Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 296 of 297
Found at i:100533065 original size:48 final size:48
Alignment explanation
Indices: 100532947--100533128 Score: 197
Period size: 48 Copynumber: 3.8 Consensus size: 48
100532937 CATGTCAATT
* * ***
100532947 CCATGTTCCAAACATGGTCTTACACTGGCTTTCATATATCGGGGCCGATG
1 CCATGTTCCAAACATGGTCTTACACTAGC--TCACATATAAAGGCCGATG
* ** *
100532997 CCATGTTCCAAACATGGTCTTACACTAG-TCCACATGTCGAGGCCAATG
1 CCATGTTCCAAACATGGTCTTACACTAGCT-CACATATAAAGGCCGATG
* * *
100533045 CCATG-TCTCAGACATGGTCTTACACTAGCTCTCATATAAATGCCGATG
1 CCATGTTC-CAAACATGGTCTTACACTAGCTCACATATAAAGGCCGATG
*
100533093 CCATGTTCCAAACATGGTCTTACACTAGCTTACATA
1 CCATGTTCCAAACATGGTCTTACACTAGCTCACATA
100533129 ACCCTAGTAT
Statistics
Matches: 113, Mismatches: 15, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
47 3 0.03
48 80 0.71
49 3 0.03
50 27 0.24
ACGTcount: A:0.26, C:0.27, G:0.18, T:0.29
Consensus pattern (48 bp):
CCATGTTCCAAACATGGTCTTACACTAGCTCACATATAAAGGCCGATG
Found at i:100541550 original size:40 final size:40
Alignment explanation
Indices: 100541476--100541697 Score: 313
Period size: 40 Copynumber: 5.6 Consensus size: 40
100541466 AACCCAAGTA
* * *
100541476 CCTTCGGGATTTAG-CCGGATAT-AGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAA-TAGCACAAATG
* * *
100541515 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
100541555 CCTTCGGGACTTAGCCCAGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
100541595 TCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
* *
100541635 CCTTCGGGACTTAGCCCGGATATAATCACTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
*
100541675 CCTTCGGGACTTAACCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
100541698 CATTCGAATA
Statistics
Matches: 163, Mismatches: 18, Indels: 3
0.89 0.10 0.02
Matches are distributed among these distances:
39 12 0.07
40 148 0.91
41 3 0.02
ACGTcount: A:0.30, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAATG
Found at i:100550036 original size:40 final size:40
Alignment explanation
Indices: 100549962--100550097 Score: 195
Period size: 40 Copynumber: 3.4 Consensus size: 40
100549952 AACCCAAGTA
* *
100549962 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAATG
* *
100550001 CCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAAAG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
* *
100550041 CCTTCGGGACTTAGCCCGGATATAATCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
100550081 CCTTCGGGACTTAGCCC
1 CCTTCGGGACTTAGCCC
100550098 NNNNNNNNNN
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 12 0.14
40 72 0.83
41 3 0.03
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAATG
Found at i:100559775 original size:24 final size:24
Alignment explanation
Indices: 100559676--100559776 Score: 150
Period size: 24 Copynumber: 4.2 Consensus size: 24
100559666 AAGTCTGTCA
*
100559676 GGAGAGGATTTAGGAGTTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
100559700 GGATAGGATTTAGGAG-TGGATAAG
1 GGAGAGGATTTAGGAGCT-GATAAG
*
100559724 GGATAGGATTTAGGAGCTGATAAG
1 GGAGAGGATTTAGGAGCTGATAAG
*
100559748 GGAGAGGATTTAGGAGCTGATTAG
1 GGAGAGGATTTAGGAGCTGATAAG
100559772 GGAGA
1 GGAGA
100559777 ACAAGGTCGG
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
23 1 0.01
24 70 0.97
25 1 0.01
ACGTcount: A:0.33, C:0.02, G:0.42, T:0.24
Consensus pattern (24 bp):
GGAGAGGATTTAGGAGCTGATAAG
Found at i:100561221 original size:27 final size:27
Alignment explanation
Indices: 100561181--100561291 Score: 152
Period size: 27 Copynumber: 4.1 Consensus size: 27
100561171 AGGAAGCGTC
* * *
100561181 CTGGTGGCTATGCCACATTTATTTGAT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
100561208 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
*
100561235 CTGGTGGCTCTGCCACAATTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
* *
100561262 CTGGTGACTCTGTCACA-TTATCTGTT
1 CTGGTGGCTCTGCCACATTTATCTGTT
100561288 CTGG
1 CTGG
100561292 CAGCAATGCT
Statistics
Matches: 76, Mismatches: 8, Indels: 1
0.89 0.09 0.01
Matches are distributed among these distances:
26 13 0.17
27 63 0.83
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
CTGGTGGCTCTGCCACATTTATCTGTT
Found at i:100565823 original size:45 final size:45
Alignment explanation
Indices: 100565759--100565848 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
100565749 TCGAGGTAGA
100565759 AAAATTTATTTTATTATTATTTTGAGGTTCATGATATGATTGCAT
1 AAAATTTATTTTATTATTATTTTGAGGTTCATGATATGATTGCAT
*
100565804 AAAATTTATTTTATTATTATTTTGAGGTTTATGATATGATTGCAT
1 AAAATTTATTTTATTATTATTTTGAGGTTCATGATATGATTGCAT
100565849 GATTGTGTGA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.31, C:0.03, G:0.13, T:0.52
Consensus pattern (45 bp):
AAAATTTATTTTATTATTATTTTGAGGTTCATGATATGATTGCAT
Found at i:100567048 original size:48 final size:46
Alignment explanation
Indices: 100566952--100567048 Score: 124
Period size: 48 Copynumber: 2.1 Consensus size: 46
100566942 ACAGGATAGA
* *
100566952 AATGAGCCATGTAAGTCCATATCAGATATATGGCTTGGGAGATAGG
1 AATGAGCCATGTAAGCCCATATCAGATATATGGCTTGGGAGACAGG
* *
100566998 AATGAGCCATGTAAGCCCATAGTATATATATATGGCATT-GGAGACAGG
1 AATGAGCCATGTAAGCCCATA-T-CAGATATATGGC-TTGGGAGACAGG
100567046 AAT
1 AAT
100567049 AATTCATGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 4
0.85 0.08 0.08
Matches are distributed among these distances:
46 20 0.45
47 1 0.02
48 21 0.48
49 2 0.05
ACGTcount: A:0.35, C:0.13, G:0.26, T:0.26
Consensus pattern (46 bp):
AATGAGCCATGTAAGCCCATATCAGATATATGGCTTGGGAGACAGG
Found at i:100567190 original size:58 final size:58
Alignment explanation
Indices: 100567100--100567214 Score: 212
Period size: 58 Copynumber: 2.0 Consensus size: 58
100567090 TATGGATAGA
*
100567100 CAGGAACGACCCTAGCATCCTTACTATTCCGAGTGGTTCAACGGGTCATTGTACACGC
1 CAGGAACGACCCTAGCATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACGC
*
100567158 CAGGAACGACCCTAGTATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACG
1 CAGGAACGACCCTAGCATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACG
100567215 TTAAATTACA
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
58 55 1.00
ACGTcount: A:0.24, C:0.28, G:0.23, T:0.24
Consensus pattern (58 bp):
CAGGAACGACCCTAGCATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACGC
Found at i:100571484 original size:46 final size:48
Alignment explanation
Indices: 100571412--100571514 Score: 147
Period size: 46 Copynumber: 2.2 Consensus size: 48
100571402 GACAGGACAG
* * *
100571412 GACAGAAATGAGCCATGTAAGTCCATA-T-CAGATATATGGCTTTGGA
1 GACAGGAATGAGCCATGTAAGCCCATAGTACAGATATATGGCATTGGA
* *
100571458 GACAGGAATGAGCCATGTAAGCCCATAGTATATATATATGGCATTGGA
1 GACAGGAATGAGCCATGTAAGCCCATAGTACAGATATATGGCATTGGA
100571506 GACAGGAAT
1 GACAGGAAT
100571515 AATTCATGTA
Statistics
Matches: 50, Mismatches: 5, Indels: 2
0.88 0.09 0.04
Matches are distributed among these distances:
46 25 0.50
47 1 0.02
48 24 0.48
ACGTcount: A:0.36, C:0.15, G:0.25, T:0.24
Consensus pattern (48 bp):
GACAGGAATGAGCCATGTAAGCCCATAGTACAGATATATGGCATTGGA
Found at i:100571665 original size:63 final size:63
Alignment explanation
Indices: 100571566--100571691 Score: 216
Period size: 63 Copynumber: 2.0 Consensus size: 63
100571556 TATTGATAGA
* * *
100571566 CAGGAACGACCCTAGTATCCTTACTATTCCGAGTGGTTCAATGGGTCATTGTAGACGCTAAAT
1 CAGGAACGACCCTAGTATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACGCTAAAT
*
100571629 CAGGAACGACCCTAGTATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACGTTAAAT
1 CAGGAACGACCCTAGTATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACGCTAAAT
100571692 TACAGTGAAT
Statistics
Matches: 59, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
63 59 1.00
ACGTcount: A:0.27, C:0.23, G:0.22, T:0.28
Consensus pattern (63 bp):
CAGGAACGACCCTAGTATCCTTACTATTCCGAGTGGTGCAACGGGTCATTGTACACGCTAAAT
Found at i:100575604 original size:91 final size:91
Alignment explanation
Indices: 100575441--100575623 Score: 321
Period size: 91 Copynumber: 2.0 Consensus size: 91
100575431 GCGAAGTGAC
* *
100575441 AGAGAAAAAGCATTAGGAAGCCCCGTTTGAACCTTAGGAATGTTAGGATATTGGGGTTGACAGGA
1 AGAGAAAAAGCATTAGGAAGCCCCGTTTGAACCTTAGGAATGTTAGGATATTAGGGTTGACAAGA
*
100575506 CAAGACAGGACAGAAATGAGCCATGT
66 CAAGACAGGAAAGAAATGAGCCATGT
*
100575532 AGAGAAAAAGCATTAGGAAGCCCTGTTTGAACCTTAGGAATGTTAGGATATTAGGGTTGACAAGA
1 AGAGAAAAAGCATTAGGAAGCCCCGTTTGAACCTTAGGAATGTTAGGATATTAGGGTTGACAAGA
*
100575597 CAGGACAGGAAAGAAATGAGCCATGT
66 CAAGACAGGAAAGAAATGAGCCATGT
100575623 A
1 A
100575624 AGTCCATATA
Statistics
Matches: 87, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
91 87 1.00
ACGTcount: A:0.38, C:0.13, G:0.29, T:0.20
Consensus pattern (91 bp):
AGAGAAAAAGCATTAGGAAGCCCCGTTTGAACCTTAGGAATGTTAGGATATTAGGGTTGACAAGA
CAAGACAGGAAAGAAATGAGCCATGT
Found at i:100575700 original size:45 final size:46
Alignment explanation
Indices: 100575611--100575704 Score: 145
Period size: 45 Copynumber: 2.1 Consensus size: 46
100575601 ACAGGAAAGA
* *
100575611 AATGAGCCATGTAAGTCCATATAAGATATACGGCTTTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATAAGATATACGGCATTGGAGACAGG
* *
100575657 AATGAGCCATGTAAGCCCATAT-ATATATATGGCATTGGAGACAGG
1 AATGAGCCATGTAAGCCCATATAAGATATACGGCATTGGAGACAGG
100575702 AAT
1 AAT
100575705 AATTCATGTA
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
45 23 0.52
46 21 0.48
ACGTcount: A:0.36, C:0.15, G:0.24, T:0.24
Consensus pattern (46 bp):
AATGAGCCATGTAAGCCCATATAAGATATACGGCATTGGAGACAGG
Found at i:100575713 original size:45 final size:46
Alignment explanation
Indices: 100575615--100575721 Score: 144
Period size: 45 Copynumber: 2.3 Consensus size: 46
100575605 GAAAGAAATG
* *
100575615 AGCCATGTAAGTCCATATAAGATATACGGCTTTGGAGACAGGAATG
1 AGCCATGTAAGTCCATATAAGATATACGGCATTGGAGACAGGAATA
* * *
100575661 AGCCATGTAAGCCCATAT-ATATATATGGCATTGGAGACAGGAATA
1 AGCCATGTAAGTCCATATAAGATATACGGCATTGGAGACAGGAATA
**
100575706 ATTCATGTAAGTCCAT
1 AGCCATGTAAGTCCAT
100575722 GTCGAAGACA
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
45 36 0.68
46 17 0.32
ACGTcount: A:0.36, C:0.16, G:0.22, T:0.26
Consensus pattern (46 bp):
AGCCATGTAAGTCCATATAAGATATACGGCATTGGAGACAGGAATA
Found at i:100581373 original size:24 final size:24
Alignment explanation
Indices: 100581275--100581374 Score: 155
Period size: 24 Copynumber: 4.2 Consensus size: 24
100581265 AGTCTGTCAA
*
100581275 GAGAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
* *
100581299 GATAGGATTTAGGAGTTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
100581323 GATAGGATTTAGGAGCTGATAAGG
1 GAGAGGATTTAGGAGCTGATAAGG
*
100581347 GAGAGGATTTAGGAGCTGATTAGG
1 GAGAGGATTTAGGAGCTGATAAGG
100581371 GAGA
1 GAGA
100581375 ACAGTGTTGG
Statistics
Matches: 72, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 72 1.00
ACGTcount: A:0.33, C:0.02, G:0.40, T:0.25
Consensus pattern (24 bp):
GAGAGGATTTAGGAGCTGATAAGG
Found at i:100582865 original size:54 final size:53
Alignment explanation
Indices: 100582779--100582884 Score: 158
Period size: 54 Copynumber: 2.0 Consensus size: 53
100582769 GGAGGAAGCG
* *
100582779 TCCTAGTGGCTATGCCACATTTATCTGATCTGGTGGCTCTGCCACATATATCTA
1 TCCTAGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACAT-TATCTA
* * *
100582833 TCCTAGTGGCTCTGCCACAATTATCTGTTCTGGTGACTCTGTCACATTATCT
1 TCCTAGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCT
100582885 GTTCTGGCAG
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
53 5 0.11
54 42 0.89
ACGTcount: A:0.19, C:0.26, G:0.18, T:0.37
Consensus pattern (53 bp):
TCCTAGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATTATCTA
Found at i:100582886 original size:26 final size:26
Alignment explanation
Indices: 100582784--100582891 Score: 126
Period size: 27 Copynumber: 4.0 Consensus size: 26
100582774 AAGCGTCCTA
* *
100582784 GTGGCTATGCCACATTTATCTGATCTG
1 GTGGCTCTGCCACA-TTATCTGTTCTG
* * *
100582811 GTGGCTCTGCCACATATATCTATCCTA
1 GTGGCTCTGCCACAT-TATCTGTTCTG
100582838 GTGGCTCTGCCACAATTATCTGTTCTG
1 GTGGCTCTGCCAC-ATTATCTGTTCTG
* *
100582865 GTGACTCTGTCACATTATCTGTTCTG
1 GTGGCTCTGCCACATTATCTGTTCTG
100582891 G
1 G
100582892 CAGTAATGCT
Statistics
Matches: 69, Mismatches: 10, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
26 15 0.22
27 52 0.75
28 2 0.03
ACGTcount: A:0.18, C:0.25, G:0.20, T:0.37
Consensus pattern (26 bp):
GTGGCTCTGCCACATTATCTGTTCTG
Found at i:100585260 original size:29 final size:29
Alignment explanation
Indices: 100585227--100585338 Score: 111
Period size: 29 Copynumber: 3.9 Consensus size: 29
100585217 ATAATATGAT
100585227 TTGGGCCTAATGGGCCATATGAATGTGGA
1 TTGGGCCTAATGGGCCATATGAATGTGGA
* * * *
100585256 TTGGGCCTAGTGGGCCATAAGAATATGAA
1 TTGGGCCTAATGGGCCATATGAATGTGGA
* * **
100585285 CTGGGCC-AGATGGGCCATTTGAAT-AAGA
1 TTGGGCCTA-ATGGGCCATATGAATGTGGA
* *
100585313 TTGGGCCTAGTGGGCCATATGCATGT
1 TTGGGCCTAATGGGCCATATGAATGT
100585339 ACGTAGGGGT
Statistics
Matches: 64, Mismatches: 16, Indels: 6
0.74 0.19 0.07
Matches are distributed among these distances:
28 20 0.31
29 44 0.69
ACGTcount: A:0.25, C:0.16, G:0.33, T:0.26
Consensus pattern (29 bp):
TTGGGCCTAATGGGCCATATGAATGTGGA
Found at i:100586396 original size:17 final size:18
Alignment explanation
Indices: 100586364--100586397 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
100586354 TTTAAGAAGG
100586364 GTTTTCAATGAAAACACA
1 GTTTTCAATGAAAACACA
*
100586382 GTTTTCACT-AAAACAC
1 GTTTTCAATGAAAACAC
100586398 TTCAATGTAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.41, C:0.21, G:0.09, T:0.29
Consensus pattern (18 bp):
GTTTTCAATGAAAACACA
Found at i:100594565 original size:51 final size:51
Alignment explanation
Indices: 100594447--100594584 Score: 167
Period size: 49 Copynumber: 2.7 Consensus size: 51
100594437 GCTATCTGGT
* *
100594447 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAACAGTCTGGTAC
1 ACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGGAC
* * * *
100594498 ACG--TAGTAGCCTGCACTTAATACTACACACGTGATC-ACAGTTTTTGGGA-
1 ACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAG--TCTGGGAC
*
100594547 ACGCATAGTAGCCTGCACTTAGTACTACACATGCGACC
1 ACGCATAGTAGCCTGCACTTAGTACTACACACGCGACC
100594585 TCACAATAGA
Statistics
Matches: 73, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
48 4 0.05
49 32 0.44
50 5 0.07
51 32 0.44
ACGTcount: A:0.29, C:0.28, G:0.20, T:0.24
Consensus pattern (51 bp):
ACGCATAGTAGCCTGCACTTAGTACTACACACGCGACCAACAGTCTGGGAC
Found at i:100600403 original size:54 final size:55
Alignment explanation
Indices: 100600323--100600511 Score: 185
Period size: 55 Copynumber: 3.5 Consensus size: 55
100600313 GGCATTTGGT
*
100600323 AGGATAAGGATATCATGTAAGACCATGCCAAGGCATGCAATTGATAAGTT-CTATA
1 AGGAAAAGGATATCATGTAAGACCATGCCAAGGCATGC-ATTGATAAGTTACTATA
* * * * *
100600378 AGG-CAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATA
1 AGGAAAAGGATATCATGTAAGACCATGCCAAGGCAT-GCATTGATAAGTTACTATA
** * *
100600433 AGGAAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGCTGAGTT-C-ATA
1 AGGAAAAGGATATCATGTAAGACCATGCCAAGGCAT-GCATTGATAAGTTACTATA
**
100600486 A--AATAAGGATGCCATGTAAGACCATG
1 AGGAA-AAGGATATCATGTAAGACCATG
100600512 TTTGGAACAA
Statistics
Matches: 116, Mismatches: 13, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
51 2 0.02
52 4 0.03
53 20 0.17
54 39 0.34
55 47 0.41
56 4 0.03
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (55 bp):
AGGAAAAGGATATCATGTAAGACCATGCCAAGGCATGCATTGATAAGTTACTATA
Found at i:100600457 original size:55 final size:54
Alignment explanation
Indices: 100600323--100600729 Score: 333
Period size: 54 Copynumber: 7.6 Consensus size: 54
100600313 GGCATTTGGT
* * * *
100600323 AGGATAAGGATATCATGTAAGACCATGCCAAGGCAT-GCAATTGATAAGTTCTATA
1 AGGA-AAGGATACCATGTAAGACCATGTCAAGACATGGC-ATTGATGAGTTCTATA
* * *
100600378 AGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATA
1 AGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATA
* * * *
100600433 AGGAAAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGCTGAGTTC-ATA
1 AGG-AAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATA
* * *** *
100600486 A-AATAAGGATGCCATGTAAGACCATGTTTGGAACAAGGCATT--TG-G-----TA
1 AGGA-AAGGATACCATGTAAGACCATGTCAAG-ACATGGCATTGATGAGTTCTATA
* * * *
100600533 A-GATAAGGATATCATGTAAGACCATG-CTAAGGCATGGCATTGATAAGTTCTATG
1 AGGA-AAGGATACCATGTAAGACCATGTC-AAGACATGGCATTGATGAGTTCTATA
* * *
100600587 AGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATA
1 AGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTT-CTATA
* * * * *
100600642 AGGCAAAGG-TCCCATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATA
1 AGG-AAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATA
* *
100600695 AGGCAAGGATACCACGTAAGACCATGTCAAGACAT
1 AGGAAAGGATACCATGTAAGACCATGTCAAGACAT
100600730 TGCAATGGTA
Statistics
Matches: 283, Mismatches: 49, Indels: 42
0.76 0.13 0.11
Matches are distributed among these distances:
46 8 0.03
47 26 0.09
48 1 0.00
49 1 0.00
51 2 0.01
52 10 0.04
53 48 0.17
54 90 0.32
55 89 0.31
56 8 0.03
ACGTcount: A:0.36, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
AGGAAAGGATACCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTCTATA
Found at i:100600527 original size:109 final size:108
Alignment explanation
Indices: 100600336--100600729 Score: 468
Period size: 109 Copynumber: 3.7 Consensus size: 108
100600326 ATAAGGATAT
*
100600336 CATGTAAGACCATGCCAAGGCAT-GCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGAC
1 CATGTAAGACCATGCCAAGGCATGGC-ATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGAC
100600400 CATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
65 CATGTCAAGACATGGCATTGATGAGTTACTATAAGG-AAAGGTCC
* * *** **
100600445 CATGTAAGACCATGCCAAGGCATGGCATTGCTGAGTTC-ATAAAATAAGGATGCCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
*** * ** *
100600509 ATGTTTGGAACAAGGCATT--TG-G-TAAGATAAGGATA--T--
66 ATGTCAAG-ACATGGCATTGATGAGTTACTATAAGGAAAGGTCC
* * *
100600545 CATGTAAGACCATGCTAAGGCATGGCATTGATAAGTTCTATGAGGCAAGGAAATCATGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
100600610 ATGTCAAGACATGGCATTGATGAGTTACTATAAGGCAAAGGTCC
66 ATGTCAAGACATGGCATTGATGAGTTACTATAAGG-AAAGGTCC
* * * * *
100600654 CATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGCAAGGATACCACGTAAGACC
1 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
100600718 ATGTCAAGACAT
66 ATGTCAAGACAT
100600730 TGCAATGGTA
Statistics
Matches: 233, Mismatches: 40, Indels: 25
0.78 0.13 0.08
Matches are distributed among these distances:
100 44 0.19
101 24 0.10
102 3 0.01
103 1 0.00
104 10 0.04
105 10 0.04
106 1 0.00
107 3 0.01
108 59 0.25
109 76 0.33
110 2 0.01
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.23
Consensus pattern (108 bp):
CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGCAAGGAAACCATGTAAGACC
ATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAGGTCC
Found at i:100600652 original size:209 final size:209
Alignment explanation
Indices: 100600290--100600721 Score: 740
Period size: 209 Copynumber: 2.1 Consensus size: 209
100600280 TATAATTTAT
* *
100600290 ATGTAAGACCATGTTTGGAACATGGCATTTGGTAGGATAAGGATATCATGTAAGACCATGCCAAG
1 ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAG
100600355 GCATGCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
66 GCATGCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
*
100600420 ATGAGTTACTATAAGGAAAAGGTCCCATGTAAGACCATGCCAAGGCATGGCATTGCTGAGTTCAT
131 ATGAGTTACTATAAGGAAAAGGTCCCATATAAGACCATGCCAAGGCATGGCATTGCTGAGTTCAT
* *
100600485 AAAATAAGGATGCC
196 AAAACAAGGATACC
*
100600499 ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCTAAG
1 ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAG
*
100600564 GCATGGC-ATTGATAAGTTCTATGAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATT
66 GCAT-GCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATT
* *
100600628 GATGAGTTACTATAAGGCAAAGGTCCCATATAAGACCATGCCAAGGCATGGCATTGGTGAGTTCA
130 GATGAGTTACTATAAGGAAAAGGTCCCATATAAGACCATGCCAAGGCATGGCATTGCTGAGTTCA
**
100600693 TAAGGCAAGGATACC
195 TAAAACAAGGATACC
*
100600708 ACGTAAGACCATGT
1 ATGTAAGACCATGT
100600722 CAAGACATTG
Statistics
Matches: 210, Mismatches: 12, Indels: 2
0.94 0.05 0.01
Matches are distributed among these distances:
209 208 0.99
210 2 0.01
ACGTcount: A:0.35, C:0.16, G:0.25, T:0.24
Consensus pattern (209 bp):
ATGTAAGACCATGTTTGGAACAAGGCATTTGGTAAGATAAGGATATCATGTAAGACCATGCCAAG
GCATGCAATTGATAAGTTCTATAAGGCAAGGAAATCATGTAAGACCATGTCAAGACATGGCATTG
ATGAGTTACTATAAGGAAAAGGTCCCATATAAGACCATGCCAAGGCATGGCATTGCTGAGTTCAT
AAAACAAGGATACC
Found at i:100600681 original size:155 final size:154
Alignment explanation
Indices: 100600382--100600757 Score: 327
Period size: 154 Copynumber: 2.4 Consensus size: 154
100600372 TCTATAAGGC
* **
100600382 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCCCA
1 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGAACCA
* * * *
100600447 TGTAAGACCATGCCAAGGCATGGCATTGCTGAGTTCATAAAATAAGGATGCCATGTAAGACCATG
66 TGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAAATAAGGATCCCATATAAGACCATG
***
100600512 TTTGGAACAAGGCATTTGGTAAGAT
131 CAAGG-ACAAGGCATTTGGTAAGAT
* * * * *
100600537 AAGGATATCATGTAAGACCATG-CTAAGGCATGGCATTGATAAGTT-CTATGAGG-CAAGGAAAT
1 AAGGAAATCATGTAAGACCATGTC-AAGACATGGCATTGATAAGTTACTATAAGGAAAAGG-AAC
* *
100600599 CATGTAAGACCATGTCAAGACATGGCATTGATGAGTTACTATAAGGCA-AAGG-TCCCATATAAG
64 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-C-ATAA--AATAAGGATCCCATATAAG
* *
100600662 ACCATGCCAAGG-CATGGCA-TTGGTGAGTTCAT
125 ACCATG-CAAGGACAAGGCATTTGGTAAG---AT
* * * * * *
100600694 AAGGCAAGGATACCACGTAAGACCATGTCAAGACATTGCAATGGTAAGTT-CAAAAAGGAAAAGG
1 AAGG-AA--AT--CATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGG
100600758 TTCTCGAGTA
Statistics
Matches: 175, Mismatches: 29, Indels: 26
0.76 0.13 0.11
Matches are distributed among these distances:
153 4 0.02
154 49 0.28
155 47 0.27
156 19 0.11
157 12 0.07
158 2 0.01
160 2 0.01
162 35 0.20
163 5 0.03
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.23
Consensus pattern (154 bp):
AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAGTTACTATAAGGAAAAGGAACCA
TGTAAGACCATGCCAAGACATGGCATTGATGAGTTCATAAAATAAGGATCCCATATAAGACCATG
CAAGGACAAGGCATTTGGTAAGAT
Found at i:100600866 original size:16 final size:17
Alignment explanation
Indices: 100600847--100600879 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
100600837 CTTATTTAAT
100600847 ATTGAGATTAT-AAGTA
1 ATTGAGATTATCAAGTA
*
100600863 ATTGAGGTTATCAAGTA
1 ATTGAGATTATCAAGTA
100600880 TTAAGTAACT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 10 0.67
17 5 0.33
ACGTcount: A:0.39, C:0.03, G:0.21, T:0.36
Consensus pattern (17 bp):
ATTGAGATTATCAAGTA
Found at i:100605129 original size:46 final size:48
Alignment explanation
Indices: 100605027--100605344 Score: 250
Period size: 46 Copynumber: 6.7 Consensus size: 48
100605017 ACATTATTAG
* * * *
100605027 AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAAATG-A
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGTA
* *
100605074 GAGCTAGTGTAAGA-TATGTCTGGGACAT-GCATCAGCCTTGAGATGTA
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGTA
100605121 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG-CTATGAGATGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-TGAGATGTA
* * * * * *
100605166 -GTCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGTATAGAGGT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCT-T-GAGATGTA
** * * * * * *
100605214 -GTTAGTGTAAGACCATGTCTAGGACATTGTATCGGCAC-GGATATGTGA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGC-CTTGAGATGT-A
* *
100605262 GAGCTAGTGTAAGACCATGTCTGGGACATGGCATC-GACTTGATGGATGT-
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGA--GATGTA
*
100605311 -GCCAGTGTAAGACCATGTCTGGGACATTGCATCA
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCA
100605345 ACACTATTCC
Statistics
Matches: 221, Mismatches: 34, Indels: 30
0.78 0.12 0.11
Matches are distributed among these distances:
44 10 0.05
45 16 0.07
46 64 0.29
47 46 0.21
48 49 0.22
49 3 0.01
50 29 0.13
51 4 0.02
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (48 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCAGCCTTGAGATGTA
Found at i:100605203 original size:138 final size:144
Alignment explanation
Indices: 100605028--100605343 Score: 366
Period size: 138 Copynumber: 2.2 Consensus size: 144
100605018 CATTATTAGA
* * *
100605028 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAA-ATGA-GAGCTAGTGTAAGA-TA
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCA-TGAATA-GAGGAGCTAGTGTAAGACCA
* *
100605090 TGTCTGGGACA-TGCATCAGC-CTTGAGATGT-A-AGCCAGTGTAAGA-CATGTCTGGGACAT-G
64 TGTCTAGGACATTGCATCAGCAC-GGAGATGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGG
100605149 CATC-AGCTATGA-GATGT
128 CATCGA-CT-TGAGGATGT
* * * *
100605166 GTCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGTATAGAGGTGTTAGTGTAAGACCATG
1 GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGAATAGAGGAGCTAGTGTAAGACCATG
* * * *
100605231 TCTAGGACATTGTATCGGCACGGATATGTGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCAT
66 TCTAGGACATTGCATCAGCACGGAGATGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
100605296 CGACTTGATGGATGT
131 CGACTTGA-GGATGT
* *
100605311 GCCAGTGTAAGACCATGTCTGGGACATTGCATC
1 GCCAATGTAAGACCATGTCTGGGACATGGCATC
100605344 AACACTATTC
Statistics
Matches: 150, Mismatches: 16, Indels: 17
0.82 0.09 0.09
Matches are distributed among these distances:
137 5 0.03
138 47 0.31
139 11 0.07
140 13 0.09
141 2 0.01
142 12 0.08
143 17 0.11
144 7 0.05
145 36 0.24
ACGTcount: A:0.27, C:0.17, G:0.30, T:0.26
Consensus pattern (144 bp):
GCCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGAATAGAGGAGCTAGTGTAAGACCATG
TCTAGGACATTGCATCAGCACGGAGATGTGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCAT
CGACTTGAGGATGT
Found at i:100605281 original size:50 final size:48
Alignment explanation
Indices: 100604980--100605343 Score: 199
Period size: 48 Copynumber: 7.7 Consensus size: 48
100604970 TTATTTGTGT
* * *
100604980 GCTAGTGTAAGAGACATGTCTGGGACAT-GCATCGACCAC--ATTATTA-GA
1 GCTAGTGTAAGA-CCATGTCTGGGACATGGCATCG-GCACGGA-TA-GAGGA
* * ** *
100605028 GCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCATTGAAATGA-GA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA-GAGGA
* *
100605076 GCTAGTGTAAGA-TATGTCTGGGACAT-GCATCAGC-CTTGAGAT-GTA--A
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC--G-GATAG-AGGA
* * * * *
100605122 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCAG--C-TATGAGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGAT-AGAGGA
* * * *
100605166 G-TCAATGTAAGACCATGTCTGGGACATGGCATCGGCATGTATAGAGGT
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAGAGGA
* * * * *
100605214 GTTAGTGTAAGACCATGTCTAGGACATTGTATCGGCACGGATATGTGAGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATA-GAG-GA
* * * *
100605264 GCTAGTGTAAGACCATGTCTGGGACATGGCATC-G-ACTTGATGGATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAC-GGATAGAGGA
* *
100605311 GCCAGTGTAAGACCATGTCTGGGACATTGCATC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATC
100605344 AACACTATTC
Statistics
Matches: 253, Mismatches: 42, Indels: 43
0.75 0.12 0.13
Matches are distributed among these distances:
41 2 0.01
42 1 0.00
43 1 0.00
44 9 0.04
45 15 0.06
46 46 0.18
47 60 0.24
48 78 0.31
49 11 0.04
50 30 0.12
ACGTcount: A:0.27, C:0.17, G:0.29, T:0.26
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCACGGATAGAGGA
Found at i:100614124 original size:25 final size:25
Alignment explanation
Indices: 100614080--100614128 Score: 71
Period size: 25 Copynumber: 2.0 Consensus size: 25
100614070 TTAAAGTATG
* * *
100614080 AAAAATGACTATTTTGCCCCTAGGT
1 AAAAATGACCATTATACCCCTAGGT
100614105 AAAAATGACCATTATACCCCTAGG
1 AAAAATGACCATTATACCCCTAGG
100614129 GTTTGATTAT
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (25 bp):
AAAAATGACCATTATACCCCTAGGT
Found at i:100614178 original size:10 final size:10
Alignment explanation
Indices: 100614159--100614204 Score: 60
Period size: 10 Copynumber: 4.6 Consensus size: 10
100614149 CATGAAACAT
100614159 TGATAT-ACA
1 TGATATGACA
100614168 TGATATGACA
1 TGATATGACA
100614178 TGATATGCACA
1 TGATATG-ACA
100614189 TGATATG-CTA
1 TGATATGAC-A
100614199 TGATAT
1 TGATAT
100614205 ATTCACTATA
Statistics
Matches: 34, Mismatches: 0, Indels: 5
0.87 0.00 0.13
Matches are distributed among these distances:
9 7 0.21
10 17 0.50
11 10 0.29
ACGTcount: A:0.37, C:0.11, G:0.17, T:0.35
Consensus pattern (10 bp):
TGATATGACA
Found at i:100614191 original size:11 final size:11
Alignment explanation
Indices: 100614165--100614196 Score: 57
Period size: 11 Copynumber: 3.0 Consensus size: 11
100614155 ACATTGATAT
100614165 ACATGATATG-
1 ACATGATATGC
100614175 ACATGATATGC
1 ACATGATATGC
100614186 ACATGATATGC
1 ACATGATATGC
100614197 TATGATATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
10 10 0.48
11 11 0.52
ACGTcount: A:0.38, C:0.16, G:0.19, T:0.28
Consensus pattern (11 bp):
ACATGATATGC
Found at i:100614191 original size:21 final size:21
Alignment explanation
Indices: 100614165--100614204 Score: 64
Period size: 21 Copynumber: 1.9 Consensus size: 21
100614155 ACATTGATAT
100614165 ACATGATATGAC-ATGATATGC
1 ACATGATATG-CTATGATATGC
100614186 ACATGATATGCTATGATAT
1 ACATGATATGCTATGATAT
100614205 ATTCACTATA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 1 0.06
21 17 0.94
ACGTcount: A:0.38, C:0.12, G:0.17, T:0.33
Consensus pattern (21 bp):
ACATGATATGCTATGATATGC
Found at i:100614309 original size:24 final size:24
Alignment explanation
Indices: 100614278--100614323 Score: 58
Period size: 25 Copynumber: 1.9 Consensus size: 24
100614268 AATTTATCGA
**
100614278 AAAGGGCTTTGCC-CCAGTTATTT
1 AAAGGGCTAGGCCTCCAGTTATTT
100614301 AAAGAGGCTAGGCCTCCAGTTAT
1 AAAG-GGCTAGGCCTCCAGTTAT
100614324 ATGATAAAGC
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
23 4 0.21
24 7 0.37
25 8 0.42
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (24 bp):
AAAGGGCTAGGCCTCCAGTTATTT
Found at i:100617134 original size:13 final size:13
Alignment explanation
Indices: 100617116--100617149 Score: 59
Period size: 13 Copynumber: 2.6 Consensus size: 13
100617106 CGGCTAACCT
100617116 ACATAATTAAATA
1 ACATAATTAAATA
100617129 ACATAATTAAATA
1 ACATAATTAAATA
*
100617142 AAATAATT
1 ACATAATT
100617150 TTTCATATAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 20 1.00
ACGTcount: A:0.62, C:0.06, G:0.00, T:0.32
Consensus pattern (13 bp):
ACATAATTAAATA
Found at i:100617408 original size:20 final size:21
Alignment explanation
Indices: 100617374--100617419 Score: 76
Period size: 20 Copynumber: 2.2 Consensus size: 21
100617364 GAACTGAAAT
100617374 GAGCTAAATTCGAGCTCAAGC
1 GAGCTAAATTCGAGCTCAAGC
*
100617395 GAGCTAAA-TCGAGCTCAAGT
1 GAGCTAAATTCGAGCTCAAGC
100617415 GAGCT
1 GAGCT
100617420 GATTGGAGCT
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.33, C:0.22, G:0.26, T:0.20
Consensus pattern (21 bp):
GAGCTAAATTCGAGCTCAAGC
Found at i:100617726 original size:22 final size:21
Alignment explanation
Indices: 100617687--100617727 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
100617677 CCAGTCCCAT
100617687 GCATCAGAAAATAATAACATG
1 GCATCAGAAAATAATAACATG
* *
100617708 GCATGCAGTAAATAGTAACA
1 GCAT-CAGAAAATAATAACA
100617728 GTCAAACATG
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.49, C:0.15, G:0.17, T:0.20
Consensus pattern (21 bp):
GCATCAGAAAATAATAACATG
Found at i:100621105 original size:56 final size:56
Alignment explanation
Indices: 100621019--100621194 Score: 343
Period size: 56 Copynumber: 3.1 Consensus size: 56
100621009 ACAAGGGATG
100621019 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
100621075 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
100621131 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
100621187 ATGGGCAA
1 ATGGGCAA
100621195 TAAACTAATA
Statistics
Matches: 119, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
56 119 1.00
ACGTcount: A:0.45, C:0.09, G:0.23, T:0.23
Consensus pattern (56 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:100621229 original size:112 final size:111
Alignment explanation
Indices: 100621019--100621234 Score: 260
Period size: 112 Copynumber: 1.9 Consensus size: 111
100621009 ACAAGGGATG
100621019 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
* * * ** ** ***
100621084 ACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
66 ACATCTAATGAAAAATGAAGTGAGAAAACAAAAA-AAAATAAGAAGC
*
100621131 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGCATGGGCAAT
1 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAA-
100621196 AA-A-CTAAT-AAGAAATGGAAG-GAAGAAAACAAAAAAAAAT
65 AACATCTAATGAA-AAAT-GAAGTG-AGAAAACAAAAAAAAAT
100621235 GTGTGTGAGT
Statistics
Matches: 89, Mismatches: 11, Indels: 9
0.82 0.10 0.08
Matches are distributed among these distances:
110 2 0.02
111 12 0.13
112 73 0.82
113 2 0.02
ACGTcount: A:0.50, C:0.08, G:0.21, T:0.21
Consensus pattern (111 bp):
ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGCATGGGCAAA
ACATCTAATGAAAAATGAAGTGAGAAAACAAAAAAAAATAAGAAGC
Found at i:100628543 original size:56 final size:56
Alignment explanation
Indices: 100628442--100628555 Score: 153
Period size: 56 Copynumber: 2.0 Consensus size: 56
100628432 GGGGTGGACT
100628442 TGCATGTCAATTTCCCCCCCATTTAAGTACTAGTGGCCGGCCATGACAATGG-ATGATG
1 TGCATGTCAATTTCCCCCCC--TTAAGTACTAGTGGCCGGCCATGACAA-GGAATGATG
*
100628500 TGCATGTCAAATTTCCCCCCC-TAA-TGAGTAGTGGCCGGCCATGACAAGGAATGATG
1 TGCATGTC-AATTTCCCCCCCTTAAGT-ACTAGTGGCCGGCCATGACAAGGAATGATG
100628556 GGCAAAACAT
Statistics
Matches: 52, Mismatches: 1, Indels: 8
0.85 0.02 0.13
Matches are distributed among these distances:
55 3 0.06
56 29 0.56
58 8 0.15
59 12 0.23
ACGTcount: A:0.25, C:0.25, G:0.24, T:0.25
Consensus pattern (56 bp):
TGCATGTCAATTTCCCCCCCTTAAGTACTAGTGGCCGGCCATGACAAGGAATGATG
Found at i:100629958 original size:39 final size:40
Alignment explanation
Indices: 100629754--100629976 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
100629744 TTGAATGCTG
* * * * * *
100629754 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
100629794 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
100629834 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
**
100629874 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
100629914 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
100629953 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
100629977 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 35 0.22
40 118 0.73
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:100629996 original size:79 final size:80
Alignment explanation
Indices: 100629829--100630011 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
100629819 GTGCGAGATA
* * *
100629829 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
100629894 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
100629909 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
100629973 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
100629988 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
100630012 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:100631243 original size:76 final size:76
Alignment explanation
Indices: 100631152--100631303 Score: 223
Period size: 76 Copynumber: 2.0 Consensus size: 76
100631142 AATTGGCCCG
** ** * *
100631152 ACCAAAAATTCTAGAAAAGTATATGTAGATGGGCATATGAGTCTAGTTTCAGGGAAAAATCACGA
1 ACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCAGGGAAAAATCACAA
100631217 AACTGATTTTC
66 AACTGATTTTC
* *
100631228 ACCAAAAATTCTAGAAAAAAATACATAGGTGGGGACATGAGTCTAGTTTCAGGGAAAAATCACAA
1 ACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCAGGGAAAAATCACAA
*
100631293 AATTGATTTTC
66 AACTGATTTTC
100631304 GAGTTGTGAA
Statistics
Matches: 67, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
76 67 1.00
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.26
Consensus pattern (76 bp):
ACCAAAAATTCTAGAAAAAAATACATAGATGGGCACATGAGTCTAGTTTCAGGGAAAAATCACAA
AACTGATTTTC
Found at i:100631567 original size:68 final size:71
Alignment explanation
Indices: 100631476--100631614 Score: 239
Period size: 70 Copynumber: 2.0 Consensus size: 71
100631466 GATTCTAGGA
*
100631476 CTACCGTAATACGTTTGGGTCTAGCTATACATGCCA-TTT-TGTGATTATTTGATAGTGTGGTGA
1 CTACCGTAATACGTTTGGGTCTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGA
100631539 TTTCTG
66 TTTCTG
*
100631545 CTACCGTAATGCG-TTGGGTCTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGA
1 CTACCGTAATACGTTTGGGTCTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGA
100631609 TTTCTG
66 TTTCTG
100631615 ACAATTGTAA
Statistics
Matches: 66, Mismatches: 2, Indels: 3
0.93 0.03 0.04
Matches are distributed among these distances:
68 22 0.33
69 15 0.23
70 29 0.44
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.41
Consensus pattern (71 bp):
CTACCGTAATACGTTTGGGTCTAGCTATACATGCCATTTTATGTGATTACTTGATAGTGTGGTGA
TTTCTG
Found at i:100631977 original size:77 final size:77
Alignment explanation
Indices: 100631850--100632005 Score: 276
Period size: 77 Copynumber: 2.0 Consensus size: 77
100631840 ATTCCCGACA
* *
100631850 AATACTACCCCCGCACCTACAATACCACCGGTAACGGACCAAATACGGTCAAATAAGCCCCCAGT
1 AATACCACCCCCGCACCTACAATACCACCGGTAACGGACCAAATAAGGTCAAATAAGCCCCCAGT
100631915 TGACAGAATCCG
66 TGACAGAATCCG
* *
100631927 AATACCACCCCCGCACCTACAATACCTCCGGTAACTGACCAAATAAGGTCAAATAAGCCCCCAGT
1 AATACCACCCCCGCACCTACAATACCACCGGTAACGGACCAAATAAGGTCAAATAAGCCCCCAGT
100631992 TGACAGAATCCG
66 TGACAGAATCCG
100632004 AA
1 AA
100632006 AACATGGGGC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
77 75 1.00
ACGTcount: A:0.36, C:0.35, G:0.15, T:0.15
Consensus pattern (77 bp):
AATACCACCCCCGCACCTACAATACCACCGGTAACGGACCAAATAAGGTCAAATAAGCCCCCAGT
TGACAGAATCCG
Found at i:100632921 original size:73 final size:73
Alignment explanation
Indices: 100632830--100632975 Score: 283
Period size: 73 Copynumber: 2.0 Consensus size: 73
100632820 AGGTTGTCGG
100632830 GACAGAATGCAAATCAGAGTGGGAGACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAAT
1 GACAGAATGCAAATCAGAGTGGGAGACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAAT
100632895 ACGGGCAA
66 ACGGGCAA
100632903 GACAGAATGCAAATCAGAGTGGGAGACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAAT
1 GACAGAATGCAAATCAGAGTGGGAGACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAAT
*
100632968 ATGGGCAA
66 ACGGGCAA
100632976 TGCTAGTGGT
Statistics
Matches: 72, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 72 1.00
ACGTcount: A:0.32, C:0.21, G:0.32, T:0.16
Consensus pattern (73 bp):
GACAGAATGCAAATCAGAGTGGGAGACCGGGTGCTACCACTGCTCGAGGTAGACCATCTGGAAAT
ACGGGCAA
Found at i:100638366 original size:47 final size:47
Alignment explanation
Indices: 100638297--100638660 Score: 529
Period size: 47 Copynumber: 7.7 Consensus size: 47
100638287 TCTGTACATG
*
100638297 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCA
* *
100638344 ATGTGCTGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGACCA
1 ATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCA
*
100638391 ATGTGCTGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACA-TGTATATATGTGATAAGGCCGAATGGCCA
* *
100638438 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
100638485 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
100638532 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* *
100638579 ATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
* * *
100638626 ATGTGATGGATGTGGAA-GTGTATAAATGTGATAAG
1 ATGTGATGAATGT-GAACATGTATATATGTGATAAG
100638661 TCCCGAAGGG
Statistics
Matches: 305, Mismatches: 10, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 301 0.99
48 4 0.01
ACGTcount: A:0.32, C:0.09, G:0.31, T:0.28
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGTATATATGTGATAAGGCCGAATGGCCA
Found at i:100639594 original size:61 final size:61
Alignment explanation
Indices: 100639499--100639619 Score: 233
Period size: 61 Copynumber: 2.0 Consensus size: 61
100639489 GTGGATTCTA
100639499 ACTACCAGTTCAGGGATCATCAGCACTTCGTCACACTATCTACCATTACGGCAACTATGTG
1 ACTACCAGTTCAGGGATCATCAGCACTTCGTCACACTATCTACCATTACGGCAACTATGTG
*
100639560 ACTACCAGTTCGGGGATCATCAGCACTTCGTCACACTATCTACCATTACGGCAACTATGT
1 ACTACCAGTTCAGGGATCATCAGCACTTCGTCACACTATCTACCATTACGGCAACTATGT
100639620 AATTAGATTT
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
61 59 1.00
ACGTcount: A:0.27, C:0.30, G:0.17, T:0.26
Consensus pattern (61 bp):
ACTACCAGTTCAGGGATCATCAGCACTTCGTCACACTATCTACCATTACGGCAACTATGTG
Found at i:100640616 original size:40 final size:40
Alignment explanation
Indices: 100640561--100640872 Score: 491
Period size: 40 Copynumber: 7.8 Consensus size: 40
100640551 CAGTATGTTA
*
100640561 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGTTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
100640601 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * * *
100640641 TATTCGGGCTAAGTCCTGAAGAGCATTCGTGCTGCTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
100640681 TATCCGGACTAGGTCCCGAAGAGCATTCGTGCTGTTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
100640721 TATCCGGGCTAAGTTCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
* * *
100640761 TATCCGGGCTAAGTTCCAAAGAGCATTCGTGCTGGTGATA
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
100640801 TACCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
*
100640841 TATCCGGGCTAAGCCCCGAAG-GCATTCGTGCT
1 TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCT
100640873 TGGAAAAAAT
Statistics
Matches: 249, Mismatches: 23, Indels: 1
0.91 0.08 0.00
Matches are distributed among these distances:
39 11 0.04
40 238 0.96
ACGTcount: A:0.21, C:0.23, G:0.30, T:0.26
Consensus pattern (40 bp):
TATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTGGTGATG
Found at i:100650699 original size:40 final size:40
Alignment explanation
Indices: 100650638--100650779 Score: 189
Period size: 40 Copynumber: 3.6 Consensus size: 40
100650628 TATTCGAATG
*
100650638 ATATCCGGGCTAAGTCTCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
100650678 ATATTCGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
100650718 ATATCCGGGCTAAGACTCGAAGGCATTTGTGCGAGTCG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGT-GACT
*
100650758 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
100650780 TACTTGGGTT
Statistics
Matches: 88, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
39 13 0.15
40 74 0.84
41 1 0.01
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:100656611 original size:54 final size:54
Alignment explanation
Indices: 100656545--100656759 Score: 225
Period size: 54 Copynumber: 4.0 Consensus size: 54
100656535 GTAAGATAAG
* *
100656545 GATATCATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * ** *
100656599 GAAATCATGTAAGACCATGTGAAGACATGGCATTGATGAGTTACTATAAGGAAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTT-CTATAAGGAAAA
* * * * * * * *
100656654 GGTCCCATGTATGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGGGAAG
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
* * * * * *
100656707 GATACCACGTAAGACCATGTCAAGACATGGCAATGGTAAGTTCAAAAAGGAAA
1 GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAA
100656760 TGGTTCCCGA
Statistics
Matches: 133, Mismatches: 26, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
53 43 0.32
54 45 0.34
55 45 0.34
ACGTcount: A:0.38, C:0.15, G:0.25, T:0.22
Consensus pattern (54 bp):
GATACCATGTAAGACCATGCCAAGACATGGCATTGATAAGTTCTATAAGGAAAA
Found at i:100656671 original size:55 final size:54
Alignment explanation
Indices: 100656550--100656738 Score: 220
Period size: 55 Copynumber: 3.5 Consensus size: 54
100656540 ATAAGGATAT
* * ** *
100656550 CATGTAAGACCATGCCAAGGCATGGCATTGATAAGTTCTATAAGGAAAAGAAAT
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTAC
** *
100656604 CATGTAAGACCATGTGAAGACATGGCATTGATGAGTTACTATAAGGAAAAGGTCC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTT-CTATAAGGAAAAGGTAC
* * * *
100656659 CATGTATGACCATGCCAAGGCATGGCATTGGTGAGTTC-ATAAGG-GAAGGATAC
1 CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGG-TAC
* *
100656712 CACGTAAGACCATGTCAAGACATGGCA
1 CATGTAAGACCATGCCAAGACATGGCA
100656739 ATGGTAAGTT
Statistics
Matches: 114, Mismatches: 19, Indels: 5
0.83 0.14 0.04
Matches are distributed among these distances:
52 4 0.04
53 31 0.27
54 34 0.30
55 45 0.39
ACGTcount: A:0.36, C:0.17, G:0.25, T:0.22
Consensus pattern (54 bp):
CATGTAAGACCATGCCAAGACATGGCATTGATGAGTTCTATAAGGAAAAGGTAC
Found at i:100657892 original size:21 final size:21
Alignment explanation
Indices: 100657866--100657908 Score: 77
Period size: 21 Copynumber: 2.0 Consensus size: 21
100657856 GTGCAACAAG
*
100657866 GGAAACTTTAACTAATAAACT
1 GGAAACTTTAACGAATAAACT
100657887 GGAAACTTTAACGAATAAACT
1 GGAAACTTTAACGAATAAACT
100657908 G
1 G
100657909 TACTAATTGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.47, C:0.14, G:0.14, T:0.26
Consensus pattern (21 bp):
GGAAACTTTAACGAATAAACT
Found at i:100661146 original size:49 final size:50
Alignment explanation
Indices: 100661074--100661248 Score: 173
Period size: 48 Copynumber: 3.6 Consensus size: 50
100661064 TAATGTCGAT
*
100661074 GCCATGTCCCAGACATGGTCTTACACTGACTATCA-AAATT-G-AGGCCGGC
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCGTA--CCGAC
* * * *
100661123 GCCATGTCCTAGACATGGTCTTACACT-AGCTCTCACATATTCGTACCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGA-CTATCACAAATTCGTACCGAC
* * * * * *
100661173 GCCATGTCCCAGACATGGTCTTACACTGAC-ACCTC-TATACGTGCCGAT
1 GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCGTACCGAC
*
100661221 GCCATGTCCCAGACATGGTTTTACACTG
1 GCCATGTCCCAGACATGGTCTTACACTG
100661249 GCACATTTCA
Statistics
Matches: 109, Mismatches: 12, Indels: 11
0.83 0.09 0.08
Matches are distributed among these distances:
48 39 0.36
49 33 0.30
50 34 0.31
51 2 0.02
52 1 0.01
ACGTcount: A:0.24, C:0.30, G:0.19, T:0.26
Consensus pattern (50 bp):
GCCATGTCCCAGACATGGTCTTACACTGACTATCACAAATTCGTACCGAC
Found at i:100661328 original size:46 final size:48
Alignment explanation
Indices: 100661071--100661431 Score: 227
Period size: 46 Copynumber: 7.6 Consensus size: 48
100661061 GCATAATGTC
* * *
100661071 GATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAAT-T-GAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T--ACATCTCGAGGCT
** * * * *
100661120 GGCGCCATGTCCTAGACATGGTCTTACACTAGCTCTCACATATTCGTA--CC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-T-ACAT-CTCG-AGGCT
* * ** *
100661170 GATGCCATGTCCCAGACATGGTCTTACACTGAC--ACCTCTATACGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-G-GCT
* * * *
100661218 GATGCCATGTCCCAGACATGGTTTTACACTGGC--ACATTTC-ATAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGA-GGCT
* *
100661264 GATG-AATGTCCCAAACAT-GTCTTACACTGGCTTACATCTCGAGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCT
* * * * *
100661310 GATG-CATGTCCCAGACAT-GTCTTACACTAGCTCT-CGTCTCAATGTT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACATCTCGAGGCT
* * *
100661356 GACGCCATGTCCCAGACATGGTCTTACACTGGCTCT-CATAAT-GTGGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGGCT-TACAT-CTCGAGGCT
100661404 GATG-CATGTCCCAGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
100661432 AGCGCACAAA
Statistics
Matches: 251, Mismatches: 46, Indels: 33
0.76 0.14 0.10
Matches are distributed among these distances:
44 13 0.05
45 13 0.05
46 68 0.27
47 31 0.12
48 62 0.25
49 31 0.12
50 31 0.12
51 1 0.00
52 1 0.00
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGAGGCT
Found at i:100661404 original size:94 final size:96
Alignment explanation
Indices: 100661068--100661434 Score: 316
Period size: 94 Copynumber: 3.9 Consensus size: 96
100661058 AGGGCATAAT
* * ** *
100661068 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTATCAAAATTGAGGCCGGCGCCATGTCCT
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAA-TGAGGCCGATGCCATGTCCC
* * *
100661133 AGACATGGTCTTACACTAGCTCTCACAT-ATTC
65 AGACATGGTCTTACACTAGCTCTCTC-TCAATA
*
100661165 GTACCGATGCCATGTCCCAGACATGGTCTTACACTGACACCTC-T-AT-ACGTGCCGATGCCATG
1 GT--CGATGCCATGTCCCAGACATGGTCTTACACTGAC-TCTCATAATGA-G-GCCGATGCCATG
* * *
100661227 TCCCAGACATGGTTTTACACTGGCACAT-T-TC-ATA
61 TCCCAGACATGGTCTTACACTAGCTC-TCTCTCAATA
* * * * * *
100661261 GCCGATG-AATGTCCCAAACAT-GTCTTACACTGGCT-TACAT-CTCGAGGCTGATG-CATGTCC
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCT-CATAAT-GAGGCCGATGCCATGTCC
100661321 CAGACAT-GTCTTACACTAGCTCTCGTCTCAAT-
64 CAGACATGGTCTTACACTAGCTCTC-TCTCAATA
* * * * *
100661353 GTTGACGCCATGTCCCAGACATGGTCTTACACTGGCTCTCATAATGTGGCTGATG-CATGTCCCA
1 GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGAGGCCGATGCCATGTCCCA
100661417 GACAT-GTCTTACACTAGC
66 GACATGGTCTTACACTAGC
100661435 GCACAAATGA
Statistics
Matches: 222, Mismatches: 29, Indels: 41
0.76 0.10 0.14
Matches are distributed among these distances:
89 1 0.00
90 13 0.06
91 16 0.07
92 26 0.12
93 27 0.12
94 59 0.27
95 2 0.01
96 4 0.02
97 4 0.02
98 33 0.15
99 35 0.16
100 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.28
Consensus pattern (96 bp):
GTCGATGCCATGTCCCAGACATGGTCTTACACTGACTCTCATAATGAGGCCGATGCCATGTCCCA
GACATGGTCTTACACTAGCTCTCTCTCAATA
Found at i:100665851 original size:40 final size:40
Alignment explanation
Indices: 100665796--100666016 Score: 311
Period size: 40 Copynumber: 5.5 Consensus size: 40
100665786 TATTCGGATG
* *
100665796 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
100665836 ATATCTGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
*
100665876 ATATCCGGGCTAAGTCCCGAAGGCCTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* **
100665916 ATATCCGGGCTAAGTACCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
100665956 ATATCTGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
* *
100665996 ATATCC-GACTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
100666017 ATACTTGGGT
Statistics
Matches: 161, Mismatches: 19, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
39 12 0.07
40 147 0.91
41 2 0.01
ACGTcount: A:0.25, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:100675438 original size:23 final size:24
Alignment explanation
Indices: 100675402--100675481 Score: 90
Period size: 24 Copynumber: 3.3 Consensus size: 24
100675392 CTAGAGGCCT
* *
100675402 AGCCTCTTTTAATAACTTAGGC-AA
1 AGCC-CTTTCAATAACTGAGGCAAA
* *
100675426 CGCCCTTTCAATAACTGGGGCAAA
1 AGCCCTTTCAATAACTGAGGCAAA
* *
100675450 AGCCCTTTCAATAACTGGGGCATA
1 AGCCCTTTCAATAACTGAGGCAAA
100675474 AGCCCTTT
1 AGCCCTTT
100675482 TTCACTTCCT
Statistics
Matches: 49, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
23 14 0.29
24 35 0.71
ACGTcount: A:0.29, C:0.26, G:0.17, T:0.28
Consensus pattern (24 bp):
AGCCCTTTCAATAACTGAGGCAAA
Found at i:100675459 original size:24 final size:24
Alignment explanation
Indices: 100675427--100675481 Score: 101
Period size: 24 Copynumber: 2.3 Consensus size: 24
100675417 CTTAGGCAAC
100675427 GCCCTTTCAATAACTGGGGCAAAA
1 GCCCTTTCAATAACTGGGGCAAAA
*
100675451 GCCCTTTCAATAACTGGGGCATAA
1 GCCCTTTCAATAACTGGGGCAAAA
100675475 GCCCTTT
1 GCCCTTT
100675482 TTCACTTCCT
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.27, C:0.27, G:0.20, T:0.25
Consensus pattern (24 bp):
GCCCTTTCAATAACTGGGGCAAAA
Found at i:100675558 original size:20 final size:20
Alignment explanation
Indices: 100675533--100675571 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
100675523 TATGAATACA
100675533 TCATGTGCATATCATACATT
1 TCATGTGCATATCATACATT
100675553 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
100675572 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.10, T:0.38
Consensus pattern (20 bp):
TCATGTGCATATCATACATT
Found at i:100675577 original size:20 final size:20
Alignment explanation
Indices: 100675534--100675578 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
100675524 ATGAATACAT
**
100675534 CATGTGCATATCATACATTT
1 CATGTGCATATCATACATAC
100675554 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
100675574 CATGT
1 CATGT
100675579 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.11, T:0.36
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:100683056 original size:72 final size:72
Alignment explanation
Indices: 100682966--100683107 Score: 275
Period size: 72 Copynumber: 2.0 Consensus size: 72
100682956 AATAATTAAA
*
100682966 GGAAATTTAATGAAAACCAACGCTTATTTAAAAGCCCAAAGACGATCACTGTGGCTACTCTGAAT
1 GGAAATTTAATGAAAACCAACGCTTATTTAAAAGCCCAAAGACGATCACCGTGGCTACTCTGAAT
100683031 CCCCTCC
66 CCCCTCC
100683038 GGAAATTTAATGAAAACCAACGCTTATTTAAAAGCCCAAAGACGATCACCGTGGCTACTCTGAAT
1 GGAAATTTAATGAAAACCAACGCTTATTTAAAAGCCCAAAGACGATCACCGTGGCTACTCTGAAT
100683103 CCCCT
66 CCCCT
100683108 TTGGCCCAAG
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 69 1.00
ACGTcount: A:0.35, C:0.26, G:0.15, T:0.23
Consensus pattern (72 bp):
GGAAATTTAATGAAAACCAACGCTTATTTAAAAGCCCAAAGACGATCACCGTGGCTACTCTGAAT
CCCCTCC
Found at i:100683569 original size:24 final size:24
Alignment explanation
Indices: 100683520--100683595 Score: 109
Period size: 24 Copynumber: 3.2 Consensus size: 24
100683510 GGCCTAGCTT
*
100683520 CTTTTAGTAACTAGGGC-AAAGCC
1 CTTTTAATAACTAGGGCAAAAGCC
100683543 CTTTTAATAACTAGGGCAAAAGCC
1 CTTTTAATAACTAGGGCAAAAGCC
* * *
100683567 CTTTCAATAACTGGGGCATAAGCC
1 CTTTTAATAACTAGGGCAAAAGCC
100683591 CTTTT
1 CTTTT
100683596 TCACTTCCTC
Statistics
Matches: 47, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
23 16 0.34
24 31 0.66
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.29
Consensus pattern (24 bp):
CTTTTAATAACTAGGGCAAAAGCC
Found at i:100683671 original size:20 final size:20
Alignment explanation
Indices: 100683646--100683684 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
100683636 TATGAATACA
100683646 TCATGTGCATATCATACATG
1 TCATGTGCATATCATACATG
100683666 TCATGTGCATATCATACAT
1 TCATGTGCATATCATACAT
100683685 ACCATGTTTA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.21, G:0.13, T:0.36
Consensus pattern (20 bp):
TCATGTGCATATCATACATG
Found at i:100683690 original size:20 final size:20
Alignment explanation
Indices: 100683647--100683691 Score: 72
Period size: 20 Copynumber: 2.2 Consensus size: 20
100683637 ATGAATACAT
**
100683647 CATGTGCATATCATACATGT
1 CATGTGCATATCATACATAC
100683667 CATGTGCATATCATACATAC
1 CATGTGCATATCATACATAC
100683687 CATGT
1 CATGT
100683692 TTATCAAAAT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 23 1.00
ACGTcount: A:0.31, C:0.22, G:0.13, T:0.33
Consensus pattern (20 bp):
CATGTGCATATCATACATAC
Found at i:100688505 original size:42 final size:41
Alignment explanation
Indices: 100688443--100688604 Score: 193
Period size: 42 Copynumber: 3.9 Consensus size: 41
100688433 TACCGTACCA
* * *
100688443 ATGCCATATCCCAGATATGGTCTTACATGTA-TCTCGTATCG
1 ATGCCATA-GCCAGATATGGTCTTACACGTAGTCTCATATCG
*
100688484 ATGCCAATAGCTCA-ACTATGGTCTTACACGAAGTCTCATATCG
1 ATGCC-ATAGC-CAGA-TATGGTCTTACACGTAGTCTCATATCG
* *
100688527 ATGTCATATGCCAGATATGGTCTTACACGTAGTCTCATATTG
1 ATGCCATA-GCCAGATATGGTCTTACACGTAGTCTCATATCG
*
100688569 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTC
1 ATGCCATA-GCCAGATATGGTCTTACACGTAGTCTC
100688605 GTCATGACAT
Statistics
Matches: 106, Mismatches: 9, Indels: 11
0.84 0.07 0.09
Matches are distributed among these distances:
41 7 0.07
42 83 0.78
43 16 0.15
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (41 bp):
ATGCCATAGCCAGATATGGTCTTACACGTAGTCTCATATCG
Found at i:100688588 original size:84 final size:84
Alignment explanation
Indices: 100688447--100688604 Score: 221
Period size: 84 Copynumber: 1.9 Consensus size: 84
100688437 GTACCAATGC
* * *
100688447 CATATCCCAGATATGGTCTTACATGTATCTCGTATCGATGCCAATAGCTCAACTATGGTCTTACA
1 CATATCCCAGATATGGTCTTACACGTATCTCATATCGATGCCAATAGCCCAACTATGGTCTTACA
100688512 CGAAGTCTCATATCGATGT
66 CGAAGTCTCATATCGATGT
* * *
100688531 CATATGCCAGATATGGTCTTACACGTAGTCTCATATTGATGCC-ATATCCCAGA-TATGGTCTTA
1 CATATCCCAGATATGGTCTTACACGTA-TCTCATATCGATGCCAATAGCCCA-ACTATGGTCTTA
*
100688594 CACGTAGTCTC
64 CACGAAGTCTC
100688605 GTCATGACAT
Statistics
Matches: 65, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
84 51 0.78
85 14 0.22
ACGTcount: A:0.27, C:0.24, G:0.17, T:0.32
Consensus pattern (84 bp):
CATATCCCAGATATGGTCTTACACGTATCTCATATCGATGCCAATAGCCCAACTATGGTCTTACA
CGAAGTCTCATATCGATGT
Found at i:100690088 original size:51 final size:51
Alignment explanation
Indices: 100690033--100690137 Score: 147
Period size: 51 Copynumber: 2.1 Consensus size: 51
100690023 ATGTGAAGGA
** *
100690033 TCTGATCGATAACAACGTAACATAGACACATGAAACAAATTGTGGATCCTT
1 TCTGATCGATAACAACACAACATAGACACATGAAACAAATTGTGGATCATT
** **
100690084 TCTGATCGATAACGGCACAACATAGACACATGAAACCCATTGTGGATCATT
1 TCTGATCGATAACAACACAACATAGACACATGAAACAAATTGTGGATCATT
100690135 TCT
1 TCT
100690138 AACTCATCGG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
51 47 1.00
ACGTcount: A:0.36, C:0.22, G:0.16, T:0.26
Consensus pattern (51 bp):
TCTGATCGATAACAACACAACATAGACACATGAAACAAATTGTGGATCATT
Found at i:100696105 original size:47 final size:47
Alignment explanation
Indices: 100696051--100696245 Score: 187
Period size: 47 Copynumber: 4.1 Consensus size: 47
100696041 TTAGGATTTT
** *
100696051 ATGTGATGAATGTGAATGTGCATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* ** *
100696098 ATGTGATGAATGTGAGCACACATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
* * * * *
100696145 ATGTGGTGAATATGAACATGCATATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
** * * * *
100696192 ATGTGAAAAATGTATGAGAAATGC--ATATGTGGTAAAGCCGAATGGCTA
1 ATGTGATGAATG--TGA-ACATGCATATATGTGATAAGGCCGAATGGCCA
100696240 ATGTGA
1 ATGTGA
100696246 AATATGTATG
Statistics
Matches: 124, Mismatches: 21, Indels: 5
0.83 0.14 0.03
Matches are distributed among these distances:
47 86 0.69
48 30 0.24
49 3 0.02
50 5 0.04
ACGTcount: A:0.35, C:0.11, G:0.29, T:0.26
Consensus pattern (47 bp):
ATGTGATGAATGTGAACATGCATATATGTGATAAGGCCGAATGGCCA
Found at i:100696231 original size:48 final size:48
Alignment explanation
Indices: 100696168--100696351 Score: 262
Period size: 48 Copynumber: 3.8 Consensus size: 48
100696158 GAACATGCAT
*
100696168 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
*
100696216 ATATGTGGTAAAGCCGAATGGCTAATGTGAAATATGTATGAGATATGC
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
* * * *
100696264 ATATGTGGTCAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGT
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATGTATGAGATATGC
* *
100696314 ATATGTGGTAAAGCCGAATGGCTAGTGTGAAATATGTA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTA
100696352 GGCGATGTGC
Statistics
Matches: 120, Mismatches: 12, Indels: 8
0.86 0.09 0.06
Matches are distributed among these distances:
47 1 0.01
48 78 0.65
50 40 0.33
51 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (48 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGATATGC
Found at i:100696322 original size:98 final size:96
Alignment explanation
Indices: 100696168--100696351 Score: 280
Period size: 98 Copynumber: 1.9 Consensus size: 96
100696158 GAACATGCAT
*
100696168 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATGTATGAGAAATGCATATGTGGTAAAGCCGA
1 ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATATATGAGAAATGCATATGTGGTAAAGCCGA
100696233 ATGGCTAATGTGAAATATGTATGAGATATGC
66 ATGGCTAATGTGAAATATGTATGAGATATGC
* * * *
100696264 ATATGTGGTCAAGCTGAATGG-TCAATGTGAAATATATATATGAGATATGTATATGTGGTAAAGC
1 ATATGTGGTAAAGCCGAATGGCT-AATGTGAAA-A-ATATATGAGAAATGCATATGTGGTAAAGC
*
100696328 CGAATGGCTAGTGTGAAATATGTA
63 CGAATGGCTAATGTGAAATATGTA
100696352 GGCGATGTGC
Statistics
Matches: 79, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
95 1 0.01
96 28 0.35
97 1 0.01
98 49 0.62
ACGTcount: A:0.36, C:0.08, G:0.27, T:0.29
Consensus pattern (96 bp):
ATATGTGGTAAAGCCGAATGGCTAATGTGAAAAATATATGAGAAATGCATATGTGGTAAAGCCGA
ATGGCTAATGTGAAATATGTATGAGATATGC
Found at i:100696605 original size:37 final size:37
Alignment explanation
Indices: 100696497--100696605 Score: 173
Period size: 37 Copynumber: 2.9 Consensus size: 37
100696487 GGAAATATAT
*
100696497 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTATG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
*
100696534 TCTGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
* * *
100696571 TCCGGGTAAGACCCGATAACTTCGAGTGGAGATTT
1 TCCGGGTAAGACCCGATGACTACGTGTGGAGATTT
100696606 CGTCTGAGCT
Statistics
Matches: 66, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
37 66 1.00
ACGTcount: A:0.24, C:0.18, G:0.31, T:0.27
Consensus pattern (37 bp):
TCCGGGTAAGACCCGATGACTACGTGTGGAGATTTTG
Found at i:100700263 original size:79 final size:82
Alignment explanation
Indices: 100700152--100700336 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
100700142 GCTACTCGTT
* * *
100700152 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
100700215 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
100700232 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
100700295 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
100700312 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
100700337 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:100700336 original size:40 final size:40
Alignment explanation
Indices: 100700133--100700336 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
100700123 CGGAATTTAA
** *
100700133 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
100700173 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
100700213 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
100700252 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
100700292 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
100700332 CCGGA
1 CCGGA
100700337 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:100703468 original size:42 final size:42
Alignment explanation
Indices: 100703313--100703473 Score: 162
Period size: 42 Copynumber: 3.8 Consensus size: 42
100703303 TACTGTACCA
* ** *
100703313 ATGCCATATCCCACATATGGTCTTACATATA-TCTCGTATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
* ** **
100703354 ATGCCAATATCCCAGCTATGGTCTTACACAAAGTCTCATATCA
1 ATGCC-ATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
* ** *
100703397 ATGCCATATCCCAGATAAGGTCTGGCACGTTGTCTCATATTG
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
* **
100703439 ATGTCATATCCTTGATATGGTCTTACACGTAGTCT
1 ATGCCATATCCCAGATATGGTCTTACACGTAGTCT
100703474 TAGTAACCAT
Statistics
Matches: 95, Mismatches: 23, Indels: 3
0.79 0.19 0.02
Matches are distributed among these distances:
41 5 0.05
42 78 0.82
43 12 0.13
ACGTcount: A:0.27, C:0.24, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGTAGTCTCATATTG
Found at i:100710310 original size:40 final size:41
Alignment explanation
Indices: 100710250--100710470 Score: 298
Period size: 40 Copynumber: 5.6 Consensus size: 41
100710240 TATTCGAATG
*
100710250 ATATCCGGGCTAAG-TCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
100710290 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
*
100710330 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
*
100710370 ATATCCGGGCTAAG-TCCCGAAGGCATTTATGCTAGTGACT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
* *
100710410 ATATCCGGGCTAAGA-CCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAG-TGACT
100710450 ATATCC-GGCTAA-ATCCCGAAG
1 ATATCCGGGCTAAGATCCCGAAG
100710471 ATACTTGGGT
Statistics
Matches: 162, Mismatches: 11, Indels: 17
0.85 0.06 0.09
Matches are distributed among these distances:
38 1 0.01
39 14 0.09
40 142 0.88
41 5 0.03
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGATCCCGAAGGCATTTGTGCTAGTGACT
Found at i:100710738 original size:22 final size:22
Alignment explanation
Indices: 100710698--100710739 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
100710688 GAATGTGCAT
*
100710698 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
100710720 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
100710740 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:100718561 original size:40 final size:40
Alignment explanation
Indices: 100718517--100718737 Score: 279
Period size: 40 Copynumber: 5.5 Consensus size: 40
100718507 TATTCGAATG
*
100718517 ATATCCGGGCTAAGTCCCGAAGGCTTTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* *
100718557 ATATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCTAG-TGACT
* *
100718597 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCTAGCGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
100718637 ATATCCGGGCTAAGTCTCGAAGGCATTTATTCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
* * *
100718677 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-TT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAG-TGACT
*
100718717 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
100718738 ATACTTGGGT
Statistics
Matches: 156, Mismatches: 20, Indels: 11
0.83 0.11 0.06
Matches are distributed among these distances:
39 14 0.09
40 137 0.88
41 5 0.03
ACGTcount: A:0.24, C:0.22, G:0.26, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
Found at i:100719005 original size:22 final size:22
Alignment explanation
Indices: 100718965--100719006 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
100718955 GAATGTGCAT
*
100718965 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
100718987 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
100719007 TCGAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:100724155 original size:38 final size:39
Alignment explanation
Indices: 100724101--100724196 Score: 131
Period size: 38 Copynumber: 2.5 Consensus size: 39
100724091 AATTAGTTTA
* * *
100724101 AGTCTTTAATTATGTCATCATTTGAACATCATTAATATG
1 AGTCTTTAATTATGTCATAATCTGAACATCATTAATAAG
*
100724140 AG-CTTTAATTATGTCATAATCTGAACATCTTTAATAAG
1 AGTCTTTAATTATGTCATAATCTGAACATCATTAATAAG
* *
100724178 GGTTTTTAATTATGTCATA
1 AGTCTTTAATTATGTCATA
100724197 GTTTAGGACA
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
38 33 0.66
39 17 0.34
ACGTcount: A:0.33, C:0.11, G:0.11, T:0.44
Consensus pattern (39 bp):
AGTCTTTAATTATGTCATAATCTGAACATCATTAATAAG
Found at i:100728403 original size:40 final size:39
Alignment explanation
Indices: 100728323--100728462 Score: 117
Period size: 40 Copynumber: 3.5 Consensus size: 39
100728313 ATGCTGTCCG
* *
100728323 GGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGACT-ATATCC
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-A-TAAAATCC
* * *
100728362 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAATTCC
1 GG-CTAAG-TCCCGAAGGCATTTGTGCGAGATATAAAATCC
* *
100728402 GGGTCAAGTCCCGAAGGCCTTTGTGCGAGATATAAAATCC
1 GGCT-AAGTCCCGAAGGCATTTGTGCGAGATATAAAATCC
*
100728442 GGGTTAAGTCCCGAAGGCATT
1 -GGCTAAGTCCCGAAGGCATT
100728463 GTATGAGTTA
Statistics
Matches: 82, Mismatches: 11, Indels: 15
0.76 0.10 0.14
Matches are distributed among these distances:
39 5 0.06
40 64 0.78
41 13 0.16
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (39 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGATATAAAATCC
Found at i:100735947 original size:40 final size:38
Alignment explanation
Indices: 100735902--100736006 Score: 102
Period size: 40 Copynumber: 2.6 Consensus size: 38
100735892 AAGTGACTAT
* *
100735902 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTATTAA
1 ATCCGG-CTAAG-TCCGAAGGCATTTGTGCGAGATATAAA
* * *
100735942 TTCCGGGTCAAGTCCCGAAGGCCTTTGTGCGAGATATAAA
1 ATCCGGCT-AAGT-CCGAAGGCATTTGTGCGAGATATAAA
*
100735982 ATCCGGGTTAAGTCCTGAAGGCATT
1 ATCC-GGCTAAGTCC-GAAGGCATT
100736007 GTATGAGTTA
Statistics
Matches: 53, Mismatches: 8, Indels: 8
0.77 0.12 0.12
Matches are distributed among these distances:
39 4 0.08
40 46 0.87
41 3 0.06
ACGTcount: A:0.27, C:0.20, G:0.27, T:0.27
Consensus pattern (38 bp):
ATCCGGCTAAGTCCGAAGGCATTTGTGCGAGATATAAA
Found at i:100740626 original size:94 final size:94
Alignment explanation
Indices: 100740465--100740731 Score: 489
Period size: 94 Copynumber: 2.8 Consensus size: 94
100740455 ATTCACTAAT
100740465 CATTTATAGACCACATCATACAAGAGATAGTTGCACGTGCATTTATATATATAAGCTTACAGCCA
1 CATTTATAGACCACATCATACAAGAGATAGTTGCACGTGCATTTATATATATAAGCTTACAGCCA
100740530 ATTCAACCAAAACGAGATAGTTACACGTG
66 ATTCAACCAAAACGAGATAGTTACACGTG
100740559 CATTTATAGACCACATCATACAAGAGATAGTTGCACGTGCATTTATATATATAAGCTTACAGCCA
1 CATTTATAGACCACATCATACAAGAGATAGTTGCACGTGCATTTATATATATAAGCTTACAGCCA
100740624 ATTCAACCAAAACGAGATAGTTACACGTG
66 ATTCAACCAAAACGAGATAGTTACACGTG
* * *
100740653 CATTTATAGACCACATCATACAAGAGATAGTTGCACGTGCATTTGTATACATATAATCTTACAAC
1 CATTTATAGACCACATCATACAAGAGATAGTTGCACGTGCA-TT-TATATATATAAGCTTACAGC
100740718 CAATTCAACCAAAA
64 CAATTCAACCAAAA
100740732 TGAGCCAAGT
Statistics
Matches: 168, Mismatches: 3, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
94 135 0.80
95 2 0.01
96 31 0.18
ACGTcount: A:0.39, C:0.21, G:0.13, T:0.27
Consensus pattern (94 bp):
CATTTATAGACCACATCATACAAGAGATAGTTGCACGTGCATTTATATATATAAGCTTACAGCCA
ATTCAACCAAAACGAGATAGTTACACGTG
Found at i:100741227 original size:65 final size:65
Alignment explanation
Indices: 100741123--100741252 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
100741113 TCATTATTTC
100741123 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
1 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
*
100741188 ATGAATTAATAATCGTAAGCTTAAAGTACATACTTGTACCTGGAAACACAAAATTTACATACTTT
1 ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
100741253 TTCATACCCT
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.42, C:0.16, G:0.11, T:0.32
Consensus pattern (65 bp):
ATGAATTAATAATCGTAAGCTTAAAGTACATACCTGTACCTGGAAACACAAAATTTACATACTTT
Found at i:100742208 original size:20 final size:21
Alignment explanation
Indices: 100742183--100742221 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
100742173 ATCCAAATTA
*
100742183 TCTATCCGCTA-CACACCAGC
1 TCTATCCCCTATCACACCAGC
100742203 TCTATCCCCTATCACACCA
1 TCTATCCCCTATCACACCA
100742222 TGTGGGGATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 10 0.59
21 7 0.41
ACGTcount: A:0.26, C:0.46, G:0.05, T:0.23
Consensus pattern (21 bp):
TCTATCCCCTATCACACCAGC
Found at i:100742808 original size:28 final size:28
Alignment explanation
Indices: 100742776--100742890 Score: 142
Period size: 29 Copynumber: 4.0 Consensus size: 28
100742766 TACCTATATC
* *
100742776 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
100742804 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCC-AATCACAT-TCATA
* *
100742833 TGGCCCATTAGGCCTAAATCACATTTATA
1 TGGCCCATTAGGCC-CAATCACATTCATA
*
100742862 TGGCCCATTAGGCCCAGTCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
100742890 T
1 T
100742891 TCATGCTCAC
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
28 27 0.36
29 47 0.63
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:100742867 original size:58 final size:57
Alignment explanation
Indices: 100742767--100742877 Score: 159
Period size: 58 Copynumber: 1.9 Consensus size: 57
100742757 AATTTCATAT
* * *
100742767 ACCTATATCTGGCCCATTAAGCCCAATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTATATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
* * *
100742824 ACCTGTATATGGCCCATTAGGCCTAAATCACATTTATATGGCCCATTAGGCCCA
1 ACCTATATATGGCCCATTAAGCC-AAATCACATTCATATGGCCCATTAGGCCCA
100742878 GTCACATTCA
Statistics
Matches: 47, Mismatches: 6, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
57 20 0.43
58 27 0.57
ACGTcount: A:0.29, C:0.30, G:0.14, T:0.27
Consensus pattern (57 bp):
ACCTATATATGGCCCATTAAGCCAAATCACATTCATATGGCCCATTAGGCCCAAATC
Found at i:100743122 original size:16 final size:16
Alignment explanation
Indices: 100743101--100743137 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
100743091 GTAACCAAAC
*
100743101 TTTCGGCTTTTTAGCA
1 TTTCGGCTTTTCAGCA
*
100743117 TTTCGGCTTTTCAGCT
1 TTTCGGCTTTTCAGCA
100743133 TTTCG
1 TTTCG
100743138 ATTTTTCGGC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.08, C:0.22, G:0.19, T:0.51
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:100747312 original size:28 final size:29
Alignment explanation
Indices: 100747280--100747394 Score: 128
Period size: 29 Copynumber: 4.0 Consensus size: 29
100747270 TACCTGTATT
* *
100747280 TGGCCCATTAAGCCC-AATCATATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
*
100747308 TGGCCCATTAGGCCCAAATCACCTGT-ATA
1 TGGCCCATTAGGCCCAAATCACAT-TCATA
* *
100747337 TGGCCCATTAGGCCCAAATCACATTAAGA
1 TGGCCCATTAGGCCCAAATCACATTCATA
** *
100747366 TGGCCTGTTAGGCCC-AGTCACATTCATA
1 TGGCCCATTAGGCCCAAATCACATTCATA
100747394 T
1 T
100747395 TCATGCTCAC
Statistics
Matches: 74, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
28 26 0.35
29 47 0.64
30 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (29 bp):
TGGCCCATTAGGCCCAAATCACATTCATA
Found at i:100747337 original size:29 final size:29
Alignment explanation
Indices: 100747271--100747358 Score: 117
Period size: 29 Copynumber: 3.1 Consensus size: 29
100747261 AATTTCACAT
* *
100747271 ACCTGTATTTGGCCCATTAAGCCC-AATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
**
100747299 ATAT-TCATATGGCCCATTAGGCCCAAATC
1 ACCTGT-ATATGGCCCATTAGGCCCAAATC
100747328 ACCTGTATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAGGCCCAAATC
100747357 AC
1 AC
100747359 ATTAAGATGG
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
27 1 0.02
28 18 0.35
29 31 0.61
30 1 0.02
ACGTcount: A:0.28, C:0.31, G:0.15, T:0.26
Consensus pattern (29 bp):
ACCTGTATATGGCCCATTAGGCCCAAATC
Found at i:100747341 original size:57 final size:58
Alignment explanation
Indices: 100747271--100747381 Score: 152
Period size: 58 Copynumber: 1.9 Consensus size: 58
100747261 AATTTCACAT
* * * *
100747271 ACCTGTATTTGGCCCATTAAGCCC-AATCATATTCATATGGCCCATTAGGCCCAAATC
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTAAGATGGCCCATTAGGCCCAAATC
* **
100747328 ACCTGTATATGGCCCATTAGGCCCAAATCACATTAAGATGGCCTGTTAGGCCCA
1 ACCTGTATATGGCCCATTAAGCCCAAATCACATTAAGATGGCCCATTAGGCCCA
100747382 GTCACATTCA
Statistics
Matches: 46, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 22 0.48
58 24 0.52
ACGTcount: A:0.28, C:0.29, G:0.17, T:0.26
Consensus pattern (58 bp):
ACCTGTATATGGCCCATTAAGCCCAAATCACATTAAGATGGCCCATTAGGCCCAAATC
Found at i:100751870 original size:28 final size:28
Alignment explanation
Indices: 100751838--100751923 Score: 109
Period size: 28 Copynumber: 3.0 Consensus size: 28
100751828 TACCTGTATC
* *
100751838 TGGCCCATTAAGCCCAATCATATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
100751866 TGGCCCATTAGGCCCAAATCACATTTATA
1 TGGCCCATTAGGCCC-AATCACATTCATA
* * *
100751895 TGGCCCGTTAGGCCCAGTCCCATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
100751923 T
1 T
100751924 TCATGCTCAC
Statistics
Matches: 50, Mismatches: 7, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
28 25 0.50
29 25 0.50
ACGTcount: A:0.27, C:0.30, G:0.15, T:0.28
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:100752175 original size:16 final size:16
Alignment explanation
Indices: 100752133--100752168 Score: 63
Period size: 16 Copynumber: 2.2 Consensus size: 16
100752123 GTAGCCAAAC
100752133 TTTCAGCTTTTCGACA
1 TTTCAGCTTTTCGACA
*
100752149 TTTCAGCTTTTCGGCA
1 TTTCAGCTTTTCGACA
100752165 TTTC
1 TTTC
100752169 GACTTTTGCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.14, C:0.25, G:0.14, T:0.47
Consensus pattern (16 bp):
TTTCAGCTTTTCGACA
Found at i:100761129 original size:17 final size:18
Alignment explanation
Indices: 100761103--100761136 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
100761093 TTTATGTTTA
100761103 AATAAATTAATA-GCATT
1 AATAAATTAATATGCATT
*
100761120 AATAATTTAATATGCAT
1 AATAAATTAATATGCAT
100761137 ATATTTAATT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.50, C:0.06, G:0.06, T:0.38
Consensus pattern (18 bp):
AATAAATTAATATGCATT
Found at i:100761761 original size:17 final size:17
Alignment explanation
Indices: 100761725--100761762 Score: 58
Period size: 17 Copynumber: 2.2 Consensus size: 17
100761715 CCTAAATTTT
* *
100761725 AATTATTTAATTTTTCA
1 AATTATTTAATTATTAA
100761742 AATTATTTAATTATTAA
1 AATTATTTAATTATTAA
100761759 AATT
1 AATT
100761763 TTATATTTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.42, C:0.03, G:0.00, T:0.55
Consensus pattern (17 bp):
AATTATTTAATTATTAA
Found at i:100781200 original size:200 final size:200
Alignment explanation
Indices: 100780857--100781256 Score: 791
Period size: 200 Copynumber: 2.0 Consensus size: 200
100780847 TTATGATAAG
100780857 GAACAATTTCCTAAGGAGCCCAAGGTTTTTCGAATGTACTTGAATTTGTCCCGCACTGCCTCTAG
1 GAACAATTTCCTAAGGAGCCCAAGGTTTTTCGAATGTACTTGAATTTGTCCCGCACTGCCTCTAG
100780922 GTATGTTATAGGCCTCGAAGGCCTATACAAGGGACGAGTTGTTCATGGATGAAAAGCTTAAAATT
66 GTATGTTATAGGCCTCGAAGGCCTATACAAGGGACGAGTTGTTCATGGATGAAAAGCTTAAAATT
*
100780987 TGAATAAAATTTGGTGACCCAATTTGGTATGTTTCAAATTGTAAAGTCCTGGTAATGCCTCAAAT
131 TGAATAAAATTTGGTGACCCAATTTGGTACGTTTCAAATTGTAAAGTCCTGGTAATGCCTCAAAT
100781052 CCTAT
196 CCTAT
100781057 GAACAATTTCCTAAGGAGCCCAAGGTTTTTCGAATGTACTTGAATTTGTCCCGCACTGCCTCTAG
1 GAACAATTTCCTAAGGAGCCCAAGGTTTTTCGAATGTACTTGAATTTGTCCCGCACTGCCTCTAG
100781122 GTATGTTATAGGCCTCGAAGGCCTATACAAGGGACGAGTTGTTCATGGATGAAAAGCTTAAAATT
66 GTATGTTATAGGCCTCGAAGGCCTATACAAGGGACGAGTTGTTCATGGATGAAAAGCTTAAAATT
100781187 TGAATAAAATTTGGTGACCCAATTTGGTACGTTTCAAATTGTAAAGTCCTGGTAATGCCTCAAAT
131 TGAATAAAATTTGGTGACCCAATTTGGTACGTTTCAAATTGTAAAGTCCTGGTAATGCCTCAAAT
100781252 CCTAT
196 CCTAT
100781257 CTCGGCGTTG
Statistics
Matches: 199, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
200 199 1.00
ACGTcount: A:0.29, C:0.18, G:0.21, T:0.31
Consensus pattern (200 bp):
GAACAATTTCCTAAGGAGCCCAAGGTTTTTCGAATGTACTTGAATTTGTCCCGCACTGCCTCTAG
GTATGTTATAGGCCTCGAAGGCCTATACAAGGGACGAGTTGTTCATGGATGAAAAGCTTAAAATT
TGAATAAAATTTGGTGACCCAATTTGGTACGTTTCAAATTGTAAAGTCCTGGTAATGCCTCAAAT
CCTAT
Found at i:100786531 original size:50 final size:50
Alignment explanation
Indices: 100786474--100786573 Score: 191
Period size: 50 Copynumber: 2.0 Consensus size: 50
100786464 TTGCATTTAT
*
100786474 TATTGACATGAAATATCTTAGAAATGCATATTTGATGATAACGTGTGAAA
1 TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
100786524 TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
1 TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
100786574 AATGTCTCGG
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
50 49 1.00
ACGTcount: A:0.40, C:0.09, G:0.18, T:0.33
Consensus pattern (50 bp):
TATTGACATGAAATATCTTAGAAATGCATATTTGACGATAACGTGTGAAA
Found at i:100787462 original size:27 final size:27
Alignment explanation
Indices: 100787432--100787485 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
100787422 TGATTTGCCA
100787432 AATGAAGGCATGTAAAAATAAGTTTAT
1 AATGAAGGCATGTAAAAATAAGTTTAT
100787459 AATGAAGGCATGTAAAAATAAGTTTAT
1 AATGAAGGCATGTAAAAATAAGTTTAT
100787486 CTCTTTGTAT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.48, C:0.04, G:0.19, T:0.30
Consensus pattern (27 bp):
AATGAAGGCATGTAAAAATAAGTTTAT
Found at i:100798227 original size:25 final size:25
Alignment explanation
Indices: 100798199--100798254 Score: 58
Period size: 27 Copynumber: 2.2 Consensus size: 25
100798189 ATATACATCA
* *
100798199 CATAGGGGCAAAATAGTCATCTTAC
1 CATAAGGGAAAAATAGTCATCTTAC
* *
100798224 CATATAAGGGAAAAATAGTCATTTTAT
1 C--ATAAGGGAAAAATAGTCATCTTAC
100798251 CATA
1 CATA
100798255 TATAGGGGGT
Statistics
Matches: 25, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
25 4 0.16
27 21 0.84
ACGTcount: A:0.41, C:0.14, G:0.16, T:0.29
Consensus pattern (25 bp):
CATAAGGGAAAAATAGTCATCTTAC
Found at i:100798238 original size:27 final size:28
Alignment explanation
Indices: 100798208--100798261 Score: 83
Period size: 27 Copynumber: 2.0 Consensus size: 28
100798198 ACATAGGGGC
100798208 AAAATAGTCATCTTACCATATA-AGGGA
1 AAAATAGTCATCTTACCATATATAGGGA
* *
100798235 AAAATAGTCATTTTATCATATATAGGG
1 AAAATAGTCATCTTACCATATATAGGG
100798262 GGTCTAGGTA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
27 20 0.83
28 4 0.17
ACGTcount: A:0.43, C:0.11, G:0.15, T:0.31
Consensus pattern (28 bp):
AAAATAGTCATCTTACCATATATAGGGA
Found at i:100804824 original size:16 final size:16
Alignment explanation
Indices: 100804803--100804833 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
100804793 GACCTAGATT
*
100804803 AGGGAACGAACAAGGC
1 AGGGAAAGAACAAGGC
100804819 AGGGAAAGAACAAGG
1 AGGGAAAGAACAAGG
100804834 TTTTGGACTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.48, C:0.13, G:0.39, T:0.00
Consensus pattern (16 bp):
AGGGAAAGAACAAGGC
Found at i:100813031 original size:27 final size:27
Alignment explanation
Indices: 100812984--100813047 Score: 103
Period size: 27 Copynumber: 2.4 Consensus size: 27
100812974 AAATATTCTC
100812984 TAAATTAAT-AAATATTAATTTATCGA
1 TAAATTAATAAAATATTAATTTATCGA
*
100813010 TAAATTAATAAAATATTCATTTATCGA
1 TAAATTAATAAAATATTAATTTATCGA
*
100813037 TAAACTAATAA
1 TAAATTAATAA
100813048 TCTCGATAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 1
0.92 0.05 0.03
Matches are distributed among these distances:
26 9 0.26
27 26 0.74
ACGTcount: A:0.52, C:0.06, G:0.03, T:0.39
Consensus pattern (27 bp):
TAAATTAATAAAATATTAATTTATCGA
Found at i:100813055 original size:17 final size:17
Alignment explanation
Indices: 100813033--100813065 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
100813023 TATTCATTTA
*
100813033 TCGATAAACTAATAATC
1 TCGATAAAATAATAATC
100813050 TCGATAAAATAATAAT
1 TCGATAAAATAATAAT
100813066 TTTTTCGGGT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.12, G:0.06, T:0.30
Consensus pattern (17 bp):
TCGATAAAATAATAATC
Found at i:100813696 original size:39 final size:41
Alignment explanation
Indices: 100813623--100813703 Score: 114
Period size: 40 Copynumber: 2.0 Consensus size: 41
100813613 CAGTATCAAG
*
100813623 GAGCACCAATGTGCTAAGCAGGGCACAAATGTGCAT-ACAA
1 GAGCACCAAAGTGCTAAGCAGGGCACAAATGTGCATAACAA
*
100813663 GAGCACCAAAGTGC-AAGCAGGGCACTAGA-GTGCATAACAA
1 GAGCACCAAAGTGCTAAGCAGGGCAC-AAATGTGCATAACAA
100813703 G
1 G
100813704 GAACACATGT
Statistics
Matches: 37, Mismatches: 2, Indels: 4
0.86 0.05 0.09
Matches are distributed among these distances:
39 17 0.46
40 20 0.54
ACGTcount: A:0.38, C:0.22, G:0.27, T:0.12
Consensus pattern (41 bp):
GAGCACCAAAGTGCTAAGCAGGGCACAAATGTGCATAACAA
Found at i:100813716 original size:39 final size:39
Alignment explanation
Indices: 100813631--100813756 Score: 91
Period size: 39 Copynumber: 3.2 Consensus size: 39
100813621 AGGAGCACCA
*
100813631 ATGTGCTAAGCAGGGCAC-AAATGTGCAT-ACAA-GAGCACC
1 ATGTGC-AAGCAGGGCACTAAA-GTGCATAACAAGGAACA-C
* *
100813670 AAAGTGCAAGCAGGGCACTAGAGTGCATAACAAGGAACAC
1 -ATGTGCAAGCAGGGCACTAAAGTGCATAACAAGGAACAC
* * * * *
100813710 ATGTGCAATCAAGGGCA-TCATAGTGTA-AACAAGGCACAG
1 ATGTGCAAGC-AGGGCACT-AAAGTGCATAACAAGGAACAC
100813749 ATGTGCAA
1 ATGTGCAA
100813757 TCAGAAGCAA
Statistics
Matches: 72, Mismatches: 9, Indels: 11
0.78 0.10 0.12
Matches are distributed among these distances:
39 44 0.61
40 24 0.33
41 4 0.06
ACGTcount: A:0.39, C:0.20, G:0.26, T:0.15
Consensus pattern (39 bp):
ATGTGCAAGCAGGGCACTAAAGTGCATAACAAGGAACAC
Found at i:100814428 original size:41 final size:41
Alignment explanation
Indices: 100814362--100814439 Score: 104
Period size: 41 Copynumber: 1.9 Consensus size: 41
100814352 CCACAGGGGT
* *
100814362 TTCACACGGCCTGGAACACGCCCGTGTCTCAGGCCCGTATCC
1 TTCACACCGCCAGGAACACGCCCGTGTCTCA-GCCCGTATCC
* *
100814404 TTCACACCGCCAGG-ACATGCCCGTGTCTTAGCCCGT
1 TTCACACCGCCAGGAACACGCCCGTGTCTCAGCCCGT
100814440 GTGCAAAAAC
Statistics
Matches: 32, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
40 6 0.19
41 14 0.44
42 12 0.38
ACGTcount: A:0.17, C:0.40, G:0.23, T:0.21
Consensus pattern (41 bp):
TTCACACCGCCAGGAACACGCCCGTGTCTCAGCCCGTATCC
Found at i:100832729 original size:42 final size:42
Alignment explanation
Indices: 100832579--100832741 Score: 152
Period size: 42 Copynumber: 3.9 Consensus size: 42
100832569 ATACCAATGT
**** *
100832579 CATAGCCCAGATATGGTCTTACATGGGATCTCATATCGATGC
1 CATAGCCCAGATATGGTCTTACACAAAATCTCATAACGATGC
* * * * *
100832621 CAATAGCCCAGCTATGGTCTTACAC-TATTCTCATATCAATGC
1 C-ATAGCCCAGATATGGTCTTACACAAAATCTCATAACGATGC
* *
100832663 CAT-GTCCCAGACATGGTCTTACACAAAATCTCATAACGATGT
1 CATAG-CCCAGATATGGTCTTACACAAAATCTCATAACGATGC
* *
100832705 CATATCCCAAATATGGTCTTACACATAAA-CTCATAAC
1 CATAGCCCAGATATGGTCTTACACA-AAATCTCATAAC
100832742 CCTAATGTCA
Statistics
Matches: 100, Mismatches: 16, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
40 1 0.01
41 19 0.19
42 56 0.56
43 24 0.24
ACGTcount: A:0.32, C:0.26, G:0.13, T:0.28
Consensus pattern (42 bp):
CATAGCCCAGATATGGTCTTACACAAAATCTCATAACGATGC
Found at i:100832738 original size:84 final size:85
Alignment explanation
Indices: 100832556--100832739 Score: 196
Period size: 84 Copynumber: 2.2 Consensus size: 85
100832546 GGGAATCACA
* * **** *
100832556 TACACATAGAA-TCATACCAATGTCATAGCCCAGATATGGTCTTACATGGGATCTCATATCGATG
1 TACACATA-AACTCATACCAATGCCATAGCCCAGACATGGTCTTACACAAAATCTCATAACGATG
**
100832620 CCAATAGCCCAGCTATGGTCT
65 CCAATAGCCCAAATATGGTCT
** *
100832641 TACAC-TATTCTCATATCAATGCCAT-GTCCCAGACATGGTCTTACACAAAATCTCATAACGATG
1 TACACATAAACTCATACCAATGCCATAG-CCCAGACATGGTCTTACACAAAATCTCATAACGATG
* *
100832704 TC-ATATCCCAAATATGGTCT
65 CCAATAGCCCAAATATGGTCT
100832724 TACACATAAACTCATA
1 TACACATAAACTCATA
100832740 ACCCTAATGT
Statistics
Matches: 80, Mismatches: 16, Indels: 7
0.78 0.16 0.07
Matches are distributed among these distances:
83 21 0.26
84 54 0.68
85 5 0.06
ACGTcount: A:0.33, C:0.26, G:0.13, T:0.28
Consensus pattern (85 bp):
TACACATAAACTCATACCAATGCCATAGCCCAGACATGGTCTTACACAAAATCTCATAACGATGC
CAATAGCCCAAATATGGTCT
Found at i:100847417 original size:6 final size:6
Alignment explanation
Indices: 100847406--100847512 Score: 67
Period size: 6 Copynumber: 17.3 Consensus size: 6
100847396 TAGAACTAGC
* * *
100847406 ATCAGA ATCAGA ATCAGA ATTAG- GTGACAGA ATCAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* * * * *
100847455 ATCAGGTA A-CAAA ATCAAA ATCAGA ATTAGT ATCATGTA A-CAGA ATCAAA
1 ATCA-G-A ATCAGA ATCAGA ATCAGA ATCAGA ATCA-G-A ATCAGA ATCAGA
100847505 ATCAGA AT
1 ATCAGA AT
100847513 GTGAATGCAA
Statistics
Matches: 78, Mismatches: 14, Indels: 18
0.71 0.13 0.16
Matches are distributed among these distances:
5 5 0.06
6 62 0.79
7 8 0.10
8 3 0.04
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:100847443 original size:31 final size:31
Alignment explanation
Indices: 100847406--100847512 Score: 142
Period size: 31 Copynumber: 3.5 Consensus size: 31
100847396 TAGAACTAGC
* * * *
100847406 ATCAGAATCAGAATCAGAATTAGGTGACAGA
1 ATCAAAATCAGAATCAGTATCAGGTAACAGA
* *
100847437 ATCAGAATCAGAATCAGTATCAGGTAACAAA
1 ATCAAAATCAGAATCAGTATCAGGTAACAGA
* *
100847468 ATCAAAATCAGAATTAGTATCATGTAACAGA
1 ATCAAAATCAGAATCAGTATCAGGTAACAGA
100847499 ATCAAAATCAGAAT
1 ATCAAAATCAGAAT
100847513 GTGAATGCAA
Statistics
Matches: 68, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 68 1.00
ACGTcount: A:0.49, C:0.14, G:0.16, T:0.21
Consensus pattern (31 bp):
ATCAAAATCAGAATCAGTATCAGGTAACAGA
Found at i:100847951 original size:27 final size:27
Alignment explanation
Indices: 100847921--100848145 Score: 206
Period size: 27 Copynumber: 8.3 Consensus size: 27
100847911 AAGGTAAAAT
* *
100847921 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
100847948 GGTAATTCTACCTTAC-AGGAGTATTTT
1 GGTAATTTTACCCTACAAGG-GTATTTC
* * * * *
100847975 AGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
100848002 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
* * * *
100848029 GGTAATTCTACCCTATAGGGGTATTTT
1 GGTAATTTTACCCTACAAGGGTATTTC
* * *
100848056 AGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTTTACCCTACAAGGGTATTTC
**
100848083 AAT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
100848110 GGT-ATTTCTACCCTACAAGGGTATTTC
1 GGTAATTT-TACCCTACAAGGGTATTTC
*
100848137 GATAATTTT
1 GGTAATTTT
100848146 GTAAATCGAG
Statistics
Matches: 165, Mismatches: 27, Indels: 12
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.05
27 147 0.89
28 9 0.05
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (27 bp):
GGTAATTTTACCCTACAAGGGTATTTC
Found at i:100847980 original size:54 final size:54
Alignment explanation
Indices: 100847922--100848136 Score: 252
Period size: 54 Copynumber: 4.0 Consensus size: 54
100847912 AGGTAAAATG
* * * * *
100847922 GTAATTTTACCCCACAAGGGTATCTCGGTAATTCTACCTTAC-AGGAGTATTTTA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGG-GTATTTCA
* * * * *
100847976 GTAATTCTACCCTATAGGGGTATTTTGGTATTTCTACCCTACAAGGGTATTTCG
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * ** *
100848030 GTAATTCTACCCTATAGGGGTATTTTAGTAATTCTACCCTACAGGGGTATTTCA
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
* * *
100848084 ATATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTTC
1 GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTC
100848137 GATAATTTTG
Statistics
Matches: 138, Mismatches: 22, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 135 0.98
55 3 0.02
ACGTcount: A:0.25, C:0.20, G:0.18, T:0.37
Consensus pattern (54 bp):
GTAATTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAAGGGTATTTCA
Found at i:100848055 original size:81 final size:81
Alignment explanation
Indices: 100847920--100848135 Score: 317
Period size: 81 Copynumber: 2.7 Consensus size: 81
100847910 AAAGGTAAAA
* * * *
100847920 TGGTAATTT-TACCCCACAAGGGTATCTCGGTAATTCTACCTTACAGGAGTATTTTAGTAATTCT
1 TGGT-ATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCT
*
100847984 ACCCTATAGGGGTATTT
65 ACCCTACAGGGGTATTT
*
100848001 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTATAGGGGTATTTTAGTAATTCTA
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
100848066 CCCTACAGGGGTATTT
66 CCCTACAGGGGTATTT
*** * *
100848082 CAATATTTCTACCCTACAAGGGTATTTCGGTATTTCTACCCTACAAGGGTATTT
1 TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTT
100848136 CGATAATTTT
Statistics
Matches: 122, Mismatches: 12, Indels: 2
0.90 0.09 0.01
Matches are distributed among these distances:
80 4 0.03
81 118 0.97
ACGTcount: A:0.25, C:0.19, G:0.18, T:0.38
Consensus pattern (81 bp):
TGGTATTTCTACCCTACAAGGGTATTTCGGTAATTCTACCCTACAGGGGTATTTTAGTAATTCTA
CCCTACAGGGGTATTT
Found at i:100848223 original size:27 final size:26
Alignment explanation
Indices: 100848188--100848522 Score: 278
Period size: 27 Copynumber: 12.4 Consensus size: 26
100848178 TTAGGGGCAC
100848188 TTTGGTAATTTTACAAGTC-GAGGGTAT
1 TTTGGTAATTTTACAA-TCAG-GGGTAT
** *
100848215 TTTAATAATTTTACAGGTC-GAGGGTAT
1 TTTGGTAATTTTACA-ATCAG-GGGTAT
* *
100848242 TTTAGTAATTTCACAAATCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
*
100848269 TTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTACAATC-AGGGGTAT
* *
100848296 TTTGATAATTTTACGAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
100848323 TTTGGTAATTTTACAAATCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
* * * *
100848350 CTTGGTAATTTTATAAACAAAGGGTAT
1 TTTGGTAATTTTACAATC-AGGGGTAT
* *
100848377 TTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
** * *
100848404 TTTGGTAATTTTGTAAACTAAGGGTAT
1 TTTGGTAATTTTACAATC-AGGGGTAT
* * *
100848431 TTTTGTAATTTTATAAACCAGGGGTAT
1 TTTGGTAATTTTA-CAATCAGGGGTAT
* * * * *
100848458 TTTTGTGATTTTATAAACCAAGGGTAT
1 TTTGGTAATTTTA-CAATCAGGGGTAT
* *
100848485 TTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTAC-AATCAGGGGTAT
100848512 TTTGGTAATTT
1 TTTGGTAATTT
100848523 GGTAAACTAA
Statistics
Matches: 258, Mismatches: 40, Indels: 20
0.81 0.13 0.06
Matches are distributed among these distances:
26 9 0.03
27 238 0.92
28 11 0.04
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (26 bp):
TTTGGTAATTTTACAATCAGGGGTAT
Found at i:100848265 original size:81 final size:80
Alignment explanation
Indices: 100848188--100848522 Score: 320
Period size: 81 Copynumber: 4.1 Consensus size: 80
100848178 TTAGGGGCAC
* * ** *
100848188 TTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTCGA-GGGTATTTTAGTAATT
1 TTTGGTAATTTTACAA-ACAAGGGTATTTTAATAATTTTACAGAACCAGGGGTATTTTAGTAATT
100848252 TCACAAATCAGGGGTA
65 TCACAAATCAGGGGTA
* * *
100848268 TTTTGGTAATTTTACAAACTAGGGGTATTTTGATAATTTTAC-GAACCAGGGGTATTTTGGTAAT
1 -TTTGGTAATTTTACAAAC-AAGGGTATTTTAATAATTTTACAGAACCAGGGGTATTTTAGTAAT
*
100848332 TTTACAAATCAGGGGTA
64 TTCACAAATCAGGGGTA
* * *
100848349 TCTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACA-AACCAGGGGTATTTTGGTAAT
1 T-TTGGTAATTTTACAAAC-AAGGGTATTTTAATAATTTTACAGAACCAGGGGTATTTTAGTAAT
*** *
100848413 TTTGTAAA-CTAAGGGTA
64 TTCACAAATC-AGGGGTA
* * * ** * * *
100848430 TTTTTGTAATTTTATAAACCAGGGGTATTTTTGTGATTTTATA-AACCAAGGGTATTTTAGTAAT
1 -TTTGGTAATTTTACAAA-CAAGGGTATTTTAATAATTTTACAGAACCAGGGGTATTTTAGTAAT
* *
100848494 TTTACAAACCAGGGGTA
64 TTCACAAATCAGGGGTA
100848511 TTTTGGTAATTT
1 -TTTGGTAATTT
100848523 GGTAAACTAA
Statistics
Matches: 218, Mismatches: 28, Indels: 16
0.83 0.11 0.06
Matches are distributed among these distances:
80 6 0.03
81 209 0.96
82 3 0.01
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (80 bp):
TTTGGTAATTTTACAAACAAGGGTATTTTAATAATTTTACAGAACCAGGGGTATTTTAGTAATTT
CACAAATCAGGGGTA
Found at i:100848529 original size:27 final size:27
Alignment explanation
Indices: 100848236--100848522 Score: 349
Period size: 27 Copynumber: 10.6 Consensus size: 27
100848226 TACAGGTCGA
* * * *
100848236 GGGTATTTTAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
100848263 GGGTATTTTGGTAATTTTACAAACTAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* **
100848290 GGGTATTTTGATAATTTTACGAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
100848317 GGGTATTTTGGTAATTTTACAAATCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
100848344 GGGTATCTTGGTAATTTTATAAACAAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
100848371 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
100848398 GGGTATTTTGGTAATTTTGTAAACTAA
1 GGGTATTTTGGTAATTTTATAAACCAG
*
100848425 GGGTATTTTTGTAATTTTATAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
* * *
100848452 GGGTATTTTTGTGATTTTATAAACCAA
1 GGGTATTTTGGTAATTTTATAAACCAG
* *
100848479 GGGTATTTTAGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTATAAACCAG
100848506 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
100848523 GGTAAACTAA
Statistics
Matches: 224, Mismatches: 36, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 224 1.00
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.41
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTATAAACCAG
Found at i:100848529 original size:54 final size:54
Alignment explanation
Indices: 100848188--100848522 Score: 393
Period size: 54 Copynumber: 6.2 Consensus size: 54
100848178 TTAGGGGCAC
* ** * * ***
100848188 TTTGGTAATTTTACAAGTCGAGGGTATTTTAATAATTTTACAGGTC-GAGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAG-GGGTAT
* * * * * * *
100848242 TTTAGTAATTTCACAAATCAGGGGTATTTTGGTAATTTTACAAACTAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* ** * * *
100848296 TTTGATAATTTTACGAACCAGGGGTATTTTGGTAATTTTACAAATCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* *
100848350 CTTGGTAATTTTATAAACAAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* * * *
100848404 TTTGGTAATTTTGTAAACTAAGGGTATTTTTGTAATTTTATAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
* *
100848458 TTTTGTGATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
1 TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
100848512 TTTGGTAATTT
1 TTTGGTAATTT
100848523 GGTAAACTAA
Statistics
Matches: 241, Mismatches: 39, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
54 240 1.00
55 1 0.00
ACGTcount: A:0.30, C:0.08, G:0.21, T:0.41
Consensus pattern (54 bp):
TTTGGTAATTTTATAAACCAAGGGTATTTTAGTAATTTTACAAACCAGGGGTAT
Found at i:100849874 original size:23 final size:23
Alignment explanation
Indices: 100849846--100849891 Score: 83
Period size: 23 Copynumber: 2.0 Consensus size: 23
100849836 GTTTTGGCCG
100849846 AACCCTTGAAGGTTTTGTTTCTT
1 AACCCTTGAAGGTTTTGTTTCTT
*
100849869 AACCCTTGGAGGTTTTGTTTCTT
1 AACCCTTGAAGGTTTTGTTTCTT
100849892 TTCTTTCTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.15, C:0.17, G:0.20, T:0.48
Consensus pattern (23 bp):
AACCCTTGAAGGTTTTGTTTCTT
Found at i:100853886 original size:40 final size:40
Alignment explanation
Indices: 100853830--100853907 Score: 111
Period size: 40 Copynumber: 1.9 Consensus size: 40
100853820 AAAACCACAG
* *
100853830 CTATAGATCGAGCATTAGCGGCGCTTTTTGAAAAACACCA
1 CTATAGATCGACCATTAGCGGCGCTTTCTGAAAAACACCA
* * *
100853870 CTATAGGTCGACCATTAGCTGCTCTTTCTGAAAAACAC
1 CTATAGATCGACCATTAGCGGCGCTTTCTGAAAAACAC
100853908 TACAAAAAAA
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 33 1.00
ACGTcount: A:0.31, C:0.24, G:0.18, T:0.27
Consensus pattern (40 bp):
CTATAGATCGACCATTAGCGGCGCTTTCTGAAAAACACCA
Found at i:100854041 original size:114 final size:114
Alignment explanation
Indices: 100853841--100854147 Score: 350
Period size: 114 Copynumber: 2.7 Consensus size: 114
100853831 TATAGATCGA
* * *
100853841 GCATTAGCGGCGCTTTTTGAAAAACACCACTATAGGTCGACCATTAGC-TGCTCTTTCTGAAAAA
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCAT-CGCTTTCTGAAAAA
** *
100853905 CACTACAAAAAAATTAAGCACAACGCCGTCGTTTTATGTGAGCTTTAATG
65 CACCGCAAAAAAATTAAGCACAACGCCGTCGTTTTATATGAGCTTTAATG
* * * ** *
100853955 GCATTAGTGGTACTTTTTAAAAAATGCCATTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
* * * * *
100854020 GCCGCAAAAAAATTAAGCACAACGTCGTTGTTTTCTATGAGCTTTAGTG
66 ACCGCAAAAAAATTAAGCACAACGCCGTCGTTTTATATGAGCTTTAATG
* * ** * * *
100854069 GCATTAGCGGCGCTTTTTGAAAAACACC-GTATAGACCAAGCATTAGCAGCGCTTTTTGAAAAAC
1 GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
* *
100854133 CCCG-TAAAAAATTAA
66 ACCGCAAAAAAATTAA
100854148 TTTAGTTTAT
Statistics
Matches: 161, Mismatches: 31, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
112 10 0.06
113 33 0.20
114 117 0.73
115 1 0.01
ACGTcount: A:0.33, C:0.20, G:0.18, T:0.28
Consensus pattern (114 bp):
GCATTAGCGGCACTTTTTGAAAAACACCACTATAGGTCGAGCATTAGCATCGCTTTCTGAAAAAC
ACCGCAAAAAAATTAAGCACAACGCCGTCGTTTTATATGAGCTTTAATG
Found at i:100854214 original size:21 final size:21
Alignment explanation
Indices: 100854190--100854239 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
100854180 GCTTATAATT
*
100854190 TAGGTTTTTTGGTTTATGGTC
1 TAGGTTTTATGGTTTATGGTC
* *
100854211 TAGGATTTATGGTTTATGGTT
1 TAGGTTTTATGGTTTATGGTC
100854232 TAAGGTTT
1 T-AGGTTT
100854240 GGGGGTAAAT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
21 19 0.79
22 5 0.21
ACGTcount: A:0.16, C:0.02, G:0.28, T:0.54
Consensus pattern (21 bp):
TAGGTTTTATGGTTTATGGTC
Done.