Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 284 of 297
Found at i:96516035 original size:15 final size:14
Alignment explanation
Indices: 96516012--96516041 Score: 51
Period size: 15 Copynumber: 2.1 Consensus size: 14
96516002 TGAGTTTTCG
96516012 AAAAAAAAGAAAAA
1 AAAAAAAAGAAAAA
96516026 AAAAAGAAAGAAAAA
1 AAAAA-AAAGAAAAA
96516041 A
1 A
96516042 GGGAGAGGCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 5 0.33
15 10 0.67
ACGTcount: A:0.90, C:0.00, G:0.10, T:0.00
Consensus pattern (14 bp):
AAAAAAAAGAAAAA
Found at i:96517209 original size:89 final size:88
Alignment explanation
Indices: 96517080--96517476 Score: 245
Period size: 78 Copynumber: 4.7 Consensus size: 88
96517070 ATTCGACGGA
* *
96517080 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTTCACATCAAAGTAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACAC-T-AAAGCAGATCCAAGATG
96517145 ATTTGGCATC-CTTGCATT-CACAAG
64 ATTTGGCATCTC-TGCATTACACAAG
* ** * * * *
96517169 GAGCAGATCGAAGACATAGCAGATTTGGCTTTC-ACGTGTTTACGCTGAAGCAGATCCAAGATGA
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGA-ATGTTTACACTAAAGCAGATCCAAGATGA
* * **
96517233 TTTGGCATCTCTGTATTAGACGGG
65 TTTGGCATCTCTGCATTACACAAG
* * *
96517257 GAGCAGATCGAAGACACAGCAGATCTGACCTTC--A----T----TGAAGCAGATCCAAGATGAT
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACACTAAAGCAGATCCAAGATGAT
* * * *
96517312 TTGGCATCTCTGTATCAGAC-GG
66 TTGGCATCTCTGCATTACACAAG
* * * *
96517334 GAAGCAGATCAAAGACATAACAGAT-TGGACCTTC--A----T----TGAAGCAGATCCAAGATG
1 G-AGCAGATCGAAGACATAGCAGATCT-AACCTTCGAATGTTTACACTAAAGCAGATCCAAGATG
* * ***
96517388 ATTTGGCATCTCTGTATTAGATGGG
64 ATTTGGCATCTCTGCATTACACAAG
* * *
96517413 GAGCAGATCGAAGACATAGCAGATCTGACCTTC-ATGTGTTTACA-TCGAAGCAGATCCAAGATG
1 GAGCAGATCGAAGACATAGCAGATCTAACCTTCGA-ATGTTTACACT-AAAGCAGATCCAAGATG
96517476 A
64 A
96517477 CAGATTTGGC
Statistics
Matches: 264, Mismatches: 27, Indels: 35
0.81 0.08 0.11
Matches are distributed among these distances:
77 4 0.02
78 134 0.51
79 4 0.02
82 1 0.00
84 1 0.00
87 31 0.12
88 53 0.20
89 36 0.14
ACGTcount: A:0.32, C:0.20, G:0.24, T:0.25
Consensus pattern (88 bp):
GAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTACACTAAAGCAGATCCAAGATGAT
TTGGCATCTCTGCATTACACAAG
Found at i:96517312 original size:78 final size:78
Alignment explanation
Indices: 96517214--96517447 Score: 398
Period size: 78 Copynumber: 3.0 Consensus size: 78
96517204 GTGTTTACGC
*
96517214 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACACAGCAG
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
96517279 ATCTGACCTTCAT
66 ATCTGACCTTCAT
* * * *
96517292 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATCAGACGGGAAGCAGATCAAAGACATAACAG
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
96517357 AT-TGGACCTTCAT
66 ATCT-GACCTTCAT
*
96517370 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCAG
1 TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
96517435 ATCTGACCTTCAT
66 ATCTGACCTTCAT
96517448 GTGTTTACAT
Statistics
Matches: 144, Mismatches: 10, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
77 1 0.01
78 142 0.99
79 1 0.01
ACGTcount: A:0.32, C:0.19, G:0.25, T:0.24
Consensus pattern (78 bp):
TGAAGCAGATCCAAGATGATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGACATAGCAG
ATCTGACCTTCAT
Found at i:96517592 original size:89 final size:89
Alignment explanation
Indices: 96517477--96517646 Score: 304
Period size: 89 Copynumber: 1.9 Consensus size: 89
96517467 TCCAAGATGA
*
96517477 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGATTTGGCATCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
96517542 TAGACGGGGAGCAGATTGGAGAAG
66 TAGACGGGGAGCAGATTGGAGAAG
* * *
96517566 CAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAT
1 CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
96517631 TAGACGGGGAGCAGAT
66 TAGACGGGGAGCAGAT
96517647 CAAAGATAGC
Statistics
Matches: 77, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
89 77 1.00
ACGTcount: A:0.28, C:0.15, G:0.32, T:0.25
Consensus pattern (89 bp):
CAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGAAGATAACAGATTTGGCATCTCTGTAT
TAGACGGGGAGCAGATTGGAGAAG
Found at i:96517653 original size:45 final size:45
Alignment explanation
Indices: 96517387--96517660 Score: 304
Period size: 45 Copynumber: 6.1 Consensus size: 45
96517377 GATCCAAGAT
* *
96517387 GATTTGGCATCTCTGTATTAGATGGGGAGCAGATCGAAGACATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAG--ATAACA
* * * * * * * *
96517434 GATCTGACCT-TCATGTGTTTACATC--GAAGCAGATCCAAGATGACA
1 GATTTGGCATCTC-TGT-ATTAGA-CGGGGAGCAGATCGAAGATAACA
* *
96517479 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
96517524 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATTGGAGA-AGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
*
96517568 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
* * *
96517613 GATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATAGCA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
96517658 GAT
1 GAT
96517661 ATCGCCTTCC
Statistics
Matches: 191, Mismatches: 29, Indels: 16
0.81 0.12 0.07
Matches are distributed among these distances:
43 1 0.01
44 44 0.23
45 116 0.61
46 4 0.02
47 22 0.12
48 4 0.02
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (45 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAGATCGAAGATAACA
Found at i:96517690 original size:89 final size:89
Alignment explanation
Indices: 96517461--96517666 Score: 250
Period size: 89 Copynumber: 2.3 Consensus size: 89
96517451 TTTACATCGA
* * * * * * * *
96517461 AGCAGATCCAAGATGACAGATTTGGCATCTCTGTATTAGACGGGGAGCAAATCGGAGATAACAGA
1 AGCAGATCAAAGAAG-CAGATTCGCCGTCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGA
96517526 TTTGGCATCTCTGTATTAGACGGGG
65 TTTGGCATCTCTGTATTAGACGGGG
*** * * *
96517551 AGCAGATTGGAGAAGCAGATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAGAT
1 AGCAGATCAAAGAAGCAGATTCGCCGTCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGAT
*
96517616 TTGGCGTCTCTGTATTAGACGGGG
66 TTGGCATCTCTGTATTAGACGGGG
96517640 AGCAGATCAAAGATAGCAGATATCGCC
1 AGCAGATCAAAGA-AGCAGAT-TCGCC
96517667 TTCCTGAGTT
Statistics
Matches: 101, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
89 80 0.79
90 18 0.18
91 3 0.03
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (89 bp):
AGCAGATCAAAGAAGCAGATTCGCCGTCTCTGTATTAGACGGGAAGCAGATCGAAGATAACAGAT
TTGGCATCTCTGTATTAGACGGGG
Found at i:96518081 original size:35 final size:37
Alignment explanation
Indices: 96518010--96518107 Score: 150
Period size: 35 Copynumber: 2.7 Consensus size: 37
96518000 ATAATCTTCA
96518010 ATGATATGCAATCTTAGATATGATATGCAATCTTAGAT
1 ATGATA-GCAATCTTAGATATGATATGCAATCTTAGAT
96518048 ATGATA-CAATCTTAGATATGAT-TGCAATCTTAGAT
1 ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
96518083 ATGATATGCAATCTTAGA-A-GATATG
1 ATGATA-GCAATCTTAGATATGATATG
96518108 ATTTTGTAAT
Statistics
Matches: 57, Mismatches: 0, Indels: 8
0.88 0.00 0.12
Matches are distributed among these distances:
35 22 0.39
36 19 0.33
37 10 0.18
38 6 0.11
ACGTcount: A:0.38, C:0.10, G:0.16, T:0.36
Consensus pattern (37 bp):
ATGATAGCAATCTTAGATATGATATGCAATCTTAGAT
Found at i:96518107 original size:17 final size:19
Alignment explanation
Indices: 96518010--96518100 Score: 161
Period size: 19 Copynumber: 4.9 Consensus size: 19
96518000 ATAATCTTCA
96518010 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
96518029 ATGATATGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
96518048 ATGATA--CAATCTTAGAT
1 ATGATATGCAATCTTAGAT
96518065 ATGAT-TGCAATCTTAGAT
1 ATGATATGCAATCTTAGAT
96518083 ATGATATGCAATCTTAGA
1 ATGATATGCAATCTTAGA
96518101 AGATATGATT
Statistics
Matches: 69, Mismatches: 0, Indels: 6
0.92 0.00 0.08
Matches are distributed among these distances:
17 16 0.23
18 16 0.23
19 37 0.54
ACGTcount: A:0.37, C:0.11, G:0.15, T:0.36
Consensus pattern (19 bp):
ATGATATGCAATCTTAGAT
Found at i:96518126 original size:22 final size:22
Alignment explanation
Indices: 96518010--96518123 Score: 96
Period size: 19 Copynumber: 5.8 Consensus size: 22
96518000 ATAATCTTCA
96518010 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
96518029 ATGATATGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
96518048 ATGATA--CAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
96518065 ATGAT-TGCAATCTT---AGAT
1 ATGATATGCAATCTTAGAAGAT
96518083 ATGATATGCAATCTTAGAAGAT
1 ATGATATGCAATCTTAGAAGAT
* *
96518105 ATGATTTTGTAATCTTAGA
1 ATGA-TATGCAATCTTAGA
96518124 GATTTAATTT
Statistics
Matches: 86, Mismatches: 2, Indels: 10
0.88 0.02 0.10
Matches are distributed among these distances:
17 16 0.19
18 16 0.19
19 34 0.40
22 8 0.09
23 12 0.14
ACGTcount: A:0.37, C:0.10, G:0.16, T:0.38
Consensus pattern (22 bp):
ATGATATGCAATCTTAGAAGAT
Found at i:96518414 original size:17 final size:17
Alignment explanation
Indices: 96518390--96518424 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
96518380 TGTTTCCCTG
*
96518390 ATTTTTTTATATATTTTA
1 ATTTTTTAATA-ATTTTA
96518408 ATTTTTTAATAATTTTA
1 ATTTTTTAATAATTTTA
96518425 GTATCATATC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
ATTTTTTAATAATTTTA
Found at i:96519093 original size:13 final size:13
Alignment explanation
Indices: 96519071--96519190 Score: 86
Period size: 13 Copynumber: 9.1 Consensus size: 13
96519061 TGGTTTCGAC
96519071 AATATACATACAT
1 AATATACATACAT
* *
96519084 GATATCCATACAT
1 AATATACATACAT
*
96519097 AATATA-A-ACAAC
1 AATATACATAC-AT
96519109 AATATACATAACAT
1 AATATACAT-ACAT
*
96519123 ACATAAACAGTA-AT
1 A-ATATACA-TACAT
* *
96519137 GTACATAGCATACAT
1 -AATATA-CATACAT
*
96519152 AATATTCATAC-T
1 AATATACATACAT
*
96519164 ACTATACATACAT
1 AATATACATACAT
96519177 AATATACATACAT
1 AATATACATACAT
96519190 A
1 A
96519191 GCAGACATAC
Statistics
Matches: 81, Mismatches: 16, Indels: 20
0.69 0.14 0.17
Matches are distributed among these distances:
11 2 0.02
12 18 0.22
13 35 0.43
14 12 0.15
15 13 0.16
16 1 0.01
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.28
Consensus pattern (13 bp):
AATATACATACAT
Found at i:96519118 original size:25 final size:25
Alignment explanation
Indices: 96519085--96519182 Score: 63
Period size: 25 Copynumber: 3.7 Consensus size: 25
96519075 TACATACATG
*
96519085 ATATCCATACATAATATAAACAACA
1 ATATACATACATAATATAAACAACA
* **
96519110 ATATACATAACAT-ACATAAACAGTA
1 ATATACAT-ACATAATATAAACAACA
* **
96519135 ATGTACATAGCATACATAATATTCATACTA
1 ATATACATA-CATA-AT-ATAAACA-AC-A
*
96519165 CTATACATACATAATATA
1 ATATACATACATAATATA
96519183 CATACATAGC
Statistics
Matches: 54, Mismatches: 12, Indels: 12
0.69 0.15 0.15
Matches are distributed among these distances:
24 1 0.02
25 26 0.48
26 4 0.07
27 4 0.07
28 7 0.13
29 4 0.07
30 8 0.15
ACGTcount: A:0.51, C:0.17, G:0.03, T:0.29
Consensus pattern (25 bp):
ATATACATACATAATATAAACAACA
Found at i:96526302 original size:14 final size:14
Alignment explanation
Indices: 96526267--96526305 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
96526257 TATTAAAACT
*
96526267 CCCTAACCCACTAA
1 CCCTAACCCAATAA
*
96526281 CCCAAACCCAATAA
1 CCCTAACCCAATAA
*
96526295 CCTTAACCCAA
1 CCCTAACCCAA
96526306 CTTGAAAATC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.41, C:0.46, G:0.00, T:0.13
Consensus pattern (14 bp):
CCCTAACCCAATAA
Found at i:96530322 original size:20 final size:20
Alignment explanation
Indices: 96530270--96530312 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
96530260 TGAAATGTCT
96530270 AATGTTGAAAAAGCTTGTGA
1 AATGTTGAAAAAGCTTGTGA
96530290 AATGTTGAAAAAGCTTGTGA
1 AATGTTGAAAAAGCTTGTGA
96530310 AAT
1 AAT
96530313 TATGCAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (20 bp):
AATGTTGAAAAAGCTTGTGA
Found at i:96531223 original size:19 final size:19
Alignment explanation
Indices: 96531199--96531245 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
96531189 AGATTAAAAT
96531199 TTCAGTTAATTTTGGATAA
1 TTCAGTTAATTTTGGATAA
* *
96531218 TTCAGTTGATTTTGGTTAA
1 TTCAGTTAATTTTGGATAA
*
96531237 TTCGGTTAA
1 TTCAGTTAA
96531246 ATGAAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.49
Consensus pattern (19 bp):
TTCAGTTAATTTTGGATAA
Found at i:96532548 original size:34 final size:34
Alignment explanation
Indices: 96532501--96532569 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
96532491 GAGTAATTAG
* *
96532501 TTTTCATTTTTTAAGTTTGGTTATTCCTTATGCA
1 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
96532535 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
1 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
96532569 T
1 T
96532570 GAGTATTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (34 bp):
TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
Found at i:96532578 original size:34 final size:34
Alignment explanation
Indices: 96532504--96532580 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
96532494 TAATTAGTTT
* * **
96532504 TCATTTTTTAAGTTTGGTTATTCCTTATGCATTT
1 TCATTGTTTAAGTTTGGTTATTCCTTACGCATAG
96532538 TCATTGTTTAAGTTTGGTTATTCCTTACGCATGAG
1 TCATTGTTTAAGTTTGGTTATTCCTTACGCAT-AG
96532573 T-ATTGTTT
1 TCATTGTTT
96532581 TACCAGTGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 37 0.97
35 1 0.03
ACGTcount: A:0.18, C:0.12, G:0.16, T:0.55
Consensus pattern (34 bp):
TCATTGTTTAAGTTTGGTTATTCCTTACGCATAG
Found at i:96536784 original size:20 final size:20
Alignment explanation
Indices: 96536732--96536774 Score: 86
Period size: 20 Copynumber: 2.1 Consensus size: 20
96536722 TGAAATGTCT
96536732 AATGTTGAAAAAGCTTGTGA
1 AATGTTGAAAAAGCTTGTGA
96536752 AATGTTGAAAAAGCTTGTGA
1 AATGTTGAAAAAGCTTGTGA
96536772 AAT
1 AAT
96536775 TATGCAAAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.42, C:0.05, G:0.23, T:0.30
Consensus pattern (20 bp):
AATGTTGAAAAAGCTTGTGA
Found at i:96537685 original size:19 final size:19
Alignment explanation
Indices: 96537661--96537707 Score: 67
Period size: 19 Copynumber: 2.5 Consensus size: 19
96537651 AGATTAAAAT
96537661 TTCAGTTAATTTTGGATAA
1 TTCAGTTAATTTTGGATAA
* *
96537680 TTCAGTTGATTTTGGTTAA
1 TTCAGTTAATTTTGGATAA
*
96537699 TTCGGTTAA
1 TTCAGTTAA
96537708 ATGAAAATTA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.26, C:0.06, G:0.19, T:0.49
Consensus pattern (19 bp):
TTCAGTTAATTTTGGATAA
Found at i:96539010 original size:34 final size:34
Alignment explanation
Indices: 96538963--96539031 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
96538953 GAGTAATTAG
* *
96538963 TTTTCATTTTTTAAGTTTGGTTATTCCTTATGCA
1 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
96538997 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
1 TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
96539031 T
1 T
96539032 GAGTATTGTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.17, C:0.13, G:0.13, T:0.57
Consensus pattern (34 bp):
TTTTCATTGTTTAAGTTTGGTTATTCCTTACGCA
Found at i:96539040 original size:34 final size:34
Alignment explanation
Indices: 96538966--96539042 Score: 102
Period size: 34 Copynumber: 2.3 Consensus size: 34
96538956 TAATTAGTTT
* * **
96538966 TCATTTTTTAAGTTTGGTTATTCCTTATGCATTT
1 TCATTGTTTAAGTTTGGTTATTCCTTACGCATAG
96539000 TCATTGTTTAAGTTTGGTTATTCCTTACGCATGAG
1 TCATTGTTTAAGTTTGGTTATTCCTTACGCAT-AG
96539035 T-ATTGTTT
1 TCATTGTTT
96539043 TACCAGTGTA
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
34 37 0.97
35 1 0.03
ACGTcount: A:0.18, C:0.12, G:0.16, T:0.55
Consensus pattern (34 bp):
TCATTGTTTAAGTTTGGTTATTCCTTACGCATAG
Found at i:96544684 original size:27 final size:27
Alignment explanation
Indices: 96544654--96544831 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96544644 ATATTGAGTC
* * * *
96544654 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
96544681 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
96544708 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
96544736 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
96544763 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
96544790 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
96544817 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96544832 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:96544793 original size:82 final size:81
Alignment explanation
Indices: 96544675--96544830 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96544665 TGCTATATAA
* *
96544675 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
96544740 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
96544757 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
96544821 CACTTAGTGC
65 CACTTAGTGC
96544831 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:96552874 original size:27 final size:27
Alignment explanation
Indices: 96552844--96553021 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96552834 ATATTGAGTC
* * * *
96552844 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
96552871 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
96552898 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
96552926 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
96552953 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
96552980 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
96553007 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
96553022 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:96552983 original size:82 final size:81
Alignment explanation
Indices: 96552865--96553020 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96552855 TGCTATATAA
* *
96552865 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
96552930 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
96552947 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
96553011 CACTTAGTGC
65 CACTTAGTGC
96553021 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:96553522 original size:12 final size:12
Alignment explanation
Indices: 96553505--96553531 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
96553495 ATGGCATACT
96553505 TATGTATATATA
1 TATGTATATATA
96553517 TATGTATATATA
1 TATGTATATATA
96553529 TAT
1 TAT
96553532 ACTTCGGAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.41, C:0.00, G:0.07, T:0.52
Consensus pattern (12 bp):
TATGTATATATA
Found at i:96571922 original size:31 final size:32
Alignment explanation
Indices: 96571882--96571955 Score: 82
Period size: 31 Copynumber: 2.4 Consensus size: 32
96571872 ACGTATAGGC
*
96571882 TTATTTTTATTACTT-TATTTCAATATCT-TTA
1 TTATATTTATTACTTGTATTTCAATAT-TGTTA
* * *
96571913 TTGTATTTATT-TTTGTGTTTCAATATTGTTA
1 TTATATTTATTACTTGTATTTCAATATTGTTA
96571944 TTATATTTATTA
1 TTATATTTATTA
96571956 TTATAATAGT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
30 3 0.09
31 32 0.91
ACGTcount: A:0.24, C:0.05, G:0.05, T:0.65
Consensus pattern (32 bp):
TTATATTTATTACTTGTATTTCAATATTGTTA
Found at i:96572266 original size:18 final size:18
Alignment explanation
Indices: 96572223--96572258 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
96572213 AAGTATATCT
*
96572223 TTATGTAATATTAGTATTA
1 TTAT-TAATATTAATATTA
96572242 TTATTAATATTAATATT
1 TTATTAATATTAATATT
96572259 TTTTTTAACA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 12 0.75
19 4 0.25
ACGTcount: A:0.39, C:0.00, G:0.06, T:0.56
Consensus pattern (18 bp):
TTATTAATATTAATATTA
Found at i:96572315 original size:25 final size:22
Alignment explanation
Indices: 96572284--96572341 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
96572274 ATTATATGTG
96572284 TATATATTATGTAAAATGTTTTAA
1 TATATATTATGT-AAATGTTTT-A
* *
96572308 TATTATATTATATATATGTTTTA
1 TA-TATATTATGTAAATGTTTTA
96572331 TATATATTATG
1 TATATATTATG
96572342 AACATGTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 8 0.27
23 3 0.10
24 10 0.33
25 9 0.30
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (22 bp):
TATATATTATGTAAATGTTTTA
Found at i:96572348 original size:22 final size:23
Alignment explanation
Indices: 96572284--96572348 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
96572274 ATTATATGTG
96572284 TATATATTATGTAAAATGTTTTAA
1 TATATATTATG-AAAATGTTTTAA
*
96572308 TATTATATTAT-ATATATGTTTT-A
1 TA-TATATTATGA-AAATGTTTTAA
*
96572331 TATATATTATGAACATGT
1 TATATATTATGAAAATGT
96572349 ATTTTCAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
22 13 0.36
23 5 0.14
24 10 0.28
25 8 0.22
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (23 bp):
TATATATTATGAAAATGTTTTAA
Found at i:96572364 original size:47 final size:46
Alignment explanation
Indices: 96572284--96572385 Score: 104
Period size: 47 Copynumber: 2.2 Consensus size: 46
96572274 ATTATATGTG
*
96572284 TATATATTATGTAAAATGTTTTAATATTATATTA-TATATATGTTTTA
1 TATATATTATGTAAAATGTTTTAATATTATATTAGT-TAAAT-TTTTA
* *
96572331 TATATATTATG-AACATGTATTTTCAATA-T-TATTAGTTAAATTTTTG
1 TATATATTATGTAAAATG--TTTT-AATATTATATTAGTTAAATTTTTA
96572377 TATATATTA
1 TATATATTA
96572386 CCCTATGTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
46 18 0.38
47 20 0.42
48 6 0.12
49 4 0.08
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (46 bp):
TATATATTATGTAAAATGTTTTAATATTATATTAGTTAAATTTTTA
Found at i:96583952 original size:74 final size:72
Alignment explanation
Indices: 96583833--96584075 Score: 281
Period size: 76 Copynumber: 3.3 Consensus size: 72
96583823 CGATTTCTGT
* * * * * *
96583833 TTTTCAATTTATGTTT-TCAAAAATCAATTCATATTGCTATAGGTGAATTGAGCCTCGGGGCATG
1 TTTTCAATTT-TGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACG
96583897 CTGAGGTA
65 CTGAGGTA
96583905 TTTTCAATTATTGTTTGTCAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
1 TTTTCAATT-TTGTTTGTC-AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACAC
96583970 GCTGAGGTA
64 GCTGAGGTA
* * * * *
96583979 TTGTCAATTTTTTATATGTTTCAAATATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGAC
1 TTTTCAATTTTGT-T-TG--TCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGAC
* *
96584044 ACGCTAAGGTG
62 ACGCTGAGGTA
*
96584055 TTTTCAATTTCTGTTTTTCAA
1 TTTTCAATTT-TGTTTGTCAA
96584076 TTTCTGTCCT
Statistics
Matches: 147, Mismatches: 16, Indels: 15
0.83 0.09 0.08
Matches are distributed among these distances:
72 14 0.10
73 10 0.07
74 57 0.39
75 3 0.02
76 59 0.40
77 4 0.03
ACGTcount: A:0.27, C:0.15, G:0.21, T:0.37
Consensus pattern (72 bp):
TTTTCAATTTTGTTTGTCAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCGGGACACGC
TGAGGTA
Found at i:96584074 original size:14 final size:14
Alignment explanation
Indices: 96584055--96584082 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
96584045 CGCTAAGGTG
96584055 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
96584069 TTTTCAATTTCTGT
1 TTTTCAATTTCTGT
96584083 CCTTCAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.14, C:0.14, G:0.07, T:0.64
Consensus pattern (14 bp):
TTTTCAATTTCTGT
Found at i:96584161 original size:91 final size:89
Alignment explanation
Indices: 96584005--96584217 Score: 313
Period size: 91 Copynumber: 2.4 Consensus size: 89
96583995 TGTTTCAAAT
* * **
96584005 ATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTGTTTTCAATTTCTG-T
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATTGATGTT
96584069 TTTTCAATTT-CTGTCCTTCAAAAAAAA
66 TTTTCAATTTAC-G-CCTTC--AAAAAA
* *
96584096 ATCAACTCATATTGCGAGAGGTGAGTTAAGCCTCAGGACACGCTGAGGTATTTTCAATTGATGTT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATTGATGTT
*
96584161 TTTTCAATTTACGCTTTCAAAAAA
66 TTTTCAATTTACGCCTTCAAAAAA
96584185 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
1 ATCAACTCATATTGCGAGAGGTGAGTTGAGCCT
96584218 TGGCTCGCGT
Statistics
Matches: 112, Mismatches: 8, Indels: 6
0.89 0.06 0.05
Matches are distributed among these distances:
89 38 0.34
91 61 0.54
92 12 0.11
93 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.20, T:0.33
Consensus pattern (89 bp):
ATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTAAGGTATTTTCAATTGATGTT
TTTTCAATTTACGCCTTCAAAAAA
Found at i:96584355 original size:73 final size:73
Alignment explanation
Indices: 96584270--96584415 Score: 211
Period size: 73 Copynumber: 2.0 Consensus size: 73
96584260 TGTTTTTTTT
* * * * *
96584270 AAATCAACTCATATTGCGGGAGGCGAGTTGAGCCTCGGGGCAAGCTGAGGTATTTTCAATTGCTG
1 AAATCAACTCATACTGCGAGAGGAGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATTGCTG
96584335 TTTGTCAA
66 TTTGTCAA
* * *
96584343 AAATCAACTCATACTGCGAGAGGAGAGTTGAGCCTCAGGACATGCTGAGGTCTTTTCAATTTCTG
1 AAATCAACTCATACTGCGAGAGGAGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATTGCTG
*
96584408 TTTTTCAA
66 TTTGTCAA
96584416 TTTATGTTTT
Statistics
Matches: 64, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
73 64 1.00
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.30
Consensus pattern (73 bp):
AAATCAACTCATACTGCGAGAGGAGAGTTGAGCCTCAGGACAAGCTGAGGTATTTTCAATTGCTG
TTTGTCAA
Found at i:96584428 original size:13 final size:14
Alignment explanation
Indices: 96584395--96584425 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
96584385 TGCTGAGGTC
*
96584395 TTTTCAATTTCTGT
1 TTTTCAATTTATGT
96584409 TTTTCAATTTATGT
1 TTTTCAATTTATGT
96584423 TTT
1 TTT
96584426 CAAAAATCAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.16, C:0.10, G:0.06, T:0.68
Consensus pattern (14 bp):
TTTTCAATTTATGT
Found at i:96584518 original size:18 final size:18
Alignment explanation
Indices: 96584483--96584518 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
96584473 CGCTGAGGTA
* *
96584483 TTTTCAATTTTTGTTTTT
1 TTTTCAATTTATGCTTTT
96584501 TTTTCAATTTATGCTTTT
1 TTTTCAATTTATGCTTTT
96584519 CAAATTCTTT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.14, C:0.08, G:0.06, T:0.72
Consensus pattern (18 bp):
TTTTCAATTTATGCTTTT
Found at i:96586445 original size:3 final size:3
Alignment explanation
Indices: 96586439--96586463 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
96586429 ATTATTGATG
96586439 TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA T
96586464 GTACTTTTTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:96587069 original size:25 final size:22
Alignment explanation
Indices: 96587038--96587095 Score: 71
Period size: 24 Copynumber: 2.5 Consensus size: 22
96587028 ATTATATGTG
96587038 TATATATTATGTAAAATGTTTTAA
1 TATATATTATGT-AAATGTTTT-A
* *
96587062 TATTATATTATATATATGTTTTA
1 TA-TATATTATGTAAATGTTTTA
96587085 TATATATTATG
1 TATATATTATG
96587096 AACATGTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
22 8 0.27
23 3 0.10
24 10 0.33
25 9 0.30
ACGTcount: A:0.38, C:0.00, G:0.07, T:0.55
Consensus pattern (22 bp):
TATATATTATGTAAATGTTTTA
Found at i:96587102 original size:22 final size:23
Alignment explanation
Indices: 96587038--96587102 Score: 71
Period size: 22 Copynumber: 2.8 Consensus size: 23
96587028 ATTATATGTG
96587038 TATATATTATGTAAAATGTTTTAA
1 TATATATTATG-AAAATGTTTTAA
*
96587062 TATTATATTAT-ATATATGTTTT-A
1 TA-TATATTATGA-AAATGTTTTAA
*
96587085 TATATATTATGAACATGT
1 TATATATTATGAAAATGT
96587103 ATTTTCAATA
Statistics
Matches: 36, Mismatches: 2, Indels: 8
0.78 0.04 0.17
Matches are distributed among these distances:
22 13 0.36
23 5 0.14
24 10 0.28
25 8 0.22
ACGTcount: A:0.38, C:0.02, G:0.08, T:0.52
Consensus pattern (23 bp):
TATATATTATGAAAATGTTTTAA
Found at i:96587118 original size:47 final size:46
Alignment explanation
Indices: 96587038--96587139 Score: 104
Period size: 47 Copynumber: 2.2 Consensus size: 46
96587028 ATTATATGTG
*
96587038 TATATATTATGTAAAATGTTTTAATATTATATTA-TATATATGTTTTA
1 TATATATTATGTAAAATGTTTTAATATTATATTAGT-TAAAT-TTTTA
* *
96587085 TATATATTATG-AACATGTATTTTCAATA-T-TATTAGTTAAATTTTTG
1 TATATATTATGTAAAATG--TTTT-AATATTATATTAGTTAAATTTTTA
96587131 TATATATTA
1 TATATATTA
96587140 CCCTATGTAC
Statistics
Matches: 48, Mismatches: 3, Indels: 9
0.80 0.05 0.15
Matches are distributed among these distances:
46 18 0.38
47 20 0.42
48 6 0.12
49 4 0.08
ACGTcount: A:0.37, C:0.02, G:0.07, T:0.54
Consensus pattern (46 bp):
TATATATTATGTAAAATGTTTTAATATTATATTAGTTAAATTTTTA
Found at i:96588867 original size:30 final size:30
Alignment explanation
Indices: 96588831--96588892 Score: 106
Period size: 30 Copynumber: 2.1 Consensus size: 30
96588821 TAAGGTGTTG
*
96588831 TTTTTTCATCTAATCTAATAGAGTTATCGT
1 TTTTTTCAGCTAATCTAATAGAGTTATCGT
*
96588861 TTTTTTCAGCTAATTTAATAGAGTTATCGT
1 TTTTTTCAGCTAATCTAATAGAGTTATCGT
96588891 TT
1 TT
96588893 AGGGAGTTTG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.26, C:0.11, G:0.11, T:0.52
Consensus pattern (30 bp):
TTTTTTCAGCTAATCTAATAGAGTTATCGT
Found at i:96594864 original size:560 final size:555
Alignment explanation
Indices: 96593810--96594925 Score: 2034
Period size: 560 Copynumber: 2.0 Consensus size: 555
96593800 TTTAAAAATC
*
96593810 ATAACTGTACCATCGGCGAAACATGTGGTTTTCAAAATTCAAACTGCGTTTTCCAAACTGAACCT
1 ATAACTGTACCATCGGCGAAACATGTGGTTTTCAAAATTCAAACTACGTTTTCCAAACTGAACCT
*
96593875 AACTAAGAGTTCCGCTGCAAAAATAAGCATTTTATTAATATAATTTAATCAACAGAATTAATAAG
66 AACTAAGAGTTCCACTGCAAAAATAAGCATTTTATTAATATAATTTAATCAACAGAATTAATAAG
* *
96593940 TAAGGAAGTTATTTTCATTTAAAAATCAAAATTTTTCTATCAAAGCTTTCGTTATTTCTACAATC
131 TAAAGAAGTTATTTTCATTTAAAAATCAAAATTGTTCTATCAAAGCTTTCGTTATTTCTACAATC
*
96594005 CTAACTAATTTATGGATTTTCAAAGGGAATCATGGTAACTTCTCGAGATCTAGCCATAATGTTTA
196 CTAACTAATTTATGGATTTTCAAAGGGAATCATGGTAACTTCTCGAGATCGAGCCATAATGTTTA
96594070 GGTCGGGTTTGGGGTGTTACAATCCTTGCAAATTTTTGCTTGTCGAGCCTCAATGTTGCAACATC
261 GGTCGGGTTTGGGGTGTTACAATCCTTGCAAATTTTTGCTTGTCGAGCCTCAATGTTGCAACATC
*
96594135 TAGGCATTAGTGTAACGACCTTGCCAACAACATTCACCTAGATCAATTTGGTTGCATCAGTGTCA
326 TAGGCATTAGTGTAACGACCTTGCCAACAACATTCACCCAGATCAATTTGGTTGCATCAGTGTCA
*
96594200 CGACTCTGGTCCCTAATGCCATGACTTTGGCTTCTTAGATAGCTAGGATCCCTTGACATTGGTGA
391 CGACTCTGGTCCCTAATGCCATGACTTTGGCTTCTTAGATAGCTAGGATCCCTCGACATTGGTGA
* *
96594265 CTGCCTTTGATGTCACGACTTCAGTAACACAATGTCGCGACTCCATGCTCTTAGTGTCACGATTC
456 CTGCCTTTGATGTCACGACTTCAGCAACACAATGTCGCGACTCCATGCTCTTAGTGTCACGACTC
96594330 CATCACCAGTTCACTTGCAGTGTGATAGTTCTTGA
521 CATCACCAGTTCACTTGCAGTGTGATAGTTCTTGA
96594365 ATAACTGTACCATCGGCGAAACATGTGGTTTTCAAAATTCAAACTACGTTTTCCAAACTGAACCT
1 ATAACTGTACCATCGGCGAAACATGTGGTTTTCAAAATTCAAACTACGTTTTCCAAACTGAACCT
*
96594430 AACTAAGAGTTCCACTGCAAAAATAAGCATTTTATTAGTATAATTTAATCAACAGAATTAACAAA
66 AACTAAGAGTTCCACTGCAAAAATAAGCATTTTATTAATATAATTTAATCAACAGAATT----AA
96594495 TTAAGTAAAGAAGTTATTTTCATTTAAAAATCAAAATTGTTCTATCAAAGCTTTCGTTATTTCTA
127 -TAAGTAAAGAAGTTATTTTCATTTAAAAATCAAAATTGTTCTATCAAAGCTTTCGTTATTTCTA
*
96594560 CAATCCTAACTAATTTATGGATTTTCAAAGGGAATCATGGTAACTTTTCGAGATCGAGCCATAAT
191 CAATCCTAACTAATTTATGGATTTTCAAAGGGAATCATGGTAACTTCTCGAGATCGAGCCATAAT
* *
96594625 GTTTAGGTCGGGTTTGGGTTGTTACAATCCTTGCAAATTTTTTCTTGTCGAGCCTCAATGTTGCA
256 GTTTAGGTCGGGTTTGGGGTGTTACAATCCTTGCAAATTTTTGCTTGTCGAGCCTCAATGTTGCA
96594690 ACATCTAGGCATTAGTGTAACGACCTTGCCAACAACATTCACCCAGATCAATTTGGTTGCATCAG
321 ACATCTAGGCATTAGTGTAACGACCTTGCCAACAACATTCACCCAGATCAATTTGGTTGCATCAG
* *
96594755 TGTCACGACTCTGGTCCCTAATGTCGTGACTTTGGCTTCTTAGATAGCTAGGATCCCTCGACATT
386 TGTCACGACTCTGGTCCCTAATGCCATGACTTTGGCTTCTTAGATAGCTAGGATCCCTCGACATT
*
96594820 GGTGACTGCCTTTGATGTCACGACTTTAGCAACACAATGTCGCGACTCCATGCTCTTAGTGTCAC
451 GGTGACTGCCTTTGATGTCACGACTTCAGCAACACAATGTCGCGACTCCATGCTCTTAGTGTCAC
*
96594885 GACTCCATCACCAGTTCACTTGTAGTGTGATAGTTCTTGA
516 GACTCCATCACCAGTTCACTTGCAGTGTGATAGTTCTTGA
96594925 A
1 A
96594926 ATTCAAACTC
Statistics
Matches: 539, Mismatches: 17, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
555 121 0.22
559 2 0.00
560 416 0.77
ACGTcount: A:0.29, C:0.20, G:0.17, T:0.33
Consensus pattern (555 bp):
ATAACTGTACCATCGGCGAAACATGTGGTTTTCAAAATTCAAACTACGTTTTCCAAACTGAACCT
AACTAAGAGTTCCACTGCAAAAATAAGCATTTTATTAATATAATTTAATCAACAGAATTAATAAG
TAAAGAAGTTATTTTCATTTAAAAATCAAAATTGTTCTATCAAAGCTTTCGTTATTTCTACAATC
CTAACTAATTTATGGATTTTCAAAGGGAATCATGGTAACTTCTCGAGATCGAGCCATAATGTTTA
GGTCGGGTTTGGGGTGTTACAATCCTTGCAAATTTTTGCTTGTCGAGCCTCAATGTTGCAACATC
TAGGCATTAGTGTAACGACCTTGCCAACAACATTCACCCAGATCAATTTGGTTGCATCAGTGTCA
CGACTCTGGTCCCTAATGCCATGACTTTGGCTTCTTAGATAGCTAGGATCCCTCGACATTGGTGA
CTGCCTTTGATGTCACGACTTCAGCAACACAATGTCGCGACTCCATGCTCTTAGTGTCACGACTC
CATCACCAGTTCACTTGCAGTGTGATAGTTCTTGA
Found at i:96599951 original size:19 final size:18
Alignment explanation
Indices: 96599924--96599963 Score: 55
Period size: 19 Copynumber: 2.2 Consensus size: 18
96599914 AAAAAAGATA
96599924 AAATTATAA-TAATATATT
1 AAATTATAATTAATA-ATT
96599942 AAATTAATAATTAATAATT
1 AAATT-ATAATTAATAATT
96599961 AAA
1 AAA
96599964 AAATTCATAA
Statistics
Matches: 20, Mismatches: 0, Indels: 3
0.87 0.00 0.13
Matches are distributed among these distances:
18 5 0.25
19 10 0.50
20 5 0.25
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
AAATTATAATTAATAATT
Found at i:96600283 original size:8 final size:9
Alignment explanation
Indices: 96600252--96600282 Score: 62
Period size: 9 Copynumber: 3.4 Consensus size: 9
96600242 GTGGTTGACG
96600252 AAAAATTTT
1 AAAAATTTT
96600261 AAAAATTTT
1 AAAAATTTT
96600270 AAAAATTTT
1 AAAAATTTT
96600279 AAAA
1 AAAA
96600283 TGTTAATATT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 22 1.00
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (9 bp):
AAAAATTTT
Found at i:96602136 original size:17 final size:19
Alignment explanation
Indices: 96602095--96602154 Score: 72
Period size: 17 Copynumber: 3.2 Consensus size: 19
96602085 TTAAGGTTTT
*
96602095 TTTTTTACATTTTTTATATA
1 TTTTTTA-ATTTTTCATATA
96602115 TTTTTTAATTTTTCATA-A
1 TTTTTTAATTTTTCATATA
96602133 -TTTTTAATTTTT-ATATA
1 TTTTTTAATTTTTCATATA
96602150 CTTTT
1 -TTTT
96602155 GAGTTCTTTT
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
16 3 0.08
17 13 0.36
18 1 0.03
19 12 0.33
20 7 0.19
ACGTcount: A:0.25, C:0.05, G:0.00, T:0.70
Consensus pattern (19 bp):
TTTTTTAATTTTTCATATA
Found at i:96604880 original size:45 final size:45
Alignment explanation
Indices: 96604788--96604880 Score: 116
Period size: 45 Copynumber: 2.1 Consensus size: 45
96604778 TATTTTGCTG
* * * **
96604788 TGTACCCACAGCCATAGGCAAATTCCATCTACAGTGTTTTTGTTA
1 TGTACCCACAACCATAAGCAAATTCCATCCACAGTGTTTTTACTA
*
96604833 TGTACCCACAACCATAAGCAAATTCCATCCGC-GATGTTTTTACTA
1 TGTACCCACAACCATAAGCAAATTCCATCCACAG-TGTTTTTACTA
96604878 TGT
1 TGT
96604881 GTCCATAACC
Statistics
Matches: 41, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
44 1 0.02
45 40 0.98
ACGTcount: A:0.28, C:0.26, G:0.14, T:0.32
Consensus pattern (45 bp):
TGTACCCACAACCATAAGCAAATTCCATCCACAGTGTTTTTACTA
Found at i:96607239 original size:45 final size:45
Alignment explanation
Indices: 96607175--96607264 Score: 162
Period size: 45 Copynumber: 2.0 Consensus size: 45
96607165 TTTTTAAAGA
96607175 ATAATTTATTTTAATTTTTTAATAAAATAAAACCAACTGAATTTT
1 ATAATTTATTTTAATTTTTTAATAAAATAAAACCAACTGAATTTT
* *
96607220 ATAATTTATTTTAATTTTTTAATAAAATAAAATCAACTGAGTTTT
1 ATAATTTATTTTAATTTTTTAATAAAATAAAACCAACTGAATTTT
96607265 TTTACATTAA
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.43, C:0.06, G:0.03, T:0.48
Consensus pattern (45 bp):
ATAATTTATTTTAATTTTTTAATAAAATAAAACCAACTGAATTTT
Found at i:96607895 original size:28 final size:28
Alignment explanation
Indices: 96607796--96607895 Score: 78
Period size: 28 Copynumber: 3.4 Consensus size: 28
96607786 TTAAAATTTG
* *
96607796 AATTTTTTTAATTTGGTTATTAAATTTAA
1 AATTTTTTTAATTTGTTTA-TAATTTTAA
*
96607825 ATTTTGTTAATTATTATTT-TTT-TAATTTTAA
1 AATTT-TT--TTA--ATTTGTTTATAATTTTAA
* * *
96607856 AAATGTTATAATTTGTTTATAATTTTAA
1 AATTTTTTTAATTTGTTTATAATTTTAA
96607884 AATTTTTTTAAT
1 AATTTTTTTAAT
96607896 ATTTTCTTAA
Statistics
Matches: 54, Mismatches: 10, Indels: 15
0.68 0.13 0.19
Matches are distributed among these distances:
26 4 0.07
27 3 0.06
28 20 0.37
29 4 0.07
30 4 0.07
31 10 0.19
32 3 0.06
33 2 0.04
34 4 0.07
ACGTcount: A:0.34, C:0.00, G:0.05, T:0.61
Consensus pattern (28 bp):
AATTTTTTTAATTTGTTTATAATTTTAA
Found at i:96644194 original size:40 final size:40
Alignment explanation
Indices: 96644150--96644297 Score: 280
Period size: 40 Copynumber: 3.7 Consensus size: 40
96644140 GCTACTTGCT
96644150 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
96644190 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
*
96644230 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
96644270 CAAATGCCTTCGGG-CTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCCGGTTAT
96644298 CAATCCGAAT
Statistics
Matches: 106, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
39 13 0.12
40 93 0.88
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCA
Found at i:96651704 original size:39 final size:40
Alignment explanation
Indices: 96651659--96651769 Score: 98
Period size: 40 Copynumber: 2.8 Consensus size: 40
96651649 CGGGGTTTAG
* * *
96651659 CCGGATATAACCACTCGCA-CAAGGCCTTCGGGTCTTAAC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
*** * *
96651698 CCGGATATGGTCACTAGCATAAATGCCTTCGGGACTTAGC
1 CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
** * * *
96651738 CCGGATATAGTCGCTAGCACAAATGCCTTCGG
1 CCGGATATAACCACTAGCATAAAGGCCTTCGG
96651770 ATCTTAGTCT
Statistics
Matches: 60, Mismatches: 11, Indels: 1
0.83 0.15 0.01
Matches are distributed among these distances:
39 15 0.25
40 45 0.75
ACGTcount: A:0.25, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCGGATATAACCACTAGCATAAAGGCCTTCGGGACTTAAC
Found at i:96651729 original size:40 final size:40
Alignment explanation
Indices: 96651682--96651826 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
96651672 CTCGCACAAG
* * * * *
96651682 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
96651722 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
96651762 GCCTTC-GGATCTTAGTCTGGATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
96651803 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
96651827 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.23, C:0.26, G:0.25, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:96662347 original size:27 final size:28
Alignment explanation
Indices: 96662316--96662378 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 28
96662306 TGTCTTGACC
96662316 GTGTGTG-ACACACGGTCAGCTCCATGG
1 GTGTGTGTACACACGGTCAGCTCCATGG
*
96662343 GTGTGTGGTATACACGGTCAGCTCCATGG
1 GTGTGT-GTACACACGGTCAGCTCCATGG
96662372 GTGTGTG
1 GTGTGTG
96662379 GTATGGCCGT
Statistics
Matches: 33, Mismatches: 1, Indels: 3
0.89 0.03 0.08
Matches are distributed among these distances:
27 6 0.18
28 2 0.06
29 25 0.76
ACGTcount: A:0.16, C:0.21, G:0.37, T:0.27
Consensus pattern (28 bp):
GTGTGTGTACACACGGTCAGCTCCATGG
Found at i:96662357 original size:29 final size:29
Alignment explanation
Indices: 96662325--96662382 Score: 116
Period size: 29 Copynumber: 2.0 Consensus size: 29
96662315 CGTGTGTGAC
96662325 ACACGGTCAGCTCCATGGGTGTGTGGTAT
1 ACACGGTCAGCTCCATGGGTGTGTGGTAT
96662354 ACACGGTCAGCTCCATGGGTGTGTGGTAT
1 ACACGGTCAGCTCCATGGGTGTGTGGTAT
96662383 GGCCGTGTGT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
29 29 1.00
ACGTcount: A:0.17, C:0.21, G:0.34, T:0.28
Consensus pattern (29 bp):
ACACGGTCAGCTCCATGGGTGTGTGGTAT
Found at i:96666773 original size:10 final size:11
Alignment explanation
Indices: 96666758--96666802 Score: 51
Period size: 11 Copynumber: 4.4 Consensus size: 11
96666748 ATTTTGATAT
*
96666758 ACATGATTTG-
1 ACATGATATGC
96666768 ACATGATATGC
1 ACATGATATGC
96666779 ACATGATATG-
1 ACATGATATGC
*
96666789 -TATGATATGC
1 ACATGATATGC
96666799 ACAT
1 ACAT
96666803 CATGTATTCA
Statistics
Matches: 29, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
9 8 0.28
10 9 0.31
11 12 0.41
ACGTcount: A:0.36, C:0.13, G:0.18, T:0.33
Consensus pattern (11 bp):
ACATGATATGC
Found at i:96666784 original size:11 final size:10
Alignment explanation
Indices: 96666752--96666802 Score: 52
Period size: 9 Copynumber: 5.1 Consensus size: 10
96666742 CATGAGATTT
96666752 TGATAT-ACA
1 TGATATGACA
*
96666761 TGATTTGACA
1 TGATATGACA
96666771 TGATATGCACA
1 TGATATG-ACA
*
96666782 TGATATG-TA
1 TGATATGACA
96666791 TGATATGCACA
1 TGATATG-ACA
96666802 T
1 T
96666803 CATGTATTCA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 13 0.38
10 9 0.26
11 12 0.35
ACGTcount: A:0.35, C:0.12, G:0.18, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:96666904 original size:25 final size:26
Alignment explanation
Indices: 96666852--96666947 Score: 117
Period size: 26 Copynumber: 3.8 Consensus size: 26
96666842 GAGGAAGTGC
* *
96666852 AAAAGGGC-TATGCCCCAG-TTACAG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
96666876 AAAAGGGC-TTTGCCCCAGTTTACCG
1 AAAAGGGCTTTTGCCCCAGTTTACCG
* * *
96666901 AAAAGGGCTTTTGCCCCAATTTATCA
1 AAAAGGGCTTTTGCCCCAGTTTACCG
*
96666927 AAAAGGGCTTTTGCCCTAGTT
1 AAAAGGGCTTTTGCCCCAGTT
96666948 ATTAAAAGAG
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
24 17 0.27
25 13 0.21
26 33 0.52
ACGTcount: A:0.28, C:0.24, G:0.22, T:0.26
Consensus pattern (26 bp):
AAAAGGGCTTTTGCCCCAGTTTACCG
Found at i:96666960 original size:25 final size:26
Alignment explanation
Indices: 96666876--96666960 Score: 65
Period size: 25 Copynumber: 3.4 Consensus size: 26
96666866 CCAGTTACAG
*
96666876 AAAAG-GGC-TTTGCCCC-AGTTTACC
1 AAAAGAGGCTTTTGCCCCAAG-TTATC
*
96666900 GAAAAG-GGCTTTTGCCCCAATTTATC
1 -AAAAGAGGCTTTTGCCCCAAGTTATC
* *
96666926 AAAA-AGGGCTTTTG-CCCTAGTTATT
1 AAAAGA-GGCTTTTGCCCCAAGTTATC
96666951 AAAAGAGGCT
1 AAAAGAGGCT
96666961 AGGCCTCCAG
Statistics
Matches: 50, Mismatches: 5, Indels: 10
0.77 0.08 0.15
Matches are distributed among these distances:
25 28 0.56
26 21 0.42
27 1 0.02
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.28
Consensus pattern (26 bp):
AAAAGAGGCTTTTGCCCCAAGTTATC
Found at i:96667205 original size:31 final size:31
Alignment explanation
Indices: 96667167--96667250 Score: 125
Period size: 31 Copynumber: 2.7 Consensus size: 31
96667157 TTGTTACAGT
96667167 AAAGGCTTCAGCCCAGTGATATGAATAATGA
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
* *
96667198 AAAGGCTTCAGCCCAATGATATGAATAATGT
1 AAAGGCTTCAGCCCAGTGATATGAATAATGA
**
96667229 AAAGGCTTTGGCCCAGT-ATATG
1 AAAGGCTTCAGCCCAGTGATATG
96667251 CTGAGATTGA
Statistics
Matches: 48, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
30 5 0.10
31 43 0.90
ACGTcount: A:0.36, C:0.17, G:0.23, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCAGCCCAGTGATATGAATAATGA
Found at i:96669107 original size:20 final size:21
Alignment explanation
Indices: 96669082--96669122 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
96669072 CTAAACTGAT
96669082 AACTTATG-AAATTTTA-AAAA
1 AACTTA-GAAAATTTTACAAAA
96669102 AACTTAGAAAATTTTACAAAA
1 AACTTAGAAAATTTTACAAAA
96669123 TACAGGGGAC
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
19 1 0.05
20 14 0.74
21 4 0.21
ACGTcount: A:0.56, C:0.07, G:0.05, T:0.32
Consensus pattern (21 bp):
AACTTAGAAAATTTTACAAAA
Found at i:96671785 original size:14 final size:14
Alignment explanation
Indices: 96671766--96671799 Score: 68
Period size: 14 Copynumber: 2.4 Consensus size: 14
96671756 ATTGTAGTTT
96671766 GAAATATATGATTC
1 GAAATATATGATTC
96671780 GAAATATATGATTC
1 GAAATATATGATTC
96671794 GAAATA
1 GAAATA
96671800 AAGACCCACT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.47, C:0.06, G:0.15, T:0.32
Consensus pattern (14 bp):
GAAATATATGATTC
Found at i:96674417 original size:41 final size:40
Alignment explanation
Indices: 96674360--96674540 Score: 166
Period size: 41 Copynumber: 4.4 Consensus size: 40
96674350 ACCGTTGCTC
** **
96674360 ACATAAAATTTGCTAGGCATAAAGCCTGGTATAATACACCG
1 ACATAAAACCTGCTAGGCA-AAAGCCTGAAATAATACACCG
* * * *
96674401 ACATAGAGCCTGCTAGGCAATAGCTCTGAAATAATACACTG
1 ACATAAAACCTGCTAGGCAAAAGC-CTGAAATAATACACCG
*
96674442 GCATAAAACCTGCTAGGCAATAAGCCTGAAATAATACACC-
1 ACATAAAACCTGCTAGGCAA-AAGCCTGAAATAATACACCG
* * * * * *
96674482 AGCATAAAGCTTGCTATGCAATAAGCCTGATATAATTCATCG
1 A-CATAAAACCTGCTAGGCAA-AAGCCTGAAATAATACACCG
*
96674524 GCATAAAACCTGCTAGG
1 ACATAAAACCTGCTAGG
96674541 TATAAAGGCA
Statistics
Matches: 112, Mismatches: 24, Indels: 8
0.78 0.17 0.06
Matches are distributed among these distances:
40 4 0.04
41 105 0.94
42 3 0.03
ACGTcount: A:0.38, C:0.22, G:0.18, T:0.23
Consensus pattern (40 bp):
ACATAAAACCTGCTAGGCAAAAGCCTGAAATAATACACCG
Found at i:96674503 original size:82 final size:82
Alignment explanation
Indices: 96674361--96674547 Score: 220
Period size: 82 Copynumber: 2.3 Consensus size: 82
96674351 CCGTTGCTCA
** ** *
96674361 CATAAAATTTGCTAGGCATAAAGCCTGGTATAATACACCGACATAGAGCCTGCTAGGCAAT-AGC
1 CATAAAACCTGCTAGGCATAAAGCCTGAAATAATACACCGACATAAAGCCTGCTAGGCAATAAGC
96674425 TCTGAAATAATACA-CTGG
66 -CTGAAATAATACATC-GG
* *
96674443 CATAAAACCTGCTAGGCA-ATAAGCCTGAAATAATACACC-AGCATAAAGCTTGCTATGCAATAA
1 CATAAAACCTGCTAGGCATA-AAGCCTGAAATAATACACCGA-CATAAAGCCTGCTAGGCAATAA
* *
96674506 GCCTGATATAATTCATCGG
64 GCCTGAAATAATACATCGG
*
96674525 CATAAAACCTGCTAGGTATAAAG
1 CATAAAACCTGCTAGGCATAAAG
96674548 GCAGAATATC
Statistics
Matches: 90, Mismatches: 10, Indels: 10
0.82 0.09 0.09
Matches are distributed among these distances:
81 2 0.02
82 83 0.92
83 5 0.06
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.23
Consensus pattern (82 bp):
CATAAAACCTGCTAGGCATAAAGCCTGAAATAATACACCGACATAAAGCCTGCTAGGCAATAAGC
CTGAAATAATACATCGG
Found at i:96676220 original size:27 final size:27
Alignment explanation
Indices: 96676182--96676235 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
96676172 TCTATTCAAG
96676182 ATTACTTATTATATTAGGGATCGATGC
1 ATTACTTATTATATTAGGGATCGATGC
96676209 ATTACTTATTATATTAGGGATCGATGC
1 ATTACTTATTATATTAGGGATCGATGC
96676236 CCCTGATCGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.30, C:0.11, G:0.19, T:0.41
Consensus pattern (27 bp):
ATTACTTATTATATTAGGGATCGATGC
Found at i:96691045 original size:437 final size:437
Alignment explanation
Indices: 96690231--96691104 Score: 1748
Period size: 437 Copynumber: 2.0 Consensus size: 437
96690221 ACAAAACACA
96690231 AAATACACAAAATTTCAGCATACCCATGATGAGCCGAATTTTACCCACTCTCAAACAAAGCCATA
1 AAATACACAAAATTTCAGCATACCCATGATGAGCCGAATTTTACCCACTCTCAAACAAAGCCATA
96690296 TATTTCATTTATTTCACATTTTAGTCCCTCAAATTATTATTTTTGCAATTTAGTCCTAATTACTC
66 TATTTCATTTATTTCACATTTTAGTCCCTCAAATTATTATTTTTGCAATTTAGTCCTAATTACTC
96690361 AAAATCATCAAAAAACTCCAATACAAAACATGTTAATCTAAAATATATCTTTCATATTTCATCAT
131 AAAATCATCAAAAAACTCCAATACAAAACATGTTAATCTAAAATATATCTTTCATATTTCATCAT
96690426 CAAACAACAAAAATCACAAGCTCTCAATAATGGCATAACTCAAAATATTCATCAAAATTAAAAAT
196 CAAACAACAAAAATCACAAGCTCTCAATAATGGCATAACTCAAAATATTCATCAAAATTAAAAAT
96690491 TCGAGCATGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAAAATCGA
261 TCGAGCATGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAAAATCGA
96690556 GCTAAACTCAATCAAGCTTGTTTATGGCCGAACTACGTTTTCTTTCCTTTTTTTCTTTCTTTTTT
326 GCTAAACTCAATCAAGCTTGTTTATGGCCGAACTACGTTTTCTTTCCTTTTTTTCTTTCTTTTTT
96690621 GGTTTCGGACAAAAGAATATAAAATGAATCATGGTTTTCTTTATTTG
391 GGTTTCGGACAAAAGAATATAAAATGAATCATGGTTTTCTTTATTTG
96690668 AAATACACAAAATTTCAGCATACCCATGATGAGCCGAATTTTACCCACTCTCAAACAAAGCCATA
1 AAATACACAAAATTTCAGCATACCCATGATGAGCCGAATTTTACCCACTCTCAAACAAAGCCATA
96690733 TATTTCATTTATTTCACATTTTAGTCCCTCAAATTATTATTTTTGCAATTTAGTCCTAATTACTC
66 TATTTCATTTATTTCACATTTTAGTCCCTCAAATTATTATTTTTGCAATTTAGTCCTAATTACTC
96690798 AAAATCATCAAAAAACTCCAATACAAAACATGTTAATCTAAAATATATCTTTCATATTTCATCAT
131 AAAATCATCAAAAAACTCCAATACAAAACATGTTAATCTAAAATATATCTTTCATATTTCATCAT
96690863 CAAACAACAAAAATCACAAGCTCTCAATAATGGCATAACTCAAAATATTCATCAAAATTAAAAAT
196 CAAACAACAAAAATCACAAGCTCTCAATAATGGCATAACTCAAAATATTCATCAAAATTAAAAAT
96690928 TCGAGCATGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAAAATCGA
261 TCGAGCATGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAAAATCGA
96690993 GCTAAACTCAATCAAGCTTGTTTATGGCCGAACTACGTTTTCTTTCCTTTTTTTCTTTCTTTTTT
326 GCTAAACTCAATCAAGCTTGTTTATGGCCGAACTACGTTTTCTTTCCTTTTTTTCTTTCTTTTTT
96691058 GGTTTCGGACAAAAGAATATAAAATGAATCATGGTTTTCTTTATTTG
391 GGTTTCGGACAAAAGAATATAAAATGAATCATGGTTTTCTTTATTTG
96691105 TGATATATGT
Statistics
Matches: 437, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
437 437 1.00
ACGTcount: A:0.37, C:0.19, G:0.09, T:0.34
Consensus pattern (437 bp):
AAATACACAAAATTTCAGCATACCCATGATGAGCCGAATTTTACCCACTCTCAAACAAAGCCATA
TATTTCATTTATTTCACATTTTAGTCCCTCAAATTATTATTTTTGCAATTTAGTCCTAATTACTC
AAAATCATCAAAAAACTCCAATACAAAACATGTTAATCTAAAATATATCTTTCATATTTCATCAT
CAAACAACAAAAATCACAAGCTCTCAATAATGGCATAACTCAAAATATTCATCAAAATTAAAAAT
TCGAGCATGGGTTTTGTAGTACTCGAAGCAACGATCTCAAAAACGTAAAAATTATCAAAAATCGA
GCTAAACTCAATCAAGCTTGTTTATGGCCGAACTACGTTTTCTTTCCTTTTTTTCTTTCTTTTTT
GGTTTCGGACAAAAGAATATAAAATGAATCATGGTTTTCTTTATTTG
Found at i:96702748 original size:20 final size:20
Alignment explanation
Indices: 96702720--96702763 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
96702710 ACCAAACTTG
*
96702720 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
96702740 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
96702760 CAAC
1 CAAC
96702764 TTAAACTTTG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:96702968 original size:42 final size:42
Alignment explanation
Indices: 96702849--96702970 Score: 147
Period size: 42 Copynumber: 2.9 Consensus size: 42
96702839 TACCATACCA
* * * * **
96702849 ATGCCATATCCTAGATATTGTTTTACATGGGATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
*
96702891 ATGCCAATAGCCCA-ACTATGGTCTTACACGAAATCTCATATCG
1 ATGCC-ATATCCCAGA-TATGGTCTTACACGAAATCTCATATCG
*
96702934 ATGCCATATCCCAGATATGGTCTTACACGTAATCTCA
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCA
96702971 ACTAACCCTA
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
42 34 0.50
43 34 0.50
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.31
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:96708559 original size:28 final size:28
Alignment explanation
Indices: 96708504--96708591 Score: 99
Period size: 28 Copynumber: 3.2 Consensus size: 28
96708494 AGCATGGCTG
* * *
96708504 CCAG-AACAGAT-ATTGTGACAGAGTCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
* *
96708530 CCAGATACAGATAATTGGGGCAGGGCCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
* *
96708558 CCAGAAACAGATATTTGTGGCAGAGCCA
1 CCAGAAACAGATAATTGGGGCAGAGCCA
96708586 CCAGAA
1 CCAGAA
96708592 CGCTTCCTCC
Statistics
Matches: 51, Mismatches: 9, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
26 4 0.08
27 6 0.12
28 41 0.80
ACGTcount: A:0.36, C:0.22, G:0.26, T:0.16
Consensus pattern (28 bp):
CCAGAAACAGATAATTGGGGCAGAGCCA
Found at i:96708754 original size:26 final size:25
Alignment explanation
Indices: 96708698--96708756 Score: 73
Period size: 26 Copynumber: 2.3 Consensus size: 25
96708688 ATCAACCTTA
*
96708698 AGGGTATAATGGTCATTTTACACCT
1 AGGGTATAATGGTAATTTTACACCT
* *
96708723 AGGGGTATAATGGTAATTTTCATACTT
1 A-GGGTATAATGGTAATTTT-ACACCT
96708750 AGGGTAT
1 AGGGTAT
96708757 TTTAGTAAAT
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
25 1 0.03
26 23 0.79
27 5 0.17
ACGTcount: A:0.29, C:0.10, G:0.24, T:0.37
Consensus pattern (25 bp):
AGGGTATAATGGTAATTTTACACCT
Found at i:96709869 original size:18 final size:19
Alignment explanation
Indices: 96709824--96709878 Score: 58
Period size: 18 Copynumber: 2.8 Consensus size: 19
96709814 CTATAGAGGG
96709824 AAAGAAGAAGAAGAGAAAAT
1 AAAGAAG-AGAAGAGAAAAT
* *
96709844 AGATGAAGAGAGGAGAAAA-
1 A-AAGAAGAGAAGAGAAAAT
*
96709863 AAAGAAGAGAAAAGAA
1 AAAGAAGAGAAGAGAA
96709879 TTGTCAAAAA
Statistics
Matches: 29, Mismatches: 5, Indels: 4
0.76 0.13 0.11
Matches are distributed among these distances:
18 12 0.41
19 1 0.03
20 11 0.38
21 5 0.17
ACGTcount: A:0.67, C:0.00, G:0.29, T:0.04
Consensus pattern (19 bp):
AAAGAAGAGAAGAGAAAAT
Found at i:96710882 original size:16 final size:16
Alignment explanation
Indices: 96710861--96710893 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
96710851 AAATCTATGC
*
96710861 AATAATAATAATAATA
1 AATAATAATAACAATA
96710877 AATAATAATAACAATA
1 AATAATAATAACAATA
96710893 A
1 A
96710894 CATCCAAATT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (16 bp):
AATAATAATAACAATA
Found at i:96718891 original size:56 final size:56
Alignment explanation
Indices: 96718831--96718965 Score: 216
Period size: 56 Copynumber: 2.4 Consensus size: 56
96718821 TCCTAGATAG
* **
96718831 GGTCTTACTCGCACACATATATCAGAATCACATATCAATGCCAATGTATTAAACGT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACGT
* *
96718887 GGTCTTACTCGCACACATATATCAAAATCACATATCGATGCTAACATATTAAACGT
1 GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACGT
*
96718943 GGTCTTACTCGTACACATATATC
1 GGTCTTACTCGCACACATATATC
96718966 GATGCCATGG
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
56 73 1.00
ACGTcount: A:0.35, C:0.24, G:0.12, T:0.30
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCAAAATCACATATCAATGCCAACATATTAAACGT
Found at i:96724755 original size:30 final size:30
Alignment explanation
Indices: 96724703--96724765 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
96724693 TATGATATGG
* *
96724703 TATCTTGGATTTCTTTACCTTGGATATTTT
1 TATCTTGGATTCCTCTACCTTGGATATTTT
** *
96724733 TATCTTGGATTCCTCTGTCTTGGATTTTTT
1 TATCTTGGATTCCTCTACCTTGGATATTTT
96724763 TAT
1 TAT
96724766 TCTGGTTTTC
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.14, C:0.14, G:0.14, T:0.57
Consensus pattern (30 bp):
TATCTTGGATTCCTCTACCTTGGATATTTT
Found at i:96731403 original size:63 final size:63
Alignment explanation
Indices: 96731304--96731443 Score: 280
Period size: 63 Copynumber: 2.2 Consensus size: 63
96731294 AGAAAGGATC
96731304 TAGCCCGGACGGGTGTTCCTTGAGTGATCGAGCCTCCCAAAGAATATGTGTGCAATATGGACT
1 TAGCCCGGACGGGTGTTCCTTGAGTGATCGAGCCTCCCAAAGAATATGTGTGCAATATGGACT
96731367 TAGCCCGGACGGGTGTTCCTTGAGTGATCGAGCCTCCCAAAGAATATGTGTGCAATATGGACT
1 TAGCCCGGACGGGTGTTCCTTGAGTGATCGAGCCTCCCAAAGAATATGTGTGCAATATGGACT
96731430 TAGCCCGGACGGGT
1 TAGCCCGGACGGGT
96731444 AATCTAATTA
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
63 77 1.00
ACGTcount: A:0.23, C:0.23, G:0.30, T:0.24
Consensus pattern (63 bp):
TAGCCCGGACGGGTGTTCCTTGAGTGATCGAGCCTCCCAAAGAATATGTGTGCAATATGGACT
Found at i:96740754 original size:28 final size:28
Alignment explanation
Indices: 96740714--96740769 Score: 94
Period size: 28 Copynumber: 2.0 Consensus size: 28
96740704 TACATGGGAG
* *
96740714 TCAGAATAAACCATGAGAAACTAATATC
1 TCAGAAGAAACCATGAGAAACCAATATC
96740742 TCAGAAGAAACCATGAGAAACCAATATC
1 TCAGAAGAAACCATGAGAAACCAATATC
96740770 CAAACATGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.50, C:0.20, G:0.12, T:0.18
Consensus pattern (28 bp):
TCAGAAGAAACCATGAGAAACCAATATC
Found at i:96740991 original size:23 final size:23
Alignment explanation
Indices: 96740965--96741011 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
96740955 AAATTTTATG
96740965 AGTAAGGTGTCCAATTGGAAAAT
1 AGTAAGGTGTCCAATTGGAAAAT
96740988 AGTAAGGTGTCCAATTGGAAAAT
1 AGTAAGGTGTCCAATTGGAAAAT
96741011 A
1 A
96741012 AGGACCAAAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.26, T:0.26
Consensus pattern (23 bp):
AGTAAGGTGTCCAATTGGAAAAT
Found at i:96748069 original size:27 final size:27
Alignment explanation
Indices: 96748031--96748139 Score: 132
Period size: 27 Copynumber: 4.0 Consensus size: 27
96748021 AAGCATCCTT
*
96748031 GTGGCTATGCCACAATTATCTGATCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
*
96748058 GTGGCTCTGCCACATATT-TCTGTTCTG
1 GTGGCTCTGCCACA-ATTATCTGATCTG
*
96748085 GTGGCTCTGCCACGATTATCTGTATCTG
1 GTGGCTCTGCCACAATTATCTG-ATCTG
* * *
96748113 GTGACTCTGTCAC-ATTATCTGTTCTG
1 GTGGCTCTGCCACAATTATCTGATCTG
96748139 G
1 G
96748140 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.64
28 18 0.25
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.38
Consensus pattern (27 bp):
GTGGCTCTGCCACAATTATCTGATCTG
Found at i:96748134 original size:54 final size:54
Alignment explanation
Indices: 96748031--96748139 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
96748021 AAGCATCCTT
* *
96748031 GTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTCTG
1 GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTG
* * *
96748085 GTGGCTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTCTG
1 GTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTCTG
96748139 G
1 G
96748140 CAGCCATGCT
Statistics
Matches: 49, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
54 31 0.63
55 18 0.37
ACGTcount: A:0.16, C:0.24, G:0.23, T:0.38
Consensus pattern (54 bp):
GTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTCTG
Found at i:96756431 original size:38 final size:38
Alignment explanation
Indices: 96756407--96756483 Score: 118
Period size: 38 Copynumber: 2.0 Consensus size: 38
96756397 CAAATTGAAG
* *
96756407 TGATTGATTAAAAACTAAAATTAACTAATTAAATAAAC
1 TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
* *
96756445 TGATTGATTAAAAACTAAAATTAACTAATTAAATAAAC
1 TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
96756483 T
1 T
96756484 AAAGAACACA
Statistics
Matches: 39, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.55, C:0.08, G:0.05, T:0.32
Consensus pattern (38 bp):
TGATTGATTAAAAACTAAAATTAACCAATCAAATAAAC
Found at i:96760104 original size:23 final size:23
Alignment explanation
Indices: 96760061--96760104 Score: 54
Period size: 23 Copynumber: 1.9 Consensus size: 23
96760051 GTAATGCTTA
*
96760061 TCAAATCAAACATAAATAATAAT
1 TCAAATCAAAAATAAATAATAAT
*
96760084 TCAAAT-AAAAATTAATGAATA
1 TCAAATCAAAAATAAAT-AATA
96760105 GGGTTCCTGT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 8 0.44
23 10 0.56
ACGTcount: A:0.61, C:0.09, G:0.02, T:0.27
Consensus pattern (23 bp):
TCAAATCAAAAATAAATAATAAT
Found at i:96760340 original size:36 final size:36
Alignment explanation
Indices: 96760300--96760370 Score: 115
Period size: 36 Copynumber: 2.0 Consensus size: 36
96760290 ATTTTCATTT
*
96760300 GAGCACATTTAGTAGGACCAGTAGATATTGCTCGTG
1 GAGCACATTTAGTAGAACCAGTAGATATTGCTCGTG
* *
96760336 GAGCACTTTTAGTAGAATCAGTAGATATTGCTCGT
1 GAGCACATTTAGTAGAACCAGTAGATATTGCTCGT
96760371 ACTTCAATAG
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
36 32 1.00
ACGTcount: A:0.28, C:0.15, G:0.25, T:0.31
Consensus pattern (36 bp):
GAGCACATTTAGTAGAACCAGTAGATATTGCTCGTG
Found at i:96760442 original size:36 final size:36
Alignment explanation
Indices: 96760195--96760608 Score: 308
Period size: 37 Copynumber: 11.4 Consensus size: 36
96760185 GAAAATCTTA
* * *
96760195 TTCAGTATAATCAGTGGATATTGCTCGTTTGAACAACT
1 TTCAGTAGAATCAGTAGATATTGCTCG-TTGAGC-ACT
* *
96760233 ATTC-GACAAAATCAGTAGATATTGCTCGTTTGAGCAC-
1 -TTCAG-TAGAATCAGTAGATATTGCTCG-TTGAGCACT
* * * *
96760270 TTCAGTAGAATAAGTAGACAATT-TTCATTTGAGCACAT
1 TTCAGTAGAATCAGTAGA-TATTGCTC-GTTGAGCAC-T
* * *
96760308 TT-AGTAGGACCAGTAGATATTGCTCGTGGAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACT
*
96760343 TTTAGTAGAATCAGTAGATATTGCTCG-T----AC-
1 TTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACT
* * * * ** *
96760373 TTCAATAGAATCAATAAACATTGCTTATTTGAGCACA
1 TTCAGTAGAATCAGTAGATATTGC-TCGTTGAGCACT
* * *
96760410 TTCAGTAGGATCAGTAGATACTGCTTGTTGAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACT
* * *
96760446 TTCAGTAGAATTAGTAGATATTGCTTGTTTAAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTCG-TTGAGCACT
* * * * *
96760483 TTCACTAGAATAAGTAGACATGGCTCATTGAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACT
* * * *
96760519 TTTAGAAGCATCAGTAGATATTGCTCATTTGAGCACT
1 TTCAGTAGAATCAGTAGATATTGCTC-GTTGAGCACT
* *
96760556 TTCAATAGAATCAGTAGATATTGCTCGTTTGACCACT
1 TTCAGTAGAATCAGTAGATATTGCTCG-TTGAGCACT
*
96760593 TTCAGTAGAATTAGTA
1 TTCAGTAGAATCAGTA
96760609 TTCCATTTTT
Statistics
Matches: 294, Mismatches: 63, Indels: 38
0.74 0.16 0.10
Matches are distributed among these distances:
30 19 0.06
31 3 0.01
32 1 0.00
35 3 0.01
36 117 0.40
37 118 0.40
38 5 0.02
39 28 0.10
ACGTcount: A:0.31, C:0.16, G:0.19, T:0.34
Consensus pattern (36 bp):
TTCAGTAGAATCAGTAGATATTGCTCGTTGAGCACT
Found at i:96760481 original size:73 final size:72
Alignment explanation
Indices: 96760246--96760608 Score: 258
Period size: 73 Copynumber: 5.1 Consensus size: 72
96760236 CGACAAAATC
** * * * ** *
96760246 AGTAGATATTGCTCGTTTGAGCAC-TTCAGTAGAATAAGTAGACAATTTTCATTTGAGCACATTT
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGA-TATGCTC-GTTGAGCAC-TTT
* **
96760310 -AGTAGGACC
63 CAGTAGAATT
** * * *
96760319 AGTAGATATTGC-TCGTGGAGCACTTTTAGTAGAATCAGTAGATATTGCTCG-T----AC-TTCA
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATA-TGCTCGTTGAGCACTTTCA
* *
96760377 ATAGAATC
65 GTAGAATT
* * * * * * *
96760385 AATAAACATTGCTTATTTGAGCACATTCAGTAGGATCAGTAGATACTGCTTGTTGAGCACTTTCA
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATA-TGCTCGTTGAGCACTTTCA
96760450 GTAGAATT
65 GTAGAATT
* * * * * * *
96760458 AGTAGATATTGCTTGTTTAAGCACTTTCACTAGAATAAGTAGACATGGCTCATTGAGCACTTTTA
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATAT-GCTCGTTGAGCACTTTCA
* * *
96760523 GAAGCATC
65 GTAGAATT
* *
96760531 AGTAGATATTGCTCATTTGAGCACTTTCAATAGAATCAGTAGATATTGCTCGTTTGACCACTTTC
1 AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATA-TGCTCG-TTGAGCACTTTC
96760596 AGTAGAATT
64 AGTAGAATT
96760605 AGTA
1 AGTA
96760609 TTCCATTTTT
Statistics
Matches: 223, Mismatches: 54, Indels: 25
0.74 0.18 0.08
Matches are distributed among these distances:
65 2 0.01
66 15 0.07
67 33 0.15
68 1 0.00
71 1 0.00
72 11 0.05
73 139 0.62
74 21 0.09
ACGTcount: A:0.31, C:0.15, G:0.20, T:0.34
Consensus pattern (72 bp):
AGTAGATATTGCTTATTTGAGCACTTTCAATAGAATCAGTAGATATGCTCGTTGAGCACTTTCAG
TAGAATT
Found at i:96762496 original size:27 final size:27
Alignment explanation
Indices: 96762465--96762642 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96762455 TAAATTGTAC
96762465 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
96762492 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96762518 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
96762546 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96762574 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96762601 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96762628 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96762643 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96762579 original size:82 final size:81
Alignment explanation
Indices: 96762466--96762621 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96762456 AAATTGTACA
* *
96762466 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
96762530 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
96762547 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
96762612 TGCGAGTTGA
65 TGCGAATTGA
96762622 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:96762633 original size:82 final size:81
Alignment explanation
Indices: 96762462--96762642 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
96762452 GATTAAATTG
* *
96762462 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
96762527 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
96762543 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
96762607 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
96762625 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
96762643 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:96770686 original size:27 final size:27
Alignment explanation
Indices: 96770655--96770832 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
96770645 TAAATTGTAC
96770655 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
96770682 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96770708 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
96770736 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
96770764 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
96770791 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
96770818 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
96770833 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:96770769 original size:82 final size:81
Alignment explanation
Indices: 96770656--96770811 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
96770646 AAATTGTACA
* *
96770656 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
96770720 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
96770737 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
96770802 TGCGAGTTGA
65 TGCGAATTGA
96770812 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:96770823 original size:82 final size:81
Alignment explanation
Indices: 96770652--96770832 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
96770642 GATTAAATTG
* *
96770652 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
96770717 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
96770733 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
96770797 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
96770815 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
96770833 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:96776711 original size:17 final size:17
Alignment explanation
Indices: 96776689--96776722 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
96776679 TAGAACTTAA
96776689 TTATAAATCATTTGAGT
1 TTATAAATCATTTGAGT
96776706 TTATAAATCATTTGAGT
1 TTATAAATCATTTGAGT
96776723 CCTAATTACA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.06, G:0.12, T:0.47
Consensus pattern (17 bp):
TTATAAATCATTTGAGT
Found at i:96777083 original size:16 final size:17
Alignment explanation
Indices: 96777056--96777090 Score: 54
Period size: 16 Copynumber: 2.1 Consensus size: 17
96777046 AATAATCAGG
*
96777056 TTGAGAAAATTATTTAA
1 TTGAGAAAATTAATTAA
96777073 TTGAG-AAATTAATTAA
1 TTGAGAAAATTAATTAA
96777089 TT
1 TT
96777091 TAATTTAATT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.46, C:0.00, G:0.11, T:0.43
Consensus pattern (17 bp):
TTGAGAAAATTAATTAA
Found at i:96780783 original size:55 final size:53
Alignment explanation
Indices: 96780639--96780855 Score: 177
Period size: 55 Copynumber: 4.0 Consensus size: 53
96780629 TAACGTGGTA
* * * * *
96780639 TCCTTTTGAAGCTTACCATTGCAATGTCTTGACATGGTCTTACATGGTATCCTT
1 TCCTTATGAA-CTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
* * *
96780693 TCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTTTTACATGGGA-CCTT
1 TCCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
* * ***
96780745 TGCCTTATAGTAACTTATCAATGCCATGTCTTGACATGGTCTTACATGATTTCCTT
1 T-CCTTAT-G-AACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
* * ** * * *
96780801 GCCTTA-GAAACCTTACCAATTAACATGCCTTGGCATGGTCTTACATGGTATCCTT
1 TCCTTATG-AA-CTCACCAA-TGCCATGTCTTGACATGGTCTTACATGGGATCCTT
96780856 AAACCCTAAT
Statistics
Matches: 132, Mismatches: 25, Indels: 11
0.79 0.15 0.07
Matches are distributed among these distances:
52 5 0.04
53 40 0.30
54 17 0.13
55 66 0.50
56 4 0.03
ACGTcount: A:0.23, C:0.24, G:0.17, T:0.37
Consensus pattern (53 bp):
TCCTTATGAACTCACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTT
Found at i:96787080 original size:16 final size:16
Alignment explanation
Indices: 96787061--96787091 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
96787051 CTTCTTCACT
96787061 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
96787077 TACTTACTTACTTAA
1 TACTCACTTACTTAA
96787092 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:96787097 original size:20 final size:20
Alignment explanation
Indices: 96787058--96787097 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
96787048 AAACTTCTTC
* *
96787058 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
96787078 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
96787098 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:96799364 original size:25 final size:25
Alignment explanation
Indices: 96799334--96799384 Score: 102
Period size: 25 Copynumber: 2.0 Consensus size: 25
96799324 GAAAGAGATG
96799334 AACTTTTCATGCATTTTCATGTTTT
1 AACTTTTCATGCATTTTCATGTTTT
96799359 AACTTTTCATGCATTTTCATGTTTT
1 AACTTTTCATGCATTTTCATGTTTT
96799384 A
1 A
96799385 TTTATTTAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.22, C:0.16, G:0.08, T:0.55
Consensus pattern (25 bp):
AACTTTTCATGCATTTTCATGTTTT
Found at i:96802477 original size:46 final size:48
Alignment explanation
Indices: 96802333--96802502 Score: 235
Period size: 47 Copynumber: 3.6 Consensus size: 48
96802323 ATTGTTGGCT
96802333 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAGATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCCAGATTATGAGAGCC
* * * *
96802379 AGTGTAAGACCATGTCTGGGACATCGCATCAG-CATTGA-GACGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCCA--GATTATGAGAGCC
96802427 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCAGATTATGAGAGCC
1 AGTGTAAGACCATGTCTGGGACATCGCATCGGCCAGATTATGAGAGCC
*
96802473 AGTGTAAGACCATGTCTGGGACATGGCATC
1 AGTGTAAGACCATGTCTGGGACATCGCATC
96802503 AACACCTTAC
Statistics
Matches: 108, Mismatches: 8, Indels: 14
0.83 0.06 0.11
Matches are distributed among these distances:
45 2 0.02
46 31 0.29
47 46 0.43
48 27 0.25
49 2 0.02
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATCGCATCGGCCAGATTATGAGAGCC
Found at i:96802491 original size:94 final size:94
Alignment explanation
Indices: 96802330--96802503 Score: 339
Period size: 94 Copynumber: 1.9 Consensus size: 94
96802320 GTTATTGTTG
96802330 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGAGAGCCAGTGTAAGACCATGTC
96802395 TGGGACATCGCATCAGCATTGAGACGAGA
66 TGGGACATCGCATCAGCATTGAGACGAGA
96802424 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGAGAGCCAGTGTAAGACCATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGAGAGCCAGTGTAAGACCATGTC
*
96802489 TGGGACATGGCATCA
66 TGGGACATCGCATCA
96802504 ACACCTTACC
Statistics
Matches: 79, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
94 79 1.00
ACGTcount: A:0.28, C:0.20, G:0.30, T:0.22
Consensus pattern (94 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGGCCAGATTATGAGAGCCAGTGTAAGACCATGTC
TGGGACATCGCATCAGCATTGAGACGAGA
Found at i:96804665 original size:28 final size:29
Alignment explanation
Indices: 96804633--96804694 Score: 72
Period size: 29 Copynumber: 2.2 Consensus size: 29
96804623 TACCTGTATC
* * *
96804633 TGGCCCATTAAGCCC-CATCATATTCATA
1 TGGCCCAGTAAGCCCAAATCACATTCATA
* *
96804661 TGGCCCAGTAGGCCCAAATCACATTTATA
1 TGGCCCAGTAAGCCCAAATCACATTCATA
96804690 TGGCC
1 TGGCC
96804695 TGTTAGACCC
Statistics
Matches: 28, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
28 13 0.46
29 15 0.54
ACGTcount: A:0.27, C:0.31, G:0.16, T:0.26
Consensus pattern (29 bp):
TGGCCCAGTAAGCCCAAATCACATTCATA
Found at i:96804960 original size:8 final size:8
Alignment explanation
Indices: 96804929--96804963 Score: 52
Period size: 8 Copynumber: 4.4 Consensus size: 8
96804919 GTAGCTAAAC
*
96804929 TTTCAGCT
1 TTTCGGCT
*
96804937 TTTCGGCG
1 TTTCGGCT
96804945 TTTCGGCT
1 TTTCGGCT
96804953 TTTCGGCT
1 TTTCGGCT
96804961 TTT
1 TTT
96804964 TGGCATTTCA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
8 24 1.00
ACGTcount: A:0.03, C:0.23, G:0.23, T:0.51
Consensus pattern (8 bp):
TTTCGGCT
Found at i:96806098 original size:16 final size:16
Alignment explanation
Indices: 96806079--96806111 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
96806069 CGAGAATTCA
96806079 GGATTTCAG-GATTTTT
1 GGATTTC-GTGATTTTT
96806095 GGATTTCGTGATTTTT
1 GGATTTCGTGATTTTT
96806111 G
1 G
96806112 AGGCGTTACA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 1 0.06
16 15 0.94
ACGTcount: A:0.15, C:0.06, G:0.27, T:0.52
Consensus pattern (16 bp):
GGATTTCGTGATTTTT
Found at i:96819032 original size:13 final size:13
Alignment explanation
Indices: 96818993--96819032 Score: 62
Period size: 13 Copynumber: 3.1 Consensus size: 13
96818983 AAAGTAATCG
96818993 CACACGGGCGTGT
1 CACACGGGCGTGT
* *
96819006 AACATGGGCGTGT
1 CACACGGGCGTGT
96819019 CACACGGGCGTGT
1 CACACGGGCGTGT
96819032 C
1 C
96819033 CCTGCCGAGC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.17, C:0.28, G:0.38, T:0.17
Consensus pattern (13 bp):
CACACGGGCGTGT
Found at i:96829584 original size:21 final size:20
Alignment explanation
Indices: 96829554--96829592 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
96829544 TTGAGTTGGT
*
96829554 CACACGGGCGTGTTGCCCTTC
1 CACACAGGCGTG-TGCCCTTC
96829575 CACACAGGCGTGTGCCCT
1 CACACAGGCGTGTGCCCT
96829593 ATTTTAAGGA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.13, C:0.38, G:0.28, T:0.21
Consensus pattern (20 bp):
CACACAGGCGTGTGCCCTTC
Found at i:96832793 original size:46 final size:46
Alignment explanation
Indices: 96832733--96833052 Score: 437
Period size: 46 Copynumber: 7.0 Consensus size: 46
96832723 TTTGACATGA
* * * * * * *
96832733 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
** * *
96832779 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATGTCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCAGGT
*
96832825 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
** *
96832871 TGCCATGGTATCTTTCAACCATGGTCTTATTC-TTTTCATATCACGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTT-ATATCAGGT
*
96832917 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
*
96832963 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGT
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
* *
96833009 AGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAG
96833053 AGAGCACACT
Statistics
Matches: 250, Mismatches: 20, Indels: 8
0.90 0.07 0.03
Matches are distributed among these distances:
45 7 0.03
46 237 0.95
47 6 0.02
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (46 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTTATATCAGGT
Found at i:96832890 original size:92 final size:92
Alignment explanation
Indices: 96832733--96833052 Score: 514
Period size: 92 Copynumber: 3.5 Consensus size: 92
96832723 TTTGACATGA
* * * * ** * *
96832733 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTTTTGTCATGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
*
96832798 CATGGTCTTATTCTTTTCATGTCACGT
66 CATGGTCTTATTCTTTTCATATCACGT
96832825 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
96832890 CATGGTCTTATTCTTTTCATATCACGT
66 CATGGTCTTATTCTTTTCATATCACGT
96832917 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
** * *
96832982 CATGGTCTTACACATTTCATATCAGGT
66 CATGGTCTTATTCTTTTCATATCACGT
*
96833009 AGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
1 TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAG
96833053 AGAGCACACT
Statistics
Matches: 214, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
92 214 1.00
ACGTcount: A:0.22, C:0.23, G:0.15, T:0.40
Consensus pattern (92 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAAC
CATGGTCTTATTCTTTTCATATCACGT
Found at i:96832981 original size:138 final size:138
Alignment explanation
Indices: 96832733--96833051 Score: 487
Period size: 138 Copynumber: 2.3 Consensus size: 138
96832723 TTTGACATGA
* * * * * *
96832733 TGCCATAGTGTCTTTCAACTATGGTCTTACTCATTTT-TTGTCATGTTGCCATGGTATCTTTCAA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTC-TTTTCATATCACGTTGCCATGGTATCTTTCAA
** * *
96832797 CCATGGTCTTATTCTTTTCATGTCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
65 CCATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTC
96832862 ATATCAGGT
130 ATATCAGGT
*
96832871 TGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATATCACGTTGCCATGGTATCTTTCAAC
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATATCACGTTGCCATGGTATCTTTCAAC
*
96832936 CATGGTCTTACACATTTCATATCAGGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
66 CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
96833001 TATCAGGT
131 TATCAGGT
* * *
96833009 AGCCATGGTATCTTTCAACCATGGTCTTACACATTTCATATCA
1 TGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATATCA
96833052 GAGAGCACAC
Statistics
Matches: 164, Mismatches: 16, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
137 4 0.02
138 160 0.98
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (138 bp):
TGCCATGGTATCTTTCAACCATGGTCTTACTCTTTTCATATCACGTTGCCATGGTATCTTTCAAC
CATGGTCTTACACATTTCATATCACGTTGCCATGGTATCTTTCAACCATGGTCTTACACATTTCA
TATCAGGT
Found at i:96836358 original size:27 final size:26
Alignment explanation
Indices: 96836318--96836422 Score: 111
Period size: 27 Copynumber: 3.9 Consensus size: 26
96836308 AGGAAGCGTC
*
96836318 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
* *
96836345 CTGGTGGCTCTGCCACATACATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
* *
96836372 CTGGTGGTTTTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* *
96836400 CTGGTGACTCTGTCACATTATCT
1 CTGGTGGCTCTGCCACATTATCT
96836423 ATTCTGGCAG
Statistics
Matches: 64, Mismatches: 11, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
26 2 0.03
27 47 0.73
28 15 0.23
ACGTcount: A:0.17, C:0.24, G:0.22, T:0.37
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:96836428 original size:54 final size:54
Alignment explanation
Indices: 96836318--96836429 Score: 145
Period size: 54 Copynumber: 2.1 Consensus size: 54
96836308 AGGAAGCGTC
* *
96836318 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATACATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATACATCTATT
* * * * *
96836372 CTGGTGGTTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTATT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATACATCTATT
96836426 CTGG
1 CTGG
96836430 CAGCCATGCT
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
54 32 0.64
55 18 0.36
ACGTcount: A:0.17, C:0.23, G:0.22, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATACATCTATT
Found at i:96844198 original size:13 final size:13
Alignment explanation
Indices: 96844180--96844208 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
96844170 TTTACTTTAA
96844180 TTAGTTAATTAGT
1 TTAGTTAATTAGT
96844193 TTAGTTAATTAGT
1 TTAGTTAATTAGT
96844206 TTA
1 TTA
96844209 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:96849608 original size:12 final size:12
Alignment explanation
Indices: 96849591--96849639 Score: 53
Period size: 12 Copynumber: 3.9 Consensus size: 12
96849581 AATCCTCTTA
96849591 TCTTTTTATTTT
1 TCTTTTTATTTT
*
96849603 TCTTTTTTTCTTTT
1 TC--TTTTTATTTT
96849617 TCTTTTTATTTT
1 TCTTTTTATTTT
* *
96849629 TATTTTCATTT
1 TCTTTTTATTT
96849640 CAATTTTCTT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
12 20 0.65
14 11 0.35
ACGTcount: A:0.08, C:0.10, G:0.00, T:0.82
Consensus pattern (12 bp):
TCTTTTTATTTT
Found at i:96849616 original size:14 final size:14
Alignment explanation
Indices: 96849593--96849623 Score: 53
Period size: 14 Copynumber: 2.2 Consensus size: 14
96849583 TCCTCTTATC
96849593 TTTTTATTTTTCTT
1 TTTTTATTTTTCTT
*
96849607 TTTTTCTTTTTCTT
1 TTTTTATTTTTCTT
96849621 TTT
1 TTT
96849624 ATTTTTATTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.03, C:0.10, G:0.00, T:0.87
Consensus pattern (14 bp):
TTTTTATTTTTCTT
Found at i:96849616 original size:20 final size:20
Alignment explanation
Indices: 96849591--96849629 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
96849581 AATCCTCTTA
*
96849591 TCTTTTTATTTTTCTTTTTT
1 TCTTTTTATTTTTATTTTTT
*
96849611 TCTTTTTCTTTTTATTTTT
1 TCTTTTTATTTTTATTTTT
96849630 ATTTTCATTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.05, C:0.10, G:0.00, T:0.85
Consensus pattern (20 bp):
TCTTTTTATTTTTATTTTTT
Found at i:96852548 original size:13 final size:13
Alignment explanation
Indices: 96852530--96852558 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
96852520 TTTACTTTAA
96852530 TTAGTTAATTAGT
1 TTAGTTAATTAGT
96852543 TTAGTTAATTAGT
1 TTAGTTAATTAGT
96852556 TTA
1 TTA
96852559 ATAAACAACC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.31, C:0.00, G:0.14, T:0.55
Consensus pattern (13 bp):
TTAGTTAATTAGT
Found at i:96855919 original size:40 final size:39
Alignment explanation
Indices: 96855888--96856097 Score: 233
Period size: 40 Copynumber: 5.3 Consensus size: 39
96855878 GGACTAAGAT
* *
96855888 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
96855928 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
96855968 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* ** *
96856008 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGAT-ACAAATCCGGGTTAAGTC
* * * * *
96856048 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
96856087 CCGAAGGCATT
1 CCGAAGGCATT
96856098 TGAACGAGGA
Statistics
Matches: 153, Mismatches: 13, Indels: 9
0.87 0.07 0.05
Matches are distributed among these distances:
39 33 0.22
40 117 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:96856051 original size:120 final size:120
Alignment explanation
Indices: 96855835--96856097 Score: 300
Period size: 120 Copynumber: 2.2 Consensus size: 120
96855825 TTGAATGCTG
* *
96855835 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
96855899 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
96855955 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* ** * * * *
96856018 TCGTGCGAGTTGTTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGAT-ACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
96856074 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
96856098 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 20, Indels: 7
0.82 0.14 0.05
Matches are distributed among these distances:
119 38 0.32
120 73 0.61
121 9 0.08
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:96856117 original size:79 final size:80
Alignment explanation
Indices: 96855888--96856132 Score: 228
Period size: 80 Copynumber: 3.1 Consensus size: 80
96855878 GGACTAAGAT
* * * * * * * ** *
96855888 CCGAAGGCATTTGTGCGAGATAC-AAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGA-GATAC
1 CCGAAGGCATTCGTGCGAGTTACTAAA-ACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGA-GC
96855951 TAAATCCGGGTTAAGTC
64 TAAATCCGGGTTAAGTC
* * * ** ** *
96855968 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
*
96856033 AATCCGGGTTATGTC
66 AATCCGGGTTAAGTC
* * *
96856048 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATTTGAACGAGGAGCTA
1 CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
* *
96856112 TATCC-GGTTAAATC
66 AATCCGGGTTAAGTC
96856126 CCGAAGG
1 CCGAAGG
96856133 TACGTGATTT
Statistics
Matches: 138, Mismatches: 25, Indels: 6
0.82 0.15 0.04
Matches are distributed among these distances:
78 14 0.10
79 46 0.33
80 75 0.54
81 3 0.02
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGGCATTCGAACGAGGAGCTA
AATCCGGGTTAAGTC
Found at i:96868175 original size:68 final size:67
Alignment explanation
Indices: 96868103--96868252 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
96868093 CATCATGTGT
* * * *
96868103 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
96868165 ATGTAG
62 ATGTAG
** * *
96868171 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
96868236 AG
66 AG
96868238 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
96868253 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:96868208 original size:64 final size:64
Alignment explanation
Indices: 96868127--96868310 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
96868117 AGACATTATG
* *
96868127 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
96868191 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
96868256 AA
63 AA
* * * *
96868258 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
96868311 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:96884846 original size:48 final size:48
Alignment explanation
Indices: 96884721--96884941 Score: 189
Period size: 48 Copynumber: 4.6 Consensus size: 48
96884711 ATGAGATTTC
* * * * *
96884721 GTGTAAGACCATGTCTGGGACATGGCATCGACAT-TTGAGATGTGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCG--GTGATAATATATGTGCCT
* * *
96884770 GTGTAAGACCATGTCTGGGACATTGCATCGGTGATAATGTATGTGACT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATAATATATGTGCCT
* * * * *
96884818 GTGTAAGAACATGTCTGGGATATGGCATC-GTCGATGATATGTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGT-GATAATATATGTGCCT
* * * * **
96884866 GTGTAAGACCATATCTGGGACATGGCATCGATGATGATATGTG-GATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGTGATAATATATGTGCCT
*
96884913 CATGTAAGACCATGT-TGGGGACATGGCAT
1 -GTGTAAGACCATGTCT-GGGACATGGCAT
96884942 TGGTACTTTA
Statistics
Matches: 142, Mismatches: 25, Indels: 11
0.80 0.14 0.06
Matches are distributed among these distances:
47 5 0.04
48 107 0.75
49 30 0.21
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.29
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGTGATAATATATGTGCCT
Found at i:96884919 original size:96 final size:95
Alignment explanation
Indices: 96884722--96884941 Score: 266
Period size: 96 Copynumber: 2.3 Consensus size: 95
96884712 TGAGATTTCG
* *
96884722 TGTAAGACCATGTCTGGGACATGGCATCGACATTTGAGATGTGTGCCTGTGTAAGACCATGTCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGACA-TTGAGATGTGTGCCAGTGTAAGACCATATCTG
* * *
96884787 GGACATTGCATCGGTGATAATGTATGTGACTG
65 GGACATGGCATCGATGATAA-GTATGTGACTA
* * * *
96884819 TGTAAGAACATGTCTGGGATATGGCATCGTCGA-TGATATGTGTGCCAGTGTAAGACCATATCTG
1 TGTAAGACCATGTCTGGGACATGGCATCGAC-ATTGAGATGTGTGCCAGTGTAAGACCATATCTG
* *
96884883 GGACATGGCATCGATGATGA-TATGTGGATTCA
65 GGACATGGCATCGATGATAAGTATGT-GACT-A
96884915 TGTAAGACCATGT-TGGGGACATGGCAT
1 TGTAAGACCATGTCT-GGGACATGGCAT
96884942 TGGTACTTTA
Statistics
Matches: 106, Mismatches: 13, Indels: 9
0.83 0.10 0.07
Matches are distributed among these distances:
94 5 0.05
95 4 0.04
96 68 0.64
97 28 0.26
98 1 0.01
ACGTcount: A:0.25, C:0.15, G:0.30, T:0.29
Consensus pattern (95 bp):
TGTAAGACCATGTCTGGGACATGGCATCGACATTGAGATGTGTGCCAGTGTAAGACCATATCTGG
GACATGGCATCGATGATAAGTATGTGACTA
Found at i:96900532 original size:56 final size:56
Alignment explanation
Indices: 96900465--96900696 Score: 446
Period size: 56 Copynumber: 4.1 Consensus size: 56
96900455 TATTAGTTTA
* *
96900465 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTGATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
96900521 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
96900577 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
96900633 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
96900689 TTGCCCAT
1 TTGCCCAT
96900697 CATCCCTTGT
Statistics
Matches: 174, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 174 1.00
ACGTcount: A:0.23, C:0.22, G:0.09, T:0.46
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
Done.