Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 39 of 297
Found at i:13855206 original size:24 final size:24
Alignment explanation
Indices: 13855179--13855235 Score: 68
Period size: 22 Copynumber: 2.5 Consensus size: 24
13855169 CAATAGTGAA
13855179 AATAATAAGTATAATAATAAATAT
1 AATAATAAGTATAATAATAAATAT
* *
13855203 AATAAT-A-TATAATACTATATAT
1 AATAATAAGTATAATAATAAATAT
13855225 -ATAA-AAGTATA
1 AATAATAAGTATA
13855236 TATATACACA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 5 0.17
22 17 0.59
23 1 0.03
24 6 0.21
ACGTcount: A:0.60, C:0.02, G:0.04, T:0.35
Consensus pattern (24 bp):
AATAATAAGTATAATAATAAATAT
Found at i:13855226 original size:14 final size:14
Alignment explanation
Indices: 13855207--13855241 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
13855197 AAATATAATA
*
13855207 ATATATAATACTAT
1 ATATATAAAACTAT
*
13855221 ATATATAAAAGTAT
1 ATATATAAAACTAT
13855235 ATATATA
1 ATATATA
13855242 CACATATGAT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.54, C:0.03, G:0.03, T:0.40
Consensus pattern (14 bp):
ATATATAAAACTAT
Found at i:13855235 original size:22 final size:23
Alignment explanation
Indices: 13855179--13855260 Score: 64
Period size: 22 Copynumber: 3.6 Consensus size: 23
13855169 CAATAGTGAA
13855179 AATAATAAGTATAATAATAAATAT
1 AATAA-AAGTATAATAATAAATAT
* * *
13855203 AATAATA-TATAATACTATATAT
1 AATAAAAGTATAATAATAAATAT
13855225 -ATAAAAGTAT-ATATATACACATAT
1 AATAAAAGTATAATA-ATA-A-ATAT
*
13855249 GATAAAA-TATAA
1 AATAAAAGTATAA
13855261 AAGGGGTAAA
Statistics
Matches: 46, Mismatches: 6, Indels: 11
0.73 0.10 0.17
Matches are distributed among these distances:
21 8 0.17
22 18 0.39
23 1 0.02
24 12 0.26
25 7 0.15
ACGTcount: A:0.59, C:0.04, G:0.04, T:0.34
Consensus pattern (23 bp):
AATAAAAGTATAATAATAAATAT
Found at i:13855236 original size:24 final size:23
Alignment explanation
Indices: 13855199--13855259 Score: 70
Period size: 24 Copynumber: 2.5 Consensus size: 23
13855189 ATAATAATAA
*
13855199 ATATAATAATATATA-ATACTATAT
1 ATATAA-AATATATATATAC-ACAT
13855223 ATATAAAAGTATATATATACACAT
1 ATATAAAA-TATATATATACACAT
13855247 ATGATAAAATATA
1 AT-ATAAAATATA
13855260 AAAGGGGTAA
Statistics
Matches: 33, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
23 2 0.06
24 21 0.64
25 10 0.30
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (23 bp):
ATATAAAATATATATATACACAT
Found at i:13855449 original size:28 final size:28
Alignment explanation
Indices: 13855413--13855511 Score: 82
Period size: 27 Copynumber: 3.5 Consensus size: 28
13855403 GATATATGGT
* * *
13855413 AATAGTATATACATAATATAGTTATTAAAA
1 AATA-TATATACATAAGATA-ATATGAAAA
*
13855443 AA-ATATATACGTAAGATAATATGAAAA
1 AATATATATACATAAGATAATATGAAAA
13855470 AATATATAT--ATAA-ATAATAT-AATATTA
1 AATATATATACATAAGATAATATGAA-A--A
13855497 AATATATATACATAA
1 AATATATATACATAA
13855512 CATATGTAAA
Statistics
Matches: 58, Mismatches: 5, Indels: 13
0.76 0.07 0.17
Matches are distributed among these distances:
24 2 0.03
25 8 0.14
26 3 0.05
27 19 0.33
28 19 0.33
29 5 0.09
30 2 0.03
ACGTcount: A:0.58, C:0.03, G:0.05, T:0.34
Consensus pattern (28 bp):
AATATATATACATAAGATAATATGAAAA
Found at i:13855486 original size:25 final size:25
Alignment explanation
Indices: 13855440--13855506 Score: 73
Period size: 26 Copynumber: 2.6 Consensus size: 25
13855430 ATAGTTATTA
**
13855440 AAAAAATATATACGTAAGATAATAT
1 AAAAAATATATATATAAGATAATAT
13855465 GAAAAAATATATATATAA-ATAATAT
1 -AAAAAATATATATATAAGATAATAT
13855490 AATATTAAATATATATA
1 AA-A--AAATATATATA
13855507 CATAACATAT
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
24 2 0.06
25 8 0.22
26 15 0.42
27 11 0.31
ACGTcount: A:0.61, C:0.01, G:0.04, T:0.33
Consensus pattern (25 bp):
AAAAAATATATATATAAGATAATAT
Found at i:13859483 original size:16 final size:17
Alignment explanation
Indices: 13859451--13859483 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
13859441 TGATATTGAT
13859451 ATTTTTTTTATTGCAAA
1 ATTTTTTTTATTGCAAA
13859468 ATTTTTTTTATT-CAAA
1 ATTTTTTTTATTGCAAA
13859484 TGCGCTAAAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 4 0.25
17 12 0.75
ACGTcount: A:0.30, C:0.06, G:0.03, T:0.61
Consensus pattern (17 bp):
ATTTTTTTTATTGCAAA
Found at i:13864696 original size:49 final size:48
Alignment explanation
Indices: 13864488--13864761 Score: 163
Period size: 48 Copynumber: 5.8 Consensus size: 48
13864478 TTATTTGTGT
*
13864488 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGG-CTACGA--GATGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGATCGATGA
* * * * * * * * *
13864532 GTTAGTGTAAGGCCATGCCTGGGACATAGCATCAG-CACGTATAGAGGT
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCG-ATCGATGA
* * * * * * *
13864580 G-TCAGTATAAGACCATATCTGGGACATAGCAGCGGCATGGATATG-TGAGA
1 GCT-AGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAT-CGAT--GA
* * *
13864630 GCTAGTGCAAGATCATGTCTGGGACATGGCATCGGCCTCGATTCCG-TTA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-T-CGATGA
* * ** * *
13864679 GTTAGTGTAAGACCATGTCTAGGACATGGCATC-TACTTGATGGATGA
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATGA
*
13864726 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC
1 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGC
13864762 ATTATACCCT
Statistics
Matches: 173, Mismatches: 43, Indels: 24
0.72 0.18 0.10
Matches are distributed among these distances:
44 10 0.06
45 15 0.09
46 9 0.05
47 34 0.20
48 37 0.21
49 32 0.18
50 32 0.18
51 4 0.02
ACGTcount: A:0.26, C:0.19, G:0.30, T:0.24
Consensus pattern (48 bp):
GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGATCGATGA
Found at i:13868195 original size:27 final size:27
Alignment explanation
Indices: 13868161--13868227 Score: 107
Period size: 27 Copynumber: 2.5 Consensus size: 27
13868151 TTGTCACATT
13868161 TCACTTTGCCATATTTGGCACACTTTA
1 TCACTTTGCCATATTTGGCACACTTTA
* * *
13868188 TCAGTTTGACATGTTTGGCACACTTTA
1 TCACTTTGCCATATTTGGCACACTTTA
13868215 TCACTTTGCCATA
1 TCACTTTGCCATA
13868228 GTTCAACTAT
Statistics
Matches: 34, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 34 1.00
ACGTcount: A:0.22, C:0.24, G:0.13, T:0.40
Consensus pattern (27 bp):
TCACTTTGCCATATTTGGCACACTTTA
Found at i:13875329 original size:27 final size:27
Alignment explanation
Indices: 13875296--13875362 Score: 116
Period size: 27 Copynumber: 2.5 Consensus size: 27
13875286 TTGTCACACT
*
13875296 TCACTTTGCCATATTTGGCACACTTTA
1 TCACTTTGTCATATTTGGCACACTTTA
*
13875323 TCACTTTGTCATGTTTGGCACACTTTA
1 TCACTTTGTCATATTTGGCACACTTTA
13875350 TCACTTTGTCATA
1 TCACTTTGTCATA
13875363 GTTCAACTAT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.21, C:0.24, G:0.12, T:0.43
Consensus pattern (27 bp):
TCACTTTGTCATATTTGGCACACTTTA
Found at i:13879599 original size:27 final size:27
Alignment explanation
Indices: 13879568--13879745 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
13879558 TAAATTGTAC
13879568 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
13879595 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
13879621 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
13879649 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
13879677 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
13879704 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
13879731 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
13879746 GGCTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:13879682 original size:82 final size:81
Alignment explanation
Indices: 13879569--13879724 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
13879559 AAATTGTACA
* *
13879569 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
13879633 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
13879650 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
13879715 TGCGAGTTGA
65 TGCGAATTGA
13879725 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:13879736 original size:82 final size:81
Alignment explanation
Indices: 13879565--13879745 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
13879555 GATTAAATTG
* *
13879565 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
13879630 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
13879646 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
13879710 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
13879728 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
13879746 GGCTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:13879756 original size:27 final size:27
Alignment explanation
Indices: 13879650--13879756 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
13879640 TGACCATGCG
* * * *
13879650 GCACTAAGTGTGCGAGTTTGACTATGTA
1 GCACTAAGTGTGCGAG-CTCAATATATA
** * * **
13879678 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
13879705 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
13879732 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
13879757 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.31
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:13885601 original size:48 final size:48
Alignment explanation
Indices: 13885507--13885778 Score: 212
Period size: 48 Copynumber: 5.8 Consensus size: 48
13885497 TTATTTGTGT
* * *
13885507 GCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGACCACACT--ATGAGA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCG-GCATA-TAGATGAGA
13885553 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCAT-TGAGATGAGA
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATAT-AGATGAGA
* * *
13885601 GCTAGTGTAAGA-CATTTCTGGGACAT-GCATCGGC-TACGAGATGTGT
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATA-TAGATGAGA
* * *
13885647 G--AGTGTAAGACTATGTCTGGGACATGGCATCGGCATATATA-GAG-
1 GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATATAGATGAGA
* * * * *
13885691 GTGTCAGTGTAAGACCATGTCTGGGACATAGCAACGACACGTATATG-TGAGA
1 G-CT-AGTGTAAGACCATTTCTGGGACATGGCATCGGCA--TATA-GATGAGA
* *
13885743 GCTAGTGTAAGACCATGTT-TGGAACATGGCGTCGGC
1 GCTAGTGTAAGACCAT-TTCTGGGACATGGCATCGGC
13885779 CTCGATTCCA
Statistics
Matches: 183, Mismatches: 23, Indels: 36
0.76 0.10 0.15
Matches are distributed among these distances:
44 10 0.05
45 16 0.09
46 37 0.20
47 31 0.17
48 54 0.30
50 29 0.16
51 5 0.03
52 1 0.01
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (48 bp):
GCTAGTGTAAGACCATTTCTGGGACATGGCATCGGCATATAGATGAGA
Found at i:13885682 original size:92 final size:93
Alignment explanation
Indices: 13885507--13885778 Score: 259
Period size: 94 Copynumber: 2.9 Consensus size: 93
13885497 TTATTTGTGT
* *
13885507 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACACTATGAGAGCTAGTGTAAGACCATTTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACACGATGAGAGC-AGTGTAAGACCATGTC
13885572 TGGGACATGGCATCGGCATTGAGATGAGA
65 TGGGACATGGCATCGGCATTGAGATGAGA
* * * * * *
13885601 GCTAGTGTAAGACATTTCTGGGACATGCATCGGCTACGA-GATGTGTG-AGTGTAAGACTATGTC
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGACCAC-ACGATGAGAGCAGTGTAAGACCATGTC
*
13885664 TGGGACATGGCATCGGCA-T-ATAT-AGA
65 TGGGACATGGCATCGGCATTGAGATGAGA
* * * *
13885690 GGTGTCAGTGTAAGACCATGTCTGGGACATAGCAACGACACGTATATG-TGAGAGCTAGTGTAAG
1 -G-CT-AGTGTAAGA-CATGTCTGGGACAT-GCATCGAC-C--ACACGATGAGAGC-AGTGTAAG
* * *
13885754 ACCATGTTTGGAACATGGCGTCGGC
57 ACCATGTCTGGGACATGGCATCGGC
13885779 CTCGATTCCA
Statistics
Matches: 145, Mismatches: 21, Indels: 20
0.78 0.11 0.11
Matches are distributed among these distances:
89 3 0.02
90 4 0.03
91 2 0.01
92 41 0.28
93 13 0.09
94 45 0.31
95 1 0.01
96 5 0.03
97 2 0.01
98 29 0.20
ACGTcount: A:0.28, C:0.18, G:0.30, T:0.25
Consensus pattern (93 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGACCACACGATGAGAGCAGTGTAAGACCATGTCT
GGGACATGGCATCGGCATTGAGATGAGA
Found at i:13886890 original size:28 final size:28
Alignment explanation
Indices: 13886845--13886914 Score: 104
Period size: 28 Copynumber: 2.5 Consensus size: 28
13886835 CAAAGTTTTT
* * *
13886845 AGACACGGGTGTGCCATGGCCGTGTGAG
1 AGACACGGGCGTGTCATGGCCGTGTAAG
*
13886873 AGACATGGGCGTGTCATGGCCGTGTAAG
1 AGACACGGGCGTGTCATGGCCGTGTAAG
13886901 AGACACGGGCGTGT
1 AGACACGGGCGTGT
13886915 GTTAGATCGT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
28 37 1.00
ACGTcount: A:0.20, C:0.20, G:0.41, T:0.19
Consensus pattern (28 bp):
AGACACGGGCGTGTCATGGCCGTGTAAG
Found at i:13889121 original size:13 final size:13
Alignment explanation
Indices: 13889103--13889127 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
13889093 AGTAATCGCG
13889103 CACGGGCGTGTCA
1 CACGGGCGTGTCA
13889116 CACGGGCGTGTC
1 CACGGGCGTGTC
13889128 CTTGCTGAGC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.32, G:0.40, T:0.16
Consensus pattern (13 bp):
CACGGGCGTGTCA
Found at i:13891336 original size:136 final size:136
Alignment explanation
Indices: 13891092--13891367 Score: 462
Period size: 136 Copynumber: 2.0 Consensus size: 136
13891082 GAATAATTAT
* * * * *
13891092 CAGTGGCAAGTTATAAGGACAACACCAACGAAAATAGTCGGCGTTTTTAACGTTGATTCAGTCAC
1 CAGTGGCAAGTTATAAGGACAACACCAACGAAAACAATCGACATTTTTAACGTCGATTCAGTCAC
*
13891157 CATGCTCTCTAATCAGGTAGAACTTTTGAACAGAAAGATTGACAGTTTTCTTGGTTCTTCACAGG
66 CATGCTCTCTAATCAGGTAGAACTTTTGAACAGAAAGATTGACAGTTTTCTTGGTTATTCACAGG
13891222 TTCACC
131 TTCACC
* * *
13891228 CAGTGGTAAGTTATGAGGACAACACCAATGAAAACAATCGACATTTTTAACGTCGATTCAGTCAC
1 CAGTGGCAAGTTATAAGGACAACACCAACGAAAACAATCGACATTTTTAACGTCGATTCAGTCAC
*
13891293 CATGCTCTCTAATCAGGTAGAACTTTTGAACAGAAAGATTGACAGTTTTCTTGGTTATTCATAGG
66 CATGCTCTCTAATCAGGTAGAACTTTTGAACAGAAAGATTGACAGTTTTCTTGGTTATTCACAGG
13891358 TTCACC
131 TTCACC
13891364 CAGT
1 CAGT
13891368 AATGCAGTGC
Statistics
Matches: 130, Mismatches: 10, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
136 130 1.00
ACGTcount: A:0.31, C:0.20, G:0.19, T:0.30
Consensus pattern (136 bp):
CAGTGGCAAGTTATAAGGACAACACCAACGAAAACAATCGACATTTTTAACGTCGATTCAGTCAC
CATGCTCTCTAATCAGGTAGAACTTTTGAACAGAAAGATTGACAGTTTTCTTGGTTATTCACAGG
TTCACC
Found at i:13906043 original size:28 final size:28
Alignment explanation
Indices: 13905977--13906134 Score: 217
Period size: 29 Copynumber: 5.5 Consensus size: 28
13905967 CATGAGATTG
* * **
13905977 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
13906006 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
13906034 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
*
13906063 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
13906092 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
13906120 ACACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
13906135 ACTTACTATA
Statistics
Matches: 119, Mismatches: 9, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
28 46 0.39
29 73 0.61
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:13906066 original size:57 final size:58
Alignment explanation
Indices: 13905977--13906132 Score: 219
Period size: 57 Copynumber: 2.7 Consensus size: 58
13905967 CATGAGATTG
* * * *
13905977 GCACTAAGTGTGCGGGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATAT-A
1 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCAAGTTTGATTATATAA
* *
13906034 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAAGTTTGATTATATAA
*
13906092 GCACTAAGTGTGCGAGTTTGATTATATAA-CACTAAGTGTGC
1 GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGC
13906133 GAACTTACTA
Statistics
Matches: 90, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
57 58 0.64
58 32 0.36
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (58 bp):
GCACTAAGTGTGCGAGTTTGATTATGTAAGCACTAAGTGTGCAAGTTTGATTATATAA
Found at i:13906125 original size:86 final size:86
Alignment explanation
Indices: 13905977--13906134 Score: 246
Period size: 86 Copynumber: 1.8 Consensus size: 86
13905967 CATGAGATTG
* *
13905977 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATAGCACTAAG
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATAACACTAAG
13906042 TGTGCGAGTTTGATTATGTAA
66 TGTGCGAGTTTGATTATGTAA
* * * *
13906063 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATAACACTAA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATAACACTAA
13906127 GTGTGCGA
65 GTGTGCGA
13906135 ACTTACTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
86 62 0.95
87 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (86 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATAACACTAAG
TGTGCGAGTTTGATTATGTAA
Found at i:13908167 original size:39 final size:39
Alignment explanation
Indices: 13908113--13908238 Score: 207
Period size: 39 Copynumber: 3.2 Consensus size: 39
13908103 TTCAGTGATG
13908113 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
13908152 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
* * * *
13908191 TATATCCGGACTTAAGGTCTGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
*
13908230 TATGTCCGG
1 TATATCCGG
13908239 GCTAAAGTCC
Statistics
Matches: 82, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
39 82 1.00
ACGTcount: A:0.21, C:0.21, G:0.30, T:0.28
Consensus pattern (39 bp):
TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
Found at i:13908254 original size:39 final size:39
Alignment explanation
Indices: 13908113--13908265 Score: 191
Period size: 39 Copynumber: 3.9 Consensus size: 39
13908103 TTCAGTGATG
* *
13908113 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
13908152 TATATCCGGACTTAGGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* *
13908191 TATATCCGGACTTAAGGTCTGCAGGCTACGTGCTGGAAA
1 TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
* * * * *
13908230 TATGTCCGGGC-TAAAGTCCCGCAGGCTTCGAGCTGG
1 TATATCCGGACTTAAGGT-CCGCAGGCTACGTGCTGG
13908266 TACTATACCG
Statistics
Matches: 103, Mismatches: 10, Indels: 2
0.90 0.09 0.02
Matches are distributed among these distances:
38 5 0.05
39 98 0.95
ACGTcount: A:0.21, C:0.22, G:0.31, T:0.26
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTACGTGCTGGAAT
Found at i:13911940 original size:25 final size:25
Alignment explanation
Indices: 13911911--13911988 Score: 69
Period size: 25 Copynumber: 3.2 Consensus size: 25
13911901 ATTCTACCTT
13911911 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
* *
13911936 AT--CACAT-TGGCCA--TTCGGCCTT-
1 ATCACACATAT-G-CATGTTC-ACATTC
13911958 ATCACACATATGCATGTTCACATTC
1 ATCACACATATGCATGTTCACATTC
13911983 ATCACA
1 ATCACA
13911989 TTGGCCATTC
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 11 0.28
25 12 0.30
ACGTcount: A:0.29, C:0.29, G:0.10, T:0.31
Consensus pattern (25 bp):
ATCACACATATGCATGTTCACATTC
Found at i:13911940 original size:47 final size:47
Alignment explanation
Indices: 13911889--13912511 Score: 863
Period size: 47 Copynumber: 13.1 Consensus size: 47
13911879 TTCCACGTTT
**
13911889 ATCACATTGGCCATTCTACCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
13911936 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* *
13911983 ATCACATTGGCCATTCGGCCTTATCACAGATACGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* **
13912030 ATCACATTGGTCATTCGGCCTTATCACACATCCGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* **
13912077 ATCACATTGGTCATTCGGCCTTATCACACATCCGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* **
13912124 ATCACATTGGTCATTCGGCCTTATCACACATCCGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* **
13912171 ATCACATTGGTCATTCGGCCTTATCACACATCCGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * * *
13912218 ATCACATTGGTCATTCGGCCTTATCACAGATATACACT-TCCACGTTT
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
13912265 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
* * * * * * *
13912312 ATCAAATTTGGCCATTCGGCCTTACCACATATATACACT-TCCACGTTT
1 ATCACA-TTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTC
13912360 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCATAC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA-T--T-C
13912411 GTTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
1 ----ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
*
13912462 ATCACATTGGCCATTCGGCCTTATCACACATGTGCATGTTCACATTC
1 ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
13912509 ATC
1 ATC
13912512 TCATAAAATC
Statistics
Matches: 528, Mismatches: 35, Indels: 26
0.90 0.06 0.04
Matches are distributed among these distances:
46 2 0.00
47 437 0.83
48 40 0.08
49 1 0.00
50 1 0.00
51 1 0.00
52 1 0.00
54 1 0.00
55 44 0.08
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (47 bp):
ATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTC
Found at i:13911963 original size:22 final size:22
Alignment explanation
Indices: 13911936--13912010 Score: 57
Period size: 22 Copynumber: 3.3 Consensus size: 22
13911926 GTTCACATTC
13911936 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* *
13911958 ATCACACATAT-G-CATGTTC-ACATT
1 AT--CACAT-TGGCCA--TTCGGCCTT
13911982 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
13912005 ATCACA
1 ATCACA
13912011 GATACGCATG
Statistics
Matches: 40, Mismatches: 4, Indels: 18
0.65 0.06 0.29
Matches are distributed among these distances:
22 12 0.30
23 11 0.28
24 11 0.28
25 6 0.15
ACGTcount: A:0.25, C:0.31, G:0.13, T:0.31
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:13912418 original size:55 final size:55
Alignment explanation
Indices: 13912354--13912510 Score: 249
Period size: 55 Copynumber: 3.0 Consensus size: 55
13912344 ATACACTTCC
13912354 ACGTTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAT
1 ACGTTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAT
13912409 ACGTTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACA-T--T
1 ACGTTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAT
*
13912461 -C----ATCACATTGGCCATTCGGCCTTATCACACATGTGCATGTTCACATTCAT
1 ACGTTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAT
13912511 CTCATAAAAT
Statistics
Matches: 98, Mismatches: 1, Indels: 11
0.89 0.01 0.10
Matches are distributed among these distances:
47 43 0.44
48 1 0.01
50 1 0.01
51 1 0.01
52 1 0.01
54 1 0.01
55 50 0.51
ACGTcount: A:0.25, C:0.28, G:0.13, T:0.34
Consensus pattern (55 bp):
ACGTTTATCACATTGGCCATTCGGCCTTATCACACATATGCATGTTCACATTCAT
Found at i:13912439 original size:22 final size:22
Alignment explanation
Indices: 13912413--13912489 Score: 61
Period size: 22 Copynumber: 3.4 Consensus size: 22
13912403 ATTCATACGT
13912413 TTATCACATTGGCCATTCGGCC
1 TTATCACATTGGCCATTCGGCC
* *
13912435 TTATCACACATAT-G-CATGTTC-ACA
1 TTAT--CACAT-TGGCCA--TTCGGCC
13912459 TTCATCACATTGGCCATTCGGCC
1 TT-ATCACATTGGCCATTCGGCC
13912482 TTATCACA
1 TTATCACA
13912490 CATGTGCATG
Statistics
Matches: 42, Mismatches: 4, Indels: 18
0.66 0.06 0.28
Matches are distributed among these distances:
22 14 0.33
23 11 0.26
24 11 0.26
25 6 0.14
ACGTcount: A:0.25, C:0.30, G:0.13, T:0.32
Consensus pattern (22 bp):
TTATCACATTGGCCATTCGGCC
Found at i:13912444 original size:24 final size:24
Alignment explanation
Indices: 13912417--13912492 Score: 63
Period size: 24 Copynumber: 3.2 Consensus size: 24
13912407 ATACGTTTAT
13912417 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
* *
13912441 CACATAT-G-CATGTTC-ACATTCAT--
1 CACAT-TGGCCA--TTCGGCCTT-ATCA
13912464 CACATTGGCCATTCGGCCTTATCA
1 CACATTGGCCATTCGGCCTTATCA
13912488 CACAT
1 CACAT
13912493 GTGCATGTTC
Statistics
Matches: 39, Mismatches: 4, Indels: 18
0.64 0.07 0.30
Matches are distributed among these distances:
22 6 0.15
23 11 0.28
24 16 0.41
25 6 0.15
ACGTcount: A:0.25, C:0.32, G:0.13, T:0.30
Consensus pattern (24 bp):
CACATTGGCCATTCGGCCTTATCA
Found at i:13912498 original size:102 final size:102
Alignment explanation
Indices: 13912319--13912510 Score: 305
Period size: 102 Copynumber: 1.9 Consensus size: 102
13912309 TTCATCAAAT
* * *
13912319 TTGGCCATTCGGCCTTACCACATATATACACTTCCACGTTTATCACATTGGCCATTCGGCCTTAT
1 TTGGCCATTCGGCCTTACCACACATATACACTTCCACATTCATCACATTGGCCATTCGGCCTTAT
13912384 CACACATATGCATGTTCACATTCATACGTTTATCACA
66 CACACATATGCATGTTCACATTCATACGTTTATCACA
* * *
13912421 TTGGCCATTCGGCCTTATCACACATATGCA-TGTTCACATTCATCACATTGGCCATTCGGCCTTA
1 TTGGCCATTCGGCCTTACCACACATATACACT-TCCACATTCATCACATTGGCCATTCGGCCTTA
*
13912485 TCACACATGTGCATGTTCACATTCAT
65 TCACACATATGCATGTTCACATTCAT
13912511 CTCATAAAAT
Statistics
Matches: 82, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
101 1 0.01
102 81 0.99
ACGTcount: A:0.24, C:0.29, G:0.13, T:0.33
Consensus pattern (102 bp):
TTGGCCATTCGGCCTTACCACACATATACACTTCCACATTCATCACATTGGCCATTCGGCCTTAT
CACACATATGCATGTTCACATTCATACGTTTATCACA
Found at i:13917791 original size:30 final size:30
Alignment explanation
Indices: 13917755--13917815 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
13917745 CATTTAATAC
*
13917755 AAACTTTAGAAAAATTACATTTTTGCCCCT
1 AAACTTTAGAAAAATTACACTTTTGCCCCT
* * *
13917785 AAACTTTTGCATAATTACACTTTTGCCCCT
1 AAACTTTAGAAAAATTACACTTTTGCCCCT
13917815 A
1 A
13917816 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.33, C:0.23, G:0.07, T:0.38
Consensus pattern (30 bp):
AAACTTTAGAAAAATTACACTTTTGCCCCT
Found at i:13922969 original size:15 final size:15
Alignment explanation
Indices: 13922949--13922995 Score: 58
Period size: 15 Copynumber: 3.1 Consensus size: 15
13922939 ATATATATAT
13922949 TTCAATCAATATAAA
1 TTCAATCAATATAAA
* * *
13922964 TTCAATCAAAATGAT
1 TTCAATCAATATAAA
*
13922979 TTCAATCAATAAAAA
1 TTCAATCAATATAAA
13922994 TT
1 TT
13922996 TGATAAATTC
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
15 25 1.00
ACGTcount: A:0.51, C:0.13, G:0.02, T:0.34
Consensus pattern (15 bp):
TTCAATCAATATAAA
Found at i:13923406 original size:51 final size:51
Alignment explanation
Indices: 13923306--13923427 Score: 149
Period size: 51 Copynumber: 2.4 Consensus size: 51
13923296 CCCAAATTTT
* * * *
13923306 CTTCATACTTT-ATCCGGAAATATTACTTTGTTGTTCTGCCTTCATCAAGAA
1 CTTCATA-TTTCATCCGGATATATTACTTTATTGCTCTGCCTTCAACAAGAA
* * *
13923357 CTTTATATTTCATCCGGATATATTACTTTATTGCTCTAG-TTTCAACAAGAG
1 CTTCATATTTCATCCGGATATATTACTTTATTGCTCT-GCCTTCAACAAGAA
13923408 CTTCATATTTCATCCGGATA
1 CTTCATATTTCATCCGGATA
13923428 ACTTAGTTCT
Statistics
Matches: 61, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
50 3 0.05
51 57 0.93
52 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.11, T:0.42
Consensus pattern (51 bp):
CTTCATATTTCATCCGGATATATTACTTTATTGCTCTGCCTTCAACAAGAA
Found at i:13924657 original size:13 final size:14
Alignment explanation
Indices: 13924620--13924649 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
13924610 GATTAACTTC
13924620 ATAAATATTTT-TA
1 ATAAATATTTTCTA
13924633 ATAAATATTTTCTA
1 ATAAATATTTTCTA
13924647 ATA
1 ATA
13924650 CATTTTTCAG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 11 0.69
14 5 0.31
ACGTcount: A:0.47, C:0.03, G:0.00, T:0.50
Consensus pattern (14 bp):
ATAAATATTTTCTA
Found at i:13931224 original size:12 final size:12
Alignment explanation
Indices: 13931195--13931234 Score: 53
Period size: 12 Copynumber: 3.3 Consensus size: 12
13931185 AATACATCCT
*
13931195 CGACCACGTCCC
1 CGACCACGTCCA
*
13931207 CTACCACGTCCA
1 CGACCACGTCCA
*
13931219 CGACCACGGCCA
1 CGACCACGTCCA
13931231 CGAC
1 CGAC
13931235 TTTTATATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.23, C:0.53, G:0.17, T:0.07
Consensus pattern (12 bp):
CGACCACGTCCA
Found at i:13935374 original size:7 final size:8
Alignment explanation
Indices: 13935356--13935380 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
13935346 CAATCTTTGG
13935356 AAAAATTA
1 AAAAATTA
13935364 AAAAATTA
1 AAAAATTA
13935372 AAAAATTA
1 AAAAATTA
13935380 A
1 A
13935381 CTTCATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (8 bp):
AAAAATTA
Found at i:13935562 original size:10 final size:10
Alignment explanation
Indices: 13935547--13935584 Score: 58
Period size: 10 Copynumber: 3.7 Consensus size: 10
13935537 ATAACTTTAT
13935547 TTAAATATAA
1 TTAAATATAA
13935557 TTAAATAATAA
1 TTAAAT-ATAA
*
13935568 TTAATTATAA
1 TTAAATATAA
13935578 TTAAATA
1 TTAAATA
13935585 CTAAAACTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
10 16 0.64
11 9 0.36
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (10 bp):
TTAAATATAA
Found at i:13935689 original size:17 final size:17
Alignment explanation
Indices: 13935669--13935701 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
13935659 TATTTATTTA
13935669 TAATAATTATAATTAAT
1 TAATAATTATAATTAAT
*
13935686 TAATAATTATATTTAA
1 TAATAATTATAATTAA
13935702 ATAAAAATAT
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (17 bp):
TAATAATTATAATTAAT
Found at i:13939489 original size:36 final size:36
Alignment explanation
Indices: 13939421--13939641 Score: 122
Period size: 36 Copynumber: 6.0 Consensus size: 36
13939411 AATATAGAGG
* * * * **
13939421 TTGTGCCTAGCACTAGTTAGTTAAACTAACGAAGAT
1 TTGTGCCCAGCGCTAGTCAGATAAACCGACGAAGAT
* * *
13939457 TTGGGCCCAGCGCTAGTCAGATAATCCGACGAATAAAAT
1 TTGTGCCCAGCGCTAGTCAGATAAACCGACG---AAGAT
* * * **
13939496 GATGTGCCCAACACTAGTCAGATAAACCGGTGAAGAT
1 -TTGTGCCCAGCGCTAGTCAGATAAACCGACGAAGAT
** * * * *
13939533 TTGCACCCAGCGCTAGTCGGATATGACGGA-TATA-AT
1 TTGTGCCCAGCGCTAGTCAGATA-AACCGACGA-AGAT
* * * *
13939569 AATGTGCCCAGCTCTAGTCAGTTAAACTGACGAAGAT
1 -TTGTGCCCAGCGCTAGTCAGATAAACCGACGAAGAT
* * *
13939606 TTGTGCCCAACGCTAGTCAGATAAATCAACGAAGAT
1 TTGTGCCCAGCGCTAGTCAGATAAACCGACGAAGAT
13939642 AATGATATGC
Statistics
Matches: 133, Mismatches: 43, Indels: 18
0.69 0.22 0.09
Matches are distributed among these distances:
36 77 0.58
37 28 0.21
39 4 0.03
40 24 0.18
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.24
Consensus pattern (36 bp):
TTGTGCCCAGCGCTAGTCAGATAAACCGACGAAGAT
Found at i:13939604 original size:73 final size:74
Alignment explanation
Indices: 13939381--13939760 Score: 321
Period size: 76 Copynumber: 5.1 Consensus size: 74
13939371 ATAAATAAGT
* * * * * *
13939381 TTTGCGCCCAGCGCTAGTCGGATAATGACAAATATAGAGGTTGTGCCTAGCACTAGTTAGTTAAA
1 TTTGCGCCCAGCGCTAGTCAGATAATGACGAATATA-ATGATGTGCCCAGCACTAGTCAGTTAAA
*
13939446 CTAACGAAGA
65 CTGACGAAGA
* * * *
13939456 TTTGGGCCCAGCGCTAGTCAGATAATCCGACGAATAAAATGATGTGCCCAACACTAGTCAGATAA
1 TTTGCGCCCAGCGCTAGTCAGATAAT--GACGAATATAATGATGTGCCCAGCACTAGTCAGTTAA
* **
13939521 ACCGGTGAAGA
64 ACTGACGAAGA
* * * * *
13939532 TTTGCACCCAGCGCTAGTCGGAT-ATGACGGATATAATAATGTGCCCAGCTCTAGTCAGTTAAAC
1 TTTGCGCCCAGCGCTAGTCAGATAATGACGAATATAATGATGTGCCCAGCACTAGTCAGTTAAAC
13939596 TGACGAAGA
66 TGACGAAGA
* * * * * ** * *
13939605 TTTGTGCCCAACGCTAGTCAGATAAATCAACGAAGATAATGATATGCCCAATACTAGTAAGGTAA
1 TTTGCGCCCAGCGCTAGTCAGAT-AAT-GACGAATATAATGATGTGCCCAGCACTAGTCAGTTAA
* *
13939670 ATTGACAAAGA
64 ACTGACGAAGA
* ** ** * * **
13939681 TTTGTGCCCAATGCTAGTTGGATAAACTAACGAAGATAATGATGTGCCCAGCACTAGTCACATAA
1 TTTGCGCCCAGCGCTAGTCAGAT-AA-TGACGAATATAATGATGTGCCCAGCACTAGTCAGTTAA
* *
13939746 ATTGATGAAGA
64 ACTGACGAAGA
13939757 TTTG
1 TTTG
13939761 TTCACCAAGA
Statistics
Matches: 246, Mismatches: 53, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
73 58 0.24
75 28 0.11
76 151 0.61
77 9 0.04
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (74 bp):
TTTGCGCCCAGCGCTAGTCAGATAATGACGAATATAATGATGTGCCCAGCACTAGTCAGTTAAAC
TGACGAAGA
Found at i:13939662 original size:40 final size:40
Alignment explanation
Indices: 13939607--13939747 Score: 112
Period size: 40 Copynumber: 3.6 Consensus size: 40
13939597 GACGAAGATT
*
13939607 TGTGCCCAACGCTAGTCAGATAAATCAACGAAGATAATGA
1 TGTGCCCAACACTAGTCAGATAAATCAACGAAGATAATGA
* * * * ** *
13939647 TATGCCCAATACTAGTAAGGTAAATTGACAAAGAT--T--
1 TGTGCCCAACACTAGTCAGATAAATCAACGAAGATAATGA
** **
13939683 TGTGCCCAATGCTAGTTGGATAAA-CTAACGAAGATAATGA
1 TGTGCCCAACACTAGTCAGATAAATC-AACGAAGATAATGA
* *
13939723 TGTGCCCAGCACTAGTCACATAAAT
1 TGTGCCCAACACTAGTCAGATAAAT
13939748 TGATGAAGAT
Statistics
Matches: 73, Mismatches: 22, Indels: 11
0.69 0.21 0.10
Matches are distributed among these distances:
36 26 0.36
38 2 0.03
40 45 0.62
ACGTcount: A:0.38, C:0.18, G:0.19, T:0.24
Consensus pattern (40 bp):
TGTGCCCAACACTAGTCAGATAAATCAACGAAGATAATGA
Found at i:13939681 original size:149 final size:150
Alignment explanation
Indices: 13939381--13939761 Score: 406
Period size: 149 Copynumber: 2.5 Consensus size: 150
13939371 ATAAATAAGT
* * * * *
13939381 TTTGCGCCCAGCGCTAGTCGGATAATGACAAATATAGAGGTTGTGCCTAGCACTAGTTAGTTAAA
1 TTTGCGCCCAGCGCTAGTCGGATAATGACGAATATA-ATGATGTGCCCAGCACTAGTCAGTTAAA
* * * * * *
13939446 CTAACGAAGATTTGGGCCCAGCGCTAGTCAGATAATCCGACGAATAAAATGATGTGCCCAACACT
65 CTGACGAAGATTTGTGCCCAACGCTAGTCAGATAATCCAACGAAGAAAATGATATGCCCAACACT
* ***
13939511 AGTCAGATAAACCGGTGAAGA
130 AGTAAGATAAACCGACAAAGA
* * * *
13939532 TTTGCACCCAGCGCTAGTCGGAT-ATGACGGATATAATAATGTGCCCAGCTCTAGTCAGTTAAAC
1 TTTGCGCCCAGCGCTAGTCGGATAATGACGAATATAATGATGTGCCCAGCACTAGTCAGTTAAAC
* *
13939596 TGACGAAGATTTGTGCCCAACGCTAGTCAGATAAAT-CAACGAAGATAATGATATGCCCAATACT
66 TGACGAAGATTTGTGCCCAACGCTAGTCAGAT-AATCCAACGAAGAAAATGATATGCCCAACACT
* **
13939660 AGTAAGGTAAATTGACAAAGA
130 AGTAAGATAAACCGACAAAGA
* ** * * * **
13939681 TTTGTGCCCAATGCTAGTTGGATAAACTAACGAAGATAATGATGTGCCCAGCACTAGTCACATAA
1 TTTGCGCCCAGCGCTAGTCGGAT-AA-TGACGAATATAATGATGTGCCCAGCACTAGTCAGTTAA
* *
13939746 ATTGATGAAGATTTGT
64 ACTGACGAAGATTTGT
13939762 TCACCAAGAA
Statistics
Matches: 188, Mismatches: 38, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
149 107 0.57
150 13 0.07
151 23 0.12
152 45 0.24
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.25
Consensus pattern (150 bp):
TTTGCGCCCAGCGCTAGTCGGATAATGACGAATATAATGATGTGCCCAGCACTAGTCAGTTAAAC
TGACGAAGATTTGTGCCCAACGCTAGTCAGATAATCCAACGAAGAAAATGATATGCCCAACACTA
GTAAGATAAACCGACAAAGA
Found at i:13939717 original size:36 final size:36
Alignment explanation
Indices: 13939591--13939717 Score: 98
Period size: 36 Copynumber: 3.4 Consensus size: 36
13939581 TCTAGTCAGT
* *
13939591 TAAACTGACGAAGATTTGTGCCCAACGCTAGTCA-GA
1 TAAACTAACGAAGATTTGTGCCCAATGCTAGT-AGGA
* *
13939627 TAAA-TCAACGAAGATAATGATATGCCCAATACTAGTAAGG-
1 TAAACT-AACGAAGAT--T--TGTGCCCAATGCTAGT-AGGA
* * * *
13939667 TAAATTGACAAAGATTTGTGCCCAATGCTAGTTGGA
1 TAAACTAACGAAGATTTGTGCCCAATGCTAGTAGGA
13939703 TAAACTAACGAAGAT
1 TAAACTAACGAAGAT
13939718 AATGATGTGC
Statistics
Matches: 70, Mismatches: 13, Indels: 16
0.71 0.13 0.16
Matches are distributed among these distances:
35 3 0.04
36 38 0.54
38 2 0.03
40 25 0.36
41 2 0.03
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.24
Consensus pattern (36 bp):
TAAACTAACGAAGATTTGTGCCCAATGCTAGTAGGA
Found at i:13942554 original size:23 final size:23
Alignment explanation
Indices: 13942528--13942573 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
13942518 TAAGTCCCTA
13942528 CCCATGCTAGCTGAATTTCTCTT
1 CCCATGCTAGCTGAATTTCTCTT
13942551 CCCATGCTAGCTGAATTTCTCTT
1 CCCATGCTAGCTGAATTTCTCTT
13942574 ACTACCATAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.17, C:0.30, G:0.13, T:0.39
Consensus pattern (23 bp):
CCCATGCTAGCTGAATTTCTCTT
Found at i:13943676 original size:17 final size:18
Alignment explanation
Indices: 13943644--13943678 Score: 54
Period size: 17 Copynumber: 2.0 Consensus size: 18
13943634 GAGGTTGTAA
*
13943644 AATATATGGTAAAATATG
1 AATAAATGGTAAAATATG
13943662 AATAAATGG-AAAATATG
1 AATAAATGGTAAAATATG
13943679 GGCTGTCATG
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.54, C:0.00, G:0.17, T:0.29
Consensus pattern (18 bp):
AATAAATGGTAAAATATG
Found at i:13950643 original size:40 final size:40
Alignment explanation
Indices: 13950588--13950728 Score: 194
Period size: 40 Copynumber: 3.5 Consensus size: 40
13950578 TATTCGGATG
13950588 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
13950628 ATATCCAGGCTAAGTCCCGAAGGCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
13950668 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
13950708 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
13950729 ATACTTGGGA
Statistics
Matches: 87, Mismatches: 14, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
39 13 0.15
40 74 0.85
ACGTcount: A:0.26, C:0.24, G:0.25, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:13950779 original size:83 final size:83
Alignment explanation
Indices: 13950682--13950848 Score: 334
Period size: 83 Copynumber: 2.0 Consensus size: 83
13950672 CCGGGCTAAG
13950682 ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGATACTTGGGATTGGAAGC
1 ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGATACTTGGGATTGGAAGC
13950747 GAGCGATCTTGCTGTAAT
66 GAGCGATCTTGCTGTAAT
13950765 ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGATACTTGGGATTGGAAGC
1 ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGATACTTGGGATTGGAAGC
13950830 GAGCGATCTTGCTGTAAT
66 GAGCGATCTTGCTGTAAT
13950848 A
1 A
13950849 ATTTCAGTTA
Statistics
Matches: 84, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
83 84 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.26
Consensus pattern (83 bp):
ACCCGAAGGCATTTGTGCGAGTTGCTATATCCGGCTAAATCCCGAAGATACTTGGGATTGGAAGC
GAGCGATCTTGCTGTAAT
Found at i:13963507 original size:13 final size:13
Alignment explanation
Indices: 13963473--13963510 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
13963463 ATGAGATGCC
*
13963473 GCATCAACAGCTT
1 GCATCAACAGATT
*
13963486 -CATCTACAGATT
1 GCATCAACAGATT
13963498 GCATCAACAGATT
1 GCATCAACAGATT
13963511 TGCTGTGCTT
Statistics
Matches: 21, Mismatches: 3, Indels: 2
0.81 0.12 0.08
Matches are distributed among these distances:
12 10 0.48
13 11 0.52
ACGTcount: A:0.34, C:0.26, G:0.13, T:0.26
Consensus pattern (13 bp):
GCATCAACAGATT
Found at i:13967664 original size:19 final size:19
Alignment explanation
Indices: 13967635--13967679 Score: 65
Period size: 19 Copynumber: 2.4 Consensus size: 19
13967625 GTATATATTT
*
13967635 TAAATTTATTTAGG-TAGA
1 TAAATTTATTTAGGAAAGA
13967653 TAAATCTTATTTAGGAAAGA
1 TAAAT-TTATTTAGGAAAGA
13967673 TAAATTT
1 TAAATTT
13967680 TATTCATATT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
18 5 0.21
19 11 0.46
20 8 0.33
ACGTcount: A:0.42, C:0.02, G:0.13, T:0.42
Consensus pattern (19 bp):
TAAATTTATTTAGGAAAGA
Found at i:13967682 original size:20 final size:19
Alignment explanation
Indices: 13967635--13967683 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
13967625 GTATATATTT
*
13967635 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
13967653 TAAATCTTATTTAGGAAAGA
1 TAAATTTTATTTAGG-AAGA
13967673 TAAATTTTATT
1 TAAATTTTATT
13967684 CATATTTTAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 4 0.15
19 9 0.35
20 13 0.50
ACGTcount: A:0.41, C:0.02, G:0.12, T:0.45
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:13967766 original size:42 final size:42
Alignment explanation
Indices: 13967707--13967790 Score: 150
Period size: 42 Copynumber: 2.0 Consensus size: 42
13967697 TATTTTTATT
13967707 TTATCTTTTAATAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTTAATAGTTTATTAGAATAAGGGAACTATTTTCCC
* *
13967749 TTATGTTTTAGTAGTTTATTAGAATAAGGGAACTATTTTCCC
1 TTATCTTTTAATAGTTTATTAGAATAAGGGAACTATTTTCCC
13967791 ATTTAGGATT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 40 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.45
Consensus pattern (42 bp):
TTATCTTTTAATAGTTTATTAGAATAAGGGAACTATTTTCCC
Found at i:13969518 original size:33 final size:33
Alignment explanation
Indices: 13969476--13969542 Score: 125
Period size: 33 Copynumber: 2.0 Consensus size: 33
13969466 ACATCCAAGG
*
13969476 TAAACTAGATCCTAGAGCAATAAAATGTGTCTT
1 TAAACTAGATCCTAGAGCAACAAAATGTGTCTT
13969509 TAAACTAGATCCTAGAGCAACAAAATGTGTCTT
1 TAAACTAGATCCTAGAGCAACAAAATGTGTCTT
13969542 T
1 T
13969543 GTTGGCTATG
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 33 1.00
ACGTcount: A:0.39, C:0.16, G:0.15, T:0.30
Consensus pattern (33 bp):
TAAACTAGATCCTAGAGCAACAAAATGTGTCTT
Found at i:13972815 original size:33 final size:33
Alignment explanation
Indices: 13972773--13973654 Score: 1746
Period size: 33 Copynumber: 26.7 Consensus size: 33
13972763 TTTCTTCTTG
*
13972773 ACATTCCAGCTACTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13972806 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13972839 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13972872 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13972905 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13972938 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13972971 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973004 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973037 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973070 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973103 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973136 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973169 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973202 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973235 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973268 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973301 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973334 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973367 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973400 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973433 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973466 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973499 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973532 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973565 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
*
13973598 ACATTCCAGCTCCCGTCCAGCAACCAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
13973631 ACATTCCAGCTCCTGTCCAGCAAC
1 ACATTCCAGCTCCTGTCCAGCAAC
13973655 TTGAAACAGA
Statistics
Matches: 846, Mismatches: 3, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 846 1.00
ACGTcount: A:0.30, C:0.42, G:0.09, T:0.18
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACCAAACACTC
Found at i:13976576 original size:19 final size:19
Alignment explanation
Indices: 13976530--13976577 Score: 71
Period size: 19 Copynumber: 2.6 Consensus size: 19
13976520 GTATATATTT
*
13976530 TAAA-TTTATTTAGGTAGA
1 TAAATTTTATTTAGGAAGA
*
13976548 TAAATCTTATTTAGGAAGA
1 TAAATTTTATTTAGGAAGA
13976567 TAAATTTTATT
1 TAAATTTTATT
13976578 CATATTCTAA
Statistics
Matches: 26, Mismatches: 3, Indels: 1
0.87 0.10 0.03
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.40, C:0.02, G:0.12, T:0.46
Consensus pattern (19 bp):
TAAATTTTATTTAGGAAGA
Found at i:13977292 original size:50 final size:50
Alignment explanation
Indices: 13977217--13977319 Score: 188
Period size: 50 Copynumber: 2.1 Consensus size: 50
13977207 AAATCTCCTC
13977217 CTAAGGCAAATAGTCATGCTGCCTATTGGTAGAGTGTTGGACTTTTAGTT
1 CTAAGGCAAATAGTCATGCTGCCTATTGGTAGAGTGTTGGACTTTTAGTT
* *
13977267 CTAAGGTAAATGGTCATGCTGCCTATTGGTAGAGTGTTGGACTTTTAGTT
1 CTAAGGCAAATAGTCATGCTGCCTATTGGTAGAGTGTTGGACTTTTAGTT
13977317 CTA
1 CTA
13977320 GTGACCAGGG
Statistics
Matches: 51, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 51 1.00
ACGTcount: A:0.23, C:0.14, G:0.26, T:0.37
Consensus pattern (50 bp):
CTAAGGCAAATAGTCATGCTGCCTATTGGTAGAGTGTTGGACTTTTAGTT
Found at i:13987607 original size:78 final size:78
Alignment explanation
Indices: 13987516--13987673 Score: 282
Period size: 78 Copynumber: 2.0 Consensus size: 78
13987506 ATGATCTATA
13987516 GGCTCTTCGGAGTGACACCATGTAAACAGTATAAAAGCTCTATGAAGTGACACCTCGAAAAATAT
1 GGCTCTTCGGAGTGACACCATGTAAACAGTATAAAAGCTCTATGAAGTGACACCTCGAAAAATAT
13987581 TTACTGACTCTTC
66 TTACTGACTCTTC
* *
13987594 GGCTCTTAC-GAGTGACATCATGTAAACAGTATAAAAGCTCTATGAAGTGACACTTCGAAAAATA
1 GGCTCTT-CGGAGTGACACCATGTAAACAGTATAAAAGCTCTATGAAGTGACACCTCGAAAAATA
13987658 TTTACTGACTCTTC
65 TTTACTGACTCTTC
13987672 GG
1 GG
13987674 AGCTAAAAGA
Statistics
Matches: 77, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
78 76 0.99
79 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.18, T:0.28
Consensus pattern (78 bp):
GGCTCTTCGGAGTGACACCATGTAAACAGTATAAAAGCTCTATGAAGTGACACCTCGAAAAATAT
TTACTGACTCTTC
Found at i:13988971 original size:31 final size:30
Alignment explanation
Indices: 13988936--13988996 Score: 72
Period size: 31 Copynumber: 2.0 Consensus size: 30
13988926 CTCTTGAAGG
13988936 AAAA-CAAAGAACAA-ATAAACTAAACTCTAAA
1 AAAACCAAAGAA-AACA-AAACTAAA-TCTAAA
*
13988967 AAAACCTAAGAAAACAAAACTAAATCTAAA
1 AAAACCAAAGAAAACAAAACTAAATCTAAA
13988997 GAAAGAATCT
Statistics
Matches: 27, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
30 6 0.22
31 14 0.52
32 7 0.26
ACGTcount: A:0.67, C:0.16, G:0.03, T:0.13
Consensus pattern (30 bp):
AAAACCAAAGAAAACAAAACTAAATCTAAA
Found at i:13992522 original size:32 final size:32
Alignment explanation
Indices: 13992481--13992542 Score: 124
Period size: 32 Copynumber: 1.9 Consensus size: 32
13992471 TTCTGTCACC
13992481 AATTTGACATCAGAAATGAACCTCATACATCA
1 AATTTGACATCAGAAATGAACCTCATACATCA
13992513 AATTTGACATCAGAAATGAACCTCATACAT
1 AATTTGACATCAGAAATGAACCTCATACAT
13992543 AAAAAACATG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.44, C:0.21, G:0.10, T:0.26
Consensus pattern (32 bp):
AATTTGACATCAGAAATGAACCTCATACATCA
Found at i:13993584 original size:29 final size:29
Alignment explanation
Indices: 13993542--13993614 Score: 103
Period size: 29 Copynumber: 2.5 Consensus size: 29
13993532 GTTCAACTAT
*
13993542 CACATTAAACATTTTCAAAGTATAAG-TAC
1 CACATTAGACATTTTCAAAGTAT-AGTTAC
* *
13993571 CACATTGGATATTTTCAAAGTATAGTTAC
1 CACATTAGACATTTTCAAAGTATAGTTAC
13993600 CACATTAGACATTTT
1 CACATTAGACATTTT
13993615 ATGAAAGTAC
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
28 2 0.05
29 36 0.95
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (29 bp):
CACATTAGACATTTTCAAAGTATAGTTAC
Found at i:13993775 original size:49 final size:49
Alignment explanation
Indices: 13993722--13993821 Score: 182
Period size: 49 Copynumber: 2.0 Consensus size: 49
13993712 TTATATTATA
*
13993722 ATTGAGATATATTTACTTGTATATAACATTTATTAATATACTAAAAATT
1 ATTGAGATATATTTACTTATATATAACATTTATTAATATACTAAAAATT
*
13993771 ATTGAGATATATTTACTTATATATAACATTTATTAATGTACTAAAAATT
1 ATTGAGATATATTTACTTATATATAACATTTATTAATATACTAAAAATT
13993820 AT
1 AT
13993822 AAATACACAT
Statistics
Matches: 49, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
49 49 1.00
ACGTcount: A:0.43, C:0.06, G:0.06, T:0.45
Consensus pattern (49 bp):
ATTGAGATATATTTACTTATATATAACATTTATTAATATACTAAAAATT
Found at i:13995019 original size:30 final size:30
Alignment explanation
Indices: 13994983--13995042 Score: 102
Period size: 30 Copynumber: 2.0 Consensus size: 30
13994973 ATTAACAACA
* *
13994983 TTATTAATATATACAACTTATGGAGATAAT
1 TTATTAATATATACAACTGATGAAGATAAT
13995013 TTATTAATATATACAACTGATGAAGATAAT
1 TTATTAATATATACAACTGATGAAGATAAT
13995043 AATTTGTGCG
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.45, C:0.07, G:0.10, T:0.38
Consensus pattern (30 bp):
TTATTAATATATACAACTGATGAAGATAAT
Found at i:13996205 original size:16 final size:17
Alignment explanation
Indices: 13996184--13996216 Score: 50
Period size: 16 Copynumber: 2.0 Consensus size: 17
13996174 AATAATGTGC
*
13996184 ATATGTGTGTAT-ATAT
1 ATATGTATGTATCATAT
13996200 ATATGTATGTATCATAT
1 ATATGTATGTATCATAT
13996217 CAGAAACCAC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 11 0.73
17 4 0.27
ACGTcount: A:0.33, C:0.03, G:0.15, T:0.48
Consensus pattern (17 bp):
ATATGTATGTATCATAT
Found at i:13999451 original size:14 final size:15
Alignment explanation
Indices: 13999423--13999464 Score: 50
Period size: 15 Copynumber: 2.7 Consensus size: 15
13999413 AATATTTTTA
13999423 TAAATATAAAAAAAT
1 TAAATATAAAAAAAT
*
13999438 TAAAT-TAAATAAATTT
1 TAAATATAAA-AAA-AT
13999454 TAAATATAAAA
1 TAAATATAAAA
13999465 TATTCATCAA
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
14 4 0.17
15 8 0.35
16 7 0.30
17 4 0.17
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (15 bp):
TAAATATAAAAAAAT
Found at i:13999465 original size:18 final size:18
Alignment explanation
Indices: 13999400--13999466 Score: 54
Period size: 16 Copynumber: 3.8 Consensus size: 18
13999390 TTAAAAAGCA
**
13999400 TTTAATATATAAAAATATTT
1 TTTAA-ATAT-AAAATAAAT
13999420 TTATAAATATAAAA-AAA-
1 TT-TAAATATAAAATAAAT
13999437 -TTAAAT-T-AAATAAAT
1 TTTAAATATAAAATAAAT
13999452 TTTAAATATAAAATA
1 TTTAAATATAAAATA
13999467 TTCATCAATA
Statistics
Matches: 39, Mismatches: 2, Indels: 14
0.71 0.04 0.25
Matches are distributed among these distances:
13 3 0.08
14 4 0.10
15 5 0.13
16 7 0.18
17 1 0.03
18 6 0.15
19 4 0.10
20 6 0.15
21 3 0.08
ACGTcount: A:0.60, C:0.00, G:0.00, T:0.40
Consensus pattern (18 bp):
TTTAAATATAAAATAAAT
Found at i:14007623 original size:10 final size:9
Alignment explanation
Indices: 14007591--14007626 Score: 54
Period size: 9 Copynumber: 4.0 Consensus size: 9
14007581 TTTACCCACC
14007591 ATTAAAACA
1 ATTAAAACA
*
14007600 ATTAAAAAA
1 ATTAAAACA
14007609 ATTAAAACA
1 ATTAAAACA
*
14007618 ATTTAAACA
1 ATTAAAACA
14007627 CTAACCAGAA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.67, C:0.08, G:0.00, T:0.25
Consensus pattern (9 bp):
ATTAAAACA
Found at i:14013173 original size:24 final size:25
Alignment explanation
Indices: 14013139--14013199 Score: 88
Period size: 24 Copynumber: 2.5 Consensus size: 25
14013129 ATCCAGGCTG
14013139 TATAACGGGAAGCTCCAAAGAGCCA
1 TATAACGGGAAGCTCCAAAGAGCCA
* *
14013164 T-TAACGGGAAGCTCCAGATAGCCA
1 TATAACGGGAAGCTCCAAAGAGCCA
*
14013188 TATATCGGGAAG
1 TATAACGGGAAG
14013200 TTTAAGCAAG
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
24 22 0.69
25 10 0.31
ACGTcount: A:0.36, C:0.21, G:0.26, T:0.16
Consensus pattern (25 bp):
TATAACGGGAAGCTCCAAAGAGCCA
Found at i:14013271 original size:26 final size:26
Alignment explanation
Indices: 14013218--14013277 Score: 77
Period size: 26 Copynumber: 2.3 Consensus size: 26
14013208 AGTTATATCG
* *
14013218 GGAAGCTCACAAAGAGCCTTTAATCA
1 GGAAGCTCACAAAGAGCCTATAAGCA
*
14013244 GGAAGCTCACGAAGAGCC-ATATAGCA
1 GGAAGCTCACAAAGAGCCTATA-AGCA
14013270 GGAAGCTC
1 GGAAGCTC
14013278 GAGAGGGTTG
Statistics
Matches: 30, Mismatches: 3, Indels: 2
0.86 0.09 0.06
Matches are distributed among these distances:
25 2 0.07
26 28 0.93
ACGTcount: A:0.37, C:0.23, G:0.25, T:0.15
Consensus pattern (26 bp):
GGAAGCTCACAAAGAGCCTATAAGCA
Found at i:14014591 original size:20 final size:19
Alignment explanation
Indices: 14014555--14014593 Score: 51
Period size: 20 Copynumber: 2.0 Consensus size: 19
14014545 GATGTATTAT
14014555 TTTTCGAAGATAATTTCCC
1 TTTTCGAAGATAATTTCCC
* *
14014574 TTTTCAGAATATATTTTCCC
1 TTTTC-GAAGATAATTTCCC
14014594 ATTTAAATTC
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.26, C:0.21, G:0.08, T:0.46
Consensus pattern (19 bp):
TTTTCGAAGATAATTTCCC
Found at i:14021063 original size:27 final size:27
Alignment explanation
Indices: 14021018--14021122 Score: 77
Period size: 27 Copynumber: 3.8 Consensus size: 27
14021008 GATCACCCAC
* **
14021018 AAAAATATTTTTAAAAATTTACTTTAT
1 AAAAATAATTTTATTAATTTACTTTAT
* *
14021045 AAAAATAATTTTATTAATTTA-TATGAA
1 AAAAATAATTTTATTAATTTACT-TTAT
* * * *
14021072 AATAAATTACCTTTTACTCACTTACTTTAT
1 AA-AAA-TA-ATTTTATTAATTTACTTTAT
*
14021102 AAAAATAAATTTATTAATTTA
1 AAAAATAATTTTATTAATTTA
14021123 TATGAAAATA
Statistics
Matches: 57, Mismatches: 16, Indels: 10
0.69 0.19 0.12
Matches are distributed among these distances:
26 1 0.02
27 31 0.54
28 5 0.09
29 5 0.09
30 14 0.25
31 1 0.02
ACGTcount: A:0.47, C:0.07, G:0.01, T:0.46
Consensus pattern (27 bp):
AAAAATAATTTTATTAATTTACTTTAT
Found at i:14021087 original size:30 final size:30
Alignment explanation
Indices: 14021053--14021144 Score: 84
Period size: 30 Copynumber: 3.2 Consensus size: 30
14021043 ATAAAAATAA
14021053 TTTTATTAATTTATATGAAAATAAATTACC
1 TTTTATTAATTTATATGAAAATAAATTACC
* * * * * *
14021083 TTTTACTCACTTACT-TTATAA-AAA-TA-A
1 TTTTATTAATTTA-TATGAAAATAAATTACC
*
14021110 ATTTATTAATTTATATGAAAATAAATTACC
1 TTTTATTAATTTATATGAAAATAAATTACC
14021140 TTTTA
1 TTTTA
14021145 CTCACTAAAA
Statistics
Matches: 43, Mismatches: 14, Indels: 10
0.64 0.21 0.15
Matches are distributed among these distances:
26 1 0.02
27 13 0.30
28 5 0.12
29 5 0.12
30 18 0.42
31 1 0.02
ACGTcount: A:0.42, C:0.09, G:0.02, T:0.47
Consensus pattern (30 bp):
TTTTATTAATTTATATGAAAATAAATTACC
Found at i:14021097 original size:57 final size:57
Alignment explanation
Indices: 14021036--14021150 Score: 221
Period size: 57 Copynumber: 2.0 Consensus size: 57
14021026 TTTTAAAAAT
*
14021036 TTACTTTATAAAAATAATTTTATTAATTTATATGAAAATAAATTACCTTTTACTCAC
1 TTACTTTATAAAAATAAATTTATTAATTTATATGAAAATAAATTACCTTTTACTCAC
14021093 TTACTTTATAAAAATAAATTTATTAATTTATATGAAAATAAATTACCTTTTACTCAC
1 TTACTTTATAAAAATAAATTTATTAATTTATATGAAAATAAATTACCTTTTACTCAC
14021150 T
1 T
14021151 AAAATCCAGA
Statistics
Matches: 57, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 57 1.00
ACGTcount: A:0.43, C:0.10, G:0.02, T:0.45
Consensus pattern (57 bp):
TTACTTTATAAAAATAAATTTATTAATTTATATGAAAATAAATTACCTTTTACTCAC
Found at i:14022600 original size:3 final size:3
Alignment explanation
Indices: 14022594--14022646 Score: 106
Period size: 3 Copynumber: 17.7 Consensus size: 3
14022584 TATTTTATTT
14022594 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14022642 ATA AT
1 ATA AT
14022647 GGACGTTCAA
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 50 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:14028832 original size:26 final size:26
Alignment explanation
Indices: 14028803--14028910 Score: 180
Period size: 26 Copynumber: 4.2 Consensus size: 26
14028793 TGGTACAAAG
*
14028803 TGATAATGGGTTAGGTGAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
14028829 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14028855 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
14028881 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
14028907 TGAT
1 TGAT
14028911 TGGCATTTCA
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 76 1.00
ACGTcount: A:0.31, C:0.07, G:0.25, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:14030419 original size:26 final size:26
Alignment explanation
Indices: 14030353--14030428 Score: 89
Period size: 26 Copynumber: 2.8 Consensus size: 26
14030343 AAAAGTAGCT
* * *
14030353 AAATTACTATAATACCCCTATGTATGGA
1 AAATTACTATTATACCCCTA-G-GTGCA
*
14030381 AAATTACTGTTATACCCCTAGGTGCA
1 AAATTACTATTATACCCCTAGGTGCA
*
14030407 AAATTACCATTATACCCCTAGG
1 AAATTACTATTATACCCCTAGG
14030429 GTTAATTTTG
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
26 23 0.55
27 1 0.02
28 18 0.43
ACGTcount: A:0.36, C:0.22, G:0.12, T:0.30
Consensus pattern (26 bp):
AAATTACTATTATACCCCTAGGTGCA
Found at i:14030572 original size:27 final size:26
Alignment explanation
Indices: 14030532--14030672 Score: 165
Period size: 27 Copynumber: 5.2 Consensus size: 26
14030522 AGGAAGCGCC
*
14030532 CTGGTGCCTATGCCACAATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* *
14030559 CTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
14030586 CTGGTGGCTATGCCACGATTATCTGAT
1 CTGGTGGCTATGCCAC-ATTATCTGAT
* * *
14030613 CTGGTAGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCACAT-TATCTGAT
* *
14030640 CTGGTGGCTTTGCCACAATATCTGTAT
1 CTGGTGGCTATGCCACATTATCTG-AT
14030667 CTGGTG
1 CTGGTG
14030673 ACTTCGTCAC
Statistics
Matches: 98, Mismatches: 12, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
26 10 0.10
27 86 0.88
28 2 0.02
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (26 bp):
CTGGTGGCTATGCCACATTATCTGAT
Found at i:14030614 original size:54 final size:53
Alignment explanation
Indices: 14030532--14030672 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
14030522 AGGAAGCGCC
*
14030532 CTGGTGCCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
*
14030586 CTGGTGGCTATGCCACGATTATCTGATCTGGTAGCTCTGCCACATATATCTGTT
1 CTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
* *
14030640 CTGGTGGCTTTGCCACAATATCTGTATCTGGTG
1 CTGGTGGCTATGCCACATTATCTG-ATCTGGTG
14030673 ACTTCGTCAC
Statistics
Matches: 80, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
53 7 0.09
54 73 0.91
ACGTcount: A:0.18, C:0.24, G:0.23, T:0.35
Consensus pattern (53 bp):
CTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTGCCACATATATCTGTT
Found at i:14030683 original size:27 final size:26
Alignment explanation
Indices: 14030543--14030690 Score: 115
Period size: 27 Copynumber: 5.5 Consensus size: 26
14030533 TGGTGCCTAT
* *
14030543 GCCACAATTATCTGATCTGGTGGC-TC
1 GCCACAA-TATCTGTTCTGGTGACTTC
*
14030569 TGCCACATATATCTGTTCTGGTGGCTAT-
1 -GCCACA-ATATCTGTTCTGGTGACT-TC
* *
14030597 GCCACGATTATCTGATCTGGT-AGC-TC
1 GCCAC-AATATCTGTTCTGGTGA-CTTC
* *
14030623 TGCCACATATATCTGTTCTGGTGGCTTT
1 -GCCACA-ATATCTGTTCTGGTGACTTC
14030651 GCCACAATATCTGTATCTGGTGACTTC
1 GCCACAATATCTGT-TCTGGTGACTTC
*
14030678 GTCACAATATCTG
1 GCCACAATATCTG
14030691 GCAGCCTCGC
Statistics
Matches: 99, Mismatches: 11, Indels: 22
0.75 0.08 0.17
Matches are distributed among these distances:
25 1 0.01
26 9 0.09
27 85 0.86
28 3 0.03
29 1 0.01
ACGTcount: A:0.20, C:0.24, G:0.21, T:0.35
Consensus pattern (26 bp):
GCCACAATATCTGTTCTGGTGACTTC
Found at i:14034050 original size:19 final size:19
Alignment explanation
Indices: 14034028--14034064 Score: 74
Period size: 19 Copynumber: 1.9 Consensus size: 19
14034018 GGACACACCC
14034028 GTGTGCCCTTGACATGCCA
1 GTGTGCCCTTGACATGCCA
14034047 GTGTGCCCTTGACATGCC
1 GTGTGCCCTTGACATGCC
14034065 CATGTCCCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.14, C:0.32, G:0.27, T:0.27
Consensus pattern (19 bp):
GTGTGCCCTTGACATGCCA
Found at i:14035227 original size:17 final size:18
Alignment explanation
Indices: 14035205--14035238 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
14035195 CACATTAAAG
14035205 TGTTTT-AGTGAAAACCT
1 TGTTTTCAGTGAAAACCT
*
14035222 TGTTTTCATTGAAAACC
1 TGTTTTCAGTGAAAACC
14035239 CTTCCTTGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.29, C:0.15, G:0.15, T:0.41
Consensus pattern (18 bp):
TGTTTTCAGTGAAAACCT
Found at i:14042881 original size:13 final size:13
Alignment explanation
Indices: 14042857--14042896 Score: 53
Period size: 13 Copynumber: 3.1 Consensus size: 13
14042847 CGTGTGAGTG
*
14042857 CACACGACCGTGT
1 CACACAACCGTGT
*
14042870 CGCACAACCGTGT
1 CACACAACCGTGT
*
14042883 CACACAGCCGTGT
1 CACACAACCGTGT
14042896 C
1 C
14042897 TGGCGTTGTT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
13 23 1.00
ACGTcount: A:0.23, C:0.40, G:0.23, T:0.15
Consensus pattern (13 bp):
CACACAACCGTGT
Found at i:14051888 original size:48 final size:49
Alignment explanation
Indices: 14051808--14051935 Score: 143
Period size: 48 Copynumber: 2.6 Consensus size: 49
14051798 CATCAATGCA
** * * *
14051808 ATATCCCAAATATGGTCTTACA-TGAAATCACATATTGAGGCTGACGCC
1 ATATCCCAAATATGGTCTTACACTGGCATCACATATTAAGACCGACGCC
* * *
14051856 ATATTCCAAATATGGTCTTACACTGGCA-CACATATTAATACCGATGCC
1 ATATCCCAAATATGGTCTTACACTGGCATCACATATTAAGACCGACGCC
* *
14051904 ATGTCCCAGATATGGTCTTACACTGGCTATCA
1 ATATCCCAAATATGGTCTTACACTGGC-ATCA
14051936 TATCAACGTC
Statistics
Matches: 66, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
48 60 0.91
49 4 0.06
50 2 0.03
ACGTcount: A:0.31, C:0.24, G:0.16, T:0.29
Consensus pattern (49 bp):
ATATCCCAAATATGGTCTTACACTGGCATCACATATTAAGACCGACGCC
Found at i:14051938 original size:48 final size:48
Alignment explanation
Indices: 14051865--14051976 Score: 145
Period size: 48 Copynumber: 2.3 Consensus size: 48
14051855 CATATTCCAA
* *
14051865 ATATGGTCTTACACTGGCACACATATTAATACCGATGCCATGTCCCAG
1 ATATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCAG
* ** *
14051913 ATATGGTCTTACACTGGCTA-TCATATCAACGTCGATGCTATGTCCCAG
1 ATATGGTCTTACACTGGC-ACACATATCAACACCGATGCCATGTCCCAG
*
14051961 ACATGGTCTTACACTG
1 ATATGGTCTTACACTG
14051977 ACTCTCATTA
Statistics
Matches: 56, Mismatches: 7, Indels: 2
0.86 0.11 0.03
Matches are distributed among these distances:
48 55 0.98
49 1 0.02
ACGTcount: A:0.27, C:0.26, G:0.18, T:0.29
Consensus pattern (48 bp):
ATATGGTCTTACACTGGCACACATATCAACACCGATGCCATGTCCCAG
Found at i:14061608 original size:47 final size:47
Alignment explanation
Indices: 14061519--14061608 Score: 146
Period size: 47 Copynumber: 1.9 Consensus size: 47
14061509 GGTAAGGTGC
* *
14061519 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGT
1 CGATGCCATATCCCAGACATGGTCTTACACTGACTCATATCTCAAGT
14061566 CGATGCCATATCCCAGACATGGTCTTACACTGACT-ATCATCTC
1 CGATGCCATATCCCAGACATGGTCTTACACTGACTCAT-ATCTC
14061609 GTAGCCGGTG
Statistics
Matches: 40, Mismatches: 2, Indels: 2
0.91 0.05 0.05
Matches are distributed among these distances:
46 2 0.05
47 38 0.95
ACGTcount: A:0.24, C:0.31, G:0.17, T:0.28
Consensus pattern (47 bp):
CGATGCCATATCCCAGACATGGTCTTACACTGACTCATATCTCAAGT
Found at i:14061630 original size:47 final size:46
Alignment explanation
Indices: 14061517--14061734 Score: 212
Period size: 46 Copynumber: 4.7 Consensus size: 46
14061507 TGGGTAAGGT
*
14061517 GCCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTC-AA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCT-ATCATCTCGTA
* * *
14061564 GTCGATGCCATATCCCAGACATGGTCTTACACTGACTATCATCTCGTA
1 GCCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTATCATCTCGTA
* * * *
14061612 GCCGGTGCATGTCGCAGACATGTCTTACATTGGCT-TACGTCTCG-A
1 GCCGATGCATGTCCCAGACATGTCTTACACTGGCTAT-CATCTCGTA
* * * *
14061657 GACCGATGTATGTCCCAGACATGTCTTACACTGGTTATCATAAT-GTG
1 G-CCGATGCATGTCCCAGACATGTCTTACACTGGCTATCAT-CTCGTA
*
14061704 GTCGATGCATGTCCCAGACATGTCTTACACT
1 GCCGATGCATGTCCCAGACATGTCTTACACT
14061735 AGCTCACAAA
Statistics
Matches: 143, Mismatches: 21, Indels: 15
0.80 0.12 0.08
Matches are distributed among these distances:
45 3 0.02
46 80 0.56
47 54 0.38
48 6 0.04
ACGTcount: A:0.23, C:0.28, G:0.21, T:0.29
Consensus pattern (46 bp):
GCCGATGCATGTCCCAGACATGTCTTACACTGGCTATCATCTCGTA
Found at i:14074319 original size:36 final size:36
Alignment explanation
Indices: 14074272--14074345 Score: 148
Period size: 36 Copynumber: 2.1 Consensus size: 36
14074262 TCTGGCTTCA
14074272 TCCTTCGAAGTTTCTGCTGAACTGGTTTGCATTCTT
1 TCCTTCGAAGTTTCTGCTGAACTGGTTTGCATTCTT
14074308 TCCTTCGAAGTTTCTGCTGAACTGGTTTGCATTCTT
1 TCCTTCGAAGTTTCTGCTGAACTGGTTTGCATTCTT
14074344 TC
1 TC
14074346 TTTATGGGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 38 1.00
ACGTcount: A:0.14, C:0.23, G:0.19, T:0.45
Consensus pattern (36 bp):
TCCTTCGAAGTTTCTGCTGAACTGGTTTGCATTCTT
Found at i:14077912 original size:252 final size:252
Alignment explanation
Indices: 14077467--14077969 Score: 979
Period size: 252 Copynumber: 2.0 Consensus size: 252
14077457 GGGGCAAAAC
*
14077467 TATAATTTTTCCATAAAGTGAATTATGGACTGTTTTGATACCATGAACATTTGGCTAAGCTTAAT
1 TATAATTTTGCCATAAAGTGAATTATGGACTGTTTTGATACCATGAACATTTGGCTAAGCTTAAT
14077532 TACGGTTAAAAATGGTTAATTTACATGTTTTGAGCTCAGGGACTAAAATGAATAAAAGTAAAACT
66 TACGGTTAAAAATGGTTAATTTACATGTTTTGAGCTCAGGGACTAAAATGAATAAAAGTAAAACT
14077597 TTAGGGGTAATTTTGTAAAAATGACAAAATGACCAAATTGTATGAAATGAGGTGTTTTAATGTCT
131 TTAGGGGTAATTTTGTAAAAATGACAAAATGACCAAATTGTATGAAATGAGGTGTTTTAATGTCT
14077662 AAATTAATATACTGAATGAAATTATTAATTTAGATCAAGATCAGGTGGAAAATCGAT
196 AAATTAATATACTGAATGAAATTATTAATTTAGATCAAGATCAGGTGGAAAATCGAT
14077719 TATAATTTTGCCATAAAGTGAATTATGGACTGTTTTGATACCATGAACATTTGGCTAAGCTTAAT
1 TATAATTTTGCCATAAAGTGAATTATGGACTGTTTTGATACCATGAACATTTGGCTAAGCTTAAT
*
14077784 TATGGTTAAAAATGGTTAATTTACATGTTTTGAGCTCAGGGACTAAAATGAATAAAAGTAAAACT
66 TACGGTTAAAAATGGTTAATTTACATGTTTTGAGCTCAGGGACTAAAATGAATAAAAGTAAAACT
14077849 TTAGGGGTAATTTTGTAAAAATGACAAAATGACCAAATTGTATGAAATGAGGTGTTTTAATGTCT
131 TTAGGGGTAATTTTGTAAAAATGACAAAATGACCAAATTGTATGAAATGAGGTGTTTTAATGTCT
*
14077914 AAATTAATATACTGAATGAAATTATTAATTTAGATCAAGATCGGGTGGAAAATCGA
196 AAATTAATATACTGAATGAAATTATTAATTTAGATCAAGATCAGGTGGAAAATCGA
14077970 GAAAAATGAG
Statistics
Matches: 248, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
252 248 1.00
ACGTcount: A:0.39, C:0.09, G:0.18, T:0.34
Consensus pattern (252 bp):
TATAATTTTGCCATAAAGTGAATTATGGACTGTTTTGATACCATGAACATTTGGCTAAGCTTAAT
TACGGTTAAAAATGGTTAATTTACATGTTTTGAGCTCAGGGACTAAAATGAATAAAAGTAAAACT
TTAGGGGTAATTTTGTAAAAATGACAAAATGACCAAATTGTATGAAATGAGGTGTTTTAATGTCT
AAATTAATATACTGAATGAAATTATTAATTTAGATCAAGATCAGGTGGAAAATCGAT
Found at i:14079479 original size:40 final size:40
Alignment explanation
Indices: 14079379--14079723 Score: 321
Period size: 40 Copynumber: 8.7 Consensus size: 40
14079369 GCTCCTCGTT
* * * * *
14079379 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* ** *
14079419 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
*
14079458 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
14079498 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
14079538 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
14079579 CAAA-GCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
* *
14079618 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTATCTCGCA
** * * *
14079658 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGT-ATC-TCGCA
*
14079699 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
14079724 CAGCATTCAA
Statistics
Matches: 257, Mismatches: 33, Indels: 30
0.80 0.10 0.09
Matches are distributed among these distances:
39 53 0.21
40 172 0.67
41 32 0.12
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
Found at i:14079590 original size:120 final size:120
Alignment explanation
Indices: 14079463--14079723 Score: 513
Period size: 120 Copynumber: 2.2 Consensus size: 120
14079453 TCGCACGAAT
*
14079463 GCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 GCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
14079528 GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAA
66 GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAA
14079583 GCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 GCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
14079648 GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAA
66 GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAA
14079703 GCCTTCGGGACTTAGCCCGGA
1 GCCTTCGGGACTTAGCCCGGA
14079724 CAGCATTCAA
Statistics
Matches: 140, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
120 140 1.00
ACGTcount: A:0.24, C:0.27, G:0.22, T:0.27
Consensus pattern (120 bp):
GCCTTCGGGACTTAGCCCGGATTTAGTATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTAGCACAAA
Found at i:14081582 original size:27 final size:27
Alignment explanation
Indices: 14081552--14081730 Score: 171
Period size: 27 Copynumber: 6.6 Consensus size: 27
14081542 CACCCTAGGC
14081552 GTAAAATGGTAATTTTATAAATCGAGG
1 GTAAAATGGTAATTTTATAAATCGAGG
* *
14081579 GTAAAACGGTAATTCTATAAATCGAGG
1 GTAAAATGGTAATTTTATAAATCGAGG
* * *
14081606 GTAAAATAGTAATGTTGTAAATCGAGG
1 GTAAAATGGTAATTTTATAAATCGAGG
** *
14081633 GTAAAACAGTAATTTTGTAAATCGAGG
1 GTAAAATGGTAATTTTATAAATCGAGG
** * *
14081660 GTAAAATAATAATTTTGTCAATCGAGG
1 GTAAAATGGTAATTTTATAAATCGAGG
* ** *
14081687 AT-ATTTGGGTAATTTTATAAACCGAGG
1 GTAAAAT-GGTAATTTTATAAATCGAGG
***
14081714 GTACTTTGGTAATTTTA
1 GTAAAATGGTAATTTTA
14081731 CAACTGGGGG
Statistics
Matches: 128, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
26 2 0.02
27 123 0.96
28 3 0.02
ACGTcount: A:0.38, C:0.07, G:0.22, T:0.34
Consensus pattern (27 bp):
GTAAAATGGTAATTTTATAAATCGAGG
Found at i:14081634 original size:54 final size:54
Alignment explanation
Indices: 14081552--14081686 Score: 198
Period size: 54 Copynumber: 2.5 Consensus size: 54
14081542 CACCCTAGGC
* * *
14081552 GTAAAATGGTAATTTTATAAATCGAGGGTAAAACGGTAATTCTATAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGG
* * *
14081606 GTAAAATAGTAATGTTGTAAATCGAGGGTAAAACAGTAATTTTGTAAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGG
* *
14081660 GTAAAATAATAATTTTGTCAATCGAGG
1 GTAAAATAGTAATTTTGTAAATCGAGG
14081687 ATATTTGGGT
Statistics
Matches: 72, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 72 1.00
ACGTcount: A:0.41, C:0.07, G:0.22, T:0.30
Consensus pattern (54 bp):
GTAAAATAGTAATTTTGTAAATCGAGGGTAAAACAGTAATTCTATAAATCGAGG
Found at i:14083481 original size:27 final size:27
Alignment explanation
Indices: 14083350--14083470 Score: 188
Period size: 27 Copynumber: 4.5 Consensus size: 27
14083340 ATTACCAAAG
**
14083350 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTATTT
* **
14083377 TACCCTTGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTATTT
14083404 TACCCTCGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
*
14083431 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTATTT
14083458 TACCCTCGATTTA
1 TACCCTCGATTTA
14083471 CCAAATTACT
Statistics
Matches: 88, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 88 1.00
ACGTcount: A:0.27, C:0.20, G:0.09, T:0.44
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTATTT
Found at i:14083494 original size:81 final size:81
Alignment explanation
Indices: 14083305--14083515 Score: 201
Period size: 81 Copynumber: 2.6 Consensus size: 81
14083295 AATACTTTAG
* * *
14083305 TTTACCAAATTACTGAAATACCCTCAAATTGTAAAATTACCAAAGTACCCTCGATTTATAGAATT
1 TTTACCAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTATAGAATT
* *
14083370 ACCGTTTTACCCTTGA
66 ACCATTTTACCCTCGA
* * *** * * *** *
14083386 TTTA-TAGAATTACCGTTTTACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTATAGAAT
1 TTTACCA-AATTACTGAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTATAGAAT
*
14083450 TACTATTTTACCCTCGA
65 TACCATTTTACCCTCGA
* * * *
14083467 TTTACCAAATTACTAAAATACCATCGA-TCAGTAAAATTACCAAAATACC
1 TTTACCAAATTACTGAAATACCCTCGATTTA-TAAAATTACCAAAGTACC
14083516 ACTGGTTTGT
Statistics
Matches: 97, Mismatches: 30, Indels: 6
0.73 0.23 0.05
Matches are distributed among these distances:
80 3 0.03
81 93 0.96
82 1 0.01
ACGTcount: A:0.36, C:0.21, G:0.08, T:0.36
Consensus pattern (81 bp):
TTTACCAAATTACTGAAATACCCTCGATTTATAAAATTACCAAAGTACCCTCGATTTATAGAATT
ACCATTTTACCCTCGA
Found at i:14083559 original size:81 final size:81
Alignment explanation
Indices: 14083473--14083623 Score: 189
Period size: 81 Copynumber: 1.9 Consensus size: 81
14083463 TCGATTTACC
* ** *
14083473 AAATTA-CTAAAATACCATCGATCAGTAAAATTACCAAAATACCACTGGTTTGTAAAATTACCA-
1 AAATTATC-AAAATACCATCAATCAGTAAAATTACCAAAATACCACTAATTTGCAAAATTA-CAT
14083536 AAATACCACTGGTTTGTG
64 AAATACCACTGGTTTGTG
* * ** *
14083554 AAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTAATTTGCAAAATTACATAA
1 AAATTATCAAAATACCATCAATCAGTAAAATTACCAAAATACCACTAATTTGCAAAATTACATAA
14083619 ATACC
66 ATACC
14083624 CTTGACTTTC
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
80 2 0.03
81 56 0.95
82 1 0.02
ACGTcount: A:0.44, C:0.20, G:0.08, T:0.28
Consensus pattern (81 bp):
AAATTATCAAAATACCATCAATCAGTAAAATTACCAAAATACCACTAATTTGCAAAATTACATAA
ATACCACTGGTTTGTG
Found at i:14083597 original size:27 final size:27
Alignment explanation
Indices: 14083311--14083625 Score: 152
Period size: 27 Copynumber: 11.7 Consensus size: 27
14083301 TTAGTTTACC
** * *
14083311 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
14083338 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** * *
14083365 GAATTACCGTTTTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* **** *
14083392 GAATTACCGTTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *** * *
14083419 GAATTACTATTTTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* * *** ***
14083446 GAATTACTATTTTACCCTCGATTTACC
1 AAATTACCAAAATACCCTCGATTTGTA
* * **
14083473 AAATTACTAAAATACCATCGATCAGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
14083500 AAATTACCAAAATACCACT-GGTTTGTA
1 AAATTACCAAAATACC-CTCGATTTGTA
* *
14083527 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTGTA
* * *
14083554 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
14083581 AAATTACCAAAATACCC-CTAATTTGCA
1 AAATTACCAAAATACCCTC-GATTTGTA
14083608 AAATTA-CATAAATACCCT
1 AAATTACCA-AAATACCCT
14083626 TGACTTTCTA
Statistics
Matches: 240, Mismatches: 43, Indels: 9
0.82 0.15 0.03
Matches are distributed among these distances:
26 5 0.02
27 234 0.98
28 1 0.00
ACGTcount: A:0.37, C:0.20, G:0.08, T:0.34
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:14083771 original size:27 final size:27
Alignment explanation
Indices: 14083728--14083801 Score: 80
Period size: 27 Copynumber: 2.7 Consensus size: 27
14083718 AAATTACTAA
*
14083728 AATACCCCTAATA-GGTAAAAAGACCGT
1 AATACCCCT-GTAGGGTAAAAAGACCGT
**
14083755 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTAGGGTAAAAAGACCGT
*
14083782 AATACCCCTGTATGGTAAAA
1 AATACCCCTGTAGGGTAAAA
14083802 TGGCGAATAT
Statistics
Matches: 39, Mismatches: 5, Indels: 6
0.78 0.10 0.12
Matches are distributed among these distances:
26 3 0.08
27 35 0.90
28 1 0.03
ACGTcount: A:0.38, C:0.22, G:0.20, T:0.20
Consensus pattern (27 bp):
AATACCCCTGTAGGGTAAAAAGACCGT
Found at i:14084992 original size:25 final size:25
Alignment explanation
Indices: 14084963--14085010 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14084953 TTATAATATG
* * *
14084963 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
14084988 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
14085011 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:14085097 original size:20 final size:20
Alignment explanation
Indices: 14085047--14085097 Score: 75
Period size: 20 Copynumber: 2.5 Consensus size: 20
14085037 ATTTTGATAA
*
14085047 ACATGAAATGGATGATATGC
1 ACATGAAATGTATGATATGC
*
14085067 ACATGACATGTATGATATGC
1 ACATGAAATGTATGATATGC
*
14085087 ACATGAGATGT
1 ACATGAAATGT
14085098 TCATAAATGC
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 28 1.00
ACGTcount: A:0.37, C:0.12, G:0.24, T:0.27
Consensus pattern (20 bp):
ACATGAAATGTATGATATGC
Found at i:14085174 original size:23 final size:23
Alignment explanation
Indices: 14085144--14085261 Score: 200
Period size: 23 Copynumber: 5.1 Consensus size: 23
14085134 AGGAAGTGCG
14085144 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
14085167 AAAGGGCTTATGCCCTAGTCATT
1 AAAGGGCTTATGCCCCAGTTATT
*
14085190 AAAGGGCTTATGCCCCAGTCATT
1 AAAGGGCTTATGCCCCAGTTATT
14085213 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
14085236 AAAGGGCTTTTGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
14085259 AAA
1 AAA
14085262 ATAGGCTAGG
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 90 1.00
ACGTcount: A:0.27, C:0.22, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:14085539 original size:31 final size:31
Alignment explanation
Indices: 14085476--14085539 Score: 74
Period size: 31 Copynumber: 2.1 Consensus size: 31
14085466 CGTTTACAGT
* * * *
14085476 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTCCGGCCCAATAATATAAAATATGA
**
14085507 AAAGGCTCCGGCCCAATGTTATAAAATATGA
1 AAAGGCTCCGGCCCAATAATATAAAATATGA
14085538 AA
1 AA
14085540 TATGAAATGG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
31 27 1.00
ACGTcount: A:0.39, C:0.17, G:0.20, T:0.23
Consensus pattern (31 bp):
AAAGGCTCCGGCCCAATAATATAAAATATGA
Found at i:14094657 original size:40 final size:40
Alignment explanation
Indices: 14094612--14095772 Score: 2110
Period size: 40 Copynumber: 29.1 Consensus size: 40
14094602 CGAATACACG
* * * *
14094612 TCACCAGCATGATTGCTCTTCGGGACCTAGCCCGGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* * * * * *
14094652 ACACCAGCACGAATGCTCTTCGAGG-TTTAGCACGGATATA
1 TCACTAGCATGAATGCTCTTCG-GGACTTAGCCCGGATACA
* * *
14094692 TTACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
14094732 TCACTAGCATGAATGCTCTTCGGGACTTAGTCCGGTTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14094772 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14094812 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14094852 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14094892 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14094932 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14094972 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095012 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095052 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095092 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095132 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095172 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095212 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095252 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095292 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095332 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095372 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095412 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095452 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095492 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095532 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095572 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095612 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095652 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
14095692 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGGTACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
* *
14095732 TCACTAGCACGAATGCTCTTCGGGACTTAGCCTGGAT-CA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
14095771 TC
1 TC
14095773 GTCGAGACCT
Statistics
Matches: 1092, Mismatches: 27, Indels: 5
0.97 0.02 0.00
Matches are distributed among these distances:
39 5 0.00
40 1085 0.99
41 2 0.00
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:14101061 original size:54 final size:54
Alignment explanation
Indices: 14101003--14101117 Score: 140
Period size: 54 Copynumber: 2.1 Consensus size: 54
14100993 ATTACTGAAA
*
14101003 TACCCTCAAATTGTAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTT
* * * **** * *
14101057 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTT
14101111 TACCCTC
1 TACCCTC
14101118 GATTTACAGA
Statistics
Matches: 51, Mismatches: 10, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
54 51 1.00
ACGTcount: A:0.30, C:0.23, G:0.09, T:0.37
Consensus pattern (54 bp):
TACCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTATAGAATTACCGTTT
Found at i:14101151 original size:27 final size:27
Alignment explanation
Indices: 14101030--14101150 Score: 197
Period size: 27 Copynumber: 4.5 Consensus size: 27
14101020 ATTACCAAAG
* *
14101030 TACCCTCAATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
*
14101057 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
14101084 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTATAGAATTACTGTTT
* *
14101111 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAGAATTACTGTTT
14101138 TACCCTCGATTTA
1 TACCCTCGATTTA
14101151 CCAAATTACT
Statistics
Matches: 90, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
27 90 1.00
ACGTcount: A:0.27, C:0.22, G:0.09, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTATAGAATTACTGTTT
Found at i:14101168 original size:27 final size:27
Alignment explanation
Indices: 14101057--14101171 Score: 88
Period size: 27 Copynumber: 4.3 Consensus size: 27
14101047 ATTACCGTTT
* *****
14101057 TACCCTCGATTTATAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACTAAAA
* ****
14101084 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACTAAAA
***
14101111 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACTAAAA
14101138 TACCCTCGATTTACCA-AATTACTAAAA
1 TACCCTCGATTTA-CAGAATTACTAAAA
14101165 TACCCTC
1 TACCCTC
14101172 AATCAGTAAA
Statistics
Matches: 81, Mismatches: 6, Indels: 2
0.91 0.07 0.02
Matches are distributed among these distances:
27 79 0.98
28 2 0.02
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACTAAAA
Found at i:14101169 original size:54 final size:54
Alignment explanation
Indices: 14101057--14101171 Score: 142
Period size: 54 Copynumber: 2.1 Consensus size: 54
14101047 ATTACCGTTT
* * * ****
14101057 TACCCTCGATTTATAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTAAAA
*
14101111 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACCA-AATTACTAAAA
1 TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTA-CAGAATTACTAAAA
14101165 TACCCTC
1 TACCCTC
14101172 AATCAGTAAA
Statistics
Matches: 52, Mismatches: 8, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
54 51 0.98
55 1 0.02
ACGTcount: A:0.30, C:0.24, G:0.08, T:0.38
Consensus pattern (54 bp):
TACCCTCGATTTACAGAATTACCATTTTACCCTCGATTTACAGAATTACTAAAA
Found at i:14101169 original size:81 final size:81
Alignment explanation
Indices: 14100985--14101195 Score: 201
Period size: 81 Copynumber: 2.6 Consensus size: 81
14100975 AATACTTTAG
* *
14100985 TTTACCAAATTACTGAAATACCCTCAAATTGTAAAATTACCAAAGTACCCTCAATTTATAGAATT
1 TTTACCAAATTACTGAAATACCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTACAGAATT
*
14101050 ACCGTTTTACCCTCGA
66 ACCATTTTACCCTCGA
* * *** * * * ***** *
14101066 TTTA-TAGAATTACCGTTTTACCCTCGATTTATAGAATTACTGTTTTACCCTCGATTTACAGAAT
1 TTTACCA-AATTACTGAAATACCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTACAGAAT
*
14101130 TACTATTTTACCCTCGA
65 TACCATTTTACCCTCGA
* * *
14101147 TTTACCAAATTACTAAAATACCCTC-AATCAGTAAAATTACCAAAATACC
1 TTTACCAAATTACTGAAATACCCTCAAATTA-TAAAATTACCAAAGTACC
14101196 ACTAGTTTGT
Statistics
Matches: 95, Mismatches: 32, Indels: 6
0.71 0.24 0.05
Matches are distributed among these distances:
80 4 0.04
81 90 0.95
82 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.07, T:0.35
Consensus pattern (81 bp):
TTTACCAAATTACTGAAATACCCTCAAATTATAAAATTACCAAAGTACCCTCAATTTACAGAATT
ACCATTTTACCCTCGA
Found at i:14101238 original size:81 final size:81
Alignment explanation
Indices: 14101153--14101303 Score: 209
Period size: 81 Copynumber: 1.9 Consensus size: 81
14101143 TCGATTTACC
*
14101153 AAATTA-CTAAAATACCCTCAATCAGTAAAATTACCAAAATACCACT-AGTTTGTAAAATTACCA
1 AAATTATC-AAAATACCCTCAATCAGTAAAATTACCAAAATACCACTGA-TTTGCAAAATTA-CA
14101216 -AAATACCACTGGTTTGTG
63 TAAATACCACTGGTTTGTG
* ** *
14101234 AAATTATCGAAATACCCTCAATTTGTAAAATTACCAAAATACCCCTGATTTGCAAAATTACATAA
1 AAATTATCAAAATACCCTCAATCAGTAAAATTACCAAAATACCACTGATTTGCAAAATTACATAA
14101299 ATACC
66 ATACC
14101304 CTTGACTTTC
Statistics
Matches: 62, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
80 2 0.03
81 58 0.94
82 2 0.03
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (81 bp):
AAATTATCAAAATACCCTCAATCAGTAAAATTACCAAAATACCACTGATTTGCAAAATTACATAA
ATACCACTGGTTTGTG
Found at i:14101277 original size:27 final size:27
Alignment explanation
Indices: 14101153--14101305 Score: 143
Period size: 27 Copynumber: 5.7 Consensus size: 27
14101143 TCGATTTACC
* **
14101153 AAATTACTAAAATACCCTCAATCAGTA
1 AAATTACCAAAATACCCTCAATTTGTA
*
14101180 AAATTACCAAAATACCACT-AGTTTGTA
1 AAATTACCAAAATACC-CTCAATTTGTA
** *
14101207 AAATTACCAAAATACCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCAATTTGTA
* *
14101234 AAATTATCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCAATTTGTA
* *
14101261 AAATTACCAAAATACCC-CTGATTTGCA
1 AAATTACCAAAATACCCTC-AATTTGTA
14101288 AAATTA-CATAAATACCCT
1 AAATTACCA-AAATACCCT
14101306 TGACTTTCTA
Statistics
Matches: 106, Mismatches: 15, Indels: 9
0.82 0.12 0.07
Matches are distributed among these distances:
26 5 0.05
27 99 0.93
28 2 0.02
ACGTcount: A:0.43, C:0.21, G:0.07, T:0.29
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCAATTTGTA
Found at i:14101485 original size:27 final size:27
Alignment explanation
Indices: 14101408--14101485 Score: 88
Period size: 27 Copynumber: 2.9 Consensus size: 27
14101398 AAATGACTAA
* *
14101408 AATACCCCT-AATAGGTAAAAAGACCGT
1 AATACCCCTGTAT-GGTAAAATGACCGT
* *
14101435 AA-AGCCCCTGTAGGGTAAAGTGACCGT
1 AATA-CCCCTGTATGGTAAAATGACCGT
14101462 AATACCCCTGTATGGTAAAATGAC
1 AATACCCCTGTATGGTAAAATGAC
14101486 GAATATGCCC
Statistics
Matches: 42, Mismatches: 6, Indels: 6
0.78 0.11 0.11
Matches are distributed among these distances:
26 1 0.02
27 39 0.93
28 2 0.05
ACGTcount: A:0.37, C:0.22, G:0.21, T:0.21
Consensus pattern (27 bp):
AATACCCCTGTATGGTAAAATGACCGT
Found at i:14102671 original size:25 final size:25
Alignment explanation
Indices: 14102642--14102689 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
14102632 TTATAATATG
* * *
14102642 AAAATGACCGTTTTGCCCCTAGGTA
1 AAAATGACCATTATACCCCTAGGTA
14102667 AAAATGACCATTATACCCCTAGG
1 AAAATGACCATTATACCCCTAGG
14102690 GTTTATATAT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.33, C:0.25, G:0.17, T:0.25
Consensus pattern (25 bp):
AAAATGACCATTATACCCCTAGGTA
Found at i:14102740 original size:9 final size:9
Alignment explanation
Indices: 14102728--14102784 Score: 51
Period size: 9 Copynumber: 5.9 Consensus size: 9
14102718 TTTGATAAAC
14102728 ATGATATGT
1 ATGATATGT
*
14102737 ATGATATGCAC
1 ATGATATG--T
*
14102748 ATGACATGT
1 ATGATATGT
*
14102757 ATGATATGCAC
1 ATGATATG--T
14102768 ATGATATGT
1 ATGATATGT
14102777 ATGATATG
1 ATGATATG
14102785 CACATGAGAT
Statistics
Matches: 38, Mismatches: 6, Indels: 8
0.73 0.12 0.15
Matches are distributed among these distances:
9 23 0.61
11 15 0.39
ACGTcount: A:0.35, C:0.09, G:0.21, T:0.35
Consensus pattern (9 bp):
ATGATATGT
Found at i:14102751 original size:20 final size:20
Alignment explanation
Indices: 14102726--14102796 Score: 124
Period size: 20 Copynumber: 3.5 Consensus size: 20
14102716 ATTTTGATAA
14102726 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
14102746 ACATGACATGTATGATATGC
1 ACATGATATGTATGATATGC
14102766 ACATGATATGTATGATATGC
1 ACATGATATGTATGATATGC
*
14102786 ACATGAGATGT
1 ACATGATATGT
14102797 TCATAAATGC
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 48 1.00
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.32
Consensus pattern (20 bp):
ACATGATATGTATGATATGC
Found at i:14102773 original size:11 final size:11
Alignment explanation
Indices: 14102737--14102791 Score: 55
Period size: 11 Copynumber: 5.4 Consensus size: 11
14102727 CATGATATGT
14102737 ATGATATGCAC
1 ATGATATGCAC
* *
14102748 ATGACATG--T
1 ATGATATGCAC
14102757 ATGATATGCAC
1 ATGATATGCAC
*
14102768 ATGATATG--T
1 ATGATATGCAC
14102777 ATGATATGCAC
1 ATGATATGCAC
14102788 ATGA
1 ATGA
14102792 GATGTTCATA
Statistics
Matches: 34, Mismatches: 6, Indels: 8
0.71 0.12 0.17
Matches are distributed among these distances:
9 15 0.44
11 19 0.56
ACGTcount: A:0.36, C:0.13, G:0.20, T:0.31
Consensus pattern (11 bp):
ATGATATGCAC
Found at i:14102876 original size:23 final size:23
Alignment explanation
Indices: 14102843--14103030 Score: 322
Period size: 23 Copynumber: 8.1 Consensus size: 23
14102833 AGGAAGTGCG
14102843 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
* *
14102866 AAAGGGTTTATGCCCTAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
14102889 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
14102912 AAAGGGCTTATGCCCCAGTCATT
1 AAAGGGCTTATGCCCCAGTTATT
*
14102935 AAAGGGCTTATGCCCCAGTCATT
1 AAAGGGCTTATGCCCCAGTTATT
14102958 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
14102981 AAAGGGCTTATGCCCCAGTTATT
1 AAAGGGCTTATGCCCCAGTTATT
*
14103004 AAAAGGGCTTTTGCCCCAGTTATT
1 -AAAGGGCTTATGCCCCAGTTATT
14103028 AAA
1 AAA
14103031 AGAGGCTAGG
Statistics
Matches: 157, Mismatches: 7, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
23 135 0.86
24 22 0.14
ACGTcount: A:0.27, C:0.21, G:0.21, T:0.30
Consensus pattern (23 bp):
AAAGGGCTTATGCCCCAGTTATT
Found at i:14103308 original size:31 final size:31
Alignment explanation
Indices: 14103245--14103308 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
14103235 CGTTTACAGT
* *
14103245 AAAGGCTTCGGCCCAGTAATATGAAATTTGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
**
14103276 AAAGGCTTCGGCCCAGTGTTATAAAATATGA
1 AAAGGCTTCGGCCCAGTAATATAAAATATGA
14103307 AA
1 AA
14103309 TATGAAATGG
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.38, C:0.16, G:0.22, T:0.25
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTAATATAAAATATGA
Found at i:14110802 original size:40 final size:40
Alignment explanation
Indices: 14110650--14110795 Score: 197
Period size: 40 Copynumber: 3.7 Consensus size: 40
14110640 TACCAGCTCG
* * * * *
14110650 TAGCCTGCAGGTCTCT-AGCCCGGATAGCATTCTAGCACGA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCA-TA
* *
14110690 -AACCTGCGGGTCTTTAAGCCCGAATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
14110729 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
*
14110769 TAGCCTGCGAGTCTTTAAGCCCGGATA
1 TAGCCTGCGGGTCTTTAAGCCCGGATA
14110796 CAATTCCTCA
Statistics
Matches: 94, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
39 13 0.14
40 81 0.86
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.24
Consensus pattern (40 bp):
TAGCCTGCGGGTCTTTAAGCCCGGATAACATTCCAGCATA
Found at i:14119658 original size:21 final size:20
Alignment explanation
Indices: 14119634--14119700 Score: 55
Period size: 21 Copynumber: 3.3 Consensus size: 20
14119624 TTTTTGAACA
14119634 TTTGTTCTTTACTTTTCATAT
1 TTTGTTCTTTACTTTTCAT-T
** *
14119655 TTTGTAGTTTAGATTTTCATT
1 TTTGTTCTTTA-CTTTTCATT
* **
14119676 TTT-TTCTTTCCTTTTTGTT
1 TTTGTTCTTTACTTTTCATT
14119695 TTTGTT
1 TTTGTT
14119701 GTTGTATTTT
Statistics
Matches: 35, Mismatches: 9, Indels: 5
0.71 0.18 0.10
Matches are distributed among these distances:
19 9 0.26
20 6 0.17
21 13 0.37
22 7 0.20
ACGTcount: A:0.10, C:0.10, G:0.09, T:0.70
Consensus pattern (20 bp):
TTTGTTCTTTACTTTTCATT
Found at i:14125078 original size:43 final size:43
Alignment explanation
Indices: 14124937--14125048 Score: 224
Period size: 43 Copynumber: 2.6 Consensus size: 43
14124927 TGATTACACA
14124937 TAAGACCATGTCTGGGACATTGGCATTGTATTGTTATTACGTG
1 TAAGACCATGTCTGGGACATTGGCATTGTATTGTTATTACGTG
14124980 TAAGACCATGTCTGGGACATTGGCATTGTATTGTTATTACGTG
1 TAAGACCATGTCTGGGACATTGGCATTGTATTGTTATTACGTG
14125023 TAAGACCATGTCTGGGACATTGGCAT
1 TAAGACCATGTCTGGGACATTGGCAT
14125049 CATTATTTGA
Statistics
Matches: 69, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
43 69 1.00
ACGTcount: A:0.24, C:0.15, G:0.26, T:0.35
Consensus pattern (43 bp):
TAAGACCATGTCTGGGACATTGGCATTGTATTGTTATTACGTG
Found at i:14125111 original size:86 final size:86
Alignment explanation
Indices: 14124937--14125113 Score: 191
Period size: 86 Copynumber: 2.1 Consensus size: 86
14124927 TGATTACACA
* * *
14124937 TAAGACCATGTCTGGGACATTGGCATTGTATTGTTATTACGTGTAAGACCATGTCTGGGACATTG
1 TAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTATAAGACCATGTCTAGGACATTG
* * * *
14125002 GCATTGTATTGTTATTACGTG
66 GCATCGTATTGTGATAACATG
* * * *
14125023 TAAGACCATGTCTGGGACATTGGCATCAT-TATT-TGATTTCGTATTAGACCCTGTCTAGGATAG
1 TAAGACCATGTCTGGGACATTGGCAT--TGTATTGTGATTACGTATAAGACCATGTCTAGGACA-
14125086 TT-GCATCG-ATATGTGATAACATG
63 TTGGCATCGTAT-TGTGATAACATG
14125109 TAAGA
1 TAAGA
14125114 TCATATCCGA
Statistics
Matches: 76, Mismatches: 11, Indels: 8
0.80 0.12 0.08
Matches are distributed among these distances:
85 2 0.03
86 67 0.88
87 6 0.08
88 1 0.01
ACGTcount: A:0.26, C:0.15, G:0.24, T:0.36
Consensus pattern (86 bp):
TAAGACCATGTCTGGGACATTGGCATTGTATTGTGATTACGTATAAGACCATGTCTAGGACATTG
GCATCGTATTGTGATAACATG
Found at i:14125542 original size:60 final size:60
Alignment explanation
Indices: 14125445--14125563 Score: 166
Period size: 60 Copynumber: 2.0 Consensus size: 60
14125435 TGTTTTATAG
* * ** *
14125445 ATTATCGAAGCTAGCTCAGACTCGGGGATCATTGGGAAAACGTCATCACGCTATCGATCC
1 ATTATCGAAGCTAGATCAGACTCGGGGATCATCGGGAAAACACCATCACACTATCGATCC
* * *
14125505 ATTATCGAAGCTAGATCGGACTCGGGGATCGTCGGGAAAACACCATCACACTATGGATC
1 ATTATCGAAGCTAGATCAGACTCGGGGATCATCGGGAAAACACCATCACACTATCGATC
14125564 ATCTTGTTGG
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
60 51 1.00
ACGTcount: A:0.29, C:0.24, G:0.24, T:0.22
Consensus pattern (60 bp):
ATTATCGAAGCTAGATCAGACTCGGGGATCATCGGGAAAACACCATCACACTATCGATCC
Done.