Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 40 of 297
Found at i:14131788 original size:86 final size:86
Alignment explanation
Indices: 14131643--14131814 Score: 344
Period size: 86 Copynumber: 2.0 Consensus size: 86
14131633 TGAACCCTAG
14131643 CTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCCAAAAATGTAAAGAACTTGAA
1 CTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCCAAAAATGTAAAGAACTTGAA
14131708 AAACGGGGTTAGAATGGACTT
66 AAACGGGGTTAGAATGGACTT
14131729 CTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCCAAAAATGTAAAGAACTTGAA
1 CTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCCAAAAATGTAAAGAACTTGAA
14131794 AAACGGGGTTAGAATGGACTT
66 AAACGGGGTTAGAATGGACTT
14131815 ACTATTGAGC
Statistics
Matches: 86, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
86 86 1.00
ACGTcount: A:0.41, C:0.13, G:0.19, T:0.28
Consensus pattern (86 bp):
CTTAAATTATTGCTAGAATAAGCTTAATCAAATTACCGGGATTCCAAAAATGTAAAGAACTTGAA
AAACGGGGTTAGAATGGACTT
Found at i:14137312 original size:26 final size:27
Alignment explanation
Indices: 14137283--14137342 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
14137273 CCACATATAT
*
14137283 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
14137309 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
14137336 ATATCTG
1 ATATCTG
14137343 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:14138105 original size:70 final size:70
Alignment explanation
Indices: 14137992--14138130 Score: 235
Period size: 70 Copynumber: 2.0 Consensus size: 70
14137982 CAACGAATGC
* *
14137992 ATACTAAGTCGTAAGTCCATGTGACACGTCAGATCTGGTCATAACGTCTTGGCCGGGTTTG-GAG
1 ATACTAAGTCGTAAGTCCATGTGACACGTCAGATCTGGCCATAACGTCTGGGCCGGGTTTGCG-G
14138056 TGTTAT
65 TGTTAT
*
14138062 ATACTAAGTTGTAAGTCCATGTGACACGTCAGATCTGGCCATAACGTCTGGGCCGGGTTTGCGGT
1 ATACTAAGTCGTAAGTCCATGTGACACGTCAGATCTGGCCATAACGTCTGGGCCGGGTTTGCGGT
14138127 GTTA
66 GTTA
14138131 CATTTAGTGG
Statistics
Matches: 65, Mismatches: 3, Indels: 2
0.93 0.04 0.03
Matches are distributed among these distances:
70 64 0.98
71 1 0.02
ACGTcount: A:0.22, C:0.19, G:0.28, T:0.30
Consensus pattern (70 bp):
ATACTAAGTCGTAAGTCCATGTGACACGTCAGATCTGGCCATAACGTCTGGGCCGGGTTTGCGGT
GTTAT
Found at i:14144828 original size:27 final size:26
Alignment explanation
Indices: 14144786--14144845 Score: 84
Period size: 27 Copynumber: 2.3 Consensus size: 26
14144776 CCACATATAT
14144786 ATATCTGTTCTGGTGGCCTAGCCACA
1 ATATCTGTTCTGGTGGCCTAGCCACA
* * *
14144812 ATATCTGTATCTGGTGGCTTCGTCACA
1 ATATCTGT-TCTGGTGGCCTAGCCACA
14144839 ATATCTG
1 ATATCTG
14144846 GCAGCCTAGC
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
26 8 0.27
27 22 0.73
ACGTcount: A:0.20, C:0.23, G:0.22, T:0.35
Consensus pattern (26 bp):
ATATCTGTTCTGGTGGCCTAGCCACA
Found at i:14145680 original size:41 final size:40
Alignment explanation
Indices: 14145625--14145875 Score: 220
Period size: 41 Copynumber: 6.1 Consensus size: 40
14145615 GCAAAAATTG
* * * *
14145625 TAAAACACGGAGCAATAGCGGCGTTTTACAAAAAAACGCCAC
1 TAAAA-ACAGAGCAATAGCGGCGTTTT-CGATAAAACGCCGC
*
14145667 TAAAAACAGAGCAATAGCGGCGCTTTT-GGTAAAACGCCGC
1 TAAAAACAGAGCAATAGCGGCG-TTTTCGATAAAACGCCGC
* *
14145707 TAAAAACTAGAGCATTAGCGGCGCTTTCGATAAAACGCCGC
1 TAAAAAC-AGAGCAATAGCGGCGTTTTCGATAAAACGCCGC
* * *
14145748 TAAAAACCAGAGCATTAGCGGCGCTTTCGATAAAATGCCGC
1 TAAAAA-CAGAGCAATAGCGGCGTTTTCGATAAAACGCCGC
* * * * * *
14145789 TAAAAACCATAGCATTAGCGGTGCTTTCCG-TAAAACGCAGA
1 TAAAAA-CAGAGCAATAGCGGCG-TTTTCGATAAAACGCCGC
* * * *
14145830 TAAAAACCAAAGCATTAGCGGCGCTTTCTG-TAAAACGCTGC
1 TAAAAA-CAGAGCAATAGCGGCGTTTTC-GATAAAACGCCGC
14145871 TAAAA
1 TAAAA
14145876 GTCATATAAC
Statistics
Matches: 181, Mismatches: 22, Indels: 13
0.84 0.10 0.06
Matches are distributed among these distances:
40 22 0.12
41 145 0.80
42 14 0.08
ACGTcount: A:0.37, C:0.23, G:0.21, T:0.19
Consensus pattern (40 bp):
TAAAAACAGAGCAATAGCGGCGTTTTCGATAAAACGCCGC
Found at i:14145767 original size:82 final size:83
Alignment explanation
Indices: 14145634--14145875 Score: 294
Period size: 82 Copynumber: 3.0 Consensus size: 83
14145624 GTAAAACACG
* * * * * *
14145634 GAGCAATAGCGGCGTTTTACAAAAAAACGCCACTAAAAA-CAGAGCAATAGCGGCGCTTTTGGTA
1 GAGCATTAGCGGCGCTTTACGATAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTA
*
14145698 AAACGCCGCTAAAAACTA
66 AAACGCCGCTAAAAACCA
* *
14145716 GAGCATTAGCGGCGCTTT-CGATAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTCGATA
1 GAGCATTAGCGGCGCTTTACGATAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTA
*
14145780 AAATGCCGCTAAAAACCA
66 AAACGCCGCTAAAAACCA
* * * * * *
14145798 TAGCATTAGCGGTGCTTTCCG-TAAAACGCAGATAAAAACCAAAGCATTAGCGGCGCTTTCT-GT
1 GAGCATTAGCGGCGCTTTACGATAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTT-TGGT
*
14145861 AAAACGCTGCTAAAA
65 AAAACGCCGCTAAAA
14145876 GTCATATAAC
Statistics
Matches: 138, Mismatches: 19, Indels: 6
0.85 0.12 0.04
Matches are distributed among these distances:
81 17 0.12
82 119 0.86
83 2 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (83 bp):
GAGCATTAGCGGCGCTTTACGATAAAACGCCGCTAAAAACCAGAGCATTAGCGGCGCTTTTGGTA
AAACGCCGCTAAAAACCA
Found at i:14145844 original size:123 final size:123
Alignment explanation
Indices: 14145634--14145875 Score: 308
Period size: 123 Copynumber: 2.0 Consensus size: 123
14145624 GTAAAACACG
* **
14145634 GAGCAATAGCGGCGTTTTACAAAAAAACGCCACTAAAAACAGAGCAATAGCGGCGCTTTTGGTAA
1 GAGCAATAGCGGCGCTTTACAAAAAAACGCCACTAAAAACAGAGCAATAGCGGCGCTTTCCGTAA
* * * *
14145699 AACGCCGCTAAAAACTAGAGCATTAGCGGCGCTTTC-GATAAAACGCCGCTAAAAACCA
66 AACGCAGATAAAAACCAAAGCATTAGCGGCGCTTTCTG-TAAAACGCCGCTAAAAACCA
* * * * * * * *
14145757 GAGCATTAGCGGCGCTTT-CGATAAAATGCCGCTAAAAACCATAGCATTAGCGGTGCTTTCCGTA
1 GAGCAATAGCGGCGCTTTACAAAAAAACGCCACTAAAAA-CAGAGCAATAGCGGCGCTTTCCGTA
*
14145821 AAACGCAGATAAAAACCAAAGCATTAGCGGCGCTTTCTGTAAAACGCTGCTAAAA
65 AAACGCAGATAAAAACCAAAGCATTAGCGGCGCTTTCTGTAAAACGCCGCTAAAA
14145876 GTCATATAAC
Statistics
Matches: 101, Mismatches: 16, Indels: 4
0.83 0.13 0.03
Matches are distributed among these distances:
122 16 0.16
123 84 0.83
124 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.21, T:0.19
Consensus pattern (123 bp):
GAGCAATAGCGGCGCTTTACAAAAAAACGCCACTAAAAACAGAGCAATAGCGGCGCTTTCCGTAA
AACGCAGATAAAAACCAAAGCATTAGCGGCGCTTTCTGTAAAACGCCGCTAAAAACCA
Found at i:14146232 original size:21 final size:21
Alignment explanation
Indices: 14146206--14146249 Score: 54
Period size: 21 Copynumber: 2.1 Consensus size: 21
14146196 TAGGAATTAT
*
14146206 GGTTTAAGTGTT-GGGGTTTAA
1 GGTTTAAGGGTTAGGGG-TTAA
*
14146227 GGTTTAGGGGTTAGGGGTTAA
1 GGTTTAAGGGTTAGGGGTTAA
14146248 GG
1 GG
14146250 GTCTATGATT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.80
22 4 0.20
ACGTcount: A:0.18, C:0.00, G:0.45, T:0.36
Consensus pattern (21 bp):
GGTTTAAGGGTTAGGGGTTAA
Found at i:14146283 original size:50 final size:49
Alignment explanation
Indices: 14146221--14146318 Score: 117
Period size: 50 Copynumber: 2.0 Consensus size: 49
14146211 AAGTGTTGGG
* *
14146221 GTTTAAGGTTTAGGGGTTAGGGGTTAAGGGTCT-ATGATTAAGAGTTTAT
1 GTTTAAGGTTTAGGGGTTAGGGGTTAAGGAT-TAAGGATTAAGAGTTTAT
* * * *
14146270 GTTTTAGGATTTAGGGTTTATGGTTTAAGGATTAAGGATTAAGAGTTTA
1 GTTTAAGG-TTTAGGGGTTAGGGGTTAAGGATTAAGGATTAAGAGTTTA
14146319 GGGTTTAGTT
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
49 8 0.20
50 33 0.80
ACGTcount: A:0.27, C:0.01, G:0.32, T:0.41
Consensus pattern (49 bp):
GTTTAAGGTTTAGGGGTTAGGGGTTAAGGATTAAGGATTAAGAGTTTAT
Found at i:14146477 original size:22 final size:22
Alignment explanation
Indices: 14146448--14146509 Score: 58
Period size: 22 Copynumber: 2.9 Consensus size: 22
14146438 ACTTAGGGTA
14146448 TATG-GTTAAAGGTTTAAGGTT
1 TATGAGTTAAAGGTTTAAGGTT
* *
14146469 TATGAGTTACTA-TTTTAAGGTT
1 TATGAGTTA-AAGGTTTAAGGTT
* *
14146491 TATGAATT-ATGGTTTAAGG
1 TATGAGTTAAAGGTTTAAGG
14146510 GTTGAGGTTT
Statistics
Matches: 32, Mismatches: 6, Indels: 6
0.73 0.14 0.14
Matches are distributed among these distances:
21 11 0.34
22 20 0.62
23 1 0.03
ACGTcount: A:0.29, C:0.02, G:0.24, T:0.45
Consensus pattern (22 bp):
TATGAGTTAAAGGTTTAAGGTT
Found at i:14146512 original size:22 final size:22
Alignment explanation
Indices: 14146458--14146509 Score: 70
Period size: 22 Copynumber: 2.4 Consensus size: 22
14146448 TATGGTTAAA
*
14146458 GGTTTAAGGTTTATGAGTTACT
1 GGTTTAAGGTTTATGAATTACT
**
14146480 ATTTTAAGGTTTATGAATTA-T
1 GGTTTAAGGTTTATGAATTACT
14146501 GGTTTAAGG
1 GGTTTAAGG
14146510 GTTGAGGTTT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
21 8 0.32
22 17 0.68
ACGTcount: A:0.27, C:0.02, G:0.25, T:0.46
Consensus pattern (22 bp):
GGTTTAAGGTTTATGAATTACT
Found at i:14146546 original size:7 final size:7
Alignment explanation
Indices: 14146536--14146561 Score: 52
Period size: 7 Copynumber: 3.7 Consensus size: 7
14146526 TAGGAGCTAG
14146536 GGGTTAT
1 GGGTTAT
14146543 GGGTTAT
1 GGGTTAT
14146550 GGGTTAT
1 GGGTTAT
14146557 GGGTT
1 GGGTT
14146562 CAGGGTTAAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 19 1.00
ACGTcount: A:0.12, C:0.00, G:0.46, T:0.42
Consensus pattern (7 bp):
GGGTTAT
Found at i:14147175 original size:21 final size:20
Alignment explanation
Indices: 14147137--14147179 Score: 50
Period size: 21 Copynumber: 2.1 Consensus size: 20
14147127 AGGGTAAAAT
* * *
14147137 TTTAGGGTTTATGTTTTATAA
1 TTTAGGGTTAAGGGTTTA-AA
14147158 TTTAGGGTTAAGGGTTTAAA
1 TTTAGGGTTAAGGGTTTAAA
14147178 TT
1 TT
14147180 AATACTTTTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.26, C:0.00, G:0.23, T:0.51
Consensus pattern (20 bp):
TTTAGGGTTAAGGGTTTAAA
Found at i:14147287 original size:19 final size:20
Alignment explanation
Indices: 14147240--14147287 Score: 82
Period size: 19 Copynumber: 2.5 Consensus size: 20
14147230 ATAGTAGATT
14147240 TAAA-AAAAACATTGATAAA
1 TAAATAAAAACATTGATAAA
14147259 TAAATAAAAACATTGAT-AA
1 TAAATAAAAACATTGATAAA
14147278 TAAATAAAAA
1 TAAATAAAAA
14147288 TAAAATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
19 16 0.57
20 12 0.43
ACGTcount: A:0.69, C:0.04, G:0.04, T:0.23
Consensus pattern (20 bp):
TAAATAAAAACATTGATAAA
Found at i:14147290 original size:6 final size:6
Alignment explanation
Indices: 14147274--14147307 Score: 50
Period size: 6 Copynumber: 5.3 Consensus size: 6
14147264 AAAAACATTG
14147274 ATAATAA ATAAAA ATAAAA TATAAAA ATAAAA AT
1 ATAA-AA ATAAAA ATAAAA -ATAAAA ATAAAA AT
14147308 GTATAAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
6 16 0.62
7 10 0.38
ACGTcount: A:0.76, C:0.00, G:0.00, T:0.24
Consensus pattern (6 bp):
ATAAAA
Found at i:14147297 original size:13 final size:13
Alignment explanation
Indices: 14147281--14147305 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
14147271 TTGATAATAA
14147281 ATAAAAATAAAAT
1 ATAAAAATAAAAT
14147294 ATAAAAATAAAA
1 ATAAAAATAAAA
14147306 ATGTATAAAA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20
Consensus pattern (13 bp):
ATAAAAATAAAAT
Found at i:14147317 original size:15 final size:14
Alignment explanation
Indices: 14147281--14147322 Score: 50
Period size: 15 Copynumber: 3.0 Consensus size: 14
14147271 TTGATAATAA
14147281 ATAAAAAT-AAAAT
1 ATAAAAATAAAAAT
14147294 ATAAAAATAAAAAT
1 ATAAAAATAAAAAT
* *
14147308 GTATAAAATAGAAAT
1 ATA-AAAATAAAAAT
14147323 TAGTGCAAAA
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
13 8 0.32
14 7 0.28
15 10 0.40
ACGTcount: A:0.71, C:0.00, G:0.05, T:0.24
Consensus pattern (14 bp):
ATAAAAATAAAAAT
Found at i:14150097 original size:13 final size:13
Alignment explanation
Indices: 14150053--14150097 Score: 63
Period size: 13 Copynumber: 3.5 Consensus size: 13
14150043 AGTTTATCTA
*
14150053 TAATATTTAAATT
1 TAATATTTAAAAT
*
14150066 TAAAATTTAAAAT
1 TAATATTTAAAAT
*
14150079 TTATATTTAAAAT
1 TAATATTTAAAAT
14150092 TAATAT
1 TAATAT
14150098 AATTTAATTC
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (13 bp):
TAATATTTAAAAT
Found at i:14150158 original size:22 final size:21
Alignment explanation
Indices: 14150119--14150159 Score: 55
Period size: 22 Copynumber: 1.9 Consensus size: 21
14150109 TTTACATAAT
*
14150119 ATTATTTAACTAATATATTTA
1 ATTATTTAACTAAAATATTTA
*
14150140 ATTATTTTAATTAAAATATT
1 ATTA-TTTAACTAAAATATT
14150160 GAAGTCAATT
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 4 0.24
22 13 0.76
ACGTcount: A:0.44, C:0.02, G:0.00, T:0.54
Consensus pattern (21 bp):
ATTATTTAACTAAAATATTTA
Found at i:14152945 original size:19 final size:21
Alignment explanation
Indices: 14152917--14152964 Score: 64
Period size: 20 Copynumber: 2.4 Consensus size: 21
14152907 TTATTATTTA
14152917 TTTTAGTTTTGATTCTAA-AT
1 TTTTAGTTTTGATTCTAATAT
* *
14152937 TTTTA-TTTTTATTTTAATAT
1 TTTTAGTTTTGATTCTAATAT
14152957 TTTTAGTT
1 TTTTAGTT
14152965 AAAATTTTAA
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
19 10 0.42
20 12 0.50
21 2 0.08
ACGTcount: A:0.23, C:0.02, G:0.06, T:0.69
Consensus pattern (21 bp):
TTTTAGTTTTGATTCTAATAT
Found at i:14156397 original size:27 final size:27
Alignment explanation
Indices: 14156359--14156479 Score: 152
Period size: 27 Copynumber: 4.5 Consensus size: 27
14156349 CGTTATTTGA
*
14156359 AGGGTAAAATGACCGTAATGCCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTGT
* *
14156386 AGGGTAAAATGACCGTAATACCGCTGA
1 AGGGTAAAATGACCGTAATACCCCTGT
* * *
14156413 AGGGTAAAATGATCATAATGCCCCTGT
1 AGGGTAAAATGACCGTAATACCCCTGT
** *
14156440 AGGGTAAAATGAATGTAATACCCTTGT
1 AGGGTAAAATGACCGTAATACCCCTGT
*
14156467 ATGGTAAAATGAC
1 AGGGTAAAATGAC
14156480 AATTATGTCC
Statistics
Matches: 79, Mismatches: 15, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 79 1.00
ACGTcount: A:0.36, C:0.17, G:0.24, T:0.24
Consensus pattern (27 bp):
AGGGTAAAATGACCGTAATACCCCTGT
Found at i:14156420 original size:54 final size:54
Alignment explanation
Indices: 14156355--14156479 Score: 180
Period size: 54 Copynumber: 2.3 Consensus size: 54
14156345 AGGTCGTTAT
* *
14156355 TTGAAGGGTAAAATGACCGTAATGCCCCTGTAGGGTAAAATGACCGTAATACCGC
1 TTGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGAACGTAATACC-C
* *
14156410 -TGAAGGGTAAAATGATCATAATGCCCCTGTAGGGTAAAATGAATGTAATACCC
1 TTGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGAACGTAATACCC
* *
14156463 TTGTATGGTAAAATGAC
1 TTGAAGGGTAAAATGAC
14156480 AATTATGTCC
Statistics
Matches: 62, Mismatches: 7, Indels: 3
0.86 0.10 0.04
Matches are distributed among these distances:
53 1 0.02
54 61 0.98
ACGTcount: A:0.35, C:0.16, G:0.24, T:0.25
Consensus pattern (54 bp):
TTGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGAACGTAATACCC
Found at i:14156679 original size:27 final size:27
Alignment explanation
Indices: 14156640--14156697 Score: 64
Period size: 27 Copynumber: 2.1 Consensus size: 27
14156630 TGTCACATTC
*
14156640 ACTGTTACAGGTGG-TTATGCTACAATT
1 ACTGATACAGGTGGCTT-TGCTACAATT
* * *
14156667 ACTGATACTGGTGGCTTTGTTACATTT
1 ACTGATACAGGTGGCTTTGCTACAATT
14156694 ACTG
1 ACTG
14156698 TTTTTGGCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
27 24 0.92
28 2 0.08
ACGTcount: A:0.22, C:0.16, G:0.22, T:0.40
Consensus pattern (27 bp):
ACTGATACAGGTGGCTTTGCTACAATT
Found at i:14206473 original size:27 final size:27
Alignment explanation
Indices: 14206442--14206638 Score: 261
Period size: 27 Copynumber: 7.3 Consensus size: 27
14206432 ACCCTGGTTT
* * *
14206442 GTAAAATGACCATAATACCCTTGAAGG
1 GTAAAATGACCATAATGCCCCTGTAGG
**
14206469 GTAAAATGACCATAATGCCTTTGTAGG
1 GTAAAATGACCATAATGCCCCTGTAGG
*
14206496 GTAAAATGACCGTAATGCCCCTGTAGG
1 GTAAAATGACCATAATGCCCCTGTAGG
* ** *
14206523 ATAAAATGGTCGTAATGCCCCTGTAGG
1 GTAAAATGACCATAATGCCCCTGTAGG
* *
14206550 ATAAAATGACCGTAATGCCCC-GTAGG
1 GTAAAATGACCATAATGCCCCTGTAGG
*
14206576 GTAAAATGGCCATAATGCCCCTGTAGG
1 GTAAAATGACCATAATGCCCCTGTAGG
*
14206603 GTAAAATGACCATAATTCCCCTGTAGG
1 GTAAAATGACCATAATGCCCCTGTAGG
14206630 GTAAAATGA
1 GTAAAATGA
14206639 AAATTATGCC
Statistics
Matches: 153, Mismatches: 16, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
26 23 0.15
27 130 0.85
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (27 bp):
GTAAAATGACCATAATGCCCCTGTAGG
Found at i:14206599 original size:80 final size:81
Alignment explanation
Indices: 14206443--14206638 Score: 250
Period size: 80 Copynumber: 2.4 Consensus size: 81
14206433 CCCTGGTTTG
* * * * ** *
14206443 TAAAATGACCATAATACCCTTGAAGGGTAAAATGACCATAATGCCTTTGTAGGGTAAAATGACCG
1 TAAAATGACCATAATGCCCCTGTAGGATAAAATGACCATAATGCCTCCGTAGGGTAAAATGACCA
14206508 TAATGCCCCTGTAGGA
66 TAATGCCCCTGTAGGA
** * * *
14206524 TAAAATGGTCGTAATGCCCCTGTAGGATAAAATGACCGTAATGCC-CCGTAGGGTAAAATGGCCA
1 TAAAATGACCATAATGCCCCTGTAGGATAAAATGACCATAATGCCTCCGTAGGGTAAAATGACCA
*
14206588 TAATGCCCCTGTAGGG
66 TAATGCCCCTGTAGGA
* *
14206604 TAAAATGACCATAATTCCCCTGTAGGGTAAAATGA
1 TAAAATGACCATAATGCCCCTGTAGGATAAAATGA
14206639 AAATTATGCC
Statistics
Matches: 97, Mismatches: 18, Indels: 1
0.84 0.16 0.01
Matches are distributed among these distances:
80 60 0.62
81 37 0.38
ACGTcount: A:0.34, C:0.19, G:0.22, T:0.24
Consensus pattern (81 bp):
TAAAATGACCATAATGCCCCTGTAGGATAAAATGACCATAATGCCTCCGTAGGGTAAAATGACCA
TAATGCCCCTGTAGGA
Found at i:14206609 original size:107 final size:108
Alignment explanation
Indices: 14206443--14206637 Score: 293
Period size: 107 Copynumber: 1.8 Consensus size: 108
14206433 CCCTGGTTTG
* ** *
14206443 TAAAATGACCATAATACCCTTGAAGGGTAAAATGACCATAATGCCTTTGTAGGGTAAAATGACCG
1 TAAAATGACCATAATACCCTCGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACCA
14206508 TAATGCCCCTGTAGGATAAAATGGTCGTAATGCCCCTGTAGGA
66 TAATGCCCCTGTAGGATAAAATGGTCGTAATGCCCCTGTAGGA
* * * *
14206551 TAAAATGACCGTAATGCCC-CGTAGGGTAAAATGGCCATAATGCCCCTGTAGGGTAAAATGACCA
1 TAAAATGACCATAATACCCTCGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACCA
* *
14206615 TAATTCCCCTGTAGGGTAAAATG
66 TAATGCCCCTGTAGGATAAAATG
14206638 AAAATTATGC
Statistics
Matches: 77, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
107 60 0.78
108 17 0.22
ACGTcount: A:0.34, C:0.19, G:0.23, T:0.24
Consensus pattern (108 bp):
TAAAATGACCATAATACCCTCGAAGGGTAAAATGACCATAATGCCCCTGTAGGGTAAAATGACCA
TAATGCCCCTGTAGGATAAAATGGTCGTAATGCCCCTGTAGGA
Found at i:14211737 original size:35 final size:35
Alignment explanation
Indices: 14211697--14211767 Score: 142
Period size: 35 Copynumber: 2.0 Consensus size: 35
14211687 ACTTCTAGCT
14211697 TCATTTCTCACCCAAAATCACACCAGTGACTTTCA
1 TCATTTCTCACCCAAAATCACACCAGTGACTTTCA
14211732 TCATTTCTCACCCAAAATCACACCAGTGACTTTCA
1 TCATTTCTCACCCAAAATCACACCAGTGACTTTCA
14211767 T
1 T
14211768 TTAAACTCAC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
35 36 1.00
ACGTcount: A:0.31, C:0.34, G:0.06, T:0.30
Consensus pattern (35 bp):
TCATTTCTCACCCAAAATCACACCAGTGACTTTCA
Found at i:14223649 original size:29 final size:28
Alignment explanation
Indices: 14223583--14223722 Score: 151
Period size: 29 Copynumber: 4.9 Consensus size: 28
14223573 TACATACATG
14223583 CATATGGCCCA-CTAGGCCCAATCTCA-TT
1 CATATGGCCCATC-AGGCCCAAT-TCACTT
* *
14223611 TATATGGCCCATCCGGCCCAATTCACGTT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
*
14223640 CATATGGCCCATTAGGCCCAATTCACATT
1 CATATGGCCCATCAGGCCCAATTCAC-TT
*
14223669 CATATGGCCCATTAGGCCCAATCTCA-TT
1 CATATGGCCCATCAGGCCCAAT-TCACTT
* * *
14223697 TATATGGCCCATCCGGCCCAAATCAC
1 CATATGGCCCATCAGGCCCAATTCAC
14223723 ATTATATTTA
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
27 6 0.06
28 38 0.39
29 50 0.52
30 3 0.03
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.26
Consensus pattern (28 bp):
CATATGGCCCATCAGGCCCAATTCACTT
Found at i:14223656 original size:57 final size:57
Alignment explanation
Indices: 14223583--14223729 Score: 174
Period size: 57 Copynumber: 2.6 Consensus size: 57
14223573 TACATACATG
* * * *
14223583 CATATGGCCCACTAGGCCCAA-TCTCATTTATATGGCCCATCCGGCCCAAT-TCACGTT
1 CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCA--TT
*
14223640 CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCATT
* ** *
14223697 TATATGGCCCATCCGGCCCAAATCACATT-ATAT
1 CATATGGCCCATTAGGCCCAATTCACATTCATAT
14223730 TTATGCATAC
Statistics
Matches: 79, Mismatches: 9, Indels: 5
0.85 0.10 0.05
Matches are distributed among these distances:
56 4 0.05
57 47 0.59
58 25 0.32
59 3 0.04
ACGTcount: A:0.26, C:0.33, G:0.14, T:0.27
Consensus pattern (57 bp):
CATATGGCCCATTAGGCCCAATTCACATTCATATGGCCCATCAGGCCCAATCTCATT
Found at i:14228179 original size:28 final size:28
Alignment explanation
Indices: 14228139--14228217 Score: 95
Period size: 28 Copynumber: 2.8 Consensus size: 28
14228129 TTAATTCACG
* * *
14228139 TTCATATAGCCCATCCGACCCAATCAAA
1 TTCATATGGCCCATTCGGCCCAATCAAA
* **
14228167 TTCATATGGCCCATTAGGCCCAATCTTA
1 TTCATATGGCCCATTCGGCCCAATCAAA
*
14228195 TTTATATGGCCCATTCGGCCCAA
1 TTCATATGGCCCATTCGGCCCAA
14228218 ATCACTTTAT
Statistics
Matches: 43, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
28 43 1.00
ACGTcount: A:0.28, C:0.32, G:0.13, T:0.28
Consensus pattern (28 bp):
TTCATATGGCCCATTCGGCCCAATCAAA
Found at i:14228762 original size:27 final size:27
Alignment explanation
Indices: 14228724--14228778 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
14228714 ACTAGGGGAC
14228724 TAGCATCCAACATAATTCACCCCCTTA
1 TAGCATCCAACATAATTCACCCCCTTA
14228751 TAGCATCCAACATAATTCACCCCCTTA
1 TAGCATCCAACATAATTCACCCCCTTA
14228778 T
1 T
14228779 CTCACTTAAG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.36, G:0.04, T:0.27
Consensus pattern (27 bp):
TAGCATCCAACATAATTCACCCCCTTA
Found at i:14231501 original size:30 final size:30
Alignment explanation
Indices: 14231443--14231502 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
14231433 TTCCCGAACC
* *
14231443 TAGGGGCAAAAGTGTAATTATGTAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
14231473 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
14231503 CATATTAAAT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:14238239 original size:26 final size:26
Alignment explanation
Indices: 14238196--14238245 Score: 73
Period size: 26 Copynumber: 1.9 Consensus size: 26
14238186 TAATAATATT
* *
14238196 GTAGCAAAGCTGCTAGTAACAGTAGC
1 GTAGCAAAGCTACCAGTAACAGTAGC
*
14238222 GTAGCAAAGCTACCAGTATCAGTA
1 GTAGCAAAGCTACCAGTAACAGTA
14238246 TATGGCACAA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 21 1.00
ACGTcount: A:0.36, C:0.20, G:0.24, T:0.20
Consensus pattern (26 bp):
GTAGCAAAGCTACCAGTAACAGTAGC
Found at i:14238298 original size:20 final size:20
Alignment explanation
Indices: 14238275--14238325 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
14238265 TAGCGGCACG
14238275 AAGCCGTCAATAGTGGTACA
1 AAGCCGTCAATAGTGGTACA
*
14238295 AAGCCATCAATAGTGGTACA
1 AAGCCGTCAATAGTGGTACA
14238315 AAGCCGTCAAT
1 AAGCCGTCAAT
14238326 GGAATACCCA
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.37, C:0.22, G:0.22, T:0.20
Consensus pattern (20 bp):
AAGCCGTCAATAGTGGTACA
Found at i:14244018 original size:44 final size:42
Alignment explanation
Indices: 14243942--14244108 Score: 115
Period size: 43 Copynumber: 3.9 Consensus size: 42
14243932 CGATATGTTT
* * *
14243942 TTTCGTGTAAGACCACATCTGGGACGTTGGCATCG-ACTTATGA
1 TTTCGTGTAAGACCACATCTGAGACATCGGCATCGTA-TT-TGA
**
14243985 TTTGCGTGTAAGACCATGTCTGAGACATCGGCATCGTATTTGA
1 TTT-CGTGTAAGACCACATCTGAGACATCGGCATCGTATTTGA
* * * * *
14244028 TTTCATGTAAGACC-CTATTTGGGATAGT-GGCATCAATATTTGA
1 TTTCGTGTAAGACCAC-ATCTGAGACA-TCGGCATC-GTATTTGA
* * * * * *
14244071 TTACATGTAAGACCACGTCTGGGACATTGGCATTGTAT
1 TTTCGTGTAAGACCACATCTGAGACATCGGCATCGTAT
14244109 GAGCTTTTCG
Statistics
Matches: 99, Mismatches: 18, Indels: 15
0.75 0.14 0.11
Matches are distributed among these distances:
42 26 0.26
43 42 0.42
44 30 0.30
45 1 0.01
ACGTcount: A:0.25, C:0.18, G:0.24, T:0.33
Consensus pattern (42 bp):
TTTCGTGTAAGACCACATCTGAGACATCGGCATCGTATTTGA
Found at i:14246510 original size:54 final size:54
Alignment explanation
Indices: 14246428--14246536 Score: 209
Period size: 54 Copynumber: 2.0 Consensus size: 54
14246418 ATGGGTTGGA
*
14246428 AATCTCTCGATTTGACGAAAAATTAATGTTGAAATTATTGTGTGTTTCCTGCTG
1 AATCTCTCGATTTGACGAAAAATTAATGTTGAAATTATTGTGTGTTTCATGCTG
14246482 AATCTCTCGATTTGACGAAAAATTAATGTTGAAATTATTGTGTGTTTCATGCTG
1 AATCTCTCGATTTGACGAAAAATTAATGTTGAAATTATTGTGTGTTTCATGCTG
14246536 A
1 A
14246537 TCAAAGTTGT
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 54 1.00
ACGTcount: A:0.29, C:0.12, G:0.18, T:0.40
Consensus pattern (54 bp):
AATCTCTCGATTTGACGAAAAATTAATGTTGAAATTATTGTGTGTTTCATGCTG
Found at i:14249611 original size:73 final size:73
Alignment explanation
Indices: 14249492--14249637 Score: 292
Period size: 73 Copynumber: 2.0 Consensus size: 73
14249482 AGTTATACCA
14249492 TTGTTGATAACTTGTGATTTTTGTTGTTTGATGATGAAATATGAAATATATGTTTTAGATTAACA
1 TTGTTGATAACTTGTGATTTTTGTTGTTTGATGATGAAATATGAAATATATGTTTTAGATTAACA
14249557 TATTTTGT
66 TATTTTGT
14249565 TTGTTGATAACTTGTGATTTTTGTTGTTTGATGATGAAATATGAAATATATGTTTTAGATTAACA
1 TTGTTGATAACTTGTGATTTTTGTTGTTTGATGATGAAATATGAAATATATGTTTTAGATTAACA
14249630 TATTTTGT
66 TATTTTGT
14249638 ATTGGAGTTT
Statistics
Matches: 73, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
73 73 1.00
ACGTcount: A:0.29, C:0.03, G:0.18, T:0.51
Consensus pattern (73 bp):
TTGTTGATAACTTGTGATTTTTGTTGTTTGATGATGAAATATGAAATATATGTTTTAGATTAACA
TATTTTGT
Found at i:14254427 original size:53 final size:54
Alignment explanation
Indices: 14254300--14254544 Score: 220
Period size: 55 Copynumber: 4.6 Consensus size: 54
14254290 CTTACTATTT
* * *
14254300 CCATGACTTGTCATGGTCTTACATGGTATCC-T---TT-TGAAACTTACCATTG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATG
* * *
14254349 CCATGTCTCGACATGGTCTTACATGGTATCCTTGCCTTATG-AACTCACCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATG
** * *
14254402 CCATGCCTTGGTATGGTCTTACATGGGA-CCTTTGCCTTATAGAAACTTATCAATG
1 CCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTTAT-GAAACTTACCAATG
* * * * * *
14254457 TCATGTCTTGACATGGTCTTACATGATATCCTCGTCTTA-GAAACCTTACCAATTT
1 CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAA-CTTACCAA-TG
* *
14254512 TCATGCCTTGGCATGGT-TCTACATGGTATCCTT
1 CCATGCCTTGACATGGTCT-TACATGGTATCCTT
14254545 AAACCCTAAT
Statistics
Matches: 158, Mismatches: 26, Indels: 18
0.78 0.13 0.09
Matches are distributed among these distances:
49 28 0.18
50 1 0.01
52 2 0.01
53 48 0.30
54 11 0.07
55 66 0.42
56 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.17, T:0.36
Consensus pattern (54 bp):
CCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAAACTTACCAATG
Found at i:14261734 original size:43 final size:42
Alignment explanation
Indices: 14261624--14261745 Score: 140
Period size: 43 Copynumber: 2.9 Consensus size: 42
14261614 CATCAATTCG
* *
14261624 TGATCTACGTGTAAGACCATGTCTGGGACATTGGCATCGTATA
1 TGAT-TACGTGTAAGACCACGTCTGGGACAATGGCATCGTATA
* * *
14261667 TGATTTCGTGTAAGACCTTC-TCTGGGACAATGGCATCGATATT
1 TGATTACGTGTAAGACC-ACGTCTGGGACAATGGCATCG-TATA
*
14261710 TGATTACATGTAAGACCACGTCTGGGA-AATTGGCAT
1 TGATTACGTGTAAGACCACGTCTGGGACAA-TGGCAT
14261746 TGTACGAACT
Statistics
Matches: 67, Mismatches: 8, Indels: 8
0.81 0.10 0.10
Matches are distributed among these distances:
42 32 0.48
43 35 0.52
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TGATTACGTGTAAGACCACGTCTGGGACAATGGCATCGTATA
Found at i:14264583 original size:46 final size:44
Alignment explanation
Indices: 14264500--14264612 Score: 147
Period size: 46 Copynumber: 2.5 Consensus size: 44
14264490 ATTGTGAGCT
*
14264500 AGTGTAAGACATGTCTAGGACATGCATCGGCCTCGAGACGTAAGTC
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGT--GTC
* *
14264546 AGTGTAAGACATGTCTGGGACATGCATCGG-CTACGAGATGTGTT
1 AGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTGTC
*
14264590 AGTGTAAGACCATGTTTGGGACA
1 AGTGTAAGA-CATGTCTGGGACA
14264613 CGGCATTGGG
Statistics
Matches: 61, Mismatches: 4, Indels: 5
0.87 0.06 0.07
Matches are distributed among these distances:
44 11 0.18
45 14 0.23
46 36 0.59
ACGTcount: A:0.27, C:0.18, G:0.30, T:0.25
Consensus pattern (44 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTGTC
Found at i:14267226 original size:40 final size:41
Alignment explanation
Indices: 14267165--14267436 Score: 349
Period size: 40 Copynumber: 6.8 Consensus size: 41
14267155 CATTTGAATG
* * * *
14267165 ATATCTGGGCTAAGTCCCGAAGGCATTTATGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
14267205 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-G
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* *
14267245 ATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * * *
14267285 ATACCCGGGTTAAGACCCGAAGGCAATTGTGCTAG-TGATT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
14267325 TTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-T
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
*
14267365 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CT
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
* * *
14267405 ATACCCGGGTTAAGACCCGAAGGCAATTGTGC
1 ATATCCGGGCTAAGACCCGAAGGCATTTGTGC
14267437 TTGTGGTTAT
Statistics
Matches: 203, Mismatches: 24, Indels: 10
0.86 0.10 0.04
Matches are distributed among these distances:
39 2 0.01
40 195 0.96
41 6 0.03
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (41 bp):
ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATT
Found at i:14267393 original size:120 final size:120
Alignment explanation
Indices: 14267175--14267456 Score: 485
Period size: 120 Copynumber: 2.4 Consensus size: 120
14267165 ATATCTGGGC
* * *
14267175 TAAGTCCCGAAGGCATTTATGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
14267240 TTGAGATATCCGGGCTAAGACCTGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
66 TTGAGATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
14267295 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
*
14267360 TTGATATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
66 TTGAGATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
* * *
14267415 TAAGACCCGAAGGCAATTGTGCTTGTGGTTATATCC-GGCTAA
1 TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAA
14267457 ATTTCGAAGA
Statistics
Matches: 154, Mismatches: 8, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
119 6 0.04
120 148 0.96
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (120 bp):
TAAGACCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTTGTGCGAG
TTGAGATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATACCCGGGT
Found at i:14276349 original size:40 final size:40
Alignment explanation
Indices: 14275445--14276321 Score: 1659
Period size: 40 Copynumber: 21.9 Consensus size: 40
14275435 AGTGACCATA
14275445 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275485 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275525 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275565 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275605 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275645 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275685 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275725 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275765 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275805 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275845 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275885 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275925 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14275965 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14276005 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14276045 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14276085 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14276125 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14276165 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
14276205 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
* * * * *
14276245 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
** *
14276284 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTACTA
1 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA
14276322 TAACCGGGCT
Statistics
Matches: 828, Mismatches: 8, Indels: 2
0.99 0.01 0.00
Matches are distributed among these distances:
39 34 0.04
40 794 0.96
ACGTcount: A:0.29, C:0.20, G:0.25, T:0.25
Consensus pattern (40 bp):
TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:14283147 original size:40 final size:40
Alignment explanation
Indices: 14283092--14283202 Score: 177
Period size: 40 Copynumber: 2.8 Consensus size: 40
14283082 NNNNTGATTT
14283092 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
*
14283132 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTA
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
* * * *
14283172 TACCCGAGTTAAGACCCGAAGGCAATTGTGC
1 TATCCGGGCTAAGACCCGAAGGCATTTGTGC
14283203 TTGTGGTTAT
Statistics
Matches: 66, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 66 1.00
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.23
Consensus pattern (40 bp):
TATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGATA
Found at i:14283719 original size:55 final size:55
Alignment explanation
Indices: 14283635--14283743 Score: 200
Period size: 55 Copynumber: 2.0 Consensus size: 55
14283625 CACTATCAAA
* *
14283635 GCCCTTTTGGTACTCTTTTAATTGAACTCTGGGTATGGCATGTATAGGACTACCC
1 GCCCTTTTGGTACTCTTTTAATTGAACTCTGGATATGGCAAGTATAGGACTACCC
14283690 GCCCTTTTGGTACTCTTTTAATTGAACTCTGGATATGGCAAGTATAGGACTACC
1 GCCCTTTTGGTACTCTTTTAATTGAACTCTGGATATGGCAAGTATAGGACTACC
14283744 TGTTTTGTTG
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
55 52 1.00
ACGTcount: A:0.22, C:0.21, G:0.21, T:0.36
Consensus pattern (55 bp):
GCCCTTTTGGTACTCTTTTAATTGAACTCTGGATATGGCAAGTATAGGACTACCC
Found at i:14286237 original size:13 final size:13
Alignment explanation
Indices: 14286219--14286244 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
14286209 GTTCAAACGT
14286219 CAAAATTTTCAAA
1 CAAAATTTTCAAA
14286232 CAAAATTTTCAAA
1 CAAAATTTTCAAA
14286245 AAATCATACC
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.31
Consensus pattern (13 bp):
CAAAATTTTCAAA
Found at i:14287914 original size:21 final size:22
Alignment explanation
Indices: 14287879--14287920 Score: 68
Period size: 21 Copynumber: 2.0 Consensus size: 22
14287869 ATTAGATATG
*
14287879 AGAATTGAGGAAGAAAAGAGAA
1 AGAATAGAGGAAGAAAAGAGAA
14287901 AGAATAGA-GAAGAAAAGAGA
1 AGAATAGAGGAAGAAAAGAGA
14287921 GTGAGAGAGA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
21 12 0.63
22 7 0.37
ACGTcount: A:0.62, C:0.00, G:0.31, T:0.07
Consensus pattern (22 bp):
AGAATAGAGGAAGAAAAGAGAA
Found at i:14288096 original size:25 final size:25
Alignment explanation
Indices: 14288062--14288111 Score: 84
Period size: 25 Copynumber: 2.0 Consensus size: 25
14288052 TAAGTAATCC
14288062 CTAAAACT-CCTCGTTTCATTTAAAA
1 CTAAAACTCCCT-GTTTCATTTAAAA
14288087 CTAAAACTCCCTGTTTCATTTAAAA
1 CTAAAACTCCCTGTTTCATTTAAAA
14288112 GAGTTGACTT
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
25 21 0.88
26 3 0.12
ACGTcount: A:0.36, C:0.24, G:0.04, T:0.36
Consensus pattern (25 bp):
CTAAAACTCCCTGTTTCATTTAAAA
Found at i:14288987 original size:31 final size:31
Alignment explanation
Indices: 14288946--14289016 Score: 124
Period size: 31 Copynumber: 2.3 Consensus size: 31
14288936 TTACTAGGCT
14288946 GAAGCCTTTTCATAAATCATATCACTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
* *
14288977 GAAGCGTTTTCATAAATCATATCATTGGGCC
1 GAAGCCTTTTCATAAATCATATCACTGGGCC
14289008 GAAGCCTTT
1 GAAGCCTTT
14289017 ACTGTAAATG
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
31 37 1.00
ACGTcount: A:0.28, C:0.23, G:0.18, T:0.31
Consensus pattern (31 bp):
GAAGCCTTTTCATAAATCATATCACTGGGCC
Found at i:14289280 original size:26 final size:26
Alignment explanation
Indices: 14289235--14289384 Score: 239
Period size: 26 Copynumber: 5.8 Consensus size: 26
14289225 CTCTTTTAAT
14289235 AACTGGGGCA-AAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
14289260 AACTGGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
* **
14289286 AACTGGGGCATAAGCCTTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
*
14289312 AACTAGGGCATAAGCCCTTTTCGGTA
1 AACTGGGGCATAAGCCCTTTTCGGTA
**
14289338 AACTGGGGCATAAGCCCTTTTCAATA
1 AACTGGGGCATAAGCCCTTTTCGGTA
14289364 AACTGGGGCATAAGCCCTTTT
1 AACTGGGGCATAAGCCCTTTT
14289385 ACACTTCCTC
Statistics
Matches: 114, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
25 10 0.09
26 104 0.91
ACGTcount: A:0.27, C:0.23, G:0.23, T:0.27
Consensus pattern (26 bp):
AACTGGGGCATAAGCCCTTTTCGGTA
Found at i:14290283 original size:27 final size:27
Alignment explanation
Indices: 14290188--14290274 Score: 122
Period size: 27 Copynumber: 3.2 Consensus size: 27
14290178 TATTCGTCAT
* * *
14290188 TTTACCATACAGGGG-TATTGCGGTCAC
1 TTTACCCTACAGGGGCT-TTACGGTCTC
14290215 TTTACCCTACAGGGGCTTTACGGTCTC
1 TTTACCCTACAGGGGCTTTACGGTCTC
*
14290242 TTTACCCTACAGGGGCTTTACGGTCTT
1 TTTACCCTACAGGGGCTTTACGGTCTC
14290269 TTTACC
1 TTTACC
14290275 TAATAGGGGT
Statistics
Matches: 55, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 54 0.98
28 1 0.02
ACGTcount: A:0.17, C:0.26, G:0.22, T:0.34
Consensus pattern (27 bp):
TTTACCCTACAGGGGCTTTACGGTCTC
Found at i:14290651 original size:27 final size:27
Alignment explanation
Indices: 14290390--14290757 Score: 296
Period size: 27 Copynumber: 13.7 Consensus size: 27
14290380 TAGAAAGTCA
* * *
14290390 AGGGTATTTTTGTAACTTTGTAAATC-
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
14290416 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * *
14290444 AGGGTATTTTGGTAATTTCACAAA-CC
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
14290470 AGTGGTATTTTGGTAATTTTACAAA-CT
1 AG-GGTATTTTGGTAATTTTATAAATCG
* *
14290497 AGGGGTATTTTGGTAATTTTACAAATTG
1 A-GGGTATTTTGGTAATTTTATAAATCG
* * * * *
14290525 AGGGTATTTTAGCAATTTTACAAACCA
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * *
14290552 AGGGTATTTTAGCAATTTTACAAA-CT
1 AGGGTATTTTGGTAATTTTATAAATCG
*
14290578 AGGGTATTTTGGTAATTTTACT-GATCG
1 AGGGTATTTTGGTAATTTTA-TAAATCG
*
14290605 AGGGTATTTTGGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* *
14290632 AGGGTATTTTAGTAATTTTGTAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
*** * *
14290659 AGGGTAAAATAGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
**** *
14290686 AGGGTAAAACGGTAATTCTATAAATCG
1 AGGGTATTTTGGTAATTTTATAAATCG
* * * *
14290713 AGGGTACTTTGGTAATTTTACAATTTG
1 AGGGTATTTTGGTAATTTTATAAATCG
**
14290740 AGGGTATTTCAGTAATTT
1 AGGGTATTTTGGTAATTT
14290758 GGTAAACTAA
Statistics
Matches: 290, Mismatches: 44, Indels: 15
0.83 0.13 0.04
Matches are distributed among these distances:
26 24 0.08
27 263 0.91
28 3 0.01
ACGTcount: A:0.31, C:0.08, G:0.21, T:0.40
Consensus pattern (27 bp):
AGGGTATTTTGGTAATTTTATAAATCG
Found at i:14294444 original size:26 final size:26
Alignment explanation
Indices: 14294415--14294493 Score: 113
Period size: 26 Copynumber: 3.0 Consensus size: 26
14294405 AGTGGATAAG
14294415 TTGTAAAATTACCAAAATACCCCTGT
1 TTGTAAAATTACCAAAATACCCCTGT
* *
14294441 TTGTAAAATTACCAAAATACTCCTAAT
1 TTGTAAAATTACCAAAATACCCCT-GT
**
14294468 TTGTAAAATTACTGAAATACCCCTGT
1 TTGTAAAATTACCAAAATACCCCTGT
14294494 ACGGTAGAAT
Statistics
Matches: 46, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
26 24 0.52
27 22 0.48
ACGTcount: A:0.39, C:0.20, G:0.08, T:0.33
Consensus pattern (26 bp):
TTGTAAAATTACCAAAATACCCCTGT
Found at i:14294504 original size:27 final size:27
Alignment explanation
Indices: 14294474--14294614 Score: 167
Period size: 27 Copynumber: 5.2 Consensus size: 27
14294464 TAATTTGTAA
*
14294474 AATTACTGAAATACCCCTGTACGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
*
14294501 AATTACTGAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* *
14294528 AATTACTAAAATACCCTTGTAGGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * *
14294555 AAATACTGAAATGCCCCTGTAAGGTAG
1 AATTACTGAAATACCCCTGTAGGGTAG
* * * *
14294582 AATTACCGAGATA-CCCTCGTGGGGTAA
1 AATTACTGAAATACCCCT-GTAGGGTAG
14294609 AATTAC
1 AATTAC
14294615 CATTTTGCCC
Statistics
Matches: 98, Mismatches: 15, Indels: 2
0.85 0.13 0.02
Matches are distributed among these distances:
26 4 0.04
27 94 0.96
ACGTcount: A:0.35, C:0.18, G:0.21, T:0.26
Consensus pattern (27 bp):
AATTACTGAAATACCCCTGTAGGGTAG
Found at i:14295358 original size:33 final size:32
Alignment explanation
Indices: 14295311--14295372 Score: 79
Period size: 33 Copynumber: 1.9 Consensus size: 32
14295301 TACTGTAATT
* *
14295311 TGGTGGCTTCGCCACATATATATATATCTGTTC
1 TGGTGGCCTAGCCACA-ATATATATATCTGTTC
* *
14295344 TGGTGGCCTAGCCACAATATCTGTATCTG
1 TGGTGGCCTAGCCACAATATATATATCTG
14295373 GTGACTTCGT
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
32 11 0.44
33 14 0.56
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.35
Consensus pattern (32 bp):
TGGTGGCCTAGCCACAATATATATATCTGTTC
Found at i:14299535 original size:40 final size:40
Alignment explanation
Indices: 14299491--14299669 Score: 270
Period size: 40 Copynumber: 4.5 Consensus size: 40
14299481 TGCTGGAATA
*
14299491 CCTTCGGGACATAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
14299531 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
14299571 CATTCGGGACTTAGCCCGAATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* * * *
14299611 CCTTCGGGACTTAGCCCGGA-ACTACTCACTAGCGCAAATG
1 CCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCACAAATG
*
14299651 CCTTCGAGACTTAGCCCGG
1 CCTTCGGGACTTAGCCCGG
14299670 TTATCATCCA
Statistics
Matches: 128, Mismatches: 10, Indels: 2
0.91 0.07 0.01
Matches are distributed among these distances:
39 1 0.01
40 127 0.99
ACGTcount: A:0.27, C:0.29, G:0.22, T:0.21
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:14314957 original size:21 final size:21
Alignment explanation
Indices: 14314922--14314973 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
14314912 TTTAGATATG
*
14314922 AGAATTGAGGAAGAAATGAGAA
1 AGAATAGA-GAAGAAATGAGAA
*
14314944 AGAATAGAGAAGAAATGAGAG
1 AGAATAGAGAAGAAATGAGAA
14314965 AG-ATAGAGA
1 AGAATAGAGA
14314974 GAGCTCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
20 7 0.25
21 14 0.50
22 7 0.25
ACGTcount: A:0.56, C:0.00, G:0.33, T:0.12
Consensus pattern (21 bp):
AGAATAGAGAAGAAATGAGAA
Found at i:14317710 original size:27 final size:27
Alignment explanation
Indices: 14317680--14317884 Score: 216
Period size: 27 Copynumber: 7.6 Consensus size: 27
14317670 ATATTGAGTC
* * * *
14317680 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAATT
* * *
14317707 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
*
14317734 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTC-AATT
** *
14317762 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAATT
* *
14317789 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAATT
* *
14317816 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAATT
* *
14317843 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAATT
14317870 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
14317885 GTACAATTTA
Statistics
Matches: 156, Mismatches: 19, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
27 132 0.85
28 24 0.15
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAATT
Found at i:14322285 original size:93 final size:93
Alignment explanation
Indices: 14322178--14322348 Score: 288
Period size: 93 Copynumber: 1.8 Consensus size: 93
14322168 GCCCCTAAGT
* * *
14322178 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAATTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
14322243 CGAGTTTGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
14322271 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
14322336 CGAGTTCGGATGC
66 CGAGTTCGGATGC
14322349 TCAACCATCC
Statistics
Matches: 72, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
93 72 1.00
ACGTcount: A:0.28, C:0.27, G:0.22, T:0.23
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:14322345 original size:46 final size:46
Alignment explanation
Indices: 14322173--14322345 Score: 199
Period size: 46 Copynumber: 3.7 Consensus size: 46
14322163 AACCCGCCCC
* * * *
14322173 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* * * *
14322219 TAAGTGAATTCGGACTCAACTCAACGAGTTTGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
14322267 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
14322312 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
14322346 TGCTCAACCA
Statistics
Matches: 104, Mismatches: 16, Indels: 14
0.78 0.12 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 59 0.57
47 27 0.26
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.27, G:0.21, T:0.23
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:14327532 original size:47 final size:47
Alignment explanation
Indices: 14327481--14327850 Score: 517
Period size: 47 Copynumber: 7.7 Consensus size: 47
14327471 TTAGGATTCT
* * *
14327481 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
14327528 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
*
14327577 ATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* *
14327626 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
14327673 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
14327720 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
* * * * *
14327769 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
14327816 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14327851 TCCCGAAGGG
Statistics
Matches: 297, Mismatches: 21, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
46 1 0.00
47 159 0.54
49 137 0.46
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:14327572 original size:49 final size:49
Alignment explanation
Indices: 14327502--14327850 Score: 516
Period size: 49 Copynumber: 7.3 Consensus size: 49
14327492 GTGAACATGC
*
14327502 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
14327551 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
14327600 ATATATATGATAAGGCCTAATGGCCGATGTGATAAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
14327647 ATATATGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* *
14327694 ATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
14327743 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--T
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
* * * * * * *
14327790 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTAT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
14327839 A-A-ATGTGATAAG
1 ATATATGTGATAAG
14327851 TCCCGAAGGG
Statistics
Matches: 278, Mismatches: 18, Indels: 10
0.91 0.06 0.03
Matches are distributed among these distances:
47 138 0.50
48 1 0.00
49 139 0.50
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (49 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTAT
Found at i:14327581 original size:96 final size:96
Alignment explanation
Indices: 14327481--14327850 Score: 525
Period size: 96 Copynumber: 3.9 Consensus size: 96
14327471 TTAGGATTCT
* * *
14327481 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAA
1 ATGTGATGAATGTGAA-AGTGTATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAAA
14327545 GTGTATATATATGTGATAAGGCCTAATGGCCG
65 GTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
14327577 ATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATAAATGTGAA
1 ATGTGATGAATGTGAAAGTGTATATAT-GA-GATAAGGCCTAATGGCCAATGTGATGAATGTGAA
*
14327642 AGTG--TATATATGTGATAAGGCCTAATAGCCG
64 AGTGTATATATATGTGATAAGGCCTAATGGCCG
* * *
14327673 ATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCTAATAGCCAATGTGATGAATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
14327738 TGTATATATATGTGATAAGGCCTAATGGCCG
66 TGTATATATATGTGATAAGGCCTAATGGCCG
* * * * * * *
14327769 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAG
1 ATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
14327834 TGTATA-A-ATGTGATAAG
66 TGTATATATATGTGATAAG
14327851 TCCCGAAGGG
Statistics
Matches: 249, Mismatches: 20, Indels: 12
0.89 0.07 0.04
Matches are distributed among these distances:
94 45 0.18
95 2 0.01
96 164 0.66
97 1 0.00
98 37 0.15
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (96 bp):
ATGTGATGAATGTGAAAGTGTATATATGAGATAAGGCCTAATGGCCAATGTGATGAATGTGAAAG
TGTATATATATGTGATAAGGCCTAATGGCCG
Found at i:14327747 original size:143 final size:143
Alignment explanation
Indices: 14327502--14327850 Score: 545
Period size: 143 Copynumber: 2.4 Consensus size: 143
14327492 GTGAACATGC
*
14327502 ATATATGAGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGC
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGC
* *
14327567 CTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGA
64 CTAATAGCCAATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGA
14327632 TAAATGTGAAAGTGT
129 TAAATGTGAAAGTGT
* *
14327647 ATATATGTGATAAGGCCTAATAGCCGATGTGATAAATGTGAAAGTGTATATATGTGATAAGGCCT
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
* *
14327712 AATAGCCAATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCGATGTGATG
66 AATAGCCAATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATA
14327777 AATGTGAAAGTGT
131 AATGTGAAAGTGT
* * * * * * * *
14327790 ATATATGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAG
14327851 TCCCGAAGGG
Statistics
Matches: 187, Mismatches: 17, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
143 144 0.77
145 43 0.23
ACGTcount: A:0.34, C:0.09, G:0.28, T:0.29
Consensus pattern (143 bp):
ATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCT
AATAGCCAATGTGATGAATGTGAAAGTGTATATATATATGATAAGGCCTAATGGCCGATGTGATA
AATGTGAAAGTGT
Found at i:14328025 original size:37 final size:37
Alignment explanation
Indices: 14327969--14328047 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
14327959 CCGAGCTTTA
* * *
14327969 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
14328006 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
14328043 AAGAC
1 AAGAC
14328048 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:14330941 original size:40 final size:40
Alignment explanation
Indices: 14330894--14330993 Score: 112
Period size: 40 Copynumber: 2.5 Consensus size: 40
14330884 CTCGCACAAG
* ** *
14330894 GCCTTCGGGTCTTAACCCGGATA-TGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAACCCGGA-ACTACTCACTAGCACAAAT
* *
14330934 GCCTTCGGGACTTAGCCCGGAACTACTCACTAGCGCAAAT
1 GCCTTCGGGACTTAACCCGGAACTACTCACTAGCACAAAT
* *
14330974 GCCTTCGAGACTTAGCCCGG
1 GCCTTCGGGACTTAACCCGG
14330994 TTATCATCCA
Statistics
Matches: 52, Mismatches: 7, Indels: 2
0.85 0.11 0.03
Matches are distributed among these distances:
39 1 0.02
40 51 0.98
ACGTcount: A:0.23, C:0.30, G:0.24, T:0.23
Consensus pattern (40 bp):
GCCTTCGGGACTTAACCCGGAACTACTCACTAGCACAAAT
Found at i:14331108 original size:94 final size:93
Alignment explanation
Indices: 14330934--14331114 Score: 229
Period size: 94 Copynumber: 1.9 Consensus size: 93
14330924 TAGCATAAAT
* * *
14330934 GCCTTCGGGACTTAGCCCGGAACTACTCACTAGCGCAAATGCCTTCGAGACTTAGCCCGGTTATC
1 GCCTTCGGGACTTAGCCCGGAACTACTCACTAGCACAAAAGCCTTCGAGACTTAGCCCGGATATC
* **
14330999 ATCCAAATATTCATGCACATATCAATAA
66 ATCCAAACAACCATGCACATATCAATAA
* * **
14331027 GCCTTCGGGACTTAGCCTGGATA-TAGTCGTTTAGCACAAAAGCCTTCGAGACTTAGCCCGGATA
1 GCCTTCGGGACTTAGCCCGGA-ACTACTC-ACTAGCACAAAAGCCTTCGAGACTTAGCCCGGATA
* *
14331091 TCATTCAAGCAACCATGCACATAT
64 TCATCCAAACAACCATGCACATAT
14331115 ATCAATAAAT
Statistics
Matches: 74, Mismatches: 12, Indels: 3
0.83 0.13 0.03
Matches are distributed among these distances:
93 24 0.32
94 50 0.68
ACGTcount: A:0.29, C:0.28, G:0.19, T:0.25
Consensus pattern (93 bp):
GCCTTCGGGACTTAGCCCGGAACTACTCACTAGCACAAAAGCCTTCGAGACTTAGCCCGGATATC
ATCCAAACAACCATGCACATATCAATAA
Found at i:14334561 original size:168 final size:168
Alignment explanation
Indices: 14334179--14334563 Score: 493
Period size: 168 Copynumber: 2.3 Consensus size: 168
14334169 ATGCAATTAC
* * * * * *
14334179 ATATCGATGCCACTATCTCACACA-GGATCTTACTCGTAAACACATATCAGAATCACCTATCGAT
1 ATATCGATGCCAATATATTAAACATGG-TCTTACTCGTAAACACATATCGGAATCACATATCGAT
*
14334243 GCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGGAATCACATATCGATACCAACATA
65 GCCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACATATCGATACCAACATA
** * ** *
14334308 TTAAATGTGGTCTTACTTGCACACACATATTGGAATCAC
130 TTAAACATGGTCTTACTCGCACACACATATCAGAATCAA
* * * *
14334347 ATATCGATGCCAATATGTTAAACATGGTCTTAGTCGCACACACATATCGGAATCACATATCGATG
1 ATATCGATGCCAATATATTAAACATGGTCTTACTCGTAAACACATATCGGAATCACATATCGATG
* * * * * * *
14334412 CCAATGTATTAAACGTGGTCTTACTCGCGCACACATATTGAAATCATATATCGATGCTAACGTAT
66 CCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACATATCGATACCAACATAT
14334477 TAAACATGGTCTTACTCGCACACACATATCAGAATCAA
131 TAAACATGGTCTTACTCGCACACACATATCAGAATCAA
* ** **
14334515 ATATCGATGCCAATGTATTAAATGTGGTCTTACTCGTAGTCACATATCG
1 ATATCGATGCCAATATATTAAACATGGTCTTACTCGTAAACACATATCG
14334564 ATGCCAACGT
Statistics
Matches: 185, Mismatches: 31, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
168 183 0.99
169 2 0.01
ACGTcount: A:0.34, C:0.24, G:0.15, T:0.28
Consensus pattern (168 bp):
ATATCGATGCCAATATATTAAACATGGTCTTACTCGTAAACACATATCGGAATCACATATCGATG
CCAACGTATTAAACGTGGTCTTACTCGCACACACATATCGAAATCACATATCGATACCAACATAT
TAAACATGGTCTTACTCGCACACACATATCAGAATCAA
Found at i:14334562 original size:56 final size:56
Alignment explanation
Indices: 14334206--14334550 Score: 465
Period size: 56 Copynumber: 6.2 Consensus size: 56
14334196 TCACACAGGA
* * * *
14334206 TCTTACTCGTAAACACATATCAGAATCACCTATCGATGCCAACGTATTAAACGTGG
1 TCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGG
* * *
14334262 TCTTACTCGCACACACATATCGGAATCACATATCGATACCAACATATTAAATGTGG
1 TCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGG
* * ** * *
14334318 TCTTACTTGCACACACATATTGGAATCACATATCGATGCCAATATGTTAAACATGG
1 TCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGG
* *
14334374 TCTTAGTCGCACACACATATCGGAATCACATATCGATGCCAATGTATTAAACGTGG
1 TCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGG
* * * * * *
14334430 TCTTACTCGCGCACACATATTGAAATCATATATCGATGCTAACGTATTAAACATGG
1 TCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGG
* * * *
14334486 TCTTACTCGCACACACATATCAGAATCAAATATCGATGCCAATGTATTAAATGTGG
1 TCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGG
14334542 TCTTACTCG
1 TCTTACTCG
14334551 TAGTCACATA
Statistics
Matches: 252, Mismatches: 37, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
56 252 1.00
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.29
Consensus pattern (56 bp):
TCTTACTCGCACACACATATCGGAATCACATATCGATGCCAACGTATTAAACGTGG
Found at i:14334585 original size:43 final size:43
Alignment explanation
Indices: 14334538--14334819 Score: 420
Period size: 43 Copynumber: 6.6 Consensus size: 43
14334528 TGTATTAAAT
* *
14334538 GTGGTCTTACTCGTAGTCACATATCGATGCCAACGTCCCAGAC
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
14334581 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
* * *
14334624 ATGGTCTTACATGTAATCACATATCAATGCCAACGTCCCAGAC
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
* * * *
14334667 GTGGTCTCACACATAATCCCATATCGATGCCAACGTCCTAGAC
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
* * * *
14334710 GTGCTCTTACACGTAATCACATATCGATGCTAGCATCCCAGAC
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
* * *
14334753 GTGTTCTTACACATAATCACATATCGATGCCAACGTCCAAGAC
1 GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
14334796 GTGGTCTTACACGTAATCACATAT
1 GTGGTCTTACACGTAATCACATAT
14334820 AAAAAATCCT
Statistics
Matches: 211, Mismatches: 28, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
43 211 1.00
ACGTcount: A:0.29, C:0.29, G:0.17, T:0.26
Consensus pattern (43 bp):
GTGGTCTTACACGTAATCACATATCGATGCCAACGTCCCAGAC
Found at i:14336284 original size:27 final size:23
Alignment explanation
Indices: 14336244--14336313 Score: 77
Period size: 25 Copynumber: 2.8 Consensus size: 23
14336234 CGTTCTGACC
*
14336244 TACAGCTTGTGAGCGTATATCGATT
1 TACAGCTTGTGAGC--ATACCGATT
14336269 TACAGCTCATGTGAGCATACCGATT
1 TACAGCT--TGTGAGCATACCGATT
14336294 TACAGCTTGTGTGAGCATAC
1 TACAGC-T-TGTGAGCATAC
14336314 ATATACAAGA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
25 32 0.80
26 1 0.03
27 7 0.17
ACGTcount: A:0.26, C:0.20, G:0.23, T:0.31
Consensus pattern (23 bp):
TACAGCTTGTGAGCATACCGATT
Found at i:14336320 original size:23 final size:25
Alignment explanation
Indices: 14336264--14336320 Score: 64
Period size: 25 Copynumber: 2.4 Consensus size: 25
14336254 GAGCGTATAT
*
14336264 CGATTTACAGCTCATGTGAGCATAC
1 CGATATACAGCTCATGTGAGCATAC
* **
14336289 CGATTTACAGCTTGTGTGAGCATA-
1 CGATATACAGCTCATGTGAGCATAC
14336313 C-ATATACA
1 CGATATACA
14336321 AGATTTGACA
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
23 6 0.21
24 1 0.03
25 22 0.76
ACGTcount: A:0.30, C:0.21, G:0.19, T:0.30
Consensus pattern (25 bp):
CGATATACAGCTCATGTGAGCATAC
Found at i:14339048 original size:40 final size:40
Alignment explanation
Indices: 14338993--14339177 Score: 291
Period size: 40 Copynumber: 4.6 Consensus size: 40
14338983 CGGATGATAA
* *
14338993 CCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATA-T
14339033 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
**
14339073 CCGGGCTAAGTCCCGAAGGCATTTGCACGAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
*
14339113 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
* *
14339153 CTGGGCTAAGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
14339178 AGCAAGTAGT
Statistics
Matches: 135, Mismatches: 9, Indels: 2
0.92 0.06 0.01
Matches are distributed among these distances:
40 134 0.99
41 1 0.01
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAT
Found at i:14339192 original size:80 final size:79
Alignment explanation
Indices: 14338989--14339209 Score: 286
Period size: 80 Copynumber: 2.8 Consensus size: 79
14338979 TATTCGGATG
* * *
14338989 ATAACCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGT-ATTATA-TCCGGGCTAAGTCCCGAAGGC
14339053 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * *
14339069 ATATCCGGGCTAAGTCCCGAAGGCATTTGCA-CGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
1 ATAACCGGGCTAAGTCCCGAAGGCATTTG-AGCAAG-TATTATATCCGGGCTAAGTCCCGAAGGC
14339133 ATTTGTGCGAGTTACT
64 ATTTGTGCGAGTTACT
* * * *
14339149 ATAACTGGGCTAAGTCCCAAAGGCATTTGAGCAAGTAGTTATATTC-GGCTAAATCCCGAAG
1 ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTA-TTATATCCGGGCTAAGTCCCGAAG
14339210 ATGATTGGGT
Statistics
Matches: 126, Mismatches: 10, Indels: 11
0.86 0.07 0.07
Matches are distributed among these distances:
79 17 0.13
80 107 0.85
81 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (79 bp):
ATAACCGGGCTAAGTCCCGAAGGCATTTGAGCAAGTATTATATCCGGGCTAAGTCCCGAAGGCAT
TTGTGCGAGTTACT
Found at i:14339477 original size:22 final size:21
Alignment explanation
Indices: 14339436--14339479 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
14339426 GAATGTGCAT
14339436 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
14339458 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
14339480 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:14353337 original size:14 final size:13
Alignment explanation
Indices: 14353312--14353345 Score: 50
Period size: 14 Copynumber: 2.5 Consensus size: 13
14353302 CTGAAATATC
14353312 AAAACAATAATTA
1 AAAACAATAATTA
14353325 AAAACACATAATTA
1 AAAACA-ATAATTA
*
14353339 AGAACAA
1 AAAACAA
14353346 GTCAAATATT
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
13 7 0.37
14 12 0.63
ACGTcount: A:0.68, C:0.12, G:0.03, T:0.18
Consensus pattern (13 bp):
AAAACAATAATTA
Found at i:14357833 original size:28 final size:28
Alignment explanation
Indices: 14357801--14357865 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
14357791 ATTTACTAGA
*
14357801 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
14357829 ATACCCCTATGTGTGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
14357857 ATACCCCTA
1 ATACCCCTA
14357866 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.09, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:14358029 original size:27 final size:27
Alignment explanation
Indices: 14357971--14358060 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
14357961 AGGAAGCTTC
14357971 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
14357999 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
14358026 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
14358055 CTGGTG
1 CTGGTG
14358061 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:14358549 original size:19 final size:19
Alignment explanation
Indices: 14358525--14358563 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14358515 GCTTACTTAT
* *
14358525 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
14358544 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
14358563 T
1 T
14358564 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:14365659 original size:28 final size:28
Alignment explanation
Indices: 14365627--14365691 Score: 103
Period size: 28 Copynumber: 2.3 Consensus size: 28
14365617 ATTTACTAGA
*
14365627 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
* *
14365655 ATACCCCTATGTGTGCAAAATGACCGTT
1 ATACCCCTATGTATGCAAAATGACCATT
14365683 ATACCCCTA
1 ATACCCCTA
14365692 GGGTTAATTT
Statistics
Matches: 34, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
28 34 1.00
ACGTcount: A:0.32, C:0.28, G:0.11, T:0.29
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:14365855 original size:27 final size:27
Alignment explanation
Indices: 14365797--14365886 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
14365787 AGGAAGCGTC
14365797 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
14365825 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
14365852 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
14365881 CTGGTG
1 CTGGTG
14365887 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:14366376 original size:19 final size:19
Alignment explanation
Indices: 14366352--14366390 Score: 51
Period size: 19 Copynumber: 2.1 Consensus size: 19
14366342 ACTTACTTAT
* *
14366352 TTTTATGGTTTTGTTTTAC
1 TTTTATGATTTTATTTTAC
*
14366371 TTTTATTATTTTATTTTAC
1 TTTTATGATTTTATTTTAC
14366390 T
1 T
14366391 ATGATGAAAA
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
19 17 1.00
ACGTcount: A:0.15, C:0.05, G:0.08, T:0.72
Consensus pattern (19 bp):
TTTTATGATTTTATTTTAC
Found at i:14371404 original size:45 final size:45
Alignment explanation
Indices: 14371335--14371512 Score: 156
Period size: 45 Copynumber: 4.0 Consensus size: 45
14371325 ATGGATTCTA
* * * *
14371335 ATATGTGTTTCCGAGTAAGACCACGTCTTGGACGTTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCATCGAT
*
14371380 ATAAT-TGTTTTCGTGTAAGACCACGTCTGGGACATTGGCATCGAT
1 AT-ATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCATCGAT
* * * *
14371425 CTATGTGGTTAT-GTGTAAGACCATGTCTAGGACATCGGCATCG-T
1 ATATGT-GTTTTCGTGTAAGACCACGTCTAGGACATTGGCATCGAT
* * *
14371469 AT-T-TG-ATTCGAGTAAGACC-CTGTCT-GAGACAGTGGCATCGAT
1 ATATGTGTTTTCGTGTAAGACCAC-GTCTAG-GACATTGGCATCGAT
14371511 AT
1 AT
14371513 GAGATAACAT
Statistics
Matches: 110, Mismatches: 16, Indels: 17
0.77 0.11 0.12
Matches are distributed among these distances:
40 2 0.02
41 25 0.23
42 4 0.04
43 1 0.01
44 4 0.04
45 68 0.62
46 6 0.05
ACGTcount: A:0.24, C:0.19, G:0.26, T:0.31
Consensus pattern (45 bp):
ATATGTGTTTTCGTGTAAGACCACGTCTAGGACATTGGCATCGAT
Found at i:14373026 original size:40 final size:40
Alignment explanation
Indices: 14372981--14373092 Score: 156
Period size: 40 Copynumber: 2.8 Consensus size: 40
14372971 ATTTCATTCA
*
14372981 CTAGCATAAATGCCTTCGGGACTTAGCCCGGATATAGTCG
1 CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCG
* *
14373021 CTAGCACAAATGCCTTC-GGATCTTAGTCCGGATGTAGTCG
1 CTAGCACAAATGCCTTCGGGA-CTTAGCCCGGATATAGTCG
*
14373061 CTTAGCACAAA-GCCTTCGGGACTTAGCTCGGA
1 C-TAGCACAAATGCCTTCGGGACTTAGCCCGGA
14373093 CATCATTTGA
Statistics
Matches: 64, Mismatches: 5, Indels: 6
0.85 0.07 0.08
Matches are distributed among these distances:
39 3 0.05
40 49 0.77
41 12 0.19
ACGTcount: A:0.24, C:0.26, G:0.25, T:0.25
Consensus pattern (40 bp):
CTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTCG
Found at i:14375842 original size:13 final size:13
Alignment explanation
Indices: 14375819--14375852 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
14375809 AAACATATTA
14375819 TAAACATTTTGTGT
1 TAAA-ATTTTGTGT
14375833 TAAAATTTTGTGT
1 TAAAATTTTGTGT
14375846 TAGAAAT
1 TA-AAAT
14375853 AATAAAATAA
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 11 0.58
14 8 0.42
ACGTcount: A:0.35, C:0.03, G:0.15, T:0.47
Consensus pattern (13 bp):
TAAAATTTTGTGT
Found at i:14377203 original size:40 final size:40
Alignment explanation
Indices: 14377155--14377320 Score: 307
Period size: 40 Copynumber: 4.2 Consensus size: 40
14377145 GGACTAAGAT
14377155 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
14377195 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
14377235 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
* *
14377275 CCGAAGGCATTTGTGCGAGTTGCTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
14377314 CCGAAGG
1 CCGAAGG
14377321 TACTTGGGTT
Statistics
Matches: 124, Mismatches: 2, Indels: 1
0.98 0.02 0.01
Matches are distributed among these distances:
39 15 0.12
40 109 0.88
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTC
Found at i:14383780 original size:45 final size:45
Alignment explanation
Indices: 14383717--14383849 Score: 144
Period size: 45 Copynumber: 3.0 Consensus size: 45
14383707 ATGGATTCTG
* * * *
14383717 ATATGTGTTTCTGAGTAAGACCACGTCTTGGACGTTGGCATCGAT
1 ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
*
14383762 ATAAT-T-GTTTTCGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
1 AT-ATGTGGTTAT-GTGTAAGACCACGTCTAGGACGTTGGCATCGAT
* * * * *
14383807 CTATGTGGTTATGTGTAAGACCATGTCTGGGACATCGGCATCG
1 ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCG
14383850 TATTTGATTT
Statistics
Matches: 74, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
44 5 0.07
45 63 0.85
46 6 0.08
ACGTcount: A:0.23, C:0.18, G:0.27, T:0.32
Consensus pattern (45 bp):
ATATGTGGTTATGTGTAAGACCACGTCTAGGACGTTGGCATCGAT
Found at i:14386293 original size:40 final size:40
Alignment explanation
Indices: 14386195--14386457 Score: 309
Period size: 40 Copynumber: 6.6 Consensus size: 40
14386185 TCCTCGTTCA
* * * ** *
14386195 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
*
14386234 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
14386274 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
14386314 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
** * *
14386354 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
* * * * *
14386394 AAGGCCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTA-ACAAC-TCGCACG
* *
14386434 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14386458 CAGCATTCAA
Statistics
Matches: 199, Mismatches: 20, Indels: 9
0.87 0.09 0.04
Matches are distributed among these distances:
39 37 0.19
40 154 0.77
41 8 0.04
ACGTcount: A:0.27, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
Found at i:14395283 original size:40 final size:40
Alignment explanation
Indices: 14395185--14395527 Score: 485
Period size: 40 Copynumber: 8.6 Consensus size: 40
14395175 TCCTCGTTCA
* * * * *
14395185 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
14395224 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14395264 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14395304 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14395344 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
14395384 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
14395424 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
14395464 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
14395504 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
14395528 CAGCATTCAA
Statistics
Matches: 280, Mismatches: 20, Indels: 7
0.91 0.07 0.02
Matches are distributed among these distances:
39 37 0.13
40 235 0.84
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:14398418 original size:20 final size:21
Alignment explanation
Indices: 14398389--14398430 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
14398379 AGCACATGTA
14398389 TTCATAAAATTTCA-AAATTT
1 TTCATAAAATTTCACAAATTT
* *
14398409 TTCATCAAATTTTACAAATTT
1 TTCATAAAATTTCACAAATTT
14398430 T
1 T
14398431 CATTTTAGTC
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 12 0.63
21 7 0.37
ACGTcount: A:0.40, C:0.12, G:0.00, T:0.48
Consensus pattern (21 bp):
TTCATAAAATTTCACAAATTT
Found at i:14399065 original size:13 final size:14
Alignment explanation
Indices: 14399036--14399063 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
14399026 ATGCCATGTG
14399036 ATAAAAAAATAAAA
1 ATAAAAAAATAAAA
14399050 ATAAAAAAATAAAA
1 ATAAAAAAATAAAA
14399064 TATATTTTGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.86, C:0.00, G:0.00, T:0.14
Consensus pattern (14 bp):
ATAAAAAAATAAAA
Found at i:14401076 original size:11 final size:12
Alignment explanation
Indices: 14401050--14401084 Score: 54
Period size: 12 Copynumber: 3.0 Consensus size: 12
14401040 AAAAATTGTG
14401050 GAAATTGAATTA
1 GAAATTGAATTA
14401062 GAAATTGAA-TA
1 GAAATTGAATTA
*
14401073 GAAATTGTATTA
1 GAAATTGAATTA
14401085 ATTAGATATA
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
11 10 0.48
12 11 0.52
ACGTcount: A:0.49, C:0.00, G:0.17, T:0.34
Consensus pattern (12 bp):
GAAATTGAATTA
Found at i:14402098 original size:32 final size:32
Alignment explanation
Indices: 14402002--14402114 Score: 131
Period size: 33 Copynumber: 3.5 Consensus size: 32
14401992 TACCTAAAAG
* *
14402002 GTACAACTGGAAAAGGAAATGTACACTGTGTGT
1 GTACAACTTGAAAAGGAAATGTACCCT-TGTGT
* * *
14402035 GTACAACTTAAAAAGGAAACGTACACTTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
14402068 GTAC-ACTTGAAAAGGAAATGTACGCCTTGTGT
1 GTACAACTTGAAAAGGAAATGTAC-CCTTGTGT
14402100 GTACAA-TGTGAAAAG
1 GTACAACT-TGAAAAG
14402115 TGGTAGCTTC
Statistics
Matches: 68, Mismatches: 9, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
32 29 0.43
33 38 0.56
34 1 0.01
ACGTcount: A:0.37, C:0.13, G:0.24, T:0.26
Consensus pattern (32 bp):
GTACAACTTGAAAAGGAAATGTACCCTTGTGT
Found at i:14404694 original size:31 final size:30
Alignment explanation
Indices: 14404644--14404759 Score: 160
Period size: 31 Copynumber: 3.8 Consensus size: 30
14404634 GGCTGTCACA
*
14404644 TGATTAGTGAAAGTGGTAGCTTCGGCTACC
1 TGATTAGTGAAAGTGGTAGCTTCAGCTACC
* * *
14404674 TGATCAGTGGAAAGTAGTAGCTTCAGCTAAC
1 TGATTAGT-GAAAGTGGTAGCTTCAGCTACC
*
14404705 TGATTAGTGAAAAGTGGTAGCTCCAGCTACC
1 TGATTAGTG-AAAGTGGTAGCTTCAGCTACC
14404736 TGATTAGTGAATAGTGGTAGCTTC
1 TGATTAGTGAA-AGTGGTAGCTTC
14404760 GACTACAAGT
Statistics
Matches: 74, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
30 10 0.14
31 64 0.86
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.29
Consensus pattern (30 bp):
TGATTAGTGAAAGTGGTAGCTTCAGCTACC
Found at i:14404916 original size:27 final size:27
Alignment explanation
Indices: 14404859--14404919 Score: 68
Period size: 27 Copynumber: 2.3 Consensus size: 27
14404849 TGAACTATGG
* * **
14404859 CAAAGTAATAAAGTGTGACAATCATGG
1 CAAAGTGATAAAGTGTGACAAACATAA
* *
14404886 CAAAGTGATATAGTGTGCCAAACATAA
1 CAAAGTGATAAAGTGTGACAAACATAA
14404913 CAAAGTG
1 CAAAGTG
14404920 TTTAGTGATC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.44, C:0.13, G:0.21, T:0.21
Consensus pattern (27 bp):
CAAAGTGATAAAGTGTGACAAACATAA
Found at i:14404992 original size:34 final size:34
Alignment explanation
Indices: 14404961--14405035 Score: 80
Period size: 34 Copynumber: 2.2 Consensus size: 34
14404951 ACCATGGTTG
*
14404961 ATCCATGGCAAAG-TGTGAAACGTAGGTATGGTAT
1 ATCCATAGC-AAGCTGTGAAACGTAGGTATGGTAT
* * * *
14404995 TTCCATATCGAGCTGTGAAACGTAGGTATGGTGT
1 ATCCATAGCAAGCTGTGAAACGTAGGTATGGTAT
*
14405029 TTCCATA
1 ATCCATA
14405036 CTGAGTTGTG
Statistics
Matches: 35, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
33 2 0.06
34 33 0.94
ACGTcount: A:0.28, C:0.15, G:0.27, T:0.31
Consensus pattern (34 bp):
ATCCATAGCAAGCTGTGAAACGTAGGTATGGTAT
Found at i:14406125 original size:21 final size:19
Alignment explanation
Indices: 14406096--14406147 Score: 50
Period size: 19 Copynumber: 2.6 Consensus size: 19
14406086 TATGTGAAGC
14406096 GAAATTTTTGTTAAATGATCT
1 GAAA-TTTTGTT-AATGATCT
* *
14406117 GTAAATTTTGGTAATGCTCT
1 G-AAATTTTGTTAATGATCT
*
14406137 GAAACTTTGTT
1 GAAATTTTGTT
14406148 TCGATGATGG
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
19 8 0.31
20 8 0.31
21 7 0.27
22 3 0.12
ACGTcount: A:0.29, C:0.08, G:0.17, T:0.46
Consensus pattern (19 bp):
GAAATTTTGTTAATGATCT
Found at i:14416274 original size:15 final size:15
Alignment explanation
Indices: 14416254--14416283 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
14416244 AATTATAGGA
*
14416254 TTGCCATCCAGGATT
1 TTGCCATCCAAGATT
14416269 TTGCCATCCAAGATT
1 TTGCCATCCAAGATT
14416284 GCTGGGACTG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.23, C:0.27, G:0.17, T:0.33
Consensus pattern (15 bp):
TTGCCATCCAAGATT
Found at i:14427956 original size:30 final size:29
Alignment explanation
Indices: 14427913--14427976 Score: 110
Period size: 30 Copynumber: 2.2 Consensus size: 29
14427903 CAAGTAGCTG
14427913 AAGCTAGTTAAATCGCACACTTAGTGCCA
1 AAGCTAGTTAAATCGCACACTTAGTGCCA
*
14427942 AAGCTAGTTTAAATCGCACACTTAGTGTCA
1 AAGCTAG-TTAAATCGCACACTTAGTGCCA
14427972 AAGCT
1 AAGCT
14427977 TCCGATTCAT
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
29 7 0.21
30 26 0.79
ACGTcount: A:0.34, C:0.22, G:0.17, T:0.27
Consensus pattern (29 bp):
AAGCTAGTTAAATCGCACACTTAGTGCCA
Found at i:14432415 original size:44 final size:44
Alignment explanation
Indices: 14432365--14432457 Score: 168
Period size: 44 Copynumber: 2.1 Consensus size: 44
14432355 GTAACTTGGC
14432365 ATGTGGATTGGATATATGTTAGTTAATACATGCATTTGGAAGTG
1 ATGTGGATTGGATATATGTTAGTTAATACATGCATTTGGAAGTG
* *
14432409 CTGTGGATTGGATATATGTTAGTTAATACATGTATTTGGAAGTG
1 ATGTGGATTGGATATATGTTAGTTAATACATGCATTTGGAAGTG
14432453 ATGTG
1 ATGTG
14432458 TTTAATAATT
Statistics
Matches: 46, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
44 46 1.00
ACGTcount: A:0.28, C:0.04, G:0.28, T:0.40
Consensus pattern (44 bp):
ATGTGGATTGGATATATGTTAGTTAATACATGCATTTGGAAGTG
Found at i:14433070 original size:27 final size:27
Alignment explanation
Indices: 14433039--14433216 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
14433029 TAAATTGTAC
14433039 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
14433066 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14433092 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
14433120 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
14433148 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
14433175 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
14433202 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
14433217 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:14433153 original size:82 final size:81
Alignment explanation
Indices: 14433040--14433195 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
14433030 AAATTGTACA
* *
14433040 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
14433104 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
14433121 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
14433186 TGCGAGTTGA
65 TGCGAATTGA
14433196 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:14433207 original size:82 final size:81
Alignment explanation
Indices: 14433036--14433216 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
14433026 GATTAAATTG
* *
14433036 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
14433101 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
14433117 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
14433181 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
14433199 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
14433217 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:14440999 original size:34 final size:34
Alignment explanation
Indices: 14440950--14441032 Score: 98
Period size: 34 Copynumber: 2.4 Consensus size: 34
14440940 TTGTACTAAA
* * *
14440950 ATGGGCTAAGGCCCACACTGATACTGTTACTG-T
1 ATGGGTTAAGGCCCACACAGATACTGTGACTGAT
*
14440983 ATTGGGTTAAGGCCCACAGAGATACTGTGACTGAT
1 A-TGGGTTAAGGCCCACACAGATACTGTGACTGAT
14441018 ATGGGCTT-AGGCCCA
1 ATGGG-TTAAGGCCCA
14441033 GACTATTCAA
Statistics
Matches: 43, Mismatches: 4, Indels: 5
0.83 0.08 0.10
Matches are distributed among these distances:
33 1 0.02
34 38 0.88
35 4 0.09
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (34 bp):
ATGGGTTAAGGCCCACACAGATACTGTGACTGAT
Found at i:14465378 original size:22 final size:23
Alignment explanation
Indices: 14465344--14465390 Score: 78
Period size: 22 Copynumber: 2.1 Consensus size: 23
14465334 AAGGTTTTGA
*
14465344 GATTTGGCAAAAAAGGGCAAGTT
1 GATTTAGCAAAAAAGGGCAAGTT
14465367 GATTTAGC-AAAAAGGGCAAGTT
1 GATTTAGCAAAAAAGGGCAAGTT
14465389 GA
1 GA
14465391 GTCCTTGTTT
Statistics
Matches: 23, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
22 16 0.70
23 7 0.30
ACGTcount: A:0.40, C:0.09, G:0.30, T:0.21
Consensus pattern (23 bp):
GATTTAGCAAAAAAGGGCAAGTT
Found at i:14472824 original size:25 final size:25
Alignment explanation
Indices: 14472790--14472852 Score: 126
Period size: 25 Copynumber: 2.5 Consensus size: 25
14472780 CCTCCTTAGC
14472790 AAAAATAAAAATAAATTTATTTTTT
1 AAAAATAAAAATAAATTTATTTTTT
14472815 AAAAATAAAAATAAATTTATTTTTT
1 AAAAATAAAAATAAATTTATTTTTT
14472840 AAAAATAAAAATA
1 AAAAATAAAAATA
14472853 TTAATAAAAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 38 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (25 bp):
AAAAATAAAAATAAATTTATTTTTT
Found at i:14473766 original size:37 final size:37
Alignment explanation
Indices: 14473725--14473801 Score: 118
Period size: 37 Copynumber: 2.1 Consensus size: 37
14473715 TATCATTTTT
* ***
14473725 TAAAATTAAATTGATATTGTATTATGTTTAAACTTTG
1 TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
14473762 TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
1 TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
14473799 TAA
1 TAA
14473802 TCATAATATT
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.44
Consensus pattern (37 bp):
TAAAATTAAATGGATACACTATTATGTTTAAACTTTG
Found at i:14476872 original size:26 final size:26
Alignment explanation
Indices: 14476827--14476878 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
14476817 ACTAAATTTG
14476827 ATTTTTATAATTTAATTTAATTTAAA
1 ATTTTTATAATTTAATTTAATTTAAA
14476853 ATTTTT-T-ATTTATATGTTAATTTAAA
1 ATTTTTATAATTTA-AT-TTAATTTAAA
14476879 CGTGTCATGT
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
24 5 0.21
25 3 0.12
26 16 0.67
ACGTcount: A:0.38, C:0.00, G:0.02, T:0.60
Consensus pattern (26 bp):
ATTTTTATAATTTAATTTAATTTAAA
Found at i:14481874 original size:20 final size:20
Alignment explanation
Indices: 14481849--14481889 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
14481839 ATAAAATCAA
14481849 TGAGCAAGAAAGATATATGC
1 TGAGCAAGAAAGATATATGC
14481869 TGAGCAAGAAAGATATATGC
1 TGAGCAAGAAAGATATATGC
14481889 T
1 T
14481890 CTAAAAGGCT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.44, C:0.10, G:0.24, T:0.22
Consensus pattern (20 bp):
TGAGCAAGAAAGATATATGC
Found at i:14484263 original size:8 final size:8
Alignment explanation
Indices: 14484250--14484298 Score: 62
Period size: 8 Copynumber: 5.8 Consensus size: 8
14484240 AAGCAATAAT
14484250 AAACAATA
1 AAACAATA
14484258 AAACAATA
1 AAACAATA
*
14484266 AAACACTA
1 AAACAATA
14484274 AAACAAAATA
1 AAAC--AATA
14484284 AAACAATA
1 AAACAATA
14484292 AGAACAA
1 A-AACAA
14484299 AATAGTAAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 5
0.84 0.05 0.12
Matches are distributed among these distances:
8 24 0.67
9 5 0.14
10 7 0.19
ACGTcount: A:0.73, C:0.14, G:0.02, T:0.10
Consensus pattern (8 bp):
AAACAATA
Found at i:14484264 original size:18 final size:17
Alignment explanation
Indices: 14484247--14484302 Score: 69
Period size: 16 Copynumber: 3.2 Consensus size: 17
14484237 ACTAAGCAAT
14484247 AATAAACAATAAAACAA
1 AATAAACAATAAAACAA
* *
14484264 TA-AAACACTAAAACAA
1 AATAAACAATAAAACAA
14484280 AATAAAACAATAAGAACAA
1 AAT-AAACAATAA-AACAA
14484299 AATA
1 AATA
14484303 GTAAAATAAT
Statistics
Matches: 32, Mismatches: 4, Indels: 5
0.78 0.10 0.12
Matches are distributed among these distances:
16 14 0.44
17 1 0.03
18 9 0.28
19 8 0.25
ACGTcount: A:0.73, C:0.12, G:0.02, T:0.12
Consensus pattern (17 bp):
AATAAACAATAAAACAA
Found at i:14484311 original size:19 final size:19
Alignment explanation
Indices: 14484250--14484302 Score: 69
Period size: 18 Copynumber: 3.0 Consensus size: 19
14484240 AAGCAATAAT
14484250 AAACAATAA-AAC--AATA
1 AAACAATAAGAACAAAATA
*
14484266 AAACACTAA-AACAAAATA
1 AAACAATAAGAACAAAATA
14484284 AAACAATAAGAACAAAATA
1 AAACAATAAGAACAAAATA
14484303 GTAAAATAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 3
0.86 0.05 0.08
Matches are distributed among these distances:
16 11 0.34
18 12 0.38
19 9 0.28
ACGTcount: A:0.74, C:0.13, G:0.02, T:0.11
Consensus pattern (19 bp):
AAACAATAAGAACAAAATA
Found at i:14484323 original size:16 final size:17
Alignment explanation
Indices: 14484298--14484372 Score: 58
Period size: 17 Copynumber: 4.7 Consensus size: 17
14484288 AATAAGAACA
14484298 AAAT-AGTAAAAT-AAT
1 AAATAAGTAAAATGAAT
14484313 AAATAAGTAAATATGAAT
1 AAATAAGTAAA-ATGAAT
14484331 -AATAAG--AAAT-AAT
1 AAATAAGTAAAATGAAT
*
14484344 -ACTAA-TAAGAATGAAAT
1 AAATAAGTAA-AATG-AAT
14484361 AAATAAGTAAAA
1 AAATAAGTAAAA
14484373 ATGGAGAAAA
Statistics
Matches: 48, Mismatches: 2, Indels: 17
0.72 0.03 0.25
Matches are distributed among these distances:
13 7 0.15
14 3 0.06
15 9 0.19
16 6 0.12
17 11 0.23
18 9 0.19
19 3 0.06
ACGTcount: A:0.65, C:0.01, G:0.09, T:0.24
Consensus pattern (17 bp):
AAATAAGTAAAATGAAT
Found at i:14493894 original size:40 final size:40
Alignment explanation
Indices: 14493840--14494037 Score: 324
Period size: 40 Copynumber: 5.0 Consensus size: 40
14493830 CGGATGTAAC
* * *
14493840 AACCAGCACAAATGCCTTCGGGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
*
14493880 AACCCGCACGAATGCCTTCGGGACTTAACCTGGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
14493920 AACCCACACGAATGCCTTCGGGACTTAACCCCGTTATAAT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
* *
14493960 AACCCGCACGAATGCCTTCGAGACTTAACCCGGTTATAGT
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
14494000 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
1 AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATA
14494038 TTTTTTTTCC
Statistics
Matches: 146, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 146 1.00
ACGTcount: A:0.28, C:0.30, G:0.19, T:0.23
Consensus pattern (40 bp):
AACCCGCACGAATGCCTTCGGGACTTAACCCGGTTATAAT
Found at i:14500052 original size:40 final size:40
Alignment explanation
Indices: 14500008--14500115 Score: 207
Period size: 40 Copynumber: 2.7 Consensus size: 40
14499998 AACCAGCACA
14500008 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
*
14500048 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCGCACG
1 AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
14500088 AATGCCTTCGGGACTTAACCCGGTTATA
1 AATGCCTTCGGGACTTAACCCGGTTATA
14500116 TTTTTTTCTA
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 67 1.00
ACGTcount: A:0.28, C:0.29, G:0.19, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGTTATAATAACCCACACG
Found at i:14501633 original size:15 final size:15
Alignment explanation
Indices: 14501613--14501643 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
14501603 GGCCCATTTC
14501613 TTGCTCTTTTTACTA
1 TTGCTCTTTTTACTA
14501628 TTGCTCTTTTTACTA
1 TTGCTCTTTTTACTA
14501643 T
1 T
14501644 CCTAAGCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.13, C:0.19, G:0.06, T:0.61
Consensus pattern (15 bp):
TTGCTCTTTTTACTA
Found at i:14503935 original size:47 final size:45
Alignment explanation
Indices: 14503828--14503949 Score: 140
Period size: 47 Copynumber: 2.6 Consensus size: 45
14503818 GGTGTGAGCT
* *
14503828 AGTGTAAGACATGTCTGGGACATGCATCGGGCACATTATGAGTGCC
1 AGTGTAAGACATGTCTGGGACATGCATCGGG-ACATTACGAGTGCA
14503874 AGTGTAAGACCATGTCTGGGACATGGCATC-GG-CATTGAGACGAGTGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCGGGACATT---ACGAGTGCA
* *
14503922 AGTGTAACACATGTCTGGGACACGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
14503950 AGCCACGAGA
Statistics
Matches: 67, Mismatches: 4, Indels: 10
0.83 0.05 0.12
Matches are distributed among these distances:
45 4 0.06
46 14 0.21
47 29 0.43
48 20 0.30
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.22
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCGGGACATTACGAGTGCA
Found at i:14503998 original size:92 final size:93
Alignment explanation
Indices: 14503828--14503999 Score: 222
Period size: 92 Copynumber: 1.8 Consensus size: 93
14503818 GGTGTGAGCT
* * * * * * * *
14503828 AGTGTAAGACATGTCTGGGACATGCATCGGGCACATTATGAGTGCCAGTGTAAGACCATGTCTGG
1 AGTGTAACACATGTCTGGGACACGCATCAGCCACATGAT-AGTGCCAGCGTAAGACCATGTCAGA
*
14503893 GACATGGCATCGGCATTGAGACGAGTGCA
65 GACATAGCATCGGCATTGAGACGAGTGCA
*
14503922 AGTGTAACACATGTCTGGGACACGCATCAGCCACGA-GAT-GTGTCAGCGTAAGACCATGTCAGA
1 AGTGTAACACATGTCTGGGACACGCATCAGCCAC-ATGATAGTGCCAGCGTAAGACCATGTCAGA
14503985 GACATAGCATCGGCA
65 GACATAGCATCGGCA
14504000 CGGACATACA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 34 0.51
94 32 0.48
95 1 0.01
ACGTcount: A:0.28, C:0.22, G:0.30, T:0.20
Consensus pattern (93 bp):
AGTGTAACACATGTCTGGGACACGCATCAGCCACATGATAGTGCCAGCGTAAGACCATGTCAGAG
ACATAGCATCGGCATTGAGACGAGTGCA
Found at i:14505736 original size:30 final size:30
Alignment explanation
Indices: 14505700--14505770 Score: 124
Period size: 30 Copynumber: 2.4 Consensus size: 30
14505690 GCCTGTAACT
*
14505700 ATGGTCATTTTGTCAAAGTTTAGGGATAAA
1 ATGGTCATTTTGTCAAAGTTTAGGGACAAA
*
14505730 ATGGTCATTTTGTCAAAGTTTAGGGGCAAA
1 ATGGTCATTTTGTCAAAGTTTAGGGACAAA
14505760 ATGGTCATTTT
1 ATGGTCATTTT
14505771 ACCGAAGATG
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.30, C:0.08, G:0.24, T:0.38
Consensus pattern (30 bp):
ATGGTCATTTTGTCAAAGTTTAGGGACAAA
Found at i:14514857 original size:19 final size:19
Alignment explanation
Indices: 14514820--14514858 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
14514810 GTTAATTCTG
*
14514820 TATATTTGCATCTGTTATC
1 TATATTTGCATCTGATATC
14514839 TATATTTGTCATCT-ATATC
1 TATATTTG-CATCTGATATC
14514858 T
1 T
14514859 GTATATGGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 13 0.72
20 5 0.28
ACGTcount: A:0.23, C:0.15, G:0.08, T:0.54
Consensus pattern (19 bp):
TATATTTGCATCTGATATC
Done.