Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 293 of 297
Found at i:99566827 original size:16 final size:16
Alignment explanation
Indices: 99566806--99566847 Score: 59
Period size: 16 Copynumber: 2.6 Consensus size: 16
99566796 ATGAGAAAAC
99566806 AAAGAAAAGAAAAGAA
1 AAAGAAAAGAAAAGAA
*
99566822 AAAGAAAATG-AAATAA
1 AAAGAAAA-GAAAAGAA
99566838 AAAGAAAAGA
1 AAAGAAAAGA
99566848 GAGGCAAAAG
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
15 1 0.04
16 21 0.91
17 1 0.04
ACGTcount: A:0.79, C:0.00, G:0.17, T:0.05
Consensus pattern (16 bp):
AAAGAAAAGAAAAGAA
Found at i:99566945 original size:12 final size:12
Alignment explanation
Indices: 99566926--99566961 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
99566916 CTTTGAAAAA
*
99566926 AATGAAAATGAG
1 AATGAAAAAGAG
*
99566938 ATTGAAAAAGAG
1 AATGAAAAAGAG
99566950 AATGAAAAAGAG
1 AATGAAAAAGAG
99566962 TTTGAGAGAG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
12 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.25, T:0.14
Consensus pattern (12 bp):
AATGAAAAAGAG
Found at i:99567008 original size:18 final size:19
Alignment explanation
Indices: 99566972--99567010 Score: 53
Period size: 18 Copynumber: 2.1 Consensus size: 19
99566962 TTTGAGAGAG
*
99566972 AAAAAGAATGTGAACAAGA
1 AAAAAGAATGTGAAAAAGA
*
99566991 AAAAAGAGTG-GAAAAAGA
1 AAAAAGAATGTGAAAAAGA
99567009 AA
1 AA
99567011 TTGAGATAAA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
18 9 0.50
19 9 0.50
ACGTcount: A:0.67, C:0.03, G:0.23, T:0.08
Consensus pattern (19 bp):
AAAAAGAATGTGAAAAAGA
Found at i:99569148 original size:20 final size:21
Alignment explanation
Indices: 99569117--99569161 Score: 58
Period size: 20 Copynumber: 2.2 Consensus size: 21
99569107 TCTGCTGTCC
*
99569117 AGCTCAAATCCAGCTTATTC-G
1 AGCTCAAATCCAACTT-TTCTG
99569138 AGCTC-AATCCAACTTTTCTG
1 AGCTCAAATCCAACTTTTCTG
99569158 AGCT
1 AGCT
99569162 AAACCGAGCT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
19 3 0.14
20 14 0.64
21 5 0.23
ACGTcount: A:0.27, C:0.29, G:0.13, T:0.31
Consensus pattern (21 bp):
AGCTCAAATCCAACTTTTCTG
Found at i:99570099 original size:22 final size:20
Alignment explanation
Indices: 99570067--99570115 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 20
99570057 GCCGAATTTA
99570067 TGAACTATTTTAATACATTAGTG
1 TGAAC-ATTTTAAT-CATT-GTG
* *
99570090 TGAACATTTTTATTATTGTG
1 TGAACATTTTAATCATTGTG
99570110 TGAACA
1 TGAACA
99570116 CCTAGATGCC
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
20 9 0.38
21 3 0.12
22 7 0.29
23 5 0.21
ACGTcount: A:0.33, C:0.08, G:0.14, T:0.45
Consensus pattern (20 bp):
TGAACATTTTAATCATTGTG
Found at i:99572108 original size:12 final size:11
Alignment explanation
Indices: 99572077--99572106 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
99572067 ATATATTTCC
99572077 TTTTTTTTGAA
1 TTTTTTTTGAA
99572088 TTTTTTTTGAA
1 TTTTTTTTGAA
99572099 TTTTTTTT
1 TTTTTTTT
99572107 TGCTAATATA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.13, C:0.00, G:0.07, T:0.80
Consensus pattern (11 bp):
TTTTTTTTGAA
Found at i:99573476 original size:30 final size:30
Alignment explanation
Indices: 99573390--99573477 Score: 88
Period size: 30 Copynumber: 2.9 Consensus size: 30
99573380 CTACCTCACT
* *
99573390 TTCAACTCACGAGCTAAACCTTAGCTCAAC
1 TTCAGCTCACGAGCTAAAGCTTAGCTCAAC
* * ** *
99573420 TTCAGCTTAGGAG-TTTAGCCTCAGCTCAAC
1 TTCAGCTCACGAGCTAAAG-CTTAGCTCAAC
*
99573450 TTTAGCTCACGAGCTAAAGCTTAGCTCA
1 TTCAGCTCACGAGCTAAAGCTTAGCTCA
99573478 TTTTAGTTTA
Statistics
Matches: 43, Mismatches: 13, Indels: 4
0.72 0.22 0.07
Matches are distributed among these distances:
29 2 0.05
30 38 0.88
31 3 0.07
ACGTcount: A:0.28, C:0.28, G:0.16, T:0.27
Consensus pattern (30 bp):
TTCAGCTCACGAGCTAAAGCTTAGCTCAAC
Found at i:99576043 original size:6 final size:5
Alignment explanation
Indices: 99576019--99576081 Score: 58
Period size: 5 Copynumber: 12.0 Consensus size: 5
99576009 AAGAGAAAAC
*
99576019 AAAGA AAAGA AAAGAA AAAGCA AAAGCA AAAGA AGA-A AAAGA AAATGA
1 AAAGA AAAGA AAAG-A AAAG-A AAAG-A AAAGA AAAGA AAAGA AAA-GA
99576067 AATA-A AAAGA AAAGA
1 AA-AGA AAAGA AAAGA
99576082 GAGGCAAGAG
Statistics
Matches: 50, Mismatches: 3, Indels: 10
0.79 0.05 0.16
Matches are distributed among these distances:
4 4 0.08
5 25 0.50
6 20 0.40
7 1 0.02
ACGTcount: A:0.76, C:0.03, G:0.17, T:0.03
Consensus pattern (5 bp):
AAAGA
Found at i:99576049 original size:12 final size:10
Alignment explanation
Indices: 99576019--99576081 Score: 58
Period size: 11 Copynumber: 6.0 Consensus size: 10
99576009 AAGAGAAAAC
99576019 AAAGAAAAGA
1 AAAGAAAAGA
99576029 AAAGAAAAAGCA
1 AAAG-AAAAG-A
99576041 AAAGCAAAAGA
1 AAAG-AAAAGA
*
99576052 AGA-AAAAGA
1 AAAGAAAAGA
99576061 AAATGAAATA-A
1 AAA-GAAA-AGA
99576072 AAAGAAAAGA
1 AAAGAAAAGA
99576082 GAGGCAAGAG
Statistics
Matches: 44, Mismatches: 3, Indels: 12
0.75 0.05 0.20
Matches are distributed among these distances:
9 9 0.20
10 9 0.20
11 15 0.34
12 11 0.25
ACGTcount: A:0.76, C:0.03, G:0.17, T:0.03
Consensus pattern (10 bp):
AAAGAAAAGA
Found at i:99576161 original size:11 final size:12
Alignment explanation
Indices: 99576129--99576159 Score: 62
Period size: 12 Copynumber: 2.6 Consensus size: 12
99576119 TTGAGAGAAC
99576129 TTGAAAAAGCCT
1 TTGAAAAAGCCT
99576141 TTGAAAAAGCCT
1 TTGAAAAAGCCT
99576153 TTGAAAA
1 TTGAAAA
99576160 GCAAAAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.45, C:0.13, G:0.16, T:0.26
Consensus pattern (12 bp):
TTGAAAAAGCCT
Found at i:99578373 original size:30 final size:30
Alignment explanation
Indices: 99578339--99578435 Score: 106
Period size: 30 Copynumber: 3.2 Consensus size: 30
99578329 AGCTCACTCC
99578339 TAGCTCATA-TTTAGCTCACGAGCTAAACCT
1 TAGCTCA-ACTTTAGCTCACGAGCTAAACCT
* * * * * *
99578369 TAGCTCAACTTCAGCTTAGGAGTTTAGCCT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
* *
99578399 CAGCTCAACTTTAGCTCACGAGCTAAAACT
1 TAGCTCAACTTTAGCTCACGAGCTAAACCT
99578429 TAGCTCA
1 TAGCTCA
99578436 TTTTAGTTTA
Statistics
Matches: 51, Mismatches: 15, Indels: 2
0.75 0.22 0.03
Matches are distributed among these distances:
29 1 0.02
30 50 0.98
ACGTcount: A:0.29, C:0.27, G:0.15, T:0.29
Consensus pattern (30 bp):
TAGCTCAACTTTAGCTCACGAGCTAAACCT
Found at i:99580018 original size:27 final size:26
Alignment explanation
Indices: 99579969--99580028 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 26
99579959 TAGCAGCAAC
*
99579969 AATTAAATTTGTCCCTAAGCTAGACA
1 AATTAAATTTGTCCCTAAACTAGACA
99579995 AATTAAATTGATGT-CCTAAACTAGACA
1 AATTAAATT--TGTCCCTAAACTAGACA
*
99580022 CATTAAA
1 AATTAAA
99580029 GCTGGGTATT
Statistics
Matches: 30, Mismatches: 2, Indels: 3
0.86 0.06 0.09
Matches are distributed among these distances:
26 9 0.30
27 18 0.60
28 3 0.10
ACGTcount: A:0.43, C:0.17, G:0.10, T:0.30
Consensus pattern (26 bp):
AATTAAATTTGTCCCTAAACTAGACA
Found at i:99586307 original size:17 final size:17
Alignment explanation
Indices: 99586285--99586317 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
99586275 ATAAGAACTA
99586285 TGAATATTCTTCCAATT
1 TGAATATTCTTCCAATT
99586302 TGAATATTCTTCCAAT
1 TGAATATTCTTCCAAT
99586318 CATAAGTATA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.45
Consensus pattern (17 bp):
TGAATATTCTTCCAATT
Found at i:99591486 original size:41 final size:40
Alignment explanation
Indices: 99591387--99591490 Score: 109
Period size: 40 Copynumber: 2.6 Consensus size: 40
99591377 CTTTTATCAA
** *
99591387 ATCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
*** ** *
99591427 ATCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTC
1 ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
*
99591467 ATTCACCGGCATTTCGCCTGCTAG
1 A-TCACCGGCATTTAGCCTGCTAG
99591491 GCTTGAAGCC
Statistics
Matches: 50, Mismatches: 13, Indels: 1
0.78 0.20 0.02
Matches are distributed among these distances:
40 32 0.64
41 18 0.36
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.27
Consensus pattern (40 bp):
ATCACCGGCATTTAGCCTGCTAGACTTTAAACCCGAACTC
Found at i:99591510 original size:41 final size:41
Alignment explanation
Indices: 99591388--99591514 Score: 132
Period size: 41 Copynumber: 3.1 Consensus size: 41
99591378 TTTTATCAAA
* * *
99591388 TCACCGGCATTTAGCCTGCTAGGTTTTAAACCCGAATTCA-
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAACTCAT
*** * * *
99591428 TCACCGGCACGAAGCCTGCTAGACTTTAAGTCTGAACTCAT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAACTCAT
* *
99591469 TCACCGGCATTTCGCCTGCTAGGCTTGAAGCCCGATA-TCAT
1 TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGA-ACTCAT
99591510 TCACC
1 TCACC
99591515 TGTTCTTTCA
Statistics
Matches: 68, Mismatches: 17, Indels: 3
0.77 0.19 0.03
Matches are distributed among these distances:
40 31 0.46
41 36 0.53
42 1 0.01
ACGTcount: A:0.24, C:0.31, G:0.19, T:0.27
Consensus pattern (41 bp):
TCACCGGCATTTAGCCTGCTAGGCTTTAAGCCCGAACTCAT
Found at i:99603758 original size:37 final size:37
Alignment explanation
Indices: 99603679--99603786 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
99603669 AGCTCAGATG
** *
99603679 AAATCTCCACACAAAGTTATCGGGTCTTA-CCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
99603715 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
99603752 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
99603787 ATATATTTCC
Statistics
Matches: 67, Mismatches: 4, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
36 26 0.39
37 41 0.61
ACGTcount: A:0.28, C:0.31, G:0.19, T:0.23
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:99603988 original size:48 final size:48
Alignment explanation
Indices: 99603933--99604041 Score: 191
Period size: 48 Copynumber: 2.3 Consensus size: 48
99603923 ACACATCGCC
99603933 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
* * *
99603981 TACATATTTCATATTAGCCATTCGGCTTTACCACATATACTTATCTCA
1 TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
99604029 TACATATTTCACA
1 TACATATTTCACA
99604042 GCAACAGCTT
Statistics
Matches: 57, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
48 57 1.00
ACGTcount: A:0.31, C:0.27, G:0.06, T:0.37
Consensus pattern (48 bp):
TACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCA
Found at i:99604193 original size:114 final size:114
Alignment explanation
Indices: 99603993--99604221 Score: 408
Period size: 114 Copynumber: 2.0 Consensus size: 114
99603983 CATATTTCAT
* *
99603993 ATTAGCCATTCGGCTTTACCACATATACTTATCTCATACATATTTCACAGCAACAGCTTATAAGT
1 ATTAGCCATTCGGCTTTACCACATATACATAACTCATACATATTTCACAGCAACAGCTTATAAGT
99604058 AATTCAAATAGTTTCATCAATGTTTACAACAAATTCACATATTCACTAC
66 AATTCAAATAGTTTCATCAATGTTTACAACAAATTCACATATTCACTAC
99604107 ATTAGCCATTCGGCTTTACCACATATACATAACTCATACATCAATTTC-C-GCAACAGCTTATAA
1 ATTAGCCATTCGGCTTTACCACATATACATAACTCATACAT--ATTTCACAGCAACAGCTTATAA
99604170 GTAATTCAAATAGTTTCATCAATGTTTACAACAAATTCACATATTCACTAC
64 GTAATTCAAATAGTTTCATCAATGTTTACAACAAATTCACATATTCACTAC
99604221 A
1 A
99604222 AGCTGTTTTC
Statistics
Matches: 111, Mismatches: 2, Indels: 4
0.95 0.02 0.03
Matches are distributed among these distances:
114 105 0.95
115 1 0.01
116 5 0.05
ACGTcount: A:0.37, C:0.23, G:0.07, T:0.33
Consensus pattern (114 bp):
ATTAGCCATTCGGCTTTACCACATATACATAACTCATACATATTTCACAGCAACAGCTTATAAGT
AATTCAAATAGTTTCATCAATGTTTACAACAAATTCACATATTCACTAC
Found at i:99608265 original size:31 final size:31
Alignment explanation
Indices: 99608223--99608332 Score: 166
Period size: 31 Copynumber: 3.5 Consensus size: 31
99608213 TTTAACGGTT
*
99608223 ACTGGGCCGAAGCCTTTTTATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
* **
99608254 ACTAGGCCGAAGCGATTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
99608285 ACTGGGCCAAAGCCTTTTCATAAATCATATC
1 ACTGGGCCGAAGCCTTTTCATAAATCATATC
*
99608316 ACTGGGCTGAAGCCTTT
1 ACTGGGCCGAAGCCTTT
99608333 ACTGTAAACG
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 69 1.00
ACGTcount: A:0.30, C:0.24, G:0.17, T:0.29
Consensus pattern (31 bp):
ACTGGGCCGAAGCCTTTTCATAAATCATATC
Found at i:99608581 original size:25 final size:25
Alignment explanation
Indices: 99608553--99608622 Score: 97
Period size: 25 Copynumber: 2.8 Consensus size: 25
99608543 CTCTTTTAAT
99608553 AACTGGGGCAAAGCCC-TTTCTGATA
1 AACTGGGGCAAAGCCCTTTTC-GATA
* *
99608578 AACTAGGGCAAAGCCCTTTTCGGTA
1 AACTGGGGCAAAGCCCTTTTCGATA
*
99608603 AACTGGGGCAGAGCCCTTTT
1 AACTGGGGCAAAGCCCTTTT
99608623 AGCACTTCCT
Statistics
Matches: 40, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 36 0.90
26 4 0.10
ACGTcount: A:0.26, C:0.24, G:0.26, T:0.24
Consensus pattern (25 bp):
AACTGGGGCAAAGCCCTTTTCGATA
Found at i:99609580 original size:27 final size:27
Alignment explanation
Indices: 99609550--99609647 Score: 108
Period size: 27 Copynumber: 3.6 Consensus size: 27
99609540 GTAAATCTAC
*
99609550 AAACCAAGGGTATTTCAATAATTTTGT
1 AAACCAAGGGTATTTCTATAATTTTGT
*
99609577 AAACCAATGGTATTTCTATAATTTT-T
1 AAACCAAGGGTATTTCTATAATTTTGT
* *
99609603 AGAAAGTCAAGGGTATTTCTGTAATTTTGT
1 --AAA-CCAAGGGTATTTCTATAATTTTGT
* *
99609633 AAATCAGGGGTATTT
1 AAACCAAGGGTATTT
99609648 TGGTAATTTT
Statistics
Matches: 61, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
26 1 0.02
27 34 0.56
28 6 0.10
29 19 0.31
30 1 0.02
ACGTcount: A:0.34, C:0.09, G:0.17, T:0.40
Consensus pattern (27 bp):
AAACCAAGGGTATTTCTATAATTTTGT
Found at i:99609653 original size:27 final size:26
Alignment explanation
Indices: 99609613--99609796 Score: 154
Period size: 27 Copynumber: 6.8 Consensus size: 26
99609603 AGAAAGTCAA
**
99609613 GGGTATTTCT-GTAATTTTGTAAATCAG
1 GGGTATTT-TGGTAATTTTACAAA-CAG
**
99609640 GGGTATTTTGGTAATTTTACAAATTG
1 GGGTATTTTGGTAATTTTACAAACAG
* * *
99609666 AGGGTATTTCGATAATTTCACAAACCAG
1 -GGGTATTTTGGTAATTTTACAAA-CAG
* *
99609694 TGGTATTTCGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
*
99609721 GGGTATTTTGGTAATGTTACAAACTAG
1 GGGTATTTTGGTAATTTTACAAAC-AG
* **
99609748 GGGTATTTTGGTAATTCTATCCTACAG
1 GGGTATTTTGGTAATTTTA-CAAACAG
** *
99609775 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTTGGTAATTTTACAA
99609797 TCGAGGGTAA
Statistics
Matches: 127, Mismatches: 25, Indels: 11
0.78 0.15 0.07
Matches are distributed among these distances:
26 4 0.03
27 119 0.94
28 4 0.03
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (26 bp):
GGGTATTTTGGTAATTTTACAAACAG
Found at i:99609780 original size:81 final size:81
Alignment explanation
Indices: 99609613--99609796 Score: 196
Period size: 81 Copynumber: 2.3 Consensus size: 81
99609603 AGAAAGTCAA
* ** * *
99609613 GGGTATTTCTGTAATTTTGTAAATCAGGGGTATTTTGGTAATTTTACAAATTGAGGGTATTTCGA
1 GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATGTTACAAATAGAGGGTATTTCGA
99609678 TAATTTCACAAACCAG
66 TAATTTCACAAACCAG
* * *
99609694 TGGTATTTCGGTAATTTTACAAA-CTAGGGGTATTTTGGTAATGTTACAAACTAG-GGGTATTTT
1 GGGTATTTCAGTAATTTTACAAATC-AGGGGTATTTTGGTAATGTTACAAA-TAGAGGGTATTTC
* **
99609757 GGTAA-TTCTATCCTA-CAG
64 GATAATTTC-A-CAAACCAG
*
99609775 GGGTATTTCAGTAATTTCACAA
1 GGGTATTTCAGTAATTTTACAA
99609797 TCGAGGGTAA
Statistics
Matches: 86, Mismatches: 13, Indels: 8
0.80 0.12 0.07
Matches are distributed among these distances:
80 4 0.05
81 78 0.91
82 4 0.05
ACGTcount: A:0.29, C:0.11, G:0.21, T:0.39
Consensus pattern (81 bp):
GGGTATTTCAGTAATTTTACAAATCAGGGGTATTTTGGTAATGTTACAAATAGAGGGTATTTCGA
TAATTTCACAAACCAG
Found at i:99609829 original size:27 final size:27
Alignment explanation
Indices: 99609795--99610073 Score: 389
Period size: 27 Copynumber: 10.3 Consensus size: 27
99609785 GTAATTTCAC
*
99609795 AATCGAGGGTAAAATGGTAATTTTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* *
99609822 AA-CTGAGGGTAAAATGGTAATTTTGTA
1 AATC-GAGGGTAAAATGGTAATTCTATA
*
99609849 AATCGAGGGTAAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
99609876 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
99609903 AATCGAGGGTAAAATGATAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
*
99609930 AATCGAGGGTAAAATGGTAATTCTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
99609957 AATCGAGGGTAAAATGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
99609984 AATCGAGGGTAAAACGGTAATTTTGTA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
99610011 AATTGAGGGTGAAACGGTAATTCTATA
1 AATCGAGGGTAAAATGGTAATTCTATA
* * *
99610038 AATCGGGGGTAAAGTGGTAATTCTACA
1 AATCGAGGGTAAAATGGTAATTCTATA
99610065 AATCGAGGG
1 AATCGAGGG
99610074 CATTTCAGCA
Statistics
Matches: 225, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
26 1 0.00
27 223 0.99
28 1 0.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (27 bp):
AATCGAGGGTAAAATGGTAATTCTATA
Found at i:99609911 original size:81 final size:81
Alignment explanation
Indices: 99609795--99610073 Score: 452
Period size: 81 Copynumber: 3.4 Consensus size: 81
99609785 GTAATTTCAC
*
99609795 AATCGAGGGTAAAATGGTAATTTTATAAA-CTGAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
1 AATCGAGGGTAAAATGGTAATTCTATAAATC-GAGGGTAAAATGGTAATTTTGTAAATCGAGGGT
99609859 AAAACGGTAATTCTATA
65 AAAACGGTAATTCTATA
*
99609876 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGATAATTTTGTAAATCGAGGGTA
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
* *
99609941 AAATGGTAATTCTGTA
66 AAACGGTAATTCTATA
* * *
99609957 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAACGGTAATTTTGTAAATTGAGGGTG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
99610022 AAACGGTAATTCTATA
66 AAACGGTAATTCTATA
* * *
99610038 AATCGGGGGTAAAGTGGTAATTCTACAAATCGAGGG
1 AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGG
99610074 CATTTCAGCA
Statistics
Matches: 184, Mismatches: 13, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
81 183 0.99
82 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.29
Consensus pattern (81 bp):
AATCGAGGGTAAAATGGTAATTCTATAAATCGAGGGTAAAATGGTAATTTTGTAAATCGAGGGTA
AAACGGTAATTCTATA
Found at i:99612457 original size:21 final size:22
Alignment explanation
Indices: 99612417--99612457 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
99612407 TTCCAAATAA
* *
99612417 AACATTATATCATTTCTAATTC
1 AACATTATATCAATTATAATTC
99612439 AACATT-TATCAATTATAAT
1 AACATTATATCAATTATAAT
99612458 CGGGCATGTG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 11 0.65
22 6 0.35
ACGTcount: A:0.41, C:0.15, G:0.00, T:0.44
Consensus pattern (22 bp):
AACATTATATCAATTATAATTC
Found at i:99614778 original size:34 final size:34
Alignment explanation
Indices: 99614740--99614846 Score: 169
Period size: 34 Copynumber: 3.1 Consensus size: 34
99614730 ATTTGCCTTT
*
99614740 CTGATACTATTACTGTAATGGGCTAAGGCCCACA
1 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
*
99614774 CTGATACTGTTACTGTAATAGGCTAAGGCCCACA
1 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
* * *
99614808 CTAATACTGCTACTATAATGGGCTAAGGCCCACA
1 CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
99614842 CTGAT
1 CTGAT
99614847 GCTGGACTGT
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
34 66 1.00
ACGTcount: A:0.30, C:0.24, G:0.20, T:0.26
Consensus pattern (34 bp):
CTGATACTGTTACTGTAATGGGCTAAGGCCCACA
Found at i:99621363 original size:39 final size:39
Alignment explanation
Indices: 99621309--99621385 Score: 127
Period size: 39 Copynumber: 2.0 Consensus size: 39
99621299 TAAATGCTCA
* * *
99621309 CATCAAACTGTCCACACGAGTCATAGTCACTTTCTTATG
1 CATCAAACTATCCACACAAGTCATAGTCACTTACTTATG
99621348 CATCAAACTATCCACACAAGTCATAGTCACTTACTTAT
1 CATCAAACTATCCACACAAGTCATAGTCACTTACTTAT
99621386 TTATAATTCG
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 35 1.00
ACGTcount: A:0.32, C:0.29, G:0.09, T:0.30
Consensus pattern (39 bp):
CATCAAACTATCCACACAAGTCATAGTCACTTACTTATG
Found at i:99624760 original size:37 final size:37
Alignment explanation
Indices: 99624710--99624788 Score: 106
Period size: 37 Copynumber: 2.1 Consensus size: 37
99624700 TTATTACGAA
* * *
99624710 GTCTTACTCGGACATAA-TCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATTC-CCACACGAAGTCATCGG
*
99624747 GTCTTACCCGGACAAAATTCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
99624784 GTCTT
1 GTCTT
99624789 TAGAGCTCGG
Statistics
Matches: 37, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 35 0.95
38 2 0.05
ACGTcount: A:0.25, C:0.29, G:0.19, T:0.27
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATTCCCACACGAAGTCATCGG
Found at i:99624985 original size:47 final size:47
Alignment explanation
Indices: 99624907--99625302 Score: 621
Period size: 47 Copynumber: 8.4 Consensus size: 47
99624897 CCCTTCGGGA
* * * * * * *
99624907 CTTATCACATTTATGCACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
99624954 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99625001 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
99625048 CTTATCACACATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
99625095 CATATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99625142 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99625189 CTTAATCTCATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTT-ATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99625237 CTTATCACACATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
99625284 CTTACCACATATATACACT
1 CTTATCACATATATACACT
99625303 GTCTTGGCTG
Statistics
Matches: 324, Mismatches: 24, Indels: 2
0.93 0.07 0.01
Matches are distributed among these distances:
47 279 0.86
48 45 0.14
ACGTcount: A:0.29, C:0.31, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:99632566 original size:27 final size:27
Alignment explanation
Indices: 99632535--99632712 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
99632525 TAAATTGTAC
99632535 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
99632562 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
99632588 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
99632616 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
99632644 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
99632671 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
99632698 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
99632713 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:99632649 original size:82 final size:81
Alignment explanation
Indices: 99632536--99632691 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
99632526 AAATTGTACA
* *
99632536 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
99632600 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
99632617 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
99632682 TGCGAGTTGA
65 TGCGAATTGA
99632692 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:99632703 original size:82 final size:81
Alignment explanation
Indices: 99632532--99632712 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
99632522 GATTAAATTG
* *
99632532 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
99632597 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
99632613 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
99632677 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
99632695 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
99632713 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:99635799 original size:46 final size:45
Alignment explanation
Indices: 99635747--99635917 Score: 143
Period size: 46 Copynumber: 3.7 Consensus size: 45
99635737 ACATCTCGTA
* *
99635747 GCCGATGCATGTCCCATACATGTCTCACACTG-ACTTACGTCTCGAG
1 GCCGATGCATGTCCCATACATGTCTTACACTGCAC-T-CGTCTCAAG
* * *
99635793 GCCGATGCATATCCCAGACATGTCTTACACTAGCACTCGTCTCAAT
1 GCCGATGCATGTCCCATACATGTCTTACACT-GCACTCGTCTCAAG
* * *
99635839 GCCGATGCCATGTCCC-TAACATGGTCTTACACTG-GCTC-TCATTATGTG
1 GCCGATG-CATGTCCCAT-ACAT-GTCTTACACTGCACTCGTC-TCA--AG
* *
99635887 GCCGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCATACATGTCTTACACT
99635918 AGCTTACAAT
Statistics
Matches: 103, Mismatches: 13, Indels: 18
0.77 0.10 0.13
Matches are distributed among these distances:
45 2 0.02
46 57 0.55
47 25 0.24
48 19 0.18
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (45 bp):
GCCGATGCATGTCCCATACATGTCTTACACTGCACTCGTCTCAAG
Found at i:99644643 original size:68 final size:68
Alignment explanation
Indices: 99644493--99644650 Score: 160
Period size: 68 Copynumber: 2.3 Consensus size: 68
99644483 CTAGCCAATT
* * *
99644493 TATCTCGTAGCTCTCTTGTCTACATGGTGTCCTTCACTTGGAATCACACATGCGACCTAGCTACA
1 TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCAC-TCGAATCACACATGCGACCTAGCTACA
**
99644558 TTTA
65 CATA
* * *
99644562 TCTCTCCCGTAGCTCTCTTGTCTACATGG-GATACATC-C-CGTATCACACATGTGACCTAGCTA
1 TATCT--CGTAGCTCTCTTGTCTACATGGTG-TACATCACTCGAATCACACATGCGACCTAGCTA
99644624 CTACATA
63 C-ACATA
*
99644631 GTATCTCGTAGCTTTCTTGT
1 -TATCTCGTAGCTCTCTTGT
99644651 ACACATGATG
Statistics
Matches: 74, Mismatches: 10, Indels: 11
0.78 0.11 0.12
Matches are distributed among these distances:
68 35 0.47
69 7 0.09
70 6 0.08
71 26 0.35
ACGTcount: A:0.21, C:0.28, G:0.16, T:0.35
Consensus pattern (68 bp):
TATCTCGTAGCTCTCTTGTCTACATGGTGTACATCACTCGAATCACACATGCGACCTAGCTACAC
ATA
Found at i:99648899 original size:42 final size:42
Alignment explanation
Indices: 99648840--99648958 Score: 130
Period size: 43 Copynumber: 2.8 Consensus size: 42
99648830 GGGTTAGTTG
*
99648840 AGATTATGTGTAAGACCATATTTGGGATATGGCATCGATATA
1 AGATTATGTGTAAGACCATATCTGGGATATGGCATCGATATA
* * * * * *
99648882 AGATTTTGTGTAAGACCAAAGCTGGGCTATTAGCATCGATTTA
1 AGATTATGTGTAAGACCATATCTGGGATA-TGGCATCGATATA
****
99648925 AGATCCCATGTAAGACCATATCTGGGATATGGCA
1 AGATTATGTGTAAGACCATATCTGGGATATGGCA
99648959 ATAGTATGGT
Statistics
Matches: 61, Mismatches: 15, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
42 28 0.46
43 33 0.54
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.30
Consensus pattern (42 bp):
AGATTATGTGTAAGACCATATCTGGGATATGGCATCGATATA
Found at i:99648928 original size:43 final size:42
Alignment explanation
Indices: 99648840--99648928 Score: 106
Period size: 42 Copynumber: 2.1 Consensus size: 42
99648830 GGGTTAGTTG
* ** *
99648840 AGATTATGTGTAAGACCATATTTGGGATATGGCATCGATATA
1 AGATTATGTGTAAGACCAAAGCTGGGATATAGCATCGATATA
* * *
99648882 AGATTTTGTGTAAGACCAAAGCTGGGCTATTAGCATCGATTTA
1 AGATTATGTGTAAGACCAAAGCTGGGATA-TAGCATCGATATA
99648925 AGAT
1 AGAT
99648929 CCCATGTAAG
Statistics
Matches: 39, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
42 24 0.62
43 15 0.38
ACGTcount: A:0.33, C:0.11, G:0.24, T:0.33
Consensus pattern (42 bp):
AGATTATGTGTAAGACCAAAGCTGGGATATAGCATCGATATA
Found at i:99661185 original size:20 final size:20
Alignment explanation
Indices: 99661141--99661185 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
99661131 TGGGGGAAAG
*
99661141 AAGAAGAGAAAGTAAATGAA
1 AAGAAGAGAAAGAAAATGAA
*
99661161 GAGAAGAGAAAAGAAAAT-AA
1 AAGAAGAG-AAAGAAAATGAA
99661181 AAGAA
1 AAGAA
99661186 AAAGAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.24, T:0.07
Consensus pattern (20 bp):
AAGAAGAGAAAGAAAATGAA
Found at i:99661190 original size:16 final size:16
Alignment explanation
Indices: 99661164--99661197 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
99661154 AAATGAAGAG
99661164 AAGAGAAAAGAAAATAA
1 AAGAGAAAAGAAAA-AA
99661181 AAGA-AAAAGAAAAAA
1 AAGAGAAAAGAAAAAA
99661196 AA
1 AA
99661198 CTGAATCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 9 0.53
17 4 0.24
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (16 bp):
AAGAGAAAAGAAAAAA
Found at i:99662173 original size:51 final size:51
Alignment explanation
Indices: 99662026--99662162 Score: 175
Period size: 51 Copynumber: 2.7 Consensus size: 51
99662016 CTACCATCAA
* * *
99662026 ATCTCTAAGAATATAATATCATATCTTCTAAGATTCCATATCTTAGATAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
* * ** * * * *
99662077 ATATGTAATCTTATAAAATAATATCTTATAAGATTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
99662128 ATCTCTAAGATTATAATATCATATCTTCTAAGATT
1 ATCTCTAAGATTATAATATCATATCTTCTAAGATT
99662163 AGTTACCATA
Statistics
Matches: 68, Mismatches: 18, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
51 68 1.00
ACGTcount: A:0.40, C:0.14, G:0.07, T:0.39
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTCTAAGATTCCATATCATATATAAG
Found at i:99664415 original size:27 final size:26
Alignment explanation
Indices: 99664359--99664415 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
99664349 CAACCTTAAC
* *
99664359 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
99664385 CCTAGGGGTAAATCTGTAAATTTTTCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
99664412 CCTA
1 CCTA
99664416 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.18, G:0.18, T:0.37
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:99665634 original size:31 final size:31
Alignment explanation
Indices: 99665596--99665657 Score: 106
Period size: 31 Copynumber: 2.0 Consensus size: 31
99665586 ATGATTAGAA
*
99665596 AGTGGAGATGAGTAAAATAGCAGAAGGATTT
1 AGTGGAGATGAGTAAAATAGCAGAAAGATTT
*
99665627 AGTGGAGATGAGTAAAATAGTAGAAAGATTT
1 AGTGGAGATGAGTAAAATAGCAGAAAGATTT
99665658 GGCTATGGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.44, C:0.02, G:0.31, T:0.24
Consensus pattern (31 bp):
AGTGGAGATGAGTAAAATAGCAGAAAGATTT
Found at i:99665717 original size:20 final size:20
Alignment explanation
Indices: 99665673--99665717 Score: 56
Period size: 20 Copynumber: 2.2 Consensus size: 20
99665663 TGGGGGAAAG
*
99665673 AAGAAGAGAAAGTAAATGAA
1 AAGAAGAGAAAGAAAATGAA
*
99665693 GAGAAGAGAAAAGAAAAT-AA
1 AAGAAGAG-AAAGAAAATGAA
99665713 AAGAA
1 AAGAA
99665718 AAAGAAAAAA
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
20 13 0.62
21 8 0.38
ACGTcount: A:0.69, C:0.00, G:0.24, T:0.07
Consensus pattern (20 bp):
AAGAAGAGAAAGAAAATGAA
Found at i:99665722 original size:16 final size:16
Alignment explanation
Indices: 99665696--99665729 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
99665686 AAATGAAGAG
99665696 AAGAGAAAAGAAAATAA
1 AAGAGAAAAGAAAA-AA
99665713 AAGA-AAAAGAAAAAA
1 AAGAGAAAAGAAAAAA
99665728 AA
1 AA
99665730 CTGAATCCTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
15 4 0.24
16 9 0.53
17 4 0.24
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (16 bp):
AAGAGAAAAGAAAAAA
Found at i:99666673 original size:51 final size:51
Alignment explanation
Indices: 99666557--99666692 Score: 155
Period size: 51 Copynumber: 2.7 Consensus size: 51
99666547 CTACCATCAA
* * *
99666557 ATCTCTAAGAATATAATATCATATCTTCTAAGATTCCATATCTTAGATAAG
1 ATCTCTAAGATTATAATATCATATCTTATAAGATTCCATATCATAGATAAG
* * ** * * * **
99666608 ATATGTAATCTTATAAAATAATATCTTATAAGTTTCCATATCATATCTAAG
1 ATCTCTAAGATTATAATATCATATCTTATAAGATTCCATATCATAGATAAG
*
99666659 ATCTCTAAGATTATAATATCATATCTTTTAAGAT
1 ATCTCTAAGATTATAATATCATATCTTATAAGAT
99666693 CATGTTTCCA
Statistics
Matches: 65, Mismatches: 20, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
51 65 1.00
ACGTcount: A:0.40, C:0.13, G:0.07, T:0.40
Consensus pattern (51 bp):
ATCTCTAAGATTATAATATCATATCTTATAAGATTCCATATCATAGATAAG
Found at i:99667402 original size:15 final size:16
Alignment explanation
Indices: 99667368--99667402 Score: 56
Period size: 15 Copynumber: 2.3 Consensus size: 16
99667358 TTTTCCTATC
99667368 AAATAATAATTATTAT
1 AAATAATAATTATTAT
99667384 -AATAATAATT-TTAT
1 AAATAATAATTATTAT
99667398 AAATA
1 AAATA
99667403 TATCTAATCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
14 4 0.22
15 14 0.78
ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43
Consensus pattern (16 bp):
AAATAATAATTATTAT
Found at i:99669829 original size:27 final size:26
Alignment explanation
Indices: 99669773--99669829 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
99669763 CAACCTTAAC
* *
99669773 CCTAGGGGTATATCAGTAATTTTACT
1 CCTAGGGGTAAATCAGTAATTTTACA
* *
99669799 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTAGGGGTAAATCAGT-AATTTTACA
99669826 CCTA
1 CCTA
99669830 TAAAGGTATT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 15 0.58
27 11 0.42
ACGTcount: A:0.28, C:0.19, G:0.18, T:0.35
Consensus pattern (26 bp):
CCTAGGGGTAAATCAGTAATTTTACA
Found at i:99671082 original size:5 final size:5
Alignment explanation
Indices: 99671051--99671109 Score: 55
Period size: 5 Copynumber: 11.0 Consensus size: 5
99671041 GGCTATGGGG
* * *
99671051 GAAAA GAAGAA GAGAAA GTAAAT GAAGA GAAGA GAAAA GAAAA GAAAA
1 GAAAA GAA-AA GA-AAA G-AAAA GAAAA GAAAA GAAAA GAAAA GAAAA
99671099 GAAGAA GAAAA
1 GAA-AA GAAAA
99671110 AAATTGCATC
Statistics
Matches: 46, Mismatches: 4, Indels: 8
0.79 0.07 0.14
Matches are distributed among these distances:
5 29 0.63
6 15 0.33
7 2 0.04
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.03
Consensus pattern (5 bp):
GAAAA
Found at i:99671101 original size:20 final size:22
Alignment explanation
Indices: 99671051--99671109 Score: 77
Period size: 20 Copynumber: 2.7 Consensus size: 22
99671041 GGCTATGGGG
*
99671051 GAAAAGAAGAAGAGAAAGTAAAT
1 GAAAAGAAGAAGA-AAAGTAAAA
*
99671074 GAAGAGAAG-AGAAAAG-AAAA
1 GAAAAGAAGAAGAAAAGTAAAA
99671094 GAAAAGAAGAAGAAAA
1 GAAAAGAAGAAGAAAA
99671110 AAATTGCATC
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
20 11 0.34
21 10 0.31
22 3 0.09
23 8 0.25
ACGTcount: A:0.69, C:0.00, G:0.27, T:0.03
Consensus pattern (22 bp):
GAAAAGAAGAAGAAAAGTAAAA
Found at i:99672033 original size:15 final size:15
Alignment explanation
Indices: 99671996--99672024 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
99671986 TATTCCTATC
99671996 TAATAATAATAATTA
1 TAATAATAATAATTA
99672011 TAATAATAATAATT
1 TAATAATAATAATT
99672025 TTATAAATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (15 bp):
TAATAATAATAATTA
Found at i:99672138 original size:17 final size:19
Alignment explanation
Indices: 99672116--99672161 Score: 60
Period size: 19 Copynumber: 2.5 Consensus size: 19
99672106 ACATACATGC
99672116 AATAAT-ATTTT-TCTAAT
1 AATAATAATTTTATCTAAT
*
99672133 AATAATAATTTTATCTCAT
1 AATAATAATTTTATCTAAT
*
99672152 AATACTAATT
1 AATAATAATT
99672162 AAAATTTCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
17 6 0.24
18 5 0.20
19 14 0.56
ACGTcount: A:0.43, C:0.09, G:0.00, T:0.48
Consensus pattern (19 bp):
AATAATAATTTTATCTAAT
Found at i:99675094 original size:27 final size:28
Alignment explanation
Indices: 99674982--99675107 Score: 173
Period size: 28 Copynumber: 4.5 Consensus size: 28
99674972 CATGAGATTG
* * * *
99674982 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
* *
99675011 GCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTGATTATATA
99675039 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
99675067 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
99675094 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
99675108 GACTTAATAT
Statistics
Matches: 88, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 24 0.27
28 47 0.53
29 17 0.19
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:99675104 original size:55 final size:57
Alignment explanation
Indices: 99674982--99675107 Score: 184
Period size: 55 Copynumber: 2.2 Consensus size: 57
99674972 CATGAGATTG
* * *
99674982 GCACTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGCTTGATTATGTA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGCTTGATTATATA
* *
99675039 GCACTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGCTTGATTATATA
*
99675094 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
99675108 GACTTAATAT
Statistics
Matches: 63, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
55 23 0.37
56 22 0.35
57 18 0.29
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.32
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCGAGCTTGATTATATA
Found at i:99675118 original size:27 final size:27
Alignment explanation
Indices: 99675010--99675120 Score: 125
Period size: 28 Copynumber: 4.0 Consensus size: 27
99675000 TAAATTGTAC
* *
99675010 AGCACTAAGTGTGCGAGCTTGATTATGT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
99675038 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
99675066 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
99675093 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
99675120 A
1 A
99675121 CTTTTGAATC
Statistics
Matches: 76, Mismatches: 6, Indels: 3
0.89 0.07 0.04
Matches are distributed among these distances:
27 30 0.39
28 46 0.61
ACGTcount: A:0.29, C:0.13, G:0.26, T:0.32
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:99683165 original size:36 final size:35
Alignment explanation
Indices: 99683078--99683172 Score: 118
Period size: 36 Copynumber: 2.7 Consensus size: 35
99683068 AATATTTTGG
* * * *
99683078 TTCGCATGTTAAGCATGCTATTAATTTGATTTTGA
1 TTCGCATGTTAAGCATGCAATTATTTTCATTCTGA
* *
99683113 CTCGCATGTTAAGCATGCCATTATTTCTCATTCTGA
1 TTCGCATGTTAAGCATGCAATTATTT-TCATTCTGA
*
99683149 TTCGCATGTTAGGCATGCAATTAT
1 TTCGCATGTTAAGCATGCAATTAT
99683173 GTTAAATCGA
Statistics
Matches: 51, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
35 23 0.45
36 28 0.55
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.41
Consensus pattern (35 bp):
TTCGCATGTTAAGCATGCAATTATTTTCATTCTGA
Found at i:99688879 original size:79 final size:78
Alignment explanation
Indices: 99688777--99688999 Score: 265
Period size: 79 Copynumber: 2.8 Consensus size: 78
99688767 GCTCCTCGTT
* *
99688777 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAATTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGG-CTTAGCCCGG-TATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGG
*
99688842 ATTTAGTAACTCGCA
64 AATTAGTAACTCGCA
*
99688857 CAAATGCCTTCGGGCTTAGCCCGGAATTAGT-ATCTCGCACAAATGCCTTCGGG-CTTAGCCCGG
1 CAAATGCCTTCGGGCTTAGCCCGGTA-TAGTAAT-TCGCACAAATGCCTTCGGGACTTAGCCCGG
*
99688920 AATTAGTATCTCGCA
64 AATTAGTAACTCGCA
* * * * *
99688935 CAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCAC-AA-GCCTTCGGGACTTAGCCCG
1 CAAATGCCTTCGG-GCTTAGCCCGG-TATAGT-AATTCGCACAAATGCCTTCGGGACTTAGCCCG
99688998 GA
63 GA
99689000 CATCATTCAA
Statistics
Matches: 125, Mismatches: 11, Indels: 15
0.83 0.07 0.10
Matches are distributed among these distances:
78 47 0.38
79 57 0.46
80 20 0.16
81 1 0.01
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (78 bp):
CAAATGCCTTCGGGCTTAGCCCGGTATAGTAATTCGCACAAATGCCTTCGGGACTTAGCCCGGAA
TTAGTAACTCGCA
Found at i:99688894 original size:39 final size:40
Alignment explanation
Indices: 99688777--99688999 Score: 266
Period size: 39 Copynumber: 5.7 Consensus size: 40
99688767 GCTCCTCGTT
* *
99688777 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
99688817 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
99688857 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
99688896 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
99688935 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
99688976 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
99689000 CATCATTCAA
Statistics
Matches: 166, Mismatches: 9, Indels: 17
0.86 0.05 0.09
Matches are distributed among these distances:
38 2 0.01
39 89 0.54
40 64 0.39
41 11 0.07
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:99691706 original size:46 final size:45
Alignment explanation
Indices: 99691636--99691806 Score: 157
Period size: 46 Copynumber: 3.7 Consensus size: 45
99691626 GGGGTCAGGT
* *
99691636 GCCGATGCATGTCCCAAACATGTCTTCCACTGGCTTACGTCTTAAG
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTT-CGTCTTAAG
* * * *
99691682 GCTGATGCATGTCCCAGACATGTCTTACACTAGCACTCGTCTTAAT
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGC-TTCGTCTTAAG
* * ** **
99691728 GCCGATGCCATGGT-CTAGACATGGTCTTACACTGGCTCTCATGATGTG
1 GCCGATG-CAT-GTCCCAGACAT-GTCTTACACTGGCT-TCGTCTTAAG
99691776 GCCGATGCATG-CCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCC-AGACATGTCTTACACT
99691807 AGCTCACACA
Statistics
Matches: 101, Mismatches: 17, Indels: 14
0.77 0.13 0.11
Matches are distributed among these distances:
46 56 0.55
47 20 0.20
48 25 0.25
ACGTcount: A:0.22, C:0.29, G:0.21, T:0.29
Consensus pattern (45 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTTCGTCTTAAG
Found at i:99708675 original size:28 final size:28
Alignment explanation
Indices: 99708612--99708877 Score: 392
Period size: 28 Copynumber: 9.5 Consensus size: 28
99708602 ATTTTAAGTC
* *
99708612 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
99708639 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
99708667 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
99708695 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
99708723 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
99708751 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
*
99708779 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATCAAACT
*
99708807 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTACATAATCAAACT
* * *
99708835 CGCACACTTAGTGCTGTACA-ATTTAAACC
1 CGCACACTTAGTGC--TACATAATCAAACT
99708864 CGCACACTTAGTGC
1 CGCACACTTAGTGC
99708878 CAATCTCATG
Statistics
Matches: 221, Mismatches: 15, Indels: 4
0.92 0.06 0.02
Matches are distributed among these distances:
27 22 0.10
28 176 0.80
29 19 0.09
30 4 0.02
ACGTcount: A:0.32, C:0.28, G:0.14, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTACATAATCAAACT
Found at i:99710638 original size:32 final size:32
Alignment explanation
Indices: 99710597--99710662 Score: 123
Period size: 32 Copynumber: 2.1 Consensus size: 32
99710587 TACCTCATGC
99710597 TTAGCATATTGTTGGAAGAATTATCCTTAGAT
1 TTAGCATATTGTTGGAAGAATTATCCTTAGAT
*
99710629 TTAGCATATTTTTGGAAGAATTATCCTTAGAT
1 TTAGCATATTGTTGGAAGAATTATCCTTAGAT
99710661 TT
1 TT
99710663 GTGAATTCGA
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 33 1.00
ACGTcount: A:0.30, C:0.09, G:0.17, T:0.44
Consensus pattern (32 bp):
TTAGCATATTGTTGGAAGAATTATCCTTAGAT
Found at i:99712166 original size:14 final size:14
Alignment explanation
Indices: 99712149--99712201 Score: 56
Period size: 14 Copynumber: 3.8 Consensus size: 14
99712139 ACGTGTGTAG
99712149 TACTAAGTGTAGGC
1 TACTAAGTGTAGGC
*
99712163 TACTACGTGT-GTAG-
1 TACTAAGTGTAG--GC
99712177 TACTAAGTGTAGGC
1 TACTAAGTGTAGGC
*
99712191 TACTACGTGTA
1 TACTAAGTGTA
99712202 TCAGATGGTT
Statistics
Matches: 32, Mismatches: 3, Indels: 8
0.74 0.07 0.19
Matches are distributed among these distances:
13 2 0.06
14 28 0.88
15 2 0.06
ACGTcount: A:0.26, C:0.15, G:0.26, T:0.32
Consensus pattern (14 bp):
TACTAAGTGTAGGC
Found at i:99712171 original size:28 final size:28
Alignment explanation
Indices: 99712139--99712246 Score: 131
Period size: 28 Copynumber: 4.1 Consensus size: 28
99712129 AACTTCGATC
99712139 ACGTGTGTAGTACTAAGTGTAGGCTACT
1 ACGTGTGTAGTACTAAGTGTAGGCTACT
99712167 ACGTGTGTAGTACTAAGTGTAGGCTACT
1 ACGTGTGTAGTACTAAGTGTAGGCTACT
* *
99712195 ACGTGTATCAG-A-T-GGT-TAGG-T-C-
1 ACGTGTGT-AGTACTAAGTGTAGGCTACT
*
99712217 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGTAGGCTACT
99712245 AC
1 AC
99712247 ATGTACCAGA
Statistics
Matches: 67, Mismatches: 5, Indels: 16
0.76 0.06 0.18
Matches are distributed among these distances:
21 2 0.03
22 8 0.12
23 2 0.03
24 3 0.04
25 7 0.10
26 3 0.04
27 2 0.03
28 38 0.57
29 2 0.03
ACGTcount: A:0.25, C:0.16, G:0.29, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGTAGGCTACT
Found at i:99712226 original size:50 final size:49
Alignment explanation
Indices: 99712167--99712307 Score: 183
Period size: 49 Copynumber: 2.9 Consensus size: 49
99712157 GTAGGCTACT
* * **
99712167 ACGTGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTC
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTC
* *
99712217 ACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTGGTT
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTC
* * * *
99712266 GCATGTGTAGTACTAAGTGCAGGCTACTATGTGTACTAGATA
1 ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATA
99712308 GCTTTGGCTA
Statistics
Matches: 80, Mismatches: 11, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
49 40 0.50
50 40 0.50
ACGTcount: A:0.27, C:0.15, G:0.27, T:0.31
Consensus pattern (49 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTC
Found at i:99712241 original size:78 final size:79
Alignment explanation
Indices: 99712091--99712246 Score: 215
Period size: 78 Copynumber: 2.0 Consensus size: 79
99712081 TACGGTCGCA
* * *
99712091 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGATAACTTCGATCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACGTGTGTAGTACTAAG
*
99712156 TGTAGGCTACTACG
66 TGCAGGCTACTACG
* * * ** *
99712170 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGAT-GGTTAGGTCACGTGTGTAGTACTAAG
1 TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACGTGTGTAGTACTAAG
99712234 TGCAGGCTACTAC
66 TGCAGGCTACTAC
99712247 ATGTACCAGA
Statistics
Matches: 67, Mismatches: 10, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
78 34 0.51
79 33 0.49
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (79 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGCGTACCAGATAACTTAGATCACGTGTGTAGTACTAAG
TGCAGGCTACTACG
Found at i:99712285 original size:49 final size:50
Alignment explanation
Indices: 99712170--99712294 Score: 171
Period size: 50 Copynumber: 2.5 Consensus size: 50
99712160 GGCTACTACG
* * * ** *
99712170 TGTGTAGTACTAAGTGTAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTAGGTCACA
**
99712220 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATT-GGTTGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTAGGTCACA
99712269 TGTGTAGTACTAAGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
99712295 TGTGTACTAG
Statistics
Matches: 67, Mismatches: 8, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
49 30 0.45
50 37 0.55
ACGTcount: A:0.26, C:0.15, G:0.27, T:0.31
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACATGTACCAGATAATTAGGTCACA
Found at i:99714393 original size:51 final size:51
Alignment explanation
Indices: 99714333--99714434 Score: 195
Period size: 51 Copynumber: 2.0 Consensus size: 51
99714323 TGATTCAGAG
99714333 TCAAATAAAAAGTGAAGTCAAGGTGAAATTTTCCTTGGGTATTGTCTTAAT
1 TCAAATAAAAAGTGAAGTCAAGGTGAAATTTTCCTTGGGTATTGTCTTAAT
*
99714384 TCAAATAAAAAGTGAAGTCAAGGTGAATTTTTCCTTGGGTATTGTCTTAAT
1 TCAAATAAAAAGTGAAGTCAAGGTGAAATTTTCCTTGGGTATTGTCTTAAT
99714435 CAATCAGTTT
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.34, C:0.10, G:0.20, T:0.36
Consensus pattern (51 bp):
TCAAATAAAAAGTGAAGTCAAGGTGAAATTTTCCTTGGGTATTGTCTTAAT
Found at i:99719708 original size:18 final size:18
Alignment explanation
Indices: 99719667--99719710 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
99719657 TGTTTAAAGA
*
99719667 CTTTTTATTTTTATTTTC
1 CTTTTTATATTTATTTTC
*
99719685 CCTTTTATATTTATTTATC
1 CTTTTTATATTTATTT-TC
*
99719704 TTTTTTA
1 CTTTTTA
99719711 AGTACTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 14 0.67
19 7 0.33
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (18 bp):
CTTTTTATATTTATTTTC
Found at i:99719741 original size:25 final size:26
Alignment explanation
Indices: 99719694--99719751 Score: 68
Period size: 26 Copynumber: 2.3 Consensus size: 26
99719684 CCCTTTTATA
*
99719694 TTTA-TTTATCTTTTTTAAGTACT-T
1 TTTATTTTATCTTATTTAAGTACTAT
99719718 TTTATTTTATCTTCATTTAA-TACTAT
1 TTTATTTTATCTT-ATTTAAGTACTAT
*
99719744 TTCATTTT
1 TTTATTTT
99719752 TAGGTTTTAT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
24 4 0.14
25 12 0.41
26 13 0.45
ACGTcount: A:0.22, C:0.10, G:0.02, T:0.66
Consensus pattern (26 bp):
TTTATTTTATCTTATTTAAGTACTAT
Found at i:99729673 original size:43 final size:43
Alignment explanation
Indices: 99729625--99729783 Score: 148
Period size: 43 Copynumber: 3.7 Consensus size: 43
99729615 AGCTTATACA
* *
99729625 ATGCCAACGACCCAGACGTGGTCTTACATGTAATCAAATATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
* *
99729668 ATGCC-ACTGTCCTAGA--TAGCGTCTTACACGAAATCAAATAT-G
1 ATGCCAAC-GTCCCAGACGT-G-GTCTTACACGTAATCAAATATCG
* * * *
99729710 ATACGAACGTCCCAGACATGGTCTTACACGTCAATCATAAT-TCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT-AATCA-AATATCG
* *
99729754 ATGCCAACGTCTCAGATGTGGTCTTACACG
1 ATGCCAACGTCCCAGACGTGGTCTTACACG
99729784 AAAACACATA
Statistics
Matches: 93, Mismatches: 14, Indels: 17
0.75 0.11 0.14
Matches are distributed among these distances:
41 1 0.01
42 24 0.26
43 39 0.42
44 29 0.31
ACGTcount: A:0.31, C:0.26, G:0.18, T:0.25
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAATATCG
Found at i:99736411 original size:35 final size:36
Alignment explanation
Indices: 99736372--99736457 Score: 104
Period size: 36 Copynumber: 2.4 Consensus size: 36
99736362 TTTTGGTTTG
* *
99736372 CATGTTAAGCATGCTATTAATTT-T-ATTTTGACTCA
1 CATGTTAAGCATGCCATT-ATTTCTCATTCTGACTCA
* *
99736407 CATGTTAAGCATGCCATTATTTCTCATTCTGATTCC
1 CATGTTAAGCATGCCATTATTTCTCATTCTGACTCA
*
99736443 CATGTTAGGCATGCC
1 CATGTTAAGCATGCC
99736458 CAGCCATCAT
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
34 4 0.09
35 18 0.41
36 22 0.50
ACGTcount: A:0.24, C:0.21, G:0.14, T:0.41
Consensus pattern (36 bp):
CATGTTAAGCATGCCATTATTTCTCATTCTGACTCA
Found at i:99737357 original size:40 final size:40
Alignment explanation
Indices: 99737302--99737383 Score: 164
Period size: 40 Copynumber: 2.0 Consensus size: 40
99737292 AATGTTTTAA
99737302 TTGAAGTAGGGTGTTTTCTGAAAAATATCAGAACTTGAGT
1 TTGAAGTAGGGTGTTTTCTGAAAAATATCAGAACTTGAGT
99737342 TTGAAGTAGGGTGTTTTCTGAAAAATATCAGAACTTGAGT
1 TTGAAGTAGGGTGTTTTCTGAAAAATATCAGAACTTGAGT
99737382 TT
1 TT
99737384 TCTAAATATA
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 42 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.37
Consensus pattern (40 bp):
TTGAAGTAGGGTGTTTTCTGAAAAATATCAGAACTTGAGT
Found at i:99737779 original size:29 final size:29
Alignment explanation
Indices: 99737744--99737799 Score: 94
Period size: 29 Copynumber: 1.9 Consensus size: 29
99737734 TCTATACACC
*
99737744 GTGAAACTTTAAATTCTGAAAACTATATT
1 GTGAAACTCTAAATTCTGAAAACTATATT
*
99737773 GTGAAACTCTAGATTCTGAAAACTATA
1 GTGAAACTCTAAATTCTGAAAACTATA
99737800 GATACTTGTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 25 1.00
ACGTcount: A:0.41, C:0.12, G:0.12, T:0.34
Consensus pattern (29 bp):
GTGAAACTCTAAATTCTGAAAACTATATT
Found at i:99752499 original size:18 final size:18
Alignment explanation
Indices: 99752476--99752587 Score: 197
Period size: 18 Copynumber: 6.2 Consensus size: 18
99752466 TTCACACGTC
99752476 CTGGTGACACGGGCGTGT
1 CTGGTGACACGGGCGTGT
99752494 CTGGTGACACGGGCGTGT
1 CTGGTGACACGGGCGTGT
*
99752512 CTGGTGACACGGGTGTGT
1 CTGGTGACACGGGCGTGT
*
99752530 CTGGTGACATGGGCGTGT
1 CTGGTGACACGGGCGTGT
99752548 CTGGTGACACGGGCGTGT
1 CTGGTGACACGGGCGTGT
*
99752566 CTGGTGACACGGGTGTGT
1 CTGGTGACACGGGCGTGT
99752584 CTGG
1 CTGG
99752588 CTCACACGGC
Statistics
Matches: 89, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 89 1.00
ACGTcount: A:0.11, C:0.20, G:0.45, T:0.25
Consensus pattern (18 bp):
CTGGTGACACGGGCGTGT
Found at i:99754506 original size:94 final size:94
Alignment explanation
Indices: 99754358--99754530 Score: 231
Period size: 94 Copynumber: 1.8 Consensus size: 94
99754348 TTGTATATAG
* * * * *
99754358 CGAGGCTGATGTATGTCCCAGAGATGTCTTACACTAGCTCTCGTCTCAATGCCGATGCATGCCCC
1 CGAGGCTGAAGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAATGCCGATGCATGCCCC
99754423 AAACATGTATTACATTGGCTTAAATATCT
66 AAACATGTATTACATTGGCTTAAATATCT
* ** *
99754452 CGAGGCTGAAGCATGTCTCAGACATGTCTTACACTAGCTCTCATAT-TGTGGCCGATGCATGTCC
1 CGAGGCTGAAGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAAT-GCCGATGCATGCCC
* *
99754516 CAGACATGTCTTACA
65 CAAACATGTATTACA
99754531 CTAGCACACA
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
93 1 0.01
94 66 0.99
ACGTcount: A:0.25, C:0.26, G:0.20, T:0.29
Consensus pattern (94 bp):
CGAGGCTGAAGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCAATGCCGATGCATGCCCC
AAACATGTATTACATTGGCTTAAATATCT
Found at i:99754520 original size:46 final size:47
Alignment explanation
Indices: 99754365--99754535 Score: 159
Period size: 46 Copynumber: 3.7 Consensus size: 47
99754355 TAGCGAGGCT
* * * * **
99754365 GATGTATGTCCCAGAGATGTCTTACACTAGCTCTCGTCTCAAT-GCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTGTGGCC
* * * * * * * *
99754411 GATGCATGCCCCAAACATGTATTACATTGGCT-TAAATATCTCGAGGCT
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCT-CATATCT-GTGGCC
* *
99754459 GAAGCATGTCTCAGACATGTCTTACACTAGCTCTCATAT-TGTGGCC
1 GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTGTGGCC
99754505 GATGCATGTCCCAGACATGTCTTACACTAGC
1 GATGCATGTCCCAGACATGTCTTACACTAGC
99754536 ACACAAATGA
Statistics
Matches: 95, Mismatches: 26, Indels: 8
0.74 0.20 0.06
Matches are distributed among these distances:
45 1 0.01
46 61 0.64
47 1 0.01
48 31 0.33
49 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.19, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGTCTTACACTAGCTCTCATATCTGTGGCC
Found at i:99758003 original size:28 final size:27
Alignment explanation
Indices: 99757951--99758003 Score: 63
Period size: 28 Copynumber: 1.9 Consensus size: 27
99757941 ACCACAATTT
**
99757951 GGGCCTATGCCCTTTCAGTTTCAGTTA
1 GGGCCTATGCCCTTTCAGTAACAGTTA
99757978 GGGCCT-TAGCCCATTTCAGTAACAGT
1 GGGCCTAT-GCCC-TTTCAGTAACAGT
99758004 AGCAGTCTGG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
26 1 0.05
27 10 0.45
28 11 0.50
ACGTcount: A:0.19, C:0.26, G:0.23, T:0.32
Consensus pattern (27 bp):
GGGCCTATGCCCTTTCAGTAACAGTTA
Found at i:99758478 original size:27 final size:27
Alignment explanation
Indices: 99758392--99758465 Score: 112
Period size: 27 Copynumber: 2.7 Consensus size: 27
99758382 TACACATCGT
* *
99758392 AGGGCAAATCAGTCATTTTACCTTACA
1 AGGGTAAAACAGTCATTTTACCTTACA
99758419 AGGGTAAAACAGTCATTTTACCTTACA
1 AGGGTAAAACAGTCATTTTACCTTACA
* *
99758446 GGGGTAATACAGTCATTTTA
1 AGGGTAAAACAGTCATTTTA
99758466 TCCTATATGG
Statistics
Matches: 43, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
27 43 1.00
ACGTcount: A:0.34, C:0.18, G:0.18, T:0.31
Consensus pattern (27 bp):
AGGGTAAAACAGTCATTTTACCTTACA
Found at i:99758489 original size:27 final size:27
Alignment explanation
Indices: 99758459--99758564 Score: 131
Period size: 27 Copynumber: 3.9 Consensus size: 27
99758449 GTAATACAGT
* **
99758459 CATTTTATCCTATATGGGTATTTCGGC
1 CATTTTACCCTATGGGGGTATTTCGGC
* **
99758486 CATTTTGCCCTATGGGGGTATTTCGAT
1 CATTTTACCCTATGGGGGTATTTCGGC
*
99758513 CATTTTACCCTATGGGGGTATTTCGGT
1 CATTTTACCCTATGGGGGTATTTCGGC
* *
99758540 TATTTCACCCTATGGGGGTATTTCG
1 CATTTTACCCTATGGGGGTATTTCG
99758565 ATCACCATTT
Statistics
Matches: 69, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 69 1.00
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.42
Consensus pattern (27 bp):
CATTTTACCCTATGGGGGTATTTCGGC
Found at i:99758504 original size:54 final size:54
Alignment explanation
Indices: 99758446--99758568 Score: 131
Period size: 54 Copynumber: 2.3 Consensus size: 54
99758436 TTACCTTACA
* * **
99758446 GGGGTAATAC-AGTCATTTTATCCTATATGGGTATTTCGGCCATTTTGCCCTATG
1 GGGGTAATACGA-TCATTTTACCCTATAGGGGTATTTCGGCCATTTCACCCTATG
* * * **
99758500 GGGGTATTTCGATCATTTTACCCTATGGGGGTATTTCGGTTATTTCACCCTATG
1 GGGGTAATACGATCATTTTACCCTATAGGGGTATTTCGGCCATTTCACCCTATG
* *
99758554 GGGGTATTTCGATCA
1 GGGGTAATACGATCA
99758569 CCATTTTGGC
Statistics
Matches: 59, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 58 0.98
55 1 0.02
ACGTcount: A:0.19, C:0.18, G:0.24, T:0.39
Consensus pattern (54 bp):
GGGGTAATACGATCATTTTACCCTATAGGGGTATTTCGGCCATTTCACCCTATG
Found at i:99770392 original size:40 final size:40
Alignment explanation
Indices: 99770325--99770691 Score: 535
Period size: 40 Copynumber: 9.2 Consensus size: 40
99770315 CCTTCAGAAT
* * *
99770325 TTAG-CCGGATATAGCT-ACTTGCTCAAATGCCTTCAGGAC
1 TTAGCCCGGATATAG-TAACTCGCACAAATGCCTTCGGGAC
* *
99770364 TTAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
99770404 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
99770444 TTAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
99770484 TTAGCCCGGATATAGTAACTCGCACAAATGCCATCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
99770524 TTAGCCCGGATTTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
*
99770564 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCAGGAC
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* * *
99770604 TTAGCCCGGTTATCGTAACTTGCACAAATGCCTTCGGG-C
1 TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
* *
99770643 TTAGCCCGGA-ATTAGTCACTAGCACAAATGCCTTCGGGAC
1 TTAGCCCGGATA-TAGTAACTCGCACAAATGCCTTCGGGAC
99770683 TTAGCCCGG
1 TTAGCCCGG
99770692 TTATCATCCG
Statistics
Matches: 298, Mismatches: 26, Indels: 7
0.90 0.08 0.02
Matches are distributed among these distances:
38 1 0.00
39 38 0.13
40 259 0.87
ACGTcount: A:0.27, C:0.27, G:0.22, T:0.24
Consensus pattern (40 bp):
TTAGCCCGGATATAGTAACTCGCACAAATGCCTTCGGGAC
Found at i:99772488 original size:75 final size:75
Alignment explanation
Indices: 99772364--99772513 Score: 255
Period size: 75 Copynumber: 2.0 Consensus size: 75
99772354 ACAAATCATC
* *
99772364 AATACGGGGTAACAGATATTTATTCTTTATTGTCACTTTATTCAGCTGACGATAGTCGATGCACA
1 AATACGCGGTAACAGATATTTATTCTTTATTGTCACTTTATTCAACTGACGATAGTCGATGCACA
99772429 ACCTCATGGT
66 ACCTCATGGT
*
99772439 AATACGCGGTAACGGATATTTATTCTTTATTGTCACTTTATTCAACTGACGATAGTCGATGCACA
1 AATACGCGGTAACAGATATTTATTCTTTATTGTCACTTTATTCAACTGACGATAGTCGATGCACA
**
99772504 GTCTCATGGT
66 ACCTCATGGT
99772514 TCCGTCCTTC
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
75 70 1.00
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (75 bp):
AATACGCGGTAACAGATATTTATTCTTTATTGTCACTTTATTCAACTGACGATAGTCGATGCACA
ACCTCATGGT
Found at i:99776110 original size:40 final size:40
Alignment explanation
Indices: 99776033--99776654 Score: 1158
Period size: 40 Copynumber: 15.6 Consensus size: 40
99776023 AAACCAAGTA
* * * *
99776033 CCTTCGGAATTTAG-CCGGATATAGCT-ACTTGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
*
99776072 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776112 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776152 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776192 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776232 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
99776272 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776312 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
*
99776352 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776392 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776432 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776472 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776512 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776552 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776592 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
99776632 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
99776655 CATCCGAATA
Statistics
Matches: 571, Mismatches: 10, Indels: 3
0.98 0.02 0.01
Matches are distributed among these distances:
39 13 0.02
40 558 0.98
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:99789792 original size:43 final size:43
Alignment explanation
Indices: 99789700--99789896 Score: 251
Period size: 43 Copynumber: 4.7 Consensus size: 43
99789690 CGGATGATAT
* *
99789700 CCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATAC
*
99789740 CCGGGCTAAGTCCTGAAGGCATTTGTGCGAGTAGTTGCTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATAC
* * *
99789783 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACT-ATATCAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAG-TTGCTAT-AC
*
99789826 CCGGGCTAAGTCCCGAAGGCATTTGTACGAGTAGTTGCTATAC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATAC
* * *
99789869 CTGGGCAAAGTCCTGAAGGCATTTGTGC
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC
99789897 TAGTGACTAT
Statistics
Matches: 135, Mismatches: 15, Indels: 11
0.84 0.09 0.07
Matches are distributed among these distances:
40 27 0.20
41 1 0.01
42 4 0.03
43 99 0.73
44 4 0.03
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (43 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCTATAC
Found at i:99789863 original size:86 final size:84
Alignment explanation
Indices: 99789700--99789926 Score: 350
Period size: 86 Copynumber: 2.7 Consensus size: 84
99789690 CGGATGATAT
* * *
99789700 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATAT-CCGGGCTAAGTCCTGAAGGCATTT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGGCTAAGTCCCGAAGGCATTT
*
99789764 GTGCGAGTAGTTGCTATAC
66 GTACGAGTAGTTGCTATAC
99789783 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCACCCGGGCTAAGTCCCGAAGGCAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATAT--CCCGGGCTAAGTCCCGAAGGCAT
99789848 TTGTACGAGTAGTTGCTATAC
64 TTGTACGAGTAGTTGCTATAC
* * * *
99789869 CTGGGCAAAGTCCTGAAGGCATTTGTGCTAGTGACTATATCCC-GGCTAAATCCCGAAG
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGGCTAAGTCCCGAAG
99789927 ATACTTGGGT
Statistics
Matches: 133, Mismatches: 8, Indels: 6
0.90 0.05 0.04
Matches are distributed among these distances:
83 52 0.39
84 3 0.02
86 78 0.59
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (84 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTATATCCCGGGCTAAGTCCCGAAGGCATTT
GTACGAGTAGTTGCTATAC
Found at i:99799157 original size:40 final size:40
Alignment explanation
Indices: 99799097--99799524 Score: 770
Period size: 40 Copynumber: 10.7 Consensus size: 40
99799087 GAGCATTGGA
*
99799097 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
99799137 ATATGTCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
99799177 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
99799217 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
99799257 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
99799297 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
99799337 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
99799377 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
99799417 ATATATCCGGGCTAAGACCCGAAGGCAA-T-TGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
99799455 ATATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 --ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
99799497 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
99799525 ATGTGTTTGC
Statistics
Matches: 376, Mismatches: 8, Indels: 8
0.96 0.02 0.02
Matches are distributed among these distances:
38 8 0.02
39 1 0.00
40 359 0.95
41 1 0.00
42 7 0.02
ACGTcount: A:0.31, C:0.20, G:0.27, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:99808068 original size:40 final size:40
Alignment explanation
Indices: 99808013--99808240 Score: 411
Period size: 40 Copynumber: 5.7 Consensus size: 40
99808003 GAGCATTGGA
99808013 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
99808053 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
99808093 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
99808133 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTA
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
99808173 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCAAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
99808213 ATATGTCCGGGTTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
99808241 ATGTGTTTGC
Statistics
Matches: 183, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 183 1.00
ACGTcount: A:0.32, C:0.20, G:0.26, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:99812353 original size:40 final size:40
Alignment explanation
Indices: 99812272--99812453 Score: 278
Period size: 40 Copynumber: 4.6 Consensus size: 40
99812262 CAACCAAGTA
** * *
99812272 CCTTCGGGGTTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGTTATAG-TAACTCGCACAAATG
*
99812311 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAATTG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
99812351 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATA
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
99812391 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
*
99812431 CCTTCGGGGCTTAGCCCGGTTAT
1 CCTTCGGGACTTAGCCCGGTTAT
99812454 CATCCGAATA
Statistics
Matches: 132, Mismatches: 9, Indels: 3
0.92 0.06 0.02
Matches are distributed among these distances:
39 13 0.10
40 119 0.90
ACGTcount: A:0.22, C:0.27, G:0.24, T:0.27
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
Found at i:99819231 original size:39 final size:40
Alignment explanation
Indices: 99819116--99819294 Score: 206
Period size: 40 Copynumber: 4.5 Consensus size: 40
99819106 GCTACTCGTT
* *
99819116 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATT-TAGTAACTCGCA
99819156 CAAATGCCTTCGGGACTTA-ACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGA-CCGGATTTAGTAACTCGCA
* *
99819196 CCAATGCCTTCGGG-CTTAGACCGGAATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
* * * * *
99819235 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGACCGGATTTAGTAAC-TCGCA
99819276 CAAA-GCCTTCGGGACTTAG
1 CAAATGCCTTCGGGACTTAG
99819295 CCCAGACATC
Statistics
Matches: 121, Mismatches: 11, Indels: 14
0.83 0.08 0.10
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 74 0.61
41 13 0.11
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGACCGGATTTAGTAACTCGCA
Found at i:99819284 original size:79 final size:80
Alignment explanation
Indices: 99819116--99819294 Score: 204
Period size: 79 Copynumber: 2.2 Consensus size: 80
99819106 GCTACTCGTT
* * *
99819116 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAA-GCCTTCGGGACTTAGACCGGAAT-TAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
* *
99819180 GATTTAGTAACTCGCAC
64 GATATAGTAACTAGCAC
* **
99819197 CAATGCCTTCGGG-CTTAGACCGGAATTAGTAACTCGCACAAATGCCTTC-GGATCTTAGTCCGG
1 CAAAGCCTTCGGGACTTAGACCGGAATTAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCCGG
* *
99819260 ATATGGTCACTTAGCA-
65 ATATAGTAAC-TAGCAC
99819276 CAAAGCCTTCGGGACTTAG
1 CAAAGCCTTCGGGACTTAG
99819295 CCCAGACATC
Statistics
Matches: 83, Mismatches: 11, Indels: 9
0.81 0.11 0.09
Matches are distributed among these distances:
78 3 0.04
79 58 0.70
80 19 0.23
81 3 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (80 bp):
CAAAGCCTTCGGGACTTAGACCGGAATTAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGGA
TATAGTAACTAGCAC
Found at i:99820497 original size:56 final size:56
Alignment explanation
Indices: 99820430--99820549 Score: 231
Period size: 56 Copynumber: 2.1 Consensus size: 56
99820420 TATTAGTTTA
99820430 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
*
99820486 TTGCCCATGCTTCTTATTTTATTTTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
99820542 TTGCCCAT
1 TTGCCCAT
99820550 CATCCCTTGT
Statistics
Matches: 63, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 63 1.00
ACGTcount: A:0.23, C:0.23, G:0.09, T:0.45
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:99827662 original size:40 final size:40
Alignment explanation
Indices: 99827480--99827702 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
99827470 TCCTCGTTCA
* * * * *
99827480 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
99827519 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
99827559 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
99827599 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* ** * * * *
99827639 AAGGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
99827679 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
99827703 CAGCATTCAA
Statistics
Matches: 160, Mismatches: 20, Indels: 7
0.86 0.11 0.04
Matches are distributed among these distances:
39 37 0.23
40 115 0.72
41 8 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:99827711 original size:41 final size:41
Alignment explanation
Indices: 99827634--99827711 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
99827624 TTAGTATCTC
* * *
99827634 GCACAAAGGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
99827675 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAAGGCCTTC-GGATCTTAGCCCGGACA-CATTCA
99827712 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (41 bp):
GCACAAAGGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:99835027 original size:40 final size:40
Alignment explanation
Indices: 99834936--99835107 Score: 195
Period size: 40 Copynumber: 4.3 Consensus size: 40
99834926 GCTCCTCGTT
* * * *
99834936 CAAATGCCTTCGGGGCATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
99834976 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
99835015 CGAATGCCTTCGGGACTTAACCCGGTTTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * *
99835055 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGG-ATTTAGTAACTCGCA
99835095 CAAATGCCTTCGG
1 CAAATGCCTTCGG
99835108 ATCTTAGTCC
Statistics
Matches: 114, Mismatches: 16, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
39 33 0.29
40 78 0.68
41 3 0.03
ACGTcount: A:0.24, C:0.28, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:99835169 original size:41 final size:41
Alignment explanation
Indices: 99835092--99835169 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
99835082 TTTGTATCTC
* * *
99835092 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
99835133 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
99835170 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:99836573 original size:79 final size:82
Alignment explanation
Indices: 99836462--99836646 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
99836452 GCTACTCGTT
* *
99836462 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
99836525 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* * **
99836542 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
99836605 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
99836622 CAAA-GCCTTCGGGACATAGCCCGGA
1 CAAATGCCTTCGGGACATAGCCCGGA
99836647 CATCATTCAA
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.60
80 33 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (82 bp):
CAAATGCCTTCGGGACATAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:99836646 original size:40 final size:40
Alignment explanation
Indices: 99836443--99836646 Score: 220
Period size: 40 Copynumber: 5.1 Consensus size: 40
99836433 CGGAATTTAA
** *
99836443 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
99836483 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
99836523 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
99836562 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * * *
99836602 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACATAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
99836642 CCGGA
1 CCGGA
99836647 CATCATTCAA
Statistics
Matches: 138, Mismatches: 19, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 91 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:99838532 original size:40 final size:40
Alignment explanation
Indices: 99838341--99838525 Score: 207
Period size: 40 Copynumber: 4.7 Consensus size: 40
99838331 TTGAATGATG
* * * *
99838341 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
** * *
99838381 TCCGAACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
99838421 TTCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
99838460 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
*
99838501 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
99838526 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 34 0.28
40 77 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.22, G:0.27, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:99838547 original size:79 final size:79
Alignment explanation
Indices: 99838394--99838558 Score: 183
Period size: 79 Copynumber: 2.1 Consensus size: 79
99838384 GAACTAAGAT
* ** **
99838394 CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
* *
99838459 ATCCGGGTTAAGTC
66 ATCCCGGTTAAATC
* *
99838473 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
99838536 TATA-CCCGGTTAAATT
63 TAAATCCCGGTTAAATC
99838552 CCGAAGG
1 CCGAAGG
99838559 TACGTGATTT
Statistics
Matches: 72, Mismatches: 11, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
78 2 0.03
79 48 0.67
80 22 0.31
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCCGGTTAAATC
Found at i:99842728 original size:24 final size:23
Alignment explanation
Indices: 99842685--99842731 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 23
99842675 TTTATGGTCT
99842685 AAAATTTCACGGAATGATTTTGAG
1 AAAATTTCACGGAA-GATTTTGAG
99842709 AAAATTTCATTCGGAA-ATTTTGA
1 AAAATTTCA--CGGAAGATTTTGA
99842732 CGTTTGGGCA
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
24 16 0.76
26 5 0.24
ACGTcount: A:0.38, C:0.09, G:0.17, T:0.36
Consensus pattern (23 bp):
AAAATTTCACGGAAGATTTTGAG
Found at i:99844532 original size:13 final size:13
Alignment explanation
Indices: 99844514--99844552 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
99844504 TCTTCACTAA
99844514 AGAATTCGGATAC
1 AGAATTCGGATAC
**
99844527 AGAATTCATTATAC
1 AGAATTC-GGATAC
99844541 AGAATTCGGATA
1 AGAATTCGGATA
99844553 ACCTTTTTTT
Statistics
Matches: 21, Mismatches: 4, Indels: 2
0.78 0.15 0.07
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.41, C:0.13, G:0.18, T:0.28
Consensus pattern (13 bp):
AGAATTCGGATAC
Found at i:99845413 original size:53 final size:53
Alignment explanation
Indices: 99845344--99845538 Score: 142
Period size: 53 Copynumber: 3.6 Consensus size: 53
99845334 TTCCTTTTTA
* * * *
99845344 AACTTACCATTTCCATGTCTTGACATGGTCTTACGTG-GTATCCTTGCCTTATG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGAG-ATCCTTGCCTTATG
* *
99845397 AACTCACCATTGCCATGCCTTGGCATGGTCTTACATGAGATCTTTGCCTTATCG
1 AACTCACCATTGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTAT-G
** * * * * * ** * *
99845451 TAGTTTATCAATGCCATGTCTCGACAT-GTCTTACATGATTTCCTTGCCTTGTAA
1 -AACTCACCATTGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTAT-G
* * * * *
99845505 AACTTACCAATACCATGCCTTGGCATGATCTTAC
1 AACTCACCATTGCCATGCCTTGACATGGTCTTAC
99845539 TTGGTATGCT
Statistics
Matches: 110, Mismatches: 28, Indels: 7
0.76 0.19 0.05
Matches are distributed among these distances:
53 63 0.57
54 29 0.26
55 18 0.16
ACGTcount: A:0.22, C:0.26, G:0.16, T:0.36
Consensus pattern (53 bp):
AACTCACCATTGCCATGCCTTGACATGGTCTTACATGAGATCCTTGCCTTATG
Found at i:99848275 original size:19 final size:19
Alignment explanation
Indices: 99848251--99848288 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
99848241 GCTAAGATAG
99848251 AACCATCATCCAATAAGGT
1 AACCATCATCCAATAAGGT
99848270 AACCATCATCCAATAAGGT
1 AACCATCATCCAATAAGGT
99848289 TAAACTAGTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.42, C:0.26, G:0.11, T:0.21
Consensus pattern (19 bp):
AACCATCATCCAATAAGGT
Found at i:99851567 original size:61 final size:61
Alignment explanation
Indices: 99851448--99851567 Score: 172
Period size: 60 Copynumber: 2.0 Consensus size: 61
99851438 TTATTCAGAA
* *
99851448 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGT
1 ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT
* *
99851509 ATCAGAG-TATACTGGGCC-TAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACA
1 ATCAGAGTTA-ACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTACA
99851568 AGTTGAGATC
Statistics
Matches: 53, Mismatches: 4, Indels: 4
0.87 0.07 0.07
Matches are distributed among these distances:
60 33 0.62
61 20 0.38
ACGTcount: A:0.28, C:0.27, G:0.19, T:0.27
Consensus pattern (61 bp):
ATCAGAGTTAACTGGGCCTTAGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT
Found at i:99851593 original size:60 final size:60
Alignment explanation
Indices: 99851448--99851596 Score: 169
Period size: 60 Copynumber: 2.5 Consensus size: 60
99851438 TTATTCAGAA
* *
99851448 ATCAGAGT-TAACTGGGCCTTAGCCCATATCAATATTAATCTGGGCCATAGCCCCTTACAGT
1 ATCAGAGTAT-ACTGGGCCTT-GCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT
* * *
99851509 ATCAGAGTATACTGGGCCTAGCCCATATCAGTATCAATCTGGGCCGTAGCCCTATTACAAGT
1 ATCAGAGTATACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCC-ATTAC-AGT
* * *
99851571 -TGAGA-TCTATTGGGCCTTGCCCATAT
1 ATCAGAGTATACTGGGCCTTGCCCATAT
99851597 TAACACAGTT
Statistics
Matches: 76, Mismatches: 9, Indels: 7
0.83 0.10 0.08
Matches are distributed among these distances:
60 47 0.62
61 25 0.33
62 4 0.05
ACGTcount: A:0.26, C:0.26, G:0.20, T:0.28
Consensus pattern (60 bp):
ATCAGAGTATACTGGGCCTTGCCCATATCAATATCAATCTGGGCCATAGCCCATTACAGT
Found at i:99851614 original size:20 final size:20
Alignment explanation
Indices: 99851589--99851634 Score: 60
Period size: 20 Copynumber: 2.4 Consensus size: 20
99851579 ATTGGGCCTT
99851589 GCCCATATT-AACACAGTTGG
1 GCCCATATTCAACACAGTT-G
*
99851609 GCCCAT-TTCAATACAGTTG
1 GCCCATATTCAACACAGTTG
99851628 GCCCATA
1 GCCCATA
99851635 ACAAAATAGT
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
19 9 0.39
20 14 0.61
ACGTcount: A:0.28, C:0.28, G:0.17, T:0.26
Consensus pattern (20 bp):
GCCCATATTCAACACAGTTG
Found at i:99852317 original size:24 final size:24
Alignment explanation
Indices: 99852273--99852319 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
99852263 CTGTCAGGAG
** *
99852273 AGGATTTAGGAGTTGATAAGGGAT
1 AGGATTTAGGAGCAGACAAGGGAT
99852297 AGGATTTAGGAGCAGACAAGGGA
1 AGGATTTAGGAGCAGACAAGGGA
99852320 GGAAATCTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.36, C:0.04, G:0.38, T:0.21
Consensus pattern (24 bp):
AGGATTTAGGAGCAGACAAGGGAT
Found at i:99853776 original size:27 final size:26
Alignment explanation
Indices: 99853736--99853847 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
99853726 AGGAAGCGTC
*
99853736 CTGGTGGCTATGCCACAATTATCTGAT
1 CTGGTGGCTCTGCCAC-ATTATCTGAT
*
99853763 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACAT-TATCTGAT
*
99853790 CTGGTGGTTCTGCCACGATTATCTGTAT
1 CTGGTGGCTCTGCCAC-ATTATCTG-AT
* * *
99853818 CTGGTGACTCTGTCACATTATCTGTT
1 CTGGTGGCTCTGCCACATTATCTGAT
99853844 CTGG
1 CTGG
99853848 CAGCCAGGCT
Statistics
Matches: 74, Mismatches: 8, Indels: 7
0.83 0.09 0.08
Matches are distributed among these distances:
26 7 0.09
27 51 0.69
28 16 0.22
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (26 bp):
CTGGTGGCTCTGCCACATTATCTGAT
Found at i:99853840 original size:54 final size:54
Alignment explanation
Indices: 99853736--99853847 Score: 163
Period size: 54 Copynumber: 2.1 Consensus size: 54
99853726 AGGAAGCGTC
*
99853736 CTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
* * * *
99853790 CTGGTGGTTCTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTT
1 CTGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTT
99853844 CTGG
1 CTGG
99853848 CAGCCAGGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 2
0.88 0.08 0.03
Matches are distributed among these distances:
54 34 0.65
55 18 0.35
ACGTcount: A:0.16, C:0.23, G:0.23, T:0.38
Consensus pattern (54 bp):
CTGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTT
Found at i:99859276 original size:54 final size:54
Alignment explanation
Indices: 99859213--99859391 Score: 206
Period size: 54 Copynumber: 3.3 Consensus size: 54
99859203 ATTTCCATGT
99859213 CTTGACATGGTCTTACATGATTTTCTTACCTTGTAAAACTTACTAATGCTATGC
1 CTTGACATGGTCTTACATGATTTTCTTACCTTGTAAAACTTACTAATGCTATGC
* * ** * *
99859267 CTTGGCATGGTCTTACATGGGATCTTTGCCTTA--TCGT--AGTTTA-TCAATGCCATGT
1 CTTGACATGGTCTTACAT--GAT-TTT--CTTACCTTGTAAAACTTACT-AATGCTATGC
99859322 CTTGACATGGTCTTACATGATTTTCTTACCTTGTAAAACTTACTAATGCTATGC
1 CTTGACATGGTCTTACATGATTTTCTTACCTTGTAAAACTTACTAATGCTATGC
*
99859376 CTTGGCATGGTCTTAC
1 CTTGACATGGTCTTAC
99859392 TTGGTATCCT
Statistics
Matches: 101, Mismatches: 13, Indels: 22
0.74 0.10 0.16
Matches are distributed among these distances:
50 4 0.04
52 6 0.06
53 3 0.03
54 45 0.45
55 30 0.30
56 3 0.03
57 6 0.06
59 4 0.04
ACGTcount: A:0.22, C:0.21, G:0.17, T:0.40
Consensus pattern (54 bp):
CTTGACATGGTCTTACATGATTTTCTTACCTTGTAAAACTTACTAATGCTATGC
Found at i:99860735 original size:50 final size:50
Alignment explanation
Indices: 99860616--99860904 Score: 226
Period size: 50 Copynumber: 5.7 Consensus size: 50
99860606 ATTGTAAGAA
* * * ** *
99860616 CACATGTCTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGT-TTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTG--TACTA-GGTAGTTAGGT
*
99860668 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGGTAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGGTAGTTAGGT
** * ** ** ** * * *
99860718 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCCGACAACTTCGAT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAG-GTAGTTAGGT
* * *
99860769 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTA-TCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACT-AGGTAGTTAGGT
* * * * * *
99860819 CACGTGTGTAGTACTTAGTGCAGGCTACTACATGTAC-CGG-ATTTTTGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGGTA-GTTAGGT
* *
99860868 CACATGTGTAGTAGTAAGTGCAGGCTACTATGTGTAC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
99860905 CAGATAGCTT
Statistics
Matches: 186, Mismatches: 46, Indels: 13
0.76 0.19 0.05
Matches are distributed among these distances:
49 41 0.22
50 79 0.42
51 36 0.19
52 30 0.16
ACGTcount: A:0.24, C:0.17, G:0.27, T:0.32
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGGTAGTTAGGT
Found at i:99860909 original size:99 final size:100
Alignment explanation
Indices: 99860660--99860911 Score: 303
Period size: 101 Copynumber: 2.5 Consensus size: 100
99860650 TTTAAGATGG
* * **
99860660 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACTAGGTAGTTAGGTTGCATGT
1 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGT
99860725 GTAGTACTAAGTGCAGGCTACTATGCATACCCGACA
66 GTAGTACTAAGTGCAGGCTACTATG-ATACCCGACA
** * * * * *
99860761 ACTTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACGTGT
1 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGT
* *
99860826 GTAGTACTTAGTGCAGGCTACTACATG-TA-CCG-GA
66 GTAGTACTAAGTGCAGGCTACT--ATGATACCCGACA
* * * *
99860860 TTTTTGGTCACATGTGTAGTAGTAAGTGCAGGCTACTATGTGTACCAGATAG
1 TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
99860912 CTTCGATTAC
Statistics
Matches: 127, Mismatches: 22, Indels: 6
0.82 0.14 0.04
Matches are distributed among these distances:
99 44 0.35
100 3 0.02
101 77 0.61
103 3 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (100 bp):
TTTTAGGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGTCACATGT
GTAGTACTAAGTGCAGGCTACTATGATACCCGACA
Found at i:99860940 original size:150 final size:152
Alignment explanation
Indices: 99860624--99860943 Score: 385
Period size: 150 Copynumber: 2.1 Consensus size: 152
99860614 AACACATGTC
* * *
99860624 TAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGTCACGTGTGTAGTACTAAGTGC
1 TAGTAATATGTGCAGGCTACTACGTGTATAAGATGG-TTTAGGTCACGTGTGTAGTACTAAGTGC
* **
99860689 AGGCTACTACGTGTACTAGGTAGTTAGGTTGCATGTGTAGTACTAAGTGCAGGCTACTATGCATA
65 AGGCTACTACATGTACTAGGTAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA
* ** *
99860754 CCCGACAACTTCGATCACGTGTG
130 CCAGACAACTTCGATCACAAGGG
* * * *
99860777 TAGTACTAAGTGCAGGCTACTACGTGTATCAGATGG-TTAGGTCACGTGTGTAGTACTTAGTGCA
1 TAGTAATATGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAGTGCA
* * * * **
99860841 GGCTACTACATGTAC-CGG-ATTTTTGGTCACATGTGTAGTAGTAAGTGCAGGCTACTATGTGTA
66 GGCTACTACATGTACTAGGTA-GTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATA
* * *
99860904 CCAGATAGCTTCGATTACAAGGG
130 CCAGACAACTTCGATCACAAGGG
*
99860927 TGGTAATATGTGCAGGC
1 TAGTAATATGTGCAGGC
99860944 AACCGTGTAT
Statistics
Matches: 142, Mismatches: 24, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
149 1 0.01
150 68 0.48
151 41 0.29
153 32 0.23
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.31
Consensus pattern (152 bp):
TAGTAATATGTGCAGGCTACTACGTGTATAAGATGGTTTAGGTCACGTGTGTAGTACTAAGTGCA
GGCTACTACATGTACTAGGTAGTTAGGTCACATGTGTAGTACTAAGTGCAGGCTACTATGCATAC
CAGACAACTTCGATCACAAGGG
Found at i:99866387 original size:21 final size:21
Alignment explanation
Indices: 99866361--99866401 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 21
99866351 CTTTATTCAG
*
99866361 CTGTCTATAGTTAATACACAA
1 CTGTCTACAGTTAATACACAA
99866382 CTGTCTACAGTTAATACACA
1 CTGTCTACAGTTAATACACA
99866402 TTCTCATCGT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (21 bp):
CTGTCTACAGTTAATACACAA
Found at i:99872969 original size:49 final size:48
Alignment explanation
Indices: 99872690--99872969 Score: 162
Period size: 49 Copynumber: 5.8 Consensus size: 48
99872680 TGTGTGTGCT
* * *
99872690 AGTGTAAGACCTGTCTGGGACATGGTATCGGTAC-TGATAG-ATGAGAGCC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-G-ACTTGAT-GTATGAAAGTC
* * * * * * * *
99872739 AATGTAACACCTGTTTGGGACACGGCATCGACCTCAAGATATGCAAG-C
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTGATG-TATGAAAGTC
* * * * *
99872787 TAGTGTAAGACTTGTCTGGGACATGGCATCGGCTTGA-G-GTG--TGTT
1 -AGTGTAAGACCTGTCTGGGACATGGCATCGACTTGATGTATGAAAGTC
* * * * * ** * * *
99872832 AGTGTAAGACCTATTTGGGACACGACATCAAC-ACATATAAGCAAGAGAC
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTTGATGTATG-AA-AGTC
* *
99872881 AGTGTAAAACCTGTCTGGGACATGGCATCAGCCTTGATGTATGAAAGTC
1 AGTGTAAGACCTGTCTGGGACATGGCATC-GACTTGATGTATGAAAGTC
*
99872930 AGTGTAAGACCTGTTTGGGACATGGCATCGACTTAGATGT
1 AGTGTAAGACCTGTCTGGGACATGGCATCGACTT-GATGT
99872970 GAGAGCTAGT
Statistics
Matches: 167, Mismatches: 50, Indels: 28
0.68 0.20 0.11
Matches are distributed among these distances:
43 1 0.01
44 26 0.16
45 1 0.01
46 2 0.01
47 3 0.02
48 9 0.05
49 117 0.70
50 3 0.02
51 5 0.03
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (48 bp):
AGTGTAAGACCTGTCTGGGACATGGCATCGACTTGATGTATGAAAGTC
Found at i:99886785 original size:49 final size:50
Alignment explanation
Indices: 99886715--99886963 Score: 223
Period size: 49 Copynumber: 5.0 Consensus size: 50
99886705 TAATATGGTT
* *
99886715 TTAGGTCACATGTGTAGTACTAAATGCAGGCTACTA-GTGTACCAGATAG
1 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * ** * * *
99886764 TTAGGTTGCATGTGTAGTACTAAGTGTAGGCTACTATGCATACCCGACAAC
1 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAG
* * * * ** *
99886815 TTCGATCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGG
1 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * * *
99886865 TTAGGTCACGTGTTTAGTACTAAGTGCAAGCTACTACGTGTACCGGATTG
1 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
* * * * *
99886915 TT-GGTCGCATGTGTGGTACTTAGTGCAGGCTACTATGCGTACTAGATAG
1 TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
99886964 CTTCGGTTGC
Statistics
Matches: 155, Mismatches: 43, Indels: 4
0.77 0.21 0.02
Matches are distributed among these distances:
49 68 0.44
50 51 0.33
51 36 0.23
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (50 bp):
TTAGGTCGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
Found at i:99886868 original size:101 final size:100
Alignment explanation
Indices: 99886720--99886900 Score: 254
Period size: 101 Copynumber: 1.8 Consensus size: 100
99886710 TGGTTTTAGG
**
99886720 TCACATGTGTAGTACTAAATGCAGGCTACTAGTGTACCAGATAGTTAGGTTGCATGTGTAGTACT
1 TCACATGTGTAGTACTAAATGCAGGCTACTAGTGTACCAGATAGTTAGGTCACATGTGTAGTACT
* *
99886785 AAGTGTAGGCTACTATGCATACCCGACAACTTCGA
66 AAGTGCAAGCTACTATGCATACCCGACAACTTCGA
* * ** * * *
99886820 TCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATTAGATGGTTAGGTCACGTGTTTAGTAC
1 TCACATGTGTAGTACTAAATGCAGGCTACTA-GTGTACCAGATAGTTAGGTCACATGTGTAGTAC
99886885 TAAGTGCAAGCTACTA
65 TAAGTGCAAGCTACTA
99886901 CGTGTACCGG
Statistics
Matches: 69, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
100 29 0.42
101 40 0.58
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (100 bp):
TCACATGTGTAGTACTAAATGCAGGCTACTAGTGTACCAGATAGTTAGGTCACATGTGTAGTACT
AAGTGCAAGCTACTATGCATACCCGACAACTTCGA
Found at i:99887182 original size:16 final size:15
Alignment explanation
Indices: 99887161--99887190 Score: 51
Period size: 16 Copynumber: 1.9 Consensus size: 15
99887151 GAATGGAGTA
99887161 AGTGAAATTATGTAAG
1 AGTGAAATT-TGTAAG
99887177 AGTGAAATTTGTAA
1 AGTGAAATTTGTAA
99887191 TAAAACAGTT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 5 0.36
16 9 0.64
ACGTcount: A:0.43, C:0.00, G:0.23, T:0.33
Consensus pattern (15 bp):
AGTGAAATTTGTAAG
Found at i:99889712 original size:40 final size:40
Alignment explanation
Indices: 99889668--99889744 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
99889658 TTAGTGCCAC
* *
99889668 ATATAGCCGAAGCTAT-TCCAATTCGCACACTAAGTGCTAT
1 ATATAGCCAAAGCTATCTCCAA-ACGCACACTAAGTGCTAT
*
99889708 ATATAGCCAAAGCTATCTCGAAACGCACACTAAGTGC
1 ATATAGCCAAAGCTATCTCCAAACGCACACTAAGTGC
99889745 CAAACGTAGT
Statistics
Matches: 33, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
40 29 0.88
41 4 0.12
ACGTcount: A:0.35, C:0.26, G:0.16, T:0.23
Consensus pattern (40 bp):
ATATAGCCAAAGCTATCTCCAAACGCACACTAAGTGCTAT
Found at i:99895845 original size:46 final size:48
Alignment explanation
Indices: 99895613--99895975 Score: 172
Period size: 46 Copynumber: 7.7 Consensus size: 48
99895603 AGGGTGTAAT
* * *
99895613 GCCGATGCCATGTCCCAGACATAGTCTTACACTGGC-T-CATC-CATCAA
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGACTTACATCTCAT-AG
** * * ** *
99895660 GTTGATGCCATGTCCCAAACATGGTTTTACACTGAC-TATCAAAATC-GAG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGACTTA-C-ATCTCATAG
* ** * * * *
99895709 GCTGACACAATGTCCCAGACATCGTATTACACTGGTTCTCACATCTCCAT--
1 GCCGATGC-ATGTCCCAGACATGGTCTTACACT-G-ACTTACATCT-CATAG
* * *
99895759 GCTGATGCCATGTCCTAGACATGGTCTTACACTAAC--ACATCTCATA-
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGACTTACATCTCATAG
99895805 GCCGATGCATGTCCCAGACAT-GTCTTACACTGACTTACATCTCA-AG
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGACTTACATCTCATAG
* * * *
99895851 GCCGATGCATGTCCCAAACAT-GTTTTACACT-AGCTCT-CGTCTCA-AT
1 GCCGATGCATGTCCCAGACATGGTCTTACACTGA-CT-TACATCTCATAG
* * * * *
99895897 GTCGTTGCCATGTCCCAAACATGGTCTTACACTGGC-T-C-TCGTAATATG
1 GCCGATG-CATGTCCCAGACATGGTCTTACACTGACTTACATC-TCATA-G
* *
99895945 GCTGATGCATGTCCTAGACAT-GTCTTACACT
1 GCCGATGCATGTCCCAGACATGGTCTTACACT
99895976 AGCGCACAAA
Statistics
Matches: 247, Mismatches: 46, Indels: 47
0.73 0.14 0.14
Matches are distributed among these distances:
44 12 0.05
45 20 0.08
46 77 0.31
47 59 0.24
48 16 0.06
49 27 0.11
50 30 0.12
51 5 0.02
52 1 0.00
ACGTcount: A:0.26, C:0.29, G:0.17, T:0.28
Consensus pattern (48 bp):
GCCGATGCATGTCCCAGACATGGTCTTACACTGACTTACATCTCATAG
Found at i:99895935 original size:48 final size:46
Alignment explanation
Indices: 99895805--99895975 Score: 175
Period size: 46 Copynumber: 3.7 Consensus size: 46
99895795 ACATCTCATA
* * *
99895805 GCCGATGCATGTCCCAGACATGTCTTACACTGACT-TACATCTCAAG
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCT-CGTCTCAAG
* * *
99895851 GCCGATGCATGTCCCAAACATGTTTTACACTAGCTCTCGTCTCAAT
1 GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAAG
* * * *
99895897 GTCGTTGCCATGTCCCAAACATGGTCTTACACTGGCTCTCGTAAT-ATG
1 GCCGATG-CATGTCCCAAACAT-GTCTTACACTGGCTCTCGT-CTCAAG
* * *
99895945 GCTGATGCATGTCCTAGACATGTCTTACACT
1 GCCGATGCATGTCCCAAACATGTCTTACACT
99895976 AGCGCACAAA
Statistics
Matches: 103, Mismatches: 18, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
46 53 0.51
47 27 0.26
48 22 0.21
49 1 0.01
ACGTcount: A:0.23, C:0.29, G:0.18, T:0.30
Consensus pattern (46 bp):
GCCGATGCATGTCCCAAACATGTCTTACACTGGCTCTCGTCTCAAG
Done.