Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 287 of 297
Found at i:97728082 original size:79 final size:79
Alignment explanation
Indices: 97727838--97728093 Score: 224
Period size: 79 Copynumber: 3.3 Consensus size: 79
97727828 TTGAATGATG
* * * *
97727838 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
** *
97727899 TTTGTGCGAGAT-ACTAAT
62 TTTGAACGAG-TGACTAAA
* *
97727917 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
** *
97727981 TGCGAGTTACTAAA
66 AACGAGTGACTAAA
* *
97727995 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
97728059 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
97728075 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
97728094 TACGTGATTT
Statistics
Matches: 153, Mismatches: 15, Indels: 18
0.82 0.08 0.10
Matches are distributed among these distances:
77 1 0.01
78 45 0.29
79 70 0.46
80 36 0.24
81 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:97729591 original size:30 final size:30
Alignment explanation
Indices: 97729555--97729615 Score: 113
Period size: 30 Copynumber: 2.0 Consensus size: 30
97729545 CAATTTACCC
*
97729555 ATACAAATTATGTAATTAATGAATCTAGTG
1 ATACAAATTATGTAATTAATAAATCTAGTG
97729585 ATACAAATTATGTAATTAATAAATCTAGTG
1 ATACAAATTATGTAATTAATAAATCTAGTG
97729615 A
1 A
97729616 CATAAAAATT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 30 1.00
ACGTcount: A:0.46, C:0.07, G:0.11, T:0.36
Consensus pattern (30 bp):
ATACAAATTATGTAATTAATAAATCTAGTG
Found at i:97751211 original size:56 final size:56
Alignment explanation
Indices: 97751125--97751234 Score: 184
Period size: 56 Copynumber: 2.0 Consensus size: 56
97751115 TTCTCCTTTT
97751125 TTTAAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATAAA
1 TTTAAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATAAA
** * *
97751181 TTTAAATAAGATTCCTTTGCCTGGCGTGCCTTTTAAGTACTGTAGAATCTGATA
1 TTTAAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATA
97751235 TACAGCACTA
Statistics
Matches: 50, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 50 1.00
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.37
Consensus pattern (56 bp):
TTTAAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATAAA
Found at i:97751247 original size:56 final size:56
Alignment explanation
Indices: 97751128--97751248 Score: 152
Period size: 56 Copynumber: 2.2 Consensus size: 56
97751118 TCCTTTTTTT
***
97751128 AAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATAAATTT
1 AAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATAAACAG
** * * *
97751184 AAATAAGATTCCTTTGCCTGGCGTGCCTTTTAAGTACTGTAGAATCTGATATACAG
1 AAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATAAACAG
* *
97751240 CACTAAGAT
1 AAATAAGAT
97751249 GTGATTCCTT
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Consensus pattern (56 bp):
AAATAAGATTCCTTTGCCAAGCGTGCCTTTTAAATACTGTAAAATCTGATAAACAG
Found at i:97755765 original size:34 final size:34
Alignment explanation
Indices: 97755727--97755794 Score: 127
Period size: 34 Copynumber: 2.0 Consensus size: 34
97755717 AAAAAATCCA
*
97755727 TGCTCCTTGGTTTAATTAGTCCTATGAACTTGGC
1 TGCTCCTTGGTTTAATTAGTCCTATCAACTTGGC
97755761 TGCTCCTTGGTTTAATTAGTCCTATCAACTTGGC
1 TGCTCCTTGGTTTAATTAGTCCTATCAACTTGGC
97755795 ATCAAAATAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.18, C:0.22, G:0.19, T:0.41
Consensus pattern (34 bp):
TGCTCCTTGGTTTAATTAGTCCTATCAACTTGGC
Found at i:97761504 original size:93 final size:93
Alignment explanation
Indices: 97761392--97761563 Score: 317
Period size: 93 Copynumber: 1.8 Consensus size: 93
97761382 CGCCCATAAG
* *
97761392 CGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97761457 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
*
97761485 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
97761550 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
97761564 TCAACCATCC
Statistics
Matches: 76, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 76 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.21
Consensus pattern (93 bp):
CGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:97761560 original size:46 final size:46
Alignment explanation
Indices: 97761385--97761560 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
97761375 TGTAACCCGC
* * *
97761385 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
97761431 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
97761481 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
97761524 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
97761561 TGCTCAACCA
Statistics
Matches: 111, Mismatches: 10, Indels: 18
0.80 0.07 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 63 0.57
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:97769964 original size:14 final size:14
Alignment explanation
Indices: 97769945--97769973 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
97769935 TTATATTTTA
97769945 TAGTGATATATTTG
1 TAGTGATATATTTG
97769959 TAGTGATATATTTG
1 TAGTGATATATTTG
97769973 T
1 T
97769974 GTGTGTGTGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (14 bp):
TAGTGATATATTTG
Found at i:97777307 original size:25 final size:26
Alignment explanation
Indices: 97777279--97777327 Score: 91
Period size: 25 Copynumber: 1.9 Consensus size: 26
97777269 TTGTTAGAAT
97777279 ACATTTTAGAGGTTTTAGG-TTGAAC
1 ACATTTTAGAGGTTTTAGGATTGAAC
97777304 ACATTTTAGAGGTTTTAGGATTGA
1 ACATTTTAGAGGTTTTAGGATTGA
97777328 TTTATAGACT
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
25 19 0.83
26 4 0.17
ACGTcount: A:0.29, C:0.06, G:0.24, T:0.41
Consensus pattern (26 bp):
ACATTTTAGAGGTTTTAGGATTGAAC
Found at i:97778232 original size:24 final size:24
Alignment explanation
Indices: 97778200--97778248 Score: 57
Period size: 24 Copynumber: 2.0 Consensus size: 24
97778190 ATGCATGGTT
*
97778200 ATGTCAATGTAGCA-TTTTCAGAAAA
1 ATGTCAATGCAG-ATTTTTCA-AAAA
97778225 ATGT-AATGCAGATTTTTCAAAAA
1 ATGTCAATGCAGATTTTTCAAAAA
97778248 A
1 A
97778249 CTTCCTTCCT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
23 6 0.27
24 12 0.55
25 4 0.18
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (24 bp):
ATGTCAATGCAGATTTTTCAAAAA
Found at i:97790047 original size:18 final size:19
Alignment explanation
Indices: 97790019--97790058 Score: 64
Period size: 18 Copynumber: 2.2 Consensus size: 19
97790009 TCGAAAATTG
97790019 AATAGTGATTTCATGACTT
1 AATAGTGATTTCATGACTT
*
97790038 AATA-TGATTTGATGACTT
1 AATAGTGATTTCATGACTT
97790056 AAT
1 AAT
97790059 CTTGTGAACA
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
18 16 0.80
19 4 0.20
ACGTcount: A:0.35, C:0.07, G:0.15, T:0.42
Consensus pattern (19 bp):
AATAGTGATTTCATGACTT
Found at i:97798477 original size:44 final size:44
Alignment explanation
Indices: 97798401--97798661 Score: 218
Period size: 44 Copynumber: 5.9 Consensus size: 44
97798391 GTCTAAGTGT
* * * *
97798401 AAGCCAAAGTAGCAAACAATCTAAATGCAAGCCAAAAGTGGGTGC
1 AAGCCAAAGTGGTAGACAGTCTAAATGCAAGCC-AAAGTGGGTGC
* * * * *
97798446 AAGCCAAA-TTGTTGACAGTTTAAGTGCAAGCCAAAGTTGGTGC
1 AAGCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAGTGGGTGC
* * * * * * **
97798489 AAGCCAAAATAGCAGGCAATCTAAATGCAAGCTAAAGTGGGCAC
1 AAGCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAGTGGGTGC
* * * * * * *
97798533 ATGTCAAAGTGGCAGACAATATAAATGCAAGCCAAATTTGGTGC
1 AAGCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAGTGGGTGC
* * *
97798577 AATCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAAATGGATGC
1 AAGCCAAAGTGGTAGACAGTCTAAATGCAAGCC-AAAGTGGGTGC
* * * *
97798622 AAGCCAAAGTGGTGGATAGTTTAAGTGCAAGCCAAAGTGG
1 AAGCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAGTGG
97798662 TAGATAGTTT
Statistics
Matches: 169, Mismatches: 45, Indels: 5
0.77 0.21 0.02
Matches are distributed among these distances:
43 18 0.11
44 107 0.63
45 44 0.26
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (44 bp):
AAGCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAGTGGGTGC
Found at i:97798659 original size:28 final size:27
Alignment explanation
Indices: 97798619--97798713 Score: 136
Period size: 28 Copynumber: 3.4 Consensus size: 27
97798609 CAAAAATGGA
97798619 TGCAAGCCAAAGTGGTGGATAGTTTAAG
1 TGCAAGCCAAAGTGGT-GATAGTTTAAG
97798647 TGCAAGCCAAAGTGGTAGATAGTTTAAG
1 TGCAAGCCAAAGTGGT-GATAGTTTAAG
* *
97798675 TGCAAGCCAAAGTGGTGATCAGTCTAAA
1 TGCAAGCCAAAGTGGTGAT-AGTTTAAG
*
97798703 TGCAAGTCAAA
1 TGCAAGCCAAA
97798714 AGTAGTGGCA
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
27 3 0.05
28 59 0.95
ACGTcount: A:0.36, C:0.14, G:0.27, T:0.23
Consensus pattern (27 bp):
TGCAAGCCAAAGTGGTGATAGTTTAAG
Found at i:97798749 original size:101 final size:101
Alignment explanation
Indices: 97798573--97798758 Score: 250
Period size: 101 Copynumber: 1.8 Consensus size: 101
97798563 GCCAAATTTG
* * **
97798573 GTGCAATCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAAATGGATGCAAGCCAAAGTGGTGGA
1 GTGCAAGCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAAATAGATGCAAGCCAAAGTGGCAGA
* **
97798638 TAGTTTAAGTGCAAGCCAAAGTGGTAGATAGTTTAA
66 CAGTCCAAGTGCAAGCCAAAGTGGTAGATAGTTTAA
* *
97798674 GTGCAAGCCAAAGTGGT-GATCAGTCTAAATGCAAGTCAAAAGTAG-TGGCAAGCCAAAGTGGCA
1 GTGCAAGCCAAAGTGGTAGA-CAGTCTAAATGCAAGCCAAAAATAGAT-GCAAGCCAAAGTGGCA
*
97798737 GACAGTCCAAGTGGAAGCCAAA
64 GACAGTCCAAGTGCAAGCCAAA
97798759 ATGACGAACA
Statistics
Matches: 73, Mismatches: 10, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
100 3 0.04
101 70 0.96
ACGTcount: A:0.38, C:0.16, G:0.27, T:0.19
Consensus pattern (101 bp):
GTGCAAGCCAAAGTGGTAGACAGTCTAAATGCAAGCCAAAAATAGATGCAAGCCAAAGTGGCAGA
CAGTCCAAGTGCAAGCCAAAGTGGTAGATAGTTTAA
Found at i:97802695 original size:49 final size:50
Alignment explanation
Indices: 97802623--97802807 Score: 209
Period size: 49 Copynumber: 3.8 Consensus size: 50
97802613 AGATATGTCA
* * * * * **
97802623 GGCCACT-GGTAGGACATGATAGTTTCTAACCATATTAGTGTATG-TGTTG
1 GGCCACTAGGTAGGGCATGTTAGTTGCTAACCAGATTAGTG-AAGATGACG
* *
97802672 GGCCA-TAGGTAGGGCATGTTAGTTGCTAACCAGGTTGGTGAAGATGACG
1 GGCCACTAGGTAGGGCATGTTAGTTGCTAACCAGATTAGTGAAGATGACG
* *
97802721 GGCCACTA-GTAGGGCATGTTAGTTGCTAACCAGGTTAGTGAAGATGACA
1 GGCCACTAGGTAGGGCATGTTAGTTGCTAACCAGATTAGTGAAGATGACG
* *
97802770 GGCCACT-GGTAGGGCATGTTAGTTGGTAACCAGCTTAG
1 GGCCACTAGGTAGGGCATGTTAGTTGCTAACCAGATTAG
97802808 CATTATGGTT
Statistics
Matches: 119, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
48 3 0.03
49 114 0.96
50 2 0.02
ACGTcount: A:0.25, C:0.16, G:0.32, T:0.28
Consensus pattern (50 bp):
GGCCACTAGGTAGGGCATGTTAGTTGCTAACCAGATTAGTGAAGATGACG
Found at i:97806579 original size:18 final size:17
Alignment explanation
Indices: 97806541--97806579 Score: 51
Period size: 17 Copynumber: 2.2 Consensus size: 17
97806531 AAGCTAATCT
* *
97806541 GGGCGTGTGGGTCATAC
1 GGGCGTGTGGGCCACAC
97806558 GGGCGTGTGGGCCCACAC
1 GGGCGTGTGGG-CCACAC
97806576 GGGC
1 GGGC
97806580 AAACCATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
17 11 0.58
18 8 0.42
ACGTcount: A:0.10, C:0.26, G:0.49, T:0.15
Consensus pattern (17 bp):
GGGCGTGTGGGCCACAC
Found at i:97814672 original size:18 final size:18
Alignment explanation
Indices: 97814651--97814689 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
97814641 TTTCATTAAG
97814651 TTTTTAAGATTCAATTGT
1 TTTTTAAGATTCAATTGT
* *
97814669 TTTTTGAGATTCATTTGT
1 TTTTTAAGATTCAATTGT
97814687 TTT
1 TTT
97814690 CCTTTTAAAA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.21, C:0.05, G:0.13, T:0.62
Consensus pattern (18 bp):
TTTTTAAGATTCAATTGT
Found at i:97816106 original size:24 final size:26
Alignment explanation
Indices: 97816055--97816106 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
97816045 ATCAATAGAA
**
97816055 ATTATAAGTTGAGAATAATTTATTTTG
1 ATTATAAGTTGAGAAT-ATTTAGCTTG
97816082 ATTATAAGTTGAGAAT-TTT-GCTTG
1 ATTATAAGTTGAGAATATTTAGCTTG
97816106 A
1 A
97816107 AGACAAGCAA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
24 4 0.17
25 3 0.13
27 16 0.70
ACGTcount: A:0.35, C:0.02, G:0.17, T:0.46
Consensus pattern (26 bp):
ATTATAAGTTGAGAATATTTAGCTTG
Found at i:97830230 original size:53 final size:52
Alignment explanation
Indices: 97830160--97830275 Score: 187
Period size: 53 Copynumber: 2.2 Consensus size: 52
97830150 TTAACTTATA
* * *
97830160 TAAATCAATAGTGGTTAATTTTTATGACTTTTACGATTTAGTCCTTTTTTTCT
1 TAAATCAATAGTGGTTAAGTTTTATGACTTTTACGATTTAGACC-TTTTTCCT
97830213 TAAATCAATAGTGGTTAAGTTTTATGACTTTTACGATTTAGACCTTTTTCCT
1 TAAATCAATAGTGGTTAAGTTTTATGACTTTTACGATTTAGACCTTTTTCCT
*
97830265 TAAATAAATAG
1 TAAATCAATAG
97830276 ACAAACGACG
Statistics
Matches: 59, Mismatches: 4, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
52 17 0.29
53 42 0.71
ACGTcount: A:0.29, C:0.11, G:0.12, T:0.47
Consensus pattern (52 bp):
TAAATCAATAGTGGTTAAGTTTTATGACTTTTACGATTTAGACCTTTTTCCT
Found at i:97831086 original size:16 final size:16
Alignment explanation
Indices: 97831061--97831095 Score: 61
Period size: 16 Copynumber: 2.2 Consensus size: 16
97831051 AAAATGCGAA
97831061 CCTATCGAAGAGCAAG
1 CCTATCGAAGAGCAAG
*
97831077 CCTATTGAAGAGCAAG
1 CCTATCGAAGAGCAAG
97831093 CCT
1 CCT
97831096 GTCAAAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.34, C:0.26, G:0.23, T:0.17
Consensus pattern (16 bp):
CCTATCGAAGAGCAAG
Found at i:97831103 original size:16 final size:16
Alignment explanation
Indices: 97831061--97831103 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
97831051 AAAATGCGAA
*
97831061 CCTATCGAAGAGCAAG
1 CCTATCAAAGAGCAAG
**
97831077 CCTATTGAAGAGCAAG
1 CCTATCAAAGAGCAAG
*
97831093 CCTGTCAAAGA
1 CCTATCAAAGA
97831104 AAAAGTTAAA
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.37, C:0.23, G:0.23, T:0.16
Consensus pattern (16 bp):
CCTATCAAAGAGCAAG
Found at i:97831198 original size:28 final size:28
Alignment explanation
Indices: 97831166--97831288 Score: 138
Period size: 28 Copynumber: 4.4 Consensus size: 28
97831156 AAGTTGGTGT
* * *
97831166 AAGCCAAAGCGGCAGACAGTTTAAATGC
1 AAGCCAAAGTGGCAGACAATCTAAATGC
* *
97831194 AAGCCAAAAGTGACAGACAATCTAAGTGC
1 AAGCC-AAAGTGGCAGACAATCTAAATGC
* *
97831223 AAGACAAAGTGGCAGACAATCTAAATGT
1 AAGCCAAAGTGGCAGACAATCTAAATGC
** * *
97831251 AAGCCAAAGTGGTGGACATTCTAAATGT
1 AAGCCAAAGTGGCAGACAATCTAAATGC
97831279 AAGCCAAAGT
1 AAGCCAAAGT
97831289 TGGTGCAAGC
Statistics
Matches: 81, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
28 59 0.73
29 22 0.27
ACGTcount: A:0.42, C:0.18, G:0.23, T:0.17
Consensus pattern (28 bp):
AAGCCAAAGTGGCAGACAATCTAAATGC
Found at i:97831383 original size:16 final size:16
Alignment explanation
Indices: 97831364--97831407 Score: 61
Period size: 16 Copynumber: 2.8 Consensus size: 16
97831354 GATAGTTTAA
*
97831364 GTGCAAGTTAAACTTG
1 GTGCAAGTCAAACTTG
97831380 GTGCAAGTCAAACTTG
1 GTGCAAGTCAAACTTG
* *
97831396 GTTCAAGCCAAA
1 GTGCAAGTCAAA
97831408 GTGGCGGAGA
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.34, C:0.18, G:0.23, T:0.25
Consensus pattern (16 bp):
GTGCAAGTCAAACTTG
Found at i:97833611 original size:37 final size:41
Alignment explanation
Indices: 97833570--97833652 Score: 102
Period size: 37 Copynumber: 2.1 Consensus size: 41
97833560 AATAGTTTAA
*
97833570 TATTAAATTAA-ATTTAA-TAATTATCTT-AATATT-ATTT
1 TATTAAATTAATATTAAAGTAATTATCTTAAATATTAATTT
* *
97833607 TATTAATTTAATATTAAAGTGATTATCTTAAATATTAAATTT
1 TATTAAATTAATATTAAAGTAATTATCTTAAATATT-AATTT
97833649 TATT
1 TATT
97833653 TTGTAGATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 5
0.83 0.07 0.11
Matches are distributed among these distances:
37 10 0.26
38 5 0.13
39 9 0.24
40 6 0.16
42 8 0.21
ACGTcount: A:0.42, C:0.02, G:0.02, T:0.53
Consensus pattern (41 bp):
TATTAAATTAATATTAAAGTAATTATCTTAAATATTAATTT
Found at i:97833621 original size:11 final size:11
Alignment explanation
Indices: 97833548--97833623 Score: 54
Period size: 11 Copynumber: 6.8 Consensus size: 11
97833538 ATTCCAAAAA
*
97833548 TAATATTATTT
1 TAATATTAATT
97833559 TAATAGTTTAATAT
1 TAATA--TTAAT-T
97833573 TAA-ATTAAATT
1 TAATATT-AATT
97833584 TAATAATT-ATCT
1 TAAT-ATTAAT-T
97833596 TAATATT-ATT
1 TAATATTAATT
97833606 T--TATTAATT
1 TAATATTAATT
97833615 TAATATTAA
1 TAATATTAA
97833624 AGTGATTATC
Statistics
Matches: 54, Mismatches: 1, Indels: 20
0.72 0.01 0.27
Matches are distributed among these distances:
8 4 0.07
9 4 0.07
10 2 0.04
11 24 0.44
12 8 0.15
13 8 0.15
14 4 0.07
ACGTcount: A:0.43, C:0.01, G:0.01, T:0.54
Consensus pattern (11 bp):
TAATATTAATT
Found at i:97833741 original size:19 final size:20
Alignment explanation
Indices: 97833717--97833754 Score: 69
Period size: 20 Copynumber: 1.9 Consensus size: 20
97833707 ATTTATCAAA
97833717 ATAAATA-TTATATTAATTG
1 ATAAATATTTATATTAATTG
97833736 ATAAATATTTATATTAATT
1 ATAAATATTTATATTAATT
97833755 TAATATTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
19 7 0.39
20 11 0.61
ACGTcount: A:0.47, C:0.00, G:0.03, T:0.50
Consensus pattern (20 bp):
ATAAATATTTATATTAATTG
Found at i:97834073 original size:15 final size:15
Alignment explanation
Indices: 97834053--97834082 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
97834043 AGACTACTCG
97834053 GTTTTGGAAAATTTT
1 GTTTTGGAAAATTTT
97834068 GTTTTGGAAAATTTT
1 GTTTTGGAAAATTTT
97834083 TAAAGCTCTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.20, T:0.53
Consensus pattern (15 bp):
GTTTTGGAAAATTTT
Found at i:97846981 original size:25 final size:25
Alignment explanation
Indices: 97846949--97847000 Score: 61
Period size: 25 Copynumber: 2.1 Consensus size: 25
97846939 GTTTATCTTG
* *
97846949 TAAGTAAATATTATATT-ATTTTAA
1 TAAGTAAATATTAGATTAAATTTAA
*
97846973 TAAGATAAATGTTAGATTAAATTTAA
1 TAAG-TAAATATTAGATTAAATTTAA
97846999 TA
1 TA
97847001 TTAAAGTGAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
24 4 0.17
25 11 0.48
26 8 0.35
ACGTcount: A:0.48, C:0.00, G:0.08, T:0.44
Consensus pattern (25 bp):
TAAGTAAATATTAGATTAAATTTAA
Found at i:97848775 original size:28 final size:28
Alignment explanation
Indices: 97848743--97848838 Score: 97
Period size: 28 Copynumber: 3.4 Consensus size: 28
97848733 AAAGTCCAAG
* *
97848743 TGCAAGCCAAAGGGACGGATAGTCTAAA
1 TGCAAGCCAAAGGGACGGACAATCTAAA
* * *
97848771 TGCAAGCCAATGTGG-TGGACAATCTAAG
1 TGCAAGCCAAAG-GGACGGACAATCTAAA
* *
97848799 TGCAAGCCAAA-GTAGCAGACAATCTAAA
1 TGCAAGCCAAAGGGA-CGGACAATCTAAA
97848827 TGCAAGCCAAAG
1 TGCAAGCCAAAG
97848839 TGGGTATAAG
Statistics
Matches: 54, Mismatches: 10, Indels: 7
0.76 0.14 0.10
Matches are distributed among these distances:
26 1 0.02
28 51 0.94
29 2 0.04
ACGTcount: A:0.40, C:0.20, G:0.25, T:0.16
Consensus pattern (28 bp):
TGCAAGCCAAAGGGACGGACAATCTAAA
Found at i:97848839 original size:28 final size:28
Alignment explanation
Indices: 97848765--97848839 Score: 105
Period size: 28 Copynumber: 2.7 Consensus size: 28
97848755 GGACGGATAG
* * **
97848765 TCTAAATGCAAGCCAATGTGGTGGACAA
1 TCTAAATGCAAGCCAAAGTAGCAGACAA
*
97848793 TCTAAGTGCAAGCCAAAGTAGCAGACAA
1 TCTAAATGCAAGCCAAAGTAGCAGACAA
97848821 TCTAAATGCAAGCCAAAGT
1 TCTAAATGCAAGCCAAAGT
97848840 GGGTATAAGC
Statistics
Matches: 41, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
28 41 1.00
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (28 bp):
TCTAAATGCAAGCCAAAGTAGCAGACAA
Found at i:97848865 original size:44 final size:46
Alignment explanation
Indices: 97848817--97848932 Score: 155
Period size: 46 Copynumber: 2.6 Consensus size: 46
97848807 AAAGTAGCAG
*
97848817 ACAATCTAAATGCAAGCC-AAAGTGGGTATAAGCCAAAA-CGACAA
1 ACAATCTAAATGCAAGCCAAAAGTGGGTACAAGCCAAAAGCGACAA
* * * * *
97848861 ACAATCTAAATGCAAGCCAAAAGTGGGTGCATGCCAAAAGTGGCGA
1 ACAATCTAAATGCAAGCCAAAAGTGGGTACAAGCCAAAAGCGACAA
*
97848907 ACAGTCTAAATGCAAGCCAAAAGTGG
1 ACAATCTAAATGCAAGCCAAAAGTGG
97848933 TGACAGACTA
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
44 18 0.29
45 17 0.27
46 28 0.44
ACGTcount: A:0.43, C:0.20, G:0.22, T:0.15
Consensus pattern (46 bp):
ACAATCTAAATGCAAGCCAAAAGTGGGTACAAGCCAAAAGCGACAA
Found at i:97848896 original size:17 final size:17
Alignment explanation
Indices: 97848871--97848903 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
97848861 ACAATCTAAA
97848871 TGCAAGCCAAAAGTGGG
1 TGCAAGCCAAAAGTGGG
*
97848888 TGCATGCCAAAAGTGG
1 TGCAAGCCAAAAGTGG
97848904 CGAACAGTCT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.33, C:0.18, G:0.33, T:0.15
Consensus pattern (17 bp):
TGCAAGCCAAAAGTGGG
Found at i:97848948 original size:28 final size:29
Alignment explanation
Indices: 97848887--97848955 Score: 95
Period size: 28 Copynumber: 2.4 Consensus size: 29
97848877 CCAAAAGTGG
* *
97848887 GTGCATGCCAAAAGTGGCGAACAGTCTAA
1 GTGCAAGCCAAAAGTGGCGAACAGACTAA
* *
97848916 ATGCAAGCCAAAAGTGGTG-ACAGACTAA
1 GTGCAAGCCAAAAGTGGCGAACAGACTAA
97848944 GTGCAAGCCAAA
1 GTGCAAGCCAAA
97848956 CTGGCAAACT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
28 19 0.54
29 16 0.46
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.14
Consensus pattern (29 bp):
GTGCAAGCCAAAAGTGGCGAACAGACTAA
Found at i:97859116 original size:45 final size:44
Alignment explanation
Indices: 97859032--97859135 Score: 127
Period size: 45 Copynumber: 2.3 Consensus size: 44
97859022 ACTATCTAAG
* *
97859032 TGCAAGCCAAAGTTGGTGCAAGCCAAAGTGACGGGTAGTCAAAA
1 TGCAAGCCAAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
* ** * *
97859076 TGCAAGCCAAAAGTGGGTGTAAGCCAAAGTGGTGGATAGTCCAAG
1 TGCAAGCC-AAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
*
97859121 TTCAAGCCAAAGTGG
1 TGCAAGCCAAAGTGG
97859136 CAGACAGTCC
Statistics
Matches: 51, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
44 15 0.29
45 36 0.71
ACGTcount: A:0.35, C:0.17, G:0.31, T:0.17
Consensus pattern (44 bp):
TGCAAGCCAAAGTGGGTGCAAGCCAAAGTGACGGATAGTCAAAA
Found at i:97859128 original size:28 final size:28
Alignment explanation
Indices: 97859096--97859178 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 28
97859086 AAGTGGGTGT
* *
97859096 AAGCCAAAGTGGTGGATAGTCCAAGTTC
1 AAGCCAAAGTGGTGGACAGTCCAAGTGC
**
97859124 AAGCCAAAGTGGCAGACAGTCCAAGTGC
1 AAGCCAAAGTGGTGGACAGTCCAAGTGC
* *
97859152 AAGCCAAAATGATGGACAGTCCAAGTG
1 AAGCCAAAGTGGTGGACAGTCCAAGTG
97859179 TAAGACACTC
Statistics
Matches: 47, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 47 1.00
ACGTcount: A:0.36, C:0.20, G:0.28, T:0.16
Consensus pattern (28 bp):
AAGCCAAAGTGGTGGACAGTCCAAGTGC
Found at i:97860207 original size:19 final size:19
Alignment explanation
Indices: 97860162--97860206 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 19
97860152 TGTAAAATTC
*
97860162 TATA-TTTTAAATTTATTA
1 TATATTTTTAAATATATTA
97860180 TATATTTTTAAATAT-TTA
1 TATATTTTTAAATATATTA
*
97860198 TGTATTTTT
1 TATATTTTT
97860207 TTTAGAATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.64
Consensus pattern (19 bp):
TATATTTTTAAATATATTA
Found at i:97867970 original size:40 final size:40
Alignment explanation
Indices: 97867916--97868010 Score: 129
Period size: 40 Copynumber: 2.3 Consensus size: 40
97867906 GTAAAAATTA
* *
97867916 TAAAACACGGAGCAATAGCGGCG-TTTTATTAAAAACGCCGC
1 TAAAA-ACAGAGCAATAGCGGCGCTTTTAGT-AAAACGCCGC
*
97867957 TAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGC
97867997 TAAAAACCAGAGCA
1 TAAAAA-CAGAGCA
97868011 TTAGAAACTA
Statistics
Matches: 49, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
40 32 0.65
41 17 0.35
ACGTcount: A:0.39, C:0.22, G:0.22, T:0.17
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGCTTTTAGTAAAACGCCGC
Found at i:97869241 original size:14 final size:15
Alignment explanation
Indices: 97869212--97869242 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
97869202 CTAATTTTTC
97869212 CCCCAAATCGAAAAT
1 CCCCAAATCGAAAAT
97869227 CCCCAAATC-AAAAT
1 CCCCAAATCGAAAAT
97869241 CC
1 CC
97869243 TTCCACCATT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 7 0.44
15 9 0.56
ACGTcount: A:0.45, C:0.39, G:0.03, T:0.13
Consensus pattern (15 bp):
CCCCAAATCGAAAAT
Found at i:97869329 original size:14 final size:14
Alignment explanation
Indices: 97869310--97869356 Score: 85
Period size: 14 Copynumber: 3.4 Consensus size: 14
97869300 ATTTCTTGCT
97869310 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
97869324 TCTCTAAATCTCCA
1 TCTCTAAATCTCCA
*
97869338 TCTCTAAATCTCTA
1 TCTCTAAATCTCCA
97869352 TCTCT
1 TCTCT
97869357 TTGATTTTCG
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
14 32 1.00
ACGTcount: A:0.26, C:0.34, G:0.00, T:0.40
Consensus pattern (14 bp):
TCTCTAAATCTCCA
Found at i:97873662 original size:43 final size:43
Alignment explanation
Indices: 97873613--97873698 Score: 136
Period size: 43 Copynumber: 2.0 Consensus size: 43
97873603 GGTTATATTT
** * *
97873613 TTTAGCGGCGTTTGTGGGAAAAGCGTCGCTAAAGGTCCTGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
97873656 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
1 TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
97873699 GCCGCAAAAT
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
43 39 1.00
ACGTcount: A:0.22, C:0.19, G:0.33, T:0.27
Consensus pattern (43 bp):
TTTAGCGGCGTTTGTGAAAAAAGCGCCGCTAAAGGTCATGGTC
Found at i:97874999 original size:12 final size:12
Alignment explanation
Indices: 97874982--97875091 Score: 51
Period size: 12 Copynumber: 8.0 Consensus size: 12
97874972 GACTGTTCGC
97874982 CACTTTGGATTG
1 CACTTTGGATTG
97874994 CACTTTGGATTG
1 CACTTTGGATTG
97875006 TCTATCATTTTGGATTG
1 -C-A-C--TTTGGATTG
97875023 CAC-TTGGACTGCCTG
1 CACTTTGGA-T---TG
* *
97875038 TCATTTTGGCTTG
1 -CACTTTGGATTG
97875051 CACTTTGGACTGTCCG
1 CACTTTGGA-T-T--G
*
97875067 CCACTTTGGCTTG
1 -CACTTTGGATTG
97875080 CACTTTGGATTG
1 CACTTTGGATTG
97875092 TCTGTCACTT
Statistics
Matches: 76, Mismatches: 6, Indels: 32
0.67 0.05 0.28
Matches are distributed among these distances:
11 5 0.07
12 31 0.41
13 5 0.07
14 3 0.04
15 5 0.07
16 6 0.08
17 21 0.28
ACGTcount: A:0.14, C:0.22, G:0.24, T:0.41
Consensus pattern (12 bp):
CACTTTGGATTG
Found at i:97875016 original size:57 final size:57
Alignment explanation
Indices: 97874929--97875102 Score: 181
Period size: 57 Copynumber: 3.1 Consensus size: 57
97874919 AATTTGCCTT
* *
97874929 TTTGGCTTGCA-TTTGGACTGTTTATCATTTTGGCTTGCATTTGGACTG-TTCGCCAC
1 TTTGGCTTGCACTTTGGACTGTCTATCATTTTGGCTTGCATTTGGACTGCCT-GCCAC
* * * * * *
97874985 TTTGGATTGCACTTTGGATTGTCTATCATTTTGGATTGCACTTGGACTGCCTGTCAT
1 TTTGGCTTGCACTTTGGACTGTCTATCATTTTGGCTTGCATTTGGACTGCCTGCCAC
*** * * * *
97875042 TTTGGCTTGCACTTTGGACTGTCCGCCACTTTGGCTTGCACTTTGGATTGTCTGTCAC
1 TTTGGCTTGCACTTTGGACTGTCTATCATTTTGGCTTGCA-TTTGGACTGCCTGCCAC
97875100 TTT
1 TTT
97875103 TGCATGATTG
Statistics
Matches: 96, Mismatches: 19, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
56 10 0.10
57 69 0.72
58 17 0.18
ACGTcount: A:0.13, C:0.21, G:0.23, T:0.44
Consensus pattern (57 bp):
TTTGGCTTGCACTTTGGACTGTCTATCATTTTGGCTTGCATTTGGACTGCCTGCCAC
Found at i:97875017 original size:29 final size:29
Alignment explanation
Indices: 97874928--97875104 Score: 191
Period size: 29 Copynumber: 6.2 Consensus size: 29
97874918 CAATTTGCCT
* *
97874928 TTTTGGCTTGCA-TTTGGACTGTTTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
*
97874956 TTTTGGCTTGCA-TTTGGACTGT-TCGCCA
1 TTTTGGCTTGCACTTTGGACTGTCT-GTCA
* * * *
97874984 CTTTGGATTGCACTTTGGATTGTCTATCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
97875013 TTTTGGATTGCAC-TTGGACTGCCTGTCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
97875041 TTTTGGCTTGCACTTTGGACTGTCCGCCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
* *
97875070 CTTTGGCTTGCACTTTGGATTGTCTGTCA
1 TTTTGGCTTGCACTTTGGACTGTCTGTCA
97875099 CTTTTG
1 -TTTTG
97875105 CATGATTGGC
Statistics
Matches: 124, Mismatches: 20, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
27 1 0.01
28 58 0.47
29 60 0.48
30 5 0.04
ACGTcount: A:0.12, C:0.20, G:0.23, T:0.44
Consensus pattern (29 bp):
TTTTGGCTTGCACTTTGGACTGTCTGTCA
Found at i:97877245 original size:16 final size:16
Alignment explanation
Indices: 97877223--97877290 Score: 109
Period size: 16 Copynumber: 4.2 Consensus size: 16
97877213 TTTGGTTCGC
*
97877223 TGTATTGGATTAGACG
1 TGTATTGGATTAGAGG
* *
97877239 CGTATTGGATTAAAGG
1 TGTATTGGATTAGAGG
97877255 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97877271 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
97877287 TGTA
1 TGTA
97877291 ATAGCAAATC
Statistics
Matches: 47, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 47 1.00
ACGTcount: A:0.26, C:0.03, G:0.34, T:0.37
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:97877547 original size:18 final size:17
Alignment explanation
Indices: 97877526--97877560 Score: 52
Period size: 18 Copynumber: 2.0 Consensus size: 17
97877516 TTATTATTAA
*
97877526 ATATATTTTAATTAAAAT
1 ATATAATTTAA-TAAAAT
97877544 ATATAATTTAATAAAAT
1 ATATAATTTAATAAAAT
97877561 TCTTAATAAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 6 0.38
18 10 0.62
ACGTcount: A:0.54, C:0.00, G:0.00, T:0.46
Consensus pattern (17 bp):
ATATAATTTAATAAAAT
Found at i:97877614 original size:157 final size:157
Alignment explanation
Indices: 97877420--97877729 Score: 575
Period size: 157 Copynumber: 2.0 Consensus size: 157
97877410 CCCTTAACAT
* *
97877420 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTATTATTAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
* *
97877485 TAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
97877550 TTTAATAAAATTCTTAATAATTAGCAG
131 TTTAATAAAATTCTTAATAATTAGCAG
*
97877577 AAATTTGTTTTGGTAAATTATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
1 AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
97877642 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
66 TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
97877707 TTTAATAAAATTCTTAATAATTA
131 TTTAATAAAATTCTTAATAATTA
97877730 ATATTCTTAT
Statistics
Matches: 148, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
157 148 1.00
ACGTcount: A:0.45, C:0.03, G:0.05, T:0.48
Consensus pattern (157 bp):
AAATTTGTTTTGGTAAATGATTATTGTTATTGTTATTTAAATTTTAATAAGATTATTAATATCAA
TAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATAA
TTTAATAAAATTCTTAATAATTAGCAG
Found at i:97877700 original size:16 final size:16
Alignment explanation
Indices: 97877663--97877704 Score: 52
Period size: 15 Copynumber: 2.7 Consensus size: 16
97877653 TTAATCATAT
*
97877663 TTAAACATA-ATTATTA
1 TTAAA-ATATATTATAA
97877679 TT-AAATATATTATAA
1 TTAAAATATATTATAA
97877694 TTAAAATATAT
1 TTAAAATATAT
97877705 AATTTAATAA
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
14 3 0.13
15 10 0.43
16 10 0.43
ACGTcount: A:0.52, C:0.02, G:0.00, T:0.45
Consensus pattern (16 bp):
TTAAAATATATTATAA
Found at i:97877711 original size:14 final size:15
Alignment explanation
Indices: 97877672--97877713 Score: 52
Period size: 15 Copynumber: 2.9 Consensus size: 15
97877662 TTTAAACATA
*
97877672 ATTATTATTAAATAT
1 ATTATAATTAAATAT
97877687 ATTATAATTAAA-AT
1 ATTATAATTAAATAT
*
97877701 A-TATAATTTAATA
1 ATTATAATTAAATA
97877714 AAATTCTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
13 9 0.38
14 4 0.17
15 11 0.46
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (15 bp):
ATTATAATTAAATAT
Found at i:97877726 original size:82 final size:82
Alignment explanation
Indices: 97877481--97877732 Score: 219
Period size: 82 Copynumber: 3.2 Consensus size: 82
97877471 ATTATTATTA
* *
97877481 TTAATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATAT
1 TTAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATAT
97877546 ATAATTTAATAAAATTC
66 ATAATTTAATAAAATTC
* * * *
97877563 TTAATAATTAGCAGA-AATTT-GT--T-TTGGT-AA-ATTATTATTGTT--AT-TGTTAT--TTA
1 TTAATAA-TA--A-ATAATTTAATCATATT--TAAACATAATTATTATTAAATATATTATAATTA
* * * * *
97877616 AATTTTAATAAGATTATTAATA-TC
60 AAATAT-ATAA-TTTAATAAAATTC
97877640 --AATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATAT
1 TTAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATAT
97877703 ATAATTTAATAAAATTC
66 ATAATTTAATAAAATTC
*
97877720 TTAATAATTAATA
1 TTAATAATAAATA
97877733 TTCTTATATG
Statistics
Matches: 126, Mismatches: 21, Indels: 46
0.65 0.11 0.24
Matches are distributed among these distances:
71 1 0.01
72 6 0.05
73 1 0.01
74 3 0.02
75 8 0.06
76 19 0.15
77 6 0.05
78 13 0.10
79 14 0.11
80 6 0.05
81 19 0.15
82 20 0.16
83 3 0.02
84 1 0.01
85 5 0.04
86 1 0.01
ACGTcount: A:0.47, C:0.03, G:0.03, T:0.46
Consensus pattern (82 bp):
TTAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATAT
ATAATTTAATAAAATTC
Found at i:97877813 original size:157 final size:154
Alignment explanation
Indices: 97877484--97877814 Score: 346
Period size: 157 Copynumber: 2.1 Consensus size: 154
97877474 ATTATTATTA
*
97877484 ATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTTTAATTAAAATATATA
1 ATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATA
* * * * ** * * * * * *
97877549 ATTTAATAAAATTCTTAATAATTAGCAGAAATTTGTTTTGGTAAATTATTATTGTTATTGTTATT
66 ATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATTAATATTGATACTATAAAT
* * * *
97877614 TAAATTTTAATAAGATTATTAATAT
131 GAAAATTT-AGAAGATAATTAATAT
*
97877639 CAATAATAAATAATTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
1 --ATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATA
* **
97877704 TAATTTAATAAAATTCTTAATAATTAATATTCTTATATGAATTTACTCAAATCATAATATATGAT
64 TAATTTAATAAAATTCTTAATAATTAACA--CAAATATG-ATTTACT-AAAT--TAATAT-TGAT
97877769 ACTATAAATGAAAATTT-GAA-ATAATTAATAT
122 ACTATAAATGAAAATTTAGAAGATAATTAATAT
*
97877800 -TAA-ATATATTTTAAT
1 ATAATAAATATTTTAAT
97877815 TAAAATTTAT
Statistics
Matches: 144, Mismatches: 23, Indels: 14
0.80 0.13 0.08
Matches are distributed among these distances:
157 98 0.68
158 3 0.02
159 4 0.03
160 4 0.03
161 14 0.10
162 2 0.01
163 5 0.03
164 14 0.10
ACGTcount: A:0.47, C:0.04, G:0.04, T:0.45
Consensus pattern (154 bp):
ATAATAAATATTTTAATCATATTTAAACATAATTATTATTAAATATATTATAATTAAAATATATA
ATTTAATAAAATTCTTAATAATTAACACAAATATGATTTACTAAATTAATATTGATACTATAAAT
GAAAATTTAGAAGATAATTAATAT
Found at i:97889484 original size:7 final size:7
Alignment explanation
Indices: 97889472--97889499 Score: 56
Period size: 7 Copynumber: 4.0 Consensus size: 7
97889462 AAAGAAAAAG
97889472 AACAAAC
1 AACAAAC
97889479 AACAAAC
1 AACAAAC
97889486 AACAAAC
1 AACAAAC
97889493 AACAAAC
1 AACAAAC
97889500 GAAACAGAGG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 21 1.00
ACGTcount: A:0.71, C:0.29, G:0.00, T:0.00
Consensus pattern (7 bp):
AACAAAC
Found at i:97892933 original size:89 final size:89
Alignment explanation
Indices: 97892784--97892948 Score: 285
Period size: 89 Copynumber: 1.9 Consensus size: 89
97892774 TTAAAAACTA
* * * *
97892784 GTGGTGGAGGAGGTGTAAAGTTGGTTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
1 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
97892849 TTTTTCTTTTAGGAAACAGAATTG
66 TTTTTCTTTTAGGAAACAGAATTG
*
97892873 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAATAAGGAAACATATGT
1 GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
97892938 TTTTTCTTTTA
66 TTTTTCTTTTA
97892949 AAAAACAAGG
Statistics
Matches: 71, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 71 1.00
ACGTcount: A:0.38, C:0.08, G:0.23, T:0.31
Consensus pattern (89 bp):
GTGGTGAAAGAGGTGTAAAGCTGGCTGAAGACATTTTTACAAAAAAACAACAAGGAAACATATGT
TTTTTCTTTTAGGAAACAGAATTG
Found at i:97893495 original size:29 final size:29
Alignment explanation
Indices: 97893444--97893519 Score: 118
Period size: 29 Copynumber: 2.7 Consensus size: 29
97893434 AGTTTGCCTT
*
97893444 TTTAGCTTGCA-TTTGAACTGTTCGTCAC
1 TTTAGCTTGCACTTTGGACTGTTCGTCAC
97893472 TTTAGCTTGCACTTTGGACTGTTCGTCAC
1 TTTAGCTTGCACTTTGGACTGTTCGTCAC
* *
97893501 TTTGGCTTGTACTTTGGAC
1 TTTAGCTTGCACTTTGGAC
97893520 AACTTTCAAG
Statistics
Matches: 44, Mismatches: 3, Indels: 1
0.92 0.06 0.02
Matches are distributed among these distances:
28 11 0.25
29 33 0.75
ACGTcount: A:0.14, C:0.21, G:0.21, T:0.43
Consensus pattern (29 bp):
TTTAGCTTGCACTTTGGACTGTTCGTCAC
Found at i:97893909 original size:8 final size:8
Alignment explanation
Indices: 97893896--97893924 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
97893886 TGCCTAATCT
97893896 CATACATG
1 CATACATG
97893904 CATACATG
1 CATACATG
97893912 CATACATG
1 CATACATG
97893920 CATAC
1 CATAC
97893925 GCAAACAGAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.38, C:0.28, G:0.10, T:0.24
Consensus pattern (8 bp):
CATACATG
Found at i:97897635 original size:14 final size:14
Alignment explanation
Indices: 97897616--97897643 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97897606 ATTATTCTCA
97897616 ATTTATAATTTAAT
1 ATTTATAATTTAAT
97897630 ATTTATAATTTAAT
1 ATTTATAATTTAAT
97897644 TTATAAAAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
ATTTATAATTTAAT
Found at i:97898249 original size:4 final size:4
Alignment explanation
Indices: 97898232--97898261 Score: 51
Period size: 4 Copynumber: 7.5 Consensus size: 4
97898222 TTCTAACCTA
*
97898232 ATCT ATCT ACCT ATCT ATCT ATCT ATCT AT
1 ATCT ATCT ATCT ATCT ATCT ATCT ATCT AT
97898262 ATATATATAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.47
Consensus pattern (4 bp):
ATCT
Found at i:97898249 original size:12 final size:12
Alignment explanation
Indices: 97898227--97898261 Score: 52
Period size: 12 Copynumber: 2.8 Consensus size: 12
97898217 CACATTTCTA
97898227 ACCTAATCTATCT
1 ACCT-ATCTATCT
97898240 ACCTATCTATCT
1 ACCTATCTATCT
*
97898252 ATCTATCTAT
1 ACCTATCTAT
97898262 ATATATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
12 17 0.81
13 4 0.19
ACGTcount: A:0.29, C:0.29, G:0.00, T:0.43
Consensus pattern (12 bp):
ACCTATCTATCT
Found at i:97900727 original size:35 final size:35
Alignment explanation
Indices: 97900682--97900795 Score: 140
Period size: 35 Copynumber: 3.3 Consensus size: 35
97900672 TACTCTTTGT
* *
97900682 TTGGCGTGTTTCGGTTGGATTAGCTCTTTTGAGCA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
* *
97900717 TTGGTGTGTTTCAGTTGGATTAACTCTTTTGAGTA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
* * * *
97900752 TTGGCATGTTTCGGGTGGACTAACTCTTGTGAGTA
1 TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
97900787 CTTGG-GTGT
1 -TTGGCGTGT
97900796 GTTTTGGAGG
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
35 63 0.94
36 4 0.06
ACGTcount: A:0.14, C:0.12, G:0.31, T:0.43
Consensus pattern (35 bp):
TTGGCGTGTTTCGGTTGGATTAACTCTTTTGAGTA
Found at i:97901464 original size:15 final size:14
Alignment explanation
Indices: 97901444--97901476 Score: 57
Period size: 15 Copynumber: 2.3 Consensus size: 14
97901434 TATTTAAGCT
97901444 AAAGTAAGTAAATGG
1 AAAGTAAGTAAAT-G
97901459 AAAGTAAGTAAATG
1 AAAGTAAGTAAATG
97901473 AAAG
1 AAAG
97901477 GTTTCAAAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
14 5 0.28
15 13 0.72
ACGTcount: A:0.58, C:0.00, G:0.24, T:0.18
Consensus pattern (14 bp):
AAAGTAAGTAAATG
Found at i:97901762 original size:17 final size:16
Alignment explanation
Indices: 97901740--97901773 Score: 50
Period size: 17 Copynumber: 2.1 Consensus size: 16
97901730 CTTCACAATT
97901740 ATTGGAAGCTCGATCAG
1 ATTGGAAGCTCG-TCAG
*
97901757 ATTGGAAGTTCGTCAG
1 ATTGGAAGCTCGTCAG
97901773 A
1 A
97901774 GATCTATCTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 5 0.31
17 11 0.69
ACGTcount: A:0.29, C:0.15, G:0.29, T:0.26
Consensus pattern (16 bp):
ATTGGAAGCTCGTCAG
Found at i:97903777 original size:48 final size:48
Alignment explanation
Indices: 97903507--97903775 Score: 324
Period size: 48 Copynumber: 5.6 Consensus size: 48
97903497 GGTAAATTGT
* * * * * *
97903507 CGATGCCATGTTCCAAACATGGTCTTACACTGGCTCACATGTCGAGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * * * * *
97903555 CGATGCCATGTCCCAGACATGGTGTTACACTAGCTCTCGTCTCATTGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* *
97903603 CGATGCCATGTCCCAGACACGGTCTTACACTGGCTCTCATGAT-GTGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCAT-ATCGTGGC
* *
97903651 CGATGTCATATCCCAGACATGGTCTTACACTGGCTCTCATATCGTGTC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
* * * *
97903699 CGATGTCATGTCCTAGAGATGGTCTTACATTAGCTCTCATATCGTGGC
1 CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
*
97903747 CGATGTCATGTCCTAGACATGGTCTTACA
1 CGATGTCATGTCCCAGACATGGTCTTACA
97903776 TTGACGCACA
Statistics
Matches: 191, Mismatches: 28, Indels: 4
0.86 0.13 0.02
Matches are distributed among these distances:
47 2 0.01
48 188 0.98
49 1 0.01
ACGTcount: A:0.21, C:0.28, G:0.22, T:0.29
Consensus pattern (48 bp):
CGATGTCATGTCCCAGACATGGTCTTACACTGGCTCTCATATCGTGGC
Found at i:97904146 original size:30 final size:31
Alignment explanation
Indices: 97904107--97904164 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 31
97904097 ATAATTTATA
97904107 TTTTGACAAAATGATCATTTTACCCCTAGAC
1 TTTTGACAAAATGATCATTTTACCCCTAGAC
* **
97904138 TTTT-ACAAAATTATTGTTTTACCCCTA
1 TTTTGACAAAATGATCATTTTACCCCTA
97904165 AGCTCGTAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
30 20 0.83
31 4 0.17
ACGTcount: A:0.31, C:0.21, G:0.07, T:0.41
Consensus pattern (31 bp):
TTTTGACAAAATGATCATTTTACCCCTAGAC
Found at i:97911282 original size:48 final size:48
Alignment explanation
Indices: 97911225--97911498 Score: 218
Period size: 48 Copynumber: 5.7 Consensus size: 48
97911215 AGGGTGAATT
*
97911225 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCT-TACATGTCGAG
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCT-CATATCGAG
* * * * * * * *
97911273 GTCGATGCCATGTTCTAGACATGGTGTTACACTAGCTCTCATCT-TATT
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGA-G
* * * *
97911321 GTCGATGTCAT-TTCTCAGACATGGTCTTACACTGGCTCTCATGAT-GTG
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCTCAT-ATCGAG
* * * * * *
97911369 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAAC
1 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAG
* * * * **
97911417 ACCGATGCCATG-TCTCAGACATGGTCTTACGCTGGCTCTTATATCTTG
1 GCCGATGCCATGTTC-CAAACATGGTCTTACACTGGCTCTCATATCGAG
*
97911465 GCCGATGCCATGTCCCAGAA-ATGGTCTTACACTG
1 GCCGATGCCATGTTCCA-AACATGGTCTTACACTG
97911499 ACACACATAT
Statistics
Matches: 176, Mismatches: 41, Indels: 18
0.75 0.17 0.08
Matches are distributed among these distances:
47 7 0.04
48 163 0.93
49 6 0.03
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (48 bp):
GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTCTCATATCGAG
Found at i:97911391 original size:96 final size:97
Alignment explanation
Indices: 97911226--97911510 Score: 296
Period size: 96 Copynumber: 3.0 Consensus size: 97
97911216 GGGTGAATTG
* * * *
97911226 CCGATGCCATGT-TCCAAACATGGTCTTACACTGGCT-TACATG-TCGAGGTCGATGCCATGTTC
1 CCGATGCCATGTCT-CAGACATGGTCTTACACTGGCTCT-CATGATCGTGGCCGATGCCATGTCC
* * * * * * * ***
97911288 TAGACATGGTGTTACACTAGCTCTCATCTTATTG
64 CAAACATGGTCTTACACTAGCCCACATATCAACA
* * *
97911322 TCGATGTCATTTCTCAGACATGGTCTTACACTGGCTCTCATGAT-GTGGCCGATGCCATGTCCCA
1 CCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
97911386 AACATGGTCTTACACTAGCCCACATATCAACA
66 AACATGGTCTTACACTAGCCCACATATCAACA
* * *
97911418 CCGATGCCATGTCTCAGACATGGTCTTACGCTGGCTCTTAT-ATCTTGGCCGATGCCATGTCCCA
1 CCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
*
97911482 GAA-ATGGTCTTACACT-GACACACATATCA
66 -AACATGGTCTTACACTAG-CCCACATATCA
97911511 CCCAAATATC
Statistics
Matches: 159, Mismatches: 24, Indels: 12
0.82 0.12 0.06
Matches are distributed among these distances:
95 3 0.02
96 151 0.95
97 5 0.03
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (97 bp):
CCGATGCCATGTCTCAGACATGGTCTTACACTGGCTCTCATGATCGTGGCCGATGCCATGTCCCA
AACATGGTCTTACACTAGCCCACATATCAACA
Found at i:97911489 original size:144 final size:144
Alignment explanation
Indices: 97911225--97911498 Score: 336
Period size: 144 Copynumber: 1.9 Consensus size: 144
97911215 AGGGTGAATT
* * ** * * ***
97911225 GCCGATGCCATGTTCCAAACATGGTCTTACACTGGCTTACATGTCGAGGTCGATGCCATGTTCTA
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATGTTCTA
* * * * * * * *
97911290 GACATGGTGTTACACTAGCTCTCATCTTATTGTCGATGTCATTTCTCAGACATGGTCTTACACTG
66 GACATGGTCTTACACTAGCTCTCATATTATGGCCGATGCCATGTCCCAGAAATGGTCTTACACTG
97911355 GCTCTCATGATGTG
131 GCTCTCATGATGTG
97911369 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATG-TCTC
1 GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATGTTCT-
* * *
97911433 AGACATGGTCTTACGCTGGCTCTTATATCT-TGGCCGATGCCATGTCCCAGAAATGGTCTTACAC
65 AGACATGGTCTTACACTAGCTCTCATAT-TATGGCCGATGCCATGTCCCAGAAATGGTCTTACAC
97911497 TG
129 TG
97911499 ACACACATAT
Statistics
Matches: 108, Mismatches: 20, Indels: 4
0.82 0.15 0.03
Matches are distributed among these distances:
143 3 0.03
144 104 0.96
145 1 0.01
ACGTcount: A:0.22, C:0.27, G:0.20, T:0.30
Consensus pattern (144 bp):
GCCGATGCCATGTCCCAAACATGGTCTTACACTAGCCCACATATCAACACCGATGCCATGTTCTA
GACATGGTCTTACACTAGCTCTCATATTATGGCCGATGCCATGTCCCAGAAATGGTCTTACACTG
GCTCTCATGATGTG
Found at i:97919392 original size:24 final size:23
Alignment explanation
Indices: 97919334--97919392 Score: 73
Period size: 23 Copynumber: 2.5 Consensus size: 23
97919324 GACCTGATGG
*
97919334 ACAGTAAGCTCTATTGAGCTGAA
1 ACAGTAAGCTCTAATGAGCTGAA
* *
97919357 ACGGTAACCTCTAATGAGCTGAAA
1 ACAGTAAGCTCTAATGAGCTG-AA
*
97919381 ATAGTAAGCTCT
1 ACAGTAAGCTCT
97919393 TACGAGTTGA
Statistics
Matches: 29, Mismatches: 6, Indels: 1
0.81 0.17 0.03
Matches are distributed among these distances:
23 18 0.62
24 11 0.38
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (23 bp):
ACAGTAAGCTCTAATGAGCTGAA
Found at i:97922346 original size:22 final size:22
Alignment explanation
Indices: 97922321--97922390 Score: 63
Period size: 22 Copynumber: 3.2 Consensus size: 22
97922311 ATTGAAATGT
97922321 ATGCTAGCATGTTATACTTAGC
1 ATGCTAGCATGTTATACTTAGC
* * ** *
97922343 ATGCGA-CATGATATTGAAAT-GT
1 ATGCTAGCATGTTA-T-ACTTAGC
97922365 ATGCTAGCATGTTATACTTAGC
1 ATGCTAGCATGTTATACTTAGC
97922387 ATGC
1 ATGC
97922391 GTATAAATAT
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 8 0.24
22 18 0.53
23 8 0.24
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34
Consensus pattern (22 bp):
ATGCTAGCATGTTATACTTAGC
Found at i:97922366 original size:44 final size:44
Alignment explanation
Indices: 97922303--97922391 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
97922293 CTTGTTCTGT
97922303 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
1 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
97922347 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
1 GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
97922391 G
1 G
97922392 TATAAATATT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.31, C:0.13, G:0.21, T:0.34
Consensus pattern (44 bp):
GACATGATATTGAAATGTATGCTAGCATGTTATACTTAGCATGC
Found at i:97922375 original size:23 final size:23
Alignment explanation
Indices: 97922305--97922375 Score: 67
Period size: 22 Copynumber: 3.2 Consensus size: 23
97922295 TGTTCTGTGA
97922305 CATGATATTGAAATGTATGCTAG
1 CATGATATTGAAATGTATGCTAG
* ** * *
97922328 CATGTTA-T-ACTTAGCATGCGA-
1 CATGATATTGAAAT-GTATGCTAG
97922349 CATGATATTGAAATGTATGCTAG
1 CATGATATTGAAATGTATGCTAG
97922372 CATG
1 CATG
97922376 TTATACTTAG
Statistics
Matches: 34, Mismatches: 10, Indels: 8
0.65 0.19 0.15
Matches are distributed among these distances:
21 8 0.24
22 14 0.41
23 12 0.35
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (23 bp):
CATGATATTGAAATGTATGCTAG
Found at i:97922644 original size:39 final size:38
Alignment explanation
Indices: 97922584--97922677 Score: 109
Period size: 39 Copynumber: 2.4 Consensus size: 38
97922574 CGGTACCTTA
* * *
97922584 TGGTGTATAGGGTTGGATGGGTTGA-TTTATCTCCATACT
1 TGGTGTGTAGGGCTGGATGGGTTGATTTTATC-CC-TACG
*
97922623 TGGTGTGTAGGGCTGGGTGGGTTGATTTTATCCCTACG
1 TGGTGTGTAGGGCTGGATGGGTTGATTTTATCCCTACG
* *
97922661 AGGTGTGTAGGGGTGGA
1 TGGTGTGTAGGGCTGGA
97922678 CGGAGATGGT
Statistics
Matches: 47, Mismatches: 7, Indels: 3
0.82 0.12 0.05
Matches are distributed among these distances:
38 17 0.36
39 24 0.51
40 6 0.13
ACGTcount: A:0.15, C:0.10, G:0.39, T:0.36
Consensus pattern (38 bp):
TGGTGTGTAGGGCTGGATGGGTTGATTTTATCCCTACG
Found at i:97939118 original size:29 final size:28
Alignment explanation
Indices: 97939084--97939141 Score: 82
Period size: 28 Copynumber: 2.0 Consensus size: 28
97939074 TACAGGGGTT
97939084 TTCACACGGCC-TGGCACACGTCCGTGTCC
1 TTCACACGGCCAT-G-ACACGTCCGTGTCC
*
97939113 TTCACATGGCCATGACACGTCCGTGTCC
1 TTCACACGGCCATGACACGTCCGTGTCC
97939141 T
1 T
97939142 AACCCGTATG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
28 15 0.56
29 11 0.41
30 1 0.04
ACGTcount: A:0.16, C:0.38, G:0.22, T:0.24
Consensus pattern (28 bp):
TTCACACGGCCATGACACGTCCGTGTCC
Found at i:97944340 original size:37 final size:37
Alignment explanation
Indices: 97944299--97944474 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
97944289 TTTGAGTACT
97944299 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
97944336 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
97944373 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
97944410 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
97944447 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
97944475 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:97944546 original size:45 final size:46
Alignment explanation
Indices: 97944437--97944560 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
97944427 GTGATAAGTG
* *
97944437 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
97944483 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
97944528 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
97944561 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:97952038 original size:37 final size:37
Alignment explanation
Indices: 97951997--97952172 Score: 298
Period size: 37 Copynumber: 4.8 Consensus size: 37
97951987 TTTGAGTACT
97951997 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
97952034 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
97952071 TCTGATCAAGAAACAAAGTGATAAGTGGTTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
*
97952108 TCTGATCAAGAGACAAAGTGATAAGTGGCTACACTTA
1 TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
** *
97952145 TCTGATCAAGTGATAAAGTGATAAGTGG
1 TCTGATCAAGAAACAAAGTGATAAGTGG
97952173 TAGCTTCAGC
Statistics
Matches: 134, Mismatches: 5, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
37 134 1.00
ACGTcount: A:0.39, C:0.14, G:0.21, T:0.26
Consensus pattern (37 bp):
TCTGATCAAGAAACAAAGTGATAAGTGGCTACACTTA
Found at i:97952244 original size:45 final size:46
Alignment explanation
Indices: 97952135--97952258 Score: 200
Period size: 46 Copynumber: 2.8 Consensus size: 46
97952125 GTGATAAGTG
* *
97952135 GCTACACTTATCTGATCAAGTGATAAAGTGATAAGTGGTAGCTTCA
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
*
97952181 GCTACACTTATCTGATCAAGTGGCAAAGTGATAAGTGGTAGCCT-A
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
97952226 GCTACACTTATCTGATCAAG-GAC-AAGTGATAAG
1 GCTACACTTATCTGATCAAGTGACAAAGTGATAAG
97952259 AGGTCATATG
Statistics
Matches: 74, Mismatches: 4, Indels: 3
0.91 0.05 0.04
Matches are distributed among these distances:
43 10 0.14
44 2 0.03
45 21 0.28
46 41 0.55
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (46 bp):
GCTACACTTATCTGATCAAGTGACAAAGTGATAAGTGGTAGCCTCA
Found at i:97958419 original size:50 final size:50
Alignment explanation
Indices: 97958343--97958477 Score: 216
Period size: 50 Copynumber: 2.7 Consensus size: 50
97958333 TATGGGGTGA
* * * *
97958343 GGTGCCGATGCCATGTCCCATACATGGTCTTACACAAGCTCTTGCATATC
1 GGTGCCGATGTCGTGTCCCAGACATGGTCTTACACAAGCTCTAGCATATC
* *
97958393 TGTGCCGATGTCGTGTCCCAGACATGGTCTTATACAAGCTCTAGCATATC
1 GGTGCCGATGTCGTGTCCCAGACATGGTCTTACACAAGCTCTAGCATATC
97958443 GGTGCCGATGTCGTGTCCCAGACATGGTCTTACAC
1 GGTGCCGATGTCGTGTCCCAGACATGGTCTTACAC
97958478 TGACACATCT
Statistics
Matches: 77, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
50 77 1.00
ACGTcount: A:0.21, C:0.28, G:0.23, T:0.28
Consensus pattern (50 bp):
GGTGCCGATGTCGTGTCCCAGACATGGTCTTACACAAGCTCTAGCATATC
Found at i:97958531 original size:46 final size:47
Alignment explanation
Indices: 97958446--97958616 Score: 196
Period size: 46 Copynumber: 3.7 Consensus size: 47
97958436 GCATATCGGT
* *
97958446 GCCGATGTCGTGTCCCAGACATGGTCTTACACTG--ACACATCTCATA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATCTCA-A
*
97958492 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGACACACATCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATCTC-AA
* * *
97958538 GCCAATG-CATGTCCCAGACAT-GTCTTACACT-AGCACTCGTCTCAA
1 GCCGATGCCATGTCCCAGACATGGTCTTACACTGA-CACACATCTCAA
97958583 TGCCGATGCCATGTCCCA-ACATGGTCTTACACTG
1 -GCCGATGCCATGTCCCAGACATGGTCTTACACTG
97958617 GCTTTCATAA
Statistics
Matches: 110, Mismatches: 7, Indels: 14
0.84 0.05 0.11
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 64 0.58
47 20 0.18
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.25
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACACATCTCAA
Found at i:97958639 original size:93 final size:92
Alignment explanation
Indices: 97958456--97958669 Score: 240
Period size: 93 Copynumber: 2.3 Consensus size: 92
97958446 GCCGATGTCG
97958456 TGTCCCAGACATGGTCTTACACT-G-ACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTA
1 TGTCCCAGACAT-GTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTA
*
97958519 CACTGACACACATCTCGAGGCCAATGCA
65 CACTGACACACATATCGAGGCCAATGCA
* *
97958547 TGTCCCAGACATGTCTTACACTAGCACTCGTCTCA-ATGCCGATGCCATGTCCCA-ACATGGTCT
1 TGTCCCAGACATGTCTTACACTAGCACACATCTCATA-GCCGATG-CATGTCCCAGACAT-GTCT
* *** * **
97958610 TACACTGGCTTTCATAAT-GTGGCTGATGCA
63 TACACTGACACACAT-ATCGAGGCCAATGCA
* *
97958640 TGTCCTAGACATGTCTTACACTAGCTCACA
1 TGTCCCAGACATGTCTTACACTAGCACACA
97958670 AAATTGACCC
Statistics
Matches: 103, Mismatches: 14, Indels: 10
0.81 0.11 0.08
Matches are distributed among these distances:
90 10 0.10
91 14 0.14
92 19 0.18
93 59 0.57
94 1 0.01
ACGTcount: A:0.25, C:0.30, G:0.18, T:0.27
Consensus pattern (92 bp):
TGTCCCAGACATGTCTTACACTAGCACACATCTCATAGCCGATGCATGTCCCAGACATGTCTTAC
ACTGACACACATATCGAGGCCAATGCA
Found at i:97959101 original size:192 final size:192
Alignment explanation
Indices: 97958774--97959159 Score: 700
Period size: 192 Copynumber: 2.0 Consensus size: 192
97958764 TTCCCCAATC
* * *
97958774 AAGCAATTTATGCTATAATAATTTCAATAAAATTTAAATACATATATTATTAATGTAGTTTTACT
1 AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAATACATATATTATTAATATAGTTGTACT
97958839 ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
66 ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
97958904 CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAATGAACTTATTT
131 CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAATGAACTTATTT
*
97958966 AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAGTACATATATTATTAATATAGTTGTACT
1 AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAATACATATATTATTAATATAGTTGTACT
*
97959031 ATTTACATACAACTTACCTCGGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
66 ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
* **
97959096 CTTTCCCTCGGTCTAGTTCGGATTTGGTATTTCTTGATCTATAATAACAAATGAACTTATTT
131 CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAATGAACTTATTT
97959158 AA
1 AA
97959160 TCACTAAATA
Statistics
Matches: 186, Mismatches: 8, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
192 186 1.00
ACGTcount: A:0.33, C:0.15, G:0.13, T:0.39
Consensus pattern (192 bp):
AAGCAATTTATGCTATAAAAATTTCAATAAAATTTAAATACATATATTATTAATATAGTTGTACT
ATTTACATACAACTTACCTCAGATTACAAAATGTGGCGACTAGTCGATTTAGTCGATTTGCTTGG
CTTTCCCCCGGTCTAGTTCGGATTCAGTATTTCTTGATCTATAATAACAAATGAACTTATTT
Found at i:97960047 original size:141 final size:141
Alignment explanation
Indices: 97959793--97960074 Score: 564
Period size: 141 Copynumber: 2.0 Consensus size: 141
97959783 CTCATGGCCG
97959793 AGCAAGCTCTTTTAAAAGGGTCTAATTGCCCTTTAAAGACCCCCAAATTTTATTCTCTACCTATT
1 AGCAAGCTCTTTTAAAAGGGTCTAATTGCCCTTTAAAGACCCCCAAATTTTATTCTCTACCTATT
97959858 TGACACTTTTAGTTATCAAATTAGGACTTTTGCACTTTATGCGATTTAGTCTTTTTTCGCAATTA
66 TGACACTTTTAGTTATCAAATTAGGACTTTTGCACTTTATGCGATTTAGTCTTTTTTCGCAATTA
97959923 AGCTCACAAAC
131 AGCTCACAAAC
97959934 AGCAAGCTCTTTTAAAAGGGTCTAATTGCCCTTTAAAGACCCCCAAATTTTATTCTCTACCTATT
1 AGCAAGCTCTTTTAAAAGGGTCTAATTGCCCTTTAAAGACCCCCAAATTTTATTCTCTACCTATT
97959999 TGACACTTTTAGTTATCAAATTAGGACTTTTGCACTTTATGCGATTTAGTCTTTTTTCGCAATTA
66 TGACACTTTTAGTTATCAAATTAGGACTTTTGCACTTTATGCGATTTAGTCTTTTTTCGCAATTA
97960064 AGCTCACAAAC
131 AGCTCACAAAC
97960075 GCTAAAATTA
Statistics
Matches: 141, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
141 141 1.00
ACGTcount: A:0.28, C:0.21, G:0.12, T:0.38
Consensus pattern (141 bp):
AGCAAGCTCTTTTAAAAGGGTCTAATTGCCCTTTAAAGACCCCCAAATTTTATTCTCTACCTATT
TGACACTTTTAGTTATCAAATTAGGACTTTTGCACTTTATGCGATTTAGTCTTTTTTCGCAATTA
AGCTCACAAAC
Found at i:97962313 original size:58 final size:59
Alignment explanation
Indices: 97962217--97962338 Score: 228
Period size: 58 Copynumber: 2.1 Consensus size: 59
97962207 TATGATATTG
*
97962217 CTTTCGATATTCTTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
1 CTTTCGATATTATTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
97962276 CTTTC-ATATTATTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
1 CTTTCGATATTATTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
97962334 CTTTC
1 CTTTC
97962339 TTATGTTTTA
Statistics
Matches: 62, Mismatches: 1, Indels: 1
0.97 0.02 0.02
Matches are distributed among these distances:
58 57 0.92
59 5 0.08
ACGTcount: A:0.29, C:0.20, G:0.12, T:0.39
Consensus pattern (59 bp):
CTTTCGATATTATTCTTCAATACGAAGATGATTTGCTAAAGCCTTAAGAGACATTTCCT
Found at i:97975658 original size:26 final size:26
Alignment explanation
Indices: 97975629--97975738 Score: 184
Period size: 26 Copynumber: 4.2 Consensus size: 26
97975619 TGTTACAAAT
97975629 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
97975655 TGATAATAGGTTAGGTAAATGTTCCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
97975681 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
* *
97975707 TGATAATGGGTTAGGTAAATGTTTCA
1 TGATAATAGGTTAGGTAAATGTTCCA
97975733 TGATAA
1 TGATAA
97975739 GAATTTCATG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
26 82 1.00
ACGTcount: A:0.34, C:0.05, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATAGGTTAGGTAAATGTTCCA
Found at i:97986411 original size:14 final size:14
Alignment explanation
Indices: 97986392--97986419 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
97986382 ACCAGGTAAG
97986392 TTCGGATAACTTAA
1 TTCGGATAACTTAA
97986406 TTCGGATAACTTAA
1 TTCGGATAACTTAA
97986420 AGTAAACCCC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.36, C:0.14, G:0.14, T:0.36
Consensus pattern (14 bp):
TTCGGATAACTTAA
Found at i:97989713 original size:175 final size:175
Alignment explanation
Indices: 97989422--97989772 Score: 621
Period size: 175 Copynumber: 2.0 Consensus size: 175
97989412 ATCCTCTTTG
* * * *
97989422 CCCTTGTTGGTCATATATTCCAACAATTAAGTTTCCATGCACATATGCTTTCCACAGCATGTATT
1 CCCTTGTTAGTCATATATTCCAACAATCAAGTTTCCATGCACATATGCTTTCCACAACATATATT
97989487 CATTTAACATGTACAAATCATCTCTTTATATTACAAATATAATTTCATAATAGTTCATCTCGAGT
66 CATTTAACATGTACAAATCATCTCTTTATATTACAAATATAATTTCATAATAGTTCATCTCGAGT
*
97989552 TCAGATTATTTCATGTCAGAACTTTACTCATATCATTCGAAATAT
131 TCAGATTATTTCATGTCAAAACTTTACTCATATCATTCGAAATAT
*
97989597 CCCTTGTTAGTCATATATTCCAACAATCAAGTTTCCATGCATATATGCTTTCCACAACATATATT
1 CCCTTGTTAGTCATATATTCCAACAATCAAGTTTCCATGCACATATGCTTTCCACAACATATATT
* *
97989662 CATTTAACATGTATAAATCATCTCTTTATATTACAAGTATAATTTCATAATAGTTCATCTCGAGT
66 CATTTAACATGTACAAATCATCTCTTTATATTACAAATATAATTTCATAATAGTTCATCTCGAGT
*
97989727 TCAGATTATTTCATGTCAAAACTTTACTCGTATCATTCGAAATAT
131 TCAGATTATTTCATGTCAAAACTTTACTCATATCATTCGAAATAT
97989772 C
1 C
97989773 AAGGTCACAC
Statistics
Matches: 167, Mismatches: 9, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
175 167 1.00
ACGTcount: A:0.32, C:0.20, G:0.09, T:0.39
Consensus pattern (175 bp):
CCCTTGTTAGTCATATATTCCAACAATCAAGTTTCCATGCACATATGCTTTCCACAACATATATT
CATTTAACATGTACAAATCATCTCTTTATATTACAAATATAATTTCATAATAGTTCATCTCGAGT
TCAGATTATTTCATGTCAAAACTTTACTCATATCATTCGAAATAT
Found at i:97990221 original size:61 final size:61
Alignment explanation
Indices: 97990145--97990348 Score: 256
Period size: 61 Copynumber: 3.4 Consensus size: 61
97990135 TATATACAAC
* *
97990145 AGGATTACCAGTCCAGGCTAAATCATGTCTTCAATATATATATACTCAATAAAGCTTAGTT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
* * *
97990206 AGGATTACTAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAGAGCTTGGTT
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
* * * * * *
97990267 AGGATTACCAGTCCAAGTTAAATCCTGTCTCCACTCTATATATA-T---T-GAGCTTAGTC
1 AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
* *
97990323 AGGATTATCAATCCAGGCTAAATCCT
1 AGGATTACCAGTCCAGGCTAAATCCT
97990349 TTTTATGACA
Statistics
Matches: 127, Mismatches: 16, Indels: 5
0.86 0.11 0.03
Matches are distributed among these distances:
56 30 0.24
57 1 0.01
60 1 0.01
61 95 0.75
ACGTcount: A:0.32, C:0.21, G:0.15, T:0.32
Consensus pattern (61 bp):
AGGATTACCAGTCCAGGCTAAATCCTGTCTCCAATATATATATACTCAATAAAGCTTAGTT
Found at i:97991770 original size:23 final size:23
Alignment explanation
Indices: 97991740--97991790 Score: 102
Period size: 23 Copynumber: 2.2 Consensus size: 23
97991730 TTTACATAAA
97991740 CATCAAGTAAGAATAGGTGAGCT
1 CATCAAGTAAGAATAGGTGAGCT
97991763 CATCAAGTAAGAATAGGTGAGCT
1 CATCAAGTAAGAATAGGTGAGCT
97991786 CATCA
1 CATCA
97991791 TGCAATACTC
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22
Consensus pattern (23 bp):
CATCAAGTAAGAATAGGTGAGCT
Found at i:98001689 original size:21 final size:21
Alignment explanation
Indices: 98001665--98001716 Score: 86
Period size: 21 Copynumber: 2.5 Consensus size: 21
98001655 CAAAAGTATT
* *
98001665 AAATTGATCGCTAAAGGTGTC
1 AAATAGATAGCTAAAGGTGTC
98001686 AAATAGATAGCTAAAGGTGTC
1 AAATAGATAGCTAAAGGTGTC
98001707 AAATAGATAG
1 AAATAGATAG
98001717 AGAATAAGAA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.42, C:0.10, G:0.23, T:0.25
Consensus pattern (21 bp):
AAATAGATAGCTAAAGGTGTC
Found at i:98008446 original size:8 final size:9
Alignment explanation
Indices: 98008418--98008447 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
98008408 GATTAATTTA
98008418 CAAAGTTAT
1 CAAAGTTAT
98008427 CAAAGTTAT
1 CAAAGTTAT
98008436 CAAAG-TAT
1 CAAAGTTAT
98008444 CAAA
1 CAAA
98008448 ATTTTTCCAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
8 7 0.33
9 14 0.67
ACGTcount: A:0.50, C:0.13, G:0.10, T:0.27
Consensus pattern (9 bp):
CAAAGTTAT
Found at i:98011531 original size:20 final size:20
Alignment explanation
Indices: 98011508--98011568 Score: 52
Period size: 20 Copynumber: 3.0 Consensus size: 20
98011498 CAGTTTATCT
98011508 ACATTACTGGTGACTTGTCC
1 ACATTACTGGTGACTTGTCC
* * * * *
98011528 ACATTTCTAGT-ATTTTATCT
1 ACATTACTGGTGA-CTTGTCC
*
98011548 ACATTACTGGTGGCTTGTCC
1 ACATTACTGGTGACTTGTCC
98011568 A
1 A
98011569 TAAATTGGTT
Statistics
Matches: 28, Mismatches: 11, Indels: 4
0.65 0.26 0.09
Matches are distributed among these distances:
19 1 0.04
20 27 0.96
ACGTcount: A:0.21, C:0.21, G:0.16, T:0.41
Consensus pattern (20 bp):
ACATTACTGGTGACTTGTCC
Found at i:98013404 original size:13 final size:13
Alignment explanation
Indices: 98013386--98013415 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
98013376 TAAATTCATG
98013386 CAACATGCCAACC
1 CAACATGCCAACC
98013399 CAACATGCCAACC
1 CAACATGCCAACC
98013412 CAAC
1 CAAC
98013416 TCACCTCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.40, C:0.47, G:0.07, T:0.07
Consensus pattern (13 bp):
CAACATGCCAACC
Found at i:98022837 original size:39 final size:39
Alignment explanation
Indices: 98022775--98022875 Score: 139
Period size: 39 Copynumber: 2.6 Consensus size: 39
98022765 ATCGTGATTT
* * * *
98022775 GAAGCCCGAAGTCTAGCTGAAGCACATAAGTGCTAAATG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
* *
98022814 GAAGCCCGAAGGCTAACTAAAGCACACAAGTGTTAAACG
1 GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
*
98022853 GAAGCCCAAAGGCTAACTGAAGC
1 GAAGCCCGAAGGCTAACTGAAGC
98022876 TCATCAGAGC
Statistics
Matches: 54, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 54 1.00
ACGTcount: A:0.39, C:0.23, G:0.25, T:0.14
Consensus pattern (39 bp):
GAAGCCCGAAGGCTAACTGAAGCACACAAGTGCTAAACG
Found at i:98025451 original size:275 final size:275
Alignment explanation
Indices: 98024954--98025503 Score: 1064
Period size: 275 Copynumber: 2.0 Consensus size: 275
98024944 TGGTTGTTTG
*
98024954 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTTTATGAAGGAATATGG
1 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
98025019 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
66 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
98025084 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
131 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
98025149 AGTTATCAACCAACCAAGAACTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
196 AGTTATCAACCAACCAAGAACTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
98025214 AGTCGAAGAATTCTA
261 AGTCGAAGAATTCTA
*
98025229 GACTGATTTCAAAATACAATGTTACTGGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
1 GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
98025294 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
66 TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
*
98025359 GAGGTTTGTGATCTACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
131 GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
*
98025424 AGTTATCAACCAACCAAGAATTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
196 AGTTATCAACCAACCAAGAACTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
98025489 AGTCGAAGAATTCTA
261 AGTCGAAGAATTCTA
98025504 CAACACCGTT
Statistics
Matches: 271, Mismatches: 4, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
275 271 1.00
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.30
Consensus pattern (275 bp):
GACTGATTTCAAAATACAATGTTACTAGTGTTCTAATAATTATTGGGTTCTATGAAGGAATATGG
TAGGAGTAGCATCCGCCAACTAATATTTGTAAAGAATTTGTGTAATGGGATTTGAAATATGGTGT
GAGGTTTGTGATCCACCAATCGAGTGAAATGAGTATAAGACGGTTAAGTGTAAAGATTAATGTAT
AGTTATCAACCAACCAAGAACTAGAAAAGTATTCGCCAAGGTCTAAGAAGGAGTCCAACCCTTTG
AGTCGAAGAATTCTA
Found at i:98028189 original size:30 final size:30
Alignment explanation
Indices: 98028131--98028189 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
98028121 ATTTTCGAGC
* **
98028131 CTAGGGGTAAAACGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAACGGTCATTTTACCAAAGT
*
98028161 CTAGGGGCAAAATGGTCATTTTACCAAAG
1 CTAGGGGCAAAACGGTCATTTTACCAAAG
98028190 AAGTGAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAACGGTCATTTTACCAAAGT
Found at i:98028744 original size:94 final size:90
Alignment explanation
Indices: 98028529--98028839 Score: 290
Period size: 94 Copynumber: 3.3 Consensus size: 90
98028519 ATTGTGAGCT
* * *
98028529 AGTGTAAGACATGTCTGGAACATGCATCGGCCAC-ATTATGAGAGCCAGTGTAAGACCATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCACGA-GACGA-AGCCAGTGTAAGA-CATGTCTG
* * *
98028593 GGACATGGCATCCG-TATCGAGA-CAAATGC
63 GGACAT-GCATCGGCTA-CGAGATGAAGT-C
*
98028622 TAGTGTAAGACATGTCTAGGACATGCATCGGCCACGAGACGTAAGCCAGTGTAAGACATGTCTGG
1 -AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACG-AAGCCAGTGTAAGACATGTCTGG
98028687 GACATGCATCGGCTACGAGATGATAGTC
64 GACATGCATCGGCTACGAGATGA-AGTC
* * * * *
98028715 AGTGTAAGACCATGTCTGGGACATGGCATCCG-TATCGAGACAAATGCTAGTGTAAGACATGTCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCA-CGAGACGAA-GCCAGTGTAAGACATGTCT
* * * *
98028779 GGAACATGCATCGGCCAC-ATTATGAGAGCC
62 GGGACATGCATCGGCTACGA-GATGA-AGTC
98028809 AGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCG
98028840 ACAACTTACC
Statistics
Matches: 188, Mismatches: 19, Indels: 20
0.83 0.08 0.09
Matches are distributed among these distances:
92 20 0.11
93 35 0.19
94 131 0.70
95 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.22
Consensus pattern (90 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCACGAGACGAAGCCAGTGTAAGACATGTCTGGGA
CATGCATCGGCTACGAGATGAAGTC
Found at i:98028786 original size:140 final size:140
Alignment explanation
Indices: 98028524--98028839 Score: 478
Period size: 140 Copynumber: 2.2 Consensus size: 140
98028514 GGGTTATTGT
* * *
98028524 GAGCTAGTGTAAGACATGTCTGGAACATGCATCGGCCACATTATGAGAGCCAGTGTAAGACCATG
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
98028589 TCTGGGACATGGCATCCGTATCGAGACAAATGCTAGTGTAAGACATGTCTAGGACATGCATCGGC
66 TCTGGGACATGGCATCCGTATCGAGACAAATGCTAGTGTAAGACATGTCTAGGACATGCATCGGC
98028654 CACGA-GACGTA
131 CAC-ATGACG-A
* * *
98028665 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACGA-GATGATAGTCAGTGTAAGACCAT
1 GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCAC-ATGATGAGAGCCAGTGTAAGACCAT
98028728 GTCTGGGACATGGCATCCGTATCGAGACAAATGCTAGTGTAAGACATGTC-AGGAACATGCATCG
65 GTCTGGGACATGGCATCCGTATCGAGACAAATGCTAGTGTAAGACATGTCTAGG-ACATGCATCG
* *
98028792 GCCACATTATGA
129 GCCACATGACGA
98028804 GAGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 GAGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCG
98028840 ACAACTTACC
Statistics
Matches: 161, Mismatches: 8, Indels: 11
0.89 0.04 0.06
Matches are distributed among these distances:
139 5 0.03
140 135 0.84
141 15 0.09
142 6 0.04
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (140 bp):
GAGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATGATGAGAGCCAGTGTAAGACCATG
TCTGGGACATGGCATCCGTATCGAGACAAATGCTAGTGTAAGACATGTCTAGGACATGCATCGGC
CACATGACGA
Found at i:98034161 original size:259 final size:259
Alignment explanation
Indices: 98033702--98034219 Score: 1036
Period size: 259 Copynumber: 2.0 Consensus size: 259
98033692 ACCTAAAGGG
98033702 GTCATTTTGCATAAGTTGTAAAATATATGAAAAATGTGTGAAATAGTAGGATTTTGGACTTTCTA
1 GTCATTTTGCATAAGTTGTAAAATATATGAAAAATGTGTGAAATAGTAGGATTTTGGACTTTCTA
98033767 TAAGAGTAAAAAGGGTTCAGATAGGCTTAAGATGCAAAGAAATTCGATAAAAATCAATTTTTGAG
66 TAAGAGTAAAAAGGGTTCAGATAGGCTTAAGATGCAAAGAAATTCGATAAAAATCAATTTTTGAG
98033832 CCTAGGGGTAAAATGGTTATTTTGTCAAAGTCTAGGGGCAAAATGGTCATTTTACCAAAAAAGTG
131 CCTAGGGGTAAAATGGTTATTTTGTCAAAGTCTAGGGGCAAAATGGTCATTTTACCAAAAAAGTG
98033897 AATTTTCAATTGCCTAATTTTATTTAGTGATTAAATAAGTGTATTTTTCTATTATAGATCAAGA
196 AATTTTCAATTGCCTAATTTTATTTAGTGATTAAATAAGTGTATTTTTCTATTATAGATCAAGA
98033961 GTCATTTTGCATAAGTTGTAAAATATATGAAAAATGTGTGAAATAGTAGGATTTTGGACTTTCTA
1 GTCATTTTGCATAAGTTGTAAAATATATGAAAAATGTGTGAAATAGTAGGATTTTGGACTTTCTA
98034026 TAAGAGTAAAAAGGGTTCAGATAGGCTTAAGATGCAAAGAAATTCGATAAAAATCAATTTTTGAG
66 TAAGAGTAAAAAGGGTTCAGATAGGCTTAAGATGCAAAGAAATTCGATAAAAATCAATTTTTGAG
98034091 CCTAGGGGTAAAATGGTTATTTTGTCAAAGTCTAGGGGCAAAATGGTCATTTTACCAAAAAAGTG
131 CCTAGGGGTAAAATGGTTATTTTGTCAAAGTCTAGGGGCAAAATGGTCATTTTACCAAAAAAGTG
98034156 AATTTTCAATTGCCTAATTTTATTTAGTGATTAAATAAGTGTATTTTTCTATTATAGATCAAGA
196 AATTTTCAATTGCCTAATTTTATTTAGTGATTAAATAAGTGTATTTTTCTATTATAGATCAAGA
98034220 AATATCGAAT
Statistics
Matches: 259, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
259 259 1.00
ACGTcount: A:0.37, C:0.08, G:0.19, T:0.35
Consensus pattern (259 bp):
GTCATTTTGCATAAGTTGTAAAATATATGAAAAATGTGTGAAATAGTAGGATTTTGGACTTTCTA
TAAGAGTAAAAAGGGTTCAGATAGGCTTAAGATGCAAAGAAATTCGATAAAAATCAATTTTTGAG
CCTAGGGGTAAAATGGTTATTTTGTCAAAGTCTAGGGGCAAAATGGTCATTTTACCAAAAAAGTG
AATTTTCAATTGCCTAATTTTATTTAGTGATTAAATAAGTGTATTTTTCTATTATAGATCAAGA
Found at i:98034556 original size:47 final size:46
Alignment explanation
Indices: 98034486--98034708 Score: 220
Period size: 47 Copynumber: 4.8 Consensus size: 46
98034476 AGTTATTGTG
*
98034486 AGCTAGTGTAAGACATGTCTGGGACATGGCATCCACTTCGAGACGA
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACGA
* * *
98034532 GTGCTAGTGTAAGACATGTCTGGGACAT-GCATAGACCTCGAGACGTA
1 -AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACG-A
* * * * * *
98034579 AGCCAGTATAAGACATGTTTGGGACAT-GCATCGGCTACGAGATGA
1 AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACGA
* * * *
98034624 TAGTTAGTGTAAGACCATGTCTGGGACATGGTATCGAATT-GAGA-TA
1 -AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGACTTCGAGACGA
*
98034670 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 --AGCTAGTGTAAGA-CATGTCTGGGACATGGCATCGAC
98034709 ACTTTACCCC
Statistics
Matches: 144, Mismatches: 27, Indels: 10
0.80 0.15 0.06
Matches are distributed among these distances:
45 1 0.01
46 60 0.42
47 77 0.53
48 6 0.04
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.24
Consensus pattern (46 bp):
AGCTAGTGTAAGACATGTCTGGGACATGGCATCGACTTCGAGACGA
Found at i:98034591 original size:46 final size:46
Alignment explanation
Indices: 98034485--98034653 Score: 144
Period size: 46 Copynumber: 3.6 Consensus size: 46
98034475 TAGTTATTGT
* * * *
98034485 GAGCTAGTGTAAGACATGTCTGGGACATGGCATCCACTTCGAGACGA
1 GAGCCAGTATAAGACATGTCTGGGACAT-GCATACACCTCGAGACGA
* * * *
98034532 GTGCTAGTGTAAGACATGTCTGGGACATGCATAGACCTCGAGACGTA
1 GAGCCAGTATAAGACATGTCTGGGACATGCATACACCTCGAGACG-A
* ** *
98034579 -AGCCAGTATAAGACATGTTTGGGACATGCAT-CGGCTACGAGATGA
1 GAGCCAGTATAAGACATGTCTGGGACATGCATACACCT-CGAGACGA
* ** *
98034624 TAGTTAGTGTAAGACCATGTCTGGGACATG
1 GAGCCAGTATAAGA-CATGTCTGGGACATG
98034654 GTATCGAATT
Statistics
Matches: 102, Mismatches: 16, Indels: 8
0.81 0.13 0.06
Matches are distributed among these distances:
45 3 0.03
46 57 0.56
47 42 0.41
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.24
Consensus pattern (46 bp):
GAGCCAGTATAAGACATGTCTGGGACATGCATACACCTCGAGACGA
Found at i:98034676 original size:93 final size:93
Alignment explanation
Indices: 98034484--98034708 Score: 258
Period size: 93 Copynumber: 2.4 Consensus size: 93
98034474 TTAGTTATTG
* * *
98034484 TGAGCTAGTGTAAGACATGTCTGGGACATGGCATCCACTTCGAGACGAGTGCTAGTGTAAGACAT
1 TGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACGAGTGCTAGTGTAAGACAT
* *
98034549 GTCTGGGACATGCATAGACCTCGAGACG
66 GTCTGGGACATGCATAGACATCGAGACA
* * * * * *
98034577 TAAGCCAGTATAAGACATGTTTGGGACAT-GCATCGGCTACGAGATGA-TAGTTAGTGTAAGACC
1 TGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACGAGT-GCTAGTGTAAGA-C
* * * *
98034640 ATGTCTGGGACATGGTATCGA-ATTGAGATA
64 ATGTCTGGGACAT-GCATAGACATCGAGACA
98034670 TGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC
1 TGAGCCAGTGTAAGA-CATGTCTGGGACATGGCATCGAC
98034709 ACTTTACCCC
Statistics
Matches: 108, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
91 1 0.01
92 25 0.23
93 57 0.53
94 18 0.17
95 7 0.06
ACGTcount: A:0.28, C:0.18, G:0.29, T:0.24
Consensus pattern (93 bp):
TGAGCCAGTGTAAGACATGTCTGGGACATGGCATCGACTACGAGACGAGTGCTAGTGTAAGACAT
GTCTGGGACATGCATAGACATCGAGACA
Found at i:98040645 original size:38 final size:39
Alignment explanation
Indices: 98040575--98040669 Score: 138
Period size: 38 Copynumber: 2.5 Consensus size: 39
98040565 ACAAATGATT
* *
98040575 TTAAAATTATTAAAATAATTTTTTTAAAATATAAAATTA
1 TTAAAATTATTATATTAATTTTTTTAAAATATAAAATTA
* *
98040614 TTAAAATGATTATATTAA-TTTTTTGAAATATAAAATTA
1 TTAAAATTATTATATTAATTTTTTTAAAATATAAAATTA
*
98040652 TTAAAATTATTGTATTAA
1 TTAAAATTATTATATTAA
98040670 ATTCTATTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 1
0.88 0.11 0.02
Matches are distributed among these distances:
38 35 0.70
39 15 0.30
ACGTcount: A:0.49, C:0.00, G:0.03, T:0.47
Consensus pattern (39 bp):
TTAAAATTATTATATTAATTTTTTTAAAATATAAAATTA
Found at i:98041071 original size:15 final size:15
Alignment explanation
Indices: 98041038--98041071 Score: 50
Period size: 15 Copynumber: 2.3 Consensus size: 15
98041028 GTCATAGATG
*
98041038 CTCTTCAAGCCTCAT
1 CTCTTCAAGCCTCAC
*
98041053 CTCTTCAAGCTTCAC
1 CTCTTCAAGCCTCAC
98041068 CTCT
1 CTCT
98041072 AAAACCTCTC
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (15 bp):
CTCTTCAAGCCTCAC
Found at i:98041628 original size:14 final size:15
Alignment explanation
Indices: 98041604--98041645 Score: 50
Period size: 14 Copynumber: 2.8 Consensus size: 15
98041594 AAACGTTAAA
98041604 AATATATTTTAATAT
1 AATATATTTTAATAT
98041619 AATA-ATTTTAATAAT
1 AATATATTTTAAT-AT
**
98041634 TTTATATTTTAA
1 AATATATTTTAA
98041646 AAAATAGTTT
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
14 8 0.35
15 8 0.35
16 7 0.30
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (15 bp):
AATATATTTTAATAT
Found at i:98041658 original size:29 final size:30
Alignment explanation
Indices: 98041606--98041668 Score: 101
Period size: 29 Copynumber: 2.1 Consensus size: 30
98041596 ACGTTAAAAA
*
98041606 TATATTTTAATATAATAATTTTAATAATTT
1 TATATTTTAATAAAATAATTTTAATAATTT
*
98041636 TATATTTTAA-AAAATAGTTTTAATAATTT
1 TATATTTTAATAAAATAATTTTAATAATTT
98041665 TATA
1 TATA
98041669 ATCATTTACT
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
29 21 0.68
30 10 0.32
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (30 bp):
TATATTTTAATAAAATAATTTTAATAATTT
Found at i:98044776 original size:33 final size:33
Alignment explanation
Indices: 98044734--98044799 Score: 132
Period size: 33 Copynumber: 2.0 Consensus size: 33
98044724 AAGGGACACG
98044734 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
1 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
98044767 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
1 GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
98044800 ACTTCTTATT
Statistics
Matches: 33, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.12, C:0.21, G:0.18, T:0.48
Consensus pattern (33 bp):
GCCGTGAGTACCCCTGTTTTTAGTTTTTTCTTA
Found at i:98046358 original size:43 final size:43
Alignment explanation
Indices: 98046296--98046536 Score: 196
Period size: 43 Copynumber: 5.6 Consensus size: 43
98046286 TAAGTGACTT
* * *
98046296 TTCGGTTTATCCGACGATGCATTGTGTGTGCCAGTATACTTAC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* * ** *
98046339 TTCGGTTTATCCGATGATGCGTTGTGTGTGATAGTATAGTTGC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* * * * * *
98046382 TTCAGCTTATCCAATGATACATTGTGTGTGCCGGTAAACTTAC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* * * * *
98046425 TTCGATTTATCTAATGATGCATTGTGGGTGTTCA-TATAGTTTC
1 TTCGGTTTATCCAATGATGCATTGTGTGTG-CCAGTATAGTTAC
* * * * * ** * *
98046468 TTTGGTATATTCGATTATGCACCGTGTGTGCCAATATAGTTGC
1 TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
* *
98046511 TTCGGTATATCTAATGATGCATTGTG
1 TTCGGTTTATCCAATGATGCATTGTG
98046537 AGTGTAACAC
Statistics
Matches: 149, Mismatches: 47, Indels: 4
0.75 0.23 0.02
Matches are distributed among these distances:
42 2 0.01
43 146 0.98
44 1 0.01
ACGTcount: A:0.21, C:0.16, G:0.23, T:0.40
Consensus pattern (43 bp):
TTCGGTTTATCCAATGATGCATTGTGTGTGCCAGTATAGTTAC
Found at i:98047165 original size:13 final size:13
Alignment explanation
Indices: 98047147--98047171 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98047137 ATGTCCATTT
98047147 CAGATACAGATAA
1 CAGATACAGATAA
98047160 CAGATACAGATA
1 CAGATACAGATA
98047172 TGCAGATCAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.52, C:0.16, G:0.16, T:0.16
Consensus pattern (13 bp):
CAGATACAGATAA
Found at i:98047795 original size:84 final size:84
Alignment explanation
Indices: 98047654--98047812 Score: 210
Period size: 84 Copynumber: 1.9 Consensus size: 84
98047644 AATGCCCATG
* * * * *
98047654 TGGGCCCACACGCCTAGGTTGGCCTTGCCTGTGTGGCCCACACGACCTGGCCCAAAATCTACACA
1 TGGGCCCACACGCCCAGATTGGCCTTGCCCGTGTGGCCCACACGACCTAGCCCAAAATCCACACA
*
98047719 CTCGTGTGGCATGGCTATT
66 CCCGTGTGGCATGGCTATT
* * * * **
98047738 TGGGCCCATACGCCCATATTGGTCTTGCCCGTGTGGCCCATACGGTCTAGCCCAAAATCCACACA
1 TGGGCCCACACGCCCAGATTGGCCTTGCCCGTGTGGCCCACACGACCTAGCCCAAAATCCACACA
98047803 CCCGTGTGGC
66 CCCGTGTGGC
98047813 CCACACACCT
Statistics
Matches: 63, Mismatches: 12, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
84 63 1.00
ACGTcount: A:0.18, C:0.35, G:0.25, T:0.22
Consensus pattern (84 bp):
TGGGCCCACACGCCCAGATTGGCCTTGCCCGTGTGGCCCACACGACCTAGCCCAAAATCCACACA
CCCGTGTGGCATGGCTATT
Found at i:98050982 original size:2 final size:2
Alignment explanation
Indices: 98050977--98051046 Score: 140
Period size: 2 Copynumber: 35.0 Consensus size: 2
98050967 TATCTATATA
98050977 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG TG
98051019 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
1 TG TG TG TG TG TG TG TG TG TG TG TG TG TG
98051047 AGTAAGTGAT
Statistics
Matches: 68, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 68 1.00
ACGTcount: A:0.00, C:0.00, G:0.50, T:0.50
Consensus pattern (2 bp):
TG
Found at i:98051540 original size:29 final size:29
Alignment explanation
Indices: 98051507--98051564 Score: 89
Period size: 29 Copynumber: 2.0 Consensus size: 29
98051497 TCGTATGCCT
*
98051507 TACACAGCTTAAGACACGACCGTGTGGCC
1 TACACAGCTTAAGACACGACCGTGAGGCC
* *
98051536 TACACGGCTTAAGACAGGACCGTGAGGCC
1 TACACAGCTTAAGACACGACCGTGAGGCC
98051565 AGTAGTTTTG
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
29 26 1.00
ACGTcount: A:0.28, C:0.29, G:0.28, T:0.16
Consensus pattern (29 bp):
TACACAGCTTAAGACACGACCGTGAGGCC
Found at i:98055885 original size:95 final size:95
Alignment explanation
Indices: 98055716--98056000 Score: 525
Period size: 95 Copynumber: 3.0 Consensus size: 95
98055706 TTGAGTATCG
*
98055716 GTTACGTATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
1 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
*
98055781 TTTTGCCATAGTCAAATTAGATGTTACGAT
66 TTTTGCCATAGTCAAATTAGATGTTACCAT
* *
98055811 GTTAGATATAGGAGTGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
1 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
98055876 TTTTGCCATAGTCAAATTAGATGTTACCAT
66 TTTTGCCATAGTCAAATTAGATGTTACCAT
98055906 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
1 GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
*
98055971 TTTTACCATAGTCAAATTAGATGTTACCAT
66 TTTTGCCATAGTCAAATTAGATGTTACCAT
98056001 ATTAATTTGA
Statistics
Matches: 183, Mismatches: 7, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 183 1.00
ACGTcount: A:0.36, C:0.12, G:0.18, T:0.34
Consensus pattern (95 bp):
GTTACATATAGGAATGTCAAATTTGATGCCAAAGTAATCATGGCTAGAACTATTAAATGGATATA
TTTTGCCATAGTCAAATTAGATGTTACCAT
Found at i:98065073 original size:22 final size:21
Alignment explanation
Indices: 98065033--98065074 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
98065023 CTTCCTTTTG
*
98065033 TCTCTTTTTATTCTCTTCTTT
1 TCTCTTTTTATTCTATTCTTT
*
98065054 TCTCTTTTTCTCTCTATTCTT
1 TCTCTTTTTAT-TCTATTCTT
98065075 GGAAATCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 10 0.56
22 8 0.44
ACGTcount: A:0.05, C:0.26, G:0.00, T:0.69
Consensus pattern (21 bp):
TCTCTTTTTATTCTATTCTTT
Found at i:98070009 original size:25 final size:25
Alignment explanation
Indices: 98069975--98070022 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
98069965 AGTAGGTACG
*
98069975 TGATGTGTAACAGTTTACCACCACA
1 TGATGTGTAACAATTTACCACCACA
*
98070000 TGATGTGTAACAATTTGCCACCA
1 TGATGTGTAACAATTTACCACCA
98070023 GGTATATGCC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.31, C:0.23, G:0.17, T:0.29
Consensus pattern (25 bp):
TGATGTGTAACAATTTACCACCACA
Found at i:98085879 original size:21 final size:21
Alignment explanation
Indices: 98085853--98085896 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
98085843 ACTAAATTAT
*
98085853 CATAATTAAAAAATCCTAATC
1 CATAATTAAAAAAACCTAATC
98085874 CATAATTAAAAAAACCTAATC
1 CATAATTAAAAAAACCTAATC
98085895 CA
1 CA
98085897 ACCAAACTCA
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.55, C:0.20, G:0.00, T:0.25
Consensus pattern (21 bp):
CATAATTAAAAAAACCTAATC
Found at i:98089501 original size:74 final size:74
Alignment explanation
Indices: 98089398--98089561 Score: 195
Period size: 74 Copynumber: 2.2 Consensus size: 74
98089388 AATAATACAA
** * ** *
98089398 AAAAACCCCTAAAATTA-ATAACTTAAATGGTAAAAACGTCACTACATAAATACAAACTTAAATA
1 AAAAACCCCTAAAATTATA-AACTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATA
98089462 TTTAAATTGC
65 TTTAAATTGC
* * * * * * *
98089472 AAAAACTCTTAAAATTATAAACTGGAATGGCAAAAAAATTATTACATAAACACAAAGTTGACTAT
1 AAAAACCCCTAAAATTATAAACTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATAT
98089537 TTAAATTGC
66 TTAAATTGC
98089546 AAAAACCCCTAAAATT
1 AAAAACCCCTAAAATT
98089562 GATGGTTTGA
Statistics
Matches: 74, Mismatches: 15, Indels: 2
0.81 0.16 0.02
Matches are distributed among these distances:
74 73 0.99
75 1 0.01
ACGTcount: A:0.51, C:0.15, G:0.07, T:0.27
Consensus pattern (74 bp):
AAAAACCCCTAAAATTATAAACTGGAATGGCAAAAAAATCACTACATAAACACAAACTTAAATAT
TTAAATTGC
Found at i:98089769 original size:33 final size:33
Alignment explanation
Indices: 98089740--98089811 Score: 108
Period size: 33 Copynumber: 2.2 Consensus size: 33
98089730 TAGAGTATTG
*
98089740 CGGTGGATACAGGCCGAAAGGAGTGGAGTACTA
1 CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
* *
98089773 CGGTGGATATAAGCCGAAATGAGTGGAGTACTA
1 CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
*
98089806 AGGTGG
1 CGGTGG
98089812 TAGTGGGTTG
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.31, C:0.12, G:0.39, T:0.18
Consensus pattern (33 bp):
CGGTGGATACAAGCCGAAAGGAGTGGAGTACTA
Found at i:98091940 original size:103 final size:102
Alignment explanation
Indices: 98091832--98092159 Score: 421
Period size: 103 Copynumber: 3.3 Consensus size: 102
98091822 TACATTATAA
* * *
98091832 AAAATTTACATTAATAACAAATCACAAAACAATAAACTAAACAGTAACAATTTATAACCTAATCA
1 AAAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
98091897 TAAATTACTAACAAAATAACTATAAAATTATTTTTTT
66 TAAATTACTAACAAAATAACTATAAAATTATTTTTTT
* *
98091934 AAAAATTTTATATTACTAAAAAATCACAAAAC-----ACT--A-A-T---AATTTATAATCTAAT
1 -AAAA-TTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAAT
98091987 CATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
64 CATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
* * *
98092026 TAAATTTACATTACTAAAAAAATCACAAAACATTAAACTAAATACTAACAATTTATAACCTAATC
1 AAAATTTACATTACT-AAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATC
*
98092091 ATAAATTACTAACAAAATAACCATAAAATTATTTTTTT
65 ATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
* * *
98092129 TAAA-TTCCATTACTAAAAAAATTACAAAACA
1 AAAATTTACATTACT-AAAAAATCACAAAACA
98092160 CTAACAATTT
Statistics
Matches: 201, Mismatches: 10, Indels: 29
0.84 0.04 0.12
Matches are distributed among these distances:
90 10 0.05
91 18 0.09
92 53 0.26
95 1 0.00
96 4 0.02
97 1 0.00
98 1 0.00
99 4 0.02
100 1 0.00
102 25 0.12
103 60 0.30
104 23 0.11
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.33
Consensus pattern (102 bp):
AAAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
TAAATTACTAACAAAATAACTATAAAATTATTTTTTT
Found at i:98091986 original size:92 final size:90
Alignment explanation
Indices: 98091870--98092246 Score: 457
Period size: 92 Copynumber: 4.1 Consensus size: 90
98091860 ACAATAAACT
*
98091870 AAACAGTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTA
1 AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTT-
* *
98091935 AAAATTTTATATTACT-AAAAAATCACA
65 TAAA--TTACATTACTAAAAAAATCACA
* *
98091962 AAACACTAATAATTTATAATCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
1 AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
98092027 AAATTTACATTACTAAAAAAATCACAAAACA
66 AAA-TTACATTACTAAAAAAAT--C---ACA
*
98092058 TTAAACTAAATACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACCATAAAATTAT
1 --AAAC-----ACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTAT
* *
98092123 TTTTTTTAAATTCCATTACTAAAAAAATTACA
59 TTTTTTTAAATTACATTACTAAAAAAATCACA
98092155 AAACACTAACAATTTATAACCTAAAT-ATAAATTACTAACAAAATAACTAT---A--A-TTTTTT
1 AAACACTAACAATTTATAACCT-AATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTT
*
98092213 TAAATTATATTACT-AAAAAATCACA
65 TAAATTACATTACTAAAAAAATCACA
98092238 AAACACTAA
1 AAACACTAA
98092247 ACTAAACACT
Statistics
Matches: 257, Mismatches: 14, Indels: 37
0.83 0.05 0.12
Matches are distributed among these distances:
83 19 0.07
84 18 0.07
85 1 0.00
87 1 0.00
90 51 0.20
91 13 0.05
92 61 0.24
93 1 0.00
95 4 0.02
96 3 0.01
97 3 0.01
98 4 0.02
102 17 0.07
103 61 0.24
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (90 bp):
AAACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
AAATTACATTACTAAAAAAATCACA
Found at i:98092042 original size:43 final size:43
Alignment explanation
Indices: 98091897--98092048 Score: 119
Period size: 47 Copynumber: 3.4 Consensus size: 43
98091887 AACCTAATCA
*
98091897 TAAATTACTAACAAAATAACTATAAAATTATTTTTTTAAAAATTT
1 TAAATTACTAACAAAATAACTATAAAATTATTTTTTT-TAAA-TT
* * * * * * * *
98091942 TATATTACTAA-AAAATCACAAAACACTAATAATTTATAATCT-AATCA
1 TAAATTACTAACAAAATAACTATA-A--AATTATTT-T-TTTTAAAT-T
98091989 TAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAATT
1 TAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAATT
* *
98092032 TACATTACTAAAAAAAT
1 TAAATTACTAACAAAAT
98092049 CACAAAACAT
Statistics
Matches: 80, Mismatches: 19, Indels: 18
0.68 0.16 0.15
Matches are distributed among these distances:
43 17 0.21
44 13 0.16
45 18 0.22
46 1 0.01
47 20 0.25
48 10 0.12
49 1 0.01
ACGTcount: A:0.52, C:0.10, G:0.00, T:0.38
Consensus pattern (43 bp):
TAAATTACTAACAAAATAACTATAAAATTATTTTTTTTAAATT
Found at i:98092271 original size:95 final size:93
Alignment explanation
Indices: 98092155--98092388 Score: 296
Period size: 95 Copynumber: 2.5 Consensus size: 93
98092145 AAAAATTACA
*****
98092155 AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAACTATAATTTTTTTAA-ATT
1 AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAA-T-TAA-AAAAATAATATT
* *
98092219 ATATTACTAAAAAATCACAAAACACTAAACT
63 ACATTAATAAAAAATCACAAAACACTAAACT
* * *
98092250 AAACACTAACAATTTGTAACCTAATTATAAATTACTAACAAAATAATTAAAAAAATAATTTTACA
1 AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAATTAAAAAAATAATATTACA
98092315 TTAATAAAAAATCACAAAACACTAAACT
66 TTAATAAAAAATCACAAAACACTAAACT
* *
98092343 AAACAC-AACAATTTATAACAT-AATCCTAAATTACTAA-AAAATAATT
1 AAACACTAACAATTTATAACCTAAAT-ATAAATTACTAACAAAATAATT
98092389 TTAAAATAAT
Statistics
Matches: 123, Mismatches: 14, Indels: 8
0.85 0.10 0.06
Matches are distributed among these distances:
91 11 0.09
92 27 0.22
93 40 0.33
94 1 0.01
95 44 0.36
ACGTcount: A:0.56, C:0.15, G:0.00, T:0.29
Consensus pattern (93 bp):
AAACACTAACAATTTATAACCTAAATATAAATTACTAACAAAATAATTAAAAAAATAATATTACA
TTAATAAAAAATCACAAAACACTAAACT
Found at i:98092284 original size:185 final size:190
Alignment explanation
Indices: 98091833--98092295 Score: 670
Period size: 195 Copynumber: 2.4 Consensus size: 190
98091823 ACATTATAAA
* * *
98091833 AAATTTACATTAATAACAAATCACAAAACAATAAACTAAACAGTAACAATTTATAACCTAATCAT
1 AAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCAT
* *
98091898 AAATTACTAACAAAATAACTATAAAATTATTTTTTTAAAAATTTTATATTACTAAAAAATCACAA
66 AAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAAA-TTTACATTACTAAAAAATCACAA
* *
98091963 AACACTAATAATTTATAATCTAATCATAAATTACTAACAAAATAACTATAAAATTATTTTTTTT
130 AACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTAT--AA-TATTTTTTTT
* *
98092027 AAATTTACATTACTAAAAAAATCACAAAACATTAAACTAAATACTAACAATTTATAACCTAATCA
1 AAATTTACATTACT-AAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCA
* * *
98092092 TAAATTACTAACAAAATAACCATAAAATTATTTTTTT-TAAA-TTCCATTACTAAAAAAATTACA
65 TAAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAAATTTACATTACT-AAAAAATCACA
98092155 AAACACTAACAATTTATAACCTAAAT-ATAAATTACTAACAAAATAACTAT-A-A-TTTTTTT
129 AAACACTAACAATTTATAACCT-AATCATAAATTACTAACAAAATAACTATAATATTTTTTTT
* * * *
98092214 AAA-TTATATTACTAAAAAATCACAAAACACTAAACTAAACACTAACAATTTGTAACCTAATTAT
1 AAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCAT
98092278 AAATTACTAACAAAATAA
66 AAATTACTAACAAAATAA
98092296 TTAAAAAAAT
Statistics
Matches: 249, Mismatches: 17, Indels: 15
0.89 0.06 0.05
Matches are distributed among these distances:
185 65 0.26
186 9 0.04
187 10 0.04
188 1 0.00
190 1 0.00
192 8 0.03
193 54 0.22
194 19 0.08
195 82 0.33
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.33
Consensus pattern (190 bp):
AAATTTACATTACTAAAAAATCACAAAACAATAAACTAAACACTAACAATTTATAACCTAATCAT
AAATTACTAACAAAATAACCATAAAATTATTTTTTTAAAAATTTACATTACTAAAAAATCACAAA
ACACTAACAATTTATAACCTAATCATAAATTACTAACAAAATAACTATAATATTTTTTTT
Done.