Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 286 of 297
Found at i:97304501 original size:81 final size:81
Alignment explanation
Indices: 97304415--97304610 Score: 218
Period size: 81 Copynumber: 2.4 Consensus size: 81
97304405 ACAATTCTGT
* * *
97304415 AAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAACCAATCATTCTGTAAA-TCAACG
1 AAATCGAGGGTAAAACGATAATTTTATAAATC-GAGGGTAAAACAATAATTCTGTAAACT-AACG
*
97304478 GTAAAACGGTAATTTTAC
64 GTAAAACAGTAATTTTAC
* * * * *
97304496 AAATCGAGGGTAAAA-TAGTAATTTTATAAATCGAGGGTAAAATAGTAATTCTGTAAACTGAGGG
1 AAATCGAGGGTAAAACGA-TAATTTTATAAATCGAGGGTAAAACAATAATTCTGTAAACTAACGG
* **
97304560 TAAAATAGTAATTTTGT
65 TAAAACAGTAATTTTAC
* *
97304577 AAATCGAGGGTAAAACGGTAATTTTACAAATCGA
1 AAATCGAGGGTAAAACGATAATTTTATAAATCGA
97304611 TGGCATTTCA
Statistics
Matches: 96, Mismatches: 15, Indels: 8
0.81 0.13 0.07
Matches are distributed among these distances:
80 1 0.01
81 93 0.97
82 2 0.02
ACGTcount: A:0.42, C:0.10, G:0.20, T:0.29
Consensus pattern (81 bp):
AAATCGAGGGTAAAACGATAATTTTATAAATCGAGGGTAAAACAATAATTCTGTAAACTAACGGT
AAAACAGTAATTTTAC
Found at i:97304626 original size:54 final size:54
Alignment explanation
Indices: 97304407--97304610 Score: 225
Period size: 54 Copynumber: 3.8 Consensus size: 54
97304397 ATAAAACGAC
* * ** ** *
97304407 AATTCTGTAAATCGAGGGTAAAACGATAATTTTGTAAA-CTGAGGGTAAACCAAT
1 AATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATC-GAGGGTAAAATAGT
* * * *
97304461 CATTCTGTAAATCAACGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATAGT
1 AATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATAGT
* ** *
97304515 AATTTTATAAATCGAGGGTAAAATAGTAATTCTGTA-AACT-GAGGGTAAAATAGT
1 AATTTTGTAAATCGAGGGTAAAACGGTAATT-T-TACAAATCGAGGGTAAAATAGT
97304569 AATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGA
1 AATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGA
97304611 TGGCATTTCA
Statistics
Matches: 124, Mismatches: 21, Indels: 10
0.80 0.14 0.06
Matches are distributed among these distances:
52 2 0.02
53 4 0.03
54 111 0.90
55 5 0.04
56 2 0.02
ACGTcount: A:0.41, C:0.10, G:0.20, T:0.29
Consensus pattern (54 bp):
AATTTTGTAAATCGAGGGTAAAACGGTAATTTTACAAATCGAGGGTAAAATAGT
Found at i:97305539 original size:46 final size:46
Alignment explanation
Indices: 97305472--97305658 Score: 169
Period size: 46 Copynumber: 4.0 Consensus size: 46
97305462 GGGTGTTACA
*
97305472 TATCATCTCGTAGCTGATGCATGTCCCAGACATGTCTTACACTGGC
1 TATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
* *
97305518 TATCATCTCGTAGCCGATGCATATCCCAGACATGTCTTACACTAGC
1 TATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
* * * ** * *
97305564 TCTCGTCTC-AATGTTGATGCCATGTCCCAGACATGGTCTTATATTGGC
1 TATCATCTCGTA-GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGC
* **** * * * *
97305612 TCTCATAAAATGGTCGATGAATGTGCCAGACATGTCTTACACTGGC
1 TATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
97305658 T
1 T
97305659 CACGTAAGTG
Statistics
Matches: 114, Mismatches: 23, Indels: 8
0.79 0.16 0.06
Matches are distributed among these distances:
45 1 0.01
46 67 0.59
47 25 0.22
48 21 0.18
ACGTcount: A:0.24, C:0.26, G:0.19, T:0.31
Consensus pattern (46 bp):
TATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGC
Found at i:97324228 original size:50 final size:50
Alignment explanation
Indices: 97324107--97324388 Score: 264
Period size: 50 Copynumber: 5.6 Consensus size: 50
97324097 CTGGTACGCA
* * *
97324107 TAGTAGCCTGCACTTAGTACTACACATGCGACC-AACAATCCGATACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * * *
97324156 TATTATCCTGTACTTAGTACTACACATGTGACCTAACCATCTGATATACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
* * * *** * * * *
97324206 TAGTAGCCTACACTTAGTACTACACACGTGA-TTGAAGTTGTCGGGTACGCA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT-AA-CCATCTGATACACG
* *
97324257 TAGTAGCCTGCACTTAGTACTACACATGCGACCTAACTATCT-AGTACACG
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGA-TACACG
* * * * *
97324307 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAAAATCATCTTAAACACA
1 TAGTAGCCTGCACTTAGTACTACACATGTGACCT--AACCATCTGATACACG
* *
97324359 TAGTAGCCTACACATAGTACTACACATGTG
1 TAGTAGCCTGCACTTAGTACTACACATGTG
97324389 TTCTCACAAT
Statistics
Matches: 185, Mismatches: 40, Indels: 13
0.78 0.17 0.05
Matches are distributed among these distances:
49 30 0.16
50 80 0.43
51 36 0.19
52 38 0.21
53 1 0.01
ACGTcount: A:0.32, C:0.26, G:0.16, T:0.27
Consensus pattern (50 bp):
TAGTAGCCTGCACTTAGTACTACACATGTGACCTAACCATCTGATACACG
Found at i:97333735 original size:43 final size:43
Alignment explanation
Indices: 97333682--97334179 Score: 554
Period size: 43 Copynumber: 11.6 Consensus size: 43
97333672 GCAAGTTATA
** *
97333682 CTTCGGTATTATCAAATGATGCACTGTGTGTGCCAGTATATTG
1 CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
* *
97333725 CTTCGATATTATCC-ACTGATGCACTGTGTGTGCCAATATGTTG
1 CTTCGGTATTATCCGA-TGATGCACTGTGTGTGCCAGTATGTTG
* * * *
97333768 CTTCAGTTTTATCTGATGATGCACCTGTGTGTGCCAATATGTTG
1 CTTCGGTATTATCCGATGATGCA-CTGTGTGTGCCAGTATGTTG
* * * *
97333812 CTTCGGTATTACCCGACGATGCATTGTGTGTGCCAGTATTTTG
1 CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
* * * * *
97333855 TTTCGGTATTACCCGACGATGCATTGTGTGTGCCAGAATGTTG
1 CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
* * * *
97333898 CTTCGGTATTACCCGATGATGCACTATGTGTGCTAGAATGTTG
1 CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
* * *
97333941 CTACGGTATTA-CCCAGTGATGCACTGTGTGTGCCAATATGTTG
1 CTTCGGTATTATCCGA-TGATGCACTGTGTGTGCCAGTATGTTG
*
97333984 CTTCGGTATTA-CTCGATGATGCACTGTGTGTGCTAGTATGTTG
1 CTTCGGTATTATC-CGATGATGCACTGTGTGTGCCAGTATGTTG
* * * * *
97334027 CTTCGATATTACCCGATGATGCACTGTGTATGCCAATATATTG
1 CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
* *
97334070 CTTCGGTATTATCCAATGATGCACTGTATGTGCCAGTATGTTG
1 CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
* * * * * *
97334113 AC-TCGGTTTTATCCAATAATGCACTATGTGTGTCAGTATGTTT
1 -CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
* *
97334156 CTTTGGTATTATTCGATGATGCAC
1 CTTCGGTATTATCCGATGATGCAC
97334180 AATATGTGCC
Statistics
Matches: 390, Mismatches: 57, Indels: 16
0.84 0.12 0.03
Matches are distributed among these distances:
42 5 0.01
43 342 0.88
44 43 0.11
ACGTcount: A:0.20, C:0.19, G:0.23, T:0.37
Consensus pattern (43 bp):
CTTCGGTATTATCCGATGATGCACTGTGTGTGCCAGTATGTTG
Found at i:97336265 original size:93 final size:93
Alignment explanation
Indices: 97336153--97336323 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
97336143 GCCCATAAGT
* *
97336153 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97336218 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
*
97336246 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
97336311 CGAGTTCGGATGC
66 CGAGTTCGGATGC
97336324 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:97336320 original size:46 final size:46
Alignment explanation
Indices: 97336145--97336320 Score: 225
Period size: 46 Copynumber: 3.8 Consensus size: 46
97336135 TGTAACCCGC
* * *
97336145 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
97336191 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* *
97336241 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
97336284 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97336321 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 64 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.29, G:0.21, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:97338756 original size:30 final size:30
Alignment explanation
Indices: 97338712--97338800 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
97338702 CAAAGATAAC
*
97338712 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
97338741 GAGAAACCCGGAATAAAGAAATCC-AGAATA
1 AAGAAACCCGGAATAAAGAAATCCAAG-ATA
* * *
97338771 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
97338801 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 9 0.18
30 34 0.68
31 7 0.14
ACGTcount: A:0.56, C:0.16, G:0.18, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:97338760 original size:15 final size:14
Alignment explanation
Indices: 97338712--97338794 Score: 58
Period size: 15 Copynumber: 5.6 Consensus size: 14
97338702 CAAAGATAAC
*
97338712 AAGAAAACCGAATA
1 AAGAAACCCGAATA
* *
97338726 AAGAAATCCAAGATA
1 AAGAAACCCGA-ATA
*
97338741 GAGAAACCCGGAATA
1 AAGAAACCC-GAATA
*
97338756 AAGAAATCCAGAATA
1 AAGAAA-CCCGAATA
* * *
97338771 AAGAGATCCAGGATA
1 AAGA-AACCCGAATA
97338786 AAGAAACCC
1 AAGAAACCC
97338795 AAGATACGAT
Statistics
Matches: 54, Mismatches: 11, Indels: 8
0.74 0.15 0.11
Matches are distributed among these distances:
14 12 0.22
15 38 0.70
16 4 0.07
ACGTcount: A:0.55, C:0.17, G:0.18, T:0.10
Consensus pattern (14 bp):
AAGAAACCCGAATA
Found at i:97338800 original size:15 final size:15
Alignment explanation
Indices: 97338723--97338800 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
97338713 AGAAAACCGA
97338723 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
97338738 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
97338752 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
97338767 AATAAAGAGATCCAGG
1 -ATAAAGAAATCCAAG
*
97338783 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
97338798 ATA
1 ATA
97338801 CGATACTATG
Statistics
Matches: 50, Mismatches: 10, Indels: 6
0.76 0.15 0.09
Matches are distributed among these distances:
14 3 0.06
15 44 0.88
16 3 0.06
ACGTcount: A:0.55, C:0.15, G:0.18, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:97348738 original size:9 final size:9
Alignment explanation
Indices: 97348726--97348866 Score: 61
Period size: 9 Copynumber: 14.8 Consensus size: 9
97348716 TTTAAAATAT
97348726 TAAAAATTA
1 TAAAAATTA
97348735 TAAAAATAGTA
1 TAAAAAT--TA
*
97348746 AAAAAATTA
1 TAAAAATTA
* *
97348755 TAAACATTCT
1 TAAAAATT-A
* *
97348765 TAAAAAATG
1 TAAAAATTA
*
97348774 TAAAAAGTTG
1 TAAAAA-TTA
97348784 TAAAAATTA
1 TAAAAATTA
*
97348793 TAAAAAAATTGT
1 T--AAAAATT-A
* *
97348805 TATAAATTC
1 TAAAAATTA
* * *
97348814 TTAAATTTG
1 TAAAAATTA
97348823 TAAAAATTA
1 TAAAAATTA
*
97348832 TTTTAAAA-TA
1 --TAAAAATTA
97348842 TAAAATATT-
1 TAAAA-ATTA
97348851 TAAAAATTA
1 TAAAAATTA
97348860 TAAAAAT
1 TAAAAAT
97348867 ATTTAAGCAG
Statistics
Matches: 99, Mismatches: 21, Indels: 24
0.69 0.15 0.17
Matches are distributed among these distances:
8 7 0.07
9 48 0.48
10 23 0.23
11 20 0.20
12 1 0.01
ACGTcount: A:0.58, C:0.02, G:0.04, T:0.35
Consensus pattern (9 bp):
TAAAAATTA
Found at i:97348739 original size:50 final size:49
Alignment explanation
Indices: 97348638--97348740 Score: 111
Period size: 50 Copynumber: 2.1 Consensus size: 49
97348628 TTTGATCATT
* *
97348638 AAAATTATTTTAAAATGTAAAAAAATATAAAAGTAGTAAAAATCATTTAA
1 AAAATTATTTTAAAATATAAAAAAATATAAAAGTAGTAAAAAT-ATATAA
* * *
97348688 AAAATTATTTTACAATATATAAATAAATTTTAAAA-TATTAAAAAT-TATAA
1 AAAATTATTTTA-AA-ATATAAA-AAAATATAAAAGTAGTAAAAATATATAA
97348738 AAA
1 AAA
97348741 TAGTAAAAAA
Statistics
Matches: 45, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
50 19 0.42
51 2 0.04
52 15 0.33
53 9 0.20
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (49 bp):
AAAATTATTTTAAAATATAAAAAAATATAAAAGTAGTAAAAATATATAA
Found at i:97348769 original size:20 final size:20
Alignment explanation
Indices: 97348727--97348772 Score: 56
Period size: 20 Copynumber: 2.3 Consensus size: 20
97348717 TTAAAATATT
*
97348727 AAAAATTATAAAAATAGTAA
1 AAAAATTATAAAAATACTAA
* * *
97348747 AAAAATTATAAACATTCTTA
1 AAAAATTATAAAAATACTAA
97348767 AAAAAT
1 AAAAAT
97348773 GTAAAAAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.65, C:0.04, G:0.02, T:0.28
Consensus pattern (20 bp):
AAAAATTATAAAAATACTAA
Found at i:97348787 original size:29 final size:31
Alignment explanation
Indices: 97348726--97348801 Score: 79
Period size: 29 Copynumber: 2.6 Consensus size: 31
97348716 TTTAAAATAT
97348726 TAAAAATTAT--AAAAATAGTAAAAAAATTA
1 TAAAAATTATAAAAAAATAGTAAAAAAATTA
* * * * *
97348755 TAAACATTCTTAAAAAAT-GT-AAAAAGTTG
1 TAAAAATTATAAAAAAATAGTAAAAAAATTA
97348784 TAAAAATTATAAAAAAAT
1 TAAAAATTATAAAAAAAT
97348802 TGTTATAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 4
0.78 0.14 0.08
Matches are distributed among these distances:
29 30 0.79
30 2 0.05
31 6 0.16
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (31 bp):
TAAAAATTATAAAAAAATAGTAAAAAAATTA
Found at i:97348825 original size:49 final size:48
Alignment explanation
Indices: 97348710--97348832 Score: 139
Period size: 49 Copynumber: 2.6 Consensus size: 48
97348700 CAATATATAA
97348710 ATAAATT-TTAAAATAT-TAAAAATTATAAAAATAGTAAAAAAATTAT
1 ATAAATTCTTAAAATATGTAAAAATTATAAAAATAGTAAAAAAATTAT
* * *
97348756 A-AACATTCTTAAAAAATGTAAAAAGTTGTAAAAATTA-TAAAAAAATTGTT
1 ATAA-ATTCTTAAAATATGTAAAAA-TTATAAAAA-TAGTAAAAAAATT-AT
*
97348806 ATAAATTCTT-AAATTTGTAAAAATTAT
1 ATAAATTCTTAAAATATGTAAAAATTAT
97348833 TTTAAAATAT
Statistics
Matches: 64, Mismatches: 6, Indels: 12
0.78 0.07 0.15
Matches are distributed among these distances:
45 2 0.03
46 4 0.06
47 8 0.12
48 9 0.14
49 29 0.45
50 10 0.16
51 2 0.03
ACGTcount: A:0.57, C:0.02, G:0.05, T:0.36
Consensus pattern (48 bp):
ATAAATTCTTAAAATATGTAAAAATTATAAAAATAGTAAAAAAATTAT
Found at i:97348838 original size:28 final size:28
Alignment explanation
Indices: 97348796--97348868 Score: 71
Period size: 28 Copynumber: 2.7 Consensus size: 28
97348786 AAAATTATAA
* * * *
97348796 AAAAATTGTTATAAATTCTTAAAT-TTGT
1 AAAAATTATTATAAAATATAAAATATT-T
*
97348824 AAAAATTATTTTAAAATATAAAATATTT
1 AAAAATTATTATAAAATATAAAATATTT
97348852 AAAAATTA-TA-AAAATAT
1 AAAAATTATTATAAAATAT
97348869 TTAAGCAGTT
Statistics
Matches: 38, Mismatches: 6, Indels: 4
0.79 0.12 0.08
Matches are distributed among these distances:
26 7 0.18
27 1 0.03
28 28 0.74
29 2 0.05
ACGTcount: A:0.55, C:0.01, G:0.03, T:0.41
Consensus pattern (28 bp):
AAAAATTATTATAAAATATAAAATATTT
Found at i:97348856 original size:17 final size:19
Alignment explanation
Indices: 97348823--97348872 Score: 68
Period size: 19 Copynumber: 2.7 Consensus size: 19
97348813 CTTAAATTTG
*
97348823 TAAAAATTATTTTAAAA-TA
1 TAAAAA-TATTTAAAAATTA
97348842 T-AAAATATTTAAAAATTA
1 TAAAAATATTTAAAAATTA
97348860 TAAAAATATTTAA
1 TAAAAATATTTAA
97348873 GCAGTTTAGT
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
17 9 0.32
18 7 0.25
19 12 0.43
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (19 bp):
TAAAAATATTTAAAAATTA
Found at i:97356328 original size:23 final size:22
Alignment explanation
Indices: 97356301--97356345 Score: 72
Period size: 23 Copynumber: 2.0 Consensus size: 22
97356291 ATTCACAGCA
*
97356301 GTGGTTCATGGTGGTTTCAGGTG
1 GTGGTTCATAGTGGTTTC-GGTG
97356324 GTGGTTCATAGTGGTTTCGGTG
1 GTGGTTCATAGTGGTTTCGGTG
97356346 CATGGACAAA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
22 4 0.19
23 17 0.81
ACGTcount: A:0.09, C:0.09, G:0.42, T:0.40
Consensus pattern (22 bp):
GTGGTTCATAGTGGTTTCGGTG
Found at i:97362479 original size:37 final size:37
Alignment explanation
Indices: 97362437--97362512 Score: 143
Period size: 37 Copynumber: 2.1 Consensus size: 37
97362427 ATCAATAGTA
*
97362437 GACCTTAACGTGGCTAAAAAGGTCTACCCAAAAGAAT
1 GACCTTAACATGGCTAAAAAGGTCTACCCAAAAGAAT
97362474 GACCTTAACATGGCTAAAAAGGTCTACCCAAAAGAAT
1 GACCTTAACATGGCTAAAAAGGTCTACCCAAAAGAAT
97362511 GA
1 GA
97362513 GTATTTCACG
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.42, C:0.21, G:0.18, T:0.18
Consensus pattern (37 bp):
GACCTTAACATGGCTAAAAAGGTCTACCCAAAAGAAT
Found at i:97366475 original size:42 final size:42
Alignment explanation
Indices: 97366364--97366519 Score: 197
Period size: 42 Copynumber: 3.7 Consensus size: 42
97366354 TACCATACCA
* * * *
97366364 ATGCCATATCCCAGATATGGTCTTACATG-GGATCTCGTATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAG-TCTCATATTG
* * *
97366406 ATGCCAATAGCCCAGCTATGGTCTTACACGAAGCCTCATATTG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
* *
97366449 ATGCCATATCCCAGATATAGTCTTACATGAAGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
*
97366491 ATGCCATATCCTAGATATGGTCTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
97366520 TAATCTTAGT
Statistics
Matches: 97, Mismatches: 15, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
42 63 0.65
43 33 0.34
44 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAGTCTCATATTG
Found at i:97366494 original size:85 final size:84
Alignment explanation
Indices: 97366364--97366519 Score: 224
Period size: 85 Copynumber: 1.8 Consensus size: 84
97366354 TACCATACCA
* * * *
97366364 ATGCCATATCCCAGATATGGTCTTACATGGGATCTCGTATCGATGCCAATAGCCCAGCTATGGTC
1 ATGCCATATCCCAGATATAGTCTTACATGAGATCTCATATCGATGCC-ATAGCCCAGATATGGTC
97366429 TTACACGAAGCCTCATATTG
65 TTACACGAAGCCTCATATTG
* * *
97366449 ATGCCATATCCCAGATATAGTCTTACATGA-AGTCTCATATTGATGCCATATCCTAGATATGGTC
1 ATGCCATATCCCAGATATAGTCTTACATGAGA-TCTCATATCGATGCCATAGCCCAGATATGGTC
97366513 TTACACG
65 TTACACG
97366520 TAATCTTAGT
Statistics
Matches: 63, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
84 22 0.35
85 41 0.65
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (84 bp):
ATGCCATATCCCAGATATAGTCTTACATGAGATCTCATATCGATGCCATAGCCCAGATATGGTCT
TACACGAAGCCTCATATTG
Found at i:97367506 original size:31 final size:31
Alignment explanation
Indices: 97367468--97367531 Score: 128
Period size: 31 Copynumber: 2.1 Consensus size: 31
97367458 TTGTCCAATA
97367468 ACTTAACCAATGGTTGTATTACCATTTAAGG
1 ACTTAACCAATGGTTGTATTACCATTTAAGG
97367499 ACTTAACCAATGGTTGTATTACCATTTAAGG
1 ACTTAACCAATGGTTGTATTACCATTTAAGG
97367530 AC
1 AC
97367532 CACCAATTTA
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (31 bp):
ACTTAACCAATGGTTGTATTACCATTTAAGG
Found at i:97371437 original size:25 final size:25
Alignment explanation
Indices: 97371409--97371458 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
97371399 TTTTGTATAT
97371409 TGGATTTTAATTATGAAATTTCTTA
1 TGGATTTTAATTATGAAATTTCTTA
97371434 TGGATTTTAATTATGAAATTTCTTA
1 TGGATTTTAATTATGAAATTTCTTA
97371459 CAATTAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.32, C:0.04, G:0.12, T:0.52
Consensus pattern (25 bp):
TGGATTTTAATTATGAAATTTCTTA
Found at i:97371716 original size:20 final size:20
Alignment explanation
Indices: 97371691--97371731 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 20
97371681 TTGTACGAGA
* *
97371691 TTGCACTTTGGTGCCTTTGT
1 TTGCACTTTAGTGCCTCTGT
97371711 TTGCACTTTAGTGCCTCTGT
1 TTGCACTTTAGTGCCTCTGT
97371731 T
1 T
97371732 AGCATTTCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.07, C:0.22, G:0.22, T:0.49
Consensus pattern (20 bp):
TTGCACTTTAGTGCCTCTGT
Found at i:97372857 original size:32 final size:32
Alignment explanation
Indices: 97372813--97372876 Score: 110
Period size: 32 Copynumber: 2.0 Consensus size: 32
97372803 CACAGATAGT
* *
97372813 TACACGATAATGTCCTTGAGCAACATGACCTC
1 TACACGACAATGTCCTTGAGCAAAATGACCTC
97372845 TACACGACAATGTCCTTGAGCAAAATGACCTC
1 TACACGACAATGTCCTTGAGCAAAATGACCTC
97372877 GGCTCTGTCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (32 bp):
TACACGACAATGTCCTTGAGCAAAATGACCTC
Found at i:97377788 original size:19 final size:19
Alignment explanation
Indices: 97377752--97377788 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
97377742 TAACTAGGCT
* *
97377752 TTAATTAAGTGAATTTAGC
1 TTAATTAAGAGAAATTAGC
97377771 TTAATTAAGAGAAATTAG
1 TTAATTAAGAGAAATTAG
97377789 GAAAAATAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.43, C:0.03, G:0.16, T:0.38
Consensus pattern (19 bp):
TTAATTAAGAGAAATTAGC
Found at i:97379271 original size:15 final size:15
Alignment explanation
Indices: 97379234--97379290 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
97379224 CGATGAATTT
* *
97379234 ATTGAATTTATATTA
1 ATTGAAATTATATTG
* *
97379249 ATTAAAATTATTTTG
1 ATTGAAATTATATTG
97379264 ATTGAAATTATATTG
1 ATTGAAATTATATTG
97379279 ATTG-AATTATAT
1 ATTGAAATTATAT
97379291 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 8 0.22
15 28 0.78
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:97380371 original size:15 final size:15
Alignment explanation
Indices: 97380334--97380390 Score: 71
Period size: 15 Copynumber: 3.9 Consensus size: 15
97380324 CGATGAATTT
* *
97380334 ATTGAATTTATATTA
1 ATTGAAATTATATTG
* *
97380349 ATTAAAATTATTTTG
1 ATTGAAATTATATTG
97380364 ATTGAAATTATATTG
1 ATTGAAATTATATTG
97380379 ATTG-AATTATAT
1 ATTGAAATTATAT
97380391 AATATATATG
Statistics
Matches: 36, Mismatches: 6, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
14 8 0.22
15 28 0.78
ACGTcount: A:0.40, C:0.00, G:0.09, T:0.51
Consensus pattern (15 bp):
ATTGAAATTATATTG
Found at i:97381045 original size:19 final size:20
Alignment explanation
Indices: 97381021--97381062 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 20
97381011 ATGAAACGAG
97381021 AAATTGA-AT-TGAGAATTGA
1 AAATTGAGATATGAG-ATTGA
97381040 AAATTGAGATATGAGATTGA
1 AAATTGAGATATGAGATTGA
97381060 AAA
1 AAA
97381063 CATGAATCAA
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 7 0.33
20 10 0.48
21 4 0.19
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (20 bp):
AAATTGAGATATGAGATTGA
Found at i:97381610 original size:14 final size:15
Alignment explanation
Indices: 97381583--97381612 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
97381573 GTAAAGTATT
97381583 TTGATTGAAATTATA
1 TTGATTGAAATTATA
97381598 TTGATTG-AATTATA
1 TTGATTGAAATTATA
97381612 T
1 T
97381613 AATATATATG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 8 0.53
15 7 0.47
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (15 bp):
TTGATTGAAATTATA
Found at i:97391182 original size:56 final size:55
Alignment explanation
Indices: 97391119--97391321 Score: 216
Period size: 56 Copynumber: 3.6 Consensus size: 55
97391109 TTTCGGGTCC
* *
97391119 TAATTTTTTTTTTTGGTTTTAGGACACTAATGGCCAGCACCAACTTTATCAGA-T
1 TAATTTTTTTTTTTGGTTTTAGGACACTGATGGCCAGCACCAAATTTATCAGATT
* * *
97391173 TAA--TTTTTTTTTGGTTCTAGGACACTGATGGTC-GACACCAATTTTATCAGATT
1 TAATTTTTTTTTTTGGTTTTAGGACACTGATGGCCAG-CACCAAATTTATCAGATT
* * *
97391226 TAATTTTTTTTTTTTGGTTTTGGGACATTGATGGCCAGCACCAAATTTATCAAATT
1 TAA-TTTTTTTTTTTGGTTTTAGGACACTGATGGCCAGCACCAAATTTATCAGATT
* * *
97391282 TAAAAATATTCTTTTTTTTTGTTTTGGGATACTGATGGCC
1 T---AAT-TT-TTTTTTTTGGTTTTAGGACACTGATGGCC
97391322 CGTACCAAGT
Statistics
Matches: 125, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
51 1 0.01
52 42 0.34
53 4 0.03
54 3 0.02
56 43 0.34
57 1 0.01
58 1 0.01
59 4 0.03
60 26 0.21
ACGTcount: A:0.25, C:0.14, G:0.16, T:0.45
Consensus pattern (55 bp):
TAATTTTTTTTTTTGGTTTTAGGACACTGATGGCCAGCACCAAATTTATCAGATT
Found at i:97391231 original size:53 final size:52
Alignment explanation
Indices: 97391124--97391277 Score: 175
Period size: 52 Copynumber: 2.9 Consensus size: 52
97391114 GGTCCTAATT
*
97391124 TTTTTTTTTGGTTTTAGGACACTAATGGCCAGCACCAACTTTATCAGATTAA
1 TTTTTTTTTGGTTCTAGGACACTAATGGCCAGCACCAACTTTATCAGATTAA
* * *
97391176 TTTTTTTTTGGTTCTAGGACACTGATGGTC-GACACCAATTTTATCAGATTTAA
1 TTTTTTTTTGGTTCTAGGACACTAATGGCCAG-CACCAACTTTATCAGA-TTAA
* * * * *
97391229 TTTTTTTTTTTTGGTTTTGGGACATTGATGGCCAGCACCAAATTTATCA
1 ---TTTTTTTTTGGTTCTAGGACACTAATGGCCAGCACCAACTTTATCA
97391278 AATTTAAAAA
Statistics
Matches: 87, Mismatches: 9, Indels: 8
0.84 0.09 0.08
Matches are distributed among these distances:
51 1 0.01
52 42 0.48
53 4 0.05
56 39 0.45
57 1 0.01
ACGTcount: A:0.24, C:0.16, G:0.17, T:0.44
Consensus pattern (52 bp):
TTTTTTTTTGGTTCTAGGACACTAATGGCCAGCACCAACTTTATCAGATTAA
Found at i:97392015 original size:88 final size:89
Alignment explanation
Indices: 97391796--97392018 Score: 299
Period size: 89 Copynumber: 2.5 Consensus size: 89
97391786 ATTCAAAATT
* **
97391796 TTTGTATTATTTTTGTATCTATAAATCAAATTTAG-TCTGTATTATTTGTTGTTCGAATTTTATA
1 TTTGTATT-TTCTTGTATCTATAAATTTAATTTAGTTC-GTATTATTTGTTGTTCGAATTTTATA
* *
97391860 TTTTCATGTATTAATTTTTTAGAATG
64 TTTTCATGTATTAATATTCTAGAATG
* * *
97391886 TTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTTTGTATTATTTGTTGTTCGAATTTTATATT
1 TTTGTATTTTCTTGTATCTATAAATTTAATTTAGTTCGTATTATTTGTTGTTCGAATTTTATATT
* *
97391951 TTCGTGT-TTAATATTCTAGATTG
66 TTCATGTATTAATATTCTAGAATG
*
97391974 TTTGTATTTTCTTGTATTTATAAATTTAATTT-GTTGCGTATTATT
1 TTTGTATTTTCTTGTATCTATAAATTTAATTTAGTT-CGTATTATT
97392019 AATTTTTCAA
Statistics
Matches: 119, Mismatches: 12, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
87 3 0.03
88 50 0.42
89 57 0.48
90 9 0.08
ACGTcount: A:0.24, C:0.05, G:0.12, T:0.59
Consensus pattern (89 bp):
TTTGTATTTTCTTGTATCTATAAATTTAATTTAGTTCGTATTATTTGTTGTTCGAATTTTATATT
TTCATGTATTAATATTCTAGAATG
Found at i:97392037 original size:88 final size:89
Alignment explanation
Indices: 97391796--97392039 Score: 269
Period size: 88 Copynumber: 2.7 Consensus size: 89
97391786 ATTCAAAATT
* ** ** *
97391796 TTTGTATTATTTTTGTATCTATAAATCAAATTTAG-TCTGTATTATTTGTTGTTCGAATTTTATA
1 TTTGTATT-TTCTTGTATCTATAAATTTAATTTAGTTC-GTATTATTAATTGTTCAAATTTTATA
* *
97391860 TTTTCATGTATTAATTTTTTAGAATG
64 TTTTCATGTATTAATATTCTAGAATG
* * * ** *
97391886 TTTGTATTTTTTTGTATCTGTAAATTTAATTTAGTTTGTATTATTTGTTGTTCGAATTTTATATT
1 TTTGTATTTTCTTGTATCTATAAATTTAATTTAGTTCGTATTATTAATTGTTCAAATTTTATATT
* *
97391951 TTCGTGT-TTAATATTCTAGATTG
66 TTCATGTATTAATATTCTAGAATG
* * *
97391974 TTTGTATTTTCTTGTATTTATAAATTTAATTT-GTTGCGTATTATTAATTTTTCAAATTATATAT
1 TTTGTATTTTCTTGTATCTATAAATTTAATTTAGTT-CGTATTATTAATTGTTCAAATTTTATAT
97392038 TT
65 TT
97392040 ATTTTATTAA
Statistics
Matches: 135, Mismatches: 17, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
87 3 0.02
88 66 0.49
89 57 0.42
90 9 0.07
ACGTcount: A:0.25, C:0.05, G:0.11, T:0.59
Consensus pattern (89 bp):
TTTGTATTTTCTTGTATCTATAAATTTAATTTAGTTCGTATTATTAATTGTTCAAATTTTATATT
TTCATGTATTAATATTCTAGAATG
Found at i:97393373 original size:20 final size:20
Alignment explanation
Indices: 97393344--97393386 Score: 52
Period size: 20 Copynumber: 2.1 Consensus size: 20
97393334 TGCCAATCTT
* *
97393344 TTTTTTTCATTTCAATTT-AA
1 TTTTTCTCATGTC-ATTTGAA
97393364 TTTTTCTCATGTCATTTGAA
1 TTTTTCTCATGTCATTTGAA
97393384 TTT
1 TTT
97393387 CATTTCAACC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
19 4 0.20
20 16 0.80
ACGTcount: A:0.21, C:0.12, G:0.05, T:0.63
Consensus pattern (20 bp):
TTTTTCTCATGTCATTTGAA
Found at i:97393432 original size:32 final size:32
Alignment explanation
Indices: 97393365--97393425 Score: 104
Period size: 32 Copynumber: 1.9 Consensus size: 32
97393355 TCAATTTAAT
97393365 TTTTCTCATGTCATTTGAATTTCATTTCAACC
1 TTTTCTCATGTCATTTGAATTTCATTTCAACC
* *
97393397 TTTTCTCATGTGATTTGAATTTTATTTCA
1 TTTTCTCATGTCATTTGAATTTCATTTCA
97393426 CTCTTTTTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
32 27 1.00
ACGTcount: A:0.21, C:0.16, G:0.08, T:0.54
Consensus pattern (32 bp):
TTTTCTCATGTCATTTGAATTTCATTTCAACC
Found at i:97393645 original size:17 final size:17
Alignment explanation
Indices: 97393623--97393656 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
97393613 TTTTAATATT
97393623 ATTTGAATTTCATTTCA
1 ATTTGAATTTCATTTCA
97393640 ATTTGAATTTCATTTCA
1 ATTTGAATTTCATTTCA
97393657 CTTTTTTTTC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.29, C:0.12, G:0.06, T:0.53
Consensus pattern (17 bp):
ATTTGAATTTCATTTCA
Found at i:97393710 original size:16 final size:16
Alignment explanation
Indices: 97393686--97393724 Score: 51
Period size: 16 Copynumber: 2.4 Consensus size: 16
97393676 TAAAAAATCA
*
97393686 TTTTGTCATGTCAATT
1 TTTTTTCATGTCAATT
*
97393702 TTTTTTCATTTCAATT
1 TTTTTTCATGTCAATT
97393718 TCTTTTT
1 T-TTTTT
97393725 AAATTTCATT
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
16 15 0.75
17 5 0.25
ACGTcount: A:0.15, C:0.13, G:0.05, T:0.67
Consensus pattern (16 bp):
TTTTTTCATGTCAATT
Found at i:97393756 original size:23 final size:21
Alignment explanation
Indices: 97393700--97393758 Score: 64
Period size: 23 Copynumber: 2.6 Consensus size: 21
97393690 GTCATGTCAA
97393700 TTTTTTTTCATTTCAATTTCT
1 TTTTTTTTCATTTCAATTTCT
* *
97393721 TTTTAAATTTCATTTGAATTTCCT
1 TTTT--TTTTCATTTCAATTT-CT
97393745 TTTTTTTCTCATTT
1 TTTTTTT-TCATTT
97393759 TATTTGAAAT
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
21 4 0.13
22 2 0.06
23 19 0.61
24 6 0.19
ACGTcount: A:0.17, C:0.14, G:0.02, T:0.68
Consensus pattern (21 bp):
TTTTTTTTCATTTCAATTTCT
Found at i:97393764 original size:120 final size:118
Alignment explanation
Indices: 97393430--97393806 Score: 386
Period size: 120 Copynumber: 3.2 Consensus size: 118
97393420 ATTTCACTCT
* *
97393430 TTTTTAAATTAAAAACTTCATTTCTCATGTCAATTTTTTTTTTGTAATTTCAATTTCTTTTTAAA
1 TTTTT-AATTAAAAACTTCATTTATCATGTCAA---TTTTTTT-TCATTTCAATTTCTTTTTAAA
* * *
97393495 ATTCATTTGAATTTAATTTTCTTTCTC----A-TT-AATTTCATTTCACTTTTTTTTTA
61 TTTCATTTGAATTT-ATTTTATTTCTCATTTATTTGAATTTCATTTCACTTTTTTTTCA
*
97393548 TTTTTAATTAAAAACTTCATTTATCATGTCAA-TTTTTTTCAGTTCAATTTC-TTTTAAATTTCA
1 TTTTTAATTAAAAACTTCATTTATCATGTCAATTTTTTTTCATTTCAATTTCTTTTTAAATTTCA
* * * *
97393611 TTTTTTAATATTATTTGAATT-TCATTTCAATTTGAATTTCATTTCACTTTTTTTTCC
66 --TTTGAAT-TTATTTTATTTCTCATTT--ATTTGAATTTCATTTCACTTTTTTTTCA
* *
97393668 TTTTTAATTAAAAA-ATCATTTTGTCATGTCAATTTTTTTTCATTTCAATTTCTTTTTAAATTTC
1 TTTTTAATTAAAAACTTCA-TTTATCATGTCAATTTTTTTTCATTTCAATTTCTTTTTAAATTTC
* * *
97393732 ATTTGAATTTCCTTTTTTTTCTCATTTTATTTGAAATTT-ATTTCAC--TTTTTTCT
65 ATTTGAATTT-ATTTTATTTCTCA-TTTATTTG-AATTTCATTTCACTTTTTTTTCA
97393786 TTTTTAATT-AAAACTTCATTT
1 TTTTTAATTAAAAACTTCATTT
97393807 GAATTCCATT
Statistics
Matches: 220, Mismatches: 20, Indels: 39
0.79 0.07 0.14
Matches are distributed among these distances:
111 11 0.05
112 13 0.06
113 18 0.08
114 2 0.01
117 33 0.15
118 25 0.11
119 7 0.03
120 70 0.32
121 26 0.12
122 15 0.07
ACGTcount: A:0.26, C:0.12, G:0.03, T:0.59
Consensus pattern (118 bp):
TTTTTAATTAAAAACTTCATTTATCATGTCAATTTTTTTTCATTTCAATTTCTTTTTAAATTTCA
TTTGAATTTATTTTATTTCTCATTTATTTGAATTTCATTTCACTTTTTTTTCA
Found at i:97393820 original size:38 final size:39
Alignment explanation
Indices: 97393778--97393917 Score: 111
Period size: 39 Copynumber: 3.3 Consensus size: 39
97393768 TTTATTTCAC
97393778 TTTTTTC-TTTTTTAATTAAAACTTCATTTGAATTCCATT
1 TTTTTTCTTTTTTTAATTAAAACTTCATTTGAATTCCA-T
* * * * *
97393817 TTTTTCTCATTTTATTTGAATTTCATTTCAATTTCAATTTCATTTCACTT
1 TTTTT-TC-TTTT-TTT-AA-TT-A---AAACTTC-ATTTGAATTC-CAT
*
97393867 TTTTTTCTTTTTTTAATTAAAACTTCATTTGAATTTCAT
1 TTTTTTCTTTTTTTAATTAAAACTTCATTTGAATTCCAT
97393906 TTTTTTCTTTTT
1 TTTTTTCTTTTT
97393918 CAATTCAATT
Statistics
Matches: 78, Mismatches: 11, Indels: 24
0.69 0.10 0.21
Matches are distributed among these distances:
39 19 0.24
40 9 0.12
41 5 0.06
42 3 0.04
43 3 0.04
44 3 0.04
45 4 0.05
46 3 0.04
47 3 0.04
48 4 0.05
49 7 0.09
50 14 0.18
51 1 0.01
ACGTcount: A:0.22, C:0.13, G:0.02, T:0.63
Consensus pattern (39 bp):
TTTTTTCTTTTTTTAATTAAAACTTCATTTGAATTCCAT
Found at i:97393855 original size:17 final size:17
Alignment explanation
Indices: 97393830--97393863 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
97393820 TTCTCATTTT
*
97393830 ATTTGAATTTCATTTCA
1 ATTTCAATTTCATTTCA
97393847 ATTTCAATTTCATTTCA
1 ATTTCAATTTCATTTCA
97393864 CTTTTTTTTC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.29, C:0.15, G:0.03, T:0.53
Consensus pattern (17 bp):
ATTTCAATTTCATTTCA
Found at i:97394074 original size:17 final size:17
Alignment explanation
Indices: 97394054--97394097 Score: 61
Period size: 17 Copynumber: 2.6 Consensus size: 17
97394044 TTTTAAATAT
*
97394054 ATTTTTATTTTAATTTC
1 ATTTTAATTTTAATTTC
* *
97394071 ATTTTAAATATAATTTC
1 ATTTTAATTTTAATTTC
97394088 ATTTTAATTT
1 ATTTTAATTT
97394098 CATTTCAAGT
Statistics
Matches: 22, Mismatches: 5, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
17 22 1.00
ACGTcount: A:0.32, C:0.05, G:0.00, T:0.64
Consensus pattern (17 bp):
ATTTTAATTTTAATTTC
Found at i:97394080 original size:28 final size:28
Alignment explanation
Indices: 97394038--97394102 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
97394028 TCAATATTTT
* *
97394038 TTTCATTTTTAAATATATTTTTATTTTAA
1 TTTCA-TTTTAAATATAATTTCATTTTAA
97394067 TTTCATTTTAAATATAATTTCATTTTAA
1 TTTCATTTTAAATATAATTTCATTTTAA
97394095 TTTCATTT
1 TTTCATTT
97394103 CAAGTACAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
28 29 0.85
29 5 0.15
ACGTcount: A:0.31, C:0.06, G:0.00, T:0.63
Consensus pattern (28 bp):
TTTCATTTTAAATATAATTTCATTTTAA
Found at i:97394113 original size:28 final size:28
Alignment explanation
Indices: 97394060--97394114 Score: 83
Period size: 28 Copynumber: 2.0 Consensus size: 28
97394050 ATATATTTTT
* *
97394060 ATTTTAATTTCATTTTAAATATAATTTC
1 ATTTTAATTTCATTTCAAATACAATTTC
*
97394088 ATTTTAATTTCATTTCAAGTACAATTT
1 ATTTTAATTTCATTTCAAATACAATTT
97394115 GAATTTCAAT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.35, C:0.09, G:0.02, T:0.55
Consensus pattern (28 bp):
ATTTTAATTTCATTTCAAATACAATTTC
Found at i:97394317 original size:6 final size:6
Alignment explanation
Indices: 97394308--97394358 Score: 52
Period size: 6 Copynumber: 8.7 Consensus size: 6
97394298 ATATAAATTC
* * *
97394308 ATTTCA ATTTCA AATTGA ATTTCA A-TTCA A-TACA ACTTTCA ATTTCA
1 ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA ATTTCA A-TTTCA ATTTCA
97394355 ATTT
1 ATTT
97394359 TTTTATATAT
Statistics
Matches: 37, Mismatches: 6, Indels: 4
0.79 0.13 0.09
Matches are distributed among these distances:
5 9 0.24
6 24 0.65
7 4 0.11
ACGTcount: A:0.37, C:0.16, G:0.02, T:0.45
Consensus pattern (6 bp):
ATTTCA
Found at i:97394331 original size:23 final size:23
Alignment explanation
Indices: 97394292--97394338 Score: 60
Period size: 23 Copynumber: 2.0 Consensus size: 23
97394282 TCTTTTTCTT
*
97394292 TTTCAAATATAAATTCATTTCAA
1 TTTCAAATATAAATTCAATTCAA
*
97394315 TTTCAAAT-TGAATTTCAATTCAA
1 TTTCAAATAT-AAATTCAATTCAA
97394338 T
1 T
97394339 ACAACTTTCA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
22 1 0.05
23 20 0.95
ACGTcount: A:0.40, C:0.13, G:0.02, T:0.45
Consensus pattern (23 bp):
TTTCAAATATAAATTCAATTCAA
Found at i:97397466 original size:117 final size:111
Alignment explanation
Indices: 97397337--97397547 Score: 280
Period size: 111 Copynumber: 1.8 Consensus size: 111
97397327 ACCTATATAT
* * * * *
97397337 ATCTGTTAAAGTTGGTGTCGGCTATCAGTGTCTCGGAACCAAAAAAATAAATTTTAATCTGATAA
1 ATCTGATAAAGTTGGTGCCGGCCATCAGTGTCCCAGAA-C--AAAAA-AAA--TTAATCTGATAA
* *
97397402 AGTTGGTATTGGC-CATCAGTGTCCCAAAACCAAAAAATATATATATTTTTAA
60 AGTTGGT-GTCGCTCATCAGTGTCCCAAAACCAAAAAATATATATATTTTTAA
*
97397454 ATCTGATAAAGTTGGTGCCGGCCATTAGTGTCCCAGAACAAAAAAAATTAATCTGATAAAGTTGG
1 ATCTGATAAAGTTGGTGCCGGCCATCAGTGTCCCAGAACAAAAAAAATTAATCTGATAAAGTTGG
97397519 TGTCGCTCATCAGTGTCCCAAAACCAAAA
66 TGTCGCTCATCAGTGTCCCAAAACCAAAA
97397548 GAAAAAATTT
Statistics
Matches: 85, Mismatches: 8, Indels: 8
0.84 0.08 0.08
Matches are distributed among these distances:
110 3 0.04
111 41 0.48
113 3 0.04
114 5 0.06
116 1 0.01
117 32 0.38
ACGTcount: A:0.36, C:0.17, G:0.18, T:0.29
Consensus pattern (111 bp):
ATCTGATAAAGTTGGTGCCGGCCATCAGTGTCCCAGAACAAAAAAAATTAATCTGATAAAGTTGG
TGTCGCTCATCAGTGTCCCAAAACCAAAAAATATATATATTTTTAA
Found at i:97397534 original size:50 final size:52
Alignment explanation
Indices: 97397453--97397552 Score: 143
Period size: 50 Copynumber: 2.0 Consensus size: 52
97397443 TATATTTTTA
* *
97397453 AATCTGATAAAGTTGGTGCCGGCCATTAGTGTCCCAGAA-CAAAA-AAAATT
1 AATCTGATAAAGTTGGTGCCGGCCATCAGTGTCCCAAAACCAAAAGAAAATT
*
97397503 AATCTGATAAAGTTGGTGTC-GCTCATCAGTGTCCCAAAACCAAAAGAAAA
1 AATCTGATAAAGTTGGTGCCGGC-CATCAGTGTCCCAAAACCAAAAGAAAA
97397553 AATTTTGGAA
Statistics
Matches: 44, Mismatches: 3, Indels: 4
0.86 0.06 0.08
Matches are distributed among these distances:
49 2 0.05
50 33 0.75
51 5 0.11
52 4 0.09
ACGTcount: A:0.39, C:0.19, G:0.19, T:0.23
Consensus pattern (52 bp):
AATCTGATAAAGTTGGTGCCGGCCATCAGTGTCCCAAAACCAAAAGAAAATT
Found at i:97409430 original size:17 final size:17
Alignment explanation
Indices: 97409408--97409450 Score: 52
Period size: 17 Copynumber: 2.6 Consensus size: 17
97409398 ATTTCATTTA
**
97409408 AAATGTCAATTTCCATC
1 AAATGTCAATTAACATC
*
97409425 AAATGTCCATTAACATC
1 AAATGTCAATTAACATC
97409442 AAAT-TCAAT
1 AAATGTCAAT
97409451 ACAATCATAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
16 4 0.18
17 18 0.82
ACGTcount: A:0.42, C:0.21, G:0.05, T:0.33
Consensus pattern (17 bp):
AAATGTCAATTAACATC
Found at i:97409703 original size:30 final size:29
Alignment explanation
Indices: 97409669--97409726 Score: 71
Period size: 30 Copynumber: 2.0 Consensus size: 29
97409659 TCAAAATCAT
* *
97409669 ATTTTGAAAAAATTACATTTTTGCCCCTAA
1 ATTTTGAAAAAAGTAC-CTTTTGCCCCTAA
**
97409699 ATTTTGTCAAAAGTACCTTTTGCCCCTA
1 ATTTTGAAAAAAGTACCTTTTGCCCCTA
97409727 GGCTCGTAAA
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
29 11 0.46
30 13 0.54
ACGTcount: A:0.31, C:0.21, G:0.09, T:0.40
Consensus pattern (29 bp):
ATTTTGAAAAAAGTACCTTTTGCCCCTAA
Found at i:97415172 original size:30 final size:30
Alignment explanation
Indices: 97415138--97415198 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
97415128 TCCTTAACTC
97415138 AAACTTTGGCAAAATTACAATTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
* * * *
97415168 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGCAAAATTACAATTTTGCCCCT
97415198 A
1 A
97415199 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGCAAAATTACAATTTTGCCCCT
Found at i:97430809 original size:48 final size:48
Alignment explanation
Indices: 97430749--97431064 Score: 445
Period size: 48 Copynumber: 6.6 Consensus size: 48
97430739 AAGTGTGCTA
* * ** *
97430749 GTGTAAGACCATGTGTGAGACATGGCATCGGTGATGATATATGTACCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
* * *
97430797 GTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATATGCGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
*
97430845 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGCGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
* *
97430893 GTGTAAGACCATGTCTGGGACATGGAATCGGCGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
* * * *
97430941 ATGTAAGACAATGTCAGAGACATGGCATCGACGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
* *
97430989 GTGTAAAACCATGTCTGGGACATGGCATCGATGATGATATATGTGCCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCC-T
* *
97431038 -TATAAGACCATATCTGGGACATGGCAT
1 GTGTAAGACCATGTCTGGGACATGGCAT
97431065 TGGTACTTTA
Statistics
Matches: 242, Mismatches: 25, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
48 241 1.00
49 1 0.00
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
Found at i:97430870 original size:96 final size:96
Alignment explanation
Indices: 97430700--97431064 Score: 459
Period size: 96 Copynumber: 3.8 Consensus size: 96
97430690 ATGAGATTCC
* * * *
97430700 GTGTAAGTCCACGTCTTGGACATGGCATCGGC-ATCTGAGA-AGTGTG-CTAGTGTAAGACCATG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGA--TGATATA-TGTGCCT-GTGTAAGACCATG
* ** *
97430762 TGTGAGACATGGCATCGGTGATGATATATGTACCT
62 TCTGAGACATGGCATCGACGATGATATATGTGCCT
* *
97430797 GTGTAAGACCATGTTTGGGACATGGCATCGGCGATGATATATGCGCCTGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
* *
97430862 GGACATGGCATCGACGATGATATATGCGCCT
66 AGACATGGCATCGACGATGATATATGTGCCT
* * * *
97430893 GTGTAAGACCATGTCTGGGACATGGAATCGGCGATGATATATGTGCCTATGTAAGACAATGTCAG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
97430958 AGACATGGCATCGACGATGATATATGTGCCT
66 AGACATGGCATCGACGATGATATATGTGCCT
* ** * *
97430989 GTGTAAAACCATGTCTGGGACATGGCATCGATGATGATATATGTGCCAT-TATAAGACCATATCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCC-TGTGTAAGACCATGTCT
*
97431053 GGGACATGGCAT
65 GAGACATGGCAT
97431065 TGGTACTTTA
Statistics
Matches: 235, Mismatches: 29, Indels: 9
0.86 0.11 0.03
Matches are distributed among these distances:
96 202 0.86
97 32 0.14
98 1 0.00
ACGTcount: A:0.27, C:0.18, G:0.28, T:0.27
Consensus pattern (96 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
AGACATGGCATCGACGATGATATATGTGCCT
Found at i:97434518 original size:14 final size:14
Alignment explanation
Indices: 97434495--97434529 Score: 61
Period size: 14 Copynumber: 2.5 Consensus size: 14
97434485 ATTGAACACG
*
97434495 AAAGAGTTTGAATT
1 AAAGATTTTGAATT
97434509 AAAGATTTTGAATT
1 AAAGATTTTGAATT
97434523 AAAGATT
1 AAAGATT
97434530 GAATCTTTAC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.17, T:0.37
Consensus pattern (14 bp):
AAAGATTTTGAATT
Found at i:97438728 original size:48 final size:48
Alignment explanation
Indices: 97438618--97438932 Score: 374
Period size: 48 Copynumber: 6.6 Consensus size: 48
97438608 ATGAGATTCC
* * * *
97438618 GTGTAAGTCTATGTCTGGGACATGGCATCAGCATCAGA-GA-A-GTGTGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATC-G-A-C-GATGATATATGTGCCT
*
97438667 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCTT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
*
97438715 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
* * *
97438763 GTGTAAGACCATGTCTGGGACATCGC--CGATGATAATATATGTGCCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
97438809 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCC-T
* * * **
97438858 -TGTAAGACCATGTCTGGGACATGGCATTGTCGATGATATGTG-GATT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
* * *
97438904 CATGCAAGACCAAGTCTGGGACATGGCAT
1 -GTGTAAGACCATGTCTGGGACATGGCAT
97438933 TGGTACTTTA
Statistics
Matches: 237, Mismatches: 21, Indels: 17
0.86 0.08 0.06
Matches are distributed among these distances:
45 2 0.01
46 46 0.19
47 3 0.01
48 158 0.67
49 28 0.12
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (48 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCT
Found at i:97438826 original size:94 final size:95
Alignment explanation
Indices: 97438618--97438879 Score: 361
Period size: 94 Copynumber: 2.7 Consensus size: 95
97438608 ATGAGATTCC
* * * * *
97438618 GTGTAAGTCTATGTCTGGGACATGGCATCAGC-ATCAGAGA-AGTGTGCCAGTGTAAGACCATGT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGAT--GATATA-TGTGCCTGTGTAAGACCATGT
* * *
97438681 CTGGGACATGGCATCGACGATGATATATGTGCTT
63 CTGGGACATCGCA-CGACGATAATATATGTGCCT
97438715 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
*
97438780 GGACATCGC-CGATGATAATATATGTGCCT
66 GGACATCGCACGACGATAATATATGTGCCT
*
97438809 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAT-TGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCC-TGTGTAAGACCATGTCT
97438873 GGGACAT
65 GGGACAT
97438880 GGCATTGTCG
Statistics
Matches: 152, Mismatches: 10, Indels: 9
0.89 0.06 0.05
Matches are distributed among these distances:
94 85 0.56
95 1 0.01
96 34 0.22
97 30 0.20
98 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (95 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTG
GGACATCGCACGACGATAATATATGTGCCT
Found at i:97438897 original size:94 final size:94
Alignment explanation
Indices: 97438618--97438932 Score: 347
Period size: 94 Copynumber: 3.3 Consensus size: 94
97438608 ATGAGATTCC
* * * *
97438618 GTGTAAGTCTATGTCTGGGACATGGCATCAGCATCAGA-GA-A-GTGTGCCAGTGTAAGACCATG
1 GTGTAAGACCATGTCTGGGACATGGCATC-G-A-C-GATGATATATGTGCCATTGTAAGACCATG
* *
97438680 TCTGGGACATGGCATCGACGATGATATATGTGCTT
62 TCTGGGACATGGCATTGTCGATG--ATATGTGCTT
*
97438715 GTGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCC-TGTGTAAGACCATGTCT
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAT-TGTAAGACCATGTCT
* * *
97438779 GGGACATCGCCGA-TGAT-AAT-ATATGTGCCT
65 GGGACAT-GGC-ATTG-TCGATGATATGTGCTT
97438809 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCATTGTAAGACCATGTCTG
1 GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCATTGTAAGACCATGTCTG
*
97438874 GGACATGGCATTGTCGATGATATGTGGATT
66 GGACATGGCATTGTCGATGATATGT-GCTT
* * *
97438904 CATGCAAGACCAAGTCTGGGACATGGCAT
1 -GTGTAAGACCATGTCTGGGACATGGCAT
97438933 TGGTACTTTA
Statistics
Matches: 187, Mismatches: 18, Indels: 27
0.81 0.08 0.12
Matches are distributed among these distances:
92 2 0.01
93 8 0.04
94 86 0.46
95 4 0.02
96 54 0.29
97 32 0.17
98 1 0.01
ACGTcount: A:0.26, C:0.18, G:0.29, T:0.27
Consensus pattern (94 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCATTGTAAGACCATGTCTG
GGACATGGCATTGTCGATGATATGTGCTT
Found at i:97438921 original size:142 final size:142
Alignment explanation
Indices: 97438660--97438927 Score: 414
Period size: 142 Copynumber: 1.9 Consensus size: 142
97438650 ATCAGAGAAG
*
97438660 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCTTGTGTAAGACC
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCATGTGTAAGACC
* * * *
97438725 ATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTGTGTAAGACCATGTCTGGGACATCGCC
66 ATGTCTGGGACATGGCATCGGCGATGATATATGTGACTATGCAAGACCAAGTCTGGGACATCGCC
97438790 GATGATAATATA
131 GATGATAATATA
*
97438802 TGTGCCTGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCCAT-TGTAAGAC
1 TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTG-CATGTGTAAGAC
* * * *
97438866 CATGTCTGGGACATGGCATTGTCGATGATATGTG-GATTCATGCAAGACCAAGTCTGGGACAT
65 CATGTCTGGGACATGGCATCGGCGATGATATATGTGACT-ATGCAAGACCAAGTCTGGGACAT
97438928 GGCATTGGTA
Statistics
Matches: 114, Mismatches: 10, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
141 2 0.02
142 110 0.96
143 2 0.02
ACGTcount: A:0.25, C:0.18, G:0.29, T:0.28
Consensus pattern (142 bp):
TGTGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACGATGATATATGTGCATGTGTAAGACC
ATGTCTGGGACATGGCATCGGCGATGATATATGTGACTATGCAAGACCAAGTCTGGGACATCGCC
GATGATAATATA
Found at i:97444476 original size:70 final size:70
Alignment explanation
Indices: 97444363--97444500 Score: 240
Period size: 70 Copynumber: 2.0 Consensus size: 70
97444353 AAAGTGATAA
* *
97444363 ACAAACAGGAAGTGAGTTTTCATAACTCAGTCTGTAACTTTAAAGAAAACAAAATTATAAACTTA
1 ACAAACAAGAAGTGAGTTTTCATAACTCAGCCTGTAACTTTAAAGAAAACAAAATTATAAACTTA
97444428 ATTAG
66 ATTAG
* *
97444433 ACAAACAAGAAGTGAGTTTTCATAACTCCGCCTGTAACTTTAAAGAAAACAAAATTATAGACTTA
1 ACAAACAAGAAGTGAGTTTTCATAACTCAGCCTGTAACTTTAAAGAAAACAAAATTATAAACTTA
97444498 ATT
66 ATT
97444501 TCAGATTTAT
Statistics
Matches: 64, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
70 64 1.00
ACGTcount: A:0.45, C:0.14, G:0.12, T:0.28
Consensus pattern (70 bp):
ACAAACAAGAAGTGAGTTTTCATAACTCAGCCTGTAACTTTAAAGAAAACAAAATTATAAACTTA
ATTAG
Found at i:97475595 original size:47 final size:45
Alignment explanation
Indices: 97475390--97475715 Score: 232
Period size: 47 Copynumber: 6.9 Consensus size: 45
97475380 GGATAAGTTA
*
97475390 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATCATCGAGG
1 CCGATG-CATGTCCCAGACA-GGTCTTACACTGGC-ATCATC-TCGAGG
* * * *
97475439 CCGATGCCATGTCCCAGACATGGTCCTACACTAGC-TCCCGTATAT-GCATG
1 CCGATG-CATGTCCCAGACA-GGTCTTACACTGGCAT--C--ATCTCG-AGG
* * *
97475489 CTGATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTCTC-A-G
1 CCGATGCATGTCCCAGACAGGTCTTACACTGGCATC-A-TCTCGAGG
*
97475533 CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGG
1 CCGATGCATGTCCCAGACAGGTCTTACACTGGC-ATCATC-TCGAGG
* * * * * *
97475580 CTGATGCATGTCCCAGACATGCCTTACAGTGGCACTCATCTCTATG
1 CCGATGCATGTCCCAGACAGGTCTTACACTGGCA-TCATCTCGAGG
* * *
97475626 CCAATGCCATGTCCCAGACATGGTCTTACACTGGCACTCATAAT-GTGG
1 CCGATG-CATGTCCCAGACA-GGTCTTACACTGGCA-TCAT-CTCGAGG
* * *
97475674 GCGATGCATGTCCCAGACATGTCTTAAACTGGCACTCATCTC
1 CCGATGCATGTCCCAGACAGGTCTTACACTGGCA-TCATCTC
97475716 TATGCCAATA
Statistics
Matches: 226, Mismatches: 33, Indels: 39
0.76 0.11 0.13
Matches are distributed among these distances:
44 33 0.15
45 7 0.03
46 32 0.14
47 62 0.27
48 34 0.15
49 48 0.21
50 8 0.04
51 2 0.01
ACGTcount: A:0.23, C:0.31, G:0.20, T:0.25
Consensus pattern (45 bp):
CCGATGCATGTCCCAGACAGGTCTTACACTGGCATCATCTCGAGG
Found at i:97475679 original size:141 final size:140
Alignment explanation
Indices: 97475390--97475706 Score: 340
Period size: 141 Copynumber: 2.2 Consensus size: 140
97475380 GGATAAGTTA
* *
97475390 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATCATCGAGGCCGATGCCATGTCCCA
1 CCGATG-CATGTCCCAGACA-CGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCA
* **
97475455 GACATGGTCCTACACTAGCTCCCGTATATGCATGCTGATGCATGTCCCAGACATGTCTTACACTA
64 GACATGGTCCTACACTAGCACCCG-ATATGCATGCCAATGCATGTCCCAGACATGTCTTACACTA
*
97475520 GCACAACTCTCAG
128 GCACAAATCTCAG
* *
97475533 CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCGTCGAGGCTGATG-CATGTCCCAGA
1 CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
* * * *
97475597 CAT-G-CCTTACAGTGGCACTC-ATCT-CTATGCCAATGCCATGTCCCAGACATGGTCTTACACT
66 CATGGTCC-TACACTAGCACCCGATATGC-ATGCCAATG-CATGTCCCAGACAT-GTCTTACACT
* * *
97475658 GGCACTCATAATGT-GG
127 AGCA--CA-AATCTCAG
* * *
97475674 GCGATGCATGTCCCAGACATGTCTTAAACTGGC
1 CCGATGCATGTCCCAGACACGTCTTACACTGGC
97475707 ACTCATCTCT
Statistics
Matches: 149, Mismatches: 18, Indels: 16
0.81 0.10 0.09
Matches are distributed among these distances:
136 1 0.01
137 10 0.07
138 16 0.11
139 23 0.15
140 14 0.09
141 63 0.42
142 16 0.11
143 6 0.04
ACGTcount: A:0.23, C:0.31, G:0.21, T:0.25
Consensus pattern (140 bp):
CCGATGCATGTCCCAGACACGTCTTACACTGGCTATCATCATCGAGGCCGATGCCATGTCCCAGA
CATGGTCCTACACTAGCACCCGATATGCATGCCAATGCATGTCCCAGACATGTCTTACACTAGCA
CAAATCTCAG
Found at i:97475690 original size:94 final size:94
Alignment explanation
Indices: 97475392--97475724 Score: 331
Period size: 94 Copynumber: 3.5 Consensus size: 94
97475382 ATAAGTTACC
* * * *
97475392 GATGCCATGTCCCAGACATGGTCTTACACTGGCTATTATCATCGAGGCCGATGCCATGTCCCAGA
1 GATG-CATGTCCCAGACAT-GTCTTACACTGGC-ATCATC-TCTATGCCAATGCCATGTCCCAGA
* * * * * ***
97475457 CATGGTCCTACACTAGCTCCCGTATATGCATGCT
62 CATGGTCTTACACTGGCACTCATA-ATGTGGGCT
* * *
97475491 GATGCATGTCCCAGACATGTCTTACACTAGCA-CAACTCTCA-GCCGATG-CATGTCCCAGACA-
1 GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCT-ATGCCAATGCCATGTCCCAGACAT
* *
97475552 CGTCTTACACTGGCTA-TCAT--CGTCGAGGCT
65 GGTCTTACACTGGC-ACTCATAATGT-G-GGCT
* *
97475582 GATGCATGTCCCAGACATGCCTTACAGTGGCACTCATCTCTATGCCAATGCCATGTCCCAGACAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTATGCCAATGCCATGTCCCAGACAT
97475647 GGTCTTACACTGGCACTCATAATGTGGGC-
65 GGTCTTACACTGGCACTCATAATGTGGGCT
*
97475676 GATGCATGTCCCAGACATGTCTTAAACTGGCACTCATCTCTATGCCAAT
1 GATGCATGTCCCAGACATGTCTTACACTGGCA-TCATCTCTATGCCAAT
97475725 ATTCTGTTTG
Statistics
Matches: 198, Mismatches: 24, Indels: 29
0.79 0.10 0.12
Matches are distributed among these distances:
89 1 0.01
91 32 0.16
92 14 0.07
93 25 0.13
94 69 0.35
95 23 0.12
96 2 0.01
97 14 0.07
98 14 0.07
99 4 0.02
ACGTcount: A:0.24, C:0.30, G:0.20, T:0.26
Consensus pattern (94 bp):
GATGCATGTCCCAGACATGTCTTACACTGGCATCATCTCTATGCCAATGCCATGTCCCAGACATG
GTCTTACACTGGCACTCATAATGTGGGCT
Found at i:97476429 original size:12 final size:12
Alignment explanation
Indices: 97476412--97476436 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
97476402 CAAAAATGTA
97476412 AAAATCATCAAG
1 AAAATCATCAAG
97476424 AAAATCATCAAG
1 AAAATCATCAAG
97476436 A
1 A
97476437 TCATTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:97487216 original size:14 final size:15
Alignment explanation
Indices: 97487197--97487226 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
97487187 TCTGACTTTA
97487197 TTATGTGTG-AATTT
1 TTATGTGTGAAATTT
97487211 TTATGTGTGAAATTT
1 TTATGTGTGAAATTT
97487226 T
1 T
97487227 CGTGCTTTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.23, C:0.00, G:0.20, T:0.57
Consensus pattern (15 bp):
TTATGTGTGAAATTT
Found at i:97489788 original size:46 final size:46
Alignment explanation
Indices: 97489721--97489941 Score: 415
Period size: 46 Copynumber: 4.8 Consensus size: 46
97489711 TGTAACCCGC
* * *
97489721 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGACGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
97489767 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
97489813 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
97489859 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
97489905 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
97489942 TGCTCAACCA
Statistics
Matches: 172, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 172 1.00
ACGTcount: A:0.30, C:0.29, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:97499097 original size:43 final size:42
Alignment explanation
Indices: 97499029--97499185 Score: 156
Period size: 43 Copynumber: 3.6 Consensus size: 42
97499019 AGCTCGTACA
* *
97499029 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* * *
97499072 ATGTCATTGTCCCAGACATGGTCTTACACGAAATAAAATA-CG
1 ATGCCA-TGTCCCAGACATGGTCTTACACGTAATCAAATATCG
* *
97499114 ATGCCGATGTTCCAGACATGGTCTTACACGTAAATCATAA-GTCG
1 ATGCC-ATGTCCCAGACATGGTCTTACACGT-AATCA-AATATCG
* * *
97499158 ATGCCAACGTCCTAGACGTGGTCTTACA
1 ATGCC-ATGTCCCAGACATGGTCTTACA
97499186 TGAAAACACA
Statistics
Matches: 94, Mismatches: 15, Indels: 9
0.80 0.13 0.08
Matches are distributed among these distances:
42 29 0.31
43 38 0.40
44 27 0.29
ACGTcount: A:0.31, C:0.24, G:0.19, T:0.27
Consensus pattern (42 bp):
ATGCCATGTCCCAGACATGGTCTTACACGTAATCAAATATCG
Found at i:97499185 original size:86 final size:85
Alignment explanation
Indices: 97499029--97499190 Score: 200
Period size: 86 Copynumber: 1.9 Consensus size: 85
97499019 AGCTCGTACA
* * * **
97499029 ATGCCAATGTCCCAGACGTGGTCTTACATGTAATCAAATATCGATGTCATTGTCCCAGACATGGT
1 ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGACATGGT
97499094 CTTACACGAAATAAAATACG
66 CTTACACGAAATAAAATACG
* * * * *
97499114 ATGCCGATGTTCCAGACATGGTCTTACACGTAAATCATAA-GTCGATGCCAACGTCCTAGACGTG
1 ATGCCAATGTCCCAGACATGGTCTTACACGT-AATCA-AATATCGATGCCAACGTCCCAGACATG
*
97499178 GTCTTACATGAAA
64 GTCTTACACGAAA
97499191 ACACATATCG
Statistics
Matches: 64, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
85 27 0.42
86 35 0.55
87 2 0.03
ACGTcount: A:0.31, C:0.23, G:0.19, T:0.27
Consensus pattern (85 bp):
ATGCCAATGTCCCAGACATGGTCTTACACGTAATCAAATATCGATGCCAACGTCCCAGACATGGT
CTTACACGAAATAAAATACG
Found at i:97505988 original size:43 final size:43
Alignment explanation
Indices: 97505927--97506049 Score: 110
Period size: 43 Copynumber: 2.9 Consensus size: 43
97505917 CCTAGACGTC
* *
97505927 GTCTTACATGTAATCAAATATCGATGCCACTGTCCCAAACAGG
1 GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAAACAGG
* * * * *
97505970 GTCTTACACGAAATCAAATAT-AATGTCGA-TGTCCTAGACATG
1 GTCTTACACGAAATCAAATATCGATG-CCACTGTCCCAAACAGG
*
97506012 GTCTTACACGTAAATCATAA-GTCGATGCCAAC-GTCCCA
1 GTCTTACACG-AAATCA-AATATCGATGCC-ACTGTCCCA
97506050 GATGTGGTCT
Statistics
Matches: 63, Mismatches: 11, Indels: 11
0.74 0.13 0.13
Matches are distributed among these distances:
42 23 0.37
43 29 0.46
44 11 0.17
ACGTcount: A:0.33, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
GTCTTACACGAAATCAAATATCGATGCCACTGTCCCAAACAGG
Found at i:97506016 original size:42 final size:43
Alignment explanation
Indices: 97505915--97506028 Score: 115
Period size: 43 Copynumber: 2.7 Consensus size: 43
97505905 CAGTGACAAC
* * * * *
97505915 GTCCTAGACGTCGTCTTACATGTAATCAAATATCGATGCCACT
1 GTCCTAGACATGGTCTTACACGAAATCAAATATCAATGCCACT
* * * *
97505958 GTCCCAAACAGGGTCTTACACGAAATCAAATAT-AATGTCGA-T
1 GTCCTAGACATGGTCTTACACGAAATCAAATATCAATG-CCACT
97506000 GTCCTAGACATGGTCTTACACGTAAATCA
1 GTCCTAGACATGGTCTTACACG-AAATCA
97506029 TAAGTCGATG
Statistics
Matches: 57, Mismatches: 12, Indels: 4
0.78 0.16 0.05
Matches are distributed among these distances:
42 23 0.40
43 34 0.60
ACGTcount: A:0.32, C:0.24, G:0.17, T:0.27
Consensus pattern (43 bp):
GTCCTAGACATGGTCTTACACGAAATCAAATATCAATGCCACT
Found at i:97509118 original size:24 final size:24
Alignment explanation
Indices: 97509046--97509121 Score: 116
Period size: 24 Copynumber: 3.2 Consensus size: 24
97509036 GAAAGTAATA
*
97509046 CGCCTGCTCCCGCTCAAGGGACAG
1 CGCCTGCTCCCGCTTAAGGGACAG
* * *
97509070 AGCTTGCTCCCACTTAAGGGACAG
1 CGCCTGCTCCCGCTTAAGGGACAG
97509094 CGCCTGCTCCCGCTTAAGGGACAG
1 CGCCTGCTCCCGCTTAAGGGACAG
97509118 CGCC
1 CGCC
97509122 ATCAGACTCT
Statistics
Matches: 45, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 45 1.00
ACGTcount: A:0.18, C:0.38, G:0.28, T:0.16
Consensus pattern (24 bp):
CGCCTGCTCCCGCTTAAGGGACAG
Found at i:97529734 original size:9 final size:9
Alignment explanation
Indices: 97529720--97529751 Score: 50
Period size: 9 Copynumber: 3.8 Consensus size: 9
97529710 TCTCTAACGC
97529720 CCCAAAAAT
1 CCCAAAAAT
97529729 CCC-AAAA-
1 CCCAAAAAT
97529736 CCCAAAAAT
1 CCCAAAAAT
97529745 CCCAAAA
1 CCCAAAA
97529752 TCCTAAACTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
7 3 0.14
8 8 0.38
9 10 0.48
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (9 bp):
CCCAAAAAT
Found at i:97529741 original size:16 final size:16
Alignment explanation
Indices: 97529720--97529751 Score: 64
Period size: 16 Copynumber: 2.0 Consensus size: 16
97529710 TCTCTAACGC
97529720 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
97529736 CCCAAAAATCCCAAAA
1 CCCAAAAATCCCAAAA
97529752 TCCTAAACTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.56, C:0.38, G:0.00, T:0.06
Consensus pattern (16 bp):
CCCAAAAATCCCAAAA
Found at i:97531297 original size:29 final size:28
Alignment explanation
Indices: 97531228--97531361 Score: 155
Period size: 29 Copynumber: 4.7 Consensus size: 28
97531218 ATAATGTGAT
* *
97531228 TTGGGCCGGATGGGCCATATAAATGAGA
1 TTGGGCCTGATGGGCCATATAAATGAAA
* *
97531256 TTGGGCCTAATGGGCCATATGAATGTAAA
1 TTGGGCCTGATGGGCCATATAAATG-AAA
97531285 TTGGGCCTGATGGGCCATATAAACGTG-AA
1 TTGGGCCTGATGGGCCATATAAA--TGAAA
* * *
97531314 TTGGGCCGGATGGGCCATTTAAATGAGA
1 TTGGGCCTGATGGGCCATATAAATGAAA
97531342 TTGGGCCT-AGTGGGCCATAT
1 TTGGGCCTGA-TGGGCCATAT
97531362 TCATGTATGT
Statistics
Matches: 90, Mismatches: 11, Indels: 10
0.81 0.10 0.09
Matches are distributed among these distances:
27 3 0.03
28 39 0.43
29 46 0.51
31 2 0.02
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (28 bp):
TTGGGCCTGATGGGCCATATAAATGAAA
Found at i:97531305 original size:57 final size:56
Alignment explanation
Indices: 97531228--97531361 Score: 164
Period size: 57 Copynumber: 2.4 Consensus size: 56
97531218 ATAATGTGAT
* * *
97531228 TTGGGCCGGATGGGCCATATAAA-TGAGATTGGGCCTAATGGGCCATATGAATGTAAA
1 TTGGGCCTGATGGGCCATATAAACTGA-ATTGGGCCGAATGGGCCATATAAATG-AAA
* * *
97531285 TTGGGCCTGATGGGCCATATAAACGTGAATTGGGCCGGATGGGCCATTTAAATGAGA
1 TTGGGCCTGATGGGCCATATAAAC-TGAATTGGGCCGAATGGGCCATATAAATGAAA
97531342 TTGGGCCT-AGTGGGCCATAT
1 TTGGGCCTGA-TGGGCCATAT
97531362 TCATGTATGT
Statistics
Matches: 68, Mismatches: 6, Indels: 6
0.85 0.08 0.08
Matches are distributed among these distances:
56 1 0.01
57 42 0.62
58 22 0.32
59 3 0.04
ACGTcount: A:0.26, C:0.16, G:0.33, T:0.25
Consensus pattern (56 bp):
TTGGGCCTGATGGGCCATATAAACTGAATTGGGCCGAATGGGCCATATAAATGAAA
Found at i:97532912 original size:40 final size:39
Alignment explanation
Indices: 97532868--97533052 Score: 246
Period size: 40 Copynumber: 4.7 Consensus size: 39
97532858 GCCACTAGCT
*
97532868 CAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
*
97532908 CAAATGCCTTCGGGACTTAGCCCGGTATAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
*
97532947 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-TATAGTAACTCGCA
* * ** * *
97532987 CGAATGCCTTCGGGACTTAGCCCGGAATTAGCCACTAGCT
1 CAAATGCCTTCGGGACTTAGCCCGGTA-TAGTAACTCGCA
97533027 CAAATG-CTCTCGGGACTTAGCCCGGT
1 CAAATGCCT-TCGGGACTTAGCCCGGT
97533053 TATCATCCGA
Statistics
Matches: 129, Mismatches: 13, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
39 40 0.31
40 89 0.69
ACGTcount: A:0.24, C:0.28, G:0.24, T:0.24
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGTATAGTAACTCGCA
Found at i:97532966 original size:79 final size:80
Alignment explanation
Indices: 97532861--97533055 Score: 268
Period size: 79 Copynumber: 2.5 Consensus size: 80
97532851 GGATATAGCC
* *
97532861 ACTAGCTCAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTTGCACAAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
97532926 AGCCCGGTA-TAATA
66 AGCCCGGAATTAACA
* * * *
97532940 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTAGCTCGCACGAATGCCTTCGGGACTT
1 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
* *
97533005 AGCCCGGAATTAGCC
66 AGCCCGGAATTAACA
*
97533020 ACTAGCTCAAATG-CTCTCGGGACTTAGCCCGGTTAT
1 ACTAGCACAAATGCCT-TCGGGACTTAGCCCGGTTAT
97533056 CATCCGAACA
Statistics
Matches: 101, Mismatches: 13, Indels: 3
0.86 0.11 0.03
Matches are distributed among these distances:
79 69 0.68
80 32 0.32
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (80 bp):
ACTAGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTT
AGCCCGGAATTAACA
Found at i:97535557 original size:40 final size:40
Alignment explanation
Indices: 97535502--97535712 Score: 239
Period size: 40 Copynumber: 5.3 Consensus size: 40
97535492 ATTTGAATGA
*
97535502 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
*
97535542 TATCCGGGCTAAGTCCCGAAGGCATTTATGCTAGTGATTT
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
* * *
97535582 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * *
97535622 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAG-TGATTT
* * * * * * *
97535662 TACCCGGGTTAAGACCCGAAGGCAATTGTGCTTGTGGTTA
1 TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
97535702 TATCC-GGCTAA
1 TATCCGGGCTAA
97535713 ATTCCGAAGA
Statistics
Matches: 156, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
39 7 0.04
40 146 0.94
41 3 0.02
ACGTcount: A:0.23, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTATGCTAGTGATTT
Found at i:97562153 original size:26 final size:26
Alignment explanation
Indices: 97562116--97562168 Score: 97
Period size: 26 Copynumber: 2.0 Consensus size: 26
97562106 TTTCACCTCT
97562116 TTCCCTTCCTCTAGGGCTACATTCTC
1 TTCCCTTCCTCTAGGGCTACATTCTC
*
97562142 TTCCCTTTCTCTAGGGCTACATTCTC
1 TTCCCTTCCTCTAGGGCTACATTCTC
97562168 T
1 T
97562169 ACTACCTCTT
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.11, C:0.36, G:0.11, T:0.42
Consensus pattern (26 bp):
TTCCCTTCCTCTAGGGCTACATTCTC
Found at i:97566158 original size:17 final size:18
Alignment explanation
Indices: 97566136--97566172 Score: 58
Period size: 18 Copynumber: 2.1 Consensus size: 18
97566126 GATATAATAC
*
97566136 TAAAAT-TATTAAAAAAT
1 TAAAATATATAAAAAAAT
97566153 TAAAATATATAAAAAAAT
1 TAAAATATATAAAAAAAT
97566171 TA
1 TA
97566173 GGGAAACATG
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 6 0.33
18 12 0.67
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (18 bp):
TAAAATATATAAAAAAAT
Found at i:97566459 original size:22 final size:21
Alignment explanation
Indices: 97566424--97566481 Score: 53
Period size: 22 Copynumber: 2.7 Consensus size: 21
97566414 AAAAGGTATC
* *
97566424 TACAAATTAAATCTCTAACAT
1 TACAAATCATATCTCTAACAT
*
97566445 TACAAAATCATATCTTCTAAGAT
1 TAC-AAATCATATC-TCTAACAT
* *
97566468 TGCATATCATATCT
1 TACAAATCATATCT
97566482 AAGATTGCAT
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
21 4 0.13
22 17 0.57
23 9 0.30
ACGTcount: A:0.41, C:0.19, G:0.03, T:0.36
Consensus pattern (21 bp):
TACAAATCATATCTCTAACAT
Found at i:97566484 original size:19 final size:19
Alignment explanation
Indices: 97566460--97566496 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
97566450 AATCATATCT
97566460 TCTAAGATTGCATATCATA
1 TCTAAGATTGCATATCATA
97566479 TCTAAGATTGCATATCAT
1 TCTAAGATTGCATATCAT
97566497 TGAAGATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.35, C:0.16, G:0.11, T:0.38
Consensus pattern (19 bp):
TCTAAGATTGCATATCATA
Found at i:97566504 original size:17 final size:19
Alignment explanation
Indices: 97566463--97566504 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
97566453 CATATCTTCT
*
97566463 AAGATTGCATATCATATCT
1 AAGATTGCATATCATATCG
97566482 AAGATTGCATATCAT-T-G
1 AAGATTGCATATCATATCG
97566499 AAGATT
1 AAGATT
97566505 ATATTTCCAT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
17 6 0.27
18 1 0.05
19 15 0.68
ACGTcount: A:0.38, C:0.12, G:0.14, T:0.36
Consensus pattern (19 bp):
AAGATTGCATATCATATCG
Found at i:97566653 original size:21 final size:20
Alignment explanation
Indices: 97566615--97566654 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 20
97566605 TTGGACTTCG
**
97566615 TTTTTTTTTTGGGTTTATTA
1 TTTTTTTTTTGGACTTATTA
97566635 TTTTTGTTTTTGGACTTATT
1 TTTTT-TTTTTGGACTTATT
97566655 TTTGGGCTTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.10, C:0.03, G:0.15, T:0.72
Consensus pattern (20 bp):
TTTTTTTTTTGGACTTATTA
Found at i:97567177 original size:16 final size:16
Alignment explanation
Indices: 97567136--97567178 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
97567126 GTAGATCGAC
97567136 AAAAGCCAAAATGCCG
1 AAAAGCCAAAATGCCG
**
97567152 AAAAATCAAAATGCCG
1 AAAAGCCAAAATGCCG
97567168 AAAAGCCAAAA
1 AAAAGCCAAAA
97567179 GTTTGGCTAC
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.58, C:0.21, G:0.14, T:0.07
Consensus pattern (16 bp):
AAAAGCCAAAATGCCG
Found at i:97567471 original size:29 final size:29
Alignment explanation
Indices: 97567390--97567552 Score: 197
Period size: 29 Copynumber: 5.7 Consensus size: 29
97567380 GTAGGCATGA
* *
97567390 ATAT-AATGTGATTTGGGCCAGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* * * *
97567418 ATATAAATGAG-ATTGGGCCTAATGGGTC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
97567446 ATATGAATGTGAATTGGGCCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
97567475 ATATGAACGTGAATTGGGTCTGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
97567504 ATATGAACGTGAATTGGGCCGGATGGGCC
1 ATATGAATGTGAATTGGGCCTGATGGGCC
* *
97567533 ATATAAATGAG-ATTGGGCCT
1 ATATGAATGTGAATTGGGCCT
97567553 AGTGGGAAAT
Statistics
Matches: 116, Mismatches: 17, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
28 34 0.29
29 82 0.71
ACGTcount: A:0.27, C:0.13, G:0.33, T:0.27
Consensus pattern (29 bp):
ATATGAATGTGAATTGGGCCTGATGGGCC
Found at i:97567516 original size:58 final size:57
Alignment explanation
Indices: 97567397--97567558 Score: 218
Period size: 58 Copynumber: 2.8 Consensus size: 57
97567387 TGAATATAAT
* * *
97567397 GTGATTTGGGCCAGATGGGCCATATAAATGAGATTGGGCCTAATGGGTCATATGAAT
1 GTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAAC
* * * *
97567454 GTGAATTGGGCCTGATGGGCCATATGAACGTGA-ATTGGGTCTGATGGGCCATATGAAC
1 GTGAATTGGGCCAGATGGGCCATAT-AA-ATGAGATTGGGCCTAATGGGCCATATGAAC
* *
97567512 GTGAATTGGGCCGGATGGGCCATATAAATGAGATTGGGCCTAGTGGG
1 GTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCTAATGGG
97567559 AAATATTCAC
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
56 3 0.03
57 37 0.41
58 47 0.52
59 3 0.03
ACGTcount: A:0.25, C:0.14, G:0.35, T:0.26
Consensus pattern (57 bp):
GTGAATTGGGCCAGATGGGCCATATAAATGAGATTGGGCCTAATGGGCCATATGAAC
Found at i:97569917 original size:56 final size:56
Alignment explanation
Indices: 97569850--97569961 Score: 188
Period size: 56 Copynumber: 2.0 Consensus size: 56
97569840 TTCATCTTCT
* *
97569850 TTCCCTCCCAAATTTCAGCCATTGAAGGGGGTTTGAAAGCTTAAAAATTTCAGCAA
1 TTCCCTACCAAATTTCAGCCATTAAAGGGGGTTTGAAAGCTTAAAAATTTCAGCAA
* *
97569906 TTCCCTACCAAATTTCAGCCATTAAAGGGGGTTTGAAAGCTTAAAATTTTTAGCAA
1 TTCCCTACCAAATTTCAGCCATTAAAGGGGGTTTGAAAGCTTAAAAATTTCAGCAA
97569962 CTTGAAGCAC
Statistics
Matches: 52, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.33, C:0.20, G:0.17, T:0.30
Consensus pattern (56 bp):
TTCCCTACCAAATTTCAGCCATTAAAGGGGGTTTGAAAGCTTAAAAATTTCAGCAA
Found at i:97570734 original size:46 final size:46
Alignment explanation
Indices: 97570676--97570850 Score: 178
Period size: 46 Copynumber: 3.8 Consensus size: 46
97570666 ATTCGTGTGT
* * *
97570676 GAGCTAGTGTAAGA-CATGTCTGAGACATGCATCAGCCACATTATGA
1 GAGCCAGTGTAAGACCATGTCTGAGACATGCATCGGCCACA-GATGA
* * *
97570722 GAGCCAGTGTAAGACCATGTCTGAGACATGCAACGGCCTCGAGACGTA
1 GAGCCAGTGTAAGACCATGTCTGAGACATGCATCGGCCAC-AGATG-A
* *
97570770 -AGCCAGTGTAAGA-CATGTCTGGGACATGCATCGGCTACAAGATGA
1 GAGCCAGTGTAAGACCATGTCTGAGACATGCATCGGCCAC-AGATGA
* *
97570815 TAGTCAGTGTAAGACCATGTCT-AGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTGA-GACAT-GCATCG
97570851 ACTTAAGATA
Statistics
Matches: 108, Mismatches: 14, Indels: 12
0.81 0.10 0.09
Matches are distributed among these distances:
45 1 0.01
46 50 0.46
47 49 0.45
48 8 0.07
ACGTcount: A:0.30, C:0.21, G:0.27, T:0.21
Consensus pattern (46 bp):
GAGCCAGTGTAAGACCATGTCTGAGACATGCATCGGCCACAGATGA
Found at i:97570859 original size:47 final size:48
Alignment explanation
Indices: 97570722--97570899 Score: 154
Period size: 47 Copynumber: 3.8 Consensus size: 48
97570712 CACATTATGA
* * * **
97570722 GAGCCAGTGTAAGACCATGTCT-GAGACAT-GCAACGGCCT-CGAGACGT
1 GAGCCAGTGTAAGACCATGTCTAG-GACATGGCATC-GACTACAAGATAT
* * *
97570769 AAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCTACAAGATGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTACAAGAT-AT
* *
97570816 -AGTCAGTGTAAGACCATGTCTAGGACATGGCATCGACT-TAAGATAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTACAAGATAT
* * * *
97570862 GAGCCAGTATAAGACCGTGCCTAGGACATGGTATCGAC
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGAC
97570900 ACCTCACCCT
Statistics
Matches: 110, Mismatches: 15, Indels: 12
0.80 0.11 0.09
Matches are distributed among these distances:
45 3 0.03
46 34 0.31
47 65 0.59
48 8 0.07
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (48 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTACAAGATAT
Found at i:97570867 original size:93 final size:93
Alignment explanation
Indices: 97570675--97570876 Score: 228
Period size: 93 Copynumber: 2.2 Consensus size: 93
97570665 CATTCGTGTG
* **
97570675 TGAGCTAGTGTAAGACATGTCTGAGACATGCATCAGCCACATTATGAGAGCCAGTGTAAGACCAT
1 TGAGCCAGTGTAAGACATGTCTGAGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCAT
* * *
97570740 GTCTGAGACATGCAACGGCCTCGAGACG
66 GTCTGAGACATGCAACGGACTCAAGACA
* * * * * *
97570768 TAAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGATAGTCAGTGTAAGACCAT
1 TGAGCCAGTGTAAGACATGTCTGAGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCAT
* * *
97570833 GTCT-AGGACATGGCATC-GACTTAAGATA
66 GTCTGA-GACAT-GCAACGGACTCAAGACA
*
97570861 TGAGCCAGTATAAGAC
1 TGAGCCAGTGTAAGAC
97570877 CGTGCCTAGG
Statistics
Matches: 90, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
92 1 0.01
93 85 0.94
94 4 0.04
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (93 bp):
TGAGCCAGTGTAAGACATGTCTGAGACATGCATCAGCCACAAGATGAGAGCCAGTGTAAGACCAT
GTCTGAGACATGCAACGGACTCAAGACA
Found at i:97583103 original size:13 final size:13
Alignment explanation
Indices: 97583085--97583109 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
97583075 ACAAACGATA
97583085 AAATTTTCACACG
1 AAATTTTCACACG
97583098 AAATTTTCACAC
1 AAATTTTCACAC
97583110 ATATAATATG
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.24, G:0.04, T:0.32
Consensus pattern (13 bp):
AAATTTTCACACG
Found at i:97587166 original size:80 final size:78
Alignment explanation
Indices: 97587065--97587290 Score: 260
Period size: 80 Copynumber: 2.8 Consensus size: 78
97587055 GCTCCTCATT
* *
97587065 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTC-GGACTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
97587130 ATTTAGTAACTCGCA
64 ATTTAGTAACTCGCA
* *
97587145 CAAATGCCTTCGGGACTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTC-GGATCTTAGTCC
1 CAAATGCCTTC-GGACTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAGCCC
*
97587208 GGATTTAGTATCTCGCA
62 GGATTTAGTAACTCGCA
* * * * *
97587225 CAAATGCCTTCAGATCTTAGTCCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGGA-CTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
97587289 GA
63 GA
97587291 CATCATTCAA
Statistics
Matches: 125, Mismatches: 13, Indels: 16
0.81 0.08 0.10
Matches are distributed among these distances:
79 8 0.06
80 104 0.83
81 12 0.10
82 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGACTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAT
TTAGTAACTCGCA
Found at i:97587274 original size:120 final size:120
Alignment explanation
Indices: 97587065--97587290 Score: 291
Period size: 120 Copynumber: 1.9 Consensus size: 120
97587055 GCTCCTCATT
*
97587065 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGAGACTTAACCCGG
* *
97587130 ATTTAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
66 ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* * **
97587185 CAAATGCCTTC-GGATCTTAGTCCGGATT-TAGT-ATCTCGCACAAATGCCTTC-AGATCTTAGT
1 CAAATGCCTTCAGGA-CATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGAGA-CTTAAC
* *
97587246 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGCCCGGA
62 CCGGATATAGTAAC-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
97587291 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
119 7 0.08
120 75 0.82
121 10 0.11
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (120 bp):
CAAATGCCTTCAGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGAGACTTAACCCGG
ATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:97587290 original size:40 final size:39
Alignment explanation
Indices: 97587065--97587290 Score: 235
Period size: 40 Copynumber: 5.7 Consensus size: 39
97587055 GCTCCTCATT
* * *
97587065 CAAATGCCTTCAGGACATAGCCCGGTTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
* * *
97587105 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGT-ATTCGCA
97587145 CAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAT-TCGCA
* *
97587185 CAAATGCCTTC-GGATCTTAGTCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAT-TCGCA
* * * *
97587225 CAAATGCCTTC-AGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGT-A-TTCGCA
97587266 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
97587291 CATCATTCAA
Statistics
Matches: 162, Mismatches: 17, Indels: 14
0.84 0.09 0.07
Matches are distributed among these distances:
39 4 0.02
40 146 0.90
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.21, T:0.26
Consensus pattern (39 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTATTCGCA
Found at i:97592345 original size:39 final size:40
Alignment explanation
Indices: 97592250--97592472 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
97592240 TTGAATGATG
*
97592250 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
97592288 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
97592329 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
97592368 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
97592407 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
97592446 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
97592473 AACGAGGAGC
Statistics
Matches: 164, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
39 93 0.57
40 59 0.36
41 11 0.07
42 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:97592436 original size:79 final size:81
Alignment explanation
Indices: 97592250--97592472 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
97592240 TTGAATGATG
* * *
97592250 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGT-ACTAATATCCGGGCTAAGACCCGAAGGCAT
*
97592312 TTGTGCGAGATACTAAT
65 TTGTGCGAGATACTAAA
97592329 TCCGGGCTAAG-CCCGAAGGCATTTGTGCG-AGATACTAAT-TCCGGGCTAAG-CCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAG-TACTAATATCCGGGCTAAGACCCGAAGGCAT
*
97592390 TTGTGCGAGTTACTAAA
65 TTGTGCGAGATACTAAA
* * * * *
97592407 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
97592471 TG
66 TG
97592473 AACGAGGAGC
Statistics
Matches: 127, Mismatches: 9, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAAGTACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Found at i:97592494 original size:79 final size:79
Alignment explanation
Indices: 97592250--97592505 Score: 217
Period size: 79 Copynumber: 3.3 Consensus size: 79
97592240 TTGAATGATG
* * * *
97592250 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
97592311 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
97592329 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
97592393 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
*
97592407 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-ATAACCGGGCTATGTCCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
97592470 TTGAACGAG-GAGCTATA
63 TTGAACGAGTGA-CTAAA
* *
97592487 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
97592506 TACGTGATTT
Statistics
Matches: 153, Mismatches: 14, Indels: 20
0.82 0.07 0.11
Matches are distributed among these distances:
77 1 0.01
78 46 0.30
79 69 0.45
80 36 0.24
81 1 0.01
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:97615285 original size:44 final size:44
Alignment explanation
Indices: 97615222--97615306 Score: 161
Period size: 44 Copynumber: 1.9 Consensus size: 44
97615212 AAAGTGACTT
97615222 CTGGATAGAGTGATAAGACTCTAATAAGGTTCCAACCGATTTTG
1 CTGGATAGAGTGATAAGACTCTAATAAGGTTCCAACCGATTTTG
*
97615266 CTGGATAGAGTGATAAGACTCTAATAAGGTTCCATCCGATT
1 CTGGATAGAGTGATAAGACTCTAATAAGGTTCCAACCGATT
97615307 AAGCTTCCAA
Statistics
Matches: 40, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.29
Consensus pattern (44 bp):
CTGGATAGAGTGATAAGACTCTAATAAGGTTCCAACCGATTTTG
Found at i:97620068 original size:28 final size:28
Alignment explanation
Indices: 97620035--97620096 Score: 108
Period size: 29 Copynumber: 2.2 Consensus size: 28
97620025 TTGAAGAAAG
97620035 AAAAAAAAA-TTATTTTAAGAAACTCAT
1 AAAAAAAAATTTATTTTAAGAAACTCAT
97620062 AAGAAAAAAATTTATTTTAAGAAACTCAT
1 AA-AAAAAAATTTATTTTAAGAAACTCAT
97620091 AAAAAA
1 AAAAAA
97620097 TGACAAAGTG
Statistics
Matches: 33, Mismatches: 0, Indels: 3
0.92 0.00 0.08
Matches are distributed among these distances:
27 2 0.06
28 11 0.33
29 20 0.61
ACGTcount: A:0.61, C:0.06, G:0.05, T:0.27
Consensus pattern (28 bp):
AAAAAAAAATTTATTTTAAGAAACTCAT
Found at i:97629473 original size:17 final size:17
Alignment explanation
Indices: 97629453--97629489 Score: 74
Period size: 17 Copynumber: 2.2 Consensus size: 17
97629443 CATTTCGATT
97629453 TACACATTATTGAAGGC
1 TACACATTATTGAAGGC
97629470 TACACATTATTGAAGGC
1 TACACATTATTGAAGGC
97629487 TAC
1 TAC
97629490 GTCATGAACA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 20 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.30
Consensus pattern (17 bp):
TACACATTATTGAAGGC
Found at i:97629584 original size:46 final size:46
Alignment explanation
Indices: 97629534--97629621 Score: 149
Period size: 46 Copynumber: 1.9 Consensus size: 46
97629524 CCAGGGGTCT
*
97629534 TAACCACATGGTTTTACATACATTCTTTCAGTCATTTCATATATTG
1 TAACCACATGGTTTTACATACATTCATTCAGTCATTTCATATATTG
* *
97629580 TAACCACATGTTTTTACATTCATTCATTCAGTCATTTCATAT
1 TAACCACATGGTTTTACATACATTCATTCAGTCATTTCATAT
97629622 CTTGCCATGG
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
46 39 1.00
ACGTcount: A:0.28, C:0.20, G:0.07, T:0.44
Consensus pattern (46 bp):
TAACCACATGGTTTTACATACATTCATTCAGTCATTTCATATATTG
Found at i:97629682 original size:54 final size:56
Alignment explanation
Indices: 97629580--97629716 Score: 181
Period size: 54 Copynumber: 2.5 Consensus size: 56
97629570 TCATATATTG
* * *
97629580 TAACCACATGTTTTTACATTCATTCATTCAGTCATTTCATATCTTGCCATGGGCCT
1 TAACCACATGGTCTTACAGTCATTCATTCAGTCATTTCATATCTTGCCATGGGCCT
* * *
97629636 TAACCACATGGTCTTAC-GTCATTCATTTAGTCGTTTC-TATCTTGCCATGGGTCT
1 TAACCACATGGTCTTACAGTCATTCATTCAGTCATTTCATATCTTGCCATGGGCCT
*
97629690 TAACCACATGGTCTGACA-TACATTCAT
1 TAACCACATGGTCTTACAGT-CATTCAT
97629717 GTATTGTGAT
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
54 33 0.46
55 24 0.33
56 15 0.21
ACGTcount: A:0.23, C:0.25, G:0.13, T:0.39
Consensus pattern (56 bp):
TAACCACATGGTCTTACAGTCATTCATTCAGTCATTTCATATCTTGCCATGGGCCT
Found at i:97630995 original size:20 final size:20
Alignment explanation
Indices: 97630970--97631007 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
97630960 TTTGAACCCT
97630970 TAGACTTCTACCAATACAGG
1 TAGACTTCTACCAATACAGG
*
97630990 TAGACTTCTACCACTACA
1 TAGACTTCTACCAATACA
97631008 TCGAGCTCCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.34, C:0.29, G:0.11, T:0.26
Consensus pattern (20 bp):
TAGACTTCTACCAATACAGG
Found at i:97632395 original size:27 final size:27
Alignment explanation
Indices: 97632362--97632414 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
97632352 ATCATGTTCA
97632362 AAGAATACAGGTAATTAGAATCCCAAT
1 AAGAATACAGGTAATTAGAATCCCAAT
97632389 AAGAATACAGGTAATTAGAATCCCAA
1 AAGAATACAGGTAATTAGAATCCCAA
97632415 GTACTCAATT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.15, G:0.15, T:0.21
Consensus pattern (27 bp):
AAGAATACAGGTAATTAGAATCCCAAT
Found at i:97633224 original size:105 final size:105
Alignment explanation
Indices: 97633042--97633254 Score: 383
Period size: 105 Copynumber: 2.0 Consensus size: 105
97633032 AAGTTTGTAT
*
97633042 GTTACCCCCACACTTTATTTGTCACATTGTCCCTATGGTGCACCCAACAATAAATAAGAGAAAAG
1 GTTACCCCCACACTTTATTTGTCACATTGTCCCTATGGTGCACCCAAAAATAAATAAGAGAAAAG
*
97633107 ACTACTTAATTTTTCATGAAGGTGTCGTGATATTAGTTTG
66 ACTACTTAATTTTTCATGAAGGTGTCGTGATATTAGTTGG
*
97633147 GTTACCCCTACACTTTATTTGTCACATTGTCCCTAAT-GTGCACCCAAAAATAAATAAGAGAAAA
1 GTTACCCCCACACTTTATTTGTCACATTGTCCCT-ATGGTGCACCCAAAAATAAATAAGAGAAAA
97633211 GACTACTTAATTTTTCATGAAGGTGTCGTGATATTAGTTGG
65 GACTACTTAATTTTTCATGAAGGTGTCGTGATATTAGTTGG
97633252 GTT
1 GTT
97633255 GTTGTCCTTT
Statistics
Matches: 104, Mismatches: 3, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
105 102 0.98
106 2 0.02
ACGTcount: A:0.31, C:0.19, G:0.16, T:0.34
Consensus pattern (105 bp):
GTTACCCCCACACTTTATTTGTCACATTGTCCCTATGGTGCACCCAAAAATAAATAAGAGAAAAG
ACTACTTAATTTTTCATGAAGGTGTCGTGATATTAGTTGG
Found at i:97651765 original size:46 final size:45
Alignment explanation
Indices: 97651677--97651805 Score: 134
Period size: 46 Copynumber: 2.8 Consensus size: 45
97651667 ACCTCTCACA
* * *
97651677 GCCGATGCATGTCCCAGACATGTCTTACTCTGGCTTATGTCTCGAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGC-TATGTCTCAAG
* * * *
97651723 GGCGATGCATGTCCTAAACATGTCTTACACTAGC-ACTCGTCTCAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTAGCTA-T-GTCTCAAG
*
97651769 GCCGATGCCATGTCCCAGACATTATCTTACACTAGCT
1 GCCGATG-CATGTCCCAGACA-TGTCTTACACTAGCT
97651806 CTCATAATGT
Statistics
Matches: 67, Mismatches: 11, Indels: 7
0.79 0.13 0.08
Matches are distributed among these distances:
44 1 0.01
45 1 0.01
46 41 0.61
47 11 0.16
48 13 0.19
ACGTcount: A:0.22, C:0.29, G:0.19, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTAGCTATGTCTCAAG
Found at i:97683764 original size:25 final size:25
Alignment explanation
Indices: 97683735--97683798 Score: 103
Period size: 25 Copynumber: 2.6 Consensus size: 25
97683725 ACAAACGCAG
97683735 TCCTGATATAGGCTCTTTATGAGCA
1 TCCTGATATAGGCTCTTTATGAGCA
*
97683760 TCCTGATATAGGCTCTTTATGAGCT
1 TCCTGATATAGGCTCTTTATGAGCA
*
97683785 TCCTGACAT-GGCTC
1 TCCTGATATAGGCTC
97683799 ACTTGAACAT
Statistics
Matches: 37, Mismatches: 2, Indels: 1
0.93 0.05 0.03
Matches are distributed among these distances:
24 5 0.14
25 32 0.86
ACGTcount: A:0.20, C:0.23, G:0.20, T:0.36
Consensus pattern (25 bp):
TCCTGATATAGGCTCTTTATGAGCA
Found at i:97704857 original size:26 final size:24
Alignment explanation
Indices: 97704819--97704896 Score: 77
Period size: 24 Copynumber: 3.2 Consensus size: 24
97704809 GACTCACCAT
*
97704819 AGCTCGTATGAGCTTACCGATATATC
1 AGCTCGTAAGAGCTTACCG-T-TATC
* *
97704845 AGCTCGTAAGAGCTTACTGTTTTC
1 AGCTCGTAAGAGCTTACCGTTATC
* * *
97704869 AGCTTGTTAGAGCTTACCATT-TC
1 AGCTCGTAAGAGCTTACCGTTATC
97704892 AGCTC
1 AGCTC
97704897 AATAGAGCTT
Statistics
Matches: 44, Mismatches: 8, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
23 6 0.14
24 20 0.45
25 1 0.02
26 17 0.39
ACGTcount: A:0.23, C:0.23, G:0.19, T:0.35
Consensus pattern (24 bp):
AGCTCGTAAGAGCTTACCGTTATC
Found at i:97705105 original size:20 final size:20
Alignment explanation
Indices: 97705080--97705165 Score: 95
Period size: 20 Copynumber: 4.4 Consensus size: 20
97705070 AAAAGCTATG
*
97705080 TGTTTATACGGATGAATTAC
1 TGTTTATACGGATGAATTAT
* * *
97705100 TGTTTATATGGATGAAGTAA
1 TGTTTATACGGATGAATTAT
* *
97705120 TGTTTATACAGATGAGTTAT
1 TGTTTATACGGATGAATTAT
*
97705140 TG-TTAT-CGAATGAATTAT
1 TGTTTATACGGATGAATTAT
97705158 TGTTTATA
1 TGTTTATA
97705166 TGATTGATAG
Statistics
Matches: 53, Mismatches: 11, Indels: 4
0.78 0.16 0.06
Matches are distributed among these distances:
18 11 0.21
19 8 0.15
20 34 0.64
ACGTcount: A:0.31, C:0.05, G:0.20, T:0.44
Consensus pattern (20 bp):
TGTTTATACGGATGAATTAT
Found at i:97707106 original size:25 final size:25
Alignment explanation
Indices: 97707069--97707132 Score: 74
Period size: 25 Copynumber: 2.6 Consensus size: 25
97707059 ACAGATGTGG
* *
97707069 TAATCAGAGAGCACTAACATGCTAA
1 TAATCAAAAAGCACTAACATGCTAA
* **
97707094 TAATCAAAAAGCACTGATGTGCTAA
1 TAATCAAAAAGCACTAACATGCTAA
*
97707119 TAATCAAATAGCAC
1 TAATCAAAAAGCAC
97707133 GCTAAGGTTC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
25 33 1.00
ACGTcount: A:0.45, C:0.19, G:0.14, T:0.22
Consensus pattern (25 bp):
TAATCAAAAAGCACTAACATGCTAA
Found at i:97708652 original size:12 final size:13
Alignment explanation
Indices: 97708596--97708649 Score: 56
Period size: 12 Copynumber: 4.0 Consensus size: 13
97708586 TCTTTAATTT
97708596 ATAATAATAATAATA
1 ATAAT-ATAAT-ATA
* *
97708611 ATAATATCAATGTC
1 ATAATAT-AATATA
97708625 ATAATATAA-ATA
1 ATAATATAATATA
97708637 ATAATATAATATA
1 ATAATATAATATA
97708650 TAAATATCTT
Statistics
Matches: 33, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
12 10 0.30
13 5 0.15
14 10 0.30
15 8 0.24
ACGTcount: A:0.59, C:0.04, G:0.02, T:0.35
Consensus pattern (13 bp):
ATAATATAATATA
Found at i:97708783 original size:20 final size:18
Alignment explanation
Indices: 97708758--97708794 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 18
97708748 ATAAATTTAT
97708758 TTATTTCATAATATAATATC
1 TTATTT-ATAAT-TAATATC
97708778 TTATTTATAATTAATAT
1 TTATTTATAATTAATAT
97708795 AAATTACAAT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 6 0.35
19 5 0.29
20 6 0.35
ACGTcount: A:0.41, C:0.05, G:0.00, T:0.54
Consensus pattern (18 bp):
TTATTTATAATTAATATC
Found at i:97709949 original size:42 final size:42
Alignment explanation
Indices: 97709900--97710014 Score: 131
Period size: 43 Copynumber: 2.7 Consensus size: 42
97709890 ACTGAGATTA
* *
97709900 CATGTAAGACCATATTTGGGATATGGCATTAATACAAGACTT
1 CATGTAAGACCATATCTGGGATATGCCATTAATACAAGACTT
* * * ** * *
97709942 CGTGTAAGACCATAGCTGGGCTATTGCCATCGATACGAGATTT
1 CATGTAAGACCATATCTGGGATA-TGCCATTAATACAAGACTT
*
97709985 CATGTAAGACCATATCTAGGATATGCCATT
1 CATGTAAGACCATATCTGGGATATGCCATT
97710015 GTTATTGTAC
Statistics
Matches: 58, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 25 0.43
43 33 0.57
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30
Consensus pattern (42 bp):
CATGTAAGACCATATCTGGGATATGCCATTAATACAAGACTT
Found at i:97711551 original size:41 final size:41
Alignment explanation
Indices: 97711471--97711552 Score: 137
Period size: 41 Copynumber: 2.0 Consensus size: 41
97711461 AAGGGCCAAC
**
97711471 ACATTTAGCTAATCAATATGACACATAATAAAAGGACTAAG
1 ACATTTAGCTAATCAATATGACACATAATAAAAAAACTAAG
*
97711512 ACATTTAGCTAATCAATATGATACATAATAAAAAAACTAAG
1 ACATTTAGCTAATCAATATGACACATAATAAAAAAACTAAG
97711553 TCCTTATACA
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
41 38 1.00
ACGTcount: A:0.51, C:0.13, G:0.10, T:0.26
Consensus pattern (41 bp):
ACATTTAGCTAATCAATATGACACATAATAAAAAAACTAAG
Found at i:97720189 original size:27 final size:27
Alignment explanation
Indices: 97720121--97720191 Score: 74
Period size: 27 Copynumber: 2.6 Consensus size: 27
97720111 TAATCAGCAT
* *
97720121 ATAGCCATGGGTAAATATGATCGACAC
1 ATAGCCATAGGTAAATATGATAGACAC
* *
97720148 AAAGTCC-TCA-ATAAATATGATAGACAC
1 ATAG-CCAT-AGGTAAATATGATAGACAC
97720175 ATAGCCATAGGTAAATA
1 ATAGCCATAGGTAAATA
97720192 CAATTGGCAC
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
26 3 0.09
27 29 0.85
28 2 0.06
ACGTcount: A:0.44, C:0.17, G:0.17, T:0.23
Consensus pattern (27 bp):
ATAGCCATAGGTAAATATGATAGACAC
Found at i:97720245 original size:22 final size:22
Alignment explanation
Indices: 97720196--97720254 Score: 73
Period size: 22 Copynumber: 2.7 Consensus size: 22
97720186 TAAATACAAT
97720196 TGGCACAAAGCCATAGTCAGGA
1 TGGCACAAAGCCATAGTCAGGA
* * * *
97720218 TAGCACAAAGCCATATTTAGGC
1 TGGCACAAAGCCATAGTCAGGA
*
97720240 TGGCACAGAGCCATA
1 TGGCACAAAGCCATA
97720255 AATAGATTAA
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
22 31 1.00
ACGTcount: A:0.36, C:0.24, G:0.24, T:0.17
Consensus pattern (22 bp):
TGGCACAAAGCCATAGTCAGGA
Found at i:97724265 original size:43 final size:42
Alignment explanation
Indices: 97724208--97724356 Score: 138
Period size: 42 Copynumber: 3.5 Consensus size: 42
97724198 CATTGCCATA
* ** *
97724208 TCCCAGATATGGTCTTACATGTTATCAAATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGAAATCAAATA-CGATGCCAATG
* * * *
97724251 TCCCAGACAGGGTCTTATATGAAATTATATACGATGCCAATG
1 TCCCAGACATGGTCTTACATGAAATCAAATACGATGCCAATG
* * * **
97724293 TCCTAGACATGGTCTTACACGTAAATCTCAAAT-CAATGCTGATG
1 TCCCAGACATGGTCTTACATG-AAA--TCAAATACGATGCCAATG
97724337 TCCCAGACATGGTCTTACAT
1 TCCCAGACATGGTCTTACAT
97724357 AATATCACAT
Statistics
Matches: 84, Mismatches: 19, Indels: 5
0.78 0.18 0.05
Matches are distributed among these distances:
42 27 0.32
43 27 0.32
44 26 0.31
45 4 0.05
ACGTcount: A:0.30, C:0.23, G:0.17, T:0.30
Consensus pattern (42 bp):
TCCCAGACATGGTCTTACATGAAATCAAATACGATGCCAATG
Found at i:97727933 original size:39 final size:40
Alignment explanation
Indices: 97727838--97728060 Score: 273
Period size: 39 Copynumber: 5.7 Consensus size: 40
97727828 TTGAATGATG
*
97727838 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
97727876 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
97727917 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
97727956 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
97727995 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
97728034 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
97728061 AACGAGGAGC
Statistics
Matches: 166, Mismatches: 10, Indels: 15
0.87 0.05 0.08
Matches are distributed among these distances:
39 93 0.56
40 61 0.37
41 11 0.07
42 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:97728024 original size:79 final size:81
Alignment explanation
Indices: 97727838--97728060 Score: 282
Period size: 79 Copynumber: 2.8 Consensus size: 81
97727828 TTGAATGATG
* * *
97727838 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATATCCGGGCTAAGACCCGAAGGCA
*
97727899 TTTGTGCGAGATACTAAT
64 TTTGTGCGAGATACTAAA
97727917 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
*
97727979 TGTGCGAGTTACTAAA
66 TGTGCGAGATACTAAA
* * * * *
97727995 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
97728059 TG
66 TG
97728061 AACGAGGAGC
Statistics
Matches: 128, Mismatches: 9, Indels: 13
0.85 0.06 0.09
Matches are distributed among these distances:
78 46 0.36
79 56 0.44
80 25 0.20
81 1 0.01
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAATATCCGGGCTAAGACCCGAAGGCATT
TGTGCGAGATACTAAA
Done.