Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 285 of 297
Found at i:96911156 original size:40 final size:40
Alignment explanation
Indices: 96910958--96911142 Score: 325
Period size: 40 Copynumber: 4.6 Consensus size: 40
96910948 GGATTGATAC
* *
96910958 CCGGGCTAAGTCCCGAAGACATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
96910998 CCGGGCTAAGTCCCAAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
96911038 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
96911078 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
96911118 CCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
96911143 AGCTAGTAGC
Statistics
Matches: 140, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 140 1.00
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:96919788 original size:329 final size:329
Alignment explanation
Indices: 96919190--96919847 Score: 1298
Period size: 329 Copynumber: 2.0 Consensus size: 329
96919180 CCATTGGAAT
96919190 GGTTAATTACGATCATATTTTGTGCTATATATGCTAAAGGGTTAGTTGAATCATGGAAACTATGT
1 GGTTAATTACGATCATATTTTGTGCTATATATGCTAAAGGGTTAGTTGAATCATGGAAACTATGT
* *
96919255 AATAGGTAAAGTCTACCTTAAAGGCAGATGCTGACAGCAGCAGTGGTGTGAATTTTAAAAATCAC
66 AATAGGTAAAGTCTACCTTAAAGGCAGATGCTGACAGCAGCAGTGGTGGGAATTTGAAAAATCAC
96919320 TAAAAATAGTAGGAATGAATTTAAATAGTTAATAAATTATGTAATCGAACCTTGATGAGTCTACT
131 TAAAAATAGTAGGAATGAATTTAAATAGTTAATAAATTATGTAATCGAACCTTGATGAGTCTACT
96919385 TTCATATGGAAGAAACAAAACGGTCATATGAGTCGTATTTCAAGAGATATTTAAGTTTTCGTGGA
196 TTCATATGGAAGAAACAAAACGGTCATATGAGTCGTATTTCAAGAGATATTTAAGTTTTCGTGGA
96919450 ACAGGGCCAGAGCGATTTCTGGATCCCCTGATCTGACTTTGGAAATTTACTATAAATTAACCAGA
261 ACAGGGCCAGAGCGATTTCTGGATCCCCTGATCTGACTTTGGAAATTTACTATAAATTAACCAGA
96919515 GATA
326 GATA
96919519 GGTTAATTACGATCATATTTTGTGCTATATATGCTAAAGGGTTAGTTGAATCATGGAAACTATGT
1 GGTTAATTACGATCATATTTTGTGCTATATATGCTAAAGGGTTAGTTGAATCATGGAAACTATGT
96919584 AATAGGTAAAGTCTACCTTAAAGGCAGATGCTGACAGCAGCAGTGGTGGGAATTTGAAAAATCAC
66 AATAGGTAAAGTCTACCTTAAAGGCAGATGCTGACAGCAGCAGTGGTGGGAATTTGAAAAATCAC
96919649 TAAAAATAGTAGGAATGAATTTAAATAGTTAATAAATTATGTAATCGAACCTTGATGAGTCTACT
131 TAAAAATAGTAGGAATGAATTTAAATAGTTAATAAATTATGTAATCGAACCTTGATGAGTCTACT
96919714 TTCATATGGAAGAAACAAAACGGTCATATGAGTCGTATTTCAAGAGATATTTAAGTTTTCGTGGA
196 TTCATATGGAAGAAACAAAACGGTCATATGAGTCGTATTTCAAGAGATATTTAAGTTTTCGTGGA
96919779 ACAGGGCCAGAGCGATTTCTGGATCCCCTGATCTGACTTTGGAAATTTACTATAAATTAACCAGA
261 ACAGGGCCAGAGCGATTTCTGGATCCCCTGATCTGACTTTGGAAATTTACTATAAATTAACCAGA
96919844 GATA
326 GATA
96919848 TTTAGAAGTC
Statistics
Matches: 327, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
329 327 1.00
ACGTcount: A:0.36, C:0.13, G:0.21, T:0.31
Consensus pattern (329 bp):
GGTTAATTACGATCATATTTTGTGCTATATATGCTAAAGGGTTAGTTGAATCATGGAAACTATGT
AATAGGTAAAGTCTACCTTAAAGGCAGATGCTGACAGCAGCAGTGGTGGGAATTTGAAAAATCAC
TAAAAATAGTAGGAATGAATTTAAATAGTTAATAAATTATGTAATCGAACCTTGATGAGTCTACT
TTCATATGGAAGAAACAAAACGGTCATATGAGTCGTATTTCAAGAGATATTTAAGTTTTCGTGGA
ACAGGGCCAGAGCGATTTCTGGATCCCCTGATCTGACTTTGGAAATTTACTATAAATTAACCAGA
GATA
Found at i:96921016 original size:23 final size:24
Alignment explanation
Indices: 96920972--96921017 Score: 58
Period size: 24 Copynumber: 2.0 Consensus size: 24
96920962 TATGGTATTT
*
96920972 AATTAATTTTGAATAATTTTTATA
1 AATTAATTTTGAATAATATTTATA
* *
96920996 AATTATTTTTGTA-AATATTTAT
1 AATTAATTTTGAATAATATTTAT
96921018 GGTTTTTAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 8 0.42
24 11 0.58
ACGTcount: A:0.39, C:0.00, G:0.04, T:0.57
Consensus pattern (24 bp):
AATTAATTTTGAATAATATTTATA
Found at i:96923176 original size:96 final size:95
Alignment explanation
Indices: 96922974--96923154 Score: 222
Period size: 98 Copynumber: 1.9 Consensus size: 95
96922964 AAAATTTAAT
** * * * *
96922974 TAAATTAATTACT-AATTTTAAAAAATTAGATTATGGTTTAGTGTTTATGGTTTTTAAGGAAAAA
1 TAAATTAATTA-TAAATTAAAAAAAATTAGATTATGGTTTAGGGTTTAGGGTATTTAAGAAAAAA
* *
96923038 ATCAAATAAATTAATGTTTAGGGTTACTTGAG
65 ATCAAATAAATTAAGGTTTAGGGTTA-TAGAG
96923070 TAAATTAATTATAAATTAAAAAAAATTAGATTA-GGATTTTAGGGTTTTAGGGTATTTAAGAAAA
1 TAAATTAATTATAAATTAAAAAAAATTAGATTATGG--TTTAGGG-TTTAGGGTATTTAAGAAAA
*
96923134 AAATCAAATAAATTAGGGTTT
63 AAATCAAATAAATTAAGGTTT
96923155 GGCGTTTAGG
Statistics
Matches: 73, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
95 3 0.04
96 29 0.40
97 6 0.08
98 35 0.48
ACGTcount: A:0.43, C:0.02, G:0.15, T:0.39
Consensus pattern (95 bp):
TAAATTAATTATAAATTAAAAAAAATTAGATTATGGTTTAGGGTTTAGGGTATTTAAGAAAAAAA
TCAAATAAATTAAGGTTTAGGGTTATAGAG
Found at i:96923425 original size:126 final size:126
Alignment explanation
Indices: 96923205--96923617 Score: 623
Period size: 126 Copynumber: 3.3 Consensus size: 126
96923195 AAAAGCTTCT
*
96923205 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAAATTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
96923270 ATAGTGTCAAAAACGCTTCAAGCAAGATGCATTGTCAGCAAAAGTACTGAAAGAAGCTTCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
96923331 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* * *
96923396 ATAGTGGT-AAAAATGCTTCAAGCAGGATGCATTTTCGGCAAAATTACT-AGAAGAAGCTCCC
66 ATAGT-GTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGA-AAGAAGCTCCC
* * * * **
96923457 ACGTGGATGCTCTTTTGCTACAGTGGTCTCTGGAAAAATAATTTTGGGAAGACGTGTCTGCATAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
* *
96923522 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAACAGTATTGAAAGAAGCTCCC
66 ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
* * * *
96923583 ACATGGACACTCTTTTGCTACAGTGGTTTCTGAAA
1 ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAA
96923618 TAACTTAGGC
Statistics
Matches: 260, Mismatches: 23, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
125 3 0.01
126 254 0.98
127 3 0.01
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (126 bp):
ACGTGGACGCTCTTTTGCTACAGTAGTCTCTGAAAAAATAATTTTGAGAAGACGTGTCTGCGCAA
ATAGTGTCAAAAACGCTTCAAGCAGGATGCATTTTCAGCAAAAGTACTGAAAGAAGCTCCC
Found at i:96926926 original size:117 final size:117
Alignment explanation
Indices: 96926634--96927137 Score: 927
Period size: 117 Copynumber: 4.3 Consensus size: 117
96926624 TTTATATTTT
* * *
96926634 ATTACATGAAATAATATAAAAATATTCAAAATATTGCTTTATTTAAAATAATTTTCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
* * *
96926699 AAAATATAAAAGTAAATTATAATTACTTTATTTAAAACAACCTTTTATATATT
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTT-TATCTA
*
96926752 ATCACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
96926817 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTTATCTA
96926869 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
96926934 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTTATCTA
96926986 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
1 ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
96927051 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTTATCTA
66 AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTTATCTA
*
96927103 ATTACATGAAATAATATAAAAAGATTCAAAATGTT
1 ATTACATGAAATAATATAAAAATATTCAAAATGTT
96927138 TGTACAAATA
Statistics
Matches: 377, Mismatches: 9, Indels: 1
0.97 0.02 0.00
Matches are distributed among these distances:
117 271 0.72
118 106 0.28
ACGTcount: A:0.47, C:0.09, G:0.04, T:0.40
Consensus pattern (117 bp):
ATTACATGAAATAATATAAAAATATTCAAAATGTTGCCTTATTTAAAATAATTTCCATTTTATTA
AAAATATAAAAGTAAATTACAATTACTTTATTTAAAACAACCTTTTTATCTA
Found at i:96928191 original size:7 final size:7
Alignment explanation
Indices: 96928181--96928228 Score: 96
Period size: 7 Copynumber: 6.9 Consensus size: 7
96928171 GTTAAATAAA
96928181 AAATACT
1 AAATACT
96928188 AAATACT
1 AAATACT
96928195 AAATACT
1 AAATACT
96928202 AAATACT
1 AAATACT
96928209 AAATACT
1 AAATACT
96928216 AAATACT
1 AAATACT
96928223 AAATAC
1 AAATAC
96928229 GAATCCACTA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.58, C:0.15, G:0.00, T:0.27
Consensus pattern (7 bp):
AAATACT
Found at i:96928198 original size:21 final size:21
Alignment explanation
Indices: 96928173--96928220 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
96928163 AAATATTAGT
96928173 TAAATAAAAAATACTAAATAC
1 TAAATAAAAAATACTAAATAC
**
96928194 TAAATACTAAATACTAAATAC
1 TAAATAAAAAATACTAAATAC
96928215 TAAATA
1 TAAATA
96928221 CTAAATACGA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.62, C:0.10, G:0.00, T:0.27
Consensus pattern (21 bp):
TAAATAAAAAATACTAAATAC
Found at i:96929351 original size:15 final size:15
Alignment explanation
Indices: 96929331--96929361 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
96929321 TTTTTATTTT
*
96929331 AAAAAATAAATTTAG
1 AAAAAATAAAATTAG
96929346 AAAAAATAAAATTAG
1 AAAAAATAAAATTAG
96929361 A
1 A
96929362 GCTTTTTTGA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.71, C:0.00, G:0.06, T:0.23
Consensus pattern (15 bp):
AAAAAATAAAATTAG
Found at i:96929400 original size:22 final size:22
Alignment explanation
Indices: 96929388--96929437 Score: 77
Period size: 20 Copynumber: 2.4 Consensus size: 22
96929378 TAACGAGAGT
96929388 TTTGAGAGGAATTTAAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
*
96929410 TTTGAGA-G-ATTTGAGAGAAA
1 TTTGAGAGGAATTTAAGAGAAA
96929430 TTTGAGAG
1 TTTGAGAG
96929438 AATATTGAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
20 18 0.69
21 1 0.04
22 7 0.27
ACGTcount: A:0.40, C:0.00, G:0.30, T:0.30
Consensus pattern (22 bp):
TTTGAGAGGAATTTAAGAGAAA
Found at i:96929411 original size:11 final size:11
Alignment explanation
Indices: 96929388--96929439 Score: 72
Period size: 11 Copynumber: 4.9 Consensus size: 11
96929378 TAACGAGAGT
*
96929388 TTTGAGAGGAA
1 TTTGAGAGAAA
*
96929399 TTTAAGAGAAA
1 TTTGAGAGAAA
96929410 TTTGAGAG--A
1 TTTGAGAGAAA
96929419 TTTGAGAGAAA
1 TTTGAGAGAAA
96929430 TTTGAGAGAA
1 TTTGAGAGAA
96929440 TATTGAAAGA
Statistics
Matches: 36, Mismatches: 3, Indels: 4
0.84 0.07 0.09
Matches are distributed among these distances:
9 9 0.25
11 27 0.75
ACGTcount: A:0.42, C:0.00, G:0.29, T:0.29
Consensus pattern (11 bp):
TTTGAGAGAAA
Found at i:96929451 original size:31 final size:31
Alignment explanation
Indices: 96929388--96929451 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
96929378 TAACGAGAGT
* *
96929388 TTTGAGAGGAATTTAAGAGAAATTTGAGAGA
1 TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
*
96929419 TTTGAGAGAAATTTGAGAG-AATATTGAAAGA
1 TTTGAGAGAAATTTAAGAGAAAT-TTGAAAGA
96929450 TT
1 TT
96929452 GAAGATTGAA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
30 3 0.10
31 26 0.90
ACGTcount: A:0.42, C:0.00, G:0.27, T:0.31
Consensus pattern (31 bp):
TTTGAGAGAAATTTAAGAGAAATTTGAAAGA
Found at i:96932578 original size:78 final size:80
Alignment explanation
Indices: 96932438--96932602 Score: 203
Period size: 78 Copynumber: 2.1 Consensus size: 80
96932428 CCATGCTATT
* **
96932438 CGAACCCCTACATACATTGATATACATGGAAACCCTGTTGTAAGTGGATAGACAAATTGTAGC-T
1 CGAACCCCAACATACATTGATATACATGGAAACCCTGTTGTAAGTGGATAGACAAACCGTAGCAT
* *
96932502 -TATATATATATATG
66 GTATATACACATATG
* * *
96932516 CGAACTCCAACATACATTGATATACATGCG-AATCCTGTTGTAAGTGGATA-AGCGAACCGTAGC
1 CGAACCCCAACATACATTGATATACATG-GAAACCCTGTTGTAAGTGGATAGA-CAAACCGTAGC
96932579 ATGTATATACACATATG
64 ATGTATATACACATATG
*
96932596 CAAACCC
1 CGAACCC
96932603 TCATGATTTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
77 1 0.01
78 53 0.73
79 2 0.03
80 17 0.23
ACGTcount: A:0.36, C:0.20, G:0.17, T:0.27
Consensus pattern (80 bp):
CGAACCCCAACATACATTGATATACATGGAAACCCTGTTGTAAGTGGATAGACAAACCGTAGCAT
GTATATACACATATG
Found at i:96932691 original size:18 final size:17
Alignment explanation
Indices: 96932657--96932708 Score: 59
Period size: 18 Copynumber: 2.9 Consensus size: 17
96932647 AAAGTATGTG
*
96932657 AACCCTATTTATCATGC
1 AACCCTATATATCATGC
*
96932674 TAACCCTATATATTATGC
1 -AACCCTATATATCATGC
*
96932692 AAGCCTCATATATCATG
1 AACCCT-ATATATCATG
96932709 GGAACCCTAC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
17 5 0.17
18 24 0.83
ACGTcount: A:0.33, C:0.25, G:0.08, T:0.35
Consensus pattern (17 bp):
AACCCTATATATCATGC
Found at i:96932949 original size:14 final size:14
Alignment explanation
Indices: 96932881--96933048 Score: 92
Period size: 14 Copynumber: 11.7 Consensus size: 14
96932871 TAGGTACAAG
*
96932881 CCCAGATGTGCAAA
1 CCCATATGTGCAAA
*
96932895 CCCTATATGTGCGAA
1 CCC-ATATGTGCAAA
* * *
96932910 CCGTACATGTTCAAAA
1 CC-CATATGTGC-AAA
*
96932926 CCC-TAGGTGCAAA
1 CCCATATGTGCAAA
*
96932939 CCCATATGTGCAAG
1 CCCATATGTGCAAA
* * *
96932953 CCC-TAGGTACGAA
1 CCCATATGTGCAAA
*
96932966 CCCATATGTGCGAA
1 CCCATATGTGCAAA
* *
96932980 CCCTGTATCTGCAAA
1 CCC-ATATGTGCAAA
96932995 CCC-TACGTGTGCGAAA
1 CCCATA--TGTGC-AAA
* * *
96933011 CCCA-AGGTACGAA
1 CCCATATGTGCAAA
96933024 CCCATATGTGCAAA
1 CCCATATGTGCAAA
96933038 CCCTATATGTG
1 CCC-ATATGTG
96933049 TGAAACCGTG
Statistics
Matches: 114, Mismatches: 28, Indels: 23
0.69 0.17 0.14
Matches are distributed among these distances:
13 23 0.20
14 41 0.36
15 39 0.34
16 11 0.10
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.21
Consensus pattern (14 bp):
CCCATATGTGCAAA
Found at i:96932960 original size:27 final size:28
Alignment explanation
Indices: 96932923--96933042 Score: 104
Period size: 27 Copynumber: 4.3 Consensus size: 28
96932913 TACATGTTCA
*
96932923 AAACCCTAGGTGCAAACCCATATGTGC-
1 AAACCCTAGGTACAAACCCATATGTGCG
* *
96932950 AAGCCCTAGGTACGAACCCATATGTGCG
1 AAACCCTAGGTACAAACCCATATGTGCG
** *
96932978 -AACCCTGTATCTGCAAACCC-TACGTGTGCG
1 AAACCC--TAGGTACAAACCCATA--TGTGCG
* *
96933008 AAACCCAAGGTACGAACCCATATGTGC-
1 AAACCCTAGGTACAAACCCATATGTGCG
96933035 AAACCCTA
1 AAACCCTA
96933043 TATGTGTGAA
Statistics
Matches: 72, Mismatches: 14, Indels: 14
0.72 0.14 0.14
Matches are distributed among these distances:
27 35 0.49
28 7 0.10
29 17 0.24
30 8 0.11
31 5 0.07
ACGTcount: A:0.32, C:0.31, G:0.19, T:0.18
Consensus pattern (28 bp):
AAACCCTAGGTACAAACCCATATGTGCG
Found at i:96932982 original size:85 final size:85
Alignment explanation
Indices: 96932853--96933042 Score: 213
Period size: 85 Copynumber: 2.2 Consensus size: 85
96932843 TACTATGTGG
** * * * *
96932853 AACCC-TATGTGTGAGCCGTAGGTACAAGCCCAGATGTGCAAACCCTATATGTGCGAACCGTACA
1 AACCCATATGTGCAAGCCCTAGGTACAAGCCCAGATGTGCAAACCCTATATCTGCAAACCCTACA
* * *
96932917 TGTTCAAAACCCTAGGTGCA
66 TGTGCAAAACCCAAGGTACA
* * *
96932937 AACCCATATGTGCAAGCCCTAGGTACGAA-CCCATATGTGCGAACCCTGTATCTGCAAACCCTAC
1 AACCCATATGTGCAAGCCCTAGGTAC-AAGCCCAGATGTGCAAACCCTATATCTGCAAACCCTAC
* * *
96933001 GTGTGCGAAACCCAAGGTACG
65 ATGTGCAAAACCCAAGGTACA
*
96933022 AACCCATATGTGCAAACCCTA
1 AACCCATATGTGCAAGCCCTA
96933043 TATGTGTGAA
Statistics
Matches: 88, Mismatches: 16, Indels: 3
0.82 0.15 0.03
Matches are distributed among these distances:
84 5 0.06
85 81 0.92
86 2 0.02
ACGTcount: A:0.31, C:0.29, G:0.21, T:0.20
Consensus pattern (85 bp):
AACCCATATGTGCAAGCCCTAGGTACAAGCCCAGATGTGCAAACCCTATATCTGCAAACCCTACA
TGTGCAAAACCCAAGGTACA
Found at i:96933023 original size:58 final size:56
Alignment explanation
Indices: 96932933--96933041 Score: 157
Period size: 58 Copynumber: 1.9 Consensus size: 56
96932923 AAACCCTAGG
* * *
96932933 TGCAAACCCATATGTGCAAGCCCTAGGTACGAACCCATATGTGCGAACCCTGTATC
1 TGCAAACCCATATGTGCAAACCCAAGGTACGAACCCATATGTGCAAACCCTGTATC
96932989 TGCAAACCC-TACGTGTGCGAAACCCAAGGTACGAACCCATATGTGCAAACCCT
1 TGCAAACCCATA--TGTGC-AAACCCAAGGTACGAACCCATATGTGCAAACCCT
96933042 ATATGTGTGA
Statistics
Matches: 47, Mismatches: 3, Indels: 4
0.87 0.06 0.07
Matches are distributed among these distances:
55 2 0.04
56 9 0.19
57 5 0.11
58 31 0.66
ACGTcount: A:0.30, C:0.31, G:0.19, T:0.19
Consensus pattern (56 bp):
TGCAAACCCATATGTGCAAACCCAAGGTACGAACCCATATGTGCAAACCCTGTATC
Found at i:96934649 original size:46 final size:47
Alignment explanation
Indices: 96934489--96934714 Score: 153
Period size: 46 Copynumber: 4.7 Consensus size: 47
96934479 TTTGTGTGCT
* * * * *
96934489 AGTGTAAGACATGTCTGAGACATGCATCAGCCAC-ATTAT--GAGAGTC
1 AGTGTAAGACATGT-TGGGACATGCATCGGCCTCGA-GATGCGAGAGCC
* * * * * *
96934535 AGTGTAAGACCATATCTAGGACATGGCATTGGCATTGAGA--CGAGAGCT
1 AGTGTAAGA-CATGT-TGGGACAT-GCATCGGCCTCGAGATGCGAGAGCC
* *
96934583 AGAGTAAGACATGTTAGGGACATGCATCGGCCTCGAGATG-TA-AGCC
1 AGTGTAAGACATGTT-GGGACATGCATCGGCCTCGAGATGCGAGAGCC
* * *
96934629 AGTGTAAGAGATGTGTGGGACATGCATCAGCGC-AGAGATGCGAGAGCC
1 AGTGTAAGACATGT-TGGGACATGCATCGGC-CTCGAGATGCGAGAGCC
96934677 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA
1 AGTGTAAGA-CATGT-TGGGACAT-GCATCGGCCTCGA
96934715 TTTTGATTGT
Statistics
Matches: 138, Mismatches: 28, Indels: 24
0.73 0.15 0.13
Matches are distributed among these distances:
46 57 0.41
47 25 0.18
48 33 0.24
49 14 0.10
50 9 0.07
ACGTcount: A:0.30, C:0.19, G:0.31, T:0.21
Consensus pattern (47 bp):
AGTGTAAGACATGTTGGGACATGCATCGGCCTCGAGATGCGAGAGCC
Found at i:96935523 original size:26 final size:26
Alignment explanation
Indices: 96935494--96935546 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
96935484 CAGGTAAACA
*
96935494 CATGGGTATG-TGTCTAGGCCGTGTGT
1 CATGGGTATGTTGCCTA-GCCGTGTGT
*
96935520 CATGGGTGTGTTGCCTAGCCGTGTGT
1 CATGGGTATGTTGCCTAGCCGTGTGT
96935546 C
1 C
96935547 CCCTGTACGT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 19 0.79
27 5 0.21
ACGTcount: A:0.09, C:0.19, G:0.38, T:0.34
Consensus pattern (26 bp):
CATGGGTATGTTGCCTAGCCGTGTGT
Found at i:96939217 original size:15 final size:16
Alignment explanation
Indices: 96939197--96939252 Score: 60
Period size: 17 Copynumber: 3.5 Consensus size: 16
96939187 TAACGAACAC
*
96939197 CCCCATGTAGGTG-AG
1 CCCCATGTAGGTGAAA
**
96939212 CCCCATGTATATGAAA
1 CCCCATGTAGGTGAAA
*
96939228 CCACCATGTAGGTGAAC
1 CC-CCATGTAGGTGAAA
96939245 CCCCATGT
1 CCCCATGT
96939253 GAACCCCTTG
Statistics
Matches: 33, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
15 11 0.33
16 9 0.27
17 13 0.39
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (16 bp):
CCCCATGTAGGTGAAA
Found at i:96939243 original size:17 final size:15
Alignment explanation
Indices: 96939197--96939252 Score: 58
Period size: 15 Copynumber: 3.5 Consensus size: 15
96939187 TAACGAACAC
*
96939197 CCCCATGTAGGTGAG
1 CCCCATGTAGGTGAA
**
96939212 CCCCATGTATATGAAA
1 CCCCATGTAGGTG-AA
96939228 CCACCATGTAGGTGAA
1 CC-CCATGTAGGTGAA
96939244 CCCCCATGT
1 -CCCCATGT
96939253 GAACCCCTTG
Statistics
Matches: 33, Mismatches: 5, Indels: 5
0.77 0.12 0.12
Matches are distributed among these distances:
15 11 0.33
16 11 0.33
17 11 0.33
ACGTcount: A:0.27, C:0.30, G:0.21, T:0.21
Consensus pattern (15 bp):
CCCCATGTAGGTGAA
Found at i:96939317 original size:14 final size:14
Alignment explanation
Indices: 96939300--96939362 Score: 54
Period size: 14 Copynumber: 4.4 Consensus size: 14
96939290 CTTGTATGTG
96939300 AACCCCTATATGCA
1 AACCCCTATATGCA
**
96939314 AACCCCTATATGTG
1 AACCCCTATATGCA
* *
96939328 AACCCCCATATTCGA
1 AACCCCTATATGC-A
* * *
96939343 AGCCCTTACATGCA
1 AACCCCTATATGCA
96939357 AACCCC
1 AACCCC
96939363 AATCTGTGAA
Statistics
Matches: 35, Mismatches: 13, Indels: 2
0.70 0.26 0.04
Matches are distributed among these distances:
14 27 0.77
15 8 0.23
ACGTcount: A:0.32, C:0.38, G:0.10, T:0.21
Consensus pattern (14 bp):
AACCCCTATATGCA
Found at i:96939357 original size:43 final size:44
Alignment explanation
Indices: 96939299--96939407 Score: 132
Period size: 43 Copynumber: 2.5 Consensus size: 44
96939289 TCTTGTATGT
* * *
96939299 GAACCCCTATATGCAAACCCCTATATGTGAAC-CCC-CATATTC
1 GAACCCTTACATGCAAACCCCAATATGTGAACACCCTCATATTC
* ** *
96939341 GAAGCCCTTACATGCAAACCCCAATCTGTGAACACCCTTGTATTT
1 GAA-CCCTTACATGCAAACCCCAATATGTGAACACCCTCATATTC
96939386 GAACCCTTACATGCAAACCCCA
1 GAACCCTTACATGCAAACCCCA
96939408 TTGCACGCGA
Statistics
Matches: 57, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
42 3 0.05
43 25 0.44
44 22 0.39
45 7 0.12
ACGTcount: A:0.31, C:0.35, G:0.11, T:0.23
Consensus pattern (44 bp):
GAACCCTTACATGCAAACCCCAATATGTGAACACCCTCATATTC
Found at i:96939563 original size:14 final size:15
Alignment explanation
Indices: 96939534--96939570 Score: 58
Period size: 14 Copynumber: 2.5 Consensus size: 15
96939524 GGGTTTAGTA
96939534 TGCGAACCCAATATG
1 TGCGAACCCAATATG
*
96939549 TGTGAACCC-ATATG
1 TGCGAACCCAATATG
96939563 TGCGAACC
1 TGCGAACC
96939571 TTGTATGTGC
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
14 12 0.60
15 8 0.40
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.22
Consensus pattern (15 bp):
TGCGAACCCAATATG
Found at i:96941575 original size:30 final size:30
Alignment explanation
Indices: 96941541--96941612 Score: 99
Period size: 30 Copynumber: 2.4 Consensus size: 30
96941531 ACAGAATTCT
** *
96941541 ATGACTGTTGATTGTGTCCAATAGAAGACG
1 ATGACTGCCGATTATGTCCAATAGAAGACG
* *
96941571 ATGACAGCCGATTATGTCCAATAGAAGCCG
1 ATGACTGCCGATTATGTCCAATAGAAGACG
96941601 ATGACTGCCGAT
1 ATGACTGCCGAT
96941613 GTTGGCAACA
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.31, C:0.19, G:0.25, T:0.25
Consensus pattern (30 bp):
ATGACTGCCGATTATGTCCAATAGAAGACG
Found at i:96946222 original size:21 final size:20
Alignment explanation
Indices: 96946173--96946212 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
96946163 GCCATATATA
96946173 TTTTAAAATATTTCTTTATGT
1 TTTTAAAAT-TTTCTTTATGT
*
96946194 TGTGTAAAATTTTCTTTAT
1 T-TTTAAAATTTTCTTTAT
96946213 TCCTTTTAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
21 10 0.59
22 7 0.41
ACGTcount: A:0.28, C:0.05, G:0.07, T:0.60
Consensus pattern (20 bp):
TTTTAAAATTTTCTTTATGT
Found at i:96967882 original size:18 final size:19
Alignment explanation
Indices: 96967848--96967892 Score: 83
Period size: 18 Copynumber: 2.4 Consensus size: 19
96967838 AATCAAATTC
96967848 CCATTTTGGGAAAAAAATA
1 CCATTTTGGGAAAAAAATA
96967867 CCATTTTGGG-AAAAAATA
1 CCATTTTGGGAAAAAAATA
96967885 CCATTTTG
1 CCATTTTG
96967893 CCCTTATACT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 16 0.62
19 10 0.38
ACGTcount: A:0.40, C:0.13, G:0.16, T:0.31
Consensus pattern (19 bp):
CCATTTTGGGAAAAAAATA
Found at i:96971532 original size:47 final size:47
Alignment explanation
Indices: 96971473--96972457 Score: 1936
Period size: 47 Copynumber: 21.0 Consensus size: 47
96971463 GAAATGATAG
96971473 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971520 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971567 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971614 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971661 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971708 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971755 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971802 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971849 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971896 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971943 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96971990 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96972037 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96972084 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96972131 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96972178 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96972225 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96972272 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
96972319 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
*
96972366 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
* *
96972413 TAAGGCCTAATGGCCGATGTG-TGAATGTGAAAGTGTATATATGTG
1 TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTG
96972458 GCAGGGCCGA
Statistics
Matches: 936, Mismatches: 2, Indels: 1
1.00 0.00 0.00
Matches are distributed among these distances:
46 24 0.03
47 912 0.97
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATAGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
Found at i:96972684 original size:37 final size:37
Alignment explanation
Indices: 96972628--96972706 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
96972618 CCGAGCTCTA
* * *
96972628 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
96972665 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
96972702 AAGAC
1 AAGAC
96972707 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:96993261 original size:43 final size:43
Alignment explanation
Indices: 96993158--96993262 Score: 131
Period size: 43 Copynumber: 2.4 Consensus size: 43
96993148 TATGAATACA
* *
96993158 TGTAAGACCATGTCTAGGAAATTGGCATTGTATTGTGATTATG
1 TGTAAGACCATGTCTGGGAAATTGGCATTGTATTATGATTATG
* * *
96993201 TGTAAGACCATGCCTGGGACATTGGCATTGT-TATATGATTTTG
1 TGTAAGACCATGTCTGGGAAATTGGCATTGTAT-TATGATTATG
**
96993244 TGTAAGACCCCGTCTGGGA
1 TGTAAGACCATGTCTGGGA
96993263 TAGCGGCATC
Statistics
Matches: 53, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
42 1 0.02
43 52 0.98
ACGTcount: A:0.25, C:0.14, G:0.27, T:0.34
Consensus pattern (43 bp):
TGTAAGACCATGTCTGGGAAATTGGCATTGTATTATGATTATG
Found at i:97010457 original size:116 final size:117
Alignment explanation
Indices: 97010252--97010481 Score: 417
Period size: 116 Copynumber: 2.0 Consensus size: 117
97010242 TTCCAAATGT
*
97010252 CAGAACCTCTATTGTCCTTGCAACTAAGCGTGACAACCATATATTGGTTAAATCGAAGGCATTCA
1 CAGAACCTCTATTGTCCTTGCAACTAAGCGTGACAACCATATATTGGTTAAATCAAAGGCATTCA
*
97010317 AGCCTTAAAATCCAGAACCCATTGTACAAAAACTT-TTAGGAATTCTTATAC
66 AACCTTAAAATCCAGAACCCATTGTACAAAAACTTGTTAGGAATTCTTATAC
*
97010368 CAGAACCTCTATTGTCCTTGCAATTAAGCGTGACAACCATATATTGGTTAAATCAAAGGCATTCA
1 CAGAACCTCTATTGTCCTTGCAACTAAGCGTGACAACCATATATTGGTTAAATCAAAGGCATTCA
*
97010433 AACCTTAAAATCCAGAACCTATTGTACAAAAACTTGTTAGGAATTCTTA
66 AACCTTAAAATCCAGAACCCATTGTACAAAAACTTGTTAGGAATTCTTA
97010482 CTCTTATTCT
Statistics
Matches: 109, Mismatches: 4, Indels: 1
0.96 0.04 0.01
Matches are distributed among these distances:
116 96 0.88
117 13 0.12
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.29
Consensus pattern (117 bp):
CAGAACCTCTATTGTCCTTGCAACTAAGCGTGACAACCATATATTGGTTAAATCAAAGGCATTCA
AACCTTAAAATCCAGAACCCATTGTACAAAAACTTGTTAGGAATTCTTATAC
Found at i:97017217 original size:49 final size:49
Alignment explanation
Indices: 97017164--97017258 Score: 154
Period size: 49 Copynumber: 1.9 Consensus size: 49
97017154 GTAGCCAAAC
* *
97017164 TATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAAT
1 TATCTGGTACACATAGTAGACTGCACTTAGTACTACACATGCGACCAAT
* *
97017213 TATCTGGTACACGTAGTAGACTGCACTTAGTACTACACATGTGACC
1 TATCTGGTACACATAGTAGACTGCACTTAGTACTACACATGCGACC
97017259 TAGCTACATA
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
49 42 1.00
ACGTcount: A:0.28, C:0.25, G:0.19, T:0.27
Consensus pattern (49 bp):
TATCTGGTACACATAGTAGACTGCACTTAGTACTACACATGCGACCAAT
Found at i:97018099 original size:29 final size:30
Alignment explanation
Indices: 97018066--97018125 Score: 77
Period size: 29 Copynumber: 2.0 Consensus size: 30
97018056 TCCTTAACTC
97018066 AAACTTTGGAAAATTTACAATTTT-CCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
* * * *
97018095 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAATTTACAATTTTGCCCCT
97018125 A
1 A
97018126 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
29 20 0.77
30 6 0.23
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (30 bp):
AAACTTTGGAAAATTTACAATTTTGCCCCT
Found at i:97020859 original size:49 final size:49
Alignment explanation
Indices: 97020792--97021017 Score: 251
Period size: 49 Copynumber: 4.8 Consensus size: 49
97020782 GTAGACAATG
* *
97020792 TTATCTGGTACGCATAGTAGCCTGCACTTAGTAATACACATGCGACCAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
97020841 TTATCTGATACACGTAGTAGCCTGCACTTAGTACT----A----ACC--
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* * * *
97020880 --ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGA-CCAA
*
97020928 GTTATCAGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
1 -TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
* *
97020978 TTATCTGGTACACGTAGTAGCCTACACTTAGTACTACACA
1 TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
97021018 CGTGACCTCA
Statistics
Matches: 149, Mismatches: 14, Indels: 28
0.78 0.07 0.15
Matches are distributed among these distances:
37 32 0.21
41 4 0.03
45 2 0.01
46 1 0.01
49 68 0.46
50 3 0.02
51 39 0.26
ACGTcount: A:0.31, C:0.25, G:0.17, T:0.27
Consensus pattern (49 bp):
TTATCTGGTACACATAGTAGCCTGCACTTAGTACTACACATGCGACCAA
Found at i:97020884 original size:37 final size:37
Alignment explanation
Indices: 97020843--97020913 Score: 133
Period size: 37 Copynumber: 1.9 Consensus size: 37
97020833 GCGACCAATT
*
97020843 ATCTGATACACGTAGTAGCCTGCACTTAGTACTAACC
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTAACC
97020880 ATCTGATACACATAGTAGCCTGCACTTAGTACTA
1 ATCTGATACACATAGTAGCCTGCACTTAGTACTA
97020914 CACACGTGAT
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 33 1.00
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.28
Consensus pattern (37 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTACTAACC
Found at i:97020916 original size:26 final size:26
Alignment explanation
Indices: 97020886--97020969 Score: 68
Period size: 26 Copynumber: 3.3 Consensus size: 26
97020876 AACCATCTGA
97020886 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
* * * * *
97020912 TACACA-CGT-G-ATCGAAGTTA-TCAGG
1 TACACATAGTAGCCT-GCACTTAGT-A-C
97020937 TACACATAGTAGCCTGCACTTAGTAC
1 TACACATAGTAGCCTGCACTTAGTAC
97020963 TACACAT
1 TACACAT
97020970 GCGACCAATT
Statistics
Matches: 41, Mismatches: 10, Indels: 14
0.63 0.15 0.22
Matches are distributed among these distances:
23 2 0.05
24 7 0.17
25 8 0.20
26 15 0.37
27 7 0.17
28 2 0.05
ACGTcount: A:0.32, C:0.25, G:0.17, T:0.26
Consensus pattern (26 bp):
TACACATAGTAGCCTGCACTTAGTAC
Found at i:97020964 original size:88 final size:86
Alignment explanation
Indices: 97020794--97020964 Score: 243
Period size: 86 Copynumber: 2.0 Consensus size: 86
97020784 AGACAATGTT
* * * * *
97020794 ATCTGGTACGCATAGTAGCCTGCACTTAGTAATACACATGCGACCAATTATCTGATACACGTAGT
1 ATCTGATACACATAGTAGCCTGCACTTAGTAATACACACGCGACCAATTATCAGATACACATAGT
97020859 AGCCTGCACTTAGTACTAACC
66 AGCCTGCACTTAGTACTAACC
* * * *
97020880 ATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATCGAAGTTATCAGGTACACATA
1 ATCTGATACACATAGTAGCCTGCACTTAGTAATACACACGCGA-CCAA-TTATCAGATACACATA
97020945 GTAGCCTGCACTTAGTACTA
64 GTAGCCTGCACTTAGTACTA
97020965 CACATGCGAC
Statistics
Matches: 74, Mismatches: 9, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
86 38 0.51
87 3 0.04
88 33 0.45
ACGTcount: A:0.31, C:0.25, G:0.18, T:0.27
Consensus pattern (86 bp):
ATCTGATACACATAGTAGCCTGCACTTAGTAATACACACGCGACCAATTATCAGATACACATAGT
AGCCTGCACTTAGTACTAACC
Found at i:97023790 original size:45 final size:45
Alignment explanation
Indices: 97023723--97023873 Score: 189
Period size: 46 Copynumber: 3.3 Consensus size: 45
97023713 ATAATAAATC
* * * *
97023723 ATAGTTCCTGGTTACCCATTAGGGTT-AACCTACACGAATCAGACA
1 ATAGTGCCTGGTCACCCTTTAGGGTTGAACCTACACGAATC-GATA
*
97023768 ATAGTGCCTGGTCACCCTTTAGGGTTGAACCTACACAAATCGAGTA
1 ATAGTGCCTGGTCACCCTTTAGGGTTGAACCTACACGAATCGA-TA
*
97023814 ATAGTGCTTGGTCA-CCTATTAGGGTTGAACCTACACGAATCGATA
1 ATAGTGCCTGGTCACCCT-TTAGGGTTGAACCTACACGAATCGATA
**
97023859 ATAGTGTTTGGTCAC
1 ATAGTGCCTGGTCAC
97023874 TTGTTAAGGC
Statistics
Matches: 94, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
45 43 0.46
46 51 0.54
ACGTcount: A:0.28, C:0.22, G:0.21, T:0.28
Consensus pattern (45 bp):
ATAGTGCCTGGTCACCCTTTAGGGTTGAACCTACACGAATCGATA
Found at i:97026062 original size:21 final size:21
Alignment explanation
Indices: 97026018--97026063 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
97026008 GTGGGGGTCT
*
97026018 ACACGCCCATGTGGAGGCCAC
1 ACACGCCCATGTGAAGGCCAC
* * *
97026039 ACACGCCCTTGTGAAGTCCTC
1 ACACGCCCATGTGAAGGCCAC
97026060 ACAC
1 ACAC
97026064 ACTCGTGTGG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.24, C:0.39, G:0.22, T:0.15
Consensus pattern (21 bp):
ACACGCCCATGTGAAGGCCAC
Found at i:97031527 original size:65 final size:65
Alignment explanation
Indices: 97031447--97031579 Score: 248
Period size: 65 Copynumber: 2.0 Consensus size: 65
97031437 ACACGCCTGT
* *
97031447 ATGGCCACCCATGTGGTCACGAAACCACTCTAAAACAGCCCAGAAAACATGAATTTCGACATCAA
1 ATGGCCACCCATGTGGTCACAAAACCACTCTAAAACAGCCCAGAAAACATGAATTTCAACATCAA
97031512 ATGGCCACCCATGTGGTCACAAAACCACTCTAAAACAGCCCAGAAAACATGAATTTCAACATCAA
1 ATGGCCACCCATGTGGTCACAAAACCACTCTAAAACAGCCCAGAAAACATGAATTTCAACATCAA
97031577 ATG
1 ATG
97031580 ATCCTTAAAC
Statistics
Matches: 66, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 66 1.00
ACGTcount: A:0.40, C:0.29, G:0.14, T:0.17
Consensus pattern (65 bp):
ATGGCCACCCATGTGGTCACAAAACCACTCTAAAACAGCCCAGAAAACATGAATTTCAACATCAA
Found at i:97034556 original size:25 final size:25
Alignment explanation
Indices: 97034528--97034614 Score: 84
Period size: 25 Copynumber: 3.5 Consensus size: 25
97034518 ATAACCAATT
*
97034528 TGACATATCATTTTCAAAATCATGA
1 TGACATATCATTATCAAAATCATGA
* * * * *
97034553 TGACATTTGATTACCAAGATCATAA
1 TGACATATCATTATCAAAATCATGA
* * *
97034578 TGACATTTTATTATCAAAATCATTA
1 TGACATATCATTATCAAAATCATGA
*
97034603 TAACATATCATT
1 TGACATATCATT
97034615 TTTAGAATCA
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
25 49 1.00
ACGTcount: A:0.40, C:0.15, G:0.07, T:0.38
Consensus pattern (25 bp):
TGACATATCATTATCAAAATCATGA
Found at i:97036266 original size:46 final size:46
Alignment explanation
Indices: 97036199--97036291 Score: 177
Period size: 46 Copynumber: 2.0 Consensus size: 46
97036189 TTATTACAAT
97036199 TGACCTATGACACTTACAGAACACTATACTTCAGTTCACTATATTC
1 TGACCTATGACACTTACAGAACACTATACTTCAGTTCACTATATTC
*
97036245 TGACCTATGACACTTACAGAACACTATACTTCATTTCACTATATTC
1 TGACCTATGACACTTACAGAACACTATACTTCAGTTCACTATATTC
97036291 T
1 T
97036292 ATCTGTTTGC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.32, C:0.26, G:0.08, T:0.34
Consensus pattern (46 bp):
TGACCTATGACACTTACAGAACACTATACTTCAGTTCACTATATTC
Found at i:97040253 original size:26 final size:26
Alignment explanation
Indices: 97040217--97040300 Score: 141
Period size: 26 Copynumber: 3.2 Consensus size: 26
97040207 TGATACAAAT
97040217 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
97040243 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* * *
97040269 TGATAATGGGTTCGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
97040295 TGATAA
1 TGATAA
97040301 GAATTTCATG
Statistics
Matches: 55, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 55 1.00
ACGTcount: A:0.33, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:97041776 original size:28 final size:26
Alignment explanation
Indices: 97041734--97041808 Score: 87
Period size: 26 Copynumber: 2.8 Consensus size: 26
97041724 AAAAGTAGCT
* *
97041734 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTGTTATACCCCTA-G-ATGGA
* *
97041762 AAATTACTGTTATACCCCTAGGTGTA
1 AAATTACTGTTATACCCCTAGATGGA
*
97041788 AAATTACCGTTATACCCCTAG
1 AAATTACTGTTATACCCCTAG
97041809 GGTTAATTTT
Statistics
Matches: 42, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.35, C:0.21, G:0.12, T:0.32
Consensus pattern (26 bp):
AAATTACTGTTATACCCCTAGATGGA
Found at i:97041955 original size:27 final size:27
Alignment explanation
Indices: 97041912--97042008 Score: 149
Period size: 27 Copynumber: 3.6 Consensus size: 27
97041902 GAGGAAGTGT
*
97041912 TCTGGTGGCTATGCCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
97041939 TCTGGTGGCTCTACCACAAATATCTGA
1 TCTGGTGGCTCTGCCACAAATATCTGA
* *
97041966 TCTGGTGGCTCTGCCACATATATCTGT
1 TCTGGTGGCTCTGCCACAAATATCTGA
*
97041993 TCTGGTGGCCCTGCCA
1 TCTGGTGGCTCTGCCA
97042009 TGATTATCTG
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 64 1.00
ACGTcount: A:0.20, C:0.27, G:0.23, T:0.31
Consensus pattern (27 bp):
TCTGGTGGCTCTGCCACAAATATCTGA
Found at i:97041997 original size:54 final size:55
Alignment explanation
Indices: 97041912--97042051 Score: 167
Period size: 54 Copynumber: 2.6 Consensus size: 55
97041902 GAGGAAGTGT
* * * *
97041912 TCTGGTGGCTATGCCACAAATATCTGATCTGGTGGCTCTACCACAAATATCTG-A
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTACCACAAATATCTGTA
* ** *
97041966 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTGCCATGATTATCTGTA
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTACCACAAATATCTGTA
* * *
97042021 TCTAGTGACTCTGTCACAT-TATCTGTTCTGG
1 TCTGGTGGCTCTGCCACATATATCTGTTCTGG
97042052 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 11, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
54 57 0.77
55 17 0.23
ACGTcount: A:0.19, C:0.24, G:0.21, T:0.35
Consensus pattern (55 bp):
TCTGGTGGCTCTGCCACATATATCTGTTCTGGTGGCCCTACCACAAATATCTGTA
Found at i:97042016 original size:27 final size:26
Alignment explanation
Indices: 97041909--97042051 Score: 124
Period size: 27 Copynumber: 5.3 Consensus size: 26
97041899 ATGGAGGAAG
* *
97041909 TGTTCTGGTGGCTATGCCACAAATATC
1 TGTTCTGGTGGCTCTGCCA-AATTATC
* * *
97041936 TGATCTGGTGGCTCTACCACAAATATC
1 TGTTCTGGTGGCTCTGCCA-AATTATC
* *
97041963 TGATCTGGTGGCTCTGCCACATATATC
1 TGTTCTGGTGGCTCTGCCAAAT-TATC
* *
97041990 TGTTCTGGTGGCCCTGCCATGATTATC
1 TGTTCTGGTGGCTCTGCCA-AATTATC
* * * *
97042017 TGTATCTAGTGACTCTGTCACATTATC
1 TGT-TCTGGTGGCTCTGCCAAATTATC
97042044 TGTTCTGG
1 TGTTCTGG
97042052 CAGCCATGCT
Statistics
Matches: 98, Mismatches: 15, Indels: 7
0.82 0.12 0.06
Matches are distributed among these distances:
26 5 0.05
27 79 0.81
28 14 0.14
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.36
Consensus pattern (26 bp):
TGTTCTGGTGGCTCTGCCAAATTATC
Found at i:97044646 original size:18 final size:18
Alignment explanation
Indices: 97044623--97044657 Score: 70
Period size: 18 Copynumber: 1.9 Consensus size: 18
97044613 GGATGGGAAA
97044623 GAAAAAACTAAGTTAGGG
1 GAAAAAACTAAGTTAGGG
97044641 GAAAAAACTAAGTTAGG
1 GAAAAAACTAAGTTAGG
97044658 AATTTAGGGA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.51, C:0.06, G:0.26, T:0.17
Consensus pattern (18 bp):
GAAAAAACTAAGTTAGGG
Found at i:97052375 original size:18 final size:18
Alignment explanation
Indices: 97052349--97052388 Score: 71
Period size: 18 Copynumber: 2.2 Consensus size: 18
97052339 ACAAATCTGA
97052349 GATAGAAATATTCCTCTC
1 GATAGAAATATTCCTCTC
*
97052367 GATATAAATATTCCTCTC
1 GATAGAAATATTCCTCTC
97052385 GATA
1 GATA
97052389 AAGTTTTAAG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.35, C:0.20, G:0.10, T:0.35
Consensus pattern (18 bp):
GATAGAAATATTCCTCTC
Found at i:97053772 original size:48 final size:48
Alignment explanation
Indices: 97053720--97053839 Score: 118
Period size: 48 Copynumber: 2.5 Consensus size: 48
97053710 CCCATGTAAT
* * * * *
97053720 ACCATATCTAGGATATGGCATTGGCA-T-CGATGTGATTTCCCATATGAG
1 ACCATATCTAGGATATGGCATTGACATTAAGATGAGACTT--CATATAAG
* * * * *
97053768 ACCATGTCTGGGACATGGCATCGACATTAATATGAGACTTCATATAAG
1 ACCATATCTAGGATATGGCATTGACATTAAGATGAGACTTCATATAAG
97053816 ACCATATCTAGGATATGGCATTGA
1 ACCATATCTAGGATATGGCATTGA
97053840 TATGTGGCAT
Statistics
Matches: 56, Mismatches: 14, Indels: 4
0.76 0.19 0.05
Matches are distributed among these distances:
48 48 0.86
49 1 0.02
50 7 0.12
ACGTcount: A:0.31, C:0.18, G:0.22, T:0.29
Consensus pattern (48 bp):
ACCATATCTAGGATATGGCATTGACATTAAGATGAGACTTCATATAAG
Found at i:97058007 original size:20 final size:20
Alignment explanation
Indices: 97057982--97058028 Score: 69
Period size: 19 Copynumber: 2.4 Consensus size: 20
97057972 TTAAAACCCA
* *
97057982 AGACCCAAATAGCTAAATCT
1 AGACCCAAATAACTAAACCT
97058002 AGACCC-AATAACTAAACCT
1 AGACCCAAATAACTAAACCT
97058021 AGACCCAA
1 AGACCCAA
97058029 CCCCAAAATG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 17 0.71
20 7 0.29
ACGTcount: A:0.47, C:0.30, G:0.09, T:0.15
Consensus pattern (20 bp):
AGACCCAAATAACTAAACCT
Found at i:97060916 original size:129 final size:131
Alignment explanation
Indices: 97060516--97060987 Score: 373
Period size: 131 Copynumber: 3.6 Consensus size: 131
97060506 ATTAAGAATT
* ** * ** * * *
97060516 CTTTAAAACGAAGGCGATATTCGATACTTGGCAATTCGTGGAATCGTGCCCTAAT-GTGTTGGGT
1 CTTTAAAACAAAGGAAATACTCGATGTTTGGCAATTTG-GGAATCGTACCCT-ATCGTGCTGGGT
** * ** * * * * * *
97060580 TGCAATTTCTCGCTTGCTCAAAGTAATCGAAGGTCCCTTTAGAATTTCACCCACGTCTTTTAAAA
64 TGCAATTTCTCATTTGCTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACGTCTTCTAAAA
97060645 ATC
129 ATC
* * ** * * * *
97060648 CCTT-AAACGAAGGTGAT-GTGCGATATTTGGCAATTTGCGGAATCGTATCCTAACGTGCTGGGT
1 CTTTAAAACAAAGGAAATACT-CGATGTTTGGCAATTTG-GGAATCGTACCCTATCGTGCTGGGT
* * * *
97060711 TGCAATTTCTCGTTTGCTTAAAATAATCAAATATCCCTTCAAAATTTCACTCATGTCTTCTAAAA
64 TGCAATTTCTCATTTGCTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACGTCTTCTAAAA
97060776 ATC
129 ATC
* * * * * *
97060779 CTTTAAAACGAAGGTAATACTCGGTGTTTGACAATTTGAGAATCGTGCCCTATCGTGCTGGGTTG
1 CTTTAAAACAAAGGAAATACTCGATGTTTGGCAATTTGGGAATCGTACCCTATCGTGCTGGGTTG
* * * ** *
97060844 CACTTT-TCATTTG-TTCAAAACAATCGAAGATTCCTTCGGAATTT-ACTCACGTTTTCTAAAAA
66 CAATTTCTCATTTGCTT-AAAACAATCAAAGATCCCTTCAAAATTTCACTCACGTCTTCTAAAAA
97060906 -C
130 TC
* * * * *
97060907 TCTTTAAAACAAAGGAAATACTCGATGTTTGGCAATTCGGGGAGTAGTTCCCTATCGTGTTGGGT
1 -CTTTAAAACAAAGGAAATACTCGATGTTTGGCAATT-TGGGAATCGTACCCTATCGTGCTGGGT
* *
97060972 TGCAATCTCCCATTTG
64 TGCAATTTCTCATTTG
97060988 TACCAAATAA
Statistics
Matches: 278, Mismatches: 54, Indels: 17
0.80 0.15 0.05
Matches are distributed among these distances:
128 1 0.00
129 50 0.18
130 57 0.21
131 140 0.50
132 29 0.10
133 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (131 bp):
CTTTAAAACAAAGGAAATACTCGATGTTTGGCAATTTGGGAATCGTACCCTATCGTGCTGGGTTG
CAATTTCTCATTTGCTTAAAACAATCAAAGATCCCTTCAAAATTTCACTCACGTCTTCTAAAAAT
C
Found at i:97067453 original size:26 final size:26
Alignment explanation
Indices: 97067408--97067554 Score: 177
Period size: 26 Copynumber: 5.7 Consensus size: 26
97067398 TTGTAGCTTC
* *
97067408 AAATTATTTTTTATATTATTTATTTT
1 AAATTGTTTTATATATTATTTATTTT
* *
97067434 AAACTGTTTTATATACTATTTATTTT
1 AAATTGTTTTATATATTATTTATTTT
* * ** *
97067460 AAATCGTTTTATATACTGGTTACTTT
1 AAATTGTTTTATATATTATTTATTTT
* * *
97067486 AAATTGTCTTATATGTTATTTATTTC
1 AAATTGTTTTATATATTATTTATTTT
97067512 AAATTGTTTTATATATTATTTATTTT
1 AAATTGTTTTATATATTATTTATTTT
*
97067538 AAATTGTTTTTTATATT
1 AAATTGTTTTATATATT
97067555 TGATTTGATT
Statistics
Matches: 100, Mismatches: 21, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
26 100 1.00
ACGTcount: A:0.29, C:0.05, G:0.05, T:0.61
Consensus pattern (26 bp):
AAATTGTTTTATATATTATTTATTTT
Found at i:97072241 original size:97 final size:97
Alignment explanation
Indices: 97072074--97072269 Score: 320
Period size: 97 Copynumber: 2.0 Consensus size: 97
97072064 AATGCTCAGA
* *
97072074 GCCTTAATTTTCCTAAGCAACGAGGCTAACTCCTGCCCCCGATCTGACTCCAACTCATACTTCAT
1 GCCTTAATTTTCCTAAACAACGAGGCTAACTCCTGCCCCCGATCTGACTCCAACTCATACTTCAC
* *
97072139 GCTCAGTATGTCTGCTTGTACCACTAAAGCTT
66 ACTCAGTATGTCCGCTTGTACCACTAAAGCTT
* * *
97072171 GCCTTAATTTTCCTAAACAATGAGGCTAGCTCCTGCCCCCGATCTGACTCCAACTCGTACTTCAC
1 GCCTTAATTTTCCTAAACAACGAGGCTAACTCCTGCCCCCGATCTGACTCCAACTCATACTTCAC
*
97072236 ACTCAGTATGTCCGCTTGTACCGCTAAAGCTT
66 ACTCAGTATGTCCGCTTGTACCACTAAAGCTT
97072268 GC
1 GC
97072270 AAGTAATCGG
Statistics
Matches: 91, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
97 91 1.00
ACGTcount: A:0.23, C:0.33, G:0.15, T:0.29
Consensus pattern (97 bp):
GCCTTAATTTTCCTAAACAACGAGGCTAACTCCTGCCCCCGATCTGACTCCAACTCATACTTCAC
ACTCAGTATGTCCGCTTGTACCACTAAAGCTT
Found at i:97077040 original size:52 final size:52
Alignment explanation
Indices: 97076966--97077073 Score: 155
Period size: 52 Copynumber: 2.1 Consensus size: 52
97076956 AGCAATGGTG
* *
97076966 AAATGGAGAAATAGGAAACATTTGAAAATGATTATGGTTTTCTTCAAAAATGA
1 AAATAGAGAAATAGGAAACATTTGAAAATGAATATGGTTTTC-TCAAAAATGA
* * *
97077019 AAATAGAGAAAT-GGAATCATTTGAAAATGAATGTGGTTTTCTCCAAAATGA
1 AAATAGAGAAATAGGAAACATTTGAAAATGAATATGGTTTTCTCAAAAATGA
97077070 AAAT
1 AAAT
97077074 GACCTAAAAA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
51 13 0.26
52 26 0.52
53 11 0.22
ACGTcount: A:0.45, C:0.06, G:0.19, T:0.30
Consensus pattern (52 bp):
AAATAGAGAAATAGGAAACATTTGAAAATGAATATGGTTTTCTCAAAAATGA
Found at i:97078889 original size:108 final size:108
Alignment explanation
Indices: 97078752--97078968 Score: 425
Period size: 108 Copynumber: 2.0 Consensus size: 108
97078742 CATTGGGAGC
97078752 GATTCGAGACTAAACCGAGAACATTAGAAAATTTCACAACACTTAGAAAATTTTTCATGTTTTTA
1 GATTCGAGACTAAACCGAGAACATTAGAAAATTTCACAACACTTAGAAAATTTTTCATGTTTTTA
97078817 AGAGTCATATGCCCGAGTGGCTTGGACGCGCCCGTATGGGCAA
66 AGAGTCATATGCCCGAGTGGCTTGGACGCGCCCGTATGGGCAA
97078860 GATTCGAGACTAAACCGAGAACATTAGAAAATTTCACAACACTTAGAAAATTTTTCATGTTTTTA
1 GATTCGAGACTAAACCGAGAACATTAGAAAATTTCACAACACTTAGAAAATTTTTCATGTTTTTA
*
97078925 AGAGTCATATGCCCGTGTGGCTTGGACGCGCCCGTATGGGCAA
66 AGAGTCATATGCCCGAGTGGCTTGGACGCGCCCGTATGGGCAA
97078968 G
1 G
97078969 CCGCGTGGTC
Statistics
Matches: 108, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
108 108 1.00
ACGTcount: A:0.32, C:0.19, G:0.22, T:0.27
Consensus pattern (108 bp):
GATTCGAGACTAAACCGAGAACATTAGAAAATTTCACAACACTTAGAAAATTTTTCATGTTTTTA
AGAGTCATATGCCCGAGTGGCTTGGACGCGCCCGTATGGGCAA
Found at i:97079970 original size:88 final size:88
Alignment explanation
Indices: 97079811--97079981 Score: 297
Period size: 88 Copynumber: 1.9 Consensus size: 88
97079801 ACAAACCTCC
*
97079811 CATTTTACATAAAGTGGCCAGCCATCATGTTGTTGTAGACATTATGAGCACTTGATATCCATAAT
1 CATTTTACATAAAGTGGCCAGCCATCATGTTGTTGTAGACAATATGAGCACTTGATATCCATAAT
97079876 CCATGGTACAAATTGATAATGGG
66 CCATGGTACAAATTGATAATGGG
* *
97079899 CATTTTACATGAAGTGGCCAGCCATCATGTTGTTGTAGACAATATGAGCACTTGATATCCCTAAT
1 CATTTTACATAAAGTGGCCAGCCATCATGTTGTTGTAGACAATATGAGCACTTGATATCCATAAT
**
97079964 TTATGGTACAAATTGATA
66 CCATGGTACAAATTGATA
97079982 CAAATTGATA
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
88 78 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (88 bp):
CATTTTACATAAAGTGGCCAGCCATCATGTTGTTGTAGACAATATGAGCACTTGATATCCATAAT
CCATGGTACAAATTGATAATGGG
Found at i:97080016 original size:26 final size:26
Alignment explanation
Indices: 97079987--97080068 Score: 128
Period size: 26 Copynumber: 3.2 Consensus size: 26
97079977 TGATACAAAT
*
97079987 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
* *
97080013 TGATAATGGATTAGGTAAATATTTCA
1 TGATAATGGATTAGGTAAATGTTCCA
*
97080039 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGATTAGGTAAATGTTCCA
97080065 TGAT
1 TGAT
97080069 GGGCATTTCA
Statistics
Matches: 50, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
26 50 1.00
ACGTcount: A:0.33, C:0.06, G:0.23, T:0.38
Consensus pattern (26 bp):
TGATAATGGATTAGGTAAATGTTCCA
Found at i:97084019 original size:40 final size:39
Alignment explanation
Indices: 97083921--97084183 Score: 278
Period size: 40 Copynumber: 6.6 Consensus size: 39
97083911 TCCTCGTTCA
* * * *
97083921 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* *
97083960 AATGCCTTCGGGACATAACCCGGATTTAATAACTCGCAC
1 AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
97083999 GAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
*
97084039 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
* * *
97084079 AAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCAC
1 -AATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCAC
** * * * *
97084119 AAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
1 -AATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCAC
* *
97084160 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97084184 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 21, Indels: 11
0.86 0.09 0.05
Matches are distributed among these distances:
39 40 0.20
40 145 0.74
41 12 0.06
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (39 bp):
AATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCAC
Found at i:97084143 original size:120 final size:119
Alignment explanation
Indices: 97083921--97084183 Score: 307
Period size: 120 Copynumber: 2.2 Consensus size: 119
97083911 TCCTCGTTCA
* * *
97083921 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATGCCTTCGGGACATAACCCGGATT
1 AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
* * *
97083986 TAATAACTCGCACGAATGCCTTCGGGACTTAACCCGGATTTAATAAC-TCGCAC
66 TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
* * * * *
97084039 GAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGA
1 -AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACAC-AAGGCCTTCGGGACATAACCCGG-
* * ** * *
97084104 ATTT-GTATCTCGCACAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC
63 ATTTAATAACTCGCACAAATGCCTTCGGGA-CTTAACCCGGATATAATAACTTAGCAC
*
97084160 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
97084184 CAGCATTCAA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 37 0.31
120 75 0.62
121 9 0.07
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.25
Consensus pattern (119 bp):
AATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCACACAAGGCCTTCGGGACATAACCCGGATT
TAATAACTCGCACAAATGCCTTCGGGACTTAACCCGGATATAATAACTTAGCAC
Found at i:97084192 original size:41 final size:41
Alignment explanation
Indices: 97084115--97084192 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
97084105 TTTGTATCTC
* * *
97084115 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
97084156 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
97084193 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:97092006 original size:40 final size:40
Alignment explanation
Indices: 97091908--97092170 Score: 298
Period size: 40 Copynumber: 6.6 Consensus size: 40
97091898 TCCTCGTTCA
* * * *
97091908 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
*
97091947 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* *
97091987 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* *
97092027 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * *
97092067 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
* * * * * *
97092107 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAACTCA-CACG
* *
97092147 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
97092171 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 21, Indels: 7
0.88 0.09 0.03
Matches are distributed among these distances:
39 39 0.20
40 154 0.77
41 6 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCACACG
Found at i:97094499 original size:42 final size:42
Alignment explanation
Indices: 97094440--97094532 Score: 150
Period size: 42 Copynumber: 2.2 Consensus size: 42
97094430 GGATCTCGTA
*
97094440 GTCTTACACGAAATCTCATATCGATACCATATCCCAGATATG
1 GTCTTACACGAAATCTCATATCGACACCATATCCCAGATATG
* * *
97094482 GTCTTACATGAAGTCTCATATTGACACCATATCCCAGATATG
1 GTCTTACACGAAATCTCATATCGACACCATATCCCAGATATG
97094524 GTCTTACAC
1 GTCTTACAC
97094533 AGTCTCAAAA
Statistics
Matches: 46, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
42 46 1.00
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (42 bp):
GTCTTACACGAAATCTCATATCGACACCATATCCCAGATATG
Found at i:97095613 original size:11 final size:11
Alignment explanation
Indices: 97095587--97095625 Score: 51
Period size: 11 Copynumber: 3.4 Consensus size: 11
97095577 TCAAACATCA
97095587 AAATTTTCAAACG
1 AAATTTTC--ACG
97095600 AAATTTTCACG
1 AAATTTTCACG
*
97095611 AAATTTTCACA
1 AAATTTTCACG
97095622 AAAT
1 AAAT
97095626 CATTCCATAA
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
11 17 0.68
13 8 0.32
ACGTcount: A:0.46, C:0.15, G:0.05, T:0.33
Consensus pattern (11 bp):
AAATTTTCACG
Found at i:97096224 original size:23 final size:22
Alignment explanation
Indices: 97096198--97096243 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
97096188 AAATTTTGAT
97096198 TTCTCTCAAAATTTTGAGTCTTG
1 TTCTCTCAAAA-TTTGAGTCTTG
** *
97096221 TTCTCTTTAAATTTGAGTTTTG
1 TTCTCTCAAAATTTGAGTCTTG
97096243 T
1 T
97096244 AAATATTAGT
Statistics
Matches: 20, Mismatches: 3, Indels: 1
0.83 0.12 0.04
Matches are distributed among these distances:
22 11 0.55
23 9 0.45
ACGTcount: A:0.20, C:0.13, G:0.13, T:0.54
Consensus pattern (22 bp):
TTCTCTCAAAATTTGAGTCTTG
Found at i:97101261 original size:49 final size:49
Alignment explanation
Indices: 97101205--97101327 Score: 155
Period size: 47 Copynumber: 2.6 Consensus size: 49
97101195 TATTTGAATA
* * *
97101205 AATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATG
* * *
97101254 AATGTGAAAGTG--TATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATG
*
97101301 GATGTGAAAGTGTATA-A-ATGTGATAAG
1 AATGTGAAAGTGTATATATATGTGATAAG
97101328 TCCCGAAGGG
Statistics
Matches: 63, Mismatches: 9, Indels: 6
0.81 0.12 0.08
Matches are distributed among these distances:
47 48 0.76
48 1 0.02
49 14 0.22
ACGTcount: A:0.33, C:0.08, G:0.31, T:0.28
Consensus pattern (49 bp):
AATGTGAAAGTGTATATATATGTGATAAGGCCGAATGGCCAACGTGATG
Found at i:97105722 original size:60 final size:61
Alignment explanation
Indices: 97105622--97105770 Score: 153
Period size: 60 Copynumber: 2.5 Consensus size: 61
97105612 AATTGTGTTA
* * * *
97105622 ATATGGGCAAGGCCCAATATA-TCTCGA-CTTGTAATAGGGCTACAGCCCAGATTGATACTG
1 ATATGGGCTAGGCCCAGTATACTCT-GATATTGTAATAGGGCTACAGCCCAGATTAATACTG
* ** * *
97105682 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAA-GGGGCTATGGCCCTGATTAATATTG
1 ATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACAGCCCAGATTAATACTG
*
97105742 ATATGGGCTAAGGCTCAGT-TAACTCTGAT
1 ATATGGGCT-AGGCCCAGTAT-ACTCTGAT
97105771 TTCTGAATAG
Statistics
Matches: 75, Mismatches: 10, Indels: 7
0.82 0.11 0.08
Matches are distributed among these distances:
60 50 0.67
61 25 0.33
ACGTcount: A:0.28, C:0.19, G:0.25, T:0.29
Consensus pattern (61 bp):
ATATGGGCTAGGCCCAGTATACTCTGATATTGTAATAGGGCTACAGCCCAGATTAATACTG
Found at i:97114910 original size:20 final size:20
Alignment explanation
Indices: 97114885--97114933 Score: 62
Period size: 20 Copynumber: 2.4 Consensus size: 20
97114875 ACTTAAGTAC
97114885 TAAATTAACAAAAATTAAAT
1 TAAATTAACAAAAATTAAAT
* * *
97114905 TAAATTACCAAATATTATAT
1 TAAATTAACAAAAATTAAAT
97114925 TAAAATTAA
1 T-AAATTAA
97114934 AATTATATAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
20 18 0.75
21 6 0.25
ACGTcount: A:0.59, C:0.06, G:0.00, T:0.35
Consensus pattern (20 bp):
TAAATTAACAAAAATTAAAT
Found at i:97118060 original size:6 final size:6
Alignment explanation
Indices: 97118035--97118083 Score: 71
Period size: 6 Copynumber: 7.8 Consensus size: 6
97118025 TTTCTCCATC
*
97118035 TCTTCA CTCTATCT TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTC
1 TCTTCA -TCT-TCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTCA TCTTC
97118084 TTCTCCTTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
6 31 0.79
7 6 0.15
8 2 0.05
ACGTcount: A:0.14, C:0.35, G:0.00, T:0.51
Consensus pattern (6 bp):
TCTTCA
Found at i:97118065 original size:15 final size:15
Alignment explanation
Indices: 97118045--97118116 Score: 65
Period size: 15 Copynumber: 4.6 Consensus size: 15
97118035 TCTTCACTCT
97118045 ATCTTCTTCATCTTC
1 ATCTTCTTCATCTTC
97118060 ATCTTCATCTTCATCTTC
1 ATC-T--TCTTCATCTTC
*
97118078 ATCTTCTTC-TCCTTT
1 ATCTTCTTCAT-CTTC
* *
97118093 ATCTTCTGCAACTTC
1 ATCTTCTTCATCTTC
*
97118108 ATCTCCTTC
1 ATCTTCTTC
97118117 GTATGTCACT
Statistics
Matches: 46, Mismatches: 6, Indels: 10
0.74 0.10 0.16
Matches are distributed among these distances:
14 1 0.02
15 29 0.63
16 1 0.02
17 1 0.02
18 14 0.30
ACGTcount: A:0.14, C:0.35, G:0.01, T:0.50
Consensus pattern (15 bp):
ATCTTCTTCATCTTC
Found at i:97123508 original size:17 final size:18
Alignment explanation
Indices: 97123486--97123528 Score: 61
Period size: 17 Copynumber: 2.4 Consensus size: 18
97123476 AAACCTTCCC
*
97123486 ACCTTTTATCTT-TTTTA
1 ACCTTTTATCTTCTTTAA
*
97123503 ACCTTTCATCTTCTTTAA
1 ACCTTTTATCTTCTTTAA
97123521 ACCTTTTA
1 ACCTTTTA
97123529 ATTTATTTAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 11 0.50
18 11 0.50
ACGTcount: A:0.21, C:0.23, G:0.00, T:0.56
Consensus pattern (18 bp):
ACCTTTTATCTTCTTTAA
Found at i:97124703 original size:24 final size:24
Alignment explanation
Indices: 97124671--97124716 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
97124661 CACTAGTAGT
97124671 CATGGTCGAGGACATGGCCGTGGC
1 CATGGTCGAGGACATGGCCGTGGC
97124695 CATGGTCGAGGACATGGCCGTG
1 CATGGTCGAGGACATGGCCGTG
97124717 AATGAGAACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.17, C:0.24, G:0.41, T:0.17
Consensus pattern (24 bp):
CATGGTCGAGGACATGGCCGTGGC
Found at i:97138602 original size:9 final size:9
Alignment explanation
Indices: 97138582--97138630 Score: 55
Period size: 9 Copynumber: 5.4 Consensus size: 9
97138572 TTTGGTTAAA
*
97138582 AATTAACTG
1 AATTAACCG
*
97138591 AATTACCCG
1 AATTAACCG
*
97138600 AATTAACTG
1 AATTAACCG
97138609 AATT-ACCTG
1 AATTAACC-G
97138618 AATTAACCG
1 AATTAACCG
97138627 AATT
1 AATT
97138631 GAATCAATAT
Statistics
Matches: 33, Mismatches: 5, Indels: 4
0.79 0.12 0.10
Matches are distributed among these distances:
8 2 0.06
9 28 0.85
10 3 0.09
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (9 bp):
AATTAACCG
Found at i:97138605 original size:18 final size:18
Alignment explanation
Indices: 97138582--97138630 Score: 80
Period size: 18 Copynumber: 2.7 Consensus size: 18
97138572 TTTGGTTAAA
97138582 AATTAACTGAATTACCCG
1 AATTAACTGAATTACCCG
*
97138600 AATTAACTGAATTACCTG
1 AATTAACTGAATTACCCG
*
97138618 AATTAACCGAATT
1 AATTAACTGAATT
97138631 GAATCAATAT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 29 1.00
ACGTcount: A:0.41, C:0.18, G:0.10, T:0.31
Consensus pattern (18 bp):
AATTAACTGAATTACCCG
Found at i:97138680 original size:20 final size:20
Alignment explanation
Indices: 97138652--97138755 Score: 85
Period size: 20 Copynumber: 5.5 Consensus size: 20
97138642 TAATTAAAAA
97138652 CATTACATAAGTATTTGAAT
1 CATTACATAAGTATTTGAAT
* ***
97138672 CACTACATAA-T-TAAAAAT
1 CATTACATAAGTATTTGAAT
97138690 -ATTACATAAGTATTTGAAT
1 CATTACATAAGTATTTGAAT
** *
97138709 CATTACAT-A--ATTAAAAA
1 CATTACATAAGTATTTGAAT
*
97138726 CATTACATAAGTCTTTGAAT
1 CATTACATAAGTATTTGAAT
*
97138746 CACTACATAA
1 CATTACATAA
97138756 TTAAAAACAT
Statistics
Matches: 62, Mismatches: 16, Indels: 12
0.69 0.18 0.13
Matches are distributed among these distances:
17 21 0.34
18 6 0.10
19 6 0.10
20 29 0.47
ACGTcount: A:0.46, C:0.13, G:0.06, T:0.35
Consensus pattern (20 bp):
CATTACATAAGTATTTGAAT
Found at i:97138697 original size:17 final size:17
Alignment explanation
Indices: 97138675--97138735 Score: 59
Period size: 17 Copynumber: 3.4 Consensus size: 17
97138665 TTTGAATCAC
97138675 TACATAATTAAAAATAT
1 TACATAATTAAAAATAT
***
97138692 TACATAAGTATTTGAATCAT
1 TACATAA-T-TAAAAAT-AT
*
97138712 TACATAATTAAAAACAT
1 TACATAATTAAAAATAT
97138729 TACATAA
1 TACATAA
97138736 GTCTTTGAAT
Statistics
Matches: 34, Mismatches: 7, Indels: 6
0.72 0.15 0.13
Matches are distributed among these distances:
17 16 0.47
18 4 0.12
19 5 0.15
20 9 0.26
ACGTcount: A:0.52, C:0.10, G:0.03, T:0.34
Consensus pattern (17 bp):
TACATAATTAAAAATAT
Found at i:97138777 original size:37 final size:37
Alignment explanation
Indices: 97138629--97138774 Score: 238
Period size: 37 Copynumber: 3.9 Consensus size: 37
97138619 ATTAACCGAA
* *
97138629 TTGAATCAATATATAATTAAAAACATTACATAAGTAT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTAT
*
97138666 TTGAATCACTACATAATTAAAAATATTACATAAGTAT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTAT
* *
97138703 TTGAATCATTACATAATTAAAAACATTACATAAGTCT
1 TTGAATCACTACATAATTAAAAACATTACATAAGTAT
*
97138740 TTGAATCACTACATAATTAAAAACATGACATAAGT
1 TTGAATCACTACATAATTAAAAACATTACATAAGT
97138775 CTTGAAATTA
Statistics
Matches: 101, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
37 101 1.00
ACGTcount: A:0.49, C:0.12, G:0.06, T:0.34
Consensus pattern (37 bp):
TTGAATCACTACATAATTAAAAACATTACATAAGTAT
Found at i:97138791 original size:74 final size:74
Alignment explanation
Indices: 97138641--97138792 Score: 225
Period size: 74 Copynumber: 2.1 Consensus size: 74
97138631 GAATCAATAT
* * *
97138641 ATAATTAAAAACATTACATAAGTATTTGAATCACTACATAATTAAAAATATTACATAAGTATTTG
1 ATAATTAAAAACATTACATAAGTATTTGAATCACTACATAATTAAAAACATGACATAAGTACTTG
**
97138706 AATCATTAC
66 AATCACCAC
*
97138715 ATAATTAAAAACATTACATAAGTCTTTGAATCACTACATAATTAAAAACATGACATAAGT-CTTG
1 ATAATTAAAAACATTACATAAGTATTTGAATCACTACATAATTAAAAACATGACATAAGTACTTG
*
97138779 AAATTACCAC
66 -AATCACCAC
97138789 ATAA
1 ATAA
97138793 ATGAAATGTA
Statistics
Matches: 70, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
73 3 0.04
74 67 0.96
ACGTcount: A:0.49, C:0.13, G:0.06, T:0.32
Consensus pattern (74 bp):
ATAATTAAAAACATTACATAAGTATTTGAATCACTACATAATTAAAAACATGACATAAGTACTTG
AATCACCAC
Found at i:97139874 original size:38 final size:38
Alignment explanation
Indices: 97139824--97139922 Score: 94
Period size: 40 Copynumber: 2.6 Consensus size: 38
97139814 CCATCTCCGT
97139824 CCAA-CCTAACACACCATGTGGGGATGA-AATCAACCCAC
1 CCAACCCT-ACACACCATGTGGGGAT-ATAATCAACCCAC
* * * *
97139862 CCAGCCCTACACACCAAGTATGGGGATATAATCGACCCAT
1 CCAACCCTACACACC-A-TGTGGGGATATAATCAACCCAC
* *
97139902 CCAACCCTATACACCAAGTGG
1 CCAACCCTACACACCATGTGG
97139923 TACCATATAC
Statistics
Matches: 49, Mismatches: 8, Indels: 8
0.75 0.12 0.12
Matches are distributed among these distances:
38 13 0.27
39 6 0.12
40 30 0.61
ACGTcount: A:0.34, C:0.34, G:0.16, T:0.15
Consensus pattern (38 bp):
CCAACCCTACACACCATGTGGGGATATAATCAACCCAC
Found at i:97139900 original size:40 final size:40
Alignment explanation
Indices: 97139842--97139920 Score: 106
Period size: 40 Copynumber: 2.0 Consensus size: 40
97139832 ACACACCATG
*
97139842 TGGGGATGAAATCAACCCACCCAGCCCTACACACCAAGTA
1 TGGGGATGAAATCAACCCACCCAACCCTACACACCAAGTA
* * *
97139882 TGGGGAT-ATAATCGACCCATCCAACCCTATACACCAAGT
1 TGGGGATGA-AATCAACCCACCCAACCCTACACACCAAGT
97139921 GGTACCATAT
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
39 1 0.03
40 33 0.97
ACGTcount: A:0.34, C:0.33, G:0.16, T:0.16
Consensus pattern (40 bp):
TGGGGATGAAATCAACCCACCCAACCCTACACACCAAGTA
Found at i:97141895 original size:19 final size:20
Alignment explanation
Indices: 97141871--97141908 Score: 53
Period size: 19 Copynumber: 1.9 Consensus size: 20
97141861 GGTACCACCA
97141871 AAACAT-ATATCA-CATCTTT
1 AAACATCAT-TCATCATCTTT
97141890 AAACATCATTCATCATCTT
1 AAACATCATTCATCATCTT
97141909 ACCACCTTAT
Statistics
Matches: 17, Mismatches: 0, Indels: 3
0.85 0.00 0.15
Matches are distributed among these distances:
19 9 0.53
20 8 0.47
ACGTcount: A:0.39, C:0.24, G:0.00, T:0.37
Consensus pattern (20 bp):
AAACATCATTCATCATCTTT
Found at i:97143549 original size:28 final size:27
Alignment explanation
Indices: 97143483--97143579 Score: 131
Period size: 27 Copynumber: 3.6 Consensus size: 27
97143473 ATATTAAGTC
* * *
97143483 CGCACACTCAGTGCTATATAATCAGCT
1 CGCACACTTAGTGCTACATAATCAACT
*
97143510 CGCACACCTAGTGCTACATAATCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
97143538 CGCACACTTAGTGCTACATAGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
97143565 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
97143580 GCACAATTTA
Statistics
Matches: 62, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
27 38 0.61
28 24 0.39
ACGTcount: A:0.30, C:0.30, G:0.14, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:97146035 original size:56 final size:56
Alignment explanation
Indices: 97145937--97146046 Score: 136
Period size: 55 Copynumber: 2.0 Consensus size: 56
97145927 TACCTATAAA
* * *
97145937 TGGCCCACTAGGCCCAATCTCTTTCATATGGCCCATCAGCCC-ATTCACATTTATG
1 TGGCCCACTAGGCCCAATCACATTCATATGGCCCATCAGCCCAAATCACATTTATG
*
97145992 TGGCCCATTAGGCCCAAATCACATTCATATGG-CCA-CTAGGCCCAAATCACATTTA
1 TGGCCCACTAGGCCC-AATCACATTCATATGGCCCATC-A-GCCCAAATCACATTTA
97146047 CAGTCATGCT
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
54 1 0.02
55 18 0.38
56 18 0.38
57 10 0.21
ACGTcount: A:0.26, C:0.33, G:0.15, T:0.26
Consensus pattern (56 bp):
TGGCCCACTAGGCCCAATCACATTCATATGGCCCATCAGCCCAAATCACATTTATG
Found at i:97146042 original size:28 final size:28
Alignment explanation
Indices: 97145936--97146044 Score: 116
Period size: 28 Copynumber: 3.9 Consensus size: 28
97145926 ATACCTATAA
* *
97145936 ATGGCCCACTAGGCCCAATCTCTTTCAT
1 ATGGCCCACTAGGCCCAATCACATTCAT
* *
97145964 ATGGCCCA-TCA-GCCCATTCACATTTAT
1 ATGGCCCACT-AGGCCCAATCACATTCAT
* *
97145991 GTGGCCCATTAGGCCCAAATCACATTCAT
1 ATGGCCCACTAGGCCC-AATCACATTCAT
97146020 ATGG-CCACTAGGCCCAAATCACATT
1 ATGGCCCACTAGGCCC-AATCACATT
97146045 TACAGTCATG
Statistics
Matches: 68, Mismatches: 9, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
27 21 0.31
28 34 0.50
29 13 0.19
ACGTcount: A:0.27, C:0.33, G:0.15, T:0.26
Consensus pattern (28 bp):
ATGGCCCACTAGGCCCAATCACATTCAT
Found at i:97151266 original size:39 final size:39
Alignment explanation
Indices: 97151222--97151333 Score: 190
Period size: 39 Copynumber: 2.9 Consensus size: 39
97151212 TGAAGTCTAG
97151222 AGTGCTAAACAGAAGCCCGAAGGCTAACTGAAGCACACA
1 AGTGCTAAACAGAAGCCCGAAGGCTAACTGAAGCACACA
*
97151261 AGTGCTAAACGGAAGCCCGAAGGCTAACT-ATAGCACACA
1 AGTGCTAAACAGAAGCCCGAAGGCTAACTGA-AGCACACA
*
97151300 AGTGCTAAACAGAAGCTCGAAGGCTAACTGAAGC
1 AGTGCTAAACAGAAGCCCGAAGGCTAACTGAAGC
97151334 TCATCAGAGC
Statistics
Matches: 68, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
38 1 0.01
39 66 0.97
40 1 0.01
ACGTcount: A:0.39, C:0.24, G:0.24, T:0.12
Consensus pattern (39 bp):
AGTGCTAAACAGAAGCCCGAAGGCTAACTGAAGCACACA
Found at i:97151335 original size:18 final size:18
Alignment explanation
Indices: 97151233--97151333 Score: 69
Period size: 18 Copynumber: 5.3 Consensus size: 18
97151223 GTGCTAAACA
*
97151233 GAAGCCCGAAGGCTAACT
1 GAAGCACGAAGGCTAACT
* *
97151251 GAAGCACACAAGTGCTAAACG
1 GAAGCAC-GAAG-GCT-AACT
*
97151272 GAAGCCCGAAGGCTAACT
1 GAAGCACGAAGGCTAACT
* *
97151290 -ATAGCACACAAGTGCTAAACA
1 GA-AGCAC-GAAG-GCT-AACT
*
97151311 GAAGCTCGAAGGCTAACT
1 GAAGCACGAAGGCTAACT
97151329 GAAGC
1 GAAGC
97151334 TCATCAGAGC
Statistics
Matches: 63, Mismatches: 12, Indels: 16
0.69 0.13 0.18
Matches are distributed among these distances:
17 1 0.02
18 21 0.33
19 12 0.19
20 12 0.19
21 16 0.25
22 1 0.02
ACGTcount: A:0.39, C:0.25, G:0.25, T:0.12
Consensus pattern (18 bp):
GAAGCACGAAGGCTAACT
Found at i:97153525 original size:50 final size:50
Alignment explanation
Indices: 97153466--97153743 Score: 214
Period size: 48 Copynumber: 5.7 Consensus size: 50
97153456 AGGCTGTTAC
* * **
97153466 ATGCCATGT-CTTGAGCATGGTCTTACACTGGCTCTCATATATTGGTGCCA
1 ATGCCATGTCCTAGA-CATGGTCTTACACTGGCTCTCATACATCAGTGCCA
* *
97153516 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCTCATACATCAGTGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATACATCAGTGCCA
** * * **
97153566 ATGTTATGTCCTAGACATGGTCTTACACTGGCTCACATA-A-CAATGCTG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATACATCAGTGCCA
* * * * * * * * *
97153614 ATGCTATGTTCC-AAACATTGTCTTACATTGGCTCGCATA-TTGAG-GTCG
1 ATGCCATG-TCCTAGACATGGTCTTACACTGGCTCTCATACATCAGTGCCA
* * * * * *
97153662 ATGCCATGTCCCAGACATGGTCTTATATTAGCTCCCATA-A-CAGTGCCG
1 ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATACATCAGTGCCA
*
97153710 ATGCCATGCTCCAAG-CATGGTCTTACACTGGCTC
1 ATGCCATG-TCCTAGACATGGTCTTACACTGGCTC
97153744 ACACATAACC
Statistics
Matches: 187, Mismatches: 35, Indels: 14
0.79 0.15 0.06
Matches are distributed among these distances:
47 5 0.03
48 94 0.50
49 10 0.05
50 74 0.40
51 4 0.02
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.31
Consensus pattern (50 bp):
ATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATACATCAGTGCCA
Found at i:97159930 original size:50 final size:50
Alignment explanation
Indices: 97159854--97160084 Score: 215
Period size: 50 Copynumber: 4.7 Consensus size: 50
97159844 TAAAATGCTG
* * *
97159854 ATGCCATGTCACAGACATGGTTTTACACTGGCTCTCATACATTGGTGCCA
1 ATGCCATGTCCCAGACATGCTCTTACACTGGCTCTCATACATTGGTGCCA
* *
97159904 ATGCCATGTCCCAGACATGCTCTTACATTGGCTCTCATACATTGGTGCCG
1 ATGCCATGTCCCAGACATGCTCTTACACTGGCTCTCATACATTGGTGCCA
* * ** * * *
97159954 ATGCCATGTTCCAGACATGATCTTACTTTGGCTCACATAACA---ATGCTA
1 ATGCCATGTCCCAGACATGCTCTTACACTGGCTCTCAT-ACATTGGTGCCA
* * * *
97160002 ATGCCATGTTCCAAACAT-CATCTTACACTGGCTCGCAT--ATTGAG-GCCG
1 ATGCCATGTCCCAGACATGC-TCTTACACTGGCTCTCATACATTG-GTGCCA
* * *
97160050 ATGCCATGTCCTAGACATGGTCTTACACTAGCTCT
1 ATGCCATGTCCCAGACATGCTCTTACACTGGCTCT
97160085 GAAAACAATG
Statistics
Matches: 148, Mismatches: 26, Indels: 16
0.78 0.14 0.08
Matches are distributed among these distances:
45 1 0.01
48 65 0.44
50 79 0.53
51 3 0.02
ACGTcount: A:0.24, C:0.28, G:0.18, T:0.30
Consensus pattern (50 bp):
ATGCCATGTCCCAGACATGCTCTTACACTGGCTCTCATACATTGGTGCCA
Found at i:97160034 original size:48 final size:48
Alignment explanation
Indices: 97159953--97160134 Score: 145
Period size: 48 Copynumber: 3.8 Consensus size: 48
97159943 CATTGGTGCC
* * **
97159953 GATGCCATGTTCCAGACATGATCTTACTTTGGCTCACATAACAATGCT
1 GATGCCATGTTCCAAACATCATCTTACACTGGCTCACATAACAATGCT
* * *** * *
97160001 AATGCCATGTTCCAAACATCATCTTACACTGGCTCGCATATTGAGGCC
1 GATGCCATGTTCCAAACATCATCTTACACTGGCTCACATAACAATGCT
* ** * ** *
97160049 GATGCCATG-TCCTAGACATGGTCTTACACTAGCTCTGAAAACAATG-T
1 GATGCCATGTTCC-AAACATCATCTTACACTGGCTCACATAACAATGCT
*
97160096 CGATGTCATGTTCCAAACA-CAGTCTTACACTGGCTCACA
1 -GATGCCATGTTCCAAACATCA-TCTTACACTGGCTCACA
97160135 CATAAACCTA
Statistics
Matches: 99, Mismatches: 31, Indels: 8
0.72 0.22 0.06
Matches are distributed among these distances:
47 3 0.03
48 93 0.94
49 3 0.03
ACGTcount: A:0.28, C:0.27, G:0.17, T:0.28
Consensus pattern (48 bp):
GATGCCATGTTCCAAACATCATCTTACACTGGCTCACATAACAATGCT
Found at i:97160074 original size:96 final size:97
Alignment explanation
Indices: 97159902--97160131 Score: 247
Period size: 96 Copynumber: 2.4 Consensus size: 97
97159892 ACATTGGTGC
* * * *
97159902 CAATGCCATGTCCCAGACATGC-TCTTACATTGGCTCTCATACATTGGTGCCGATGCCATGTTCC
1 CAATGCCATGTTCCAAACAT-CATCTTACACTGGCTCGCATA-ATTGGTGCCGATGCCATGTTCC
** * *
97159966 AGACATGATCTTACTTTGGCTCACATAACAATG-
64 AGACATGATCTTACACTAGCTCACAAAACAATGT
97159999 CTAATGCCATGTTCCAAACATCATCTTACACTGGCTCGCAT-ATTGAG-GCCGATGCCATG-TCC
1 C-AATGCCATGTTCCAAACATCATCTTACACTGGCTCGCATAATTG-GTGCCGATGCCATGTTCC
* **
97160061 TAGACATGGTCTTACACTAGCTCTGAAAACAATGT
64 -AGACATGATCTTACACTAGCTCACAAAACAATGT
* *
97160096 CGATGTCATGTTCCAAACA-CAGTCTTACACTGGCTC
1 CAATGCCATGTTCCAAACATCA-TCTTACACTGGCTC
97160132 ACACATAAAC
Statistics
Matches: 114, Mismatches: 13, Indels: 13
0.81 0.09 0.09
Matches are distributed among these distances:
95 5 0.04
96 72 0.63
97 4 0.04
98 33 0.29
ACGTcount: A:0.26, C:0.28, G:0.17, T:0.29
Consensus pattern (97 bp):
CAATGCCATGTTCCAAACATCATCTTACACTGGCTCGCATAATTGGTGCCGATGCCATGTTCCAG
ACATGATCTTACACTAGCTCACAAAACAATGT
Found at i:97167862 original size:11 final size:11
Alignment explanation
Indices: 97167846--97167874 Score: 58
Period size: 11 Copynumber: 2.6 Consensus size: 11
97167836 TATAGACCAA
97167846 AAAAATATAAG
1 AAAAATATAAG
97167857 AAAAATATAAG
1 AAAAATATAAG
97167868 AAAAATA
1 AAAAATA
97167875 AATTTTTCTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 18 1.00
ACGTcount: A:0.76, C:0.00, G:0.07, T:0.17
Consensus pattern (11 bp):
AAAAATATAAG
Found at i:97221087 original size:15 final size:14
Alignment explanation
Indices: 97221065--97221103 Score: 51
Period size: 14 Copynumber: 2.7 Consensus size: 14
97221055 AATATATATG
*
97221065 AATTTTTTTCCATC
1 AATTTTTTTTCATC
*
97221079 AATTTTTTTTGATC
1 AATTTTTTTTCATC
97221093 AATTTATTTTT
1 AATTT-TTTTT
97221104 TGAGAACAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
14 17 0.77
15 5 0.23
ACGTcount: A:0.23, C:0.10, G:0.03, T:0.64
Consensus pattern (14 bp):
AATTTTTTTTCATC
Found at i:97232000 original size:16 final size:15
Alignment explanation
Indices: 97231973--97232006 Score: 59
Period size: 16 Copynumber: 2.2 Consensus size: 15
97231963 GTTACTTAAG
97231973 AAATAAGAAATAAAT
1 AAATAAGAAATAAAT
97231988 AAATAAGGAAATAAAT
1 AAATAA-GAAATAAAT
97232004 AAA
1 AAA
97232007 AATTAAAAAG
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 6 0.33
16 12 0.67
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.18
Consensus pattern (15 bp):
AAATAAGAAATAAAT
Found at i:97232025 original size:27 final size:27
Alignment explanation
Indices: 97231973--97232025 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
97231963 GTTACTTAAG
*
97231973 AAATAAGAAATAAATAAATAAGGAAAT
1 AAATAAGAAATAAATAAATAAAGAAAT
97232000 AAATAA-AAATTAAA-AAGATAAAGAAA
1 AAATAAGAAA-TAAATAA-ATAAAGAAA
97232026 AGGGTGAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.74, C:0.00, G:0.09, T:0.17
Consensus pattern (27 bp):
AAATAAGAAATAAATAAATAAAGAAAT
Found at i:97235730 original size:23 final size:22
Alignment explanation
Indices: 97235687--97235727 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
97235677 GGAACCTGCC
*
97235687 AGAAGAAAATAAAAGACAAATT
1 AGAAAAAAATAAAAGACAAATT
97235709 AGAAAAAAATAAAA-ACAAA
1 AGAAAAAAATAAAAGACAAA
97235728 AATAAAATGC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 5 0.28
22 13 0.72
ACGTcount: A:0.76, C:0.05, G:0.10, T:0.10
Consensus pattern (22 bp):
AGAAAAAAATAAAAGACAAATT
Found at i:97240298 original size:30 final size:30
Alignment explanation
Indices: 97240249--97240306 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
97240239 CACATGCTGG
* * *
97240249 CACATAGGCGTGTGGCCAGCCTATGTGGCT
1 CACACAGGCGTGTGCCCAGCCCATGTGGCT
*
97240279 CACACAGGTGTGTGCCCAGCCCATGTGG
1 CACACAGGCGTGTGCCCAGCCCATGTGG
97240307 AAATGCCCAG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.17, C:0.29, G:0.33, T:0.21
Consensus pattern (30 bp):
CACACAGGCGTGTGCCCAGCCCATGTGGCT
Found at i:97244238 original size:29 final size:29
Alignment explanation
Indices: 97244197--97244325 Score: 136
Period size: 29 Copynumber: 4.5 Consensus size: 29
97244187 GAAAGCATGT
*
97244197 ATATGAATGTGATGTGCGCCTAATGGGCT
1 ATATGAATGTGATGTGCGCCTAATGGGCC
* * *
97244226 GTATGAATGTGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATGTGCGCCTAATGGGCC
* * * *
97244255 ATACGAATATGATTTGGGCCTAATGGGCC
1 ATATGAATGTGATGTGCGCCTAATGGGCC
* * *
97244284 ATATGAATGTGAT-TGTGCCTAGTGAGCC
1 ATATGAATGTGATGTGCGCCTAATGGGCC
*
97244312 ATATGCATGT-ATGT
1 ATATGAATGTGATGT
97244326 AGACTTGTTT
Statistics
Matches: 86, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
27 2 0.02
28 22 0.26
29 62 0.72
ACGTcount: A:0.25, C:0.14, G:0.29, T:0.32
Consensus pattern (29 bp):
ATATGAATGTGATGTGCGCCTAATGGGCC
Found at i:97246768 original size:16 final size:15
Alignment explanation
Indices: 97246736--97246774 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
97246726 TGATAATAAC
97246736 TAATATATAATTATAT
1 TAAT-TATAATTATAT
*
97246752 TTATTATAATGTATAT
1 TAATTATAAT-TATAT
97246768 TAATTAT
1 TAATTAT
97246775 TTTTAGCCTT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
15 6 0.30
16 14 0.70
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.54
Consensus pattern (15 bp):
TAATTATAATTATAT
Found at i:97248830 original size:40 final size:39
Alignment explanation
Indices: 97248786--97248981 Score: 232
Period size: 40 Copynumber: 4.9 Consensus size: 39
97248776 GGATATAGCT
* *
97248786 ACTCGCTCAAATGCCTTCGGGACATAGCCCAGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GTTATAGTA
* * *
97248826 ACTCGCACCAATGCCTTCGGGACTTAGCCCAAATT-TGGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC--GTTATAGTA
* ** *
97248866 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTACTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGTTA-TAGTA
**
97248906 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGTTA-TAGTA
97248946 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTAT
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GTTAT
97248982 CATCCGAATA
Statistics
Matches: 136, Mismatches: 16, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
40 131 0.96
41 5 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (39 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGTTATAGTA
Found at i:97248895 original size:80 final size:79
Alignment explanation
Indices: 97248793--97248981 Score: 263
Period size: 80 Copynumber: 2.4 Consensus size: 79
97248783 GCTACTCGCT
* * *
97248793 CAAATGCCTTCGGGACATAGCCCAGTTATAGTAACTCGCACCAATGCCTTCGGGACTTAGCCC-A
1 CAAATGCCTTCGGGACTTAGCCC-GTTATACTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
97248857 AATTTGGTAACTAGCA
65 AA-TTAGTAACTAGCA
** *
97248873 CAAATGCCTTCGGGACTTAGCCCGGAATTACTAACTCGCACAAATGCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACTTAGCCCGTTA-TACTAACTCGCACAAATGCCTTCGGGACTTAGCCCGA
*
97248938 AATTAGTAACTCGCA
65 AATTAGTAACTAGCA
97248953 CAAATGCCTTCGGGACTTAGCCCGGTTAT
1 CAAATGCCTTCGGGACTTAGCCC-GTTAT
97248982 CATCCGAATA
Statistics
Matches: 96, Mismatches: 10, Indels: 6
0.86 0.09 0.05
Matches are distributed among these distances:
79 2 0.02
80 90 0.94
81 4 0.04
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (79 bp):
CAAATGCCTTCGGGACTTAGCCCGTTATACTAACTCGCACAAATGCCTTCGGGACTTAGCCCGAA
ATTAGTAACTAGCA
Found at i:97250611 original size:24 final size:26
Alignment explanation
Indices: 97250556--97250611 Score: 64
Period size: 25 Copynumber: 2.2 Consensus size: 26
97250546 TTTCTCCTAA
* *
97250556 ATTTTAATTTTATTTAATTCTTTAAT
1 ATTTTAATTTTATTAAATTCATTAAT
97250582 -TCTTTAA-TTTATTAAATT-ATTAAT
1 AT-TTTAATTTTATTAAATTCATTAAT
97250606 ATTTTA
1 ATTTTA
97250612 GAAAAATATT
Statistics
Matches: 26, Mismatches: 2, Indels: 6
0.76 0.06 0.18
Matches are distributed among these distances:
24 9 0.35
25 12 0.46
26 5 0.19
ACGTcount: A:0.34, C:0.04, G:0.00, T:0.62
Consensus pattern (26 bp):
ATTTTAATTTTATTAAATTCATTAAT
Found at i:97252514 original size:264 final size:264
Alignment explanation
Indices: 97252038--97252563 Score: 926
Period size: 264 Copynumber: 2.0 Consensus size: 264
97252028 TGGATCTAAG
* *
97252038 GAGAGCTTGGTACTTAAGCACTCAAATTGACTCACCTCCCCTTTTTTAGAATCCTACTTGGTGTA
1 GAGAGCTTGGTACTGAAGCACTCAAATTGACTCACCTCCCCTTTTCTAGAATCCTACTTGGTGTA
*
97252103 TAATATCTTTTCACTTCTAACAATGAGGACATTGTTTATCTTAAGTAGGGGGATCGAAAATTAAA
66 TAATATCTTTTCACTTCTAACAATGAGGACATTGTTTATCTTAAGTAGGGAGATCGAAAATTAAA
* * * *
97252168 ATTATTTGCTCTTAGGATTAATTTTTCTTTTAATTATGGTTAGGTTATATTTTGTTCAAAAATTT
131 ACTATTTCCTCTTAGAATTAACTTTTCTTTTAATTATGGTTAGGTTATATTTTGTTCAAAAATTT
* * *
97252233 GAAATTTTGTTAAGTATGCTAAACTTTAGTATGAATAAAGTTCTATTTTCTTAATAATTGTTATG
196 GAAATTTTGTTAAGTATGCTAAACTTTAGTATGAATAAAGTTCTATTATCTTAATAATCGGTATG
97252298 TTAA
261 TTAA
*
97252302 GAGAGTTTGGTACTGAAGCACTCAAATTGACTCACCTCCCCTTTTCTAGAATCCTACTTGGTGTA
1 GAGAGCTTGGTACTGAAGCACTCAAATTGACTCACCTCCCCTTTTCTAGAATCCTACTTGGTGTA
*
97252367 TAGTATCTTTTCACTTCTAACAATGAGGACATTGTTTATCTTAAGTAGGGAGATCGAAAATTAAA
66 TAATATCTTTTCACTTCTAACAATGAGGACATTGTTTATCTTAAGTAGGGAGATCGAAAATTAAA
97252432 ACTATTTCCTCTTAGAATTAACTTTTCTTTTAATTATGGTTAGGTTATATTTTGTTCAAAAATTT
131 ACTATTTCCTCTTAGAATTAACTTTTCTTTTAATTATGGTTAGGTTATATTTTGTTCAAAAATTT
* *
97252497 GAAATTTTGTTAAGTATGGTAAACTTTTGTATGAATAAAGTTCTATTATCTTAATAATCGGTATG
196 GAAATTTTGTTAAGTATGCTAAACTTTAGTATGAATAAAGTTCTATTATCTTAATAATCGGTATG
97252562 TT
261 TT
97252564 CACTGAGTTA
Statistics
Matches: 248, Mismatches: 14, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
264 248 1.00
ACGTcount: A:0.30, C:0.13, G:0.15, T:0.42
Consensus pattern (264 bp):
GAGAGCTTGGTACTGAAGCACTCAAATTGACTCACCTCCCCTTTTCTAGAATCCTACTTGGTGTA
TAATATCTTTTCACTTCTAACAATGAGGACATTGTTTATCTTAAGTAGGGAGATCGAAAATTAAA
ACTATTTCCTCTTAGAATTAACTTTTCTTTTAATTATGGTTAGGTTATATTTTGTTCAAAAATTT
GAAATTTTGTTAAGTATGCTAAACTTTAGTATGAATAAAGTTCTATTATCTTAATAATCGGTATG
TTAA
Found at i:97262492 original size:25 final size:25
Alignment explanation
Indices: 97262426--97262520 Score: 109
Period size: 25 Copynumber: 3.8 Consensus size: 25
97262416 GTTTTGACCT
** *
97262426 ACAGCTCGTGTGAGCAGGCCAATTTT
1 ACAGCTCGTGTGAGCATACCAA-TTC
* *
97262452 ACAGCTCTTGTAAGCATACCAATTC
1 ACAGCTCGTGTGAGCATACCAATTC
* *
97262477 ATAGCTCGTGTGAGCATACCGATTC
1 ACAGCTCGTGTGAGCATACCAATTC
*
97262502 ACAGCTTGTGTGAGCATAC
1 ACAGCTCGTGTGAGCATAC
97262521 ATGTACATGA
Statistics
Matches: 58, Mismatches: 11, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
25 40 0.69
26 18 0.31
ACGTcount: A:0.26, C:0.24, G:0.22, T:0.27
Consensus pattern (25 bp):
ACAGCTCGTGTGAGCATACCAATTC
Found at i:97276372 original size:46 final size:47
Alignment explanation
Indices: 97276230--97276491 Score: 243
Period size: 47 Copynumber: 5.6 Consensus size: 47
97276220 TGTGAGCTAC
* * *
97276230 TGTAAGA-CATGTCTGGGACATGCATCAGCCAT-ATTATGAGAGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCCTTGA-GATGAGAGCCAG
* * * *
97276276 TGTAAGACCATGTCTAGGACATTGCATCGGCATTGAGACGAGAGCTAG
1 TGTAAGACCATGTCTGGGACA-TGCATCGGCCTTGAGATGAGAGCCAG
*
97276324 TGTAAGA-CATGTCTGAGACATGCATCGGCCTTGAGATGTA-AGCCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATG-AGAGCCAG
* * * * *
97276370 TGTATGA-CATGTCTGGGACATGCATC-GACTACGAGATGATAGTCAG
1 TGTAAGACCATGTCTGGGACATGCATCGGCCT-TGAGATGAGAGCCAG
* * *
97276416 TGTAAGACCATGTCTGGAACATGGCATC-GACTTGAGAT-ATGAGCTAG
1 TGTAAGACCATGTCTGGGACAT-GCATCGGCCTTGAGATGA-GAGCCAG
* *
97276463 TGTAAAACCATGTCGGGGACATGGCATCG
1 TGTAAGACCATGTCTGGGACAT-GCATCG
97276492 ACACCTTACC
Statistics
Matches: 180, Mismatches: 26, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
45 4 0.02
46 70 0.39
47 71 0.39
48 34 0.19
49 1 0.01
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (47 bp):
TGTAAGACCATGTCTGGGACATGCATCGGCCTTGAGATGAGAGCCAG
Found at i:97290952 original size:43 final size:42
Alignment explanation
Indices: 97290816--97290969 Score: 159
Period size: 43 Copynumber: 3.6 Consensus size: 42
97290806 TGTGTTTTCG
* * * *
97290816 TGTAAGACCACGTCTGGGACGTTGGCATCGACTTA-TGGTTTACA
1 TGTAAGACCACATCTGGGACGTTGGCAT--A-ATACTTGATTACA
* * *
97290860 TGTAAGACCACGTCTGGGACGTTGGCATTATACTTGATTTCA
1 TGTAAGACCACATCTGGGACGTTGGCATAATACTTGATTACA
** *
97290902 TGTAAGACCTTATCTGGGAC-TGTGGCATCAATATTTGATTACA
1 TGTAAGACCACATCTGGGACGT-TGGCAT-AATACTTGATTACA
97290945 TGTAAGACCACATCTGGGACGTTGG
1 TGTAAGACCACATCTGGGACGTTGG
97290970 AATTGTACTA
Statistics
Matches: 93, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
41 3 0.03
42 29 0.31
43 32 0.34
44 29 0.31
ACGTcount: A:0.25, C:0.19, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACATCTGGGACGTTGGCATAATACTTGATTACA
Found at i:97293045 original size:27 final size:27
Alignment explanation
Indices: 97293004--97293057 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
97292994 TGTCATGTGA
* *
97293004 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
97293031 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
97293058 GGTTTACCTG
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:97293372 original size:49 final size:50
Alignment explanation
Indices: 97293282--97293514 Score: 265
Period size: 49 Copynumber: 4.7 Consensus size: 50
97293272 ATCTATTGTG
*
97293282 AGGTCACATGTGTAGTACTAAGTGCAGGCTGCTACGTGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* *** *
97293332 -GGTCGA-ATGTGTAGTACTAAGTGTAGGCTACTATACGTACCCGATAACTT
1 AGGTC-ACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TT
* * * * ** **
97293382 CGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAAATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
* * *
97293432 AGGTCACGTGTGTAGTACTAAGTGCAGGATACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
*
97293482 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
97293515 TGCGTACTAG
Statistics
Matches: 150, Mismatches: 29, Indels: 9
0.80 0.15 0.05
Matches are distributed among these distances:
49 69 0.46
50 47 0.31
51 34 0.23
ACGTcount: A:0.27, C:0.18, G:0.27, T:0.29
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
Found at i:97298680 original size:27 final size:27
Alignment explanation
Indices: 97298639--97298692 Score: 72
Period size: 27 Copynumber: 2.0 Consensus size: 27
97298629 TGTCATGTGA
* *
97298639 AATTGAATGGCAAATTATTGTTACATG
1 AATTGAATGGCAAATTACTATTACATG
**
97298666 AATTGAATGTTAAATTACTATTACATG
1 AATTGAATGGCAAATTACTATTACATG
97298693 GGTTGTACCT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (27 bp):
AATTGAATGGCAAATTACTATTACATG
Found at i:97298998 original size:49 final size:50
Alignment explanation
Indices: 97298916--97299148 Score: 238
Period size: 49 Copynumber: 4.7 Consensus size: 50
97298906 ATCTATTGTG
* * * *
97298916 AGGTCACATATGTAGTAATAAGTGCAGACTACTACGTGTACCAGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * *
97298966 -GGTCGA-ATGTGTAGTACTAAGTGCAGGCTACTATACGTACCCGATAACTT
1 AGGTC-ACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAA-TT
* * * * * * **
97299016 CGATCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
* * * * *
97299066 AGGTCACGTGTGTAGTACTAAGGGCAAGATACTACATGTACCGGATAATT
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
*
97299116 -GGTCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 AGGTCACATGTGTAGTACTAAGTGCAGGCTACTA
97299149 TGCGCACCAG
Statistics
Matches: 146, Mismatches: 33, Indels: 9
0.78 0.18 0.05
Matches are distributed among these distances:
49 66 0.45
50 45 0.31
51 35 0.24
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.28
Consensus pattern (50 bp):
AGGTCACATGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT
Found at i:97299113 original size:101 final size:98
Alignment explanation
Indices: 97298919--97299148 Score: 264
Period size: 100 Copynumber: 2.3 Consensus size: 98
97298909 TATTGTGAGG
* * *
97298919 TCACATATGTAGTAATAAGTGCAGACTACTACGTGTACCAGATAATTGGTCGAATGTGTAGTACT
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGAATGTGTAGTACT
* * * *
97298984 AAGTGCAGGCTACTATACGTACCCGATAACTTCGA
66 AAGGGCAAGATACTACACGTACCCGATAA-TT-GA
* * * ** *
97299019 TCACGTGTGTAGTACTAAATGCAGGCTACTACGTGTATCAGATGGTTAGGTC-ACGTGTGTAGTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCGA-ATGTGTAGTA
* * *
97299083 CTAAGGGCAAGATACTACATGTACCGGATAATTGG
64 CTAAGGGCAAGATACTACACGTACCCGATAATTGA
*
97299118 TCGCATGTGTAGTACTAAGTGCAGGCTACTA
1 TCACATGTGTAGTACTAAGTGCAGGCTACTA
97299149 TGCGCACCAG
Statistics
Matches: 109, Mismatches: 19, Indels: 5
0.82 0.14 0.04
Matches are distributed among these distances:
99 29 0.27
100 42 0.39
101 38 0.35
ACGTcount: A:0.30, C:0.18, G:0.24, T:0.28
Consensus pattern (98 bp):
TCACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCGAATGTGTAGTACT
AAGGGCAAGATACTACACGTACCCGATAATTGA
Found at i:97303311 original size:6 final size:6
Alignment explanation
Indices: 97303300--97303401 Score: 104
Period size: 6 Copynumber: 16.8 Consensus size: 6
97303290 AACCAAAATG
*
97303300 AGAATC AGAATC AGAATC AGTAA-C AGAATC AGAATC AGAATC A-ATATT
1 AGAATC AGAATC AGAATC AG-AATC AGAATC AGAATC AGAATC AGA-ATC
* *
97303348 AGTAA-C AGAATC AGAATC AGAATC AGAATT ACGTGA-C AGAATC AGAATC
1 AG-AATC AGAATC AGAATC AGAATC AGAATC A-G-AATC AGAATC AGAATC
97303397 AGAAT
1 AGAAT
97303402 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 6, Indels: 18
0.77 0.06 0.17
Matches are distributed among these distances:
5 6 0.07
6 68 0.84
7 5 0.06
8 2 0.02
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (6 bp):
AGAATC
Found at i:97303315 original size:30 final size:29
Alignment explanation
Indices: 97303279--97303401 Score: 140
Period size: 30 Copynumber: 4.1 Consensus size: 29
97303269 AAGAAACATT
* * *
97303279 ATCAGAATTGGAACCAAAATGAGAATCAGA
1 ATCAGAATTGTAA-CAGAATCAGAATCAGA
*
97303309 ATCAGAATCAGTAACAGAATCAGAATCAGA
1 ATCAGAAT-TGTAACAGAATCAGAATCAGA
97303339 ATCA-ATATTAGTAACAGAATCAGAATCAGA
1 ATCAGA-ATT-GTAACAGAATCAGAATCAGA
*
97303369 ATCAGAATTACGTGACAGAATCAGAATCAGA
1 ATCAGAATT--GTAACAGAATCAGAATCAGA
97303400 AT
1 AT
97303402 GTGAATGCAA
Statistics
Matches: 81, Mismatches: 7, Indels: 9
0.84 0.07 0.09
Matches are distributed among these distances:
29 1 0.01
30 55 0.68
31 25 0.31
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (29 bp):
ATCAGAATTGTAACAGAATCAGAATCAGA
Found at i:97303561 original size:27 final size:26
Alignment explanation
Indices: 97303524--97303589 Score: 87
Period size: 27 Copynumber: 2.5 Consensus size: 26
97303514 AGCATGGCTG
*
97303524 CCAGAACAGATATCGTGACAGAGTCA
1 CCAGAACAGATATCGTGACAGAGCCA
* *
97303550 CCAGATACAGATATTGTGGCAGAGCCA
1 CCAGA-ACAGATATCGTGACAGAGCCA
97303577 CCAGAATCAGATA
1 CCAGAA-CAGATA
97303590 ATGTGGCAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 3
0.85 0.07 0.07
Matches are distributed among these distances:
26 6 0.17
27 29 0.83
ACGTcount: A:0.38, C:0.23, G:0.23, T:0.17
Consensus pattern (26 bp):
CCAGAACAGATATCGTGACAGAGCCA
Found at i:97303594 original size:27 final size:27
Alignment explanation
Indices: 97303524--97303597 Score: 82
Period size: 27 Copynumber: 2.8 Consensus size: 27
97303514 AGCATGGCTG
* *
97303524 CCAGAA-CAGAT-ATCGTGACAGAGTCA
1 CCAGAATCAGATAAT-GTGGCAGAGCCA
*
97303550 CCAG-ATACAGATATTGTGGCAGAGCCA
1 CCAGAAT-CAGATAATGTGGCAGAGCCA
97303577 CCAGAATCAGATAATGTGGCA
1 CCAGAATCAGATAATGTGGCA
97303598 AACCCACCTA
Statistics
Matches: 40, Mismatches: 4, Indels: 7
0.78 0.08 0.14
Matches are distributed among these distances:
25 1 0.03
26 4 0.10
27 32 0.80
28 3 0.08
ACGTcount: A:0.36, C:0.22, G:0.24, T:0.18
Consensus pattern (27 bp):
CCAGAATCAGATAATGTGGCAGAGCCA
Found at i:97303604 original size:27 final size:27
Alignment explanation
Indices: 97303548--97303605 Score: 73
Period size: 27 Copynumber: 2.1 Consensus size: 27
97303538 GTGACAGAGT
* * *
97303548 CACCAGATACAGATATTGTGGCAGAGC
1 CACCAGATACAGATAATGTGGCAAACC
97303575 CACCAGA-ATCAGATAATGTGGCAAACC
1 CACCAGATA-CAGATAATGTGGCAAACC
97303602 CACC
1 CACC
97303606 TAACAGAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
26 1 0.04
27 26 0.96
ACGTcount: A:0.36, C:0.28, G:0.21, T:0.16
Consensus pattern (27 bp):
CACCAGATACAGATAATGTGGCAAACC
Found at i:97303810 original size:22 final size:22
Alignment explanation
Indices: 97303762--97303820 Score: 64
Period size: 22 Copynumber: 2.7 Consensus size: 22
97303752 GTAAATACGT
*
97303762 TTGGCACGAAGCCATAGTCAAG
1 TTGGCACAAAGCCATAGTCAAG
* * * *
97303784 ATGGCACAAAGCCATATTTAGG
1 TTGGCACAAAGCCATAGTCAAG
*
97303806 TTGGCACAGAGCCAT
1 TTGGCACAAAGCCAT
97303821 TAATAACGGG
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
22 30 1.00
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.20
Consensus pattern (22 bp):
TTGGCACAAAGCCATAGTCAAG
Found at i:97303987 original size:27 final size:26
Alignment explanation
Indices: 97303908--97303990 Score: 94
Period size: 27 Copynumber: 3.1 Consensus size: 26
97303898 TCGATCGGTC
* * * * *
97303908 AACAGGTATTGTGACAGAGTCGCCAA
1 AACAGATATTGTGGCAGAGCCACCAG
97303934 ATACAGATATTGTGGCAGAGCCACCAG
1 A-ACAGATATTGTGGCAGAGCCACCAG
*
97303961 AACAGATATTTGTGGCATAGCCACCAG
1 AACAGATA-TTGTGGCAGAGCCACCAG
97303988 AAC
1 AAC
97303991 GCTTCCTCCG
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.16
27 41 0.84
ACGTcount: A:0.35, C:0.22, G:0.24, T:0.19
Consensus pattern (26 bp):
AACAGATATTGTGGCAGAGCCACCAG
Found at i:97304219 original size:27 final size:27
Alignment explanation
Indices: 97304189--97304384 Score: 221
Period size: 27 Copynumber: 7.3 Consensus size: 27
97304179 GGGGCAAAAT
* * *
97304189 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
97304216 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* *
97304243 GGTATTTCTGCCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
97304270 GATAATTCTACCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
97304297 GGTAAATCTATCCTATAAGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
97304324 AGTAATTCTACCCTATAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
* * *
97304351 AGAAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAAGGGTATTTC
*
97304378 AGTAATT
1 GGTAATT
97304385 TCACAATCAA
Statistics
Matches: 144, Mismatches: 25, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 144 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAAGGGTATTTC
Found at i:97304450 original size:27 final size:27
Alignment explanation
Indices: 97304389--97304610 Score: 175
Period size: 27 Copynumber: 8.2 Consensus size: 27
97304379 GTAATTTCAC
* * * *
97304389 AATCAAGGATAAAACGACAATTCTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
97304416 AATCGAGGGTAAAACGATAATTTTGTA
1 AATCGAGGGTAAAACGATAATTTTGTA
* * * *
97304443 AA-CTGAGGGTAAACCAATCATTCTGTA
1 AATC-GAGGGTAAAACGATAATTTTGTA
* * * **
97304470 AATCAACGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTTTGTA
* *
97304497 AATCGAGGGTAAAA-TAGTAATTTTATA
1 AATCGAGGGTAAAACGA-TAATTTTGTA
* *
97304524 AATCGAGGGTAAAA-TAGTAATTCTGTA
1 AATCGAGGGTAAAACGA-TAATTTTGTA
*
97304551 AA-CTGAGGGTAAAA-TAGTAATTTTGTA
1 AATC-GAGGGTAAAACGA-TAATTTTGTA
* **
97304578 AATCGAGGGTAAAACGGTAATTTTACA
1 AATCGAGGGTAAAACGATAATTTTGTA
97304605 AATCGA
1 AATCGA
97304611 TGGCATTTCA
Statistics
Matches: 160, Mismatches: 29, Indels: 12
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.01
27 156 0.98
28 2 0.01
ACGTcount: A:0.42, C:0.10, G:0.19, T:0.28
Consensus pattern (27 bp):
AATCGAGGGTAAAACGATAATTTTGTA
Done.