95118988 CTTAGTTATTCAATAACTATCAATTATTCAGTTCAGTAG
1 TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
95119027 TTTA
1 TTTA
95119031 CCCCTATTAA
Statistics
Matches: 67, Mismatches: 15, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.42
Consensus pattern (39 bp):
TTTAGTTATTCAATAACTATCAATTATTCAGTACAGTAG
Found at i:95119016 original size:18 final size:18
Alignment explanation
Indices: 95118954--95119017 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
95118944 AGTAGTTTAG
*
95118954 TTATTCAATACCTATCAA
1 TTATTCAATAACTATCAA
* * *
95118972 TTATTCAATATAGTAACTTAG
1 TTATTCAATA-ACT-A-TCAA
95118993 TTATTCAATAACTATCAA
1 TTATTCAATAACTATCAA
95119011 TTATTCA
1 TTATTCA
95119018 GTTCAGTAGT
Statistics
Matches: 36, Mismatches: 7, Indels: 6
0.73 0.14 0.12
Matches are distributed among these distances:
18 19 0.53
19 2 0.06
20 3 0.08
21 12 0.33
ACGTcount: A:0.39, C:0.16, G:0.03, T:0.42
Consensus pattern (18 bp):
TTATTCAATAACTATCAA
Found at i:95120439 original size:20 final size:20
Alignment explanation
Indices: 95120416--95120472 Score: 62
Period size: 20 Copynumber: 2.8 Consensus size: 20
95120406 TTAATTTATT
95120416 TTTAATAAAAATAATTATAA
1 TTTAATAAAAATAATTATAA
*
95120436 TTTAAT-AATATAAATTATAA
1 TTTAATAAAAAT-AATTATAA
*
95120456 TTTGATAGAATAATAAT
1 TTTAATA-AA-AATAAT
95120473 AATGATGATA
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
19 4 0.13
20 19 0.63
22 5 0.17
23 2 0.07
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (20 bp):
TTTAATAAAAATAATTATAA
Found at i:95126552 original size:39 final size:39
Alignment explanation
Indices: 95126511--95126646 Score: 155
Period size: 39 Copynumber: 3.5 Consensus size: 39
95126501 ATTTAATCAG
* * * *
95126511 TAACAATCAATTATTCAGTACAATAATTTAGTCATTTAG
1 TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
* * * * *
95126550 TAACTATCAAATATTTAGTGCAGTAGTTTAGTTATTCAA
1 TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
* * *
95126589 TACCTATCAATTATTCAATACAATAATATAGTTATTCAA
1 TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
*
95126628 TAACTATCAATTGTTCAGT
1 TAACTATCAATTATTCAGT
95126647 TCAGTAGTTT
Statistics
Matches: 77, Mismatches: 20, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
39 77 1.00
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (39 bp):
TAACTATCAATTATTCAGTACAATAATTTAGTTATTCAA
Found at i:95126868 original size:44 final size:44
Alignment explanation
Indices: 95126799--95126890 Score: 123
Period size: 44 Copynumber: 2.1 Consensus size: 44
95126789 CCGAAGTAAC
*
95126799 AGTAACAGTATGACACACAAGGTGCCTCATTGACTCAAAGTCAA
1 AGTAACAGTATGACACACAAGGTGCCTCATCGACTCAAAGTCAA
** * *
95126843 AGTAACAGTATGACAC-TTAGAGTGCCTCATCGACTCAAGGTCGA
1 AGTAACAGTATGACACACAAG-GTGCCTCATCGACTCAAAGTCAA
95126887 AGTA
1 AGTA
95126891 TCCTTGAACA
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
43 2 0.05
44 40 0.95
ACGTcount: A:0.36, C:0.22, G:0.21, T:0.22
Consensus pattern (44 bp):
AGTAACAGTATGACACACAAGGTGCCTCATCGACTCAAAGTCAA
Found at i:95127896 original size:23 final size:23
Alignment explanation
Indices: 95127870--95127932 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 23
95127860 TTAATTTATT
*
95127870 TTTAATAATAATAATAATCATAA
1 TTTAAAAATAATAATAATCATAA
*
95127893 TTTAAAAAT-AT-A-AATTATAA
1 TTTAAAAATAATAATAATCATAA
*
95127913 TTTGATAGAATAATAATAAT
1 TTT-A-AAAATAATAATAAT
95127933 AATGATAAAT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
20 10 0.31
21 2 0.06
22 6 0.19
23 10 0.31
24 1 0.03
25 3 0.09
ACGTcount: A:0.56, C:0.02, G:0.03, T:0.40
Consensus pattern (23 bp):
TTTAAAAATAATAATAATCATAA
Found at i:95131695 original size:14 final size:14
Alignment explanation
Indices: 95131676--95131705 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
95131666 TAATGTATTT
95131676 AATTTATATAACAA
1 AATTTATATAACAA
*
95131690 AATTTATATTACAA
1 AATTTATATAACAA
95131704 AA
1 AA
95131706 CTACGTTTGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.37
Consensus pattern (14 bp):
AATTTATATAACAA
Found at i:95133382 original size:40 final size:40
Alignment explanation
Indices: 95133336--95133431 Score: 183
Period size: 40 Copynumber: 2.4 Consensus size: 40
95133326 CTCACTCAAA
*
95133336 TGCCTTCGGGACATAGCCCGGTTAGAGTAACTCGCACAAT
1 TGCCTTCGGGACATAGCCCAGTTAGAGTAACTCGCACAAT
95133376 TGCCTTCGGGACATAGCCCAGTTAGAGTAACTCGCACAAT
1 TGCCTTCGGGACATAGCCCAGTTAGAGTAACTCGCACAAT
95133416 TGCCTTCGGGACATAG
1 TGCCTTCGGGACATAG
95133432 ATTGGAGTTC
Statistics
Matches: 55, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 55 1.00
ACGTcount: A:0.25, C:0.27, G:0.25, T:0.23
Consensus pattern (40 bp):
TGCCTTCGGGACATAGCCCAGTTAGAGTAACTCGCACAAT
Found at i:95134587 original size:59 final size:59
Alignment explanation
Indices: 95134495--95134613 Score: 220
Period size: 59 Copynumber: 2.0 Consensus size: 59
95134485 GCAAAGATTT
*
95134495 AAACCAAGGGCTAGTTAGAACTCAAGCTAACAACTAAAACCATGCATGAATCTCATGGC
1 AAACCAAGGGCTAGTTAGAACTCAAGCTAACAACTAAAAACATGCATGAATCTCATGGC
*
95134554 AAACCATGGGCTAGTTAGAACTCAAGCTAACAACTAAAAACATGCATGAATCTCATGGC
1 AAACCAAGGGCTAGTTAGAACTCAAGCTAACAACTAAAAACATGCATGAATCTCATGGC
95134613 A
1 A
95134614 CAACATCAAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
59 58 1.00
ACGTcount: A:0.41, C:0.23, G:0.17, T:0.19
Consensus pattern (59 bp):
AAACCAAGGGCTAGTTAGAACTCAAGCTAACAACTAAAAACATGCATGAATCTCATGGC
Found at i:95146489 original size:47 final size:45
Alignment explanation
Indices: 95146435--95146567 Score: 126
Period size: 47 Copynumber: 2.9 Consensus size: 45
95146425 CGAAAATAAT
*
95146435 GCATGTCCCAGACATGTCTTACACTAGCACTCGTGTCAA-T-GCCGAC
1 GCATGTCCCAGACATGTCTTACACTAGCACTC--AT-AAGTGGCCGAC
* * * * *
95146481 GCCATGTCCCAAACATGGTCTCACACTGGCTCTCATAATGTGGCCGAT
1 G-CATGTCCCAGACAT-GTCTTACACTAGCACTCATAA-GTGGCCGAC
* *
95146529 GCATGTCCCAGACATGTCTTACACTAGCTCACATAAGTG
1 GCATGTCCCAGACATGTCTTACACTAGCACTCATAAGTG
95146568 ACCCCAAACG
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
45 5 0.07
46 20 0.28
47 27 0.38
48 20 0.28
ACGTcount: A:0.25, C:0.31, G:0.20, T:0.25
Consensus pattern (45 bp):
GCATGTCCCAGACATGTCTTACACTAGCACTCATAAGTGGCCGAC
Found at i:95156390 original size:39 final size:40
Alignment explanation
Indices: 95156299--95156478 Score: 187
Period size: 40 Copynumber: 4.5 Consensus size: 40
95156289 ATGATGTCCA
*
95156299 GGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT-TCCG
*
95156338 GACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAATTCCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAATTCCG
* *
95156378 GGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCG
* *
95156417 GGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-TCCG
*
95156457 GGCTATGTCCCGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
95156479 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 11, Indels: 17
0.81 0.07 0.11
Matches are distributed among these distances:
39 50 0.41
40 59 0.49
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATTCCG
Found at i:95156500 original size:79 final size:79
Alignment explanation
Indices: 95156347--95156511 Score: 194
Period size: 79 Copynumber: 2.1 Consensus size: 79
95156337 GGACTAAGAT
* ** *
95156347 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
*
95156412 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
*
95156426 CCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAG
1 CCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTGA-
* *
95156488 CTATATCC-GGTTAAATT
62 CTAAATCCGGGTTAAATC
95156505 CCGAAGG
1 CCGAAGG
95156512 TACGTGATTT
Statistics
Matches: 74, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
78 3 0.04
79 46 0.62
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTGACTAA
ATCCGGGTTAAATC
Found at i:95159321 original size:44 final size:42
Alignment explanation
Indices: 95159270--95159367 Score: 135
Period size: 44 Copynumber: 2.3 Consensus size: 42
95159260 ATATGTGTTC
* *
95159270 TCGTGTAAGACCACGTCTGGGACGTTGGCATCG-ACTTATGATT
1 TCGTGTAAGACCACGCCTGGGACATTGGCATCGTA-TT-TGATT
*
95159313 TACGTGTAAGACCATGCCTGGGACATTGGCATCGTATTTGATT
1 T-CGTGTAAGACCACGCCTGGGACATTGGCATCGTATTTGATT
95159356 TCGTGTAAGACC
1 TCGTGTAAGACC
95159368 CTATCTGGGA
Statistics
Matches: 50, Mismatches: 3, Indels: 5
0.86 0.05 0.09
Matches are distributed among these distances:
42 11 0.22
43 7 0.14
44 31 0.62
45 1 0.02
ACGTcount: A:0.22, C:0.20, G:0.27, T:0.31
Consensus pattern (42 bp):
TCGTGTAAGACCACGCCTGGGACATTGGCATCGTATTTGATT
Found at i:95161890 original size:29 final size:30
Alignment explanation
Indices: 95161819--95161930 Score: 117
Period size: 29 Copynumber: 3.9 Consensus size: 30
95161809 ACCCCTACAT
*
95161819 ACATGCATATGGCCCA-CTAGGCCCAA-TC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
** * *
95161847 TTATTCAAATGGCCCATCT-GGCCCAGTTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
* * *
95161876 ATATTCTTATGGCCCA-CTAAGCCCAATTC
1 ACATTCATATGGCCCATCTAGGCCCAATTC
95161905 ACATTCATATGGCCCAT-TAGGCCCAA
1 ACATTCATATGGCCCATCTAGGCCCAA
95161931 ATCATAATAT
Statistics
Matches: 67, Mismatches: 13, Indels: 7
0.77 0.15 0.08
Matches are distributed among these distances:
28 20 0.30
29 47 0.70
ACGTcount: A:0.27, C:0.32, G:0.15, T:0.26
Consensus pattern (30 bp):
ACATTCATATGGCCCATCTAGGCCCAATTC
Found at i:95161936 original size:58 final size:57
Alignment explanation
Indices: 95161826--95161936 Score: 143
Period size: 58 Copynumber: 1.9 Consensus size: 57
95161816 CATACATGCA
* ** **
95161826 TATGGCCCACTAGGCCCAATCTTATTCAAATGGCCCATCTGGCCCAGTTCATATTCT
1 TATGGCCCACTAAGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
*
95161883 TATGGCCCACTAAGCCCAATTCACATTCATATGGCCCAT-TAGGCCCAAATCATA
1 TATGGCCCACTAAGCCCAA-TCACATTCAAATGGCCCATCT-GGCCCAAATCATA
95161937 ATATCTTCAT
Statistics
Matches: 46, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 19 0.41
58 27 0.59
ACGTcount: A:0.27, C:0.32, G:0.14, T:0.27
Consensus pattern (57 bp):
TATGGCCCACTAAGCCCAATCACATTCAAATGGCCCATCTGGCCCAAATCATATTCT
Found at i:95162044 original size:19 final size:19
Alignment explanation
Indices: 95162011--95162056 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
95162001 TGGGTCCAAC
*
95162011 AGCCCATT-AGGCCCATTT
1 AGCCCATTCCGGCCCATTT
*
95162029 AGCCTATTCCGGCCCATTT
1 AGCCCATTCCGGCCCATTT
95162048 AGCCCATTC
1 AGCCCATTC
95162057 TCAACCCAAG
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
18 7 0.29
19 17 0.71
ACGTcount: A:0.20, C:0.37, G:0.15, T:0.28
Consensus pattern (19 bp):
AGCCCATTCCGGCCCATTT
Found at i:95167791 original size:25 final size:25
Alignment explanation
Indices: 95167753--95168000 Score: 214
Period size: 25 Copynumber: 10.0 Consensus size: 25
95167743 AGCAAACACA
* * *
95167753 GAATTCTCTAGAAAGCCTTTGTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* *
95167778 GAATTCTCTGGAAAGCCATTATGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* * * *
95167803 GAATCCTTTCGAAAGCCTTTGTGGA
1 GAATCCTCTGGAAAGCCTTTATGGC
* * *
95167828 GAATCCTTTGGAAATCCTTTATGGT
1 GAATCCTCTGGAAAGCCTTTATGGC
* * * *
95167853 GAATCCTTTGAAAAGCATTTTTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* *
95167878 GAATCTTCTGGAAAGCC-TTATGGT
1 GAATCCTCTGGAAAGCCTTTATGGC
** * * *
95167902 GAATATTCTAGAAATCCTTTGTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
* *
95167927 GAATCCTCT-GAAATGCATTTTTGGC
1 GAATCCTCTGGAAA-GCCTTTATGGC
* *
95167952 GAATCTTCTGGAAAGCC-TTATGGT
1 GAATCCTCTGGAAAGCCTTTATGGC
*
95167976 GAATCCTCTGGAAAGCCTTTGTGGC
1 GAATCCTCTGGAAAGCCTTTATGGC
95168001 ATGTTATCAG
Statistics
Matches: 178, Mismatches: 41, Indels: 8
0.78 0.18 0.04
Matches are distributed among these distances:
24 44 0.25
25 130 0.73
26 4 0.02
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
GAATCCTCTGGAAAGCCTTTATGGC
Found at i:95167837 original size:14 final size:14
Alignment explanation
Indices: 95167818--95167862 Score: 51
Period size: 14 Copynumber: 3.4 Consensus size: 14
95167808 CTTTCGAAAG
95167818 CCTTTGTGGAGAAT
1 CCTTTGTGGAGAAT
95167832 CC-TT-TGGA-AAT
1 CCTTTGTGGAGAAT
* *
95167843 CCTTTATGGTGAAT
1 CCTTTGTGGAGAAT
95167857 CCTTTG
1 CCTTTG
95167863 AAAAGCATTT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
11 5 0.19
12 6 0.23
13 5 0.19
14 10 0.38
ACGTcount: A:0.20, C:0.18, G:0.22, T:0.40
Consensus pattern (14 bp):
CCTTTGTGGAGAAT
Found at i:95167945 original size:74 final size:73
Alignment explanation
Indices: 95167759--95168000 Score: 274
Period size: 74 Copynumber: 3.3 Consensus size: 73
95167749 CACAGAATTC
* * *
95167759 TCTAGAAAGCCTTTGTGGCGAATTCTCTGGAAAGCCA-TTATGGCGAATCCTT-TCGAAAGCCTT
1 TCTAGAAAGCCTTTGTGGCGAATCCTCT-GAAAG-CATTTTTGGCGAAT-CTTCTGGAAAGCC-T
* *
95167822 TGTGGAGAATCCT
62 TATGGTGAAT-CT
* * * * *
95167835 T-TGGAAATCCTTTATGGTGAATCCTTTGAAAAGCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
1 TCTAGAAAGCCTTTGTGGCGAATCCTCTG-AAAGCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
*
95167899 GGTGAATAT
65 GGTGAATCT
*
95167908 TCTAGAAATCCTTTGTGGCGAATCCTCTGAAATGCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
1 TCTAGAAAGCCTTTGTGGCGAATCCTCTGAAA-GCATTTTTGGCGAATCTTCTGGAAAGCCTTAT
*
95167973 GGTGAATCC
65 GGTGAATCT
*
95167982 TCTGGAAAGCCTTTGTGGC
1 TCTAGAAAGCCTTTGTGGC
95168001 ATGTTATCAG
Statistics
Matches: 142, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
73 5 0.04
74 94 0.66
75 42 0.30
76 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (73 bp):
TCTAGAAAGCCTTTGTGGCGAATCCTCTGAAAGCATTTTTGGCGAATCTTCTGGAAAGCCTTATG
GTGAATCT
Found at i:95171862 original size:22 final size:22
Alignment explanation
Indices: 95171837--95171885 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
95171827 GGAAATTAGT
* * *
95171837 GATTTCATTAAAGAGTAAATGA
1 GATTTCATGAAAGAGCAAAAGA
95171859 GATTTCATGAAAGAGCAAAAGA
1 GATTTCATGAAAGAGCAAAAGA
95171881 GATTT
1 GATTT
95171886 AAATACAAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
22 24 1.00
ACGTcount: A:0.45, C:0.06, G:0.20, T:0.29
Consensus pattern (22 bp):
GATTTCATGAAAGAGCAAAAGA
Found at i:95175372 original size:12 final size:11
Alignment explanation
Indices: 95175357--95175404 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 11
95175347 AAAAGTACTT
95175357 TAAAAATATAAA
1 TAAAAATA-AAA
*
95175369 TAAAGATAAAA
1 TAAAAATAAAA
95175380 GTAAAAATAGAAA
1 -TAAAAATA-AAA
95175393 TAATAAATAAAA
1 TAA-AAATAAAA
95175405 AAGTCTTTAA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
11 3 0.10
12 20 0.65
13 8 0.26
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (11 bp):
TAAAAATAAAA
Found at i:95175384 original size:24 final size:25
Alignment explanation
Indices: 95175357--95175404 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 25
95175347 AAAAGTACTT
* *
95175357 TAAAAATATAAATAA-AGATAAAAG
1 TAAAAATAGAAATAATAAATAAAAG
95175381 TAAAAATAGAAATAATAAATAAAA
1 TAAAAATAGAAATAATAAATAAAA
95175405 AAGTCTTTAA
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
24 14 0.67
25 7 0.33
ACGTcount: A:0.73, C:0.00, G:0.06, T:0.21
Consensus pattern (25 bp):
TAAAAATAGAAATAATAAATAAAAG
Found at i:95183100 original size:79 final size:81
Alignment explanation
Indices: 95182991--95183173 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
95182981 TACTCGTTCA
* *
95182991 AATGCCTTCGGGACCTAGCCCGG-TTATAGTAACTCGCACAAAAGCCTTCAGGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAAGCCTTC-GGATCTTAACCCGG
* *
95183054 ATTTAGTAAC-TCGCACC
65 ATATAGTAACTTAGCA-C
* **
95183071 AATGCCTTCGGG-CTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGA
1 AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGGA
* *
95183134 TATGGTCACTTAGCAC
66 TATAGTAACTTAGCAC
*
95183150 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
95183174 CATCATTCGA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 58 0.65
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.23
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAAAGCCTTCGGATCTTAACCCGGA
TATAGTAACTTAGCAC
Found at i:95183173 original size:40 final size:39
Alignment explanation
Indices: 95182970--95183173 Score: 200
Period size: 40 Copynumber: 5.1 Consensus size: 39
95182960 CGGAATTTAA
** *
95182970 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACCTAGC
1 CCGGATATAG-TAACTCGCACAAA-GCCTTCGGGACTTAGC
* * *
95183010 CCGGTTATAGTAACTCGCACAAAAGCCTTCAGGACTTAAC
1 CCGGATATAGTAACTCGCAC-AAAGCCTTCGGGACTTAGC
* *
95183050 CCGGATTTAGTAACTCGCACCAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCA-CAAAGCCTTCGGGACTTAGC
*
95183089 CCGGA-ATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAA-GCCTTCGGGA-CTTAGC
* * *
95183129 CCGGATATGGTCACTTAGCACAAAGCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAAGCCTTCGGGACTTAGC
95183169 CCGGA
1 CCGGA
95183174 CATCATTCGA
Statistics
Matches: 136, Mismatches: 18, Indels: 20
0.78 0.10 0.11
Matches are distributed among these distances:
38 5 0.04
39 29 0.21
40 86 0.63
41 16 0.12
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (39 bp):
CCGGATATAGTAACTCGCACAAAGCCTTCGGGACTTAGC
Found at i:95184368 original size:56 final size:56
Alignment explanation
Indices: 95184301--95184420 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
95184291 TATTAGTTTA
95184301 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
95184357 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
95184413 TTGCCCAT
1 TTGCCCAT
95184421 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:95200203 original size:27 final size:27
Alignment explanation
Indices: 95200173--95200350 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
95200163 ATATTGAGCC
* *
95200173 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
95200200 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
95200227 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
95200255 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
95200282 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
95200309 CGCACACTTAGTACAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
95200336 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95200351 GTACAATTTA
Statistics
Matches: 127, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 102 0.80
28 25 0.20
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:95200312 original size:82 final size:81
Alignment explanation
Indices: 95200194--95200349 Score: 215
Period size: 82 Copynumber: 1.9 Consensus size: 81
95200184 TGCTATATAA
* * * *
95200194 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAGACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTC-GAATCGCA
95200259 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
95200276 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTACAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCA
95200340 CACTTAGTGC
65 CACTTAGTGC
95200350 TGTACAATTT
Statistics
Matches: 65, Mismatches: 8, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
81 18 0.28
82 47 0.72
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTACAACATAGTCGAATCGCAC
ACTTAGTGCCGCATGG
Found at i:95204282 original size:54 final size:54
Alignment explanation
Indices: 95204200--95204305 Score: 203
Period size: 54 Copynumber: 2.0 Consensus size: 54
95204190 AATTTTGCTT
95204200 GGGTCAACTCGAATACCCAATGCGGATACCACATGACCCAAGAAGCTAACCTTC
1 GGGTCAACTCGAATACCCAATGCGGATACCACATGACCCAAGAAGCTAACCTTC
*
95204254 GGGTCAACTCGAATACCCGATGCGGATACCACATGACCCAAGAAGCTAACCT
1 GGGTCAACTCGAATACCCAATGCGGATACCACATGACCCAAGAAGCTAACCT
95204306 CTCTTAACCA
Statistics
Matches: 51, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.33, C:0.31, G:0.20, T:0.16
Consensus pattern (54 bp):
GGGTCAACTCGAATACCCAATGCGGATACCACATGACCCAAGAAGCTAACCTTC
Found at i:95204608 original size:96 final size:96
Alignment explanation
Indices: 95204444--95204635 Score: 339
Period size: 96 Copynumber: 2.0 Consensus size: 96
95204434 AACACAACTA
95204444 CGAACCGATCCAAATACGGCCTGAAGATCCGATTCATCAAATCCATAAACACCGCAGGGGCATTA
1 CGAACCGATCCAAATACGGCCTGAAGATCCGATTCATCAAATCCATAAACACCGCAGGGGCATTA
*
95204509 GTGAGCCCGAACGGCATCACTAAGAACTCGT
66 GTGAGCCCAAACGGCATCACTAAGAACTCGT
* * * *
95204540 CGAACCGATCCAAATATGGTCTGAAGATCCGATTCATCAAATCCATAAATACTGCAGGGGCATTA
1 CGAACCGATCCAAATACGGCCTGAAGATCCGATTCATCAAATCCATAAACACCGCAGGGGCATTA
95204605 GTGAGCCCAAACGGCATCACTAAGAACTCGT
66 GTGAGCCCAAACGGCATCACTAAGAACTCGT
95204636 AGTGACCGTA
Statistics
Matches: 91, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
96 91 1.00
ACGTcount: A:0.34, C:0.27, G:0.20, T:0.19
Consensus pattern (96 bp):
CGAACCGATCCAAATACGGCCTGAAGATCCGATTCATCAAATCCATAAACACCGCAGGGGCATTA
GTGAGCCCAAACGGCATCACTAAGAACTCGT
Found at i:95208387 original size:27 final size:27
Alignment explanation
Indices: 95208357--95208534 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
95208347 ATATTGAGTC
* * * *
95208357 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
95208384 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
95208411 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
95208439 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
95208466 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
95208493 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
95208520 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
95208535 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:95208496 original size:82 final size:81
Alignment explanation
Indices: 95208378--95208533 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
95208368 TGCTATATAA
* *
95208378 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
95208443 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
95208460 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
95208524 CACTTAGTGC
65 CACTTAGTGC
95208534 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:95217479 original size:21 final size:19
Alignment explanation
Indices: 95217440--95217479 Score: 53
Period size: 21 Copynumber: 2.0 Consensus size: 19
95217430 TGAATATGTG
*
95217440 TTTATTGTGAAATTGAATA
1 TTTATTGTGAAAGTGAATA
95217459 TTTATTAGTGAAAAGTGAATA
1 TTTATT-GTG-AAAGTGAATA
95217480 GAATTATATT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 6 0.33
20 3 0.17
21 9 0.50
ACGTcount: A:0.40, C:0.00, G:0.17, T:0.42
Consensus pattern (19 bp):
TTTATTGTGAAAGTGAATA
Found at i:95217513 original size:19 final size:20
Alignment explanation
Indices: 95217491--95217538 Score: 62
Period size: 19 Copynumber: 2.4 Consensus size: 20
95217481 AATTATATTG
95217491 AATTAAAAAAAATAT-AATT
1 AATTAAAAAAAATATGAATT
**
95217510 AATTAATTAAAATATGAATT
1 AATTAAAAAAAATATGAATT
95217530 AATTGAAAA
1 AATT-AAAA
95217539 CTGAAAAGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
19 13 0.57
20 8 0.35
21 2 0.09
ACGTcount: A:0.62, C:0.00, G:0.04, T:0.33
Consensus pattern (20 bp):
AATTAAAAAAAATATGAATT
Found at i:95217724 original size:6 final size:6
Alignment explanation
Indices: 95217713--95217740 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
95217703 TGTCGGATAT
95217713 TGTTAC TGTTAC TGTTAC TGTTAC TGTT
1 TGTTAC TGTTAC TGTTAC TGTTAC TGTT
95217741 TCGGATTTGT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.14, C:0.14, G:0.18, T:0.54
Consensus pattern (6 bp):
TGTTAC
Found at i:95217787 original size:47 final size:48
Alignment explanation
Indices: 95217728--95217835 Score: 182
Period size: 48 Copynumber: 2.3 Consensus size: 48
95217718 CTGTTACTGT
95217728 TACTGTTACTGTTT-CGGATTTGTTCCAATGAGGTACTCTGTGTACCG
1 TACTGTTACTGTTTCCGGATTTGTTCCAATGAGGTACTCTGTGTACCG
* *
95217775 TACTGTTACTGTTTCCGGATTTGTTTCGATGAGGTACTCTGTGTACCG
1 TACTGTTACTGTTTCCGGATTTGTTCCAATGAGGTACTCTGTGTACCG
*
95217823 TACTGCTACTGTT
1 TACTGTTACTGTT
95217836 ACTGTTACTG
Statistics
Matches: 57, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 14 0.25
48 43 0.75
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (48 bp):
TACTGTTACTGTTTCCGGATTTGTTCCAATGAGGTACTCTGTGTACCG
Found at i:95218089 original size:72 final size:71
Alignment explanation
Indices: 95217952--95218154 Score: 194
Period size: 72 Copynumber: 2.8 Consensus size: 71
95217942 AAATGTATAA
* * * * * * * *
95217952 AATAACTGATTATTACTGAATAATTGACTGTTACAGGATAATTGACTGTTACTGGATATTAGACT
1 AATAACTGAATATTACTGAATAATTGAC-ATTACTGAATAACTGACTGTCACTGAATAATAGACT
*
95218017 GTTACTG
65 GCTACTG
* *
95218024 AATAACTGAAAATTACTGAATAATTGATCATTACTGAATAACTGATTGTCACTGAATGAAT-GAC
1 AATAACTGAATATTACTGAATAATTGA-CATTACTGAATAACTGACTGTCACTGAAT-AATAGAC
95218088 TGCTACTG
64 TGCTACTG
* * * * * *
95218096 AATAACTTAATTGTTACTGAAT-ATCTGACTTTACTGAATAATTGACTGTTACTGGATAA
1 AATAACTGAA-TATTACTGAATAAT-TGACATTACTGAATAACTGACTGTCACTGAATAA
95218155 CCGATCAATT
Statistics
Matches: 108, Mismatches: 19, Indels: 9
0.79 0.14 0.07
Matches are distributed among these distances:
71 2 0.02
72 91 0.84
73 15 0.14
ACGTcount: A:0.36, C:0.12, G:0.16, T:0.36
Consensus pattern (71 bp):
AATAACTGAATATTACTGAATAATTGACATTACTGAATAACTGACTGTCACTGAATAATAGACTG
CTACTG
Found at i:95218131 original size:17 final size:18
Alignment explanation
Indices: 95217964--95218154 Score: 167
Period size: 18 Copynumber: 10.6 Consensus size: 18
95217954 TAACTGATTA
95217964 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
* *
95217982 TTACAGGATAATTGACTG
1 TTACTGAATAATTGACTG
*
95218000 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* ***
95218018 TTACTGAATAACTGAAAA
1 TTACTGAATAATTGACTG
*
95218036 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
95218054 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
95218072 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* * *
95218090 CTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
95218109 TTACTGAAT-ATCTGACT-
1 TTACTGAATAAT-TGACTG
95218126 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
95218144 TTACTGGATAA
1 TTACTGAATAA
95218155 CCGATCAATT
Statistics
Matches: 141, Mismatches: 22, Indels: 20
0.77 0.12 0.11
Matches are distributed among these distances:
17 20 0.14
18 104 0.74
19 17 0.12
ACGTcount: A:0.35, C:0.13, G:0.16, T:0.36
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:95218214 original size:18 final size:18
Alignment explanation
Indices: 95217952--95218247 Score: 161
Period size: 18 Copynumber: 16.1 Consensus size: 18
95217942 AAATGTATAA
* *
95217952 AATAACTGATTATTACTG
1 AATAATTGATTGTTACTG
* *
95217970 AATAATTGACTGTTACAG
1 AATAATTGATTGTTACTG
* *
95217988 GATAATTGACTGTTACTG
1 AATAATTGATTGTTACTG
* *
95218006 GAT-ATTAGACTGTTACTG
1 AATAATT-GATTGTTACTG
* ***
95218024 AATAACTGAAAATTACTG
1 AATAATTGATTGTTACTG
**
95218042 AATAATTGATCATTACTG
1 AATAATTGATTGTTACTG
* *
95218060 AATAACTGATTGTCACTG
1 AATAATTGATTGTTACTG
* *
95218078 AATGAA-TGACTGCTACTG
1 AAT-AATTGATTGTTACTG
*
95218096 AATAACTTAATTGTTACTG
1 AATAA-TTGATTGTTACTG
*
95218115 AAT-ATCTGACT-TTACTG
1 AATAAT-TGATTGTTACTG
*
95218132 AATAATTGACTGTTACTGG
1 AATAATTGATTGTTACT-G
* *
95218151 ATAACCGATCAATTGATCGATACTG
1 ---A---AT-AATTGATTGTTACTG
* * *
95218176 AATAATTGGTTATTATTG
1 AATAATTGATTGTTACTG
*
95218194 AATAATTGATTGTTACCG
1 AATAATTGATTGTTACTG
* **
95218212 AATAACTGGCTGTTACTG
1 AATAATTGATTGTTACTG
* *
95218230 AATAAATAATTGTT-CTG
1 AATAATTGATTGTTACTG
95218247 A
1 A
95218248 GAGTTAATGA
Statistics
Matches: 216, Mismatches: 46, Indels: 33
0.73 0.16 0.11
Matches are distributed among these distances:
17 24 0.11
18 157 0.73
19 19 0.09
22 2 0.01
25 3 0.01
26 11 0.05
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.36
Consensus pattern (18 bp):
AATAATTGATTGTTACTG
Found at i:95218916 original size:18 final size:19
Alignment explanation
Indices: 95218879--95218918 Score: 55
Period size: 20 Copynumber: 2.1 Consensus size: 19
95218869 ACCCCTGCAT
95218879 CACACGCCCGTGCTCGCCAC
1 CACACGCCCGTGC-CGCCAC
*
95218899 CACATGCCCGTG-CGCCAC
1 CACACGCCCGTGCCGCCAC
95218917 CA
1 CA
95218919 TACAACAGCC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
18 8 0.42
20 11 0.58
ACGTcount: A:0.17, C:0.53, G:0.20, T:0.10
Consensus pattern (19 bp):
CACACGCCCGTGCCGCCAC
Found at i:95220420 original size:5 final size:5
Alignment explanation
Indices: 95220410--95220516 Score: 103
Period size: 5 Copynumber: 20.2 Consensus size: 5
95220400 TGAATCCTCC
95220410 TATTT TATTT TA-TT TATTCT TATTTT TATTT TA-TT TATTT TA-TT TATTT
1 TATTT TATTT TATTT TATT-T TA-TTT TATTT TATTT TATTT TATTT TATTT
*
95220459 TATTTT TATTT TGATTTT TATTTT TATTT TCATTT CAATTT TATTAT TATTT
1 TA-TTT TATTT T-A-TTT TA-TTT TATTT T-ATTT -TATTT TATT-T TATTT
95220511 TATTT T
1 TATTT T
95220517 GAAAGACATA
Statistics
Matches: 89, Mismatches: 2, Indels: 22
0.79 0.02 0.19
Matches are distributed among these distances:
4 12 0.13
5 39 0.44
6 32 0.36
7 6 0.07
ACGTcount: A:0.21, C:0.03, G:0.01, T:0.76
Consensus pattern (5 bp):
TATTT
Found at i:95220438 original size:6 final size:6
Alignment explanation
Indices: 95220422--95220516 Score: 83
Period size: 6 Copynumber: 16.3 Consensus size: 6
95220412 TTTTATTTTA
*
95220422 TTTATT CTTATT TTTA-T TTTATT TATT-TT ATTTA-T TTTATT TTTATT
1 TTTATT TTTATT TTTATT TTTATT T-TTATT -TTTATT TTTATT TTTATT
* * * * *
95220469 TTGATT TTTATT TTTATT TTCA-T TTCAAT TTTATT ATTA-T TTTATT
1 TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT TTTATT
95220515 TT
1 TT
95220517 GAAAGACATA
Statistics
Matches: 73, Mismatches: 9, Indels: 14
0.76 0.09 0.15
Matches are distributed among these distances:
5 18 0.25
6 52 0.71
7 3 0.04
ACGTcount: A:0.20, C:0.03, G:0.01, T:0.76
Consensus pattern (6 bp):
TTTATT
Found at i:95224862 original size:47 final size:47
Alignment explanation
Indices: 95224799--95225158 Score: 544
Period size: 47 Copynumber: 7.6 Consensus size: 47
95224789 CCCTTCGGGA
* * *
95224799 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95224846 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
95224893 CTTATCTCATATATGCA-TGTTCTCATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
95224940 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
95224987 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* * *
95225036 CTTATCACTTATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
*
95225083 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATTGGCCATTCGGC
95225132 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
95225159 TATTCAAATA
Statistics
Matches: 289, Mismatches: 18, Indels: 12
0.91 0.06 0.04
Matches are distributed among these distances:
46 1 0.00
47 199 0.69
49 88 0.30
50 1 0.00
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:95225036 original size:96 final size:96
Alignment explanation
Indices: 95224799--95225158 Score: 543
Period size: 96 Copynumber: 3.8 Consensus size: 96
95224789 CCCTTCGGGA
* * *
95224799 CTTATCACAT-T-TATACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
95224862 ACTTTCACATTCATCACATTGGCCATTCGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
* * * *
95224893 CTTATCTC--ATATATGCA-TGTTCTCATTCATCACATTGGCCATTCGGCCTTATCACACATACA
1 CTTATCACATATATATACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACA
95224955 CA-TGTTCACATTCATCACATTGGCCATTCGGC
65 CACT-TTCACATTCATCACATTGGCCATTCGGC
* *
95224987 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACTTATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
* *
95225052 ACTTTCACATTCATCACATCGGCCATTAGGC
66 ACTTTCACATTCATCACATTGGCCATTCGGC
* *
95225083 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATAC
1 CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
95225148 ACTTTCACATT
66 ACTTTCACATT
95225159 TATTCAAATA
Statistics
Matches: 241, Mismatches: 17, Indels: 14
0.89 0.06 0.05
Matches are distributed among these distances:
93 3 0.01
94 87 0.36
96 149 0.62
97 2 0.01
ACGTcount: A:0.28, C:0.29, G:0.09, T:0.34
Consensus pattern (96 bp):
CTTATCACATATATATACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATACAC
ACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:95225063 original size:143 final size:142
Alignment explanation
Indices: 95224813--95225158 Score: 527
Period size: 143 Copynumber: 2.4 Consensus size: 142
95224803 TCACATTTAT
* *
95224813 ACACTTCCACATCCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
1 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
* * * * *
95224878 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCTCATTCATCACATTGGCCATTCGGCCTT
66 CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTT
95224943 ATCAC-ACATAC
131 ATCACAACATAC
95224954 ACA-TGTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATATACACTTTCACATTCA
1 ACACT-TTCACATTCATCACATTGGCCATTCGGCCTTATCAC--ATATATACACTTTCACATTCA
*
95225018 TCACATTGGCCATTCGGCCTTATCACTTATATACACT-TTCACATTCATCACATCGGCCATTAGG
63 TCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCACATTCATCACATCGGCCATTAGG
* *
95225082 CCTTATCACATATATAT
127 CCTTATCACA-ACATAC
*
95225099 ACACTTTCACATTCATCACATTGGCCATTAGGCCTTATCACATATATACACTTTCACATT
1 ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATT
95225159 TATTCAAATA
Statistics
Matches: 187, Mismatches: 11, Indels: 12
0.89 0.05 0.06
Matches are distributed among these distances:
140 1 0.01
141 37 0.20
143 105 0.56
144 1 0.01
145 42 0.22
146 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.34
Consensus pattern (142 bp):
ACACTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATACACTTTCACATTCATCA
CATTGGCCATTCGGCCTTATCACATATATACATGTTCACATTCATCACATCGGCCATTAGGCCTT
ATCACAACATAC
Found at i:95226673 original size:56 final size:56
Alignment explanation
Indices: 95226606--95226725 Score: 204
Period size: 56 Copynumber: 2.1 Consensus size: 56
95226596 TAAGAGTTTA
*
95226606 TTGCCCATGCTTCTTATTTTATTCCTCCATTAACACAACAGGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCCTCCATTAACACAACAGGTTTCATGACATCTT
** *
95226662 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATCTT
1 TTGCCCATGCTTCTTATTTTATTCCTCCATTAACACAACAGGTTTCATGACATCTT
95226718 TTGCCCAT
1 TTGCCCAT
95226726 CATCCCTTGT
Statistics
Matches: 60, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.23, C:0.25, G:0.09, T:0.43
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCCTCCATTAACACAACAGGTTTCATGACATCTT
Found at i:95233907 original size:39 final size:40
Alignment explanation
Indices: 95233864--95234033 Score: 243
Period size: 40 Copynumber: 4.3 Consensus size: 40
95233854 TCCTCGTTCA
* * * *
95233864 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
95233903 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
95233943 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
* * * *
95233983 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
*
95234023 AAGGCCTTCGG
1 AATGCCTTCGG
95234034 ATCTTAGTCC
Statistics
Matches: 121, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
39 35 0.29
40 86 0.71
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCACG
Found at i:95233962 original size:40 final size:39
Alignment explanation
Indices: 95233864--95234086 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
95233854 TCCTCGTTCA
* * * * *
95233864 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
*
95233903 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
95233942 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
95233982 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* ** * * * *
95234022 AAAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
95234063 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
95234087 CAGCATTCAA
Statistics
Matches: 162, Mismatches: 18, Indels: 7
0.87 0.10 0.04
Matches are distributed among these distances:
39 38 0.23
40 116 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:95234095 original size:41 final size:41
Alignment explanation
Indices: 95234018--95234095 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
95234008 TTAGTATCTC
* * *
95234018 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
95234059 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
95234096 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:95241910 original size:40 final size:39
Alignment explanation
Indices: 95241812--95242034 Score: 241
Period size: 40 Copynumber: 5.6 Consensus size: 39
95241802 TCCTCGTTCA
* * * * *
95241812 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
95241851 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
95241890 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* *
95241930 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
* * * * * *
95241970 AAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCAC
* *
95242011 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
95242035 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
Found at i:95242034 original size:120 final size:119
Alignment explanation
Indices: 95241812--95242034 Score: 272
Period size: 120 Copynumber: 1.9 Consensus size: 119
95241802 TCCTCGTTCA
* * * *
95241812 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
* *
95241877 TAACAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
66 TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
95241931 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTC-GGATCTTAATCCGGA
1 AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGA-CATAACCCGGA
* *
95241995 TATATTC-ACTTAGCAC-AAAGCCTTCGGGACTTAGCCCGGA
64 TATA-ACAAC-TAGCACGAAAGCCTTCGGGACTTAACCCGGA
95242035 CAGCATTCAA
Statistics
Matches: 87, Mismatches: 13, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
119 37 0.43
120 44 0.51
121 6 0.07
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACATAACCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATA
TAACAACTAGCACGAAAGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:95250169 original size:21 final size:21
Alignment explanation
Indices: 95250143--95250211 Score: 93
Period size: 21 Copynumber: 3.3 Consensus size: 21
95250133 GCTTTTGTTC
* *
95250143 AGCTCATGAGAGTTGAATAGA
1 AGCTCATGAGAGCTGAAAAGA
*
95250164 AGCTCATGAGAGCTGAACAGA
1 AGCTCATGAGAGCTGAAAAGA
* *
95250185 AGCTCGTGAGAGCTAAAAAGA
1 AGCTCATGAGAGCTGAAAAGA
95250206 AGCTCA
1 AGCTCA
95250212 AAAGAGTTGA
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 42 1.00
ACGTcount: A:0.39, C:0.16, G:0.28, T:0.17
Consensus pattern (21 bp):
AGCTCATGAGAGCTGAAAAGA
Found at i:95250230 original size:42 final size:42
Alignment explanation
Indices: 95250143--95250233 Score: 101
Period size: 42 Copynumber: 2.2 Consensus size: 42
95250133 GCTTTTGTTC
* * * ** *
95250143 AGCTCATGAGAGTTGAATAGAAGCTCATGAGAGCTGAACAGA
1 AGCTCATGAGAGCTAAAAAGAAGCTCAAAAGAGCTGAACAAA
* * *
95250185 AGCTCGTGAGAGCTAAAAAGAAGCTCAAAAGAGTTGAGCAAA
1 AGCTCATGAGAGCTAAAAAGAAGCTCAAAAGAGCTGAACAAA
95250227 AGCTCAT
1 AGCTCAT
95250234 ACGAGCTGAT
Statistics
Matches: 39, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.41, C:0.15, G:0.26, T:0.18
Consensus pattern (42 bp):
AGCTCATGAGAGCTAAAAAGAAGCTCAAAAGAGCTGAACAAA
Found at i:95252120 original size:39 final size:39
Alignment explanation
Indices: 95252043--95252122 Score: 108
Period size: 39 Copynumber: 2.1 Consensus size: 39
95252033 AGATGAACCG
*
95252043 AAGCTCATAAGAACTTATCCACCCGAAGCACACCAACAA
1 AAGCTCATAAGAACTGATCCACCCGAAGCACACCAACAA
* * *
95252082 AAGCTCATAAG-AGTGATCCACCCGAATCACATCGAACAA
1 AAGCTCATAAGAACTGATCCACCCGAAGCACA-CCAACAA
95252121 AA
1 AA
95252123 AGTATAACGC
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
38 17 0.47
39 19 0.53
ACGTcount: A:0.44, C:0.30, G:0.12, T:0.14
Consensus pattern (39 bp):
AAGCTCATAAGAACTGATCCACCCGAAGCACACCAACAA
Found at i:95254220 original size:48 final size:48
Alignment explanation
Indices: 95254127--95254262 Score: 146
Period size: 48 Copynumber: 2.8 Consensus size: 48
95254117 CATACCGATG
** * * * * * *
95254127 CCGATGCCACATCCCAGATATGGCCTTACACTAGCACACATATCAACA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAATCAACA
* **
95254175 CCGATGCCATGTCCCAGACAAGGTCTTACACTGGCTCTCAAATCAATG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAATCAACA
* * *
95254223 CAGATGCCATGTCCCAAACATGGTCTTACATTGGCTCTCA
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCA
95254263 TTGGCCATGG
Statistics
Matches: 73, Mismatches: 15, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
48 73 1.00
ACGTcount: A:0.29, C:0.32, G:0.16, T:0.23
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCTCAAATCAACA
Found at i:95257211 original size:21 final size:22
Alignment explanation
Indices: 95257166--95257220 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
95257156 TGCAGGGCTC
*
95257166 ACACGCCCGTGTGGTCCAATGG
1 ACACGCCCGTGTGGACCAATGG
**
95257188 ACACGCCCGTGT-GACCCTTGG
1 ACACGCCCGTGTGGACCAATGG
95257209 ACACGCCCGTGT
1 ACACGCCCGTGT
95257221 TAGAGGTCTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
21 18 0.60
22 12 0.40
ACGTcount: A:0.16, C:0.36, G:0.29, T:0.18
Consensus pattern (22 bp):
ACACGCCCGTGTGGACCAATGG
Found at i:95266034 original size:27 final size:27
Alignment explanation
Indices: 95266004--95266080 Score: 118
Period size: 27 Copynumber: 2.9 Consensus size: 27
95265994 CTTACCATAT
* * *
95266004 AAGGGGAAAACAGTCATTTTGCCTCAC
1 AAGGGCAAAATAGTCATTTTACCTCAC
*
95266031 AAGGGCAAAATAGTCATTTTACCTTAC
1 AAGGGCAAAATAGTCATTTTACCTCAC
95266058 AAGGGCAAAATAGTCATTTTACC
1 AAGGGCAAAATAGTCATTTTACC
95266081 CTATAGGGGA
Statistics
Matches: 46, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.26
Consensus pattern (27 bp):
AAGGGCAAAATAGTCATTTTACCTCAC
Found at i:95266101 original size:27 final size:26
Alignment explanation
Indices: 95266069--95266242 Score: 186
Period size: 27 Copynumber: 6.5 Consensus size: 26
95266059 AGGGCAAAAT
* *
95266069 AGTCATTTTACCCTATAGGGGAATTAC
1 AGTCATTTTACCCTAT-GGGGTATTTC
* * * * *
95266096 AATCATTATAACTTATAGGGATATTTC
1 AGTCATTTTACCCTAT-GGGGTATTTC
* *
95266123 GGTCACTTTACCCTATGGGGGTATTTC
1 AGTCATTTTACCCTAT-GGGGTATTTC
* *
95266150 GGTCATTTTACGCTATGGGGGTATTTC
1 AGTCATTTTACCCTAT-GGGGTATTTC
*
95266177 AATCATTTTACCCTATGTGGGTATTTC
1 AGTCATTTTACCCTATG-GGGTATTTC
*
95266204 GGTCATTTTACCCTATGGGGTATTTC
1 AGTCATTTTACCCTATGGGGTATTTC
95266230 AGTCATTTTACCC
1 AGTCATTTTACCC
95266243 GATTAAGGGT
Statistics
Matches: 123, Mismatches: 23, Indels: 3
0.83 0.15 0.02
Matches are distributed among these distances:
26 22 0.18
27 101 0.82
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (26 bp):
AGTCATTTTACCCTATGGGGTATTTC
Found at i:95266155 original size:81 final size:80
Alignment explanation
Indices: 95266069--95266242 Score: 233
Period size: 81 Copynumber: 2.2 Consensus size: 80
95266059 AGGGCAAAAT
*
95266069 AGTCATTTTACCCTATAGGGGAATTACAATCATTATAACTTATAG-GGATATTTCGGTCACTTTA
1 AGTCATTTTACCCTATAGGGGAATTACAATCATTATAACCTAT-GTGGATATTTCGGTCACTTTA
95266133 CCCTATGGGGGTATTTC
65 CCCTAT-GGGGTATTTC
* * * * * * * * *
95266150 GGTCATTTTACGCTATGGGGGTATTTCAATCATTTTACCCTATGTGGGTATTTCGGTCATTTTAC
1 AGTCATTTTACCCTATAGGGGAATTACAATCATTATAACCTATGTGGATATTTCGGTCACTTTAC
95266215 CCTATGGGGTATTTC
66 CCTATGGGGTATTTC
95266230 AGTCATTTTACCC
1 AGTCATTTTACCC
95266243 GATTAAGGGT
Statistics
Matches: 80, Mismatches: 12, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
80 22 0.28
81 58 0.73
ACGTcount: A:0.22, C:0.18, G:0.20, T:0.40
Consensus pattern (80 bp):
AGTCATTTTACCCTATAGGGGAATTACAATCATTATAACCTATGTGGATATTTCGGTCACTTTAC
CCTATGGGGTATTTC
Found at i:95271009 original size:27 final size:27
Alignment explanation
Indices: 95270955--95271053 Score: 121
Period size: 27 Copynumber: 3.7 Consensus size: 27
95270945 TTAGTTTACC
*
95270955 AAATTATC-AAAATA-CCTTGGTTTGTA
1 AAATTA-CAAAAATACCCTTGGTTTATA
*
95270981 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACAAAAATACCCTTGGTTTATA
* * * *
95271008 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACAAAAATACCCTTGGTTTATA
95271035 AAATTACAAAAATACCCTT
1 AAATTACAAAAATACCCTT
95271054 TAGGGTAGAA
Statistics
Matches: 63, Mismatches: 8, Indels: 3
0.85 0.11 0.04
Matches are distributed among these distances:
25 1 0.02
26 12 0.19
27 50 0.79
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.32
Consensus pattern (27 bp):
AAATTACAAAAATACCCTTGGTTTATA
Found at i:95271065 original size:27 final size:25
Alignment explanation
Indices: 95271044--95271130 Score: 111
Period size: 27 Copynumber: 3.3 Consensus size: 25
95271034 AAAATTACAA
*
95271044 AAATACCCTTTAGGGTAGAAATGCCG
1 AAATACCCTTTAGGGTAGAAAT-ACG
95271070 AAATACCCTTGTAGGGTAGAAATATCG
1 AAATACCCTT-TAGGGTAGAAATA-CG
*
95271097 AAATACCCCTGTAGGGTAGAAATACCG
1 AAATA-CCCTTTAGGGTAGAAATA-CG
95271124 AAATACC
1 AAATACC
95271131 AAAATACCCC
Statistics
Matches: 55, Mismatches: 3, Indels: 6
0.86 0.05 0.09
Matches are distributed among these distances:
26 12 0.22
27 39 0.71
28 4 0.07
ACGTcount: A:0.38, C:0.20, G:0.21, T:0.22
Consensus pattern (25 bp):
AAATACCCTTTAGGGTAGAAATACG
Found at i:95271153 original size:27 final size:27
Alignment explanation
Indices: 95271123--95271244 Score: 109
Period size: 27 Copynumber: 4.2 Consensus size: 27
95271113 TAGAAATACC
95271123 GAAATACCAAAATACCCCTGTAGGGTA
1 GAAATACCAAAATACCCCTGTAGGGTA
95271150 GAAATACCAAAATACGAAAATACCCCTGTAGGGTA
1 GAAATA-C------C-AAAATACCCCTGTAGGGTA
* * *
95271185 GAATTACTAAAATACCCCTATAGGGTA
1 GAAATACCAAAATACCCCTGTAGGGTA
* * * *
95271212 GAATTATCGAAATACCCTTGTAGGGTA
1 GAAATACCAAAATACCCCTGTAGGGTA
95271239 GAAATA
1 GAAATA
95271245 GAATTACTGA
Statistics
Matches: 78, Mismatches: 9, Indels: 16
0.76 0.09 0.16
Matches are distributed among these distances:
27 51 0.65
28 1 0.01
34 2 0.03
35 24 0.31
ACGTcount: A:0.42, C:0.18, G:0.18, T:0.22
Consensus pattern (27 bp):
GAAATACCAAAATACCCCTGTAGGGTA
Found at i:95271197 original size:35 final size:35
Alignment explanation
Indices: 95271089--95271199 Score: 170
Period size: 35 Copynumber: 3.2 Consensus size: 35
95271079 TGTAGGGTAG
*
95271089 AAATATCG-AAATACCCCTGTAGGGTAGAAATACCG
1 AAATA-CGAAAATACCCCTGTAGGGTAGAAATACCA
*
95271124 AAATACCAAAATACCCCTGTAGGGTAGAAATACCA
1 AAATACGAAAATACCCCTGTAGGGTAGAAATACCA
* *
95271159 AAATACGAAAATACCCCTGTAGGGTAGAATTACTA
1 AAATACGAAAATACCCCTGTAGGGTAGAAATACCA
95271194 AAATAC
1 AAATAC
95271200 CCCTATAGGG
Statistics
Matches: 70, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
34 1 0.01
35 69 0.99
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (35 bp):
AAATACGAAAATACCCCTGTAGGGTAGAAATACCA
Found at i:95271227 original size:124 final size:122
Alignment explanation
Indices: 95271034--95271274 Score: 313
Period size: 124 Copynumber: 2.0 Consensus size: 122
95271024 CCTGGTTTGT
* * * * *
95271034 AAAATTACAAAAATACCCTTTAGGGTAGAAATGCCGAAATACCCTTGTAGGGTAGAAATATCGAA
1 AAAATTACAAAAATACCCTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAAATATCGAA
*
95271099 ATACCCCTGTAGGGTAGAAATACCGAAATACCAAAATACCCCTGTAGGGTAGAAATACC
66 ATACCCCTGTAGGGTAGAAATA--GAAATACCAAAATACCCCTGTAAGGTAGAAATACC
* * * *
95271158 AAAA-TACGAAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTATCGA
1 AAAATTACAAAAATA-CCCTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAAATATCGA
* * ** *
95271222 AATACCCTTGTAGGGTAGAAATAGAATTACTGAAATACTCCTGTAAGGTAGAA
65 AATACCCCTGTAGGGTAGAAATAGAAATACCAAAATACCCCTGTAAGGTAGAA
95271275 CTACTGAGAT
Statistics
Matches: 101, Mismatches: 15, Indels: 4
0.84 0.12 0.03
Matches are distributed among these distances:
122 25 0.25
123 9 0.09
124 67 0.66
ACGTcount: A:0.41, C:0.17, G:0.19, T:0.23
Consensus pattern (122 bp):
AAAATTACAAAAATACCCTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAAATATCGAA
ATACCCCTGTAGGGTAGAAATAGAAATACCAAAATACCCCTGTAAGGTAGAAATACC
Found at i:95271272 original size:60 final size:59
Alignment explanation
Indices: 95271183--95271302 Score: 152
Period size: 60 Copynumber: 2.0 Consensus size: 59
95271173 CCCTGTAGGG
* *
95271183 TAGAATTACTAAAATACCCCTATAGGGTAGAATTA-TCGAAATACCCTTGTAGGGTAGAAA
1 TAGAATTACTAAAATACCCCTATAAGGTAGAACTACT-GAAATACCCTTGTAGGGTA-AAA
* * * * *
95271243 TAGAATTACTGAAATACTCCTGTAAGGTAGAACTACTGAGATACCCTTGTGGGGTAAAA
1 TAGAATTACTAAAATACCCCTATAAGGTAGAACTACTGAAATACCCTTGTAGGGTAAAA
95271302 T
1 T
95271303 TACCATTTTA
Statistics
Matches: 52, Mismatches: 7, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
59 4 0.08
60 47 0.90
61 1 0.02
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.28
Consensus pattern (59 bp):
TAGAATTACTAAAATACCCCTATAAGGTAGAACTACTGAAATACCCTTGTAGGGTAAAA
Found at i:95271298 original size:87 final size:88
Alignment explanation
Indices: 95271132--95271304 Score: 206
Period size: 87 Copynumber: 2.0 Consensus size: 88
95271122 CGAAATACCA
* *
95271132 AAATACCCCTGTAGGGTAGAAATACCAAAATACGAAAATACCCCTGTAGGGTAGAATTACTAAAA
1 AAATACCCCTGTAGGGTAGAAATA-CAAAATACGAAAATACCCCTGTAAGGTAGAACTACTAAAA
*
95271197 TACCCCTATAGGGTAGAATTATCG
65 TACCCCTATAGGGTAAAATTATCG
* * * * * *
95271221 AAATACCCTTGTAGGGTAGAAATA-GAATTACTG-AAATACTCCTGTAAGGTAGAACTACTGAGA
1 AAATACCCCTGTAGGGTAGAAATACAAAATAC-GAAAATACCCCTGTAAGGTAGAACTACTAAAA
* * *
95271284 TACCCTTGTGGGGTAAAATTA
65 TACCCCTATAGGGTAAAATTA
95271305 CCATTTTACC
Statistics
Matches: 71, Mismatches: 12, Indels: 4
0.82 0.14 0.05
Matches are distributed among these distances:
87 47 0.66
88 1 0.01
89 23 0.32
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.25
Consensus pattern (88 bp):
AAATACCCCTGTAGGGTAGAAATACAAAATACGAAAATACCCCTGTAAGGTAGAACTACTAAAAT
ACCCCTATAGGGTAAAATTATCG
Found at i:95271670 original size:26 final size:27
Alignment explanation
Indices: 95271641--95271700 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
95271631 CCACATATAT
*
95271641 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
95271667 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
95271694 ATATCTG
1 ATATCTG
95271701 GAAGGCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:95271913 original size:25 final size:25
Alignment explanation
Indices: 95271847--95271916 Score: 113
Period size: 25 Copynumber: 2.8 Consensus size: 25
95271837 TTACCTGATA
*
95271847 CTGATTCTGATTCTAATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
95271872 CTAATTCTGATTCTGATTCTGTCAC
1 CTGATTCTGATTCTGATTCTGTCAC
*
95271897 CTGATTCTGATTTTGATTCT
1 CTGATTCTGATTCTGATTCT
95271917 AGTTTTGATA
Statistics
Matches: 41, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 41 1.00
ACGTcount: A:0.19, C:0.21, G:0.13, T:0.47
Consensus pattern (25 bp):
CTGATTCTGATTCTGATTCTGTCAC
Found at i:95271914 original size:31 final size:30
Alignment explanation
Indices: 95271819--95271916 Score: 89
Period size: 31 Copynumber: 3.4 Consensus size: 30
95271809 TTGCATTCAC
* * * *
95271819 ATTCTAATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGAT-CTG
*
95271850 ATTCTGATTCTAATTCTGTCACCT-A----
1 ATTCTGATTCTGATTCTGTCACCTGATCTG
95271875 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGA-TCTG
*
95271906 ATTTTGATTCT
1 ATTCTGATTCT
95271917 AGTTTTGATA
Statistics
Matches: 54, Mismatches: 7, Indels: 12
0.74 0.10 0.16
Matches are distributed among these distances:
25 23 0.43
26 1 0.02
30 1 0.02
31 29 0.54
ACGTcount: A:0.20, C:0.18, G:0.12, T:0.49
Consensus pattern (30 bp):
ATTCTGATTCTGATTCTGTCACCTGATCTG
Found at i:95273903 original size:27 final size:27
Alignment explanation
Indices: 95273873--95273970 Score: 142
Period size: 27 Copynumber: 3.6 Consensus size: 27
95273863 TTAGTTTACC
95273873 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
* * *
95273900 AAATTACTAAAATACCCTTGGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTA
*
95273927 AAATCACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTGGTTTGTA
**
95273954 AAATTACTGAAATACCC
1 AAATTACCAAAATACCC
95273971 TTGTAGGGTA
Statistics
Matches: 61, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 61 1.00
ACGTcount: A:0.40, C:0.21, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTGGTTTGTA
Found at i:95273990 original size:27 final size:27
Alignment explanation
Indices: 95273958--95274199 Score: 247
Period size: 27 Copynumber: 8.7 Consensus size: 27
95273948 TTTGTAAAAT
*
95273958 TACTGAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
* *
95273985 TGCTGAAATACCCTTGTAGGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
** *
95274012 TACCAAAATACCCCTATAGGGTAGAAA
1 TACTGAAATACCCCTGTAGGGTAGAAA
95274039 TACCAAAATACCGAAATACCCCTGTAGGGTAGAAA
1 TA-C----T---GAAATACCCCTGTAGGGTAGAAA
*
95274074 TACTGAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAA
* *
95274101 TACTAAAATACCCCTGTAGGGTAGAAT
1 TACTGAAATACCCCTGTAGGGTAGAAA
* *
95274128 TA-TCAAAATA-CCCTGGTAAGGTAGAAA
1 TACT-GAAATACCCCT-GTAGGGTAGAAA
*
95274155 TA-TCGAAATACCCCTGTAGGGTAGAAT
1 TACT-GAAATACCCCTGTAGGGTAGAAA
*
95274182 TACTGAAATACTCCTGTA
1 TACTGAAATACCCCTGTA
95274200 ATATAGAATT
Statistics
Matches: 186, Mismatches: 17, Indels: 24
0.82 0.07 0.11
Matches are distributed among these distances:
26 5 0.03
27 150 0.81
28 6 0.03
30 1 0.01
34 1 0.01
35 23 0.12
ACGTcount: A:0.38, C:0.19, G:0.19, T:0.24
Consensus pattern (27 bp):
TACTGAAATACCCCTGTAGGGTAGAAA
Found at i:95274056 original size:35 final size:35
Alignment explanation
Indices: 95274009--95274085 Score: 118
Period size: 35 Copynumber: 2.2 Consensus size: 35
95273999 TGTAGGGTAG
95274009 AAATACCAAAATACCCCTATAGGGTAGAAATACCA
1 AAATACCAAAATACCCCTATAGGGTAGAAATACCA
* * **
95274044 AAATACCGAAATACCCCTGTAGGGTAGAAATACTG
1 AAATACCAAAATACCCCTATAGGGTAGAAATACCA
95274079 AAATACC
1 AAATACC
95274086 CCTGTAGGGT
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
35 38 1.00
ACGTcount: A:0.45, C:0.22, G:0.14, T:0.18
Consensus pattern (35 bp):
AAATACCAAAATACCCCTATAGGGTAGAAATACCA
Found at i:95274066 original size:62 final size:62
Alignment explanation
Indices: 95273989--95274112 Score: 194
Period size: 62 Copynumber: 2.0 Consensus size: 62
95273979 TAGAAATGCT
*
95273989 GAAATACCCTTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAAATACCAAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAAATACCAAAATACC
** * * *
95274051 GAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACC
1 GAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAAATACCAAAATACC
95274113 CCTGTAGGGT
Statistics
Matches: 56, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
62 56 1.00
ACGTcount: A:0.41, C:0.20, G:0.18, T:0.21
Consensus pattern (62 bp):
GAAATACCCCTGTAGGGTAGAAATACCAAAATACCCCTATAGGGTAGAAATACCAAAATACC
Found at i:95274080 original size:89 final size:89
Alignment explanation
Indices: 95273953--95274139 Score: 284
Period size: 89 Copynumber: 2.1 Consensus size: 89
95273943 CCTGGTTTGT
* * * *
95273953 AAAATTACTGAAATACCCTTGTAGGGTAGAAATGCTGAAATACCCTTGTAGGGTAGAAATACCAA
1 AAAA-TACCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAAATACCAA
95274018 AATACCCCTATAGGGTAGAAATACC
65 AATACCCCTATAGGGTAGAAATACC
* *
95274043 AAAATACCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAA
1 AAAATACCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAAATACCAAA
* * *
95274108 ATACCCCTGTAGGGTAGAATTATC
66 ATACCCCTATAGGGTAGAAATACC
95274132 AAAATACC
1 AAAATACC
95274140 CTGGTAAGGT
Statistics
Matches: 88, Mismatches: 9, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
89 84 0.95
90 4 0.05
ACGTcount: A:0.40, C:0.19, G:0.18, T:0.23
Consensus pattern (89 bp):
AAAATACCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAAATACCAAA
ATACCCCTATAGGGTAGAAATACC
Found at i:95274191 original size:81 final size:80
Alignment explanation
Indices: 95274052--95274222 Score: 236
Period size: 81 Copynumber: 2.1 Consensus size: 80
95274042 CAAAATACCG
*
95274052 AAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTG
1 AAATA-CCCTGTAAGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTG
* *
95274117 TAGGGTAGAATTATCA
65 TAAGATAGAATTATCA
* *
95274133 AAATACCCTGGTAAGGTAGAAATA-TCGAAATACCCCTGTAGGGTAGAATTACTGAAATACTCCT
1 AAATACCCT-GTAAGGTAGAAATACT-GAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCT
* *
95274197 GTAATATAGAATTATCG
64 GTAAGATAGAATTATCA
*
95274214 AGATACCCT
1 AAATACCCT
95274223 TGTGGGGTAA
Statistics
Matches: 80, Mismatches: 8, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
80 5 0.06
81 75 0.94
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.26
Consensus pattern (80 bp):
AAATACCCTGTAAGGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTGT
AAGATAGAATTATCA
Found at i:95274207 original size:54 final size:53
Alignment explanation
Indices: 95274044--95274238 Score: 214
Period size: 54 Copynumber: 3.6 Consensus size: 53
95274034 AGAAATACCA
* * *
95274044 AAATACCGAAATACCCCTGTAGGGTAGAAATACTGAAATACCCCTGTAGGGTAG
1 AAATATCGAAATACCCCTGTAGGGTAGAATTACTGAAATA-CCCTGTAAGGTAG
* * *
95274098 AATTA-CTAAAATACCCCTGTAGGGTAGAATTA-TCAAAATACCCTGGTAAGGTAG
1 AAATATC-GAAATACCCCTGTAGGGTAGAATTACT-GAAATACCCT-GTAAGGTAG
**
95274152 AAATATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACTCCTGTAATATAG
1 AAATATCGAAATACCCCTGTAGGGTAGAATTACTGAAATAC-CCTGTAAGGTAG
* * * * *
95274206 AATTATCGAGATACCCTTGTGGGGTAAAATTAC
1 AAATATCGAAATACCCCTGTAGGGTAGAATTAC
95274239 CATTTTACCC
Statistics
Matches: 120, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
53 6 0.05
54 109 0.91
55 5 0.04
ACGTcount: A:0.37, C:0.17, G:0.19, T:0.26
Consensus pattern (53 bp):
AAATATCGAAATACCCCTGTAGGGTAGAATTACTGAAATACCCTGTAAGGTAG
Found at i:95274219 original size:27 final size:26
Alignment explanation
Indices: 95274050--95274222 Score: 145
Period size: 27 Copynumber: 6.4 Consensus size: 26
95274040 ACCAAAATAC
* *
95274050 CGAAATACCCCTGTAGGGTAGAAATA-
1 CGAAATA-CCCTGTAAGGTAGAATTAT
*
95274076 CTGAAATACCCCTGTAGGGTAGAATTA-
1 C-GAAATA-CCCTGTAAGGTAGAATTAT
* *
95274103 CTAAAATACCCCTGTAGGGTAGAATTAT
1 C-GAAATA-CCCTGTAAGGTAGAATTAT
* *
95274131 CAAAATACCCTGGTAAGGTAGAAATAT
1 CGAAATACCCT-GTAAGGTAGAATTAT
*
95274158 CGAAATACCCCTGTAGGGTAGAATTA-
1 CGAAATA-CCCTGTAAGGTAGAATTAT
**
95274184 CTGAAATACTCCTGTAATATAGAATTAT
1 C-GAAATAC-CCTGTAAGGTAGAATTAT
*
95274212 CGAGATACCCT
1 CGAAATACCCT
95274223 TGTGGGGTAA
Statistics
Matches: 129, Mismatches: 11, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
26 10 0.08
27 113 0.88
28 6 0.05
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (26 bp):
CGAAATACCCTGTAAGGTAGAATTAT
Found at i:95274791 original size:31 final size:31
Alignment explanation
Indices: 95274756--95274834 Score: 113
Period size: 31 Copynumber: 2.5 Consensus size: 31
95274746 TTGCATTCAC
* * *
95274756 ATTCTGATTTTGATTTTGTTACCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
* *
95274787 ATTCTGATTCTAATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTG
95274818 ATTCTGATTCTGATTCT
1 ATTCTGATTCTGATTCT
95274835 CATTTTGATT
Statistics
Matches: 42, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.19, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTG
Found at i:95274795 original size:6 final size:6
Alignment explanation
Indices: 95274756--95274846 Score: 69
Period size: 6 Copynumber: 14.8 Consensus size: 6
95274746 TTGCATTCAC
* * * *
95274756 ATTCTG ATTTTG ATTTTG -TTACCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
95274805 -TCACCTG ATTCTG ATTCTG ATTCTG ATTCTC ATTTTG ATTCT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCTG ATTCT
95274847 AGTTTTGATA
Statistics
Matches: 67, Mismatches: 12, Indels: 12
0.74 0.13 0.13
Matches are distributed among these distances:
5 3 0.04
6 57 0.85
7 5 0.07
8 2 0.03
ACGTcount: A:0.19, C:0.18, G:0.13, T:0.51
Consensus pattern (6 bp):
ATTCTG
Found at i:95279153 original size:40 final size:39
Alignment explanation
Indices: 95279109--95279264 Score: 215
Period size: 39 Copynumber: 3.9 Consensus size: 39
95279099 AGTGACCATA
*
95279109 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
*
95279149 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
* *
95279188 TCC-GAGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGA-CTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
** *
95279227 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGACTAAG-CCCGAAGGCATTTGTGCGAGATACTA
95279265 TAACCGGGCT
Statistics
Matches: 106, Mismatches: 7, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
38 1 0.01
39 68 0.64
40 37 0.35
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGACTAAGCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:95279264 original size:79 final size:81
Alignment explanation
Indices: 95279069--95279292 Score: 264
Period size: 79 Copynumber: 2.8 Consensus size: 81
95279059 TTGAATGATG
* * * *
95279069 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-CATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAATATCCGGACTAAGACCCGAAGGCAT
*
95279132 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
*
95279149 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCC-GAGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGA-CTAAGACCCGAAGGCAT
*
95279210 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * * *
95279227 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAAGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGACTAAGACCCGAAGGCATT
95279291 TG
66 TG
95279293 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
78 39 0.31
79 51 0.41
80 34 0.27
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATATCCGGACTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:95279299 original size:40 final size:40
Alignment explanation
Indices: 95279069--95279292 Score: 269
Period size: 40 Copynumber: 5.7 Consensus size: 40
95279059 TTGAATGATG
* * * *
95279069 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
95279109 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
95279149 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
95279188 TCCGAGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
95279227 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
95279268 -CCGGGCTATGTCCCGAAAGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
95279293 AACGAGTAGC
Statistics
Matches: 163, Mismatches: 16, Indels: 10
0.86 0.08 0.05
Matches are distributed among these distances:
39 72 0.44
40 81 0.50
41 10 0.06
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:95279314 original size:79 final size:79
Alignment explanation
Indices: 95279122--95279325 Score: 209
Period size: 79 Copynumber: 2.6 Consensus size: 79
95279112 GGACTAAGAT
* ** * * *
95279122 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTA
1 CCGAAAGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
*
95279186 ATTCCGAGCTAAGC
66 ATACCGAGCTAAGC
* ** *
95279200 CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-
1 CCGAAAGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
* *
95279264 ATAACCGGGCTATGTC
66 AT-ACCGAGCTAAG-C
* * *
95279280 CCGAAAGCATTTGAACGAG-TAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGAAAGCATTTGAACGAGTTA-CTAAATCCGGGTTAAGTCCCGAAGG
95279326 TACGTGATTT
Statistics
Matches: 109, Mismatches: 13, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
78 37 0.34
79 48 0.44
80 24 0.22
ACGTcount: A:0.27, C:0.22, G:0.26, T:0.25
Consensus pattern (79 bp):
CCGAAAGCATTTGAACGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTA
ATACCGAGCTAAGC
Found at i:95281209 original size:56 final size:56
Alignment explanation
Indices: 95281147--95281269 Score: 183
Period size: 56 Copynumber: 2.2 Consensus size: 56
95281137 GACAATGGCA
* *
95281147 TCGATATATGTCTGCAAGTAAGACCACGTTTAATATGTTCGCATCGATATGTGACT
1 TCGATATATGTCTACAAGTAAGACCACGTTTAATACGTTCGCATCGATATGTGACT
* * *
95281203 TCGATATATGTGTACGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACT
1 TCGATATATGTCTACAAGTAAGACCACGTTTAATACGTTCGCATCGATATGTGACT
* *
95281259 CCAATATATGT
1 TCGATATATGT
95281270 GTGATTGTAA
Statistics
Matches: 60, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
56 60 1.00
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (56 bp):
TCGATATATGTCTACAAGTAAGACCACGTTTAATACGTTCGCATCGATATGTGACT
Found at i:95281270 original size:56 final size:54
Alignment explanation
Indices: 95281163--95281312 Score: 178
Period size: 56 Copynumber: 2.7 Consensus size: 54
95281153 TATGTCTGCA
* * * *
95281163 AGTAAGACCACGTTTAATATGTTCGCATCGATATGTGACTTCGATATATGTGTACG
1 AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCCAATATATGTGT--G
95281219 AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCCAATATATGTGTG
1 AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCCAATATATGTGTG
* *
95281273 ATTGTAAGACC-CTGTCTAAGACAG-TGGCATCGATATGTGA
1 A--GTAAGACCAC-GTTTAATAC-GTTGGCATCGATATGTGA
95281313 TTACATGTAA
Statistics
Matches: 84, Mismatches: 6, Indels: 8
0.86 0.06 0.08
Matches are distributed among these distances:
54 2 0.02
55 1 0.01
56 80 0.95
57 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.31
Consensus pattern (54 bp):
AGTAAGACCACGTTTAATACGTTGGCATCGATATGTGACTCCAATATATGTGTG
Found at i:95286591 original size:46 final size:46
Alignment explanation
Indices: 95286541--95286713 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
95286531 TGGTTGAGCA
95286541 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * * *
95286587 TCCAAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGG
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAA-T--G
* *
95286632 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 --TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
95286680 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTA
95286714 GGGGTGGGTT
Statistics
Matches: 106, Mismatches: 12, Indels: 18
0.78 0.09 0.13
Matches are distributed among these distances:
42 2 0.02
43 5 0.05
45 3 0.03
46 60 0.57
47 27 0.25
48 3 0.03
50 4 0.04
51 2 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.29
Consensus pattern (46 bp):
TCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:95286697 original size:93 final size:93
Alignment explanation
Indices: 95286538--95286708 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
95286528 GGATGGTTGA
* *
95286538 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCCAAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
*
95286603 TGAGTCTGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* * *
95286631 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCGAGCTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
95286696 TGAGTCCGAGTTC
66 TGAGTCCGAGTTC
95286709 ACTTAGGGGT
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCCAAACTCGTTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:95292154 original size:40 final size:40
Alignment explanation
Indices: 95292099--95292323 Score: 317
Period size: 40 Copynumber: 5.6 Consensus size: 40
95292089 TATTCGGATG
95292099 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
*
95292139 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTTCCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
*
95292179 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC--G-AGTTCCT
* * * **
95292222 ATACCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
* * *
95292262 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
*
95292302 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
95292324 TACTTGTGTT
Statistics
Matches: 165, Mismatches: 17, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
39 14 0.08
40 115 0.70
43 36 0.22
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCT
Found at i:95292342 original size:83 final size:80
Alignment explanation
Indices: 95292099--95292323 Score: 344
Period size: 83 Copynumber: 2.8 Consensus size: 80
95292089 TATTCGGATG
* *
95292099 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTCCTATATCCGGGCTAAGTCCCGAAGGCA
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTGCTATATCCGGGCTAAGTCCCGAAGGCA
**
95292164 TTTGTGCTAGTTCCT
66 TTTGTGCTAGTGACT
* *
95292179 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATACCCGGGCTAAGTCTCGAAG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGA--A-TTGCTATATCCGGGCTAAGTCCCGAAG
95292244 GCATTTGTGCTAGTGACT
63 GCATTTGTGCTAGTGACT
* *
95292262 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAATTGCTATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTGCTATATCCGGGCTAAGTCCCGAAGG
95292324 TACTTGTGTT
Statistics
Matches: 132, Mismatches: 10, Indels: 7
0.89 0.07 0.05
Matches are distributed among these distances:
79 14 0.11
80 44 0.33
81 1 0.01
83 73 0.55
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAATTGCTATATCCGGGCTAAGTCCCGAAGGCA
TTTGTGCTAGTGACT
Found at i:95300317 original size:40 final size:40
Alignment explanation
Indices: 95300262--95300446 Score: 232
Period size: 40 Copynumber: 4.6 Consensus size: 40
95300252 TATTCGGATG
*
95300262 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
95300302 ATATCCGGGCGAAGTCCCGAAGGCATTTGTGCGAGTAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC---TAG-TGACT
*
95300345 ATACCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * * *
95300385 ATATCCGTGCTAAGACCCGAAGGCATTTGTGCGAATTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-TAGTGACT
*
95300425 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
95300447 TACTTGGGTT
Statistics
Matches: 127, Mismatches: 12, Indels: 13
0.84 0.08 0.09
Matches are distributed among these distances:
39 15 0.12
40 73 0.57
41 3 0.02
43 34 0.27
44 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:95300405 original size:83 final size:80
Alignment explanation
Indices: 95300266--95300446 Score: 274
Period size: 83 Copynumber: 2.2 Consensus size: 80
95300256 CGGATGATAT
* *
95300266 CCGGGCTAAGTCCCGAAGGCATTTGTGCTTGTGACTATATCCGGGCGAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
95300331 TGCGAGTAGTTGCTATAC
66 TGCGA--A-TTGCTATAC
* *
95300349 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGTGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
*
95300414 TGCGAATTGCTATAT
66 TGCGAATTGCTATAC
*
95300429 CC-GGCTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
95300447 TACTTGGGTT
Statistics
Matches: 92, Mismatches: 6, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
79 15 0.16
80 10 0.11
81 1 0.01
83 66 0.72
ACGTcount: A:0.23, C:0.24, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCGGGCGAAGACCCGAAGGCATTTG
TGCGAATTGCTATAC
Found at i:95304523 original size:2 final size:2
Alignment explanation
Indices: 95304516--95304544 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
95304506 CAAGTATGGT
95304516 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC T
95304545 ATGTATATAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:95325099 original size:46 final size:46
Alignment explanation
Indices: 95325031--95325341 Score: 173
Period size: 49 Copynumber: 6.6 Consensus size: 46
95325021 TATGTGTACT
**
95325031 AGTGTAAGACATGTCTAAGACATGCATCGGCCAC-ATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACGATTATGAGAGCC
* ** ** ** * *
95325077 AGTGTAAGACATGTCTGGGACATGTATCGATATTAAGACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGCCACGATTATGAGAGCC
* * * *
95325123 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATAT-ACAAGCT
1 AGTGTAAGACATGTCTGGGACATGCATC-GCCACGA-TTATGA-GAGCC
* * * * ** * *
95325171 AGTGTAAGACCTGTCTGGGACATG--GCGCCA-GCTTGTTCTGTGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGCCACGATT-ATGAGAGCC
* * * *
95325215 AGTGTAAGACTTGTCTAGGACATGGCATCGACACCGATGGATGAGAGCC
1 AGTGTAAGACATGTCTGGGACAT-GCATCGCCA-CGAT-TATGAGAGCC
* * * * **
95325264 AGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGATATATGAAAGTT
1 AGTGTAAGACATGTCTGGGACAT-GCATC-GCCACGAT-TATGAGAGCC
*
95325313 AGTGTAAGACTTGTCTGGGACATGGCATC
1 AGTGTAAGACATGTCTGGGACAT-GCATC
95325342 AACTTTGATG
Statistics
Matches: 199, Mismatches: 53, Indels: 23
0.72 0.19 0.08
Matches are distributed among these distances:
43 1 0.01
44 24 0.12
45 6 0.03
46 61 0.31
47 7 0.04
48 29 0.15
49 69 0.35
50 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.28, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCGCCACGATTATGAGAGCC
Found at i:95325286 original size:49 final size:49
Alignment explanation
Indices: 95325214--95325386 Score: 163
Period size: 49 Copynumber: 3.6 Consensus size: 49
95325204 TGTTCTGTGT
* * *
95325214 CAGTGTAAGACTTGTCTAGGACATGGCATCGACAC-CGATGGATGAGAGC
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * * * *
95325263 CAGTGTAAGACCTATCTGGGACATGGCATCGGCCTCGATATATGAAAGT
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* * * * **
95325312 TAGTGTAAGACTTGTCTGGGACATGGCATCAACTTTGAT-G-TGCTAGC
1 CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* *
95325359 CAGTGTAAGACCATGTTTGGGACATGGC
1 CAGTGTAAGA-CTTGTCTGGGACATGGC
95325387 GTCGGCATCT
Statistics
Matches: 100, Mismatches: 22, Indels: 5
0.79 0.17 0.04
Matches are distributed among these distances:
47 13 0.13
48 16 0.16
49 71 0.71
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (49 bp):
CAGTGTAAGACTTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:95328763 original size:25 final size:25
Alignment explanation
Indices: 95328735--95328782 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
95328725 TAAACTCGAG
*
95328735 AATTCTCTAGAAAATCTTTGTGGCA
1 AATTCCCTAGAAAATCTTTGTGGCA
* *
95328760 AATTCCCTGGAAAGTCTTTGTGG
1 AATTCCCTAGAAAATCTTTGTGG
95328783 TGTATCATTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.27, C:0.17, G:0.21, T:0.35
Consensus pattern (25 bp):
AATTCCCTAGAAAATCTTTGTGGCA
Found at i:95328829 original size:50 final size:50
Alignment explanation
Indices: 95328751--95328873 Score: 165
Period size: 50 Copynumber: 2.5 Consensus size: 50
95328741 CTAGAAAATC
* * * * * *
95328751 TTTGTGGCAAATTCCCTGGAAAGTCTTTGTGGTGTATCATTTGGAAAGCT
1 TTTGTGGCGAATTCTCTAGAAAGCCTTTGTGGTGTACCATTTGGAAAACT
*
95328801 TTTGTGGCGAATTCTTTAGAAAGCCTTTGTGGTGTACCATTTGGAAAACT
1 TTTGTGGCGAATTCTCTAGAAAGCCTTTGTGGTGTACCATTTGGAAAACT
* *
95328851 TTTGTAGCGAATTATCTAGAAAG
1 TTTGTGGCGAATTCTCTAGAAAG
95328874 TCATTGTAGT
Statistics
Matches: 63, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
50 63 1.00
ACGTcount: A:0.25, C:0.13, G:0.24, T:0.37
Consensus pattern (50 bp):
TTTGTGGCGAATTCTCTAGAAAGCCTTTGTGGTGTACCATTTGGAAAACT
Found at i:95328854 original size:25 final size:25
Alignment explanation
Indices: 95328767--95328855 Score: 92
Period size: 25 Copynumber: 3.6 Consensus size: 25
95328757 GCAAATTCCC
95328767 TGGAAAG-TCTTTGTGGTGTATCATT
1 TGGAAAGCT-TTTGTGGTGTATCATT
* *
95328792 TGGAAAGCTTTTGTGGCGAATTC-TT
1 TGGAAAGCTTTTGTGGTGTA-TCATT
* * *
95328817 TAGAAAGCCTTTGTGGTGTACCATT
1 TGGAAAGCTTTTGTGGTGTATCATT
*
95328842 TGGAAAACTTTTGT
1 TGGAAAGCTTTTGT
95328856 AGCGAATTAT
Statistics
Matches: 51, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
24 1 0.02
25 47 0.92
26 3 0.06
ACGTcount: A:0.22, C:0.11, G:0.26, T:0.40
Consensus pattern (25 bp):
TGGAAAGCTTTTGTGGTGTATCATT
Found at i:95332588 original size:46 final size:46
Alignment explanation
Indices: 95332538--95332713 Score: 203
Period size: 46 Copynumber: 3.8 Consensus size: 46
95332528 TGTTTGGGCA
*
95332538 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*** * * ** *
95332584 TCCGAACTCGTTGAGTTGAGTCCGAGTTCGAGAGATGTA-ACTAGGCA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTC-ACTTATGGATGC-AAACG
* *
95332631 TCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
*
95332677 -CCCAAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 TCCGAA-CTCGTTGAGTTGAGTCCGAGTTCACTTATGG
95332714 GCGGGTTACA
Statistics
Matches: 105, Mismatches: 21, Indels: 8
0.78 0.16 0.06
Matches are distributed among these distances:
45 3 0.03
46 67 0.64
47 35 0.33
ACGTcount: A:0.22, C:0.21, G:0.28, T:0.28
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACG
Found at i:95332693 original size:93 final size:93
Alignment explanation
Indices: 95332534--95332705 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
95332524 AGGATGTTTG
* *
95332534 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAG
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAG
95332599 TTGAGTCCGAGTTCGAGAGATGTAACTA
66 TTGAGTCCGAGTTCGAGAGATGTAACTA
* *
95332627 GGCATCCGAGCTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG-CCCAAGCTCGTTGA
1 GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAA-CTCGTTGA
95332691 GTTGAGTCCGAGTTC
65 GTTGAGTCCGAGTTC
95332706 ACTTATGGGC
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 4 0.05
93 70 0.95
ACGTcount: A:0.22, C:0.22, G:0.29, T:0.27
Consensus pattern (93 bp):
GGCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAACGTCCCAACTCGTTGAG
TTGAGTCCGAGTTCGAGAGATGTAACTA
Found at i:95344633 original size:20 final size:20
Alignment explanation
Indices: 95344608--95344646 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
95344598 ACTAATTTAA
95344608 TTTTTATAATATAATATTTC
1 TTTTTATAATATAATATTTC
* *
95344628 TTTTTATATTATTATATTT
1 TTTTTATAATATAATATTT
95344647 TTCTTATTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.31, C:0.03, G:0.00, T:0.67
Consensus pattern (20 bp):
TTTTTATAATATAATATTTC
Found at i:95344703 original size:3 final size:3
Alignment explanation
Indices: 95344695--95344739 Score: 90
Period size: 3 Copynumber: 15.0 Consensus size: 3
95344685 CATCTAAATA
95344695 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
95344740 ACATATTCCT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 42 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:95346694 original size:24 final size:24
Alignment explanation
Indices: 95346667--95346723 Score: 78
Period size: 24 Copynumber: 2.4 Consensus size: 24
95346657 AAACCTAATT
*
95346667 CTAATCAATGTCAAATATATTATG
1 CTAATAAATGTCAAATATATTATG
* *
95346691 CTAATAAATGTTAAATATATTATA
1 CTAATAAATGTCAAATATATTATG
*
95346715 TTAATAAAT
1 CTAATAAAT
95346724 ACTAAATCTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.47, C:0.07, G:0.05, T:0.40
Consensus pattern (24 bp):
CTAATAAATGTCAAATATATTATG
Found at i:95346729 original size:24 final size:24
Alignment explanation
Indices: 95346679--95346730 Score: 68
Period size: 24 Copynumber: 2.2 Consensus size: 24
95346669 AATCAATGTC
* **
95346679 AAATATATTATGCTAATAAATGTT
1 AAATATATTATACTAATAAATACT
*
95346703 AAATATATTATATTAATAAATACT
1 AAATATATTATACTAATAAATACT
95346727 AAAT
1 AAAT
95346731 CTTCTAGAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
24 24 1.00
ACGTcount: A:0.52, C:0.04, G:0.04, T:0.40
Consensus pattern (24 bp):
AAATATATTATACTAATAAATACT
Found at i:95346826 original size:20 final size:20
Alignment explanation
Indices: 95346801--95346846 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 20
95346791 TCACACAACT
95346801 CTAAAATTAACATGCTAAGG
1 CTAAAATTAACATGCTAAGG
*
95346821 CTAAAA-TGACATGCTAAGG
1 CTAAAATTAACATGCTAAGG
95346840 CTAAAAT
1 CTAAAAT
95346847 CTTTATTGTT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
19 18 0.75
20 6 0.25
ACGTcount: A:0.46, C:0.15, G:0.15, T:0.24
Consensus pattern (20 bp):
CTAAAATTAACATGCTAAGG
Found at i:95354339 original size:16 final size:16
Alignment explanation
Indices: 95354302--95354356 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
95354292 TTTAAAGGAC
*
95354302 TTTTAATTAAGTTTTCA
1 TTTTAATT-AGTTTGCA
*
95354319 GTTTAATTAGTTTGCA
1 TTTTAATTAGTTTGCA
95354335 TTTTAATTTATGTCTTGCA
1 TTTTAA-TTA-GT-TTGCA
95354354 TTT
1 TTT
95354357 AGTGAAGTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
16 12 0.38
17 10 0.31
18 2 0.06
19 8 0.25
ACGTcount: A:0.24, C:0.07, G:0.11, T:0.58
Consensus pattern (16 bp):
TTTTAATTAGTTTGCA
Found at i:95358314 original size:35 final size:36
Alignment explanation
Indices: 95358268--95358338 Score: 126
Period size: 36 Copynumber: 2.0 Consensus size: 36
95358258 TTCGTTCTAC
95358268 CGTTCCAAATTCCCA-CCCCTCCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
*
95358303 CGTTCCAAATTCCCACCCCCTTCCCCAATTTTTCCT
1 CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
95358339 TTCTTCTTTA
Statistics
Matches: 34, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
35 15 0.44
36 19 0.56
ACGTcount: A:0.17, C:0.48, G:0.03, T:0.32
Consensus pattern (36 bp):
CGTTCCAAATTCCCACCCCCTCCCCCAATTTTTCCT
Found at i:95358466 original size:21 final size:22
Alignment explanation
Indices: 95358442--95358494 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 22
95358432 GTCCCACGAG
*
95358442 GCCACGACCACA-GTTCCACAA
1 GCCACAACCACAGGTTCCACAA
*
95358463 GCCACAAACA-AGGTTCCACAA
1 GCCACAACCACAGGTTCCACAA
95358484 GCCACAACCAC
1 GCCACAACCAC
95358495 TGTCAGTTGT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
20 1 0.04
21 26 0.96
ACGTcount: A:0.38, C:0.42, G:0.13, T:0.08
Consensus pattern (22 bp):
GCCACAACCACAGGTTCCACAA
Found at i:95358875 original size:16 final size:16
Alignment explanation
Indices: 95358856--95358886 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
95358846 TACTAATCAA
*
95358856 AGTTTCTATGTTTCTG
1 AGTTTCCATGTTTCTG
95358872 AGTTTCCATGTTTCT
1 AGTTTCCATGTTTCT
95358887 ACCTGTCTTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.13, C:0.16, G:0.16, T:0.55
Consensus pattern (16 bp):
AGTTTCCATGTTTCTG
Found at i:95359035 original size:45 final size:45
Alignment explanation
Indices: 95358965--95359055 Score: 146
Period size: 45 Copynumber: 2.0 Consensus size: 45
95358955 AATTAAATTA
** *
95358965 ACCATTATTAGCAGGTTTAGTTTCATTTAAGTCATGCATATATAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
*
95359010 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATTTAT
1 ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
95359055 A
1 A
95359056 TATATTAATG
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 42 1.00
ACGTcount: A:0.33, C:0.14, G:0.12, T:0.41
Consensus pattern (45 bp):
ACCATTATTAGCAGGTTTAACTTCATTTAAGTCAAGCATATATAT
Found at i:95359099 original size:36 final size:37
Alignment explanation
Indices: 95359057--95359131 Score: 107
Period size: 38 Copynumber: 2.0 Consensus size: 37
95359047 ATATTTATAT
* *
95359057 ATATTAATGC-ATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCAATATATATAATGTTTAGCTTCATTTA
*
95359093 ATATTAATGCATATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCA-ATATATATAATGTTTAGCTTCATTTA
95359131 A
1 A
95359132 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
36 10 0.29
38 24 0.71
ACGTcount: A:0.33, C:0.09, G:0.09, T:0.48
Consensus pattern (37 bp):
ATATTAATGCAATATATATAATGTTTAGCTTCATTTA
Found at i:95359169 original size:43 final size:42
Alignment explanation
Indices: 95359122--95359202 Score: 128
Period size: 42 Copynumber: 1.9 Consensus size: 42
95359112 TAATGTTTTG
*
95359122 CTTCATTTAAGTCATGCGCATAA-TGCATATATATTCCATTTAA
1 CTTCATTTAAGTCAT--GCATAATTGCATATATATACCATTTAA
95359165 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
1 CTTCATTTAAGTCATGCATAATTGCATATATATACCAT
95359203 AATTAGCAGG
Statistics
Matches: 36, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
41 6 0.17
42 15 0.42
43 15 0.42
ACGTcount: A:0.33, C:0.19, G:0.09, T:0.40
Consensus pattern (42 bp):
CTTCATTTAAGTCATGCATAATTGCATATATATACCATTTAA
Found at i:95359331 original size:90 final size:90
Alignment explanation
Indices: 95359237--95359436 Score: 391
Period size: 90 Copynumber: 2.2 Consensus size: 90
95359227 AGCCAAGCAT
95359237 ATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAAT
1 ATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAAT
*
95359302 GTTTTGCTTCATTTAAGTCATGTGC
66 GTTTTGCTTCATTTAAGTCATGCGC
95359327 ATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAAT
1 ATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAAT
95359392 GTTTTGCTTCATTTAAGTCATGCGC
66 GTTTTGCTTCATTTAAGTCATGCGC
95359417 ATATATATATATTAATGCAT
1 ATATATATATATTAATGCAT
95359437 TATGCATATA
Statistics
Matches: 109, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
90 109 1.00
ACGTcount: A:0.34, C:0.10, G:0.10, T:0.46
Consensus pattern (90 bp):
ATATATATATATTAATGCATATGTATACTGTTTAGCTTCATTTAATATTAATGCATATATATAAT
GTTTTGCTTCATTTAAGTCATGCGC
Found at i:95359335 original size:36 final size:36
Alignment explanation
Indices: 95359245--95359317 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
95359235 ATATATATAT
* *
95359245 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
95359281 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
95359317 A
1 A
95359318 GTCATGTGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:95359382 original size:36 final size:36
Alignment explanation
Indices: 95359335--95359407 Score: 119
Period size: 36 Copynumber: 2.0 Consensus size: 36
95359325 GCATATATAT
* *
95359335 ATATTAATGCATATGTATACTGTTTAGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
*
95359371 ATATTAATGCATATATATAATGTTTTGCTTCATTTA
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTA
95359407 A
1 A
95359408 GTCATGCGCA
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.33, C:0.10, G:0.10, T:0.48
Consensus pattern (36 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTA
Found at i:95359382 original size:54 final size:54
Alignment explanation
Indices: 95359281--95359389 Score: 150
Period size: 54 Copynumber: 2.0 Consensus size: 54
95359271 GCTTCATTTA
* *
95359281 ATATTAATGCATATATATAATGTTTTGCTTCATTTAAGTCATGTGCATATATAT
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTAAGTCATATGCATATATAT
* *
95359335 ATATTAATGCATATGTATACTGTTTAGCTTCATTTAA-T-ATTAATGCATATATAT
1 ATATTAATGCATATATATAATGTTTAGCTTCATTTAAGTCA-T-ATGCATATATAT
95359389 A
1 A
95359390 ATGTTTTGCT
Statistics
Matches: 49, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
52 1 0.02
53 2 0.04
54 46 0.94
ACGTcount: A:0.35, C:0.09, G:0.10, T:0.46
Consensus pattern (54 bp):
ATATTAATGCATATATATAATGTTTAGCTTCATTTAAGTCATATGCATATATAT
Found at i:95359444 original size:61 final size:58
Alignment explanation
Indices: 95359377--95359488 Score: 152
Period size: 61 Copynumber: 1.9 Consensus size: 58
95359367 TTTAATATTA
** *
95359377 ATGCATATATATAATGTTTTGCTTCATTTAAGTCATGCGCATATATATATATTAATGCATT
1 ATGCATATATATAACATTTAGCTTCATTTAAGTCAT--GCATATAT-TATATTAATGCATT
**
95359438 ATGCATATATATTCCATTTAGCTTCATTTAAGTCATGCATATATTATATTA
1 ATGCATATATATAACATTTAGCTTCATTTAAGTCATGCATATATTATATTA
95359489 TATATATTAT
Statistics
Matches: 46, Mismatches: 5, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
58 7 0.15
59 8 0.17
61 31 0.67
ACGTcount: A:0.33, C:0.12, G:0.10, T:0.45
Consensus pattern (58 bp):
ATGCATATATATAACATTTAGCTTCATTTAAGTCATGCATATATTATATTAATGCATT
Done.