Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 289 of 297
Found at i:98401396 original size:28 final size:28
Alignment explanation
Indices: 98401354--98401435 Score: 137
Period size: 28 Copynumber: 2.9 Consensus size: 28
98401344 GTTGAATCAT
*
98401354 TCAATATTTCACACACTAAGTGGCATTC
1 TCAATATTTCACACACTAAGTGCCATTC
* *
98401382 TCAATATCTCGCACACTAAGTGCCATTC
1 TCAATATTTCACACACTAAGTGCCATTC
98401410 TCAATATTTCACACACTAAGTGCCAT
1 TCAATATTTCACACACTAAGTGCCAT
98401436 ATTTGATGTC
Statistics
Matches: 49, Mismatches: 5, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
28 49 1.00
ACGTcount: A:0.32, C:0.28, G:0.10, T:0.30
Consensus pattern (28 bp):
TCAATATTTCACACACTAAGTGCCATTC
Found at i:98401511 original size:40 final size:40
Alignment explanation
Indices: 98401449--98401659 Score: 144
Period size: 40 Copynumber: 5.6 Consensus size: 40
98401439 TGATGTCCTA
** ** *
98401449 CACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATATTTAGCCGAAGCTATCCCAAATCG
* * *
98401489 CACACTAAGTGCCAAATTTAGCCGAAGCTA-CACCGAACCG
1 CACACTAAGTGCCATATTTAGCCGAAGCTATC-CCAAATCG
* *
98401529 CACACTAAGTGCCATATTT----G-A--TGT-CC---T-A
1 CACACTAAGTGCCATATTTAGCCGAAGCTATCCCAAATCG
** ** *
98401557 CACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAATCG
1 CACACTAAGTGCCATATTTAGCCGAAGCTATCCCAAATCG
* * *
98401597 CACACTAAGTGCCAAATTTAGCCGAAGCTA-CACCGAACCG
1 CACACTAAGTGCCATATTTAGCCGAAGCTATC-CCAAATCG
98401637 CACACTAAGTGCCATATTTAGCC
1 CACACTAAGTGCCATATTTAGCC
98401660 AATATGTCAT
Statistics
Matches: 128, Mismatches: 28, Indels: 30
0.69 0.15 0.16
Matches are distributed among these distances:
28 15 0.12
32 3 0.02
33 2 0.02
35 3 0.02
36 2 0.02
39 3 0.02
40 100 0.78
ACGTcount: A:0.33, C:0.29, G:0.17, T:0.21
Consensus pattern (40 bp):
CACACTAAGTGCCATATTTAGCCGAAGCTATCCCAAATCG
Found at i:98401610 original size:108 final size:108
Alignment explanation
Indices: 98401421--98401655 Score: 470
Period size: 108 Copynumber: 2.2 Consensus size: 108
98401411 CAATATTTCA
98401421 CACACTAAGTGCCATATTTGATGTCCTACACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAA
1 CACACTAAGTGCCATATTTGATGTCCTACACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAA
98401486 TCGCACACTAAGTGCCAAATTTAGCCGAAGCTACACCGAACCG
66 TCGCACACTAAGTGCCAAATTTAGCCGAAGCTACACCGAACCG
98401529 CACACTAAGTGCCATATTTGATGTCCTACACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAA
1 CACACTAAGTGCCATATTTGATGTCCTACACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAA
98401594 TCGCACACTAAGTGCCAAATTTAGCCGAAGCTACACCGAACCG
66 TCGCACACTAAGTGCCAAATTTAGCCGAAGCTACACCGAACCG
98401637 CACACTAAGTGCCATATTT
1 CACACTAAGTGCCATATTT
98401656 AGCCAATATG
Statistics
Matches: 127, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
108 127 1.00
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (108 bp):
CACACTAAGTGCCATATTTGATGTCCTACACACTAAGTGCTGTACATAGCCGAAGCTATCTCAAA
TCGCACACTAAGTGCCAAATTTAGCCGAAGCTACACCGAACCG
Found at i:98402440 original size:9 final size:9
Alignment explanation
Indices: 98402420--98402452 Score: 50
Period size: 9 Copynumber: 3.7 Consensus size: 9
98402410 TTTTAGTTAA
98402420 TTAACTCATT
1 TTAAC-CATT
98402430 TTAACCATT
1 TTAACCATT
98402439 TT-ACCATT
1 TTAACCATT
98402447 TTAACC
1 TTAACC
98402453 TTTAACAACA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
8 8 0.36
9 9 0.41
10 5 0.23
ACGTcount: A:0.30, C:0.24, G:0.00, T:0.45
Consensus pattern (9 bp):
TTAACCATT
Found at i:98408172 original size:94 final size:94
Alignment explanation
Indices: 98408031--98408937 Score: 1764
Period size: 94 Copynumber: 9.7 Consensus size: 94
98408021 AGGATATGGC
* * *
98408031 ATCGGCATCGATA--TGTGATACCGTGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408094 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408123 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408188 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408217 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408282 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408311 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408376 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408405 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408470 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408499 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408564 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408593 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408658 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408687 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408752 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
98408781 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
98408846 AGAACATCGTGTAAGACCATAGTTGGGCT
66 AGAACATCGTGTAAGACCATAGTTGGGCT
*
98408875 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATTGATA
1 ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATA
98408938 AGTGGTCCCA
Statistics
Matches: 809, Mismatches: 4, Indels: 2
0.99 0.00 0.00
Matches are distributed among these distances:
92 12 0.01
94 797 0.99
ACGTcount: A:0.27, C:0.19, G:0.27, T:0.28
Consensus pattern (94 bp):
ATCGGCTTCGATATGTGTGATCCCATGTAAGACCATGTCTGGGACATGGCATTGGCATCGATATA
AGAACATCGTGTAAGACCATAGTTGGGCT
Found at i:98416432 original size:49 final size:49
Alignment explanation
Indices: 98416373--98416498 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 49
98416363 ATTAATGTAA
* *
98416373 ATGCCGTGTCCCAGACAGGTCTTGCACTGACTTTCATATATCAAG-GACG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATC-AGTGACG
* * * * * * *
98416422 ATGCCATGTCCCAGGCAAGTCTTACACTGGCTTTTATCTATCGGTGTCG
1 ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGTGACG
*
98416471 ATGCCATGTCCTAGACAGGTCTTACACT
1 ATGCCATGTCCCAGACAGGTCTTACACT
98416499 AACAACAAGC
Statistics
Matches: 64, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 1 0.02
49 63 0.98
ACGTcount: A:0.22, C:0.27, G:0.21, T:0.29
Consensus pattern (49 bp):
ATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATATCAGTGACG
Found at i:98418352 original size:50 final size:49
Alignment explanation
Indices: 98418231--98418362 Score: 165
Period size: 50 Copynumber: 2.7 Consensus size: 49
98418221 GTGTAATGTT
*
98418231 GATGCCATGTCCCAGACATGGTCTTACATTGACTATCAAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCC
* * * ** ***
98418280 GACGCCATGTCCCAGACATGGTCTTACACTGGCTCTCACATCTCTCTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAATCGAGGCC
*
98418330 GATGCCATGTCCCAAACATGGTCTTACACTGAC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC
98418363 ACATCTCATA
Statistics
Matches: 70, Mismatches: 12, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
49 34 0.49
50 36 0.51
ACGTcount: A:0.24, C:0.32, G:0.19, T:0.25
Consensus pattern (49 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATCGAGGCC
Found at i:98421971 original size:48 final size:48
Alignment explanation
Indices: 98421910--98422175 Score: 186
Period size: 48 Copynumber: 5.6 Consensus size: 48
98421900 GGGTTGATGA
* * *
98421910 GATCCCGTATAAGACCATATCTGGGATATGGCATCGGCATCGATATGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
* * * ** *
98421958 GATCCCATGTAAGACCATGTCTGGGACATGACATTTTCATCGTTATGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
* * *
98422006 GATCCCATGTAAGACCAT-GCTTGGGACATGGCATTGGCATCGATATGA
1 GATCCCATGTAAGACCATATC-TGGGATATGGCATTGGCATCGATATGT
* * * * * * *
98422054 AAACATCGTGTAAGACCATAGT-TGGGCTATTGGC-TTCG-AT--ATGTGT
1 GATC-CCATGTAAGACCATA-TCTGGGATA-TGGCATTGGCATCGATATGT
* * * * *
98422100 GATACCATGTAAGACCATGTTTGGGAAATGGCATTGGCATCGATAAGT
1 GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
* * * *
98422148 GGTCTCATATAAGATCATAT-TCGGGATA
1 GATCCCATGTAAGACCATATCT-GGGATA
98422176 CAGTATTAGC
Statistics
Matches: 164, Mismatches: 43, Indels: 22
0.72 0.19 0.10
Matches are distributed among these distances:
44 5 0.03
45 20 0.12
46 7 0.04
47 2 0.01
48 106 0.65
49 20 0.12
50 4 0.02
ACGTcount: A:0.28, C:0.18, G:0.25, T:0.29
Consensus pattern (48 bp):
GATCCCATGTAAGACCATATCTGGGATATGGCATTGGCATCGATATGT
Found at i:98425014 original size:40 final size:40
Alignment explanation
Indices: 98424965--98425048 Score: 107
Period size: 40 Copynumber: 2.1 Consensus size: 40
98424955 GTGCTGTACA
* * *
98424965 TAGCTGAAGCTAT-CTCAAATCGCACATTAAGTGCCAAATT
1 TAGCCGAAGCTATAC-CAAACCGCACACTAAGTGCCAAATT
* *
98425005 TAGCCGAAGCTATACCGAACCGCACACTAAGTGCCATATT
1 TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
98425045 TAGC
1 TAGC
98425049 TGATATGTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
40 37 0.97
41 1 0.03
ACGTcount: A:0.33, C:0.26, G:0.17, T:0.24
Consensus pattern (40 bp):
TAGCCGAAGCTATACCAAACCGCACACTAAGTGCCAAATT
Found at i:98429419 original size:22 final size:21
Alignment explanation
Indices: 98429384--98429459 Score: 75
Period size: 19 Copynumber: 3.7 Consensus size: 21
98429374 AAAGGATATC
*
98429384 TACAAATCAAATCTCCAAGAT
1 TACAAATCATATCTCCAAGAT
*
98429405 TACAAGATCATATCTTCAAGAT
1 TACAA-ATCATATCTCCAAGAT
* *
98429427 TGCATATCATATCT--AAGAT
1 TACAAATCATATCTCCAAGAT
* *
98429446 TGCATATCATATCT
1 TACAAATCATATCT
98429460 AAGATTGTAT
Statistics
Matches: 50, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
19 19 0.38
21 14 0.28
22 17 0.34
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (21 bp):
TACAAATCATATCTCCAAGAT
Found at i:98429446 original size:19 final size:19
Alignment explanation
Indices: 98429411--98429508 Score: 155
Period size: 19 Copynumber: 5.2 Consensus size: 19
98429401 AGATTACAAG
98429411 ATCATATCTTCAAGATTGCAT
1 ATCATATC-T-AAGATTGCAT
98429432 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98429451 ATCATATCTAAGATTG--T
1 ATCATATCTAAGATTGCAT
*
98429468 ATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGCAT
98429487 ATCATATCTAAGATTGCAT
1 ATCATATCTAAGATTGCAT
98429506 ATC
1 ATC
98429509 CTTAAAGATT
Statistics
Matches: 73, Mismatches: 2, Indels: 6
0.90 0.02 0.07
Matches are distributed among these distances:
17 16 0.22
19 48 0.66
20 1 0.01
21 8 0.11
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (19 bp):
ATCATATCTAAGATTGCAT
Found at i:98429475 original size:36 final size:37
Alignment explanation
Indices: 98429411--98429508 Score: 144
Period size: 36 Copynumber: 2.6 Consensus size: 37
98429401 AGATTACAAG
98429411 ATCATATCTTCAAGATTGCATATCATATCTAAGATTGCAT
1 ATCATATC-T-AAGATTG-ATATCATATCTAAGATTGCAT
*
98429451 ATCATATCTAAGATTG-TATCATATCTAATATTGCAT
1 ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
98429487 ATCATATCTAAGATTGCATATC
1 ATCATATCTAAGATTG-ATATC
98429509 CTTAAAGATT
Statistics
Matches: 55, Mismatches: 1, Indels: 6
0.89 0.02 0.10
Matches are distributed among these distances:
36 35 0.64
38 11 0.20
39 1 0.02
40 8 0.15
ACGTcount: A:0.36, C:0.16, G:0.09, T:0.39
Consensus pattern (37 bp):
ATCATATCTAAGATTGATATCATATCTAAGATTGCAT
Found at i:98431283 original size:14 final size:14
Alignment explanation
Indices: 98431264--98431297 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
98431254 GATTATATTA
*
98431264 TTACAAAGGAAACT
1 TTACAAAAGAAACT
*
98431278 TTACAAAAGAAAGT
1 TTACAAAAGAAACT
98431292 TTACAA
1 TTACAA
98431298 GGAGAGGATA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.53, C:0.12, G:0.12, T:0.24
Consensus pattern (14 bp):
TTACAAAAGAAACT
Found at i:98433223 original size:15 final size:15
Alignment explanation
Indices: 98433199--98433228 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
98433189 ATCCTAAAAA
*
98433199 TTCTATTTCTATTTT
1 TTCTAATTCTATTTT
98433214 TTCTAATTCTATTTT
1 TTCTAATTCTATTTT
98433229 CTTAGGACTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.17, C:0.13, G:0.00, T:0.70
Consensus pattern (15 bp):
TTCTAATTCTATTTT
Found at i:98438718 original size:31 final size:31
Alignment explanation
Indices: 98438677--98438740 Score: 101
Period size: 31 Copynumber: 2.1 Consensus size: 31
98438667 CCTTTTCATA
*
98438677 TTTCATATTTCATAACACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
**
98438708 TTTCAAATTTCATATTACTGGGCCGAAGCCT
1 TTTCAAATTTCATAACACTGGGCCGAAGCCT
98438739 TT
1 TT
98438741 ACTGTAAACG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
31 30 1.00
ACGTcount: A:0.25, C:0.23, G:0.16, T:0.36
Consensus pattern (31 bp):
TTTCAAATTTCATAACACTGGGCCGAAGCCT
Found at i:98438982 original size:25 final size:26
Alignment explanation
Indices: 98438954--98439030 Score: 133
Period size: 24 Copynumber: 3.1 Consensus size: 26
98438944 GCCTAGCCTC
98438954 TTTTAATAACTGGGGCA-AAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
98438979 TTTTAATAACTGGGGCATAAGCCC--
1 TTTTAATAACTGGGGCATAAGCCCTT
98439003 TTTTAATAACTGGGGCATAAGCCCTT
1 TTTTAATAACTGGGGCATAAGCCCTT
98439029 TT
1 TT
98439031 GCACTTCCTC
Statistics
Matches: 49, Mismatches: 0, Indels: 5
0.91 0.00 0.09
Matches are distributed among these distances:
24 24 0.49
25 17 0.35
26 8 0.16
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.34
Consensus pattern (26 bp):
TTTTAATAACTGGGGCATAAGCCCTT
Found at i:98439009 original size:49 final size:51
Alignment explanation
Indices: 98438934--98439030 Score: 155
Period size: 49 Copynumber: 1.9 Consensus size: 51
98438924 GCTTTATCAT
*
98438934 ATAACTGGAGGCCTAGCCTCTTTTAATAACTGGGGCA-AAGCCCTTTTTTA
1 ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTTTTA
98438984 ATAACTGG-GGCATAAGCC-CTTTTAATAACTGGGGCATAAGCCCTTTT
1 ATAACTGGAGGCAT-AGCCTCTTTTAATAACTGGGGCATAAGCCCTTTT
98439031 GCACTTCCTC
Statistics
Matches: 44, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
49 22 0.50
50 22 0.50
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.31
Consensus pattern (51 bp):
ATAACTGGAGGCATAGCCTCTTTTAATAACTGGGGCATAAGCCCTTTTTTA
Found at i:98439102 original size:9 final size:9
Alignment explanation
Indices: 98439088--98439144 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
98439078 ATCTCATGTG
98439088 CATATCATA
1 CATATCATA
*
98439097 CATATCATGTG
1 CATATCA--TA
98439108 CATATCATA
1 CATATCATA
* *
98439117 CATGTCATGTG
1 CATATCA--TA
98439128 CATATCATA
1 CATATCATA
98439137 CATATCAT
1 CATATCAT
98439145 GTTTATCAAA
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.21, G:0.09, T:0.35
Consensus pattern (9 bp):
CATATCATA
Found at i:98439104 original size:20 final size:20
Alignment explanation
Indices: 98439076--98439146 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
98439066 GCATTTATGA
*
98439076 ACATCTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
98439096 ACATATCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
*
98439116 ACATGTCATGTGCATATCAT
1 ACATATCATGTGCATATCAT
98439136 ACATATCATGT
1 ACATATCATGT
98439147 TTATCAAAAT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.32, C:0.21, G:0.11, T:0.35
Consensus pattern (20 bp):
ACATATCATGTGCATATCAT
Found at i:98439111 original size:11 final size:11
Alignment explanation
Indices: 98439081--98439135 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
98439071 TATGAACATC
98439081 TCATGTGCATA
1 TCATGTGCATA
*
98439092 TCA--TACATA
1 TCATGTGCATA
98439101 TCATGTGCATA
1 TCATGTGCATA
* *
98439112 TCA--TACATG
1 TCATGTGCATA
98439121 TCATGTGCATA
1 TCATGTGCATA
98439132 TCAT
1 TCAT
98439136 ACATATCATG
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.31, C:0.20, G:0.13, T:0.36
Consensus pattern (11 bp):
TCATGTGCATA
Found at i:98440450 original size:27 final size:27
Alignment explanation
Indices: 98440389--98440465 Score: 77
Period size: 27 Copynumber: 2.9 Consensus size: 27
98440379 GGCATATTCG
*
98440389 TCATTTTACCATACAGGGGTATTACGG
1 TCATTTTACCATACAGGGGTATTACGA
* *
98440416 TCACTTTACCCTACAGGGGCT-TTACGA
1 TCATTTTACCATACAGGGG-TATTACGA
* *
98440443 TCTTTTTACC-TAATAGGGGTATT
1 TCATTTTACCAT-ACAGGGGTATT
98440466 TTAGTCATTT
Statistics
Matches: 41, Mismatches: 6, Indels: 6
0.77 0.11 0.11
Matches are distributed among these distances:
26 2 0.05
27 38 0.93
28 1 0.02
ACGTcount: A:0.23, C:0.21, G:0.19, T:0.36
Consensus pattern (27 bp):
TCATTTTACCATACAGGGGTATTACGA
Found at i:98440536 original size:27 final size:27
Alignment explanation
Indices: 98440506--98440762 Score: 174
Period size: 27 Copynumber: 9.4 Consensus size: 27
98440496 GTAAATCAAC
* *
98440506 AAACCAAAGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
* *
98440533 AAACCAATGGTATTTCTA-TAATTTTTAG
1 AAACCAAGGGTATTT-TAGTAA-TTTTAT
* * * *
98440561 AAAGTCAAGGGTATTTTTGTAACTTTGT
1 AAA-CCAAGGGTATTTTAGTAATTTTAT
** * * *
98440589 AAATTAGGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTAT
*** * * *
98440616 AAATTGAGGGTATTTCAGTAATTTCAC
1 AAACCAAGGGTATTTTAGTAATTTTAT
* *
98440643 AAACCAAGGGTATTTTGGTAATTTTAC
1 AAACCAAGGGTATTTTAGTAATTTTAT
* * * *
98440670 AAACTAGGGGTATTTTGGTAATTTTAA
1 AAACCAAGGGTATTTTAGTAATTTTAT
*
98440697 AAACCAAGGGTATTTTAGTAATTTTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
* * *** * *
98440724 AAATCGAGGGTAAAATAGTAATTCTGT
1 AAACCAAGGGTATTTTAGTAATTTTAT
*
98440751 AAATCAAGGGTA
1 AAACCAAGGGTA
98440763 AAACAGTAAT
Statistics
Matches: 185, Mismatches: 41, Indels: 8
0.79 0.18 0.03
Matches are distributed among these distances:
27 156 0.84
28 16 0.09
29 13 0.07
ACGTcount: A:0.35, C:0.08, G:0.19, T:0.39
Consensus pattern (27 bp):
AAACCAAGGGTATTTTAGTAATTTTAT
Found at i:98440687 original size:81 final size:81
Alignment explanation
Indices: 98440514--98440720 Score: 227
Period size: 81 Copynumber: 2.5 Consensus size: 81
98440504 ACAAACCAAA
* ** * * * *
98440514 GGTATTTTAGTAATTTTGTAAACCAATGGTATTTCTA-TAATTTTTAGAAAGTCAAGGGTATTTT
1 GGTATTTTGGTAATTTTAAAAACCAAGGGTATTTC-AGTAA-TTTCACAAA-CCAAGGGTATTTT
* ** *
98440578 TGTAACTTTGTAAATTAGG
63 GGTAACTTTACAAACTAGG
* ***
98440597 GGTATTTTGGTAATTTTACAAATTGAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGT
1 GGTATTTTGGTAATTTTAAAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGT
*
98440662 AATTTTACAAACTAGG
66 AACTTTACAAACTAGG
*
98440678 GGTATTTTGGTAATTTTAAAAACCAAGGGTATTTTAGTAATTT
1 GGTATTTTGGTAATTTTAAAAACCAAGGGTATTTCAGTAATTT
98440721 TGTAAATCGA
Statistics
Matches: 103, Mismatches: 20, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
81 64 0.62
82 8 0.08
83 31 0.30
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.42
Consensus pattern (81 bp):
GGTATTTTGGTAATTTTAAAAACCAAGGGTATTTCAGTAATTTCACAAACCAAGGGTATTTTGGT
AACTTTACAAACTAGG
Found at i:98440827 original size:55 final size:55
Alignment explanation
Indices: 98440713--98440847 Score: 182
Period size: 55 Copynumber: 2.5 Consensus size: 55
98440703 AGGGTATTTT
* * * *
98440713 AGTAATTTTGTAAATCGAGGGT-AAAATAGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAAAAATAATTCTGTAAATCAAGCGTAAAAC
* * *
98440767 AGTAATTCTATAAATCGACGGTAAAAAAAATAATTCTGTAAATCGAGCGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAAAAATAATTCTGTAAATCAAGCGTAAAAC
* *
98440822 GGTAATTCTGTAAGTCGAGGGTAAAA
1 AGTAATTCTGTAAATCGAGGGTAAAA
98440848 CGGGGGTAAA
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
54 19 0.28
55 50 0.72
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (55 bp):
AGTAATTCTGTAAATCGAGGGTAAAAAAAATAATTCTGTAAATCAAGCGTAAAAC
Found at i:98440850 original size:27 final size:27
Alignment explanation
Indices: 98440713--98440848 Score: 173
Period size: 27 Copynumber: 5.0 Consensus size: 27
98440703 AGGGTATTTT
* *
98440713 AGTAATTTTGTAAATCGAGGGTAAAAT
1 AGTAATTCTGTAAATCGAGGGTAAAAC
*
98440740 AGTAATTCTGTAAATCAAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* * *
98440767 AGTAATTCTATAAATCGACGGTAAAAAA
1 AGTAATTCTGTAAATCGAGGGT-AAAAC
* *
98440795 AATAATTCTGTAAATCGAGCGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
* *
98440822 GGTAATTCTGTAAGTCGAGGGTAAAAC
1 AGTAATTCTGTAAATCGAGGGTAAAAC
98440849 GGGGGTAAAA
Statistics
Matches: 92, Mismatches: 16, Indels: 2
0.84 0.15 0.02
Matches are distributed among these distances:
27 70 0.76
28 22 0.24
ACGTcount: A:0.43, C:0.10, G:0.20, T:0.27
Consensus pattern (27 bp):
AGTAATTCTGTAAATCGAGGGTAAAAC
Found at i:98440872 original size:27 final size:27
Alignment explanation
Indices: 98440842--98440920 Score: 140
Period size: 27 Copynumber: 2.9 Consensus size: 27
98440832 TAAGTCGAGG
* *
98440842 GTAAAACGGGGGTAAAATAGTAATTAT
1 GTAAATCGGGGGTAAAATGGTAATTAT
98440869 GTAAATCGGGGGTAAAATGGTAATTAT
1 GTAAATCGGGGGTAAAATGGTAATTAT
98440896 GTAAATCGGGGGTAAAATGGTAATT
1 GTAAATCGGGGGTAAAATGGTAATT
98440921 TTACATGTCG
Statistics
Matches: 50, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 50 1.00
ACGTcount: A:0.39, C:0.04, G:0.29, T:0.28
Consensus pattern (27 bp):
GTAAATCGGGGGTAAAATGGTAATTAT
Found at i:98440945 original size:27 final size:27
Alignment explanation
Indices: 98440915--98441004 Score: 110
Period size: 27 Copynumber: 3.3 Consensus size: 27
98440905 GGGTAAAATG
**
98440915 GTAATTTTACATGTCGAAGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
*
98440942 GTAATTTTACAAATCGAGGGTATTTCA
1 GTAATTTTACAAATCGAAGGTATTTCA
* * *
98440969 GTATTTTTACAAA-CTAAGCGTATTTCG
1 GTAATTTTACAAATCGAAG-GTATTTCA
98440996 GTAATTTTA
1 GTAATTTTA
98441005 GTAAACTAAA
Statistics
Matches: 54, Mismatches: 8, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
26 3 0.06
27 51 0.94
ACGTcount: A:0.31, C:0.11, G:0.17, T:0.41
Consensus pattern (27 bp):
GTAATTTTACAAATCGAAGGTATTTCA
Found at i:98441011 original size:28 final size:27
Alignment explanation
Indices: 98440934--98441013 Score: 90
Period size: 27 Copynumber: 2.9 Consensus size: 27
98440924 CATGTCGAAG
* *
98440934 GTATTTCAGTAATTTTACAAA-TCGAGG
1 GTATTTCAGTAATTTTACAAACT-AAGC
*
98440961 GTATTTCAGTATTTTTACAAACTAAGC
1 GTATTTCAGTAATTTTACAAACTAAGC
* *
98440988 GTATTTCGGTAATTTTAGTAAACTAA
1 GTATTTCAGTAATTTTA-CAAACTAA
98441014 AGTATTCTAA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
27 37 0.82
28 8 0.18
ACGTcount: A:0.34, C:0.11, G:0.15, T:0.40
Consensus pattern (27 bp):
GTATTTCAGTAATTTTACAAACTAAGC
Found at i:98443028 original size:24 final size:23
Alignment explanation
Indices: 98443001--98443045 Score: 56
Period size: 23 Copynumber: 1.9 Consensus size: 23
98442991 ACTTGAGTTG
98443001 TAAACGCAAAGAAAAA-CTTCAACT
1 TAAAC-CAAA-AAAAATCTTCAACT
*
98443025 TAAACTAAAAAAAATCTTCAA
1 TAAACCAAAAAAAATCTTCAA
98443046 TCAACCAACT
Statistics
Matches: 19, Mismatches: 1, Indels: 3
0.83 0.04 0.13
Matches are distributed among these distances:
22 5 0.26
23 9 0.47
24 5 0.26
ACGTcount: A:0.58, C:0.18, G:0.04, T:0.20
Consensus pattern (23 bp):
TAAACCAAAAAAAATCTTCAACT
Found at i:98444730 original size:3 final size:3
Alignment explanation
Indices: 98444715--98444760 Score: 65
Period size: 3 Copynumber: 15.3 Consensus size: 3
98444705 TGAAGTGCAG
* * *
98444715 TAT TAT GAT TAT TAT TAC TAT TGT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
98444761 TATGTACAAG
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
3 37 1.00
ACGTcount: A:0.30, C:0.02, G:0.04, T:0.63
Consensus pattern (3 bp):
TAT
Found at i:98447130 original size:78 final size:77
Alignment explanation
Indices: 98447028--98447179 Score: 259
Period size: 78 Copynumber: 2.0 Consensus size: 77
98447018 GACACTTTTT
* * *
98447028 TTTTGACATGTCAACTCTCGTAATGAGATGGTCACGTATTATTATTTTTATCTCAAAGTTTGATT
1 TTTTGACATGTCAACCCTCGTAATGAGATGGTCACGTATTACTATTTTCATCTC-AAGTTTGATT
98447093 CCTATCTTAATTC
65 CCTATCTTAATTC
*
98447106 TTTTGACATGTCAACCCTCTTAATGAGATGGTCACGTATTACTATTTTCATCTCAAGTTTGATTC
1 TTTTGACATGTCAACCCTCGTAATGAGATGGTCACGTATTACTATTTTCATCTCAAGTTTGATTC
98447171 CTATCTTAA
66 CTATCTTAA
98447180 GCACTATTTT
Statistics
Matches: 70, Mismatches: 4, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
77 20 0.29
78 50 0.71
ACGTcount: A:0.26, C:0.18, G:0.12, T:0.43
Consensus pattern (77 bp):
TTTTGACATGTCAACCCTCGTAATGAGATGGTCACGTATTACTATTTTCATCTCAAGTTTGATTC
CTATCTTAATTC
Found at i:98447624 original size:45 final size:45
Alignment explanation
Indices: 98447550--98447706 Score: 190
Period size: 45 Copynumber: 3.4 Consensus size: 45
98447540 TTATAAAATC
**
98447550 AAATAATTATTTCGAATATCATTATTATTTTTATATGT-ATAATATTTT
1 AAATAATTATTTC-AA-AT-ACCATTATTTTTATATGTGA-AATATTTT
* *
98447598 AAATAATTATTCCAAATACCATTATTTTTATATGTGAAATATTTC
1 AAATAATTATTTCAAATACCATTATTTTTATATGTGAAATATTTT
* * * * *
98447643 AATTAACTATTTCAAATATCACTATTATTATATGTGAAATATTTT
1 AAATAATTATTTCAAATACCATTATTTTTATATGTGAAATATTTT
98447688 AAATAATTATTTCAAATAC
1 AAATAATTATTTCAAATAC
98447707 ACACACAAAA
Statistics
Matches: 94, Mismatches: 14, Indels: 5
0.83 0.12 0.04
Matches are distributed among these distances:
45 77 0.82
46 3 0.03
47 2 0.02
48 12 0.13
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (45 bp):
AAATAATTATTTCAAATACCATTATTTTTATATGTGAAATATTTT
Found at i:98451520 original size:24 final size:24
Alignment explanation
Indices: 98451493--98451543 Score: 84
Period size: 24 Copynumber: 2.1 Consensus size: 24
98451483 ATGAAATGGC
98451493 AAAAGTCGAAATACCGAAAAGCTG
1 AAAAGTCGAAATACCGAAAAGCTG
* *
98451517 AAAAGTTGAAATGCCGAAAAGCTG
1 AAAAGTCGAAATACCGAAAAGCTG
98451541 AAA
1 AAA
98451544 GTTGGGCTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.51, C:0.14, G:0.22, T:0.14
Consensus pattern (24 bp):
AAAAGTCGAAATACCGAAAAGCTG
Found at i:98451664 original size:19 final size:19
Alignment explanation
Indices: 98451640--98451676 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
98451630 ACTTGGGTTG
98451640 AGAATTGGCCAAATGGGTC
1 AGAATTGGCCAAATGGGTC
*
98451659 AGAATTGGCTAAATGGGT
1 AGAATTGGCCAAATGGGT
98451677 TGATGGGCTG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.24
Consensus pattern (19 bp):
AGAATTGGCCAAATGGGTC
Found at i:98451799 original size:29 final size:28
Alignment explanation
Indices: 98451754--98451872 Score: 116
Period size: 29 Copynumber: 4.2 Consensus size: 28
98451744 GTGAGCATGA
*
98451754 ATAT-AATATGATTTGGGCCTAATAGGCC
1 ATATGAATATGA-TTGGGCCTAATGGGCC
* *
98451782 ATATGAATGTGTATTGGGCCTAGTGGGCC
1 ATATGAATATG-ATTGGGCCTAATGGGCC
* * *
98451811 ATAAGAATATGAACTAGGCC-AGATGGGCC
1 ATATGAATATG-ATTGGGCCTA-ATGGGCC
* *
98451840 ATATGAATAAGATTGGGCCTAGTGGGCC
1 ATATGAATATGATTGGGCCTAATGGGCC
98451868 ATATG
1 ATATG
98451873 CATGTATGTA
Statistics
Matches: 73, Mismatches: 14, Indels: 8
0.77 0.15 0.08
Matches are distributed among these distances:
28 22 0.30
29 50 0.68
30 1 0.01
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (28 bp):
ATATGAATATGATTGGGCCTAATGGGCC
Found at i:98453767 original size:15 final size:15
Alignment explanation
Indices: 98453747--98453777 Score: 53
Period size: 15 Copynumber: 2.1 Consensus size: 15
98453737 AGGTTTAGGT
98453747 AGCTGGCTTTCCAAC
1 AGCTGGCTTTCCAAC
*
98453762 AGCTGGTTTTCCAAC
1 AGCTGGCTTTCCAAC
98453777 A
1 A
98453778 AGGTTTGGGC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.23, C:0.29, G:0.19, T:0.29
Consensus pattern (15 bp):
AGCTGGCTTTCCAAC
Found at i:98469241 original size:294 final size:294
Alignment explanation
Indices: 98468712--98469298 Score: 1147
Period size: 294 Copynumber: 2.0 Consensus size: 294
98468702 ATTTTCGGAT
98468712 TTATTCGCAGTTTTCAATATTTTGTAAAGATTTTAAAATTTTGTATTTGGATGTGGAATTAATAT
1 TTATTCGCAGTTTTCAATATTTTGTAAAGATTTTAAAATTTTGTATTTGGATGTGGAATTAATAT
98468777 TTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTAGCCAAAACCCAGTTGAATTTTTGAA
66 TTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTAGCCAAAACCCAGTTGAATTTTTGAA
98468842 TTTTGGACTTAGGAGTTAGGGGTTCTGGCTAGGTGGTCCTTGTATAGAGTTATGGGCAAATTGCA
131 TTTTGGACTTAGGAGTTAGGGGTTCTGGCTAGGTGGTCCTTGTATAGAGTTATGGGCAAATTGCA
* *
98468907 TCACAAAAAGAGCCTTAGTAAAGTGGCAAGGGTGACGCCACTAGGCTCCTAAAAAGGTGGCGTGT
196 TCACAAAAAGAGCCTTAGTAAAGTGGCAAGGGTGACGCCACTAAGATCCTAAAAAGGTGGCGTGT
98468972 GGAGCATTGGGGAAGGCATGGGATCAATTCCCTA
261 GGAGCATTGGGGAAGGCATGGGATCAATTCCCTA
98469006 TTATTCGCAGTTTTCAATATTTTGTAAAGATTTTAAAATTTTGTATTTGGATGTGGAATTAATAT
1 TTATTCGCAGTTTTCAATATTTTGTAAAGATTTTAAAATTTTGTATTTGGATGTGGAATTAATAT
98469071 TTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTAGCCAAAACCCAGTTGAATTTTTGAA
66 TTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTAGCCAAAACCCAGTTGAATTTTTGAA
98469136 TTTTGGACTTAGGAGTTAGGGGTTCTGGCTAGGTGGTCCTTGTATAGAGTTATGGGCAAATTGCA
131 TTTTGGACTTAGGAGTTAGGGGTTCTGGCTAGGTGGTCCTTGTATAGAGTTATGGGCAAATTGCA
98469201 TCACAAAAAGAGCCTTAGTAAAGTGGCAAGGGTGACGCCACTAAGATCCTAAAAAGGTGGCGTGT
196 TCACAAAAAGAGCCTTAGTAAAGTGGCAAGGGTGACGCCACTAAGATCCTAAAAAGGTGGCGTGT
*
98469266 GGAGCATTGGGGAAGGCATGGGATCGATTCCCT
261 GGAGCATTGGGGAAGGCATGGGATCAATTCCCT
98469299 GTGTTGACAA
Statistics
Matches: 290, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
294 290 1.00
ACGTcount: A:0.28, C:0.13, G:0.27, T:0.32
Consensus pattern (294 bp):
TTATTCGCAGTTTTCAATATTTTGTAAAGATTTTAAAATTTTGTATTTGGATGTGGAATTAATAT
TTTGAGTAGGTAAATGGGCTTATAGAAGGCCCATGTGTTAGCCAAAACCCAGTTGAATTTTTGAA
TTTTGGACTTAGGAGTTAGGGGTTCTGGCTAGGTGGTCCTTGTATAGAGTTATGGGCAAATTGCA
TCACAAAAAGAGCCTTAGTAAAGTGGCAAGGGTGACGCCACTAAGATCCTAAAAAGGTGGCGTGT
GGAGCATTGGGGAAGGCATGGGATCAATTCCCTA
Found at i:98479870 original size:27 final size:27
Alignment explanation
Indices: 98479840--98480017 Score: 178
Period size: 27 Copynumber: 6.6 Consensus size: 27
98479830 ATATTGAGTC
* *
98479840 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
98479867 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
98479894 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
98479922 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* ***
98479949 CGCACACTTAGTGC-ATCATATTCGTTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * *
98479976 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
98480003 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
98480018 GTACAATTTA
Statistics
Matches: 127, Mismatches: 21, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
27 103 0.81
28 24 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:98490353 original size:31 final size:31
Alignment explanation
Indices: 98490315--98490376 Score: 97
Period size: 31 Copynumber: 2.0 Consensus size: 31
98490305 AGGTCCAAGC
* *
98490315 GGTGGTGGCATGATTCAATTCACCAACTTTT
1 GGTGGTGGCATGATTAAATCCACCAACTTTT
*
98490346 GGTGGTGGCATGATTAAATCCACTAACTTTT
1 GGTGGTGGCATGATTAAATCCACCAACTTTT
98490377 AGGCTATTTG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 28 1.00
ACGTcount: A:0.24, C:0.18, G:0.23, T:0.35
Consensus pattern (31 bp):
GGTGGTGGCATGATTAAATCCACCAACTTTT
Found at i:98493107 original size:20 final size:20
Alignment explanation
Indices: 98493082--98493267 Score: 83
Period size: 20 Copynumber: 9.3 Consensus size: 20
98493072 TAAATGCCTT
* *
98493082 CAGGGGTACCGAAGTACAAG
1 CAGGGGTACAGAAGTACAAA
* * * *
98493102 CAGGGGCACATATGTACAAT
1 CAGGGGTACAGAAGTACAAA
*
98493122 CAGGGGTACTGAAGTACAAA
1 CAGGGGTACAGAAGTACAAA
* * * **
98493142 CAGGGGCACATATGTGGAAA
1 CAGGGGTACAGAAGTACAAA
98493162 CAGGGGTATCA-AAGTACAAA
1 CAGGGGTA-CAGAAGTACAAA
* * * *
98493182 CCA-TGGTA-TGTATGTGCAAA
1 -CAGGGGTACAG-AAGTACAAA
*
98493202 CAGGGGTATC-GATGTACAAA
1 CAGGGGTA-CAGAAGTACAAA
* * * * * *
98493222 TAGGAGTACATATGTGCAAT
1 CAGGGGTACAGAAGTACAAA
* *
98493242 TAGGGGTACTGAAGTACAAA
1 CAGGGGTACAGAAGTACAAA
98493262 CAGGGG
1 CAGGGG
98493268 CACGTATGTG
Statistics
Matches: 120, Mismatches: 38, Indels: 16
0.69 0.22 0.09
Matches are distributed among these distances:
19 3 0.03
20 112 0.93
21 5 0.04
ACGTcount: A:0.36, C:0.15, G:0.30, T:0.19
Consensus pattern (20 bp):
CAGGGGTACAGAAGTACAAA
Found at i:98493136 original size:40 final size:40
Alignment explanation
Indices: 98493081--98493283 Score: 205
Period size: 40 Copynumber: 5.1 Consensus size: 40
98493071 GTAAATGCCT
* * *
98493081 TCAGGGGTACCGAAGTACAAGCAGGGGCACATATGTACAA
1 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
*
98493121 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGGAA
1 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
* * * * **
98493161 ACAGGGGTA-TCAAAGTACAAACCA-TGGTATGTATGTGCAA
1 TCAGGGGTACT-GAAGTACAAA-CAGGGGCACATATGTGCAA
* * * * *
98493201 ACAGGGGTA-TCGATGTACAAATAGGAGTACATATGTGCAA
1 TCAGGGGTACT-GAAGTACAAACAGGGGCACATATGTGCAA
* *
98493241 TTAGGGGTACTGAAGTACAAACAGGGGCACGTATGTGCAA
1 TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
98493281 TCA
1 TCA
98493284 TTCAATAAAC
Statistics
Matches: 133, Mismatches: 26, Indels: 8
0.80 0.16 0.05
Matches are distributed among these distances:
39 2 0.02
40 128 0.96
41 3 0.02
ACGTcount: A:0.35, C:0.16, G:0.29, T:0.20
Consensus pattern (40 bp):
TCAGGGGTACTGAAGTACAAACAGGGGCACATATGTGCAA
Found at i:98497285 original size:31 final size:29
Alignment explanation
Indices: 98497250--98497324 Score: 73
Period size: 28 Copynumber: 2.6 Consensus size: 29
98497240 TAAAAATTAA
98497250 TTTTATCATAATGAAATATAT-TTTATATATT
1 TTTTATCAT-AT-AAATATATATTTA-ATATT
* *
98497281 TTTTATTATATAATTATATATTTAATA-T
1 TTTTATCATATAAATATATATTTAATATT
* *
98497309 TTTAATTATATAAATA
1 TTTTATCATATAAATA
98497325 AAATAATTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 5
0.81 0.08 0.10
Matches are distributed among these distances:
28 15 0.38
29 10 0.26
30 6 0.15
31 8 0.21
ACGTcount: A:0.41, C:0.01, G:0.01, T:0.56
Consensus pattern (29 bp):
TTTTATCATATAAATATATATTTAATATT
Found at i:98497314 original size:20 final size:22
Alignment explanation
Indices: 98497272--98497320 Score: 66
Period size: 22 Copynumber: 2.3 Consensus size: 22
98497262 GAAATATATT
**
98497272 TTATATATTTTTTATTATATAA
1 TTATATATTTAATATTATATAA
98497294 TTATATATTTAATATT-T-TAA
1 TTATATATTTAATATTATATAA
98497314 TTATATA
1 TTATATA
98497321 AATAAAATAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
20 10 0.40
21 1 0.04
22 14 0.56
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (22 bp):
TTATATATTTAATATTATATAA
Found at i:98497344 original size:17 final size:17
Alignment explanation
Indices: 98497311--98497343 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
98497301 TTTAATATTT
98497311 TAATTATATAAATAAAA
1 TAATTATATAAATAAAA
*
98497328 TAATTAT-TAATTAAAA
1 TAATTATATAAATAAAA
98497344 AGATAAACTA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 8 0.53
17 7 0.47
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (17 bp):
TAATTATATAAATAAAA
Found at i:98502006 original size:29 final size:29
Alignment explanation
Indices: 98501959--98502017 Score: 93
Period size: 29 Copynumber: 2.0 Consensus size: 29
98501949 TATATTCACG
98501959 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCCTAAATCACATTTATA
*
98501988 TGGCCCTTTAGGCAC-AAATCACATTTATA
1 TGGCCCATTAGGC-CTAAATCACATTTATA
98502017 T
1 T
98502018 TCATGCTCAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
29 27 0.96
30 1 0.04
ACGTcount: A:0.31, C:0.24, G:0.14, T:0.32
Consensus pattern (29 bp):
TGGCCCATTAGGCCTAAATCACATTTATA
Found at i:98509974 original size:20 final size:19
Alignment explanation
Indices: 98509943--98509988 Score: 65
Period size: 20 Copynumber: 2.4 Consensus size: 19
98509933 GAGGCATTAT
* *
98509943 TTATATAGGGAAAGAATGA
1 TTATTTAGGGAAAGAACGA
98509962 TTATTTNAGGGAAAGAACGA
1 TTATTT-AGGGAAAGAACGA
98509982 TTATTTA
1 TTATTTA
98509989 TACGGACCAT
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
19 6 0.25
20 18 0.75
ACGTcount: A:0.41, C:0.02, G:0.22, T:0.33
Consensus pattern (19 bp):
TTATTTAGGGAAAGAACGA
Found at i:98516860 original size:14 final size:14
Alignment explanation
Indices: 98516841--98516868 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
98516831 ATTCTCCAAT
98516841 TATAATAAATATGA
1 TATAATAAATATGA
98516855 TATAATAAATATGA
1 TATAATAAATATGA
98516869 GGAATAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.00, G:0.07, T:0.36
Consensus pattern (14 bp):
TATAATAAATATGA
Found at i:98518651 original size:30 final size:31
Alignment explanation
Indices: 98518600--98518658 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
98518590 GAAAGCATTT
*
98518600 TTTTTTGTAGAAAACATTTTTTCAAAAAGTG
1 TTTTTTGTAGAAAACAGTTTTTCAAAAAGTG
*
98518631 TTTTTTGTAGAAAGC-GTTTTTCAAAAAG
1 TTTTTTGTAGAAAACAGTTTTTCAAAAAG
98518659 GCTTTTGCAA
Statistics
Matches: 26, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
30 12 0.46
31 14 0.54
ACGTcount: A:0.34, C:0.07, G:0.15, T:0.44
Consensus pattern (31 bp):
TTTTTTGTAGAAAACAGTTTTTCAAAAAGTG
Found at i:98523170 original size:40 final size:40
Alignment explanation
Indices: 98523126--98523310 Score: 235
Period size: 40 Copynumber: 4.6 Consensus size: 40
98523116 CGATAAATCA
* * *
98523126 GCTATATGTGGCACTCAGTGTGCGATTCGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
* * *
98523166 GCTATATATGGCGCTTAGTGTGTGATTCGACATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
*
98523206 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTTG
1 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
* * *
98523246 GCTATATATGACACTTAGTGTGCGAGATTTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGC--GATTCGACATAGCTTCG
* * *
98523288 GCTATGTACGACACTTAGTGTGC
1 GCTATATATGGCACTTAGTGTGC
98523311 AAGACATCGA
Statistics
Matches: 129, Mismatches: 14, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
40 94 0.73
42 35 0.27
ACGTcount: A:0.22, C:0.17, G:0.27, T:0.34
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTTCG
Found at i:98524041 original size:56 final size:56
Alignment explanation
Indices: 98523950--98524063 Score: 192
Period size: 56 Copynumber: 2.0 Consensus size: 56
98523940 TTGTTGAGTA
* * *
98523950 TGAGTAATTTTGGTGATTGATGTAGATGTGCTTGATATGTATTTAGCTATGAGATT
1 TGAGCAATTTTGGTGATTGATGCAGATGTGCTTGATATGTATTTAGCCATGAGATT
*
98524006 TGAGCAATTTTGGTGATTGATGCAGATGTGTTTGATATGTATTTAGCCATGAGATT
1 TGAGCAATTTTGGTGATTGATGCAGATGTGCTTGATATGTATTTAGCCATGAGATT
98524062 TG
1 TG
98524064 GCCTGATAAT
Statistics
Matches: 54, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
56 54 1.00
ACGTcount: A:0.25, C:0.05, G:0.27, T:0.43
Consensus pattern (56 bp):
TGAGCAATTTTGGTGATTGATGCAGATGTGCTTGATATGTATTTAGCCATGAGATT
Found at i:98530162 original size:40 final size:40
Alignment explanation
Indices: 98530118--98530222 Score: 183
Period size: 40 Copynumber: 2.6 Consensus size: 40
98530108 CGACAAATTA
* *
98530118 GCTATATGTGGCACTTAGTGTGTGATTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGTGATTCGACATAGCTCCG
*
98530158 GCTATATATGGCACTTAGTGTGCGATTCGACATAGCTCCG
1 GCTATATATGGCACTTAGTGTGTGATTCGACATAGCTCCG
98530198 GCTATATATGGCACTTAGTGTGTGA
1 GCTATATATGGCACTTAGTGTGTGA
98530223 GATTTGAGAT
Statistics
Matches: 61, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.22, C:0.18, G:0.27, T:0.33
Consensus pattern (40 bp):
GCTATATATGGCACTTAGTGTGTGATTCGACATAGCTCCG
Found at i:98530235 original size:42 final size:41
Alignment explanation
Indices: 98530118--98530236 Score: 170
Period size: 40 Copynumber: 2.9 Consensus size: 41
98530108 CGACAAATTA
* *
98530118 GCTATATGTGGCACTTAGTGTGT-GATTCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGTGGATTCGACATAGCTCCG
*
98530158 GCTATATATGGCACTTAGTGTG-CGATTCGACATAGCTCCG
1 GCTATATATGGCACTTAGTGTGTGGATTCGACATAGCTCCG
* *
98530198 GCTATATATGGCACTTAGTGTGTGAGATTTGAGATAGCT
1 GCTATATATGGCACTTAGTGTGTG-GATTCGACATAGCT
98530237 TCCACTATGT
Statistics
Matches: 71, Mismatches: 5, Indels: 4
0.89 0.06 0.05
Matches are distributed among these distances:
40 59 0.83
42 12 0.17
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.34
Consensus pattern (41 bp):
GCTATATATGGCACTTAGTGTGTGGATTCGACATAGCTCCG
Found at i:98534397 original size:25 final size:25
Alignment explanation
Indices: 98534326--98534399 Score: 71
Period size: 25 Copynumber: 3.0 Consensus size: 25
98534316 AGTATTCTAC
**
98534326 ACTGT-GATAAGTTTAAACTGAAAAT
1 ACTGTAGAT-AGTTTACTCTGAAAAT
* *
98534351 ACTGTAGATAGTTTATTCTGAAACT
1 ACTGTAGATAGTTTACTCTGAAAAT
*
98534376 ACTGTA-AGTAGTTTACTGTGAAAA
1 ACTGTAGA-TAGTTTACTCTGAAAA
98534400 CAATGTAGGC
Statistics
Matches: 41, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
24 1 0.02
25 37 0.90
26 3 0.07
ACGTcount: A:0.38, C:0.09, G:0.18, T:0.35
Consensus pattern (25 bp):
ACTGTAGATAGTTTACTCTGAAAAT
Found at i:98544508 original size:27 final size:27
Alignment explanation
Indices: 98544457--98544567 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
98544447 AGCACAGCTG
*
98544457 CCAGAACAGATAA-TGTGACAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
98544483 CAAGAACAGATAATTGTGGTAGAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
* *
98544510 CCCGAACAGAT-ATATGTGGTAGAGCCA
1 CCAGAACAGATAAT-TGTGGCAGAGCCA
* * *
98544537 CCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATAATTGTGGCAGAGCCA
98544564 CCAG
1 CCAG
98544568 GACGCTTCCT
Statistics
Matches: 72, Mismatches: 10, Indels: 5
0.83 0.11 0.06
Matches are distributed among these distances:
26 14 0.19
27 57 0.79
28 1 0.01
ACGTcount: A:0.36, C:0.22, G:0.25, T:0.17
Consensus pattern (27 bp):
CCAGAACAGATAATTGTGGCAGAGCCA
Found at i:98544547 original size:54 final size:53
Alignment explanation
Indices: 98544460--98544565 Score: 140
Period size: 54 Copynumber: 2.0 Consensus size: 53
98544450 ACAGCTGCCA
*
98544460 GAACAGATAATGTGACAGAGCCACAAGAACAGATAATTGTGGTAGAGCCACCC
1 GAACAGATAATGTGACAGAGCCACAAGAACAGATAATTGTGGCAGAGCCACCC
** * * * *
98544513 GAACAGATATATGTGGTAGAGCCACCAGATCAGATAGTTGTGGCATAGCCACC
1 GAACAGATA-ATGTGACAGAGCCACAAGAACAGATAATTGTGGCAGAGCCACC
98544566 AGGACGCTTC
Statistics
Matches: 45, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
53 9 0.20
54 36 0.80
ACGTcount: A:0.36, C:0.21, G:0.25, T:0.18
Consensus pattern (53 bp):
GAACAGATAATGTGACAGAGCCACAAGAACAGATAATTGTGGCAGAGCCACCC
Found at i:98545997 original size:25 final size:25
Alignment explanation
Indices: 98545969--98546022 Score: 81
Period size: 25 Copynumber: 2.2 Consensus size: 25
98545959 AACTCTTGCT
98545969 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTTGATCAGCTCCTAAATCTTCTC
* * *
98545994 CCTTTATCAGCTCGTAAATCTTCTT
1 CCTTGATCAGCTCCTAAATCTTCTC
98546019 CCTT
1 CCTT
98546023 ATCTCCTCCT
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.19, C:0.33, G:0.07, T:0.41
Consensus pattern (25 bp):
CCTTGATCAGCTCCTAAATCTTCTC
Found at i:98550422 original size:150 final size:150
Alignment explanation
Indices: 98550151--98550450 Score: 591
Period size: 150 Copynumber: 2.0 Consensus size: 150
98550141 ATTTTTGGTG
*
98550151 GATAGGTGCTTGAATCAAACAAATGATCATGTGTGTACACTAGGTGCTAGTTGAGAAGAATCGGT
1 GATAGGTACTTGAATCAAACAAATGATCATGTGTGTACACTAGGTGCTAGTTGAGAAGAATCGGT
98550216 CACTATATTGGAGGCCATTGCCGAATATGAGTTTAGTTATTGAGTTGATGGAATAAAAGAATGCT
66 CACTATATTGGAGGCCATTGCCGAATATGAGTTTAGTTATTGAGTTGATGGAATAAAAGAATGCT
98550281 TAAAGATGTGTCACAACAAA
131 TAAAGATGTGTCACAACAAA
98550301 GATAGGTACTTGAATCAAACAAATGATCATGTGTGTACACTAGGTGCTAGTTGAGAAGAATCGGT
1 GATAGGTACTTGAATCAAACAAATGATCATGTGTGTACACTAGGTGCTAGTTGAGAAGAATCGGT
98550366 CACTATATTGGAGGCCATTGCCGAATATGAGTTTAGTTATTGAGTTGATGGAATAAAAGAATGCT
66 CACTATATTGGAGGCCATTGCCGAATATGAGTTTAGTTATTGAGTTGATGGAATAAAAGAATGCT
98550431 TAAAGATGTGTCACAACAAA
131 TAAAGATGTGTCACAACAAA
98550451 TTATATGTTA
Statistics
Matches: 149, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
150 149 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (150 bp):
GATAGGTACTTGAATCAAACAAATGATCATGTGTGTACACTAGGTGCTAGTTGAGAAGAATCGGT
CACTATATTGGAGGCCATTGCCGAATATGAGTTTAGTTATTGAGTTGATGGAATAAAAGAATGCT
TAAAGATGTGTCACAACAAA
Found at i:98551943 original size:55 final size:55
Alignment explanation
Indices: 98551877--98551988 Score: 206
Period size: 55 Copynumber: 2.0 Consensus size: 55
98551867 TGTTTTAGTT
98551877 ACTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCATGATATTGTAAA
1 ACTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCATGATATTGTAAA
* *
98551932 ACTCATAAGCTATTGATTAAACCCATACGTGAATTCTAACTCGTGATATTGTAAA
1 ACTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCATGATATTGTAAA
98551987 AC
1 AC
98551989 GATACATGAG
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 55 1.00
ACGTcount: A:0.38, C:0.18, G:0.12, T:0.32
Consensus pattern (55 bp):
ACTCATAAGCTATTGATTAAACCCATACGTGAATTCTAAATCATGATATTGTAAA
Found at i:98552233 original size:47 final size:47
Alignment explanation
Indices: 98552181--98552394 Score: 304
Period size: 47 Copynumber: 4.6 Consensus size: 47
98552171 GATAATTGTG
* *
98552181 ATGTGAATGTATATATATGTGATAAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
98552228 ATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
*
98552275 ATGTGAAAGTGTATATATGTGATGAGGCCTAATGGCCGATGTGATGA
1 ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
* * * * * * *
98552322 ATGTGAAAGTGTATATATGTGA-CAGAGCCGAGTGGCCAACGTGAGGG
1 ATGTGAAAGTGTATATATGTGATAAG-GCCTAATGGCCGATGTGATGA
*
98552369 ATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGAAAGTGTATATATGTGATAAG
98552395 TCCCGAAGGG
Statistics
Matches: 151, Mismatches: 14, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
46 2 0.01
47 147 0.97
48 2 0.01
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
ATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGA
Found at i:98553770 original size:111 final size:110
Alignment explanation
Indices: 98553565--98553779 Score: 324
Period size: 111 Copynumber: 1.9 Consensus size: 110
98553555 ATATATGTAT
* *
98553565 AGATTCCTCTTTGAGTCTAGTTTCTATAGAAACAAACGGCATCAGCATTGAAGCCCTGTACAGGG
1 AGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGCATTGAAGCCCTGTACAGGG
*
98553630 AGATATCCAAATCGTAATGCATGAAGGTCATTGTAGTCGCACGTAC
66 AGATATCCAAATCGTAATGCA-GAAGGTCAGTGTAGTCGCACGTAC
* * * *
98553676 AGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGTATTGAAGCTCTGTGCTGGG
1 AGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGCATTGAAGCCCTGTACAGGG
*
98553741 AGATATCCAATTCGTAATGC-GCAAGGGTCAGTGTAGTCG
66 AGATATCCAAATCGTAATGCAG-AA-GGTCAGTGTAGTCG
98553780 ATCCCTGTAA
Statistics
Matches: 94, Mismatches: 8, Indels: 4
0.89 0.08 0.04
Matches are distributed among these distances:
109 1 0.01
110 2 0.02
111 91 0.97
ACGTcount: A:0.29, C:0.20, G:0.23, T:0.28
Consensus pattern (110 bp):
AGATTCCTCTCTGAGTCTAGTTTCTATAGAAACAAACGACATCAGCATTGAAGCCCTGTACAGGG
AGATATCCAAATCGTAATGCAGAAGGTCAGTGTAGTCGCACGTAC
Found at i:98559871 original size:13 final size:13
Alignment explanation
Indices: 98559853--98559877 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
98559843 TAATGGTATA
98559853 TTGAATCCATGAC
1 TTGAATCCATGAC
98559866 TTGAATCCATGA
1 TTGAATCCATGA
98559878 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:98560458 original size:27 final size:27
Alignment explanation
Indices: 98560427--98560604 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
98560417 TAAATTGTAC
98560427 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
98560454 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98560480 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
98560508 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
98560536 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
98560563 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
98560590 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
98560605 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:98560541 original size:82 final size:81
Alignment explanation
Indices: 98560428--98560583 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
98560418 AAATTGTACA
* *
98560428 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
98560492 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
98560509 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
98560574 TGCGAGTTGA
65 TGCGAATTGA
98560584 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:98560595 original size:82 final size:81
Alignment explanation
Indices: 98560424--98560604 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
98560414 GATTAAATTG
* *
98560424 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
98560489 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
98560505 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
98560569 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
98560587 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
98560605 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:98560615 original size:27 final size:27
Alignment explanation
Indices: 98560509--98560615 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
98560499 TGACCATGCG
* * * *
98560509 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
98560537 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
98560564 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
98560591 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
98560616 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:98564364 original size:27 final size:26
Alignment explanation
Indices: 98564334--98564445 Score: 107
Period size: 27 Copynumber: 4.2 Consensus size: 26
98564324 AGCACAACTG
*
98564334 CCAGAACAGATAACTGTGACAGAGTCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
*
98564361 CCAGAATAGATAATTGTGACAGAGCCA
1 CCAGAACAGATAA-TGTGACAGAGCCA
* **
98564388 CCAGAACAAATATATGTGGTAGAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
* * * *
98564415 CCAGATCAGATAGTTGTGGCATAGCCA
1 CCAGAACAGATA-ATGTGACAGAGCCA
98564442 CCAG
1 CCAG
98564446 GAGGCTTCCT
Statistics
Matches: 71, Mismatches: 13, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
27 70 0.99
28 1 0.01
ACGTcount: A:0.38, C:0.21, G:0.23, T:0.18
Consensus pattern (26 bp):
CCAGAACAGATAATGTGACAGAGCCA
Found at i:98564879 original size:15 final size:15
Alignment explanation
Indices: 98564859--98564889 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
98564849 TAAAAATGTC
98564859 GGCTTTTCGACTTTT
1 GGCTTTTCGACTTTT
98564874 GGCTTTTCGACTTTT
1 GGCTTTTCGACTTTT
98564889 G
1 G
98564890 CCGATCTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.06, C:0.19, G:0.23, T:0.52
Consensus pattern (15 bp):
GGCTTTTCGACTTTT
Found at i:98565880 original size:24 final size:24
Alignment explanation
Indices: 98565848--98565903 Score: 94
Period size: 24 Copynumber: 2.3 Consensus size: 24
98565838 AACTCTTGCT
98565848 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTT-ATCAGCTCCTAAATCTTCTC
*
98565873 CCTTATCATCTCCTAAATCTTCTC
1 CCTTATCAGCTCCTAAATCTTCTC
98565897 CCTTATC
1 CCTTATC
98565904 CCCTCCTTAC
Statistics
Matches: 30, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
24 26 0.87
25 4 0.13
ACGTcount: A:0.20, C:0.38, G:0.04, T:0.39
Consensus pattern (24 bp):
CCTTATCAGCTCCTAAATCTTCTC
Found at i:98565909 original size:24 final size:24
Alignment explanation
Indices: 98565848--98565910 Score: 90
Period size: 24 Copynumber: 2.6 Consensus size: 24
98565838 AACTCTTGCT
*
98565848 CCTTGATCAGCTCCTAAATCTTCTC
1 CCTT-ATCACCTCCTAAATCTTCTC
*
98565873 CCTTATCATCTCCTAAATCTTCTC
1 CCTTATCACCTCCTAAATCTTCTC
*
98565897 CCTTATCCCCTCCT
1 CCTTATCACCTCCT
98565911 TACTCAATCA
Statistics
Matches: 35, Mismatches: 3, Indels: 1
0.90 0.08 0.03
Matches are distributed among these distances:
24 31 0.89
25 4 0.11
ACGTcount: A:0.17, C:0.41, G:0.03, T:0.38
Consensus pattern (24 bp):
CCTTATCACCTCCTAAATCTTCTC
Found at i:98568036 original size:27 final size:27
Alignment explanation
Indices: 98567986--98568129 Score: 125
Period size: 27 Copynumber: 5.3 Consensus size: 27
98567976 CCCCCAGTTA
*
98567986 TAAAATTA-CCAAAGTACCCCCGATTTC
1 TAAAATTACCCAAA-TACCCTCGATTTC
* *
98568013 TAAAATTACCCAAATATCCTCGATTTG
1 TAAAATTACCCAAATACCCTCGATTTC
*
98568040 TAAAATTACCGAAATACCCTC-AGTTTGC
1 TAAAATTACCCAAATACCCTCGA-TTT-C
** * *
98568068 -AAAATTACTGAAATACCCTCGACTTG
1 TAAAATTACCCAAATACCCTCGATTTC
* * *
98568094 TAAAATTA-TCAAAGTACCCTCGAATTA
1 TAAAATTACCCAAA-TACCCTCGATTTC
98568121 TAAAATTAC
1 TAAAATTAC
98568130 TGTTTTACCC
Statistics
Matches: 98, Mismatches: 12, Indels: 13
0.80 0.10 0.11
Matches are distributed among these distances:
26 5 0.05
27 87 0.89
28 6 0.06
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (27 bp):
TAAAATTACCCAAATACCCTCGATTTC
Found at i:98568101 original size:81 final size:80
Alignment explanation
Indices: 98567962--98568129 Score: 189
Period size: 81 Copynumber: 2.1 Consensus size: 80
98567952 TTAGTTTACC
* *
98567962 AAATTACTGAAATACCCCCAGTTATAAAATTACCAAAGTACCCCCGATTTCTAAAATTACCCAAA
1 AAATTACCGAAATACCCCCAGTTATAAAATTACCAAAGTACCCCCGACTTCTAAAATTA-CCAAA
* * *
98568027 -TATCCTCGATTTGTA
65 GTACCCTCGAATTATA
* * * * *
98568042 AAATTACCGAAATACCCTCAGTT-TGCAAAATTACTGAAA-TACCCTCGACTTGTAAAATTATCA
1 AAATTACCGAAATACCCCCAGTTAT--AAAATTAC-CAAAGTACCCCCGACTTCTAAAATTACCA
98568105 AAGTACCCTCGAATTATA
63 AAGTACCCTCGAATTATA
98568123 AAATTAC
1 AAATTAC
98568130 TGTTTTACCC
Statistics
Matches: 74, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
79 1 0.01
80 25 0.34
81 45 0.61
82 3 0.04
ACGTcount: A:0.40, C:0.23, G:0.08, T:0.29
Consensus pattern (80 bp):
AAATTACCGAAATACCCCCAGTTATAAAATTACCAAAGTACCCCCGACTTCTAAAATTACCAAAG
TACCCTCGAATTATA
Found at i:98568130 original size:54 final size:53
Alignment explanation
Indices: 98567962--98568131 Score: 175
Period size: 54 Copynumber: 3.2 Consensus size: 53
98567952 TTAGTTTACC
* * * * *
98567962 AAATTACTGAAATACCC-CCAGTTATAAAATTACCAAAGTACCCCCGATTTCTA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGAATT-TA
** * * *
98568015 AAATTACCCAAATATCCTCGATTTGTAAAATTACCGAAA-TACCCTC-AGTTTGCA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACC-AAAGTACCCTCGAATTT--A
*
98568069 AAATTACTGAAATACCCTCGACTTGTAAAATTATCAAAGTACCCTCGAATTATA
1 AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGAATT-TA
98568123 AAATTACTG
1 AAATTACTG
98568132 TTTTACCCTC
Statistics
Matches: 96, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
52 1 0.01
53 20 0.21
54 68 0.71
55 6 0.06
56 1 0.01
ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29
Consensus pattern (53 bp):
AAATTACTGAAATACCCTCGACTTGTAAAATTACCAAAGTACCCTCGAATTTA
Found at i:98568138 original size:27 final size:27
Alignment explanation
Indices: 98568108--98568595 Score: 606
Period size: 27 Copynumber: 18.2 Consensus size: 27
98568098 ATTATCAAAG
* * *
98568108 TACCCTCGAATTATAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
98568135 TACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAAAATTACTATTT
*
98568162 TACCTTCGATTTACAAAATTAC-AGTTT
1 TACCCTCGATTTACAAAATTACTA-TTT
*
98568189 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
98568216 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
98568243 TACCCTCGATTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * **
98568270 TACCCTCGATTGACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * *
98568297 TACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
98568324 TACCCTCGATTTACAGAATTACTGTTT
1 TACCCTCGATTTACAAAATTACTATTT
98568351 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* **
98568378 TACCCTCGATTTAC-AGA--ACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
*
98568402 TACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
98568429 TACCCTCAATTTACAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * *
98568456 TACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
98568483 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
98568510 TACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAAAATTACTATTT
* * * **
98568537 TAACCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACTATTT
* *
98568564 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACTATTT
98568591 TACCC
1 TACCC
98568596 CTAGGGTGTT
Statistics
Matches: 410, Mismatches: 46, Indels: 10
0.88 0.10 0.02
Matches are distributed among these distances:
24 18 0.04
25 2 0.00
26 3 0.01
27 386 0.94
28 1 0.00
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACTATTT
Found at i:98568139 original size:54 final size:52
Alignment explanation
Indices: 98567986--98568587 Score: 379
Period size: 54 Copynumber: 11.2 Consensus size: 52
98567976 CCCCCAGTTA
* * ***** *
98567986 TAAAATTACCAAAGTACCCCCGATTT-CTAAAATTACCCAAATATCCTCGATTT
1 TAAAATTACCAAATTACCCTCGATTTAC-AAAATTACTGTTTTACCCTCGA-TT
* ***
98568039 GTAAAATTACCGAAA-TACCCTC-AGTTTGCAAAATTACTGAAATACCCTCGACTT
1 -TAAAATTACC-AAATTACCCTCGA-TTTACAAAATTACTGTTTTACCCTCGA-TT
* * * *
98568093 GTAAAATTATCAAAGTACCCTCGAATTATAAAATTACTGTTTTACCCTCGATT
1 -TAAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
** ** * *
98568146 TACAGAATTATTATTTTACCTTCGATTTACAAAATTACAGTTTTACCCTCGATT
1 TA-A-AATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
** *
98568200 TACAAAATTACCATTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 T--AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
**** * * *
98568254 TAAAAAATTACTGTTTTACCCTCGATTGACAGAATTACCGTTTTACCCTCGATT
1 T--AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
* **** *
98568308 GATAGAATTACTGTTTTACCCTCGATTTACAGAATTACTGTTTTACCCTCGATT
1 --TAAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
* ** * * *
98568362 TACAAAATTACTATTTTACCCTCGATTTAC-AGA--ACCGTTTTACCCTCAATT
1 T--AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
* ** * * *
98568413 TACAAAATTACTATTTTACCCTCAATTTACAGAATTACTATTTTACCCTCGATT
1 T--AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
* * ** *
98568467 GATAGAATTACTATTTTACCCTCGATTTACAAAATTACTATTTTACCCTCGATT
1 --TAAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
* ** * * * *
98568521 TACAAAATTACTATTTTAACCTCGATTTATAGAATTACCGTTTTACCCTCGATTT
1 T--AAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGA-TT
98568576 ATAAAATTACCA
1 -TAAAATTACCA
98568588 TTTTACCCCT
Statistics
Matches: 471, Mismatches: 55, Indels: 44
0.83 0.10 0.08
Matches are distributed among these distances:
51 45 0.10
52 5 0.01
53 8 0.02
54 401 0.85
55 8 0.02
56 4 0.01
ACGTcount: A:0.33, C:0.22, G:0.08, T:0.37
Consensus pattern (52 bp):
TAAAATTACCAAATTACCCTCGATTTACAAAATTACTGTTTTACCCTCGATT
Found at i:98568591 original size:54 final size:54
Alignment explanation
Indices: 98568108--98568595 Score: 676
Period size: 54 Copynumber: 9.1 Consensus size: 54
98568098 ATTATCAAAG
* * * * *
98568108 TACCCTCGAATTATAAAATTACTGTTTTACCCTCGATTTACAGAATTATTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* * * *
98568162 TACCTTCGATTTACAAAATTACAGTTTTACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* *
98568216 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTAAAAAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* * * * * *
98568270 TACCCTCGATTGACAGAATTACCGTTTTACCCTCGATTGATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
98568324 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* *
98568378 TACCCTCGATTTACAG-A--ACCGTTTTACCCTCAATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* * * * *
98568429 TACCCTCAATTTACAGAATTACTATTTTACCCTCGATTGATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* *
98568483 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
* * * * *
98568537 TAACCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
98568591 TACCC
1 TACCC
98568596 CTAGGGTGTT
Statistics
Matches: 385, Mismatches: 46, Indels: 6
0.88 0.11 0.01
Matches are distributed among these distances:
51 47 0.12
52 1 0.00
53 1 0.00
54 336 0.87
ACGTcount: A:0.31, C:0.22, G:0.08, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACTGTTTTACCCTCGATTTACAAAATTACTATTT
Found at i:98568876 original size:27 final size:26
Alignment explanation
Indices: 98568832--98568883 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
98568822 CTCGCTGCAA
*
98568832 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
98568859 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
98568884 GTAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:98569130 original size:6 final size:6
Alignment explanation
Indices: 98569101--98569169 Score: 61
Period size: 6 Copynumber: 11.2 Consensus size: 6
98569091 GCATTCACAG
* *
98569101 TCTGAT TTTGAT TCTG-T TACCTGAT ACTGAT TCTGAT TCTGAT TCTG-T
1 TCTGAT TCTGAT TCTGAT T--CTGAT TCTGAT TCTGAT TCTGAT TCTGAT
*
98569149 CACCTGAT TCTGAT TCTGAT T
1 --TCTGAT TCTGAT TCTGAT T
98569170 ATAGTTCTGA
Statistics
Matches: 51, Mismatches: 6, Indels: 12
0.74 0.09 0.17
Matches are distributed among these distances:
5 3 0.06
6 40 0.78
7 6 0.12
8 2 0.04
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (6 bp):
TCTGAT
Found at i:98569144 original size:31 final size:31
Alignment explanation
Indices: 98569101--98569169 Score: 111
Period size: 31 Copynumber: 2.2 Consensus size: 31
98569091 GCATTCACAG
* *
98569101 TCTGATTTTGATTCTGTTACCTGATACTGAT
1 TCTGATTCTGATTCTGTCACCTGATACTGAT
*
98569132 TCTGATTCTGATTCTGTCACCTGATTCTGAT
1 TCTGATTCTGATTCTGTCACCTGATACTGAT
98569163 TCTGATT
1 TCTGATT
98569170 ATAGTTCTGA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
31 35 1.00
ACGTcount: A:0.17, C:0.19, G:0.16, T:0.48
Consensus pattern (31 bp):
TCTGATTCTGATTCTGTCACCTGATACTGAT
Found at i:98576015 original size:27 final size:27
Alignment explanation
Indices: 98575945--98576022 Score: 102
Period size: 27 Copynumber: 2.9 Consensus size: 27
98575935 AAATCACCAA
* * *
98575945 AATACCCTTGTAGTGCAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
*
98575972 AATGCCCCTGTAGGGTAAAATGACCGT
1 AATACCCCTGTAGGGTAAAATGACCGT
* *
98575999 AATACCCCTGTATGGTAGAATGAC
1 AATACCCCTGTAGGGTAAAATGAC
98576023 GATTATGCCC
Statistics
Matches: 44, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 44 1.00
ACGTcount: A:0.32, C:0.22, G:0.22, T:0.24
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAATGACCGT
Found at i:98576310 original size:22 final size:22
Alignment explanation
Indices: 98576271--98576342 Score: 81
Period size: 22 Copynumber: 3.3 Consensus size: 22
98576261 CCTTTAGATG
* * * *
98576271 TCCTGTCTATGACTTTGAGTCA
1 TCCTGTCTACGGCATTGAGCCA
*
98576293 TCCTGTCTACGGCATTGAGCCG
1 TCCTGTCTACGGCATTGAGCCA
* *
98576315 TCCTATCTACGGCGTTGAGCCA
1 TCCTGTCTACGGCATTGAGCCA
98576337 TCCTGT
1 TCCTGT
98576343 TGACTTAGTG
Statistics
Matches: 41, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 41 1.00
ACGTcount: A:0.15, C:0.29, G:0.22, T:0.33
Consensus pattern (22 bp):
TCCTGTCTACGGCATTGAGCCA
Found at i:98576514 original size:27 final size:27
Alignment explanation
Indices: 98576484--98576535 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
98576474 CATCTGCTAT
*
98576484 TGATTCTG-TACTGGGCTTAGGCCCACC
1 TGATTCTGTTAATGGGC-TAGGCCCACC
98576511 TGATTCTGTTAATGGGCTAGGCCCA
1 TGATTCTGTTAATGGGCTAGGCCCA
98576536 ACTGTTACTA
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 16 0.70
28 7 0.30
ACGTcount: A:0.17, C:0.25, G:0.27, T:0.31
Consensus pattern (27 bp):
TGATTCTGTTAATGGGCTAGGCCCACC
Found at i:98577815 original size:56 final size:56
Alignment explanation
Indices: 98577727--98577944 Score: 337
Period size: 56 Copynumber: 3.9 Consensus size: 56
98577717 GGCATCCATG
* *
98577727 TATGTGTGTGAGTAAGACCACGTTTAATACGTTGGCATTGATATGTGATTCCGATA
1 TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATA
*
98577783 TATGTGTGCGAGTAAGACCACGTTTAACACGTTGGCATCGATATGTGATTCCGATA
1 TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATA
** * * *
98577839 TATGTGTGCGAGTAAGAAAATGTTTAATACGTTGGCATCGATATGTGATTTCGATG
1 TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATA
* * *
98577895 TATGTGAGCGACTAAGACCACGTTTAATACATTGGCATCGATATGTGATT
1 TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATT
98577945 ACATGTAAGA
Statistics
Matches: 147, Mismatches: 15, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 147 1.00
ACGTcount: A:0.28, C:0.14, G:0.25, T:0.33
Consensus pattern (56 bp):
TATGTGTGCGAGTAAGACCACGTTTAATACGTTGGCATCGATATGTGATTCCGATA
Found at i:98586803 original size:17 final size:17
Alignment explanation
Indices: 98586783--98586826 Score: 65
Period size: 16 Copynumber: 2.6 Consensus size: 17
98586773 AAATTAAACT
98586783 AAAATAAAGAATAAAAG
1 AAAATAAAGAATAAAAG
98586800 AAAATAACAG--TAAAAG
1 AAAATAA-AGAATAAAAG
98586816 AAAATAAAGAA
1 AAAATAAAGAA
98586827 AAGCAGCGGC
Statistics
Matches: 24, Mismatches: 0, Indels: 6
0.80 0.00 0.20
Matches are distributed among these distances:
15 2 0.08
16 13 0.54
17 7 0.29
18 2 0.08
ACGTcount: A:0.75, C:0.02, G:0.11, T:0.11
Consensus pattern (17 bp):
AAAATAAAGAATAAAAG
Found at i:98603928 original size:23 final size:23
Alignment explanation
Indices: 98603898--98603942 Score: 81
Period size: 23 Copynumber: 2.0 Consensus size: 23
98603888 ATGGTAAGCT
98603898 TTGTTCCTAATTTACGAACTTAA
1 TTGTTCCTAATTTACGAACTTAA
*
98603921 TTGTTCCTGATTTACGAACTTA
1 TTGTTCCTAATTTACGAACTTA
98603943 CTAAGCATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.27, C:0.18, G:0.11, T:0.44
Consensus pattern (23 bp):
TTGTTCCTAATTTACGAACTTAA
Found at i:98606697 original size:12 final size:12
Alignment explanation
Indices: 98606655--98606698 Score: 52
Period size: 12 Copynumber: 3.7 Consensus size: 12
98606645 AAGGACACAT
*
98606655 GGCCGTGTCCTA
1 GGCCGTGTGCTA
* *
98606667 GCCCGTATGCTA
1 GGCCGTGTGCTA
*
98606679 AGCCGTGTGCTA
1 GGCCGTGTGCTA
98606691 GGCCGTGT
1 GGCCGTGT
98606699 AACTACTTGA
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
12 25 1.00
ACGTcount: A:0.11, C:0.30, G:0.34, T:0.25
Consensus pattern (12 bp):
GGCCGTGTGCTA
Found at i:98607448 original size:41 final size:41
Alignment explanation
Indices: 98607346--98607839 Score: 360
Period size: 41 Copynumber: 12.1 Consensus size: 41
98607336 AGTTTATTCG
* * * * * *
98607346 ATTCAGGGTTACCGAATGTATAAATA-GGGCATGTAAGTTCT
1 ATTCAGGGGTACC-AAAGTACAAATAGGGGCATGTATGTGCA
* *
98607387 ATT-TGGGGTACC-ATGATACAAATAGGGGCATGTATGTGCA
1 ATTCAGGGGTACCAAAG-TACAAATAGGGGCATGTATGTGCA
* * * * *
98607427 ATTCAGAGGTACCGAAGTACAAAAAGAGGCATGTATGTTCA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
* * * * * *
98607468 ATTTAGGGGTATCAAAGTACAAACAAGGGCACGCATGTGCA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
* ** *
98607509 ATTTA-GGGTATTGAAA-TACAAAGAGGGGCATGTATGTGCA
1 ATTCAGGGGTA-CCAAAGTACAAATAGGGGCATGTATGTGCA
* * * * * **
98607549 ATCCAGGAGTACCAAAATACAAACAGGGGTACATATGTGCA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
* * * *
98607590 ATTCAGGGGTACCGAAGTACAAAGAGGGGCACGTACGTGCA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
* * *
98607631 ATTTAGGGGTACGAAAGTACAAAGAGGGGCACT-TATGTGCA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCA-TGTATGTGCA
* * * * * * **
98607672 TTTTAGAGGTATCAAATTAAAAATAGGGGCACATATGTGCA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
* **
98607713 ACTT-AGGGGGTACCAAAGTACAAACAGGGGCATACATGTGCA
1 A-TTCA-GGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
* * *
98607755 ATCCAGGGGTACCAAAGTACAAATAGGGG-ATGCATGTGTA
1 ATTCAGGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
* * * *
98607795 ATTTAGGGGTATCGAAG-AGC-AATAGGGGCATGTATATGCA
1 ATTCAGGGGTACCAAAGTA-CAAATAGGGGCATGTATGTGCA
98607835 ATTCA
1 ATTCA
98607840 AGGTATAATT
Statistics
Matches: 362, Mismatches: 77, Indels: 29
0.77 0.16 0.06
Matches are distributed among these distances:
38 3 0.01
39 16 0.04
40 88 0.24
41 220 0.61
42 35 0.10
ACGTcount: A:0.35, C:0.14, G:0.28, T:0.23
Consensus pattern (41 bp):
ATTCAGGGGTACCAAAGTACAAATAGGGGCATGTATGTGCA
Found at i:98607588 original size:163 final size:165
Alignment explanation
Indices: 98607402--98607810 Score: 463
Period size: 163 Copynumber: 2.5 Consensus size: 165
98607392 GGGTACCATG
* ** *
98607402 ATACAAATAGGGGCATGTATGTGCAATTCAGAGGTACCGAAGTACAAAAAGAGGCATGTATGTTC
1 ATACAAACAGGGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAAAAG-GGCATGTATGTTC
* *
98607467 AATTTAGGGGTATC-AAAGTACAAACAAGGGCACGCATGTGCAATTTAG-GGTATTGAAA-TACA
65 AATTTAGGGGTATCGAAAGTACAAACAAGGGCACGCATGTGCAATTTAGAGGTA-TCAAATTAAA
**
98607529 AAGAGGGGCATGTATGTGCAA-TCCA-GGAGTACCAAA
129 AAGAGGGGCACATATGTGCAACT-CAGGGAGTACCAAA
* * * * *
98607565 ATACAAACAGGGGTACATATGTGCAATTCAGGGGTACCGAAGTACAAAGAGGGGCACGTACGTGC
1 ATACAAACAGGGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAA-AAGGGCATGTATGTTC
* * ** *
98607630 AATTTAGGGGTA-CGAAAGTACAAAGAGGGGCACTTATGTGCATTTTAGAGGTATCAAATTAAAA
65 AATTTAGGGGTATCGAAAGTACAAACAAGGGCACGCATGTGCAATTTAGAGGTATCAAATTAAAA
* * *
98607694 ATAGGGGCACATATGTGCAACTTAGGGGGTACCAAA
130 AGAGGGGCACATATGTGCAACTCAGGGAGTACCAAA
* * * * * * * *
98607730 GTACAAACAGGGGCATACATGTGCAATCCAGGGGTACCAAAGTACAAATAGGGGATGCATGTGT-
1 ATACAAACAGGGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAAAAGGGCATGTATGT-TC
98607794 AATTTAGGGGTATCGAA
65 AATTTAGGGGTATCGAA
98607811 GAGCAATAGG
Statistics
Matches: 204, Mismatches: 34, Indels: 14
0.81 0.13 0.06
Matches are distributed among these distances:
162 1 0.00
163 98 0.48
164 48 0.24
165 57 0.28
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (165 bp):
ATACAAACAGGGGCACATATGTGCAATTCAGGGGTACCGAAGTACAAAAAGGGCATGTATGTTCA
ATTTAGGGGTATCGAAAGTACAAACAAGGGCACGCATGTGCAATTTAGAGGTATCAAATTAAAAA
GAGGGGCACATATGTGCAACTCAGGGAGTACCAAA
Found at i:98607592 original size:122 final size:122
Alignment explanation
Indices: 98607402--98607797 Score: 415
Period size: 122 Copynumber: 3.2 Consensus size: 122
98607392 GGGTACCATG
* * * * ** *
98607402 ATACAAATAGGGGCATGTATGTGCAATTCAGAGGTACCGAAGTACAAAAAGAGGCATGTATGTTC
1 ATACAAAGAGGGGCATGTATGTGCAATTCAGAGGTACCAAAATACAAAAAGGGGCACATATGTGC
* * *
98607467 AATTTAGGGGTATCAAAGTACAAACAAGGGCACGCATGTGCAATTTA-GGGTATTGAA
66 AATTTAGGGGTACCAAAGTACAAACAGGGGCACGCATGTGCAATTTAGGGGTA-CGAA
* * *
98607524 ATACAAAGAGGGGCATGTATGTGCAATCCAG-GAGTACCAAAATACAAACAGGGGTACATATGTG
1 ATACAAAGAGGGGCATGTATGTGCAATTCAGAG-GTACCAAAATACAAAAAGGGGCACATATGTG
* * * * *
98607588 CAATTCAGGGGTACCGAAGTACAAAGAGGGGCACGTACGTGCAATTTAGGGGTACGAA
65 CAATTTAGGGGTACCAAAGTACAAACAGGGGCACGCATGTGCAATTTAGGGGTACGAA
* * * *
98607646 AGTACAAAGAGGGGCACT-TATGTGCATTTTAGAGGTATCAAATTA-AAAATAGGGGCACATATG
1 A-TACAAAGAGGGGCA-TGTATGTGCAATTCAGAGGTACCAAAATACAAAA-AGGGGCACATATG
* ** ** *
98607709 TGCAACTTAGGGGGTACCAAAGTACAAACAGGGGCATACATGTGCAATCCAGGGGTACCAA
63 TGCAATTTA-GGGGTACCAAAGTACAAACAGGGGCACGCATGTGCAATTTAGGGGTACGAA
* * *
98607770 AGTACAAATAGGGG-ATGCATGTGTAATT
1 A-TACAAAGAGGGGCATGTATGTGCAATT
98607798 TAGGGGTATC
Statistics
Matches: 226, Mismatches: 40, Indels: 15
0.80 0.14 0.05
Matches are distributed among these distances:
121 1 0.00
122 101 0.45
123 67 0.30
124 57 0.25
ACGTcount: A:0.36, C:0.15, G:0.28, T:0.21
Consensus pattern (122 bp):
ATACAAAGAGGGGCATGTATGTGCAATTCAGAGGTACCAAAATACAAAAAGGGGCACATATGTGC
AATTTAGGGGTACCAAAGTACAAACAGGGGCACGCATGTGCAATTTAGGGGTACGAA
Found at i:98607832 original size:124 final size:122
Alignment explanation
Indices: 98607460--98607839 Score: 285
Period size: 122 Copynumber: 3.1 Consensus size: 122
98607450 AAGAGGCATG
* * * * * * ** **
98607460 TATGTTCAATTTAGGGGTATCAAAGTACAAACAAGGGCACGCATGTGCAATTTA-GGGTATTGAA
1 TATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGCAC-TACGTGCAATCCAGGGGTA-CCAA
* ** * * * *
98607524 A-TACAAAGAGGGGCA-TGTATGTGCAATCCAG-GAGTACCAAAAT-ACAAACAGGGGTACA
64 AGTACAAAGAGGGGCACT-CATGTGCAATTTAGAG-GTATC-AAATGAAAAATAGGGGCACA
* * ** *
98607582 TATGTGCAATTCAGGGGTACCGAAGTACAAAGAGGGGCACGTACGTGCAATTTAGGGGTACGAAA
1 TATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGCAC-TACGTGCAATCCAGGGGTACCAAA
* * *
98607647 GTACAAAGAGGGGCACTTATGTGCATTTTAGAGGTATCAAATTAAAAATAGGGGCACA
65 GTACAAAGAGGGGCACTCATGTGCAATTTAGAGGTATCAAATGAAAAATAGGGGCACA
98607705 TATGTGCAACTT-AGGGGGTACCAAAGTACAAACAGGGGCA-TACATGTGCAATCCAGGGGTACC
1 TATGTGCAA-TTCA-GGGGTACCAAAGTACAAACAGGGGCACTAC--GTGCAATCCAGGGGTACC
* * * * ** **
98607768 AAAGTACAAATAGGGG-A-TGCATGTGTAATTTAGGGGTATCGAA-GAGCAATAGGGGCATG
62 AAAGTACAAAGAGGGGCACT-CATGTGCAATTTAGAGGTATCAAATGAAAAATAGGGGCACA
*
98607827 TATATGCAATTCA
1 TATGTGCAATTCA
98607840 AGGTATAATT
Statistics
Matches: 214, Mismatches: 33, Indels: 22
0.80 0.12 0.08
Matches are distributed among these distances:
121 2 0.01
122 78 0.36
123 76 0.36
124 58 0.27
ACGTcount: A:0.36, C:0.14, G:0.28, T:0.22
Consensus pattern (122 bp):
TATGTGCAATTCAGGGGTACCAAAGTACAAACAGGGGCACTACGTGCAATCCAGGGGTACCAAAG
TACAAAGAGGGGCACTCATGTGCAATTTAGAGGTATCAAATGAAAAATAGGGGCACA
Found at i:98619990 original size:34 final size:34
Alignment explanation
Indices: 98619947--98620015 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
98619937 TATCAGCAAT
* *
98619947 AGGGTAAATAATTTCATCATCAAGCCATTTTATA
1 AGGGTAAATAATTCCAGCATCAAGCCATTTTATA
98619981 AGGGTAAATAATTCCAGCATCAAGCCATTTTATA
1 AGGGTAAATAATTCCAGCATCAAGCCATTTTATA
98620015 A
1 A
98620016 TTTCTTTCTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.13, T:0.32
Consensus pattern (34 bp):
AGGGTAAATAATTCCAGCATCAAGCCATTTTATA
Found at i:98624983 original size:27 final size:27
Alignment explanation
Indices: 98624918--98624994 Score: 91
Period size: 27 Copynumber: 2.9 Consensus size: 27
98624908 AAATTACCAA
*
98624918 AATACCCTTGTAGTGTAAAATGACCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
** *
98624945 AACGCTCTTGTAGGGTAAAATGACCGT
1 AATACCCTTGTAGGGTAAAATGACCGT
* * *
98624972 AATACCCCTGTATGGTAGAATGA
1 AATACCCTTGTAGGGTAAAATGA
98624995 TGATTATGCT
Statistics
Matches: 40, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
27 40 1.00
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.27
Consensus pattern (27 bp):
AATACCCTTGTAGGGTAAAATGACCGT
Found at i:98626335 original size:48 final size:51
Alignment explanation
Indices: 98626275--98626423 Score: 162
Period size: 48 Copynumber: 2.9 Consensus size: 51
98626265 GAGGCGATGG
* **
98626275 TGGATTGTAAAATTATTGAAATACCCCCAGTTTGTAAAATTAC-CGA-A-C
1 TGGATTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACAAAACACC
* * * *
98626323 TGGTTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACTAAAACACTCC
1 TGGATTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTAC-AAAACA--CC
*
98626377 TGGATTGTAAAATTATCGAAATA-CCCCAATTTGTAAAATTACTAAAA
1 TGGATTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTAC-AAAA
98626424 TACCCTTAGT
Statistics
Matches: 83, Mismatches: 12, Indels: 7
0.81 0.12 0.07
Matches are distributed among these distances:
48 38 0.46
50 1 0.01
51 1 0.01
53 23 0.28
54 20 0.24
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.32
Consensus pattern (51 bp):
TGGATTGTAAAATTATTGAAATACCCCCAATTTGTAAAATTACAAAACACC
Found at i:98626358 original size:27 final size:27
Alignment explanation
Indices: 98626326--98626450 Score: 148
Period size: 27 Copynumber: 4.6 Consensus size: 27
98626316 ACCGAACTGG
98626326 TTTGTAAAATTACTAAAATACCCCTAA
1 TTTGTAAAATTACTAAAATACCCCTAA
* * *
98626353 TTTGTAAAATTACTAAAACACTCCTGGA
1 TTTGTAAAATTACTAAAATACCCCT-AA
*
98626381 -TTGTAAAATTA-TCGAAATACCCC-AA
1 TTTGTAAAATTACT-AAAATACCCCTAA
* *
98626406 TTTGTAAAATTACTAAAATACCCTTAG
1 TTTGTAAAATTACTAAAATACCCCTAA
98626433 TTTGTAAAATTACCTAAA
1 TTTGTAAAATTA-CTAAA
98626451 TTCCCTTGGT
Statistics
Matches: 82, Mismatches: 10, Indels: 11
0.80 0.10 0.11
Matches are distributed among these distances:
25 1 0.01
26 20 0.24
27 55 0.67
28 6 0.07
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.34
Consensus pattern (27 bp):
TTTGTAAAATTACTAAAATACCCCTAA
Found at i:98626423 original size:53 final size:54
Alignment explanation
Indices: 98626322--98626450 Score: 165
Period size: 53 Copynumber: 2.4 Consensus size: 54
98626312 AATTACCGAA
*
98626322 CTGGTTTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACTAAAACACTC
1 CTGGATTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACTAAAACACTC
* *
98626376 CTGGATTGTAAAATTA-TCGAAATACCCC-AATTTGTAAAATTACTAAAATAC-C
1 CTGGATTGTAAAATTACT-AAAATACCCCTAATTTGTAAAATTACTAAAACACTC
* *
98626428 CTTAGTTTGTAAAATTACCTAAA
1 C-TGGATTGTAAAATTA-CTAAA
98626451 TTCCCTTGGT
Statistics
Matches: 65, Mismatches: 6, Indels: 8
0.82 0.08 0.10
Matches are distributed among these distances:
52 2 0.03
53 36 0.55
54 26 0.40
55 1 0.02
ACGTcount: A:0.41, C:0.17, G:0.09, T:0.33
Consensus pattern (54 bp):
CTGGATTGTAAAATTACTAAAATACCCCTAATTTGTAAAATTACTAAAACACTC
Found at i:98627124 original size:22 final size:22
Alignment explanation
Indices: 98627077--98627124 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 22
98627067 CAGCCTTGTG
* * *
98627077 CCATCCTGATTATGGCTCTGTG
1 CCATCCTGATTATGGATCTATA
98627099 CCATCCTGATTATGGAT-TATAA
1 CCATCCTGATTATGGATCTAT-A
98627121 CCAT
1 CCAT
98627125 TTTGTTTATG
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
21 2 0.09
22 20 0.91
ACGTcount: A:0.23, C:0.25, G:0.17, T:0.35
Consensus pattern (22 bp):
CCATCCTGATTATGGATCTATA
Found at i:98629682 original size:2 final size:2
Alignment explanation
Indices: 98629675--98629699 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
98629665 ATCGAATCAA
98629675 TC TC TC TC TC TC TC TC TC TC TC TC T
1 TC TC TC TC TC TC TC TC TC TC TC TC T
98629700 ATTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.00, C:0.48, G:0.00, T:0.52
Consensus pattern (2 bp):
TC
Found at i:98630892 original size:27 final size:27
Alignment explanation
Indices: 98630856--98631101 Score: 237
Period size: 27 Copynumber: 9.1 Consensus size: 27
98630846 GTCATTAAGA
*
98630856 CCCCAGTTTGTAAAATTACTAAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
* **
98630883 CCCCTGTTTGTAAAATTACCAAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
98630910 CCCCAGTTTGTAAAATTA-TCGAAATAC
1 CCCCAGTTTGTAAAATTACT-GAAATAC
* *
98630937 CCCTAATTTGTAAAATTACTGAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
** * *
98630964 CTTCAATTTGTAAAATTTGAC-GAAAGAC
1 CCCCAGTTTGTAAAA-TT-ACTGAAATAC
* *
98630992 CCCCAGATTGTAAAATTATTGAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
** *
98631019 CCTTACTTTGTAAAATTA-TCGAAATAC
1 CCCCAGTTTGTAAAATTACT-GAAATAC
** *
98631046 CCTTAGTTTGTAAAATTACCGAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
* * * *
98631073 CTCCAATTTGTGAAATTACTAAAATAC
1 CCCCAGTTTGTAAAATTACTGAAATAC
98631100 CC
1 CC
98631102 TTGTAGTGTA
Statistics
Matches: 181, Mismatches: 31, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
26 2 0.01
27 157 0.87
28 20 0.11
29 2 0.01
ACGTcount: A:0.39, C:0.20, G:0.09, T:0.32
Consensus pattern (27 bp):
CCCCAGTTTGTAAAATTACTGAAATAC
Found at i:98631029 original size:82 final size:82
Alignment explanation
Indices: 98630862--98631062 Score: 248
Period size: 82 Copynumber: 2.5 Consensus size: 82
98630852 AAGACCCCAG
* ** * * *
98630862 TTTGTAAAATTACTAAAATACCCCCTGTTTGTAAAA-TTACCAAAATACCCCCAGTTTGTAAAAT
1 TTTGTAAAATTACTGAAATACCTTCAGTTTGTAAAATTTACCAAAAGACCCCCAGATTGTAAAAT
98630926 TATCGAAATACCCCTAA
66 TATCGAAATACCCCTAA
* *
98630943 TTTGTAAAATTACTGAAATACCTTCAATTTGTAAAATTTGA-CGAAAGACCCCCAGATTGTAAAA
1 TTTGTAAAATTACTGAAATACCTTCAGTTTGTAAAATTT-ACCAAAAGACCCCCAGATTGTAAAA
* * *
98631007 TTATTGAAATACCCTTAC
65 TTATCGAAATACCCCTAA
98631025 TTTGTAAAATTA-TCGAAATACCCTT-AGTTTGTAAAATT
1 TTTGTAAAATTACT-GAAATA-CCTTCAGTTTGTAAAATT
98631063 ACCGAAATAC
Statistics
Matches: 104, Mismatches: 12, Indels: 7
0.85 0.10 0.06
Matches are distributed among these distances:
81 32 0.31
82 67 0.64
83 5 0.05
ACGTcount: A:0.39, C:0.18, G:0.09, T:0.34
Consensus pattern (82 bp):
TTTGTAAAATTACTGAAATACCTTCAGTTTGTAAAATTTACCAAAAGACCCCCAGATTGTAAAAT
TATCGAAATACCCCTAA
Found at i:98631227 original size:34 final size:35
Alignment explanation
Indices: 98631178--98631252 Score: 100
Period size: 34 Copynumber: 2.2 Consensus size: 35
98631168 GACCAACTTA
* *
98631178 GACTGTGAATTTAACTGATTTGACTGT-GATCGTAT
1 GACTGTGAATTTAACTGACTTAACTGTAG-TCGTAT
*
98631213 GACTGTG-TTTTAACTGACTTAACTGTAGTCGTAT
1 GACTGTGAATTTAACTGACTTAACTGTAGTCGTAT
98631247 GACTGT
1 GACTGT
98631253 TATGCTTTTA
Statistics
Matches: 36, Mismatches: 3, Indels: 3
0.86 0.07 0.07
Matches are distributed among these distances:
34 28 0.78
35 8 0.22
ACGTcount: A:0.24, C:0.13, G:0.23, T:0.40
Consensus pattern (35 bp):
GACTGTGAATTTAACTGACTTAACTGTAGTCGTAT
Found at i:98631544 original size:22 final size:22
Alignment explanation
Indices: 98631492--98631553 Score: 79
Period size: 22 Copynumber: 2.8 Consensus size: 22
98631482 GCCACGTAAT
*
98631492 CTGATTATGGCTTTGTGCCAAC
1 CTGATTATGGCTCTGTGCCAAC
* * *
98631514 CTAAATATGGCTCTGTGCCATC
1 CTGATTATGGCTCTGTGCCAAC
*
98631536 TTGATTATGGCTCTGTGC
1 CTGATTATGGCTCTGTGC
98631554 TAATCATATT
Statistics
Matches: 33, Mismatches: 7, Indels: 0
0.82 0.17 0.00
Matches are distributed among these distances:
22 33 1.00
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (22 bp):
CTGATTATGGCTCTGTGCCAAC
Found at i:98631698 original size:22 final size:23
Alignment explanation
Indices: 98631673--98631751 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 23
98631663 GCCTTGTGCT
98631673 ATCCTAATTATGGCTCTGT-GCC
1 ATCCTAATTATGGCTCTGTAGCC
* * * *
98631695 ATCCTGATTATGG-TTTATAACC
1 ATCCTAATTATGGCTCTGTAGCC
* *
98631717 ATTCTAATTATGGCTCT-TGGCC
1 ATCCTAATTATGGCTCTGTAGCC
* *
98631739 ATTCTATTTATGG
1 ATCCTAATTATGG
98631752 GTAGCTTTGT
Statistics
Matches: 45, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
21 3 0.07
22 40 0.89
23 2 0.04
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (23 bp):
ATCCTAATTATGGCTCTGTAGCC
Found at i:98635001 original size:28 final size:27
Alignment explanation
Indices: 98634970--98635060 Score: 103
Period size: 27 Copynumber: 3.3 Consensus size: 27
98634960 TACCCTCAAT
* *
98634970 GTGTAAAACTTACCGAAATACCCTTGTA
1 GTGTAAAA-TAACCGTAATACCCTTGTA
* *
98634998 GTGTAAAATAACTGTAATGCCCTTGTA
1 GTGTAAAATAACCGTAATACCCTTGTA
* *
98635025 GGGTAAAATAACCGTAATACCCCTGTA
1 GTGTAAAATAACCGTAATACCCTTGTA
98635052 CG-GTAAAAT
1 -GTGTAAAAT
98635061 GACGATTATA
Statistics
Matches: 54, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 45 0.83
28 9 0.17
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (27 bp):
GTGTAAAATAACCGTAATACCCTTGTA
Found at i:98642719 original size:39 final size:39
Alignment explanation
Indices: 98642545--98642703 Score: 246
Period size: 39 Copynumber: 4.1 Consensus size: 39
98642535 TGTGAATATA
** * * *
98642545 TATATGCGAGAATTATATCTAGACTTCAGGTCCGTAGGC
1 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
* *
98642584 TATAAGCGAGAATTATATCCGGACTTCATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
98642623 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
*
98642662 TATATGCGAGAATTATATCCGGACTTTAGGTCCGCAGGC
1 TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
98642701 TAT
1 TAT
98642704 GTGCTGGACA
Statistics
Matches: 112, Mismatches: 8, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
39 112 1.00
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.30
Consensus pattern (39 bp):
TATATGCGAGAATTATATCCGGACTTTATGTCCGCAGGC
Found at i:98650101 original size:75 final size:75
Alignment explanation
Indices: 98649956--98650104 Score: 210
Period size: 75 Copynumber: 2.0 Consensus size: 75
98649946 CGCTAATCGG
* * *
98649956 GTTAGCCAATGATATTAAATGTGAGCCCAGCTCTAGTCTGATAAACCAACAATGTTTGCGCCCAG
1 GTTAGCCAACGATATTAAATGTAAGCCCAACTCTAGTCTGATAAACCAACAATGTTTGCGCCCAG
98650021 CGCTAGTTGT
66 CGCTAGTTGT
* * * * *
98650031 GTTAGCCTACGATATTGAATGTAAGCCCAACTCTAGT-TGGATAAACCAACAGTGTTTGTGTCCA
1 GTTAGCCAACGATATTAAATGTAAGCCCAACTCTAGTCT-GATAAACCAACAATGTTTGCGCCCA
98650095 GCGCTAGTTG
65 GCGCTAGTTG
98650105 GGTATTCTAA
Statistics
Matches: 65, Mismatches: 8, Indels: 2
0.87 0.11 0.03
Matches are distributed among these distances:
74 1 0.02
75 64 0.98
ACGTcount: A:0.28, C:0.21, G:0.22, T:0.29
Consensus pattern (75 bp):
GTTAGCCAACGATATTAAATGTAAGCCCAACTCTAGTCTGATAAACCAACAATGTTTGCGCCCAG
CGCTAGTTGT
Found at i:98651607 original size:20 final size:20
Alignment explanation
Indices: 98651579--98651622 Score: 70
Period size: 20 Copynumber: 2.2 Consensus size: 20
98651569 TACCAACTTG
*
98651579 CAACTTACCATAATCTTTCA
1 CAACATACCATAATCTTTCA
*
98651599 CAACATACCATAGTCTTTCA
1 CAACATACCATAATCTTTCA
98651619 CAAC
1 CAAC
98651623 TTAAACATTA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.36, C:0.32, G:0.02, T:0.30
Consensus pattern (20 bp):
CAACATACCATAATCTTTCA
Found at i:98651786 original size:43 final size:42
Alignment explanation
Indices: 98651700--98651820 Score: 145
Period size: 43 Copynumber: 2.9 Consensus size: 42
98651690 ACACATAGTA
* * *
98651700 CATACCAATGCCATATCCCAGATATGGTCTTACATGGGATCT
1 CATATCAATGCCATATCCCAGATATGGTCTTACACGAGATCT
* *
98651742 CATATCAATGCCAATAGCCCAGCTATGGTCTTACACGA-AGTCT
1 CATATCAATGCC-ATATCCCAGATATGGTCTTACACGAGA-TCT
** *
98651785 CATATTGATGCCATATCCCAGATATGGTCTCACACG
1 CATATCAATGCCATATCCCAGATATGGTCTTACACG
98651821 TAATCTCCAC
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
42 33 0.49
43 34 0.51
ACGTcount: A:0.29, C:0.27, G:0.17, T:0.27
Consensus pattern (42 bp):
CATATCAATGCCATATCCCAGATATGGTCTTACACGAGATCT
Found at i:98660459 original size:75 final size:75
Alignment explanation
Indices: 98660297--98660469 Score: 175
Period size: 75 Copynumber: 2.3 Consensus size: 75
98660287 ATAGAAGAGT
* * * *
98660297 TTTGCACCTAGCACTAGTCGGGTTAGCTGACGATATTGAATGTAAGCCTAGCTCTAGTCAAATAA
1 TTTGCGCCCAGCACTAGTCGGGTTAGCTGACGATATTGAATGTAAGCCCAACTCTAGTCAAATAA
**
98660362 ACCAACAATG
66 ACCAACAACA
* * * * * ***
98660372 TTTGTGCTCAGCACTAGTTGGGTTAGCTGACGATATTGAATGTGAGCCCAACTTTAGTTGGATAA
1 TTTGCGCCCAGCACTAGTCGGGTTAGCTGACGATATTGAATGTAAGCCCAACTCTAGTCAAATAA
* ***
98660437 ACTAATGGCA
66 ACCAACAACA
*
98660447 TTTGCGCCCAGCACTAGTGGGGT
1 TTTGCGCCCAGCACTAGTCGGGT
98660470 ATTCCGATGA
Statistics
Matches: 77, Mismatches: 21, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
75 77 1.00
ACGTcount: A:0.27, C:0.20, G:0.24, T:0.29
Consensus pattern (75 bp):
TTTGCGCCCAGCACTAGTCGGGTTAGCTGACGATATTGAATGTAAGCCCAACTCTAGTCAAATAA
ACCAACAACA
Found at i:98666177 original size:20 final size:22
Alignment explanation
Indices: 98666152--98666197 Score: 60
Period size: 20 Copynumber: 2.2 Consensus size: 22
98666142 TTCATAATTT
98666152 TATTAATAGAA-TAAAT-TTAA
1 TATTAATAGAACTAAATGTTAA
* *
98666172 TATTAATTGAACTAATTGTTAA
1 TATTAATAGAACTAAATGTTAA
98666194 TATT
1 TATT
98666198 GTTAGTTAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
20 10 0.45
21 4 0.18
22 8 0.36
ACGTcount: A:0.46, C:0.02, G:0.07, T:0.46
Consensus pattern (22 bp):
TATTAATAGAACTAAATGTTAA
Found at i:98666544 original size:3 final size:3
Alignment explanation
Indices: 98666533--98666628 Score: 64
Period size: 3 Copynumber: 34.7 Consensus size: 3
98666523 GATGAACTAC
* ** *
98666533 TAT TGT TAT TAT TAT TAT T-T TGC TAT TAT T-T T-T TAT TA- TAT TAC
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* * * *
98666577 TAT TAT T-T TAT TAT TGT TAT T-T GAA TAT TA- TAT AAT TAT TAT T-T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
98666621 TAT TAT TA
1 TAT TAT TA
98666629 ATTTTGTTTT
Statistics
Matches: 71, Mismatches: 15, Indels: 14
0.71 0.15 0.14
Matches are distributed among these distances:
2 15 0.21
3 56 0.79
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:98666569 original size:21 final size:22
Alignment explanation
Indices: 98666530--98666591 Score: 81
Period size: 21 Copynumber: 2.8 Consensus size: 22
98666520 AAAGATGAAC
* *
98666530 TACTATTGTTATTATTATTATTT
1 TACTATTATT-TTATTATTATAT
*
98666553 TGCTATTATTTT-TTATTATAT
1 TACTATTATTTTATTATTATAT
98666574 TACTATTATTTTATTATT
1 TACTATTATTTTATTATT
98666592 GTTATTTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 3
0.83 0.10 0.07
Matches are distributed among these distances:
21 19 0.56
22 7 0.21
23 8 0.24
ACGTcount: A:0.26, C:0.05, G:0.03, T:0.66
Consensus pattern (22 bp):
TACTATTATTTTATTATTATAT
Found at i:98666591 original size:11 final size:11
Alignment explanation
Indices: 98666541--98666645 Score: 77
Period size: 11 Copynumber: 9.3 Consensus size: 11
98666531 ACTATTGTTA
98666541 TTATTATTATT
1 TTATTATTATT
**
98666552 TTGCTATTATT
1 TTATTATTATT
*
98666563 TT-TTATTATA
1 TTATTATTATT
*
98666573 TTACTATTATT
1 TTATTATTATT
98666584 TTATTATTGTTATT
1 TTATTA---TTATT
* * *
98666598 TGAATATTATA
1 TTATTATTATT
*
98666609 TAATTATTATT
1 TTATTATTATT
98666620 TTATTATTAATT
1 TTATTATT-ATT
* *
98666632 TTGTTTTTATT
1 TTATTATTATT
98666643 TTA
1 TTA
98666646 AGTGTATTTG
Statistics
Matches: 72, Mismatches: 17, Indels: 10
0.73 0.17 0.10
Matches are distributed among these distances:
10 8 0.11
11 46 0.64
12 9 0.12
14 9 0.12
ACGTcount: A:0.28, C:0.02, G:0.04, T:0.67
Consensus pattern (11 bp):
TTATTATTATT
Found at i:98666628 original size:14 final size:14
Alignment explanation
Indices: 98666533--98666628 Score: 74
Period size: 14 Copynumber: 6.9 Consensus size: 14
98666523 GATGAACTAC
98666533 TATTGTTATTATTAT
1 TATT-TTATTATTAT
**
98666548 TATTTTGCTATTAT
1 TATTTTATTATTAT
98666562 T-TTTTATTA-TAT
1 TATTTTATTATTAT
*
98666574 TACTATTATT-TTAT
1 TA-TTTTATTATTAT
* *
98666588 TATTGTTATT-TGAA
1 TATT-TTATTATTAT
* *
98666602 TATTATATAATTAT
1 TATTTTATTATTAT
98666616 TATTTTATTATTA
1 TATTTTATTATTA
98666629 ATTTTGTTTT
Statistics
Matches: 62, Mismatches: 14, Indels: 11
0.71 0.16 0.13
Matches are distributed among these distances:
12 4 0.06
13 10 0.16
14 44 0.71
15 4 0.06
ACGTcount: A:0.29, C:0.02, G:0.04, T:0.65
Consensus pattern (14 bp):
TATTTTATTATTAT
Found at i:98666724 original size:25 final size:26
Alignment explanation
Indices: 98666696--98666746 Score: 70
Period size: 25 Copynumber: 2.0 Consensus size: 26
98666686 TGTAGGAAAT
*
98666696 ATTTATTTTGTAT-T-ATATTTTTTAA
1 ATTTATTTT-TATATAAAATTTTTTAA
98666721 ATTTATTTTTATATAAAATTTTTTAA
1 ATTTATTTTTATATAAAATTTTTTAA
98666747 TACGAGTGAA
Statistics
Matches: 23, Mismatches: 1, Indels: 3
0.85 0.04 0.11
Matches are distributed among these distances:
24 3 0.13
25 10 0.43
26 10 0.43
ACGTcount: A:0.33, C:0.00, G:0.02, T:0.65
Consensus pattern (26 bp):
ATTTATTTTTATATAAAATTTTTTAA
Found at i:98682463 original size:11 final size:11
Alignment explanation
Indices: 98682409--98682482 Score: 52
Period size: 11 Copynumber: 7.3 Consensus size: 11
98682399 TGGTTGATAC
98682409 GATATGCACAT
1 GATATGCACAT
* *
98682420 GACATG--TAT
1 GATATGCACAT
98682429 GATATGCACAT
1 GATATGCACAT
* *
98682440 GAAATG--TAT
1 GATATGCACAT
98682449 GATATGCACAT
1 GATATGCACAT
*
98682460 GATATG--TAT
1 GATATGCACAT
*
98682469 GAAATGCACAT
1 GATATGCACAT
98682480 GAT
1 GAT
98682483 GTATTCATAA
Statistics
Matches: 45, Mismatches: 12, Indels: 12
0.65 0.17 0.17
Matches are distributed among these distances:
9 21 0.47
11 24 0.53
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (11 bp):
GATATGCACAT
Found at i:98682482 original size:20 final size:20
Alignment explanation
Indices: 98682409--98682482 Score: 121
Period size: 20 Copynumber: 3.7 Consensus size: 20
98682399 TGGTTGATAC
*
98682409 GATATGCACATGACATGTAT
1 GATATGCACATGATATGTAT
*
98682429 GATATGCACATGAAATGTAT
1 GATATGCACATGATATGTAT
98682449 GATATGCACATGATATGTAT
1 GATATGCACATGATATGTAT
*
98682469 GAAATGCACATGAT
1 GATATGCACATGAT
98682483 GTATTCATAA
Statistics
Matches: 51, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 51 1.00
ACGTcount: A:0.38, C:0.12, G:0.20, T:0.30
Consensus pattern (20 bp):
GATATGCACATGATATGTAT
Found at i:98682594 original size:26 final size:26
Alignment explanation
Indices: 98682532--98682664 Score: 181
Period size: 25 Copynumber: 5.3 Consensus size: 26
98682522 GAGGAAGTGC
*
98682532 AAAAGGGCTTATGCCCCAATTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
98682558 -AAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
98682583 AAAAGGGCTTATGCCCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
98682609 AAAAGGGCTT-TGCCCCAGTTTA-TC
1 AAAAGGGCTTATGCCCCAGTTTATTG
*
98682633 AAAAGGG-TT-TTCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTATTG
98682655 AAAAGAGGCT
1 AAAAG-GGCT
98682665 AGGCCTCTAG
Statistics
Matches: 100, Mismatches: 3, Indels: 10
0.88 0.03 0.09
Matches are distributed among these distances:
22 8 0.08
23 12 0.12
24 9 0.09
25 36 0.36
26 35 0.35
ACGTcount: A:0.29, C:0.20, G:0.22, T:0.30
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTATTG
Found at i:98682608 original size:51 final size:49
Alignment explanation
Indices: 98682531--98682664 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 49
98682521 TGAGGAAGTG
*
98682531 CAAAAGGGCTTATGCCCCAATTTATTGAAAGGGCTTATGCCCCAGTTTATT
1 CAAAAGGGCTTATGCCCCAGTTTATTGAAAGGGCTT-TGCCCCAGTTTA-T
*
98682582 GAAAAGGGCTTATGCCCCAGTTTATTGAAAAGGGCTTTGCCCCAGTTTAT
1 CAAAAGGGCTTATGCCCCAGTTTATTG-AAAGGGCTTTGCCCCAGTTTAT
* *
98682632 CAAAAGGG-TT-TTCCCCAG-TTATTAAAAGAGGCT
1 CAAAAGGGCTTATGCCCCAGTTTATTGAAAG-GGCT
98682665 AGGCCTCTAG
Statistics
Matches: 76, Mismatches: 5, Indels: 8
0.85 0.06 0.09
Matches are distributed among these distances:
46 4 0.05
47 9 0.12
48 7 0.09
49 2 0.03
50 8 0.11
51 37 0.49
52 9 0.12
ACGTcount: A:0.28, C:0.20, G:0.22, T:0.30
Consensus pattern (49 bp):
CAAAAGGGCTTATGCCCCAGTTTATTGAAAGGGCTTTGCCCCAGTTTAT
Found at i:98687231 original size:3 final size:3
Alignment explanation
Indices: 98687223--98687260 Score: 53
Period size: 3 Copynumber: 13.0 Consensus size: 3
98687213 AGATATTTAC
98687223 TTA TTA TTA TTA TTA TTA TTA TTA -TA TT- TTA TCTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA
98687261 ATTGAGATAG
Statistics
Matches: 32, Mismatches: 0, Indels: 6
0.84 0.00 0.16
Matches are distributed among these distances:
2 4 0.12
3 25 0.78
4 3 0.09
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (3 bp):
TTA
Found at i:98689370 original size:20 final size:20
Alignment explanation
Indices: 98689345--98689393 Score: 98
Period size: 20 Copynumber: 2.5 Consensus size: 20
98689335 GCCCACGGGT
98689345 AGGCCACACGGGCATGTTCC
1 AGGCCACACGGGCATGTTCC
98689365 AGGCCACACGGGCATGTTCC
1 AGGCCACACGGGCATGTTCC
98689385 AGGCCACAC
1 AGGCCACAC
98689394 AGGTATGTCT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.22, C:0.37, G:0.29, T:0.12
Consensus pattern (20 bp):
AGGCCACACGGGCATGTTCC
Found at i:98689401 original size:20 final size:20
Alignment explanation
Indices: 98689345--98689417 Score: 94
Period size: 20 Copynumber: 3.6 Consensus size: 20
98689335 GCCCACGGGT
*
98689345 AGGCCACACGGGCATGTTCC
1 AGGCCACACAGGCATGTTCC
*
98689365 AGGCCACACGGGCATGTTCC
1 AGGCCACACAGGCATGTTCC
*
98689385 AGGCCACACAGGTATG-TCTC
1 AGGCCACACAGGCATGTTC-C
*
98689405 AGGCCAAACAGGC
1 AGGCCACACAGGC
98689418 GTGTGCCCCT
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
19 2 0.04
20 46 0.96
ACGTcount: A:0.25, C:0.33, G:0.29, T:0.14
Consensus pattern (20 bp):
AGGCCACACAGGCATGTTCC
Done.