Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 31 of 297
Found at i:10651678 original size:54 final size:53
Alignment explanation
Indices: 10651603--10651802 Score: 193
Period size: 54 Copynumber: 3.7 Consensus size: 53
10651593 ATACCCCCAG
* *
10651603 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGGT
1 TTGTAAAATTACCAAA-TACCCCCGATTTATAAAATTACCGAAATACCCTCGGT
* * * * * *
10651657 TTGCAAAATTACTGAAATACCCTCGATTTGTAAAATTAACGAAATACCCTCAGT
1 TTGTAAAATTAC-CAAATACCCCCGATTTATAAAATTACCGAAATACCCTCGGT
* * * * * * * **
10651711 TTGTAAAATTACTGAAACACCCTCAATTTGTAAAATTACTGAAATACCCTTGAC
1 TTGTAAAATTAC-CAAATACCCCCGATTTATAAAATTACCGAAATACCCTCGGT
* *
10651765 TTGTAAAATTACCAATGTACCCCCGATTTACAAAATTA
1 TTGTAAAATTACCAA-ATACCCCCGATTTATAAAATTA
10651803 TCATTTTACC
Statistics
Matches: 120, Mismatches: 24, Indels: 4
0.81 0.16 0.03
Matches are distributed among these distances:
53 2 0.02
54 115 0.96
55 3 0.03
ACGTcount: A:0.39, C:0.21, G:0.10, T:0.30
Consensus pattern (53 bp):
TTGTAAAATTACCAAATACCCCCGATTTATAAAATTACCGAAATACCCTCGGT
Found at i:10651814 original size:81 final size:80
Alignment explanation
Indices: 10651603--10651840 Score: 255
Period size: 81 Copynumber: 2.9 Consensus size: 80
10651593 ATACCCCCAG
* * *
10651603 TTGTAAAATTACCAAAGTACCCCCGATTTATAAAATTACCCAAATATCCTCGGTTTGCAAAATTA
1 TTGTAAAATTACC-AAGTACCCCCGATTTATAAAATTACTCAAATACCCTCGATTTGCAAAATTA
*
10651668 CTGAAATACCCTCGAT
65 CTGAAATACCCTCGAC
* * * * * * * *
10651684 TTGTAAAATTAACGAAATACCCTC-AGTTTGTAAAATTACTGAAACACCCTCAATTTGTAAAATT
1 TTGTAAAATT-ACCAAGTACCCCCGA-TTTATAAAATTACTCAAATACCCTCGATTTGCAAAATT
*
10651748 ACTGAAATACCCTTGAC
64 ACTGAAATACCCTCGAC
* ** *
10651765 TTGTAAAATTACCAATGTACCCCCGATTTACAAAATTA-TCATTTTACCCTCGATTTACAAAATT
1 TTGTAAAATTACCAA-GTACCCCCGATTTATAAAATTACTCA-AATACCCTCGATTTGCAAAATT
*
10651829 ATTGAAATACCC
64 ACTGAAATACCC
10651841 CTGTAGGATA
Statistics
Matches: 126, Mismatches: 26, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
80 7 0.06
81 116 0.92
82 3 0.02
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.32
Consensus pattern (80 bp):
TTGTAAAATTACCAAGTACCCCCGATTTATAAAATTACTCAAATACCCTCGATTTGCAAAATTAC
TGAAATACCCTCGAC
Found at i:10651855 original size:27 final size:27
Alignment explanation
Indices: 10651832--10652155 Score: 396
Period size: 27 Copynumber: 12.0 Consensus size: 27
10651822 CAAAATTATT
* *
10651832 GAAATACCCCTGTAGGATAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
10651859 GAAATAGCCTTGTAGGGTAGAAATATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
10651886 GAAATACCCTTGTAGGGTAGAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
10651913 GAAATACCCCTATAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
10651940 GAAATATCCCTGTAGGGTAGAATTATC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * *
10651967 GAAATACCCTTGTAGGGTAAAAATACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
10651994 GAAATACCCTTATAGGGTAGAAATACT
1 GAAATACCCCTGTAGGGTAGAATTACC
*
10652021 AAAATACCCCTGTAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
10652048 GAAATACCCCTGTAAGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
*
10652075 GAAATACCCCTGTAGGGTAGAATTACT
1 GAAATACCCCTGTAGGGTAGAATTACC
* *
10652102 AAAATACCCCTATAGGGTAGAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
* * * *
10652129 GAGATACCCTTGTGGGGTAAAATTACC
1 GAAATACCCCTGTAGGGTAGAATTACC
10652156 ATTTTACCCC
Statistics
Matches: 255, Mismatches: 42, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 255 1.00
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (27 bp):
GAAATACCCCTGTAGGGTAGAATTACC
Found at i:10652166 original size:81 final size:81
Alignment explanation
Indices: 10651823--10652155 Score: 452
Period size: 81 Copynumber: 4.1 Consensus size: 81
10651813 CTCGATTTAC
** * * * * * * *
10651823 AAAATTATTGAAATACCCCTGTAGGATAGAATTACTGAAATAGCCTTGTAGGGTAGAAATATCGA
1 AAAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGA
10651888 AATACCCTTGTAGGGT
66 AATACCCTTGTAGGGT
* * *
10651904 AGAAA-TACCGAAATACCCCTATAGGGTAGAATTACTGAAATATCCCTGTAGGGTAGAATTATCG
1 A-AAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCG
10651968 AAATACCCTTGTAGGGT
65 AAATACCCTTGTAGGGT
* * *
10651985 AAAAATACCGAAATACCCTTATAGGGTAGAAATACTAAAATACCCCTGTAGGGTAGAATTACCGA
1 AAAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGA
* *
10652050 AATACCCCTGTAAGGT
66 AATACCCTTGTAGGGT
* * *
10652066 AGAATTACCGAAATACCCCTGTAGGGTAGAATTACTAAAATACCCCTATAGGGTAGAATTACCGA
1 AAAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGA
* *
10652131 GATACCCTTGTGGGGT
66 AATACCCTTGTAGGGT
10652147 AAAATTACC
1 AAAATTACC
10652156 ATTTTACCCC
Statistics
Matches: 225, Mismatches: 25, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
80 3 0.01
81 219 0.97
82 3 0.01
ACGTcount: A:0.37, C:0.18, G:0.20, T:0.25
Consensus pattern (81 bp):
AAAATTACCGAAATACCCCTATAGGGTAGAATTACTAAAATACCCCTGTAGGGTAGAATTACCGA
AATACCCTTGTAGGGT
Found at i:10652425 original size:27 final size:27
Alignment explanation
Indices: 10652380--10652459 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
10652370 GGAGGAAGCG
*
10652380 TTCTGGTGGCTATGCCACAAATATCT-A
1 TTCTGGTGGCTTTGCCAC-AATATCTGA
*
10652407 TTCTGGTGGCTTTGGCACAATATCTGA
1 TTCTGGTGGCTTTGCCACAATATCTGA
* * *
10652434 ATCTGGTGACTTTGTCACAATATCTG
1 TTCTGGTGGCTTTGCCACAATATCTG
10652460 TTGACCGATC
Statistics
Matches: 47, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
26 7 0.15
27 40 0.85
ACGTcount: A:0.23, C:0.20, G:0.21, T:0.36
Consensus pattern (27 bp):
TTCTGGTGGCTTTGCCACAATATCTGA
Found at i:10652727 original size:27 final size:27
Alignment explanation
Indices: 10652674--10652755 Score: 87
Period size: 27 Copynumber: 3.1 Consensus size: 27
10652664 ATTTTGTTAA
* *
10652674 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
10652701 GTGGCTCTGCCACAATATCTG-TATCTG
1 GTGGCTCTGCCACAATATCTGAT-TCTG
* * * *
10652728 ATGACTCTGTCACAATATC-AATTCTG
1 GTGGCTCTGCCACAATATCTGATTCTG
10652754 GT
1 GT
10652756 AGCCATGCTG
Statistics
Matches: 46, Mismatches: 7, Indels: 5
0.79 0.12 0.09
Matches are distributed among these distances:
26 6 0.13
27 40 0.87
ACGTcount: A:0.21, C:0.23, G:0.20, T:0.37
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGATTCTG
Found at i:10659736 original size:48 final size:49
Alignment explanation
Indices: 10659665--10659975 Score: 255
Period size: 48 Copynumber: 6.5 Consensus size: 49
10659655 TGAAGTAACA
* *
10659665 ATGCCATGTTCCC-GACATGGTCTTACA-TGAATC-CACATATCATCGCCG
1 ATGCCATG-TCCCAAACATGGTCTTACACTG-AGCACACATATCATCGCCG
* * **
10659713 ATGCCATGTCCCAAAAATGGTCTTACACTG-GCACACATATCATTGCTA
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACACATATCATCGCCG
* * * * *
10659761 ATTCCATGTCCCAGACATGGTCTTACAC-AAGCACATATATCATCACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACACATATCATCGCCG
**
10659809 ATGCCATGTCCCGGACATGGTCTTACACT-AGCACAC--ATCATCGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACACATATCATCGCCG
* * * * * *
10659855 ATGCCATGTCCCAAACTTGGCCTTACACAG-GCACATATATAATTGCCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACACATATCATCGCCG
* * * ** * * * * *
10659903 ATGCCATTTCCTAGACGCGGTCTTACACT-AACAAATATATAATCACCG
1 ATGCCATGTCCCAAACATGGTCTTACACTGAGCACACATATCATCGCCG
* *
10659951 ATGTCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAAACATGGTCTTA
10659976 TACAGGCACA
Statistics
Matches: 211, Mismatches: 43, Indels: 18
0.78 0.16 0.07
Matches are distributed among these distances:
46 38 0.18
47 5 0.02
48 166 0.79
49 2 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (49 bp):
ATGCCATGTCCCAAACATGGTCTTACACTGAGCACACATATCATCGCCG
Found at i:10659832 original size:96 final size:94
Alignment explanation
Indices: 10659663--10659986 Score: 283
Period size: 96 Copynumber: 3.4 Consensus size: 94
10659653 ATTGAAGTAA
* * *
10659663 CAATGCCATGTTCCC-GACATGGTCTTACATGAATC-CACATATCATCGCCGATGCCATGTCCCA
1 CAATGCCATG-TCCCAGACATGGTCTTACA-CAAGCACATATATCATCGCCGATGCCATGTCCCA
* *
10659726 AAAATGGTCTTACACTGGCACACATATCATTGC
64 AAAATGGTCTTACACTAGCACAC--ATCATCGC
* * * **
10659759 TAATTCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCACCGATGCCATGTCCCGGA
1 CAATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAAA
*
10659824 CATGGTCTTACACTAGCACACATCATCGC
66 AATGGTCTTACACTAGCACACATCATCGC
* * * * * * * * * *
10659853 CGATGCCATGTCCCAAACTTGGCCTTACACAGGCACATATATAATTGCCGATGCCATTTCCTAGA
1 CAATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAAA
*** * * * * *
10659918 CGCGGTCTTACACTAACAAATATATAATCAC
66 AATGGTCTTACACTAGC--ACACATCATCGC
* * * *
10659949 CGATGTCATGTCCCAGACATGGTCTTATACAGGCACAT
1 CAATGCCATGTCCCAGACATGGTCTTACACAAGCACAT
10659987 TTTGCACGTT
Statistics
Matches: 188, Mismatches: 36, Indels: 8
0.81 0.16 0.03
Matches are distributed among these distances:
94 73 0.39
95 7 0.04
96 108 0.57
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (94 bp):
CAATGCCATGTCCCAGACATGGTCTTACACAAGCACATATATCATCGCCGATGCCATGTCCCAAA
AATGGTCTTACACTAGCACACATCATCGC
Found at i:10659985 original size:142 final size:142
Alignment explanation
Indices: 10659665--10659975 Score: 385
Period size: 142 Copynumber: 2.2 Consensus size: 142
10659655 TGAAGTAACA
* *
10659665 ATGCCATGTTCCC-GACATGGTCTTACA-TGAATCCACATATCATCGCCGATGCCATGTCCCAAA
1 ATGCCATG-TCCCAGACATGGTCTTACACT--A-GCACACATCATCGCCGATGCCATGTCCCAAA
* * * * * *
10659728 AATGGTCTTACACTGGCACACATATCATTGCTAATTCCATGTCCCAGACATGGTCTTACACAAGC
62 AATGGCCTTACACAGGCACACATATAATTGCCAATGCCATGTCCCAGACACGGTCTTACACAAGC
* *
10659793 ACATATATCATCACCG
127 AAATATATAATCACCG
* **
10659809 ATGCCATGTCCCGGACATGGTCTTACACTAGCACACATCATCGCCGATGCCATGTCCCAAACTTG
1 ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCATCGCCGATGCCATGTCCCAAAAATG
* * * * *
10659874 GCCTTACACAGGCACATATATAATTGCCGATGCCATTTCCTAGACGCGGTCTTACACTAA-CAAA
66 GCCTTACACAGGCACACATATAATTGCCAATGCCATGTCCCAGACACGGTCTTACAC-AAGCAAA
10659938 TATATAATCACCG
130 TATATAATCACCG
*
10659951 ATGTCATGTCCCAGACATGGTCTTA
1 ATGCCATGTCCCAGACATGGTCTTA
10659976 TACAGGCACA
Statistics
Matches: 145, Mismatches: 19, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
142 115 0.79
143 7 0.05
144 22 0.15
145 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.26
Consensus pattern (142 bp):
ATGCCATGTCCCAGACATGGTCTTACACTAGCACACATCATCGCCGATGCCATGTCCCAAAAATG
GCCTTACACAGGCACACATATAATTGCCAATGCCATGTCCCAGACACGGTCTTACACAAGCAAAT
ATATAATCACCG
Found at i:10662292 original size:48 final size:48
Alignment explanation
Indices: 10662220--10662317 Score: 187
Period size: 48 Copynumber: 2.0 Consensus size: 48
10662210 CAATGACCCA
*
10662220 CACCGCATCATTCTTACTCGGTGTCAGAAGTAAGCCCGATACAAAATC
1 CACCGCATCATTCTTACTCAGTGTCAGAAGTAAGCCCGATACAAAATC
10662268 CACCGCATCATTCTTACTCAGTGTCAGAAGTAAGCCCGATACAAAATC
1 CACCGCATCATTCTTACTCAGTGTCAGAAGTAAGCCCGATACAAAATC
10662316 CA
1 CA
10662318 TGGTAATTCA
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.33, C:0.30, G:0.15, T:0.22
Consensus pattern (48 bp):
CACCGCATCATTCTTACTCAGTGTCAGAAGTAAGCCCGATACAAAATC
Found at i:10668424 original size:40 final size:40
Alignment explanation
Indices: 10668333--10668552 Score: 232
Period size: 40 Copynumber: 5.5 Consensus size: 40
10668323 ACCCAAGTAT
* ** * *
10668333 CTTCGGGAATTAG-CCGGATATAACCACTCGCAC-AAGGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
** * *
10668371 CTTCGGGTTTTAGCCCGGATATGGTCACTAGCATAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* *
10668411 CTTCGAGACTTAGCCCGGATATAGTCGCTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
* * *
10668451 CTTTGGGTCTTAGCCCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
** * *
10668491 CTTC-GGATCTTATTCCGGATATAGTCACTAGCATAAAAGC
1 CTTCGGGA-CTTAGCCCGGATATAGTCACTAGCACAAATGC
10668531 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
10668553 CATTCGAATA
Statistics
Matches: 148, Mismatches: 28, Indels: 10
0.80 0.15 0.05
Matches are distributed among these distances:
38 11 0.07
39 18 0.12
40 115 0.78
41 4 0.03
ACGTcount: A:0.26, C:0.26, G:0.23, T:0.25
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:10669079 original size:73 final size:73
Alignment explanation
Indices: 10668960--10669104 Score: 281
Period size: 73 Copynumber: 2.0 Consensus size: 73
10668950 TTTAACAAAT
*
10668960 AAATTGATTTAATCATTTTGAACATCAAGGAGAAATTCAAGGTACTTAGCCCATGTATATTAGGC
1 AAATTGATTTAATCATTTTGAACATCAAGGAGAAATTCAAGGTACTTAGCCCATGTACATTAGGC
10669025 ATTAGAGC
66 ATTAGAGC
10669033 AAATTGATTTAATCATTTTGAACATCAAGGAGAAATTCAAGGTACTTAGCCCATGTACATTAGGC
1 AAATTGATTTAATCATTTTGAACATCAAGGAGAAATTCAAGGTACTTAGCCCATGTACATTAGGC
10669098 ATTAGAG
66 ATTAGAG
10669105 TCATATATGT
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
73 71 1.00
ACGTcount: A:0.37, C:0.14, G:0.18, T:0.31
Consensus pattern (73 bp):
AAATTGATTTAATCATTTTGAACATCAAGGAGAAATTCAAGGTACTTAGCCCATGTACATTAGGC
ATTAGAGC
Found at i:10676608 original size:40 final size:40
Alignment explanation
Indices: 10676562--10676745 Score: 237
Period size: 40 Copynumber: 4.6 Consensus size: 40
10676552 CTCGCACAAG
*
10676562 GCCTTCGGGTCTTAGCCCGGATATGGTCACTAGCAAAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAAAAAT
* * *
10676602 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAAAAAT
* * *
10676642 GCCTTCAGGTCTTAGCCCGGATATAG-CAACTCGCACAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTC-ACTAGCAAAAAT
* *
10676682 GCCTTCGGATCTTAGTCCGGATATAGTCACTAGCATAAAAT
1 GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCA-AAAAT
**
10676723 -CCTTCGGCACTTAGCCCGGATAT
1 GCCTTCGGGTCTTAGCCCGGATAT
10676746 CATTCTAATA
Statistics
Matches: 125, Mismatches: 16, Indels: 6
0.85 0.11 0.04
Matches are distributed among these distances:
39 1 0.01
40 119 0.95
41 5 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
GCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCAAAAAT
Found at i:10679329 original size:48 final size:48
Alignment explanation
Indices: 10679100--10679329 Score: 293
Period size: 48 Copynumber: 4.8 Consensus size: 48
10679090 ATTTCATTTT
* * *
10679100 CGATGCCATGTCCTAGACATGGTCTTACACTGGCACACATATCATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCAC
* * * * *
10679148 TGATGCCATGTCCTAGACATGGTATTACACAGGCACATATATCATCGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCAC
* *
10679196 CGATGCCATGTCCCAGACATGGACTTACACTGGCATATATATCATCAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCAC
* * *
10679244 CGATGACATGTCCCAGACATGGTCTTATACTGGCACATATATAATCAC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCAC
* *
10679292 CGATGCTC-TGTCCCGGAGATGGTCTTACA-TAGGCACAT
1 CGATGC-CATGTCCCAGACATGGTCTTACACT-GGCACAT
10679330 TTAGCACAGT
Statistics
Matches: 160, Mismatches: 20, Indels: 4
0.87 0.11 0.02
Matches are distributed among these distances:
47 1 0.01
48 158 0.99
49 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCACATATATCATCAC
Found at i:10700305 original size:93 final size:93
Alignment explanation
Indices: 10700197--10700368 Score: 308
Period size: 93 Copynumber: 1.8 Consensus size: 93
10700187 CGCCCATAAG
* *
10700197 CGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
10700262 ACGAGTTCGGATGCCTAGTTACATCTCA
66 ACGAGTTCGGATGCCTAGTTACATCTCA
* *
10700290 CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
10700355 ACGAGTTCGGATGC
66 ACGAGTTCGGATGC
10700369 TCAACCATCC
Statistics
Matches: 75, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (93 bp):
CGAACTCGAACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:10700365 original size:46 final size:46
Alignment explanation
Indices: 10700190--10700365 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 46
10700180 TGTAACCCGC
* * * *
10700190 CCATAAGCGAACTCGAACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
* *
10700236 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
*
10700286 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
10700329 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGA
10700366 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 62 0.56
47 29 0.26
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.30, C:0.30, G:0.20, T:0.20
Consensus pattern (46 bp):
CCATAAGCGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:10700384 original size:46 final size:46
Alignment explanation
Indices: 10700239--10700377 Score: 144
Period size: 47 Copynumber: 3.0 Consensus size: 46
10700229 TTCGCATCCA
10700239 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC-CTAGTTA-CATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-A---ACCATC
* * * * *
10700287 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA--
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--ATGCTCAACCATC
10700332 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
10700378 CTAGTGACAT
Statistics
Matches: 75, Mismatches: 9, Indels: 16
0.75 0.09 0.16
Matches are distributed among these distances:
44 8 0.11
45 2 0.03
46 28 0.37
47 30 0.40
48 2 0.03
49 4 0.05
50 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCTCAACCATC
Found at i:10704017 original size:46 final size:46
Alignment explanation
Indices: 10703950--10704043 Score: 188
Period size: 46 Copynumber: 2.0 Consensus size: 46
10703940 CTAACATTTT
10703950 AACTTTTTACAATTTAGTCCTTAAGCTCATAAATTGACATCAAAAC
1 AACTTTTTACAATTTAGTCCTTAAGCTCATAAATTGACATCAAAAC
10703996 AACTTTTTACAATTTAGTCCTTAAGCTCATAAATTGACATCAAAAC
1 AACTTTTTACAATTTAGTCCTTAAGCTCATAAATTGACATCAAAAC
10704042 AA
1 AA
10704044 TTTCATCCTC
Statistics
Matches: 48, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 48 1.00
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.34
Consensus pattern (46 bp):
AACTTTTTACAATTTAGTCCTTAAGCTCATAAATTGACATCAAAAC
Found at i:10707949 original size:42 final size:43
Alignment explanation
Indices: 10707890--10707971 Score: 148
Period size: 42 Copynumber: 1.9 Consensus size: 43
10707880 TAGATATAGT
*
10707890 ACTATAGATAAGGTAGTATTAAGGCTAC-AAACTGAGACTAGC
1 ACTATAGATAAGGTAGTATTAAAGCTACAAAACTGAGACTAGC
10707932 ACTATAGATAAGGTAGTATTAAAGCTACAAAACTGAGACT
1 ACTATAGATAAGGTAGTATTAAAGCTACAAAACTGAGACT
10707972 GTAGGGAAAA
Statistics
Matches: 38, Mismatches: 1, Indels: 1
0.95 0.03 0.03
Matches are distributed among these distances:
42 27 0.71
43 11 0.29
ACGTcount: A:0.43, C:0.13, G:0.20, T:0.24
Consensus pattern (43 bp):
ACTATAGATAAGGTAGTATTAAAGCTACAAAACTGAGACTAGC
Found at i:10708335 original size:38 final size:38
Alignment explanation
Indices: 10708278--10708351 Score: 130
Period size: 38 Copynumber: 1.9 Consensus size: 38
10708268 AGGGGACGAC
*
10708278 GCTCTGTCCCAGGATATGTTGAGAGTTTTGGAAAGGAT
1 GCTCTGTCCCAGGACATGTTGAGAGTTTTGGAAAGGAT
*
10708316 GCTCTGTCCCAGGCCATGTTGAGAGTTTTGGAAAGG
1 GCTCTGTCCCAGGACATGTTGAGAGTTTTGGAAAGG
10708352 GTGGCCAGAG
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
38 34 1.00
ACGTcount: A:0.22, C:0.16, G:0.32, T:0.30
Consensus pattern (38 bp):
GCTCTGTCCCAGGACATGTTGAGAGTTTTGGAAAGGAT
Found at i:10714396 original size:29 final size:29
Alignment explanation
Indices: 10714331--10714403 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
10714321 ATAGTAAGTC
10714331 CGCACACTTAGTGCT-TAATAATCAAACT
1 CGCACACTTAGTGCTATAATAATCAAACT
* *
10714359 CGCACACTTAGTGCTATACA-ATTTAAACT
1 CGCACACTTAGTGCTATA-ATAATCAAACT
10714388 CGCACACTTAGTGCTA
1 CGCACACTTAGTGCTA
10714404 ATCTCATTAT
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
28 15 0.37
29 25 0.61
30 1 0.02
ACGTcount: A:0.33, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CGCACACTTAGTGCTATAATAATCAAACT
Found at i:10715484 original size:66 final size:66
Alignment explanation
Indices: 10715407--10715537 Score: 244
Period size: 66 Copynumber: 2.0 Consensus size: 66
10715397 TTGAGTTAGC
10715407 CGAATGTCTAGAGCATTTATTCCTTCCTTCTCCTAACTCACGGCAATTGCAAAAAGAAAGAAGAT
1 CGAATGTCTAGAGCATTTATTCCTTCCTTCTCCTAACTCACGGCAATTGCAAAAAGAAAGAAGAT
10715472 T
66 T
* *
10715473 CGAATGTCTAGAGCATTTCTTCCTTCCTTCTCCTAACTCACGGCAATTGGAAAAAGAAAGAAGAT
1 CGAATGTCTAGAGCATTTATTCCTTCCTTCTCCTAACTCACGGCAATTGCAAAAAGAAAGAAGAT
10715538 GAATACTCCC
Statistics
Matches: 63, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 63 1.00
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (66 bp):
CGAATGTCTAGAGCATTTATTCCTTCCTTCTCCTAACTCACGGCAATTGCAAAAAGAAAGAAGAT
T
Found at i:10721874 original size:93 final size:93
Alignment explanation
Indices: 10721762--10721933 Score: 299
Period size: 93 Copynumber: 1.8 Consensus size: 93
10721752 GTCCATAAGC
* *
10721762 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10721827 CGAGCTCGGATGCCTAGTTACATCTCAA
66 CGAGCTCGGATGCCTAGTTACATCTCAA
* *
10721855 GAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
10721920 CGAGTTCGGATGCC
66 CGAGCTCGGATGCC
10721934 CAAATATCCC
Statistics
Matches: 74, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACGCTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAA
Found at i:10721929 original size:46 final size:46
Alignment explanation
Indices: 10721753--10721932 Score: 224
Period size: 46 Copynumber: 3.9 Consensus size: 46
10721743 ATGTAACCCG
* ** *
10721753 TCCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCA
*
10721799 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACA
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATG-CTCG---CA
*
10721849 T-C-TCAA--GAACTCGGACTCAACTCAACGAGTTCGGATGCTCGCA
1 TCCAT-AAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCA
*
10721892 TCCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGC
1 TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGC
10721933 CCAAATATCC
Statistics
Matches: 118, Mismatches: 7, Indels: 18
0.83 0.05 0.13
Matches are distributed among these distances:
43 3 0.03
44 3 0.03
45 1 0.01
46 72 0.61
47 32 0.27
48 1 0.01
49 3 0.03
50 3 0.03
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (46 bp):
TCCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCTCGCA
Found at i:10721948 original size:46 final size:45
Alignment explanation
Indices: 10721805--10721948 Score: 148
Period size: 46 Copynumber: 3.1 Consensus size: 45
10721795 CGCATCCATA
* * *
10721805 AGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTTACATCTC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCA---ACATCCC
* * * *
10721853 A-AGAACTCGGACTCAACTCAACGAGTTCGGATGCTC-GCATCCATA
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCC--C
*
10721898 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAAATATCCC
1 AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCC-AACATCCC
10721944 AGTGA
1 AGTGA
10721949 CATGTCACTT
Statistics
Matches: 79, Mismatches: 12, Indels: 12
0.77 0.12 0.12
Matches are distributed among these distances:
43 4 0.05
45 1 0.01
46 38 0.48
47 31 0.39
48 5 0.06
ACGTcount: A:0.30, C:0.28, G:0.21, T:0.21
Consensus pattern (45 bp):
AGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCCAACATCCC
Found at i:10727984 original size:30 final size:30
Alignment explanation
Indices: 10727939--10728027 Score: 94
Period size: 30 Copynumber: 3.0 Consensus size: 30
10727929 CAAAGATAAC
*
10727939 AAGAAAACC-GAATAAAGAAATCCAAGATA
1 AAGAAACCCGGAATAAAGAAATCCAAGATA
*
10727968 GAGAAACCCGGAATAAAGAAATCC-AGAGTA
1 AAGAAACCCGGAATAAAGAAATCCAAGA-TA
* * *
10727998 AAGAGATCCAGG-ATAAAGAAACCCAAGATA
1 AAGA-AACCCGGAATAAAGAAATCCAAGATA
10728028 CGATACTATG
Statistics
Matches: 50, Mismatches: 6, Indels: 7
0.79 0.10 0.11
Matches are distributed among these distances:
29 10 0.20
30 32 0.64
31 8 0.16
ACGTcount: A:0.55, C:0.16, G:0.19, T:0.10
Consensus pattern (30 bp):
AAGAAACCCGGAATAAAGAAATCCAAGATA
Found at i:10728027 original size:15 final size:15
Alignment explanation
Indices: 10727950--10728027 Score: 70
Period size: 15 Copynumber: 5.2 Consensus size: 15
10727940 AGAAAACCGA
10727950 ATAAAGAAATCCAAG
1 ATAAAGAAATCCAAG
* **
10727965 ATAGAGAAA-CCCGG
1 ATAAAGAAATCCAAG
10727979 AATAAAGAAATCC-AG
1 -ATAAAGAAATCCAAG
* *
10727994 AGTAAAGAGATCCAGG
1 A-TAAAGAAATCCAAG
*
10728010 ATAAAGAAACCCAAG
1 ATAAAGAAATCCAAG
10728025 ATA
1 ATA
10728028 CGATACTATG
Statistics
Matches: 49, Mismatches: 10, Indels: 8
0.73 0.15 0.12
Matches are distributed among these distances:
14 4 0.08
15 41 0.84
16 4 0.08
ACGTcount: A:0.54, C:0.15, G:0.19, T:0.12
Consensus pattern (15 bp):
ATAAAGAAATCCAAG
Found at i:10731077 original size:93 final size:93
Alignment explanation
Indices: 10730965--10731135 Score: 315
Period size: 93 Copynumber: 1.8 Consensus size: 93
10730955 GCCCATAAGT
* *
10730965 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10731030 CGAGTTCGGATGCCTAGTTACATTTCAC
66 CGAGTTCGGATGCCTAGTTACATTTCAC
*
10731058 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
10731123 CGAGTTCGGATGC
66 CGAGTTCGGATGC
10731136 TCAACCATCC
Statistics
Matches: 75, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
93 75 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATTTCAC
Found at i:10731132 original size:46 final size:46
Alignment explanation
Indices: 10730957--10731132 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
10730947 TGTAACCCGC
* * *
10730957 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
*
10731003 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCAT
* * *
10731053 --TTCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
10731096 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
10731133 TGCTCAACCA
Statistics
Matches: 110, Mismatches: 11, Indels: 18
0.79 0.08 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 64 0.58
47 29 0.26
48 2 0.02
49 1 0.01
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:10733579 original size:15 final size:15
Alignment explanation
Indices: 10733530--10733600 Score: 56
Period size: 15 Copynumber: 4.7 Consensus size: 15
10733520 CAAGGAAACT
*
10733530 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
* *
10733545 -AGATAGAGAAA-CCC
1 GA-ATAAAGAAATCCA
10733559 GAAATAAAGAAATCCA
1 G-AATAAAGAAATCCA
*
10733575 GAATAAAGAGATCCA
1 GAATAAAGAAATCCA
* *
10733590 GGAGAAAGAAA
1 GAATAAAGAAA
10733601 CCCAAGATAC
Statistics
Matches: 43, Mismatches: 9, Indels: 8
0.72 0.15 0.13
Matches are distributed among these distances:
14 3 0.07
15 36 0.84
16 4 0.09
ACGTcount: A:0.56, C:0.13, G:0.21, T:0.10
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:10736604 original size:46 final size:46
Alignment explanation
Indices: 10736537--10736758 Score: 274
Period size: 46 Copynumber: 4.8 Consensus size: 46
10736527 TGTAACCCGC
* * * * *
10736537 CCATAAGCGAACTTGGACTCAACTCAACGAGCTCGGGCGTTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
10736583 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
* *
10736629 CCATAAGTGAACTCAGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCACAT
*
10736679 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
*
10736722 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
10736759 TGCNNNNNNN
Statistics
Matches: 153, Mismatches: 12, Indels: 22
0.82 0.06 0.12
Matches are distributed among these distances:
42 3 0.02
43 7 0.05
44 1 0.01
46 104 0.68
47 27 0.18
49 1 0.01
50 7 0.05
51 3 0.02
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.21
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCACAT
Found at i:10736716 original size:93 final size:93
Alignment explanation
Indices: 10736591--10736761 Score: 333
Period size: 93 Copynumber: 1.8 Consensus size: 93
10736581 ATCCATAAGT
10736591 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
10736656 CGAGCTCGGATGCCTAGTTACATCTCTC
66 CGAGCTCGGATGCCTAGTTACATCTCTC
10736684 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
*
10736749 CGAGTTCGGATGC
66 CGAGCTCGGATGC
10736762 NNNNNNNNNN
Statistics
Matches: 77, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
93 77 1.00
ACGTcount: A:0.31, C:0.29, G:0.18, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCGGACATTCACATCCATAAGTGAACTCAGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCTC
Found at i:10739450 original size:221 final size:221
Alignment explanation
Indices: 10739067--10739491 Score: 742
Period size: 221 Copynumber: 1.9 Consensus size: 221
10739057 GATAGTAAGC
* * * *
10739067 GAATTTAGTCTGTGAACCCCTCGTGTCCGACTCCGGAAACGGTCTCGGGTACGGGGTGTTACAAT
1 GAATTTAGTCAGTGAACCCCTCGTGTCCGACTCCAGAAACGGCCTCAGGTACGGGGTGTTACAAT
10739132 TTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATACGTTTGGGTCTAGCT
66 TTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATACGTTTGGGTCTAGCT
*
10739197 ATACATGCCATTATGTGAATATTTGATAGTGTGGTGATTTCTGACAATTGAAAATGTGTTTATTT
131 ATACATGCCATTATGTGAATAATTGATAGTGTGGTGATTTCTGACAATTGAAAATGTGTTTATTT
*
10739262 ATTGTAATGAATTTCGATCCCGATCA
196 ATAGTAATGAATTTCGATCCCGATCA
*
10739288 GAATTTAGTCAGTGAACCCCTCGTGTCCGACTCCAGCAACGGCCTCAGGTACGGGGTGTTACAAT
1 GAATTTAGTCAGTGAACCCCTCGTGTCCGACTCCAGAAACGGCCTCAGGTACGGGGTGTTACAAT
*
10739353 TTTATTGGTATCAGAGCTACGGTTTAGTCGATTCTAGGACTACCGTAATACGTTTGGGTCTAGCT
66 TTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATACGTTTGGGTCTAGCT
* * **
10739418 ATACATGCCATTATGTGATTAATTGATAGTGTGGTGATTTCTGACATTTGAATTTGTGTTTATTT
131 ATACATGCCATTATGTGAATAATTGATAGTGTGGTGATTTCTGACAATTGAAAATGTGTTTATTT
10739483 ATAGTAATG
196 ATAGTAATG
10739492 GATCCCGATC
Statistics
Matches: 192, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
221 192 1.00
ACGTcount: A:0.24, C:0.17, G:0.23, T:0.36
Consensus pattern (221 bp):
GAATTTAGTCAGTGAACCCCTCGTGTCCGACTCCAGAAACGGCCTCAGGTACGGGGTGTTACAAT
TTTATTGGTATCAGAGCTACGATTTAGTCGATTCTAGGACTACCGTAATACGTTTGGGTCTAGCT
ATACATGCCATTATGTGAATAATTGATAGTGTGGTGATTTCTGACAATTGAAAATGTGTTTATTT
ATAGTAATGAATTTCGATCCCGATCA
Found at i:10744525 original size:70 final size:70
Alignment explanation
Indices: 10744412--10744550 Score: 215
Period size: 70 Copynumber: 2.0 Consensus size: 70
10744402 TGCTTGGTCG
* * * *
10744412 TGTGTCCCCTGCACATAAAATTTGCAAGTCAGTATGCATGGTAGTAAACACACGTGTAGAGACAC
1 TGTGTCCCCTGCACATAAAATTTACAAGTCAGTACGCATGGTAGTAAACACACGGGAAGAGACAC
10744477 GACCA
66 GACCA
* * *
10744482 TGTGTTCCCTGCACATAAAATTTACAAGTCAGTACGTATGGTAGTAAACGCACGGGAAGAGACAC
1 TGTGTCCCCTGCACATAAAATTTACAAGTCAGTACGCATGGTAGTAAACACACGGGAAGAGACAC
10744547 GACC
66 GACC
10744551 GCGTATCTCA
Statistics
Matches: 62, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
70 62 1.00
ACGTcount: A:0.33, C:0.22, G:0.22, T:0.22
Consensus pattern (70 bp):
TGTGTCCCCTGCACATAAAATTTACAAGTCAGTACGCATGGTAGTAAACACACGGGAAGAGACAC
GACCA
Found at i:10744880 original size:21 final size:20
Alignment explanation
Indices: 10744856--10744894 Score: 51
Period size: 21 Copynumber: 1.9 Consensus size: 20
10744846 TTATAATGAC
*
10744856 CACATGGGCATGTTGCCCTTT
1 CACACGGGCATG-TGCCCTTT
*
10744877 CACACGGGCGTGTGCCCT
1 CACACGGGCATGTGCCCT
10744895 ATTTTCAAGA
Statistics
Matches: 16, Mismatches: 2, Indels: 1
0.84 0.11 0.05
Matches are distributed among these distances:
20 6 0.38
21 10 0.62
ACGTcount: A:0.13, C:0.33, G:0.28, T:0.26
Consensus pattern (20 bp):
CACACGGGCATGTGCCCTTT
Found at i:10746989 original size:43 final size:41
Alignment explanation
Indices: 10746940--10747088 Score: 131
Period size: 44 Copynumber: 3.5 Consensus size: 41
10746930 CAATGCCAAC
*
10746940 GTCCCAGACGTGGTCTTACATGTAATCAAACATCGATACCACT
1 GTCCCAGACGTGGTCTTACATGTAATCAAA-ATCGATGCCA-T
* * *
10746983 ATCCCAGACAG-AGTCTTACATGAAATC-AAATACGATGCCGAT
1 GTCCCAGAC-GTGGTCTTACATGTAATCAAAAT-CGATGCC-AT
* * * * *
10747025 GTCCTAGACATGGTCTTACACGTAAAACAGAAGTCGATGCCAAT
1 GTCCCAGACGTGGTCTTACATGT-AATCA-AAATCGATGCC-AT
10747069 GTCCCAGACGTGGTCTTACA
1 GTCCCAGACGTGGTCTTACA
10747089 CAAAACCACA
Statistics
Matches: 84, Mismatches: 15, Indels: 13
0.75 0.13 0.12
Matches are distributed among these distances:
41 2 0.02
42 25 0.30
43 26 0.31
44 28 0.33
45 3 0.04
ACGTcount: A:0.32, C:0.26, G:0.19, T:0.23
Consensus pattern (41 bp):
GTCCCAGACGTGGTCTTACATGTAATCAAAATCGATGCCAT
Found at i:10749658 original size:40 final size:39
Alignment explanation
Indices: 10749540--10749665 Score: 155
Period size: 40 Copynumber: 3.2 Consensus size: 39
10749530 AAACCAAGTA
* *
10749540 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTCGCACAAATG
* * * *
10749579 CCTTCGGGACTTAGCCCGGATATAATCGCTAGCATAAATG
1 CCTTCGGGACTTAGCCCGGATAT-AGCACTCGCACAAATG
*
10749619 CCTTCGGGACATAGCCCGGATATAGCAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGC-ACTCGCACAAATG
10749659 CCTTCGG
1 CCTTCGG
10749666 ATCTTAGTCC
Statistics
Matches: 73, Mismatches: 11, Indels: 5
0.82 0.12 0.06
Matches are distributed among these distances:
39 15 0.21
40 56 0.77
41 2 0.03
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (39 bp):
CCTTCGGGACTTAGCCCGGATATAGCACTCGCACAAATG
Found at i:10750774 original size:66 final size:66
Alignment explanation
Indices: 10750668--10751434 Score: 1534
Period size: 66 Copynumber: 11.6 Consensus size: 66
10750658 ATGATTTTCA
10750668 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10750733 T
66 T
10750734 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10750799 T
66 T
10750800 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10750865 T
66 T
10750866 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10750931 T
66 T
10750932 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10750997 T
66 T
10750998 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10751063 T
66 T
10751064 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10751129 T
66 T
10751130 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10751195 T
66 T
10751196 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10751261 T
66 T
10751262 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10751327 T
66 T
10751328 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10751393 T
66 T
10751394 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATC
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATC
10751435 AACACAACAT
Statistics
Matches: 701, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 701 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (66 bp):
TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
T
Found at i:10755432 original size:19 final size:19
Alignment explanation
Indices: 10755404--10755443 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
10755394 GTCTTACTGG
10755404 ATGCTAAGGTTTCACATAT
1 ATGCTAAGGTTTCACATAT
* *
10755423 ATGCTGAGGTTTCGCATAT
1 ATGCTAAGGTTTCACATAT
10755442 AT
1 AT
10755444 AAGAATGAGT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.28, C:0.15, G:0.20, T:0.38
Consensus pattern (19 bp):
ATGCTAAGGTTTCACATAT
Found at i:10761811 original size:40 final size:40
Alignment explanation
Indices: 10761741--10761905 Score: 235
Period size: 40 Copynumber: 4.2 Consensus size: 40
10761731 AAACCAAGTA
* *
10761741 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* *
10761780 CCTTAGGGACTTAGCCCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
10761820 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
10761860 CCTTCGGGACATAGCCCGAATATAGCAACTCGCACAAAGG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
10761900 CCTTCG
1 CCTTCG
10761906 AATCTTAGTC
Statistics
Matches: 114, Mismatches: 10, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 13 0.11
40 101 0.89
ACGTcount: A:0.27, C:0.28, G:0.22, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:10763014 original size:66 final size:66
Alignment explanation
Indices: 10762908--10763674 Score: 1534
Period size: 66 Copynumber: 11.6 Consensus size: 66
10762898 ATGATTTTCA
10762908 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10762973 T
66 T
10762974 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763039 T
66 T
10763040 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763105 T
66 T
10763106 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763171 T
66 T
10763172 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763237 T
66 T
10763238 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763303 T
66 T
10763304 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763369 T
66 T
10763370 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763435 T
66 T
10763436 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763501 T
66 T
10763502 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763567 T
66 T
10763568 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
10763633 T
66 T
10763634 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATC
1 TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATC
10763675 AACACAACAT
Statistics
Matches: 701, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
66 701 1.00
ACGTcount: A:0.31, C:0.15, G:0.18, T:0.36
Consensus pattern (66 bp):
TAATTTTGACATGGGTTACTAAAATAACTTGATACCTCATCTTTCTCGATGGATGAGGTATCAAG
T
Found at i:10767095 original size:45 final size:45
Alignment explanation
Indices: 10767039--10767171 Score: 221
Period size: 45 Copynumber: 3.0 Consensus size: 45
10767029 AAACTATGTG
* * *
10767039 ATCTGAACTCATTGAGTTGTGGTCTGAGTTCATGATATATGTGCC
1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
*
10767084 ATCTAAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
*
10767129 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATGTATGTG
1 ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTG
10767172 ACACATGTTT
Statistics
Matches: 82, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
45 82 1.00
ACGTcount: A:0.27, C:0.14, G:0.20, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTAAATTATGGTCTGAGTTCATGATATATGTGCC
Found at i:10767116 original size:21 final size:21
Alignment explanation
Indices: 10767092--10767161 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 21
10767082 CCATCTAAAC
10767092 TCATTAAATTATGGTCTGAGT
1 TCATTAAATTATGGTCTGAGT
* * **
10767113 TCATGATA-TATGTGCCATCTGAAC
1 TCATTAAATTATG-G---TCTGAGT
10767137 TCATTAAATTATGGTCTGAGT
1 TCATTAAATTATGGTCTGAGT
10767158 TCAT
1 TCAT
10767162 GATGTATGTG
Statistics
Matches: 36, Mismatches: 8, Indels: 10
0.67 0.15 0.19
Matches are distributed among these distances:
20 4 0.11
21 16 0.44
24 12 0.33
25 4 0.11
ACGTcount: A:0.29, C:0.14, G:0.17, T:0.40
Consensus pattern (21 bp):
TCATTAAATTATGGTCTGAGT
Found at i:10767133 original size:24 final size:24
Alignment explanation
Indices: 10767061--10767134 Score: 66
Period size: 24 Copynumber: 3.2 Consensus size: 24
10767051 TGAGTTGTGG
10767061 TCTGAGTTCATGATATATGTGCCA
1 TCTGAGTTCATGATATATGTGCCA
* ** * *
10767085 TCTAAACTCATTAAATTATG-G---
1 TCTGAGTTCATGATA-TATGTGCCA
10767106 TCTGAGTTCATGATATATGTGCCA
1 TCTGAGTTCATGATATATGTGCCA
10767130 TCTGA
1 TCTGA
10767135 ACTCATTAAA
Statistics
Matches: 35, Mismatches: 10, Indels: 10
0.64 0.18 0.18
Matches are distributed among these distances:
20 4 0.11
21 11 0.31
24 16 0.46
25 4 0.11
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (24 bp):
TCTGAGTTCATGATATATGTGCCA
Found at i:10768822 original size:31 final size:31
Alignment explanation
Indices: 10768784--10768863 Score: 87
Period size: 31 Copynumber: 2.6 Consensus size: 31
10768774 AATTATAGGT
*
10768784 TATTTTATCATATTAT-TTATATTTCATTAT-A
1 TATTTTAT-ATATTATATTATATTACA-TATCA
* *
10768815 TATTTTATATTTTATATTTTATTACATATCA
1 TATTTTATATATTATATTATATTACATATCA
10768846 TATTTTAT-TA-TATATTAT
1 TATTTTATATATTATATTAT
10768864 TTCCTATATT
Statistics
Matches: 42, Mismatches: 5, Indels: 6
0.79 0.09 0.11
Matches are distributed among these distances:
29 7 0.17
30 10 0.24
31 25 0.60
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (31 bp):
TATTTTATATATTATATTATATTACATATCA
Found at i:10768850 original size:17 final size:17
Alignment explanation
Indices: 10768828--10768860 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
10768818 TTTATATTTT
10768828 ATATTTTATTACATATC
1 ATATTTTATTACATATC
*
10768845 ATATTTTATTATATAT
1 ATATTTTATTACATAT
10768861 TATTTCCTAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.36, C:0.06, G:0.00, T:0.58
Consensus pattern (17 bp):
ATATTTTATTACATATC
Found at i:10771252 original size:85 final size:84
Alignment explanation
Indices: 10771110--10771287 Score: 338
Period size: 85 Copynumber: 2.1 Consensus size: 84
10771100 GGCCGGCCAT
10771110 GAGCATGGGTGGACAAGATGTTTGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTATG
1 GAGCATGGGTGGACAAGATGTTTGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTATG
10771175 TAAGGATTAATAAAATAAA
66 TAAGGATTAATAAAATAAA
*
10771194 GAGCATGGGTGGACAAGATGTTATGGCTAAAAACATGTCATCAACATGTTGGGGTAGTGCATTAT
1 GAGCATGGGTGGACAAGATGTT-TGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTAT
10771259 GTAAGGATTAATAAAATAAA
65 GTAAGGATTAATAAAATAAA
10771279 GAGCATGGG
1 GAGCATGGG
10771288 CAATAAAATA
Statistics
Matches: 92, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
84 22 0.24
85 70 0.76
ACGTcount: A:0.37, C:0.09, G:0.28, T:0.26
Consensus pattern (84 bp):
GAGCATGGGTGGACAAGATGTTTGGCTAAAAACATGTCATAAACATGTTGGGGTAGTGCATTATG
TAAGGATTAATAAAATAAA
Found at i:10772576 original size:79 final size:81
Alignment explanation
Indices: 10772454--10772636 Score: 223
Period size: 79 Copynumber: 2.3 Consensus size: 81
10772444 TCGAATGATG
* *
10772454 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAG-TCCCGAAGGCAT
10772517 TTGTGCGAGTTACTA-A
65 TTGTGCGAGTTACTATA
* * * **
10772533 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAGTCCCGAAGGCAT
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCAT
10772596 TTGTGCGAGTTACTATA
65 TTGTGCGAGTTACTATA
* * *
10772613 ACCGAGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
10772637 TGAACGAGTA
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 58 0.65
80 30 0.34
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGTCCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:10772645 original size:40 final size:39
Alignment explanation
Indices: 10772455--10772638 Score: 203
Period size: 40 Copynumber: 4.6 Consensus size: 39
10772445 CGAATGATGT
* * * *
10772455 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AA
* *
10772495 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAA-A
*
10772535 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
10772573 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
10772614 CCGAGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
10772639 AACGAGTAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
39 35 0.28
40 80 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (39 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:10772660 original size:79 final size:79
Alignment explanation
Indices: 10772507--10772661 Score: 199
Period size: 79 Copynumber: 2.0 Consensus size: 79
10772497 GGACTAAGAT
* * **
10772507 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
10772572 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* *
10772586 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGAGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGAGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
10772649 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
10772662 ATTCTGAAGG
Statistics
Matches: 66, Mismatches: 7, Indels: 6
0.84 0.09 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.61
80 24 0.36
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGAGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:10785325 original size:43 final size:43
Alignment explanation
Indices: 10785259--10785345 Score: 147
Period size: 43 Copynumber: 2.0 Consensus size: 43
10785249 GAAACAAATT
* *
10785259 ATGCCCCATGAGAAAGAGGCAATAGAGAATGTAGCCCTAGAGG
1 ATGCCCCACGAGAAAGAGACAATAGAGAATGTAGCCCTAGAGG
*
10785302 ATGCCCCACGAGAAAGAGACAATAGAGAGTGTAGCCCTAGAGG
1 ATGCCCCACGAGAAAGAGACAATAGAGAATGTAGCCCTAGAGG
10785345 A
1 A
10785346 GGGGAAAGAG
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
43 41 1.00
ACGTcount: A:0.38, C:0.20, G:0.30, T:0.13
Consensus pattern (43 bp):
ATGCCCCACGAGAAAGAGACAATAGAGAATGTAGCCCTAGAGG
Found at i:10789863 original size:47 final size:47
Alignment explanation
Indices: 10789812--10789916 Score: 192
Period size: 47 Copynumber: 2.2 Consensus size: 47
10789802 TAGTATTAAT
*
10789812 TATGTGATAAGGCCGAATGGCCAATGTGATGGATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
10789859 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
1 TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
*
10789906 AATGTGATAAG
1 TATGTGATAAG
10789917 TCCCGAAGGG
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 56 1.00
ACGTcount: A:0.34, C:0.08, G:0.30, T:0.28
Consensus pattern (47 bp):
TATGTGATAAGGCCGAATGGCCAATGTGATGAATGTGAAAGTGTATA
Found at i:10795915 original size:27 final size:28
Alignment explanation
Indices: 10795831--10795928 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
10795821 CATGAGATTG
* * * *
10795831 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
10795860 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
10795888 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
10795915 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
10795929 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:10795939 original size:27 final size:27
Alignment explanation
Indices: 10795859--10795941 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
10795849 TAAATTGTAC
* *
10795859 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
10795887 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
10795914 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
10795941 A
1 A
10795942 TTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:10795942 original size:29 final size:27
Alignment explanation
Indices: 10795831--10795942 Score: 98
Period size: 28 Copynumber: 4.0 Consensus size: 27
10795821 CATGAGATTG
** * *
10795831 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGC-GACTT-AATTATATA
* *
10795860 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGA-CTTAATTATATA
* *
10795888 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGACTTAATTATATA
*
10795915 GCACTGAGTGTGCGGACTTAATATATAT
1 GCACTAAGTGTGC-GACTTAAT-TATAT
10795943 TTTTGAATCA
Statistics
Matches: 72, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
27 23 0.32
28 28 0.39
29 21 0.29
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (27 bp):
GCACTAAGTGTGCGACTTAATTATATA
Found at i:10797497 original size:40 final size:40
Alignment explanation
Indices: 10797439--10797650 Score: 171
Period size: 40 Copynumber: 5.1 Consensus size: 40
10797429 TTTACGCTGA
* *
10797439 AGCAGATCCAAGATGATTTGGCATCTCTGTGTTGTCAGAT
1 AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
* *
10797479 AGCAGATCGAAGCA-GATTTGGCATCTTTGTATTGTCAGAG
1 AGCAGATCCAAG-ATGATTTGGCATCTCTGTATTGTCAGAG
* *
10797519 AGCAGATCCAAGATGATTTGGAATCT-TCGTATT-TGACGAGG
1 AGCAGATCCAAGATGATTTGGCATCTCT-GTATTGTCA-GA-G
* * * *
10797560 GGCAAATCCAAGAAGCAGATTTGGCATC-CTTGTATTGTCAGGG
1 AGCAGATCCAAG-A--TGATTTGGCATCTC-TGTATTGTCAGAG
* * *
10797603 AGTAGATCGAAGATAGTAGATTTGGCATCTCTGTATGGTCAGAG
1 AGCAGATCCAAG--A-T-GATTTGGCATCTCTGTATTGTCAGAG
10797647 AGCA
1 AGCA
10797651 AATCAGAGAT
Statistics
Matches: 135, Mismatches: 23, Indels: 24
0.74 0.13 0.13
Matches are distributed among these distances:
39 4 0.03
40 63 0.47
41 12 0.09
42 1 0.01
43 9 0.07
44 42 0.31
45 4 0.03
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (40 bp):
AGCAGATCCAAGATGATTTGGCATCTCTGTATTGTCAGAG
Found at i:10797802 original size:44 final size:44
Alignment explanation
Indices: 10797439--10797798 Score: 241
Period size: 44 Copynumber: 8.6 Consensus size: 44
10797429 TTTACGCTGA
* *
10797439 AGCAGATCCAAGAT----GATTTGGCATCTCTGTGTTGTCAGAT
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
*
10797479 AGCAGAT-C--GA-AGCAGATTTGGCATCTTTGTATTGTCAGAG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* *
10797519 AGCAGATCCAAGAT----GATTTGGAATCT-TCGTATT-TGACGAGG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCT-GTATTGTCA-GA-G
* * *
10797560 GGCAAATCCAAGA-AGCAGATTTGGCATC-CTTGTATTGTCAGGG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTC-TGTATTGTCAGAG
* * * *
10797603 AGTAGATCGAAGATAGTAGATTTGGCATCTCTGTATGGTCAGAG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* * * * * * *
10797647 AGCAAAT-CAGAGATAGTAGACTTGACATATTTGTATTCGACA-AGG
1 AGCAGATCCA-AGATAGCAGATTTGGCATCTCTGTATT-GTCAGA-G
* * *
10797692 AGTAAATCCAAGA-AGCAGATTTGGCA------TATTATCAGAG
1 AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
* *
10797729 AGCAGA-CCGAAGACAGCAGATTTGGCGTCTCTGTATTGTCAGAG
1 AGCAGATCC-AAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
*
10797773 AGCAGATCGAAGATAGCAGATTTGGC
1 AGCAGATCCAAGATAGCAGATTTGGC
10797799 GTCTTTGTGC
Statistics
Matches: 248, Mismatches: 38, Indels: 64
0.71 0.11 0.18
Matches are distributed among these distances:
36 2 0.01
37 13 0.05
38 17 0.07
39 4 0.02
40 55 0.22
41 13 0.05
43 13 0.05
44 111 0.45
45 18 0.07
46 2 0.01
ACGTcount: A:0.31, C:0.16, G:0.27, T:0.27
Consensus pattern (44 bp):
AGCAGATCCAAGATAGCAGATTTGGCATCTCTGTATTGTCAGAG
Found at i:10797813 original size:126 final size:125
Alignment explanation
Indices: 10797489--10797806 Score: 338
Period size: 126 Copynumber: 2.5 Consensus size: 125
10797479 AGCAGATCGA
* * *
10797489 AGCAGATTTGGCATCTTTGTATTGTCAGAGAGCAGATCCAAGAT---GATTTGGAATCTTCGTAT
1 AGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGAT-CAAGATAGAGATTTGGCATCTTTGTAT
* * * * * * *
10797551 TTGACGAGGGGCAAATCCAAGAAGCAGATTTGGCATCCTTGTATTGTCAGGGAGTAGATCGAAGA
65 TCGACAAGGAGCAAATCCAAGAAGCAGATTTGGCA----T-TATTATCAGAGAGCAGACCGAAGA
*
10797616 T
125 C
* * * * * *
10797617 AGTAGATTTGGCATCTCTGTATGGTCAGAGAGCAAATCAGAGATAGTAGACTTGACATATTTGTA
1 AGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCA-AGATAG-AGATTTGGCATCTTTGTA
*
10797682 TTCGACAAGGAGTAAATCCAAGAAGCAGATTTGGCA-TATTATCAGAGAGCAGACCGAAGAC
64 TTCGACAAGGAGCAAATCCAAGAAGCAGATTTGGCATTATTATCAGAGAGCAGACCGAAGAC
* *
10797743 AGCAGATTTGGCGTCTCTGTATTGTCAGAGAGCAGATCGAAGATAGCAGATTTGGCGTCTTTGT
1 AGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATC-AAGATAG-AGATTTGGCATCTTTGT
10797807 GCTCGACGGA
Statistics
Matches: 157, Mismatches: 27, Indels: 14
0.79 0.14 0.07
Matches are distributed among these distances:
126 73 0.46
127 3 0.02
128 37 0.24
132 44 0.28
ACGTcount: A:0.31, C:0.15, G:0.27, T:0.28
Consensus pattern (125 bp):
AGCAGATTTGGCATCTCTGTATTGTCAGAGAGCAGATCAAGATAGAGATTTGGCATCTTTGTATT
CGACAAGGAGCAAATCCAAGAAGCAGATTTGGCATTATTATCAGAGAGCAGACCGAAGAC
Found at i:10801092 original size:12 final size:12
Alignment explanation
Indices: 10801075--10801101 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
10801065 ATTCCGAAGT
10801075 ATATATATATAC
1 ATATATATATAC
10801087 ATATATATATAC
1 ATATATATATAC
10801099 ATA
1 ATA
10801102 AGTATGCCAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.52, C:0.07, G:0.00, T:0.41
Consensus pattern (12 bp):
ATATATATATAC
Found at i:10801615 original size:27 final size:27
Alignment explanation
Indices: 10801584--10801734 Score: 167
Period size: 27 Copynumber: 5.6 Consensus size: 27
10801574 TAAATTTTAC
*
10801584 AGCACTAAGTGTGCGATTTCACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * ** * *
10801611 TGCACTAAGTGTACGAAATGACCATGC
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10801638 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
10801666 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
10801693 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
10801720 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
10801735 GACTCAATAT
Statistics
Matches: 103, Mismatches: 20, Indels: 2
0.82 0.16 0.02
Matches are distributed among these distances:
27 81 0.79
28 22 0.21
ACGTcount: A:0.26, C:0.17, G:0.27, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:10801674 original size:55 final size:55
Alignment explanation
Indices: 10801583--10801731 Score: 167
Period size: 55 Copynumber: 2.7 Consensus size: 55
10801573 TTAAATTTTA
* * *
10801583 CAGCACTAAGTGTGCGA-TTTCACTATGTTGCACTAAGTGTACGAAATGACCATG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGAAATGACCACG
* * ** **
10801637 CGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGAAATGACCACG
* * * *
10801692 TAGCACTAAGTGTGCGAG-TTGATTATATAGCACTGAGTGT
1 CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGT
10801732 GCGGACTCAA
Statistics
Matches: 80, Mismatches: 14, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
54 35 0.44
55 45 0.56
ACGTcount: A:0.27, C:0.17, G:0.26, T:0.30
Consensus pattern (55 bp):
CAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTACGAAATGACCACG
Found at i:10808211 original size:43 final size:43
Alignment explanation
Indices: 10808163--10808257 Score: 106
Period size: 43 Copynumber: 2.2 Consensus size: 43
10808153 TCTCAGATAG
*
10808163 GGTCTTACACAAAATCAT-ATA-ATGATGCCAATGTGCC-AGACAT
1 GGTCTTACACAAAATCATAATACA--ATGCCAATGT-CCTAAACAT
* **
10808206 TGTCTTACACGTAATCATAATACAATGCCAATGTCCTAAACAT
1 GGTCTTACACAAAATCATAATACAATGCCAATGTCCTAAACAT
10808249 GGTCTTACA
1 GGTCTTACA
10808258 TGTAATCACA
Statistics
Matches: 44, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
42 2 0.05
43 38 0.86
44 3 0.07
45 1 0.02
ACGTcount: A:0.36, C:0.22, G:0.14, T:0.28
Consensus pattern (43 bp):
GGTCTTACACAAAATCATAATACAATGCCAATGTCCTAAACAT
Found at i:10814786 original size:22 final size:22
Alignment explanation
Indices: 10814758--10814801 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
10814748 CTGCTGTAAG
10814758 GAATAATAATTAATTATTAAAT
1 GAATAATAATTAATTATTAAAT
10814780 GAATAATAATTAATTATTAAAT
1 GAATAATAATTAATTATTAAAT
10814802 TTACCCTTAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.55, C:0.00, G:0.05, T:0.41
Consensus pattern (22 bp):
GAATAATAATTAATTATTAAAT
Found at i:10819024 original size:28 final size:28
Alignment explanation
Indices: 10818961--10819394 Score: 807
Period size: 28 Copynumber: 15.5 Consensus size: 28
10818951 ATATTAAGTC
*
10818961 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
10818988 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819016 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819044 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819072 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819100 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819128 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819156 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819184 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819212 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819240 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819268 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819296 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
10819324 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
10819352 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
10819381 CGCACACTTAGTGC
1 CGCACACTTAGTGC
10819395 CAATCTCATG
Statistics
Matches: 400, Mismatches: 5, Indels: 2
0.98 0.01 0.00
Matches are distributed among these distances:
27 22 0.05
28 359 0.90
29 19 0.05
ACGTcount: A:0.35, C:0.26, G:0.11, T:0.28
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:10819860 original size:14 final size:14
Alignment explanation
Indices: 10819841--10819868 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
10819831 TGGGCATACT
10819841 TATGTATATATATA
1 TATGTATATATATA
10819855 TATGTATATATATA
1 TATGTATATATATA
10819869 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (14 bp):
TATGTATATATATA
Found at i:10825715 original size:43 final size:44
Alignment explanation
Indices: 10825604--10825715 Score: 117
Period size: 43 Copynumber: 2.6 Consensus size: 44
10825594 AATGCCAACG
* *
10825604 TCCCAGACGTGGTCTTACATGT-AATCAAATATCGATGACACTG
1 TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGACACTA
* * * *
10825647 TCCCAGATA-GAGTCTCACACG-AAATCAAATA-CGATGTCGA-TA
1 TCCCAGACATG-GTCTTACATGTAAATCAAATATCGATGAC-ACTA
10825689 TCCCAGACATGGTCTTACATGTAAATC
1 TCCCAGACATGGTCTTACATGTAAATC
10825716 TCAAATCGAT
Statistics
Matches: 55, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.26
Consensus pattern (44 bp):
TCCCAGACATGGTCTTACATGTAAATCAAATATCGATGACACTA
Found at i:10833060 original size:49 final size:49
Alignment explanation
Indices: 10832993--10833230 Score: 305
Period size: 49 Copynumber: 4.8 Consensus size: 49
10832983 TAGCCAAAGC
* * * * *
10832993 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
*
10833042 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
* *
10833091 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAAC
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-AAT
* * * * *
10833141 CATCTGATACACATAGTAGCCTGCACTTAGTACTACACACGTGATTACAGT
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA--CCAAT
* * *
10833192 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACA
10833231 TGCGACCTCA
Statistics
Matches: 167, Mismatches: 19, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
49 89 0.53
50 42 0.25
51 35 0.21
52 1 0.01
ACGTcount: A:0.29, C:0.27, G:0.18, T:0.26
Consensus pattern (49 bp):
TATCCGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCAAT
Found at i:10833238 original size:101 final size:99
Alignment explanation
Indices: 10832993--10833238 Score: 332
Period size: 101 Copynumber: 2.5 Consensus size: 99
10832983 TAGCCAAAGC
* * ** * *
10832993 TATCTGGTACGCATAGTAGCCTGCACATAGTACTACACATGCGACC-AATTATCCGGTACACGTA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
*
10833057 GTAGCCTGCACTTAGTACTACACACGTGACCAAT
66 GTAGCCTGCACTTAGTACTACACACGTGAACAAT
* * * * *
10833091 TATCCGGTACACGTAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATCTGATACACATA
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
*
10833156 GTAGCCTGCACTTAGTACTACACACGTGATTACAGT
66 GTAGCCTGCACTTAGTACTACACACGTGA--ACAAT
* *
10833192 TTTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
1 TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCT
10833239 CACAATAGAT
Statistics
Matches: 126, Mismatches: 19, Indels: 3
0.85 0.13 0.02
Matches are distributed among these distances:
98 40 0.32
99 42 0.33
101 44 0.35
ACGTcount: A:0.28, C:0.28, G:0.18, T:0.26
Consensus pattern (99 bp):
TATCCGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTAACCATCCGATACACATA
GTAGCCTGCACTTAGTACTACACACGTGAACAAT
Found at i:10843896 original size:30 final size:30
Alignment explanation
Indices: 10843862--10843918 Score: 96
Period size: 30 Copynumber: 1.9 Consensus size: 30
10843852 ATCAATTTTC
**
10843862 AAGTCTAGGGGTAAAATGGTCATTTTGTAA
1 AAGTCTAGGGACAAAATGGTCATTTTGTAA
10843892 AAGTCTAGGGACAAAATGGTCATTTTG
1 AAGTCTAGGGACAAAATGGTCATTTTG
10843919 CCAAAAATGT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.33, C:0.09, G:0.26, T:0.32
Consensus pattern (30 bp):
AAGTCTAGGGACAAAATGGTCATTTTGTAA
Found at i:10844514 original size:97 final size:97
Alignment explanation
Indices: 10844393--10844570 Score: 245
Period size: 97 Copynumber: 1.8 Consensus size: 97
10844383 CGTGTTGTAT
*
10844393 GTCAGTGTAAGACCTGTCTGGGACATGG-ATTGACATCGATAGATGAGAGCCAGTGTAAGACC-T
1 GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGAT-G-TGAGAGCCAGTGTAAGACCAT
*
10844456 GTCTGGGACACGGCATCGGCCTCGATATATGAAA
64 GCCTGGGACACGGCATCGGCCTCGATATATGAAA
* * **
10844490 GTCAGTGTAAGACCTGTCCT-GGACATGGCATCGACTTTGATGTGCTAGCCAGTGTAAGACCATG
1 GTCAGTGTAAGACCTGT-CTGGGACATGGCATCGACATCGATGTGAGAGCCAGTGTAAGACCATG
*
10844554 CCTGGGACATGGCATCG
65 CCTGGGACACGGCATCG
10844571 ACATCTTATC
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
96 17 0.24
97 43 0.61
98 11 0.15
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (97 bp):
GTCAGTGTAAGACCTGTCTGGGACATGGCATCGACATCGATGTGAGAGCCAGTGTAAGACCATGC
CTGGGACACGGCATCGGCCTCGATATATGAAA
Found at i:10851469 original size:28 final size:28
Alignment explanation
Indices: 10851429--10851484 Score: 103
Period size: 28 Copynumber: 2.0 Consensus size: 28
10851419 GAGCCATAAA
10851429 ATTTTATTCATATTTCAAAGAGTTCATT
1 ATTTTATTCATATTTCAAAGAGTTCATT
*
10851457 ATTTTATTCATATTTCAAAGCGTTCATT
1 ATTTTATTCATATTTCAAAGAGTTCATT
10851485 CTCTTACACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.30, C:0.12, G:0.07, T:0.50
Consensus pattern (28 bp):
ATTTTATTCATATTTCAAAGAGTTCATT
Found at i:10851496 original size:28 final size:28
Alignment explanation
Indices: 10851437--10851496 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
10851427 AAATTTTATT
* **
10851437 CATATTTCAAAGAGTTCATTATTTTATT
1 CATATTTCAAAGAGTTCATTATCTTACA
* *
10851465 CATATTTCAAAGCGTTCATTCTCTTACA
1 CATATTTCAAAGAGTTCATTATCTTACA
10851493 CATA
1 CATA
10851497 GTCCCTTATT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.07, T:0.43
Consensus pattern (28 bp):
CATATTTCAAAGAGTTCATTATCTTACA
Found at i:10863153 original size:48 final size:48
Alignment explanation
Indices: 10863082--10863260 Score: 268
Period size: 48 Copynumber: 3.7 Consensus size: 48
10863072 ATGCCAATGT
*
10863082 CATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATGTTGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGC
* **
10863130 CATGTCCCAGACATGGTCTTACACTAGCTCACATAACAATGCCGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGC
*
10863178 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGTTGATGC
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGC
* * * * *
10863226 CATGTTCCAAACATGGTCTTATACGGGATCACATA
1 CATGTCCCAGACATGGTCTTACACTGGCTCACATA
10863261 CTGTTTCCAT
Statistics
Matches: 118, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
48 118 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.26
Consensus pattern (48 bp):
CATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGC
Found at i:10863194 original size:96 final size:96
Alignment explanation
Indices: 10863072--10863246 Score: 296
Period size: 96 Copynumber: 1.8 Consensus size: 96
10863062 ACGATGCCTC
* *
10863072 ATGCCAATGTCATGTCCCAGACATGGTCTTACACTGGCTCACGTAACAATGTTGATGCCATGTCC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGCCATGTCC
*
10863137 CAGACATGGTCTTACACTAGCTCACATAACA
66 CAAACATGGTCTTACACTAGCTCACATAACA
* * *
10863168 ATGCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACGATGTTGATGCCATGTTC
1 ATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGCCATGTCC
10863233 CAAACATGGTCTTA
66 CAAACATGGTCTTA
10863247 TACGGGATCA
Statistics
Matches: 73, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
96 73 1.00
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (96 bp):
ATGCCAATGCCATGTCCCAGACATGGTCTTACACTGGCTCACATAACAATGTTGATGCCATGTCC
CAAACATGGTCTTACACTAGCTCACATAACA
Found at i:10866479 original size:75 final size:75
Alignment explanation
Indices: 10866354--10866493 Score: 201
Period size: 75 Copynumber: 1.9 Consensus size: 75
10866344 ATCTGACAGT
* * *
10866354 GCTGGGTGCAATCTTTGTCGATTTATTCGACTAGTGCTAGGCACATCATTATATTTATCAGTTTA
1 GCTGGGTGCAACCCTTGTCGATTTATTCGACTAGTGCTAGGCACACCATTATATTTATCAGTTTA
10866419 TTGGACTAGC
66 TTGGACTAGC
* * * *
10866429 GCTGGGTGCAACCCTTGTC-AGTTTATTTGACTAGTGCTGGGCACACCATTATATTTGTCGGTTT
1 GCTGGGTGCAACCCTTGTCGA-TTTATTCGACTAGTGCTAGGCACACCATTATATTTATCAGTTT
10866493 A
65 A
10866494 CCGAGCTAGT
Statistics
Matches: 57, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
74 1 0.02
75 56 0.98
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.38
Consensus pattern (75 bp):
GCTGGGTGCAACCCTTGTCGATTTATTCGACTAGTGCTAGGCACACCATTATATTTATCAGTTTA
TTGGACTAGC
Found at i:10866487 original size:40 final size:40
Alignment explanation
Indices: 10866367--10866511 Score: 101
Period size: 40 Copynumber: 3.8 Consensus size: 40
10866357 GGGTGCAATC
* *
10866367 TTTGTC-GATTTATTCGACTAGTGCTAGGCACATCATTATA
1 TTTGTCAG-TTTATTCGACTAGTGCTGGGCACACCATTATA
* * *
10866407 TTTATCAGTTTATTGGACTAGCGCTGGGTGCA-ACC------
1 TTTGTCAGTTTATTCGACTAGTGCT-GG-GCACACCATTATA
* *
10866442 CTTGTCAGTTTATTTGACTAGTGCTGGGCACACCATTATA
1 TTTGTCAGTTTATTCGACTAGTGCTGGGCACACCATTATA
* * *
10866482 TTTGTCGGTTTA-CCGAGCTAGTGCTAGGCA
1 TTTGTCAGTTTATTCGA-CTAGTGCTGGGCA
10866512 TAACTTTCAT
Statistics
Matches: 80, Mismatches: 14, Indels: 22
0.69 0.12 0.19
Matches are distributed among these distances:
33 3 0.04
34 5 0.06
35 21 0.26
39 2 0.03
40 42 0.52
41 4 0.05
42 3 0.04
ACGTcount: A:0.21, C:0.19, G:0.23, T:0.37
Consensus pattern (40 bp):
TTTGTCAGTTTATTCGACTAGTGCTGGGCACACCATTATA
Found at i:10879769 original size:17 final size:18
Alignment explanation
Indices: 10879737--10879786 Score: 59
Period size: 17 Copynumber: 2.8 Consensus size: 18
10879727 TTCCACTTTG
*
10879737 TTCTTTTTTAATTTAT-AT
1 TTCTTATTT-ATTTATGAT
10879755 TTCTTATTTATTTATGAT
1 TTCTTATTTATTTATGAT
*
10879773 TT-TTATTTTTTTAT
1 TTCTTATTTATTTAT
10879787 TCTCAAATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
17 17 0.59
18 12 0.41
ACGTcount: A:0.20, C:0.04, G:0.02, T:0.74
Consensus pattern (18 bp):
TTCTTATTTATTTATGAT
Found at i:10879818 original size:22 final size:23
Alignment explanation
Indices: 10879793--10879848 Score: 71
Period size: 22 Copynumber: 2.5 Consensus size: 23
10879783 TTATTCTCAA
**
10879793 ATTTCTTCTTTTATTA-TTTTTT
1 ATTTCTTCTTTTACAATTTTTTT
*
10879815 ATTTCTT-TATTACAATTTTTTT
1 ATTTCTTCTTTTACAATTTTTTT
10879837 ATTTCTTCTTTT
1 ATTTCTTCTTTT
10879849 CAGATCATAT
Statistics
Matches: 28, Mismatches: 4, Indels: 3
0.80 0.11 0.09
Matches are distributed among these distances:
21 5 0.18
22 20 0.71
23 3 0.11
ACGTcount: A:0.16, C:0.11, G:0.00, T:0.73
Consensus pattern (23 bp):
ATTTCTTCTTTTACAATTTTTTT
Found at i:10883130 original size:84 final size:84
Alignment explanation
Indices: 10882985--10883151 Score: 289
Period size: 84 Copynumber: 2.0 Consensus size: 84
10882975 CTTCTGTATG
* *
10882985 TGCAATTGTATTTAGGGATTGGCAATGGAGTAGGACAGGGATAAATATTATTAAATCCATTATTG
1 TGCAATTGTATTTAGGGATTGGCAATGGAGTAGGACAGGGACAAATATTATTAAATCCATTATCG
10883050 TTCTACGGTTGGCACGTCC
66 TTCTACGGTTGGCACGTCC
* * *
10883069 TGCAATTGTTTTTAGGGATTGGCAATGGAGTAGGACAGGGACAAATATTGTTAAATTCATTATCG
1 TGCAATTGTATTTAGGGATTGGCAATGGAGTAGGACAGGGACAAATATTATTAAATCCATTATCG
10883134 TTCTACGGTTGGCACGTC
66 TTCTACGGTTGGCACGTC
10883152 TTGCCTTACG
Statistics
Matches: 78, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
84 78 1.00
ACGTcount: A:0.28, C:0.13, G:0.26, T:0.34
Consensus pattern (84 bp):
TGCAATTGTATTTAGGGATTGGCAATGGAGTAGGACAGGGACAAATATTATTAAATCCATTATCG
TTCTACGGTTGGCACGTCC
Found at i:10883714 original size:17 final size:17
Alignment explanation
Indices: 10883676--10883728 Score: 58
Period size: 17 Copynumber: 3.2 Consensus size: 17
10883666 GCCTAGGAAA
*
10883676 ATTTTA-TTTTA-TTTC
1 ATTTTATTTTTATTTTT
10883691 A-TTTATTTTTATTTTT
1 ATTTTATTTTTATTTTT
10883707 ATTTTATTTTTGATTTTAT
1 ATTTTATTTTT-ATTTT-T
10883726 ATT
1 ATT
10883729 AAATTAGTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
14 4 0.12
15 6 0.19
16 4 0.12
17 9 0.28
18 5 0.16
19 4 0.12
ACGTcount: A:0.21, C:0.02, G:0.02, T:0.75
Consensus pattern (17 bp):
ATTTTATTTTTATTTTT
Found at i:10884726 original size:38 final size:38
Alignment explanation
Indices: 10884675--10884750 Score: 134
Period size: 38 Copynumber: 2.0 Consensus size: 38
10884665 AATTTTGCAG
*
10884675 GTAAGATTGGAGTCATGGGCACAACTATTGCTACGACC
1 GTAAGATTGGAGTCATGGGCACAACTATTACTACGACC
*
10884713 GTAAGATTGGAGTCATGGGCACGACTATTACTACGACC
1 GTAAGATTGGAGTCATGGGCACAACTATTACTACGACC
10884751 TTCGGCACGA
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
38 36 1.00
ACGTcount: A:0.29, C:0.21, G:0.26, T:0.24
Consensus pattern (38 bp):
GTAAGATTGGAGTCATGGGCACAACTATTACTACGACC
Found at i:10888477 original size:2 final size:2
Alignment explanation
Indices: 10888472--10888613 Score: 284
Period size: 2 Copynumber: 71.0 Consensus size: 2
10888462 TCTTTGGTCA
10888472 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
10888514 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
10888556 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC TC
10888598 TC TC TC TC TC TC TC TC
1 TC TC TC TC TC TC TC TC
10888614 CAAAGCTTCA
Statistics
Matches: 140, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 140 1.00
ACGTcount: A:0.00, C:0.50, G:0.00, T:0.50
Consensus pattern (2 bp):
TC
Found at i:10893272 original size:22 final size:22
Alignment explanation
Indices: 10893244--10893288 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
10893234 TTAATAAAAA
10893244 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
10893266 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
10893288 A
1 A
10893289 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:10897867 original size:22 final size:22
Alignment explanation
Indices: 10897839--10897888 Score: 73
Period size: 22 Copynumber: 2.2 Consensus size: 22
10897829 TTAATAAAAA
10897839 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
10897861 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
10897883 ACAAAT
1 A-AAAT
10897889 TAAGATAATG
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 21 0.84
23 4 0.16
ACGTcount: A:0.50, C:0.16, G:0.02, T:0.32
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:10913885 original size:46 final size:46
Alignment explanation
Indices: 10913827--10913949 Score: 212
Period size: 46 Copynumber: 2.7 Consensus size: 46
10913817 TGATATGTGT
*
10913827 GCTAGTGCAAGACATGTCTAGGACATGCATCGGCATTAAGATGAGA
1 GCTAGTGTAAGACATGTCTAGGACATGCATCGGCATTAAGATGAGA
*
10913873 GCTAGTGTAAGACATGTCT-GGAAGATGCATCGGCATTAAGATGAGA
1 GCTAGTGTAAGACATGTCTAGG-ACATGCATCGGCATTAAGATGAGA
10913919 GCTAGTGTAAGACATGTCTAGGACATGCATC
1 GCTAGTGTAAGACATGTCTAGGACATGCATC
10913950 AACCTCGAGA
Statistics
Matches: 72, Mismatches: 3, Indels: 4
0.91 0.04 0.05
Matches are distributed among these distances:
45 2 0.03
46 68 0.94
47 2 0.03
ACGTcount: A:0.32, C:0.16, G:0.28, T:0.24
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTAGGACATGCATCGGCATTAAGATGAGA
Found at i:10914092 original size:49 final size:49
Alignment explanation
Indices: 10914015--10914133 Score: 141
Period size: 49 Copynumber: 2.4 Consensus size: 49
10914005 CTATGTGTCT
* * * *
10914015 GTGTAAGACCTGTCTAGGACATGGCATCGACAC-CAATAGATGAGAGCCA
1 GTGTAAGACCTGTCTGGGACACGACATCGAC-CTCAATAGATGAAAGCCA
* * * *
10914064 GTGTAAGACCTATCTGGGACACGACATCGACCTCGATATATGAAAGTCA
1 GTGTAAGACCTGTCTGGGACACGACATCGACCTCAATAGATGAAAGCCA
*
10914113 GTGTAAGACTTGTCTGGGACA
1 GTGTAAGACCTGTCTGGGACA
10914134 TGGCATTGAC
Statistics
Matches: 59, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
48 1 0.02
49 58 0.98
ACGTcount: A:0.31, C:0.21, G:0.26, T:0.22
Consensus pattern (49 bp):
GTGTAAGACCTGTCTGGGACACGACATCGACCTCAATAGATGAAAGCCA
Found at i:10915510 original size:46 final size:46
Alignment explanation
Indices: 10915460--10915634 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
10915450 TGGTTGAGCA
10915460 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
10915506 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
10915552 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
10915598 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10915635 GCGGGTTACA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:10923134 original size:46 final size:46
Alignment explanation
Indices: 10923084--10923258 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
10923074 TGGTTGAGCA
10923084 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
10923130 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
10923176 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
10923222 CCCGAGCTCGTTGAGTTGAGTCCGAGTTCGCTTATGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
10923259 GCGGGTTACA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.20, C:0.21, G:0.29, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:10925075 original size:42 final size:43
Alignment explanation
Indices: 10924980--10925079 Score: 139
Period size: 43 Copynumber: 2.3 Consensus size: 43
10924970 CGGGTAGAGA
* ** * *
10924980 CACGGCCGTGTGTTTCAATTGTGTGGAGAGCACGGTCTCTGGC
1 CACGGGCGTGTGCCTCAATTGTGTGGAGAGAACGGCCTCTGGC
*
10925023 CACGGGCGTGTGCCTCAATTGTGTGGAGA-AATGGCCTCTGGC
1 CACGGGCGTGTGCCTCAATTGTGTGGAGAGAACGGCCTCTGGC
10925065 CACGGGCGTGTGCCT
1 CACGGGCGTGTGCCT
10925080 TAACTTGTTG
Statistics
Matches: 51, Mismatches: 6, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
42 25 0.49
43 26 0.51
ACGTcount: A:0.14, C:0.25, G:0.36, T:0.25
Consensus pattern (43 bp):
CACGGGCGTGTGCCTCAATTGTGTGGAGAGAACGGCCTCTGGC
Found at i:10929997 original size:19 final size:19
Alignment explanation
Indices: 10929970--10930006 Score: 65
Period size: 19 Copynumber: 1.9 Consensus size: 19
10929960 GTCAGCATAG
10929970 ATTCATAGGCATAACTTAA
1 ATTCATAGGCATAACTTAA
*
10929989 ATTCGTAGGCATAACTTA
1 ATTCATAGGCATAACTTA
10930007 CACATTTTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.38, C:0.16, G:0.14, T:0.32
Consensus pattern (19 bp):
ATTCATAGGCATAACTTAA
Found at i:10934620 original size:34 final size:34
Alignment explanation
Indices: 10934577--10934645 Score: 120
Period size: 34 Copynumber: 2.0 Consensus size: 34
10934567 TGTACATCCA
*
10934577 ATAACACCATTTATGGTCTAATTACCATATAAGG
1 ATAACACCATTTATGGTCTAATTACCACATAAGG
*
10934611 ATAACACCATTTATTGTCTAATTACCACATAAGG
1 ATAACACCATTTATGGTCTAATTACCACATAAGG
10934645 A
1 A
10934646 CTCATACTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 33 1.00
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (34 bp):
ATAACACCATTTATGGTCTAATTACCACATAAGG
Found at i:10935543 original size:16 final size:16
Alignment explanation
Indices: 10935522--10935558 Score: 65
Period size: 16 Copynumber: 2.3 Consensus size: 16
10935512 TACTGGGCCG
10935522 GTGTCGTGACACCCTA
1 GTGTCGTGACACCCTA
10935538 GTGTCGTGACACCCTA
1 GTGTCGTGACACCCTA
*
10935554 ATGTC
1 GTGTC
10935559 TATGTCGCAA
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 20 1.00
ACGTcount: A:0.19, C:0.30, G:0.24, T:0.27
Consensus pattern (16 bp):
GTGTCGTGACACCCTA
Found at i:10937151 original size:57 final size:58
Alignment explanation
Indices: 10937042--10937159 Score: 184
Period size: 57 Copynumber: 2.1 Consensus size: 58
10937032 GGTATATTTG
* * * *
10937042 ATTACTCAATACCTATTTAAAGTATAATATATAGACCTTAATAGTCTAAAAATTTAAA
1 ATTACTCAATACCTATTTAAAGCATAATATATAGAACTCAATAGTCTAAAAATTAAAA
*
10937100 ATTACTCAATACCTATTTAAAGCA-AATATATAGAACTCAGTAGTCTAAAAATTAAAA
1 ATTACTCAATACCTATTTAAAGCATAATATATAGAACTCAATAGTCTAAAAATTAAAA
10937157 ATT
1 ATT
10937160 GAAAATCAAT
Statistics
Matches: 55, Mismatches: 5, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
57 32 0.58
58 23 0.42
ACGTcount: A:0.47, C:0.13, G:0.06, T:0.34
Consensus pattern (58 bp):
ATTACTCAATACCTATTTAAAGCATAATATATAGAACTCAATAGTCTAAAAATTAAAA
Found at i:10944346 original size:49 final size:47
Alignment explanation
Indices: 10944206--10944723 Score: 874
Period size: 47 Copynumber: 10.9 Consensus size: 47
10944196 ACATAGTTGT
10944206 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
10944253 TCGGCTATTAGGCCTTATCACATATATACATTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
*
10944300 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACG
1 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
10944349 TCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
10944396 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
* *
10944443 TCGGCTATTAGGCCTTATCACATATATACATTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
10944490 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
10944539 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
* * *
10944588 TTGGCCATTCGGCCTTATTACATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
10944635 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACA
1 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACA
*
10944684 TCGACCATTAGGCCTTATCACATATATACACTTTCACATT
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
10944724 TATTCAAATA
Statistics
Matches: 446, Mismatches: 19, Indels: 12
0.94 0.04 0.03
Matches are distributed among these distances:
47 264 0.59
49 182 0.41
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (47 bp):
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACA
Found at i:10944368 original size:96 final size:94
Alignment explanation
Indices: 10944206--10944723 Score: 883
Period size: 96 Copynumber: 5.4 Consensus size: 94
10944196 ACATAGTTGT
10944206 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
*
10944271 CACATATATACATTTTCACATTCATCACA
66 CACATATATACACTTTCACATTCATCACA
*
10944300 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACGTCGGCTATTAGGCCTT
1 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
10944365 ATCACATATATACACTTTCACATTCATCACA
64 ATCACATATATACACTTTCACATTCATCACA
10944396 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
*
10944461 CACATATATACATTTTCACATTCATCACA
66 CACATATATACACTTTCACATTCATCACA
*
10944490 TCGGCCATTAGGCCTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTT
1 TCGGCCATTAGGCCTTATCAC--ATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTT
10944555 ATCACATATATATACACTTTCACATTCATCACA
64 ATCAC--ATATATACACTTTCACATTCATCACA
* * * *
10944588 TTGGCCATTCGGCCTTATTACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTAT
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
10944653 CACATATATATACACTTTCACATTCATCACA
66 CAC--ATATATACACTTTCACATTCATCACA
*
10944684 TCGACCATTAGGCCTTATCACATATATACACTTTCACATT
1 TCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
10944724 TATTCAAATA
Statistics
Matches: 405, Mismatches: 13, Indels: 10
0.95 0.03 0.02
Matches are distributed among these distances:
94 113 0.28
96 249 0.61
98 43 0.11
ACGTcount: A:0.30, C:0.28, G:0.08, T:0.34
Consensus pattern (94 bp):
TCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGCCTTAT
CACATATATACACTTTCACATTCATCACA
Found at i:10947335 original size:21 final size:23
Alignment explanation
Indices: 10947300--10947344 Score: 76
Period size: 21 Copynumber: 2.0 Consensus size: 23
10947290 ATCAAAGATT
10947300 CCCTTTAGTGGTATTGTGATATC
1 CCCTTTAGTGGTATTGTGATATC
10947323 CCCTTT-G-GGTATTGTGATATC
1 CCCTTTAGTGGTATTGTGATATC
10947344 C
1 C
10947345 ACCTGCCAAG
Statistics
Matches: 22, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
21 15 0.68
22 1 0.05
23 6 0.27
ACGTcount: A:0.16, C:0.20, G:0.22, T:0.42
Consensus pattern (23 bp):
CCCTTTAGTGGTATTGTGATATC
Found at i:10950123 original size:23 final size:23
Alignment explanation
Indices: 10950094--10950219 Score: 118
Period size: 23 Copynumber: 5.5 Consensus size: 23
10950084 ACAGCTCGTT
* *
10950094 GAGCTTACCGTTTCAGTT-TTTAT
1 GAGCTTACCGTTTCA-TTCCTTAG
* * *
10950117 GAGCTTACC-ATTCAGAT-CTTCG
1 GAGCTTACCGTTTCA-TTCCTTAG
10950139 GAGCTTACCGTTTCATTCCTTAG
1 GAGCTTACCGTTTCATTCCTTAG
*
10950162 GGGCTTACCGTTTCATTCCTTAG
1 GAGCTTACCGTTTCATTCCTTAG
*
10950185 GGGCTTACCGTTTCA-T-CTCTACG
1 GAGCTTACCGTTTCATTCCT-TA-G
10950208 GAGCTTACCGTT
1 GAGCTTACCGTT
10950220 CAGCTCAATT
Statistics
Matches: 89, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
21 2 0.02
22 21 0.24
23 66 0.74
ACGTcount: A:0.17, C:0.25, G:0.20, T:0.38
Consensus pattern (23 bp):
GAGCTTACCGTTTCATTCCTTAG
Found at i:10953331 original size:14 final size:14
Alignment explanation
Indices: 10953314--10953343 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
10953304 GGATAATTAA
10953314 ATTAGTGAAATTTT
1 ATTAGTGAAATTTT
10953328 ATTAGTGAAATTTT
1 ATTAGTGAAATTTT
10953342 AT
1 AT
10953344 CATTTTAGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.37, C:0.00, G:0.13, T:0.50
Consensus pattern (14 bp):
ATTAGTGAAATTTT
Found at i:10953694 original size:48 final size:48
Alignment explanation
Indices: 10953618--10953887 Score: 287
Period size: 48 Copynumber: 5.6 Consensus size: 48
10953608 TATGTGTGCC
*
10953618 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATAGGAGAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* * * *
10953666 AGTGCAAGACCATGTCTGGGACATGGCATCGG-CATTGATATGTGCGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCT
* * * *
10953714 AGTGTAAGACCATGTTTGAGACATGGCATCGGCCAC-ATTATAAGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGA-TATGAGAGCT
* * ** * *
10953762 AATGTAAGACCATGTCTAGGACATGGCAT-GG-CATTAAGATGAAAGCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCA-CGATATGAGAGCT
* * * * *
10953809 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCC
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
* *
10953857 AGTGTAAGACCATGTTTGGAACATGGCATCG
1 AGTGTAAGACCATGTCTGGGACATGGCATCG
10953888 ACAATTCACC
Statistics
Matches: 183, Mismatches: 32, Indels: 14
0.80 0.14 0.06
Matches are distributed among these distances:
46 2 0.01
47 38 0.21
48 140 0.77
49 3 0.02
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (48 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATATGAGAGCT
Found at i:10953856 original size:95 final size:96
Alignment explanation
Indices: 10953618--10953887 Score: 346
Period size: 95 Copynumber: 2.8 Consensus size: 96
10953608 TATGTGTGCC
* * * *
10953618 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATAGGAGAGCTAGTGCAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
* * * ***
10953683 GGGACATGGCATCGGCATTGATATGTGCGCT
66 AGGACATGGCATCGGCATTAAGATGAAAGCT
* * * * *
10953714 AGTGTAAGACCATGTTTGAGACATGGCATCGGCCACATTATAAGAGCCAATGTAAGACCATGTCT
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
10953779 AGGACATGGCAT-GGCATTAAGATGAAAGCT
66 AGGACATGGCATCGGCATTAAGATGAAAGCT
* * *
10953809 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTGAGCCAGTGTAAGACCATGT-T
1 AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
*
10953873 TGGAACATGGCATCG
66 AGG-ACATGGCATCG
10953888 ACAATTCACC
Statistics
Matches: 148, Mismatches: 24, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
94 3 0.02
95 77 0.52
96 68 0.46
ACGTcount: A:0.29, C:0.20, G:0.29, T:0.23
Consensus pattern (96 bp):
AGTGTAAGACCATGTCTGGGACATGGCATCGGCCACAATATGAGAGCCAGTGTAAGACCATGTCT
AGGACATGGCATCGGCATTAAGATGAAAGCT
Found at i:10953881 original size:143 final size:143
Alignment explanation
Indices: 10953615--10953887 Score: 381
Period size: 143 Copynumber: 1.9 Consensus size: 143
10953605 TGATATGTGT
* * * *
10953615 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCACGATAGGAGAGCTAGTGCAAGACCATG
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCAAGATA-GAAAGCTAGTGCAAGACCATG
** * * *
10953680 TCTGGGACATGGCATCGGCATTGATATGTGCGCTAGTGTAAGACCATGTTTGAGACATGGCATCG
65 TCTGGGACATGGCATCGGCATCAACATGTGAGCCAGTGTAAGACCATGTTTGAGACATGGCATCG
10953745 GCCACATTATAAGA
130 GCCACATTATAAGA
* *
10953759 GCCAATGTAAGACCATGTCTAGGACATGGCAT-GGCATTAAGAT-GAAAGCTAGTGTAAGACCAT
1 GCCAATGTAAGACCATGTCTAGGACATGGCATCGGC--CAAGATAGAAAGCTAGTGCAAGACCAT
*
10953822 GTCTGGGACATGGCATCGGCCTCAACATGTGAGCCAGTGTAAGACCATGTTTG-GAACATGGCAT
64 GTCTGGGACATGGCATCGGCATCAACATGTGAGCCAGTGTAAGACCATGTTTGAG-ACATGGCAT
10953886 CG
128 CG
10953888 ACAATTCACC
Statistics
Matches: 114, Mismatches: 12, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
142 1 0.01
143 79 0.69
144 30 0.26
145 4 0.04
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.22
Consensus pattern (143 bp):
GCCAATGTAAGACCATGTCTAGGACATGGCATCGGCCAAGATAGAAAGCTAGTGCAAGACCATGT
CTGGGACATGGCATCGGCATCAACATGTGAGCCAGTGTAAGACCATGTTTGAGACATGGCATCGG
CCACATTATAAGA
Found at i:10959569 original size:46 final size:45
Alignment explanation
Indices: 10959516--10959767 Score: 244
Period size: 46 Copynumber: 5.5 Consensus size: 45
10959506 TGTGTGCCAC
10959516 TGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGATAGCTAG
* * * * **
10959562 TGTAAGACCATGTCT-GGACATGGCATC-GACATTGAGACGAGGGCTAG
1 TGTAAGA-CATGTCTGGGACAT-GCATCGGCCA--CATATGATAGCTAG
* * *
10959609 TGTAAGACATGTCTGGGACATGCATCAGCCATAATATGAGAGCTAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCA-CATATGATAGCTAG
* * * *
10959655 TGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGTTAGCCAG
1 TGTAAGACATGTCTGGGACATGCATCGGCCAC-ATATGATAGCTAG
* * *
10959701 TGTCAA-ACATGTCTGGGACATGCGTCGGCTACGAGATG-T-GCTAG
1 TGT-AAGACATGTCTGGGACATGCATCGGCCAC-ATATGATAGCTAG
10959745 TGTAAGACATGTCTGGGACATGC
1 TGTAAGACATGTCTGGGACATGC
10959768 GTTAGCACGG
Statistics
Matches: 175, Mismatches: 22, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
43 2 0.01
44 24 0.14
45 1 0.01
46 109 0.62
47 38 0.22
48 1 0.01
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.24
Consensus pattern (45 bp):
TGTAAGACATGTCTGGGACATGCATCGGCCACATATGATAGCTAG
Found at i:10959631 original size:93 final size:92
Alignment explanation
Indices: 10959511--10959766 Score: 297
Period size: 93 Copynumber: 2.8 Consensus size: 92
10959501 AGATTTGTGT
*
10959511 GCCACTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCTAGTGTAAGACCATGTC
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACA-TATGATAGCTAGTGTAAGA-CATGTC
* *
10959576 T-GGACATGGCATCGACATTGAGACGAGG
64 TGGGACATGGCATCGACATCGAGACGAGA
* * * *
10959604 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCATAATATGAGAGCTAGTGTAAGACATGTCT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCA-CATATGATAGCTAGTGTAAGACATGTCT
* * * **
10959669 GGGACAT-GCATCGGCCTCGAGATGTTA
65 GGGACATGGCATCGACATCGAGACGAGA
* * *
10959696 GCCAGTGTCAA-ACATGTCTGGGACATGCGTCGGCTACGAGATG-T-GCTAGTGTAAGACATGTC
1 GCCAGTGT-AAGACATGTCTGGGACATGCATCGGCCAC-ATATGATAGCTAGTGTAAGACATGTC
10959758 TGGGACATG
64 TGGGACATG
10959767 CGTTAGCACG
Statistics
Matches: 139, Mismatches: 19, Indels: 12
0.82 0.11 0.07
Matches are distributed among these distances:
90 26 0.19
92 53 0.38
93 59 0.42
94 1 0.01
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (92 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCCACATATGATAGCTAGTGTAAGACATGTCTG
GGACATGGCATCGACATCGAGACGAGA
Found at i:10966962 original size:29 final size:29
Alignment explanation
Indices: 10966925--10967008 Score: 107
Period size: 29 Copynumber: 2.9 Consensus size: 29
10966915 AATTATATTC
*
10966925 ATATGGGCCCATTAGGCCCAAATCACCCGT
1 ATAT-GGCCCATTAGGCCCAAATCACACGT
* **
10966955 ATATGGCCCATTAGGCCCAAATTACATTT
1 ATATGGCCCATTAGGCCCAAATCACACGT
*
10966984 ATATGGCCCGTTAGGCCC-AATCACA
1 ATATGGCCCATTAGGCCCAAATCACA
10967009 TTCATATTCA
Statistics
Matches: 48, Mismatches: 6, Indels: 2
0.86 0.11 0.04
Matches are distributed among these distances:
28 6 0.12
29 38 0.79
30 4 0.08
ACGTcount: A:0.29, C:0.30, G:0.18, T:0.24
Consensus pattern (29 bp):
ATATGGCCCATTAGGCCCAAATCACACGT
Found at i:10966965 original size:58 final size:57
Alignment explanation
Indices: 10966895--10967007 Score: 147
Period size: 58 Copynumber: 2.0 Consensus size: 57
10966885 TCACATACTT
* * *
10966895 GTATCTGGCCCATTAAGCTC-AATTATATTCATATGGGCCCATTAGGCCCAAATCACCC
1 GTATATGGCCCATTAAGCCCAAATTACATTCATAT-GGCCCATTAGGCCC-AATCACCC
* * *
10966953 GTATATGGCCCATTAGGCCCAAATTACATTTATATGGCCCGTTAGGCCCAATCAC
1 GTATATGGCCCATTAAGCCCAAATTACATTCATATGGCCCATTAGGCCCAATCAC
10967008 ATTCATATTC
Statistics
Matches: 48, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
57 6 0.12
58 30 0.62
59 12 0.25
ACGTcount: A:0.27, C:0.28, G:0.17, T:0.27
Consensus pattern (57 bp):
GTATATGGCCCATTAAGCCCAAATTACATTCATATGGCCCATTAGGCCCAATCACCC
Found at i:10970242 original size:13 final size:13
Alignment explanation
Indices: 10970220--10970252 Score: 50
Period size: 13 Copynumber: 2.6 Consensus size: 13
10970210 AAGGATTTGT
10970220 TTAT-TAAACTAA
1 TTATCTAAACTAA
10970232 TTATCTAAACTAA
1 TTATCTAAACTAA
*
10970245 TTAACTAA
1 TTATCTAA
10970253 TTTAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
12 4 0.21
13 15 0.79
ACGTcount: A:0.48, C:0.12, G:0.00, T:0.39
Consensus pattern (13 bp):
TTATCTAAACTAA
Found at i:10975908 original size:40 final size:39
Alignment explanation
Indices: 10975852--10975931 Score: 124
Period size: 40 Copynumber: 2.0 Consensus size: 39
10975842 GACACTCTTT
*
10975852 CGAGCTGTAGTGTGTCCGCAACATATGCAGGACCACAAC
1 CGAGCTGTAGTGTGTCCACAACATATGCAGGACCACAAC
* *
10975891 CNGAGCTGTGGTGTGTCCACAACATATGCAGGATCACAAC
1 C-GAGCTGTAGTGTGTCCACAACATATGCAGGACCACAAC
10975931 C
1 C
10975932 AATTCAGGAA
Statistics
Matches: 37, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 1 0.03
40 36 0.97
ACGTcount: A:0.28, C:0.28, G:0.25, T:0.19
Consensus pattern (39 bp):
CGAGCTGTAGTGTGTCCACAACATATGCAGGACCACAAC
Found at i:10979299 original size:24 final size:25
Alignment explanation
Indices: 10979270--10979317 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
10979260 TTTACATTTT
*
10979270 TAAAAT-TTATATTTTATAATAAAC
1 TAAAATGTGATATTTTATAATAAAC
10979294 TAAAATGTGATATTTTATAATAAA
1 TAAAATGTGATATTTTATAATAAA
10979318 AACGCATCTC
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 6 0.27
25 16 0.73
ACGTcount: A:0.50, C:0.02, G:0.04, T:0.44
Consensus pattern (25 bp):
TAAAATGTGATATTTTATAATAAAC
Found at i:10982091 original size:42 final size:45
Alignment explanation
Indices: 10982045--10982239 Score: 143
Period size: 49 Copynumber: 4.2 Consensus size: 45
10982035 CATAGTTCAA
10982045 CTATGGTCTTACACAT-C-T-TCACATAAT-GATGCCATAACCCAG
1 CTATGGTCTTACACATACATATCACAT-ATCGATGCCATAACCCAG
*
10982087 CTATGGTCTTACACGTAATCACATATCACATATCGATGCCATAGCCCAG
1 CTATGGTCTTACAC---AT-ACATATCACATATCGATGCCATAACCCAG
* * * *
10982136 CTATGGTCTTACACAAATCACATGTCTCA-CT-GATGCCATATCCCAG
1 CTATGGTCTTACAC--AT-ACATATCACATATCGATGCCATAACCCAG
* * * * *
10982182 ATATGGTCTTATACAGTAGCATAT-ATCACACCGATGCCATATCCCAG
1 CTATGGTCTTACACA-TA-CATATCA-CATATCGATGCCATAACCCAG
*
10982229 ATATGGTCTTA
1 CTATGGTCTTA
10982240 TACGGGAATC
Statistics
Matches: 128, Mismatches: 12, Indels: 21
0.80 0.07 0.13
Matches are distributed among these distances:
42 14 0.11
44 2 0.02
45 9 0.07
46 26 0.20
47 28 0.22
48 15 0.12
49 34 0.27
ACGTcount: A:0.30, C:0.27, G:0.14, T:0.29
Consensus pattern (45 bp):
CTATGGTCTTACACATACATATCACATATCGATGCCATAACCCAG
Found at i:10982242 original size:47 final size:47
Alignment explanation
Indices: 10982072--10982239 Score: 187
Period size: 47 Copynumber: 3.6 Consensus size: 47
10982062 TTCACATAAT
* * *
10982072 GATGCCATAACCCAGCTATGGTCTTACAC-GTAATCACATATCACATATC
1 GATGCCATATCCCAGATATGGTCTTACACAGT-ATCACATATCAC--ACC
* * * * * *
10982121 GATGCCATAGCCCAGCTATGGTCTTACACA-AATCACATGTCTCACT
1 GATGCCATATCCCAGATATGGTCTTACACAGTATCACATATCACACC
* * *
10982167 GATGCCATATCCCAGATATGGTCTTATACAGTAGCATATATCACACC
1 GATGCCATATCCCAGATATGGTCTTACACAGTATCACATATCACACC
10982214 GATGCCATATCCCAGATATGGTCTTA
1 GATGCCATATCCCAGATATGGTCTTA
10982240 TACGGGAATC
Statistics
Matches: 102, Mismatches: 15, Indels: 6
0.83 0.12 0.05
Matches are distributed among these distances:
46 28 0.27
47 36 0.35
48 10 0.10
49 28 0.27
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (47 bp):
GATGCCATATCCCAGATATGGTCTTACACAGTATCACATATCACACC
Found at i:10982296 original size:31 final size:31
Alignment explanation
Indices: 10982261--10982409 Score: 226
Period size: 31 Copynumber: 4.8 Consensus size: 31
10982251 CTTGTCACTT
* *
10982261 GTAGCCGAAGCTACCACTATTCACTGAACAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* * *
10982292 GTAGCTGGAGCTACCATTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
* *
10982323 GTAGCCGGAGCTACCACTTTTCACTGGTCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
*
10982354 GTAGCAGAAGCTACCACTTTTCACTGATCAG
1 GTAGCCGAAGCTACCACTTTTCACTGATCAG
10982385 GTAGCCGAAGCTACCACTTTTCACT
1 GTAGCCGAAGCTACCACTTTTCACT
10982410 TGGCATTTGT
Statistics
Matches: 106, Mismatches: 12, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 106 1.00
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (31 bp):
GTAGCCGAAGCTACCACTTTTCACTGATCAG
Found at i:10982494 original size:50 final size:51
Alignment explanation
Indices: 10982385--10982512 Score: 186
Period size: 50 Copynumber: 2.5 Consensus size: 51
10982375 CACTGATCAG
* * *
10982385 GTAGCCGAAGCTACCACTTTTCACTTGGCATTTGTCCTTGATCAAATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGGCACTTGTCCTTGATCAAATAAGT
* * *
10982436 GTAGCCGAAGCTATCACTTATCACTT-TCACTTGTCTTTGATCAGATAAGT
1 GTAGCCGAAGCTATCACTTATCACTTGGCACTTGTCCTTGATCAAATAAGT
*
10982486 GTATCCGAAGCTATCACTTATCACTTG
1 GTAGCCGAAGCTATCACTTATCACTTG
10982513 TTGCCATGGT
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
50 45 0.65
51 24 0.35
ACGTcount: A:0.26, C:0.23, G:0.16, T:0.34
Consensus pattern (51 bp):
GTAGCCGAAGCTATCACTTATCACTTGGCACTTGTCCTTGATCAAATAAGT
Found at i:10987993 original size:24 final size:24
Alignment explanation
Indices: 10987932--10988028 Score: 106
Period size: 24 Copynumber: 4.1 Consensus size: 24
10987922 TTCACTATAA
* *
10987932 GGGTTCGCATGTATCTGGTGATAG
1 GGGTTCGCATGTGTCTAGTGATAG
**
10987956 GGGTTCATATGTGTCTAGTGATAG
1 GGGTTCGCATGTGTCTAGTGATAG
* *
10987980 AGGTTCGCAAGTGTCTAGT-ATAG
1 GGGTTCGCATGTGTCTAGTGATAG
* * *
10988003 GGGTTTGCAGGTGTCTGGTGATAG
1 GGGTTCGCATGTGTCTAGTGATAG
10988027 GG
1 GG
10988029 ATTGTAACAC
Statistics
Matches: 60, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
23 19 0.32
24 41 0.68
ACGTcount: A:0.19, C:0.10, G:0.38, T:0.33
Consensus pattern (24 bp):
GGGTTCGCATGTGTCTAGTGATAG
Found at i:10992440 original size:47 final size:46
Alignment explanation
Indices: 10992284--10992440 Score: 144
Period size: 47 Copynumber: 3.4 Consensus size: 46
10992274 TTTGAGAGCC
* * * *
10992284 AGTGTAAGACATGTCTGGGACATGCAT-GAGCCTCAACA-AAAATAGCT
1 AGTGTAAGACATGTCTGGGACACGCATCG-G-CT-AATAGTAGATAGCT
*
10992331 AGTGTAAGACATGTCTGGGACACGCATCGGCTAATAGTTG-T-GCT
1 AGTGTAAGACATGTCTGGGACACGCATCGGCTAATAGTAGATAGCT
* *
10992375 AGTGTAAGACATGTCTGGGATATGCATCGGCCTTAATAG-AGATAGCT
1 AGTGTAAGACATGTCTGGGACACGCATCGG-C-TAATAGTAGATAGCT
* * *
10992422 AGTGTGAGACGTGCCTGGG
1 AGTGTAAGACATGTCTGGG
10992441 TTGTGCTAGT
Statistics
Matches: 93, Mismatches: 11, Indels: 12
0.80 0.09 0.10
Matches are distributed among these distances:
44 31 0.33
45 6 0.06
46 9 0.10
47 46 0.49
48 1 0.01
ACGTcount: A:0.29, C:0.17, G:0.29, T:0.25
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACACGCATCGGCTAATAGTAGATAGCT
Found at i:11000858 original size:80 final size:80
Alignment explanation
Indices: 11000666--11000886 Score: 272
Period size: 79 Copynumber: 2.8 Consensus size: 80
11000656 AATGATGTCT
* * * * *
11000666 GGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGA-CCGAAGGCATTTGT
1 GGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGT
* *
11000729 GCGAGATACTAATTTC
65 GCGAGATACTAAATCC
*
11000745 GGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
*
11000809 CGAGTTACTAAATCC
66 CGAGATACTAAATCC
* * *
11000824 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCGGGCTATG-TCCCGAAGGCATTTG
1 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGACTAAGAT-CCGAAGGCATTTG
11000887 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 9
0.85 0.09 0.06
Matches are distributed among these distances:
78 27 0.22
79 49 0.40
80 46 0.37
81 2 0.02
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (80 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGACTAAGATCCGAAGGCATTTGTG
CGAGATACTAAATCC
Found at i:11000893 original size:80 final size:79
Alignment explanation
Indices: 11000702--11000919 Score: 257
Period size: 80 Copynumber: 2.8 Consensus size: 79
11000692 AAGTGACCAT
* * *
11000702 ATCCGGACTAAGA-CCGAAGGCATTTGTGCGAGATACTAATTTCGGGCTAAG-CCCGAAGGCATT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCATT
11000765 TGTACGAGTTACTAA
65 TGTACGAGTTACTAA
11000780 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATT
1 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAG-TACTAAATCCGGGTTAAGTCCCGAAGGCATT
*
11000845 TGTGCGAGTTACTATA
65 TGTACGAGTTACTA-A
* * ** * * *
11000861 A-CCGGGCTATG-TCCCGAAGGCATTTGAACGAGTAGCTATATCC-GGTTAAATTCCGAAGG
1 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTA-CTAAATCCGGGTTAAGTCCCGAAGG
11000920 TACGTGATTT
Statistics
Matches: 123, Mismatches: 12, Indels: 9
0.85 0.08 0.06
Matches are distributed among these distances:
78 13 0.11
79 51 0.41
80 57 0.46
81 2 0.02
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
GTACGAGTTACTAA
Found at i:11000900 original size:40 final size:40
Alignment explanation
Indices: 11000666--11000893 Score: 232
Period size: 40 Copynumber: 5.8 Consensus size: 40
11000656 AATGATGTCT
* * * * * *
11000666 GGGCTAAGTTCCGAAGGC-TTTGTGCTAAGTGACCATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTAC-GAGTTACTAAATCC
* * * * * *
11000706 GGACTAAG-ACCGAAGGCATTTGTGCGAGATACTAATTTC
1 GGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCC
11000745 GGGCTAAG-CCCGAAGGCATTTGTACGAGTTACTAAATCC
1 GGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCC
* *
11000784 GGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCC
1 GGGCTAAG-TCCCGAAGGCATTTGTACGAGTTACTAAATCC
* *
11000824 GGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CC
1 GGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTA-AATCC
* *
11000864 GGGCTATGTCCCGAAGGCATTTGAACGAGT
1 GGGCTAAGTCCCGAAGGCATTTGTACGAGT
11000894 AGCTATATCC
Statistics
Matches: 160, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
39 56 0.35
40 102 0.64
41 2 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTACGAGTTACTAAATCC
Found at i:11001755 original size:40 final size:40
Alignment explanation
Indices: 11001701--11001783 Score: 141
Period size: 40 Copynumber: 2.1 Consensus size: 40
11001691 AAAATCACTA
*
11001701 AAAATATCAGGAATGGAATTAAATCGTGAATAAATTATGT
1 AAAATATCAGGAATGGAATTAAATAGTGAATAAATTATGT
11001741 AAAATAGT-AGGAATGGAATTAAATAGTGAATAAATTATGT
1 AAAATA-TCAGGAATGGAATTAAATAGTGAATAAATTATGT
11001781 AAA
1 AAA
11001784 CGAACCTTGA
Statistics
Matches: 41, Mismatches: 1, Indels: 2
0.93 0.02 0.05
Matches are distributed among these distances:
40 40 0.98
41 1 0.02
ACGTcount: A:0.51, C:0.02, G:0.18, T:0.29
Consensus pattern (40 bp):
AAAATATCAGGAATGGAATTAAATAGTGAATAAATTATGT
Found at i:11003142 original size:47 final size:47
Alignment explanation
Indices: 11003068--11003224 Score: 180
Period size: 47 Copynumber: 3.4 Consensus size: 47
11003058 TTTGAGAGCC
11003068 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGATAGGT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGATAGGT
* * * * *
11003115 AGTGTAAGACGTGTCTGGGACACGCATC-GACT--A-AGAG-TTGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGATAG-G-T
* * *
11003159 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCAACACAGATAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGATAGGT
*
11003206 AGTGTAAGACGTGTCTGGG
1 AGTGTAAGACATGTCTGGG
11003225 TTGTGCTATT
Statistics
Matches: 89, Mismatches: 14, Indels: 14
0.76 0.12 0.12
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 27 0.30
45 3 0.03
46 3 0.03
47 45 0.51
48 3 0.03
49 2 0.02
ACGTcount: A:0.29, C:0.19, G:0.29, T:0.23
Consensus pattern (47 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCAACAAAGATAGGT
Found at i:11006894 original size:47 final size:47
Alignment explanation
Indices: 11006821--11006953 Score: 221
Period size: 47 Copynumber: 2.8 Consensus size: 47
11006811 NNNNNNNNAT
11006821 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACAC
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACAC
* * * * *
11006868 ATACACTTTCACATTCATCACGTCGGCTATTAGGCCTTATCATATAT
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACAC
11006915 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
1 ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTA
11006954 CTATCATTTC
Statistics
Matches: 79, Mismatches: 7, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 79 1.00
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
ATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACACAC
Done.