Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 53 of 297
Found at i:18933873 original size:27 final size:27
Alignment explanation
Indices: 18933843--18934028 Score: 108
Period size: 27 Copynumber: 6.9 Consensus size: 27
18933833 CTACCCTACA
*
18933843 AGGGTATTTTGATAATTTTGTAAATCG
1 AGGGTATTTTGATAATTTTATAAATCG
*** *
18933870 AGGGTAAAATGGTAATTTTATAAATCG
1 AGGGTATTTTGATAATTTTATAAATCG
* * * * * *
18933897 AGGATACTTTGGTAATTTTACAAGTTG
1 AGGGTATTTTGATAATTTTATAAATCG
** * **
18933924 AGGGTATTTCAATAATTTTACAGGTCG
1 AGGGTATTTTGATAATTTTATAAATCG
* * *
18933951 AGGGTA-TTTCAGTAATTTCACAAATC-
1 AGGGTATTTTGA-TAATTTTATAAATCG
* * *
18933977 AGGGGTATTTTGGTAATTTTACAAA-CC
1 A-GGGTATTTTGATAATTTTATAAATCG
* *
18934004 AGGGGTATTTTGGTGATTTTATAAA
1 A-GGGTATTTTGATAATTTTATAAA
18934029 CCATTCTAGT
Statistics
Matches: 126, Mismatches: 29, Indels: 8
0.77 0.18 0.05
Matches are distributed among these distances:
26 5 0.04
27 118 0.94
28 3 0.02
ACGTcount: A:0.32, C:0.08, G:0.22, T:0.39
Consensus pattern (27 bp):
AGGGTATTTTGATAATTTTATAAATCG
Found at i:18934029 original size:27 final size:27
Alignment explanation
Indices: 18933952--18934070 Score: 115
Period size: 27 Copynumber: 4.6 Consensus size: 27
18933942 TACAGGTCGA
** * *
18933952 GGGTATTTCAGTAATTTCACAAATCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
18933979 GGGTATTTTGGTAATTTTACAAACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
* *
18934006 GGGTATTTTGGTGATTTTATAAACC--
1 GGGTATTTTGGTAATTTTACAAACCAG
* * *
18934031 ----ATTCTAGTAATTTTACATACCAG
1 GGGTATTTTGGTAATTTTACAAACCAG
18934054 GGGTATTTTGGTAATTT
1 GGGTATTTTGGTAATTT
18934071 AGTAAACTAA
Statistics
Matches: 73, Mismatches: 13, Indels: 12
0.74 0.13 0.12
Matches are distributed among these distances:
21 16 0.22
27 57 0.78
ACGTcount: A:0.29, C:0.11, G:0.20, T:0.40
Consensus pattern (27 bp):
GGGTATTTTGGTAATTTTACAAACCAG
Found at i:18948510 original size:43 final size:42
Alignment explanation
Indices: 18948401--18948511 Score: 123
Period size: 43 Copynumber: 2.6 Consensus size: 42
18948391 ATTTTGAGTA
* *
18948401 TAAGACCATGTCTGGGACATTGGCATCTTATCTGATTTCATG
1 TAAGACCATGTCTGGGACATTGGCATCATATCTGATTACATG
* * * * *
18948443 TAAGACCTTATCTGGGACAATGGCATCGATGTTTGATTACATG
1 TAAGACCATGTCTGGGACATTGGCATC-ATATCTGATTACATG
* * *
18948486 TATGACCACGTCTGGGACGTTGGCAT
1 TAAGACCATGTCTGGGACATTGGCAT
18948512 TGTATATGCT
Statistics
Matches: 55, Mismatches: 13, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
42 24 0.44
43 31 0.56
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.32
Consensus pattern (42 bp):
TAAGACCATGTCTGGGACATTGGCATCATATCTGATTACATG
Found at i:18951123 original size:30 final size:30
Alignment explanation
Indices: 18951088--18951144 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
18951078 TTTACGAGCC
*
18951088 TAGGGGTAAAAATGTAATTTTGACAAAGTT
1 TAGGGGCAAAAATGTAATTTTGACAAAGTT
* *
18951118 TAGGGGCAAAATTGTAATTTTGCCAAA
1 TAGGGGCAAAAATGTAATTTTGACAAA
18951145 ATATAATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.32
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTTTGACAAAGTT
Found at i:18955710 original size:46 final size:44
Alignment explanation
Indices: 18955621--18955739 Score: 159
Period size: 46 Copynumber: 2.6 Consensus size: 44
18955611 GTGCCAATGC
* * *
18955621 CATGTCCTAGACATGGTCTTACACTGACACATCTTGTAGCCGATG
1 CATGTCCCAGACAT-GTCTTACACTGGCACATCTCGTAGCCGATG
*
18955666 CATGTCCCAAACATGTCTTACACTGGCTTACATCTCG-AGGCCGATG
1 CATGTCCCAGACATGTCTTACACTGGC--ACATCTCGTA-GCCGATG
18955712 CATGTCCCAGACATGTCTTACACTGGCA
1 CATGTCCCAGACATGTCTTACACTGGCA
18955740 GACAAATAAC
Statistics
Matches: 66, Mismatches: 5, Indels: 7
0.85 0.06 0.09
Matches are distributed among these distances:
44 13 0.20
45 13 0.20
46 40 0.61
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (44 bp):
CATGTCCCAGACATGTCTTACACTGGCACATCTCGTAGCCGATG
Found at i:18957216 original size:27 final size:27
Alignment explanation
Indices: 18957186--18957363 Score: 241
Period size: 27 Copynumber: 6.6 Consensus size: 27
18957176 TTAGTTTACC
* *
18957186 AAATTACCAAAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
18957213 AAATTA-CTAAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
* * *
18957239 AAATTACCAAAATACCCCTGGTATGTA
1 AAATTACCAAAATACCCTTGGTTTATA
*
18957266 AAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCTTGGTTTATA
*
18957293 AAATTACCAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTTGGTTTATA
* *
18957320 AAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCTTGGTTTATA
*
18957347 AAATTACCGAAATACCC
1 AAATTACCAAAATACCC
18957364 CTGTAGGGTA
Statistics
Matches: 130, Mismatches: 20, Indels: 2
0.86 0.13 0.01
Matches are distributed among these distances:
26 22 0.17
27 108 0.83
ACGTcount: A:0.40, C:0.21, G:0.08, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTTGGTTTATA
Found at i:18957378 original size:27 final size:27
Alignment explanation
Indices: 18957348--18957522 Score: 217
Period size: 27 Copynumber: 6.3 Consensus size: 27
18957338 TTGTTTATAA
18957348 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
18957375 AATTACCGGAATACCTACAGACCCTGTAGGGTAG
1 AATTACC-GAA-A--TAC---CCCTGTAGGGTAG
18957409 AATTACCGAAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
*
18957436 AATTACCGAAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
18957463 AATTATCGAAATACCCCTGTAGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
18957490 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
18957516 AATTACC
1 AATTACC
18957523 ATTTTGCCCC
Statistics
Matches: 131, Mismatches: 10, Indels: 15
0.84 0.06 0.10
Matches are distributed among these distances:
26 16 0.12
27 81 0.62
28 3 0.02
29 1 0.01
30 3 0.02
31 3 0.02
32 1 0.01
33 3 0.02
34 20 0.15
ACGTcount: A:0.33, C:0.21, G:0.22, T:0.23
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:18957380 original size:54 final size:54
Alignment explanation
Indices: 18957186--18957366 Score: 292
Period size: 54 Copynumber: 3.4 Consensus size: 54
18957176 TTAGTTTACC
*
18957186 AAATTACCAAAATACCCCTGGTTTGTAAAATTACT-AAATACCCTTGGCTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* * *
18957239 AAATTACCAAAATACCCCTGGTATGTAAAATTACCAAAATACCCTTGGTTTACA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
* *
18957293 AAATTACCAAAATACCCTTGGTTTGTAAAATTACTAAAATACCCTTTGTTTATA
1 AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
*
18957347 AAATTACCGAAATACCCCTG
1 AAATTACCAAAATACCCCTG
18957367 TAGGGTAGAA
Statistics
Matches: 116, Mismatches: 11, Indels: 1
0.91 0.09 0.01
Matches are distributed among these distances:
53 33 0.28
54 83 0.72
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (54 bp):
AAATTACCAAAATACCCCTGGTTTGTAAAATTACTAAAATACCCTTGGTTTATA
Found at i:18957388 original size:54 final size:54
Alignment explanation
Indices: 18957176--18957504 Score: 195
Period size: 54 Copynumber: 6.0 Consensus size: 54
18957166 TTAGAATACT
** * ** * *
18957176 TTAGTTTACCAAATTACCAAAATACCCCTGGT-TTGTAAAATTA-CTAAATACCC
1 TTAGTTTATAAAATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCC
* * * * * *
18957229 TTGGCTTATAAAATTACCAAAATACCCCTGGTA-TGTAAAATTACCAAAATACCC
1 TTAGTTTATAAAATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCC
* * * * ** * **
18957283 TTGGTTTACAAAATTACCAAAATACCCTTGGT-TTGTAAAATTACTAAAATACCC
1 TTAGTTTATAAAATTACCGAAATACCCCT-GTAGGGTAGAATTACCGAAATACCC
* *
18957337 TTTGTTTATAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGGAATA-CC
1 TTAGTTTATAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCC
* * *
18957390 TACAGACCCTGTAGGGTAGAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCCC
1 T-TAG----TTTA---TAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATA-CCC
** * * * *
18957453 TATAG--GGTAGAATTATCGAAATACCCCTGTAGGGTGGAATTACCGAGATACC
1 T-TAGTTTATAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACC
18957505 TTGTGGGGTA
Statistics
Matches: 232, Mismatches: 30, Indels: 28
0.80 0.10 0.10
Matches are distributed among these distances:
53 45 0.19
54 137 0.59
58 3 0.01
61 41 0.18
63 6 0.03
ACGTcount: A:0.36, C:0.21, G:0.15, T:0.28
Consensus pattern (54 bp):
TTAGTTTATAAAATTACCGAAATACCCCTGTAGGGTAGAATTACCGAAATACCC
Found at i:18958008 original size:22 final size:22
Alignment explanation
Indices: 18957956--18958019 Score: 85
Period size: 22 Copynumber: 2.9 Consensus size: 22
18957946 TTAAAGCCTT
*
18957956 CTGATTATGGCTTTGTGTCAAC
1 CTGATTATGGCTTTGTGCCAAC
*
18957978 CT-ACATATGGCTTTGTGCCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
18958000 CTGATTATGGCTGTGTGCCA
1 CTGATTATGGCTTTGTGCCA
18958020 CACGTATTTG
Statistics
Matches: 36, Mismatches: 4, Indels: 4
0.82 0.09 0.09
Matches are distributed among these distances:
21 1 0.03
22 34 0.94
23 1 0.03
ACGTcount: A:0.19, C:0.22, G:0.23, T:0.36
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:18958209 original size:27 final size:27
Alignment explanation
Indices: 18958179--18958274 Score: 113
Period size: 27 Copynumber: 3.6 Consensus size: 27
18958169 ATTTTGTTAA
*
18958179 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
18958206 GTGGCTATGCCACAAATATCT-ATTCTG
1 GTGGCTTTGCCAC-AATATCTGTTTCTG
* *
18958233 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTTTGCCACAATATCTGTTTCTG
* *
18958260 GTGACTTTGTCACAA
1 GTGGCTTTGCCACAA
18958275 CATTTGATAA
Statistics
Matches: 58, Mismatches: 9, Indels: 4
0.82 0.13 0.06
Matches are distributed among these distances:
26 7 0.12
27 45 0.78
28 6 0.10
ACGTcount: A:0.20, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
GTGGCTTTGCCACAATATCTGTTTCTG
Found at i:18958433 original size:31 final size:31
Alignment explanation
Indices: 18958379--18958489 Score: 141
Period size: 31 Copynumber: 3.5 Consensus size: 31
18958369 TTGCATTCAC
* * * *
18958379 ATTCTGATTTTTTATTCTATTACCTGATAGTA
1 ATTCTGA-TTTTGATTCTGTTACCTGATACTG
18958411 ATTCTGATTTTGATTCTGTTACCTGATACTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
* * * *
18958442 ATTCTGATTCTGATTCTGTCACCTAATTCTG
1 ATTCTGATTTTGATTCTGTTACCTGATACTG
18958473 ATTCTGATTTTGATTCT
1 ATTCTGATTTTGATTCT
18958490 AGTTCTGATA
Statistics
Matches: 70, Mismatches: 9, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
31 63 0.90
32 7 0.10
ACGTcount: A:0.21, C:0.16, G:0.13, T:0.50
Consensus pattern (31 bp):
ATTCTGATTTTGATTCTGTTACCTGATACTG
Found at i:18958442 original size:6 final size:6
Alignment explanation
Indices: 18958411--18958498 Score: 65
Period size: 6 Copynumber: 14.3 Consensus size: 6
18958401 CCTGATAGTA
* *
18958411 ATTCTG ATTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
18958460 -TCACCTA ATTCTG ATTCTG ATTTTG ATTCT- AGTTCTG AT
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG AT
18958499 AATGTTTCTT
Statistics
Matches: 64, Mismatches: 10, Indels: 16
0.71 0.11 0.18
Matches are distributed among these distances:
5 4 0.06
6 52 0.81
7 6 0.09
8 2 0.03
ACGTcount: A:0.19, C:0.17, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:18959060 original size:121 final size:122
Alignment explanation
Indices: 18958906--18959147 Score: 396
Period size: 122 Copynumber: 2.0 Consensus size: 122
18958896 GCAACTACTG
* *
18958906 TTGTTCAAAACATCACGTATCCGCAATTGTTTTTAAATTAAGCTTTCGCAACTACC-AAAATTTT
1 TTGTTCAAAACATCACGTAACCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCTAAAATTTT
*
18958970 TACAAAGTTGTTAAGAATGTTATTCAACTGAGGTTTTGTAACAAGGTTTAAAAAGGA
66 TACAAAGTTGTTAAGAATGTTATTCAACTGAGGTTTTCTAACAAGGTTTAAAAAGGA
* ** *
18959027 TTGTTCAAAACATCACGTAACCGCAATTGTTTTTAAATTAAGCTTCCGCAACTGCCTGGATTTTT
1 TTGTTCAAAACATCACGTAACCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCTAAAATTTT
* *
18959092 TACAAAGTTGTTAATAATGTTATTCAGCTGAGGTTTTCTAACAAGGTTTAAAAAGG
66 TACAAAGTTGTTAAGAATGTTATTCAACTGAGGTTTTCTAACAAGGTTTAAAAAGG
18959148 GTACAAGTTT
Statistics
Matches: 111, Mismatches: 9, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
121 53 0.48
122 58 0.52
ACGTcount: A:0.33, C:0.15, G:0.16, T:0.36
Consensus pattern (122 bp):
TTGTTCAAAACATCACGTAACCGCAATTGTTTTTAAATTAAGCTTCCGCAACTACCTAAAATTTT
TACAAAGTTGTTAAGAATGTTATTCAACTGAGGTTTTCTAACAAGGTTTAAAAAGGA
Found at i:18960309 original size:76 final size:76
Alignment explanation
Indices: 18960183--18960335 Score: 297
Period size: 76 Copynumber: 2.0 Consensus size: 76
18960173 TATGTATTGA
18960183 ATTGAATGTAAAATGCATGCGAATTTAATAGATTGTATTTAATTACTCTATAGGTCAAGACTTGA
1 ATTGAATGTAAAATGCATGCGAATTTAATAGATTGTATTTAATTACTCTATAGGTCAAGACTTGA
18960248 ATAAAAAAGGC
66 ATAAAAAAGGC
*
18960259 ATTGAATGTCAAATGCATGCGAATTTAATAGATTGTATTTAATTACTCTATAGGTCAAGACTTGA
1 ATTGAATGTAAAATGCATGCGAATTTAATAGATTGTATTTAATTACTCTATAGGTCAAGACTTGA
18960324 ATAAAAAAGGC
66 ATAAAAAAGGC
18960335 A
1 A
18960336 ATAATCGAAG
Statistics
Matches: 76, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
76 76 1.00
ACGTcount: A:0.41, C:0.10, G:0.17, T:0.33
Consensus pattern (76 bp):
ATTGAATGTAAAATGCATGCGAATTTAATAGATTGTATTTAATTACTCTATAGGTCAAGACTTGA
ATAAAAAAGGC
Found at i:18961922 original size:21 final size:21
Alignment explanation
Indices: 18961898--18961962 Score: 57
Period size: 19 Copynumber: 3.2 Consensus size: 21
18961888 GCCTTGAGCA
18961898 ATTTTGACTTGTTTGAAAATC
1 ATTTTGACTTGTTTGAAAATC
* *
18961919 ATTTTGA--TGTGCT-AAAATG
1 ATTTTGACTTGT-TTGAAAATC
* *
18961938 ATTTTAACTTGATTG-AAATC
1 ATTTTGACTTGTTTGAAAATC
18961958 ATTTT
1 ATTTT
18961963 CACTACTTGA
Statistics
Matches: 34, Mismatches: 6, Indels: 9
0.69 0.12 0.18
Matches are distributed among these distances:
19 14 0.41
20 11 0.32
21 9 0.26
ACGTcount: A:0.31, C:0.08, G:0.14, T:0.48
Consensus pattern (21 bp):
ATTTTGACTTGTTTGAAAATC
Found at i:18962805 original size:89 final size:89
Alignment explanation
Indices: 18962654--18962833 Score: 306
Period size: 89 Copynumber: 2.0 Consensus size: 89
18962644 AAAATAGATA
*
18962654 GCTTAGTGTTCATGTCTTCCCTATGAGATCGAACCTCTTCTTAAAGACCTCGAACATCATTGCTC
1 GCTTAGAGTTCATGTCTTCCCTATGAGATCGAACCTCTTCTTAAAGACCTCGAACATCATTGCTC
*
18962719 AAAGAGTGAATGGCATCAATTATG
66 AAAGAGTGAATGGCATCAAGTATG
* * * *
18962743 GCTTAGAGTTCATTTCTTCCCTATGAGATCGAACCTCTTTTTGAAGACTTCGAACATCATTGCTC
1 GCTTAGAGTTCATGTCTTCCCTATGAGATCGAACCTCTTCTTAAAGACCTCGAACATCATTGCTC
18962808 AAAGAGTGAATGGCATCAAGTATG
66 AAAGAGTGAATGGCATCAAGTATG
18962832 GC
1 GC
18962834 ACTATTAACC
Statistics
Matches: 85, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
89 85 1.00
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.32
Consensus pattern (89 bp):
GCTTAGAGTTCATGTCTTCCCTATGAGATCGAACCTCTTCTTAAAGACCTCGAACATCATTGCTC
AAAGAGTGAATGGCATCAAGTATG
Found at i:18964346 original size:82 final size:82
Alignment explanation
Indices: 18964204--18964367 Score: 310
Period size: 82 Copynumber: 2.0 Consensus size: 82
18964194 GATAGTTTTT
*
18964204 CACGAGTATCAATATTTTTAAAATGATATTGATACCAATTTGCGATTTTGTTTTCTAAGTGCAGT
1 CACGAGTATCAATATTTTTAAAATGATATTGATACCAATTTGCGATTTTGTTTTCCAAGTGCAGT
18964269 GAAAAATGAAAAATAAA
66 GAAAAATGAAAAATAAA
18964286 CACGAGTATCAATATTTTTAAAATGATATTGATACCAATTTGCGATTTTGTTTTCCAAGTGCAGT
1 CACGAGTATCAATATTTTTAAAATGATATTGATACCAATTTGCGATTTTGTTTTCCAAGTGCAGT
*
18964351 GAAAAATGTAAAATAAA
66 GAAAAATGAAAAATAAA
18964368 AAGTTTTGAG
Statistics
Matches: 80, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
82 80 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (82 bp):
CACGAGTATCAATATTTTTAAAATGATATTGATACCAATTTGCGATTTTGTTTTCCAAGTGCAGT
GAAAAATGAAAAATAAA
Found at i:18964641 original size:16 final size:15
Alignment explanation
Indices: 18964616--18964648 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 15
18964606 AGCTTTTTTT
18964616 CACAAAAAAATTAAA
1 CACAAAAAAATTAAA
18964631 CACATAAAAAATTAAA
1 CACA-AAAAAATTAAA
18964647 CA
1 CA
18964649 AATTCAAGGT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 4 0.24
16 13 0.76
ACGTcount: A:0.70, C:0.15, G:0.00, T:0.15
Consensus pattern (15 bp):
CACAAAAAAATTAAA
Found at i:18968427 original size:16 final size:16
Alignment explanation
Indices: 18968406--18968456 Score: 93
Period size: 16 Copynumber: 3.2 Consensus size: 16
18968396 TTTCTAGTAT
*
18968406 TTTATTTACTAGCGTG
1 TTTATTTACTAGCGTA
18968422 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
18968438 TTTATTTACTAGCGTA
1 TTTATTTACTAGCGTA
18968454 TTT
1 TTT
18968457 GCTCTTTCTT
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.22, C:0.12, G:0.14, T:0.53
Consensus pattern (16 bp):
TTTATTTACTAGCGTA
Found at i:18970671 original size:66 final size:66
Alignment explanation
Indices: 18970589--18970720 Score: 246
Period size: 66 Copynumber: 2.0 Consensus size: 66
18970579 TATCGTAAAG
* *
18970589 AGTAAAAGTACCAGTTATAACTTCGGGAGATGAAGCTTCGTCACGAGCTCGAATGGCGTAGGCTT
1 AGTAAAAGTACCAGTTATAACATCGGGAGATAAAGCTTCGTCACGAGCTCGAATGGCGTAGGCTT
18970654 T
66 T
18970655 AGTAAAAGTACCAGTTATAACATCGGGAGATAAAGCTTCGTCACGAGCTCGAATGGCGTAGGCTT
1 AGTAAAAGTACCAGTTATAACATCGGGAGATAAAGCTTCGTCACGAGCTCGAATGGCGTAGGCTT
18970720 T
66 T
18970721 GGCGGGTGTG
Statistics
Matches: 64, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
66 64 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (66 bp):
AGTAAAAGTACCAGTTATAACATCGGGAGATAAAGCTTCGTCACGAGCTCGAATGGCGTAGGCTT
T
Found at i:18972057 original size:44 final size:42
Alignment explanation
Indices: 18971919--18972085 Score: 131
Period size: 43 Copynumber: 3.9 Consensus size: 42
18971909 CAATGCCAAC
* * * * *
18971919 GTCCTAGACGTGGTCTTACATGTAATTCAATATC-AATGCCTCT
1 GTCCCAGACATGGTCTTACACGAAATTCAA-ATCGAA-GCCTAT
* * * * * *
18971962 GTCCCAAATAGGGTCTTACACGAAA-TCAGATACGATGCCAAT
1 GTCCCAGACATGGTCTTACACGAAATTCAAAT-CGAAGCCTAT
*
18972004 GTCCCAGACATGGTCTTACACGTAAATTTCAAATCGAAGCCTGT
1 GTCCCAGACATGGTCTTACACG-AAA-TTCAAATCGAAGCCTAT
* * *
18972048 GTCCCAGACACGGTCTTACACGATATTTCAGATCGAAG
1 GTCCCAGACATGGTCTTACACGA-AATTCAAATCGAAG
18972086 TCAACGTTCC
Statistics
Matches: 97, Mismatches: 21, Indels: 12
0.75 0.16 0.09
Matches are distributed among these distances:
41 2 0.02
42 27 0.28
43 34 0.35
44 29 0.30
45 5 0.05
ACGTcount: A:0.30, C:0.25, G:0.19, T:0.27
Consensus pattern (42 bp):
GTCCCAGACATGGTCTTACACGAAATTCAAATCGAAGCCTAT
Found at i:18972068 original size:86 final size:85
Alignment explanation
Indices: 18971911--18972070 Score: 207
Period size: 86 Copynumber: 1.9 Consensus size: 85
18971901 AACAAGTACA
* * * * *
18971911 ATGCCAACGTCCTAGACGTGGTCTTACATGTAATTCAATATCAATGCCTCTGTCCCAAATAGGGT
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAATTCAATATCAATGCCTCTGTCCCAAACACGGT
18971976 CTTACACGAAATCAGATACG
66 CTTACACGAAATCAGATACG
* * *
18971996 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATTTCAA-ATCGAA-GCCTGTGTCCCAGACAC
1 ATGCCAACGTCCCAGACATGGTCTTACACGT-AA-TTCAATATC-AATGCCTCTGTCCCAAACAC
18972059 GGTCTTACACGA
63 GGTCTTACACGA
18972071 TATTTCAGAT
Statistics
Matches: 64, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 27 0.42
86 30 0.47
87 7 0.11
ACGTcount: A:0.30, C:0.26, G:0.18, T:0.26
Consensus pattern (85 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAATTCAATATCAATGCCTCTGTCCCAAACACGGT
CTTACACGAAATCAGATACG
Found at i:18974059 original size:43 final size:43
Alignment explanation
Indices: 18974002--18974151 Score: 137
Period size: 42 Copynumber: 3.5 Consensus size: 43
18973992 AATGCCAACA
* *
18974002 TCCCAGAC-GTGGTCTTACATGTAATTCAATATCGATGCCTCTG
1 TCCCAGACAG-GGTCTTACACGTAATTCAATATCGATGCCTATG
* *
18974045 TCCCAGACAGGGTCTTACACG-AAATCAGATA-CGATGCCGATG
1 TCCCAGACAGGGTCTTACACGTAATTCA-ATATCGATGCCTATG
* * * * *
18974087 TCCTAAACATGGTCTTACACGTAAATCTCAA-ATCGAAGCCTGTG
1 TCCCAGACAGGGTCTTACACGT-AAT-TCAATATCGATGCCTATG
* *
18974131 TCCCAGAAACGGTCTTACACG
1 TCCCAGACAGGGTCTTACACG
18974152 ATATTTCAGA
Statistics
Matches: 86, Mismatches: 15, Indels: 11
0.77 0.13 0.10
Matches are distributed among these distances:
42 32 0.37
43 22 0.26
44 29 0.34
45 3 0.03
ACGTcount: A:0.29, C:0.27, G:0.19, T:0.25
Consensus pattern (43 bp):
TCCCAGACAGGGTCTTACACGTAATTCAATATCGATGCCTATG
Found at i:18974598 original size:72 final size:72
Alignment explanation
Indices: 18974481--18974624 Score: 279
Period size: 72 Copynumber: 2.0 Consensus size: 72
18974471 AACACATATT
*
18974481 TAGTGCACTTTGCATTTTAGCCCTTACATTTTCACACTTTGACAATTTAGTCCATTTTTCACAAA
1 TAGTGCACTTTGCATTTTAGCCCTTACATTTTCACACTTTGACAATTTAGTCCATTTTGCACAAA
18974546 ATCACAA
66 ATCACAA
18974553 TAGTGCACTTTGCATTTTAGCCCTTACATTTTCACACTTTGACAATTTAGTCCATTTTGCACAAA
1 TAGTGCACTTTGCATTTTAGCCCTTACATTTTCACACTTTGACAATTTAGTCCATTTTGCACAAA
18974618 ATCACAA
66 ATCACAA
18974625 ATATGAAAAA
Statistics
Matches: 71, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
72 71 1.00
ACGTcount: A:0.29, C:0.24, G:0.09, T:0.38
Consensus pattern (72 bp):
TAGTGCACTTTGCATTTTAGCCCTTACATTTTCACACTTTGACAATTTAGTCCATTTTGCACAAA
ATCACAA
Found at i:18983231 original size:93 final size:93
Alignment explanation
Indices: 18983124--18983294 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
18983114 GCCCCTAAGT
* *
18983124 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
18983189 CGAGTTCGGATGCCTAGTTACATCTCAC
66 CGAGTTCGGATGCCTAGTTACATCTCAC
* *
18983217 GAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
18983282 CGAGTTCGGATGC
66 CGAGTTCGGATGC
18983295 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:18983291 original size:46 final size:46
Alignment explanation
Indices: 18983119--18983291 Score: 217
Period size: 46 Copynumber: 3.7 Consensus size: 46
18983109 AACCCGCCCC
* * * *
18983119 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
* *
18983165 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTTACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-ATTTGCATCCA
* *
18983213 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
18983258 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
18983292 TGCTCAACCA
Statistics
Matches: 108, Mismatches: 12, Indels: 14
0.81 0.09 0.10
Matches are distributed among these distances:
43 6 0.06
44 2 0.02
45 2 0.02
46 61 0.56
47 29 0.27
48 2 0.02
49 2 0.02
50 4 0.04
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTTGCATCCA
Found at i:18993997 original size:40 final size:40
Alignment explanation
Indices: 18993914--18994136 Score: 236
Period size: 40 Copynumber: 5.6 Consensus size: 40
18993904 TTGAATGCTG
* * * * * *
18993914 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAA
** * * *
18993954 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATATTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTATTAAA
18993994 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
*
18994034 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * *
18994074 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
* * * *
18994113 ACCGAGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
18994137 TGAACGAGGA
Statistics
Matches: 161, Mismatches: 19, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
39 34 0.21
40 119 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
Found at i:19010352 original size:40 final size:40
Alignment explanation
Indices: 19010297--19010510 Score: 419
Period size: 40 Copynumber: 5.3 Consensus size: 40
19010287 NNNNNNNNNN
*
19010297 TAGCCCGGATATATCAACTTGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
19010337 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
19010377 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
19010417 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
19010457 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
1 TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
19010497 TAGCCCGGATATAT
1 TAGCCCGGATATAT
19010511 TCCAATGCTC
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
40 173 1.00
ACGTcount: A:0.23, C:0.27, G:0.20, T:0.30
Consensus pattern (40 bp):
TAGCCCGGATATATCAACTCGCATAATTGCCTTCGGGTCT
Found at i:19013835 original size:58 final size:56
Alignment explanation
Indices: 19013769--19013908 Score: 174
Period size: 56 Copynumber: 2.5 Consensus size: 56
19013759 AACGTCCCAG
*
19013769 ACGTGGTCTTACAT-GTAATCACATATATCAGAATCACATATCGATGCCAACATATTAA
1 ACGTGGTCTTAC-TCG-AA-CACATATATCAGAATCACATATCAATGCCAACATATTAA
* * * * *
19013827 ATGTGGTCTTACTCGCACACATATATCGGAATCACGTATCAATGCCAACGTATTAA
1 ACGTGGTCTTACTCGAACACATATATCAGAATCACATATCAATGCCAACATATTAA
* *
19013883 ACGTGGTCTTACTTGCACACATATAT
1 ACGTGGTCTTACTCGAACACATATAT
19013909 TGATGCCATG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
56 59 0.81
57 2 0.03
58 12 0.16
ACGTcount: A:0.34, C:0.22, G:0.14, T:0.30
Consensus pattern (56 bp):
ACGTGGTCTTACTCGAACACATATATCAGAATCACATATCAATGCCAACATATTAA
Found at i:19013872 original size:56 final size:56
Alignment explanation
Indices: 19013788--19013908 Score: 188
Period size: 56 Copynumber: 2.2 Consensus size: 56
19013778 TACATGTAAT
* *
19013788 CACATATATCAGAATCACATATCGATGCCAACATATTAAATGTGGTCTTACTCGCA
1 CACATATATCAGAATCACATATCAATGCCAACATATTAAACGTGGTCTTACTCGCA
* * * *
19013844 CACATATATCGGAATCACGTATCAATGCCAACGTATTAAACGTGGTCTTACTTGCA
1 CACATATATCAGAATCACATATCAATGCCAACATATTAAACGTGGTCTTACTCGCA
19013900 CACATATAT
1 CACATATAT
19013909 TGATGCCATG
Statistics
Matches: 59, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
56 59 1.00
ACGTcount: A:0.35, C:0.23, G:0.13, T:0.29
Consensus pattern (56 bp):
CACATATATCAGAATCACATATCAATGCCAACATATTAAACGTGGTCTTACTCGCA
Found at i:19019379 original size:11 final size:11
Alignment explanation
Indices: 19019358--19019388 Score: 53
Period size: 11 Copynumber: 2.7 Consensus size: 11
19019348 CTACAGTGTT
19019358 TTTGAAGATAGA
1 TTTG-AGATAGA
19019370 TTTGAGATAGA
1 TTTGAGATAGA
19019381 TTTGAGAT
1 TTTGAGAT
19019389 CTGGCTATTA
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
11 15 0.79
12 4 0.21
ACGTcount: A:0.35, C:0.00, G:0.26, T:0.39
Consensus pattern (11 bp):
TTTGAGATAGA
Found at i:19023833 original size:49 final size:48
Alignment explanation
Indices: 19023720--19024159 Score: 721
Period size: 49 Copynumber: 9.2 Consensus size: 48
19023710 AATTCTAAAT
*
19023720 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGAG-TATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
19023767 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
19023816 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
19023865 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
19023914 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
19023963 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
19024010 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
19024057 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-TATATA
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
* * * * * * *
19024104 TGTGACAGGGCCGAGTGGCCAACGTGATGGATGTGAAAGTGCATA-A-A
1 TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG-ATATATA
19024151 TGTGATAAG
1 TGTGATAAG
19024160 TCCCGAAGGG
Statistics
Matches: 379, Mismatches: 10, Indels: 8
0.95 0.03 0.02
Matches are distributed among these distances:
47 182 0.48
48 1 0.00
49 196 0.52
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.29
Consensus pattern (48 bp):
TGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGATATATA
Found at i:19037805 original size:42 final size:43
Alignment explanation
Indices: 19037744--19037871 Score: 145
Period size: 43 Copynumber: 3.0 Consensus size: 43
19037734 ACATAGGATC
*
19037744 CGATATGTG-TTTTAGTGTAAGACCATGTCTGGGACGTTGGCAT
1 CGATATTTGATTTT-GTGTAAGACCATGTCTGGGACGTTGGCAT
* *
19037787 C-ATATTTGATTTTGTGTAAGACCCTGTCTGGGGCCG-TGGCAT
1 CGATATTTGATTTTGTGTAAGACCATGTCT-GGGACGTTGGCAT
*** * *
19037829 CGATATTTGATTACATGTAAGACCACGTCTGGGATGTTGGCAT
1 CGATATTTGATTTTGTGTAAGACCATGTCTGGGACGTTGGCAT
19037872 TGTATGAGCT
Statistics
Matches: 71, Mismatches: 10, Indels: 8
0.80 0.11 0.09
Matches are distributed among these distances:
42 32 0.45
43 39 0.55
ACGTcount: A:0.21, C:0.16, G:0.28, T:0.34
Consensus pattern (43 bp):
CGATATTTGATTTTGTGTAAGACCATGTCTGGGACGTTGGCAT
Found at i:19043739 original size:47 final size:47
Alignment explanation
Indices: 19043604--19043740 Score: 202
Period size: 47 Copynumber: 2.9 Consensus size: 47
19043594 CCCTTCGGGA
* * * * * *
19043604 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
19043651 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
19043698 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
19043741 GATGCTCACA
Statistics
Matches: 80, Mismatches: 10, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 80 1.00
ACGTcount: A:0.27, C:0.32, G:0.09, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:19043760 original size:75 final size:75
Alignment explanation
Indices: 19043671--19043815 Score: 229
Period size: 75 Copynumber: 1.9 Consensus size: 75
19043661 ATATACACTT
*
19043671 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-TTCACATTCATCACATCG
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACA-TGTTCACATTCACCACATCG
19043735 GCCATTGATGC
65 GCCATTGATGC
* * * *
19043746 TCACATTCGTCACATTGGCCATTCGGCCTTATCACATATATACATGTTCATATTCACCACATCGG
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATGTTCACATTCACCACATCGG
19043811 CCATT
66 CCATT
19043816 AGGCCTTATC
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
74 1 0.02
75 63 0.98
ACGTcount: A:0.27, C:0.30, G:0.11, T:0.32
Consensus pattern (75 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACATGTTCACATTCACCACATCGG
CCATTGATGC
Found at i:19043813 original size:47 final size:47
Alignment explanation
Indices: 19043746--19043975 Score: 372
Period size: 47 Copynumber: 4.9 Consensus size: 47
19043736 CCATTGATGC
* * *
19043746 TCACATTCGTCACATTGGCCATTCGGCCTTATCACATATATACA-TGT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACT-T
* *
19043793 TCATATTCACCACATCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
19043840 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTC
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
19043887 TCACATTCATCACGTCGGCCATTAGGCCTTATCACATATATACACTT
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
*
19043934 TCACATTCATCACATCGGCCATTAAGCCTTATCACATATATA
1 TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATA
19043976 NNNNNNNNNN
Statistics
Matches: 170, Mismatches: 12, Indels: 2
0.92 0.07 0.01
Matches are distributed among these distances:
47 169 0.99
48 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.10, T:0.32
Consensus pattern (47 bp):
TCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTT
Found at i:19043841 original size:122 final size:122
Alignment explanation
Indices: 19043624--19043862 Score: 390
Period size: 122 Copynumber: 2.0 Consensus size: 122
19043614 TTATACACTT
* * *
19043624 TCACATCCATCACGTTGGCCACTCGGCCCTGTCACATATATACACTTTCACATTCATCACATCGG
1 TCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACACTTTCACATTCACCACATCGG
19043689 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTGATGC
66 CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTGATGC
* * * * *
19043746 TCACATTCGTCACATTGGCCATTCGGCCTTATCACATATATACA-TGTTCATATTCACCACATCG
1 TCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACACT-TTCACATTCACCACATCG
19043810 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
65 GCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATT
19043863 AGGCCTTATC
Statistics
Matches: 108, Mismatches: 8, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
121 1 0.01
122 107 0.99
ACGTcount: A:0.27, C:0.31, G:0.11, T:0.31
Consensus pattern (122 bp):
TCACATCCATCACATTGGCCACTCGGCCCTATCACATATATACACTTTCACATTCACCACATCGG
CCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATCGGCCATTGATGC
Found at i:19049601 original size:40 final size:40
Alignment explanation
Indices: 19049546--19049648 Score: 188
Period size: 40 Copynumber: 2.6 Consensus size: 40
19049536 NNNNNNNNNN
*
19049546 GGGACTTAGCCCGGATATATCACTAGCATGAATGCTCTTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
19049586 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
1 GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
*
19049626 GGGATTTAGCCCGGATATATCAC
1 GGGACTTAGCCCGGATATATCAC
19049649 GCTCAATTCT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 61 1.00
ACGTcount: A:0.25, C:0.25, G:0.23, T:0.26
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATATCACTAGCACGAATGCTCTTC
Found at i:19050881 original size:37 final size:37
Alignment explanation
Indices: 19050831--19050909 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
19050821 TTATTACGAA
* * *
19050831 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
19050868 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
19050905 GTCTT
1 GTCTT
19050910 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:19051421 original size:24 final size:23
Alignment explanation
Indices: 19051373--19051430 Score: 66
Period size: 24 Copynumber: 2.5 Consensus size: 23
19051363 TAATCAAACA
19051373 TTATTATATATATATCATATCATT
1 TTATTAT-TATATATCATATCATT
*
19051397 TTATTATTAT-TATCATTATTTATT
1 TTATTATTATATATCA-TA-TCATT
19051421 TTATT-TTATA
1 TTATTATTATA
19051431 CTTTTCAACT
Statistics
Matches: 30, Mismatches: 1, Indels: 6
0.81 0.03 0.16
Matches are distributed among these distances:
22 5 0.17
23 9 0.30
24 16 0.53
ACGTcount: A:0.33, C:0.05, G:0.00, T:0.62
Consensus pattern (23 bp):
TTATTATTATATATCATATCATT
Found at i:19053537 original size:85 final size:85
Alignment explanation
Indices: 19053408--19053586 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
19053398 TTTTTTATTG
19053408 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
19053473 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
19053493 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
19053558 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
19053578 CCCATGCTC
1 CCCATGCTC
19053587 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:19064769 original size:42 final size:42
Alignment explanation
Indices: 19064688--19064828 Score: 160
Period size: 42 Copynumber: 3.3 Consensus size: 42
19064678 TCCTAGACGT
* * *
19064688 GGTCTTACATGTAATCAAATATCGATGCCACTGTCCCAGATAG
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGA-AG
*
19064731 GGTCTTACACGAAATCAAATA-CGATGCCAATGTCCCAGACAT
1 GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGA-AG
* * *
19064773 GGTCTTACACGTAAAT-AGAAAATCGATGCCAACGTCCCAGACG
1 GGTCTTACACG-AAATCA-AATATCGATGCCAATGTCCCAGAAG
19064816 TGGTCTTACACGA
1 -GGTCTTACACGA
19064829 TATCGCATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 8
0.83 0.09 0.08
Matches are distributed among these distances:
42 30 0.35
43 27 0.32
44 28 0.33
ACGTcount: A:0.33, C:0.25, G:0.19, T:0.23
Consensus pattern (42 bp):
GGTCTTACACGAAATCAAATATCGATGCCAATGTCCCAGAAG
Found at i:19064811 original size:44 final size:43
Alignment explanation
Indices: 19064669--19064827 Score: 164
Period size: 44 Copynumber: 3.7 Consensus size: 43
19064659 TGCTCGTACA
* * * * *
19064669 ATGCTAACGTCCTAGACGTGGTCTTACATGT-AATCAAATATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAAT-AAAAATCG
* * *
19064712 ATGCC-ACTGTCCCAGATAGGGTCTTACACG-AAAT-CAAATACG
1 ATGCCAAC-GTCCCAGACATGGTCTTACACGTAAATAAAAAT-CG
*
19064754 ATGCCAATGTCCCAGACATGGTCTTACACGTAAATAGAAAATCG
1 ATGCCAACGTCCCAGACATGGTCTTACACGTAAATA-AAAATCG
*
19064798 ATGCCAACGTCCCAGACGTGGTCTTACACG
1 ATGCCAACGTCCCAGACATGGTCTTACACG
19064828 ATATCGCATA
Statistics
Matches: 95, Mismatches: 14, Indels: 13
0.78 0.11 0.11
Matches are distributed among these distances:
41 3 0.03
42 29 0.31
43 29 0.31
44 30 0.32
45 4 0.04
ACGTcount: A:0.31, C:0.25, G:0.19, T:0.24
Consensus pattern (43 bp):
ATGCCAACGTCCCAGACATGGTCTTACACGTAAATAAAAATCG
Found at i:19065643 original size:11 final size:12
Alignment explanation
Indices: 19065626--19065654 Score: 51
Period size: 11 Copynumber: 2.5 Consensus size: 12
19065616 CCTAGCAAGC
19065626 ATTTTCTTTTCT
1 ATTTTCTTTTCT
19065638 -TTTTCTTTTCT
1 ATTTTCTTTTCT
19065649 ATTTTC
1 ATTTTC
19065655 GGCAATATGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
11 11 0.69
12 5 0.31
ACGTcount: A:0.07, C:0.17, G:0.00, T:0.76
Consensus pattern (12 bp):
ATTTTCTTTTCT
Found at i:19073688 original size:42 final size:42
Alignment explanation
Indices: 19073625--19073706 Score: 155
Period size: 42 Copynumber: 2.0 Consensus size: 42
19073615 ACCTCTTTGC
19073625 TGTGGTGATGTATCAAATTGGTACAACCCTTTATGGATGTGT
1 TGTGGTGATGTATCAAATTGGTACAACCCTTTATGGATGTGT
*
19073667 TGTGGTGATGTATCAACTTGGTACAACCCTTTATGGATGT
1 TGTGGTGATGTATCAAATTGGTACAACCCTTTATGGATGT
19073707 CACCCACCAA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
42 39 1.00
ACGTcount: A:0.23, C:0.13, G:0.26, T:0.38
Consensus pattern (42 bp):
TGTGGTGATGTATCAAATTGGTACAACCCTTTATGGATGTGT
Found at i:19076038 original size:38 final size:40
Alignment explanation
Indices: 19075989--19076115 Score: 132
Period size: 38 Copynumber: 3.0 Consensus size: 40
19075979 TAATGAATCA
19075989 ATATATGTAACCGTGGCATATCCACTTAGCACCACATTAC
1 ATATATGTAACCGTGGCATATCCACTTAGCACCACATTAC
* * * *
19076029 AT-T-TTTAACCCTGGTATATCCACTTAGCACCACGTTAATGAATC
1 ATATATGTAACCGTGGCATATCCACTTAGCACCAC----AT-TA-C
*
19076073 AATATATGTAACCGTGGCATATCCACTTAGCACCACGTTAC
1 -ATATATGTAACCGTGGCATATCCACTTAGCACCACATTAC
19076114 AT
1 AT
19076116 GTATCAATAT
Statistics
Matches: 69, Mismatches: 9, Indels: 18
0.72 0.09 0.19
Matches are distributed among these distances:
38 27 0.39
39 1 0.01
40 4 0.06
41 1 0.01
42 3 0.04
43 2 0.03
44 1 0.01
45 2 0.03
46 1 0.01
47 27 0.39
ACGTcount: A:0.31, C:0.26, G:0.13, T:0.30
Consensus pattern (40 bp):
ATATATGTAACCGTGGCATATCCACTTAGCACCACATTAC
Found at i:19076143 original size:48 final size:48
Alignment explanation
Indices: 19076034--19076167 Score: 189
Period size: 48 Copynumber: 2.8 Consensus size: 48
19076024 ATTACATTTT
* *
19076034 TAACCCTGGTATATCCACTTAGCACCACGTTA-ATGAATCAATATATG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
19076081 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATTTG
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * *
19076129 TAATCATTGTATATCCACTTAGCACCACGTTACACGTAT
1 TAACCATGGTATATCCACTTAGCACCACGTTACATGTAT
19076168 AACCCTGGTA
Statistics
Matches: 77, Mismatches: 9, Indels: 1
0.89 0.10 0.01
Matches are distributed among these distances:
47 30 0.39
48 47 0.61
ACGTcount: A:0.31, C:0.25, G:0.13, T:0.31
Consensus pattern (48 bp):
TAACCATGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:19082232 original size:38 final size:38
Alignment explanation
Indices: 19082189--19082357 Score: 176
Period size: 38 Copynumber: 4.2 Consensus size: 38
19082179 TTTCAAATTA
19082189 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
* * * *
19082227 ACATGTTTAACTGTGGTATATCCACTTAGCACCACGTTAATGA
1 ACATGTATAACCGTGGCATATCCACTTAGCACCAC----AT-T
* *
19082270 ATCAATATATGTAACCGTGGCATATCCACTTAGCGCCACATT
1 A-C-ATGTA--TAACCGTGGCATATCCACTTAGCACCACATT
* * *
19082312 ACATGTTTAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
19082350 ACATGTAT
1 ACATGTAT
19082358 CAATATGTGT
Statistics
Matches: 106, Mismatches: 16, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
38 67 0.63
40 3 0.03
41 1 0.01
42 3 0.03
43 3 0.03
44 1 0.01
45 3 0.03
47 25 0.24
ACGTcount: A:0.30, C:0.25, G:0.15, T:0.30
Consensus pattern (38 bp):
ACATGTATAACCGTGGCATATCCACTTAGCACCACATT
Found at i:19082293 original size:85 final size:86
Alignment explanation
Indices: 19082196--19082403 Score: 328
Period size: 85 Copynumber: 2.4 Consensus size: 86
19082186 TTAACATGTA
*
19082196 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACTGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
19082261 CGTTA-ATGAATCAATATATG
66 CGTTACATGAATCAATATATG
*
19082281 TAACCGTGGCATATCCACTTAGCGCCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
* *
19082346 CGTTACATGTATCAATATGTG
66 CGTTACATGAATCAATATATG
* * * * *
19082367 TAATCGTGGTATATCCGCTTAGCACCACGTCACATGT
1 TAACCGTGGCATATCCACTTAGCACCACATTACATGT
19082404 ATCAATATGT
Statistics
Matches: 112, Mismatches: 10, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
85 68 0.61
86 44 0.39
ACGTcount: A:0.29, C:0.25, G:0.16, T:0.30
Consensus pattern (86 bp):
TAACCGTGGCATATCCACTTAGCACCACATTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTACATGAATCAATATATG
Found at i:19082379 original size:48 final size:48
Alignment explanation
Indices: 19082314--19082453 Score: 226
Period size: 48 Copynumber: 2.9 Consensus size: 48
19082304 GCCACATTAC
* *
19082314 ATGTTTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
19082362 ATGTGTAATCGTGGTATATCCGCTTAGCACCACGTCACATGTATCAAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
19082410 ATGTGTAATCGTTGTATATCCACTTAGCACCACGTTACACGTAT
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTAT
19082454 AATCGTGGTA
Statistics
Matches: 84, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
48 84 1.00
ACGTcount: A:0.28, C:0.23, G:0.16, T:0.33
Consensus pattern (48 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:19084518 original size:12 final size:12
Alignment explanation
Indices: 19084501--19084533 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
19084491 AAGTCTATGG
19084501 GAAAGGAAATGA
1 GAAAGGAAATGA
*
19084513 GAAAGGGAATGA
1 GAAAGGAAATGA
19084525 G-AAGGAAAT
1 GAAAGGAAAT
19084534 TCAATTACTA
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
11 7 0.37
12 12 0.63
ACGTcount: A:0.55, C:0.00, G:0.36, T:0.09
Consensus pattern (12 bp):
GAAAGGAAATGA
Found at i:19084997 original size:10 final size:10
Alignment explanation
Indices: 19084984--19085013 Score: 51
Period size: 10 Copynumber: 3.0 Consensus size: 10
19084974 TAAAAATTAG
19084984 AAAATTATAA
1 AAAATTATAA
19084994 AAAATTATAA
1 AAAATTATAA
*
19085004 AAAATCATAA
1 AAAATTATAA
19085014 CTTGTTTTTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.70, C:0.03, G:0.00, T:0.27
Consensus pattern (10 bp):
AAAATTATAA
Found at i:19090720 original size:42 final size:42
Alignment explanation
Indices: 19090661--19090764 Score: 181
Period size: 42 Copynumber: 2.5 Consensus size: 42
19090651 ACTAAGCCTA
*
19090661 CGTGTAAGACCATATCTGGGATATGGCATCAGTATGAAACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCAATATGAAACTT
*
19090703 CGTGTAAGACCATATCTGGGATATGGCATCAATATGAGACTT
1 CGTGTAAGACCATATCTGGGATATGGCATCAATATGAAACTT
*
19090745 CGTGTAAGACCATAACTGGG
1 CGTGTAAGACCATATCTGGG
19090765 CTATTAGCAT
Statistics
Matches: 59, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (42 bp):
CGTGTAAGACCATATCTGGGATATGGCATCAATATGAAACTT
Found at i:19095676 original size:40 final size:40
Alignment explanation
Indices: 19095576--19095840 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
19095566 GCTCCTCGTT
* * * *
19095576 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
19095616 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
19095655 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
19095695 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
19095735 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
19095775 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
19095816 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
19095841 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:19095800 original size:80 final size:80
Alignment explanation
Indices: 19095543--19095840 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
19095533 AAATCACGTA
* ** * * *
19095543 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
19095605 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
19095621 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
19095684 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
19095701 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
19095765 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
19095781 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
19095841 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:19095849 original size:41 final size:41
Alignment explanation
Indices: 19095772--19095849 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
19095762 TTTGTATCTC
* * *
19095772 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
19095813 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
19095850 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:19103944 original size:44 final size:43
Alignment explanation
Indices: 19103838--19103965 Score: 161
Period size: 42 Copynumber: 3.0 Consensus size: 43
19103828 GTAATTTAGT
* * *
19103838 ATCGATGCCTCTGTCCCAGACAGGGTCTTACACGAAA--TCAG
1 ATCGATGCCTATGTCCCAGACATGGTCTTACACGAAATCTCAA
*
19103879 ATACGATGCCTATGTCCCAGACATAGTCTTACACGTAAATCTCAA
1 AT-CGATGCCTATGTCCCAGACATGGTCTTACACG-AAATCTCAA
* * *
19103924 ATCGAGGCCTGTGTCCCAGACATGGTCTTACACGATATCTCA
1 ATCGATGCCTATGTCCCAGACATGGTCTTACACGAAATCTCA
19103966 GATTAGTGTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
41 2 0.03
42 29 0.39
43 10 0.13
44 29 0.39
45 5 0.07
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.25
Consensus pattern (43 bp):
ATCGATGCCTATGTCCCAGACATGGTCTTACACGAAATCTCAA
Found at i:19109976 original size:48 final size:48
Alignment explanation
Indices: 19109920--19110137 Score: 266
Period size: 48 Copynumber: 4.6 Consensus size: 48
19109910 TGAGATTCCA
*
19109920 TGTAAGACCATG-CTTGGGACATGGCATCGGGGATGATATATGTGCCTG
1 TGTAAGACCATGTC-TGGGACATGGCATCGGCGATGATATATGTGCCTG
**
19109968 TGTAAGACCATGTCTGGGACATGGCATCAACGATGATATATGTG-CTAG
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT-G
*
19110016 TGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCAT-
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCC-TG
** * ** *
19110064 CATAAGACCATGTCTGGGACAT-GCATTGGCGATGATATATG-GAATCA
1 TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCT-G
*
19110111 TGTAAGACCATGTCTAGGACATGGCAT
1 TGTAAGACCATGTCTGGGACATGGCAT
19110138 TGGTACTTTA
Statistics
Matches: 148, Mismatches: 15, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
45 1 0.01
46 1 0.01
47 38 0.26
48 105 0.71
49 2 0.01
50 1 0.01
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (48 bp):
TGTAAGACCATGTCTGGGACATGGCATCGGCGATGATATATGTGCCTG
Found at i:19110084 original size:96 final size:95
Alignment explanation
Indices: 19109918--19110137 Score: 295
Period size: 96 Copynumber: 2.3 Consensus size: 95
19109908 AATGAGATTC
**
19109918 CATGTAAGACCATG-CTTGGGACATGGCATCGGGGATGATATATGTGCCTGTGTAAGACCATGTC
1 CATGTAAGACCATGTC-TGGGACATGGCATCGGGGATGATATATGTGCCTGCATAAGACCATGTC
*
19109982 TGGGACATGGCATCAACGATGATATATGTG-CT
65 TGGGACAT-GCATCAACGATGATATATG-GAAT
*
19110014 -AGTGTAAGACCATGTCTGGGACATGGCATCGGTGATGATATATGTGCCAT-CATAAGACCATGT
1 CA-TGTAAGACCATGTCTGGGACATGGCATCGGGGATGATATATGTGCC-TGCATAAGACCATGT
***
19110077 CTGGGACATGCATTGGCGATGATATATGGAAT
64 CTGGGACATGCATCAACGATGATATATGGAAT
*
19110109 CATGTAAGACCATGTCTAGGACATGGCAT
1 CATGTAAGACCATGTCTGGGACATGGCAT
19110138 TGGTACTTTA
Statistics
Matches: 111, Mismatches: 8, Indels: 11
0.85 0.06 0.08
Matches are distributed among these distances:
94 1 0.01
95 44 0.40
96 64 0.58
97 2 0.02
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.27
Consensus pattern (95 bp):
CATGTAAGACCATGTCTGGGACATGGCATCGGGGATGATATATGTGCCTGCATAAGACCATGTCT
GGGACATGCATCAACGATGATATATGGAAT
Found at i:19111096 original size:12 final size:12
Alignment explanation
Indices: 19111076--19111107 Score: 55
Period size: 12 Copynumber: 2.7 Consensus size: 12
19111066 AAAATTTGTC
*
19111076 CACATGGGTAGA
1 CACACGGGTAGA
19111088 CACACGGGTAGA
1 CACACGGGTAGA
19111100 CACACGGG
1 CACACGGG
19111108 CATGTGTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 19 1.00
ACGTcount: A:0.31, C:0.25, G:0.34, T:0.09
Consensus pattern (12 bp):
CACACGGGTAGA
Found at i:19129994 original size:47 final size:46
Alignment explanation
Indices: 19129842--19130016 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
19129832 CCTCTATCGA
* * *
19129842 GGCC-AACGCATGTCCCGGACATGTCTTACTCTGGCACTCATAATAT
1 GGCCGAAC-CATGTCCCAGACATGTCTTACACTGGCACTCATAATGT
* * * * * *
19129888 GGCTGAACCATGTCCCAAACATGTCTTACACTAGCCCTCGT-CTAGAT
1 GGCCGAACCATGTCCCAGACATGTCTTACACTGGCACTCATAAT-G-T
*
19129935 -GCC-AATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGT
1 GGCCGAA--CCATGTCCCAGACAT-GTCTTACACTGGCACTCATAATGT
*
19129982 GGCCGAAACATGTCCCAGACATGTCTTACACTGGC
1 GGCCGAACCATGTCCCAGACATGTCTTACACTGGC
19130017 GCACAAATCA
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
45 3 0.03
46 45 0.43
47 33 0.32
48 20 0.19
49 3 0.03
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (46 bp):
GGCCGAACCATGTCCCAGACATGTCTTACACTGGCACTCATAATGT
Found at i:19130817 original size:47 final size:46
Alignment explanation
Indices: 19130665--19130839 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 46
19130655 CCTCTATCGA
* * *
19130665 GGCC-AACGCATGTCCCGGACATGTCTTACTCTGGCACTCATAATAT
1 GGCCGAAC-CATGTCCCAGACATGTCTTACACTGGCACTCATAATGT
* * * * * *
19130711 GGCTGAACCATGTCCCAAACATGTCTTACACTAGCCCTCGT-CTAGAT
1 GGCCGAACCATGTCCCAGACATGTCTTACACTGGCACTCATAAT-G-T
*
19130758 -GCC-AATGCCATGTCCCAGACATAGTCTTACACTGGCTCTCATAATGT
1 GGCCGAA--CCATGTCCCAGACAT-GTCTTACACTGGCACTCATAATGT
*
19130805 GGCCGAAACATGTCCCAGACATGTCTTACACTGGC
1 GGCCGAACCATGTCCCAGACATGTCTTACACTGGC
19130840 GCACAAATCA
Statistics
Matches: 104, Mismatches: 16, Indels: 18
0.75 0.12 0.13
Matches are distributed among these distances:
45 3 0.03
46 45 0.43
47 33 0.32
48 20 0.19
49 3 0.03
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (46 bp):
GGCCGAACCATGTCCCAGACATGTCTTACACTGGCACTCATAATGT
Found at i:19131036 original size:823 final size:823
Alignment explanation
Indices: 19129690--19131336 Score: 3294
Period size: 823 Copynumber: 2.0 Consensus size: 823
19129680 AACCTTCAAC
19129690 ATTGGATAAATTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATGCATGCT
1 ATTGGATAAATTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATGCATGCT
19129755 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCCTATCCGATGCGTGTCCCAGACACAAT
66 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCCTATCCGATGCGTGTCCCAGACACAAT
19129820 TTACACTAGCTACCTCTATCGAGGCCAACGCATGTCCCGGACATGTCTTACTCTGGCACTCATAA
131 TTACACTAGCTACCTCTATCGAGGCCAACGCATGTCCCGGACATGTCTTACTCTGGCACTCATAA
19129885 TATGGCTGAACCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTAGATGCCAATGCCATGTCC
196 TATGGCTGAACCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTAGATGCCAATGCCATGTCC
19129950 CAGACATAGTCTTACACTGGCTCTCATAATGTGGCCGAAACATGTCCCAGACATGTCTTACACTG
261 CAGACATAGTCTTACACTGGCTCTCATAATGTGGCCGAAACATGTCCCAGACATGTCTTACACTG
19130015 GCGCACAAATCACCCAATGTCTTGGCACGAATATCCAGTTCATATCCTAAGGTTTCAACGGGATA
326 GCGCACAAATCACCCAATGTCTTGGCACGAATATCCAGTTCATATCCTAAGGTTTCAACGGGATA
19130080 TTTCTACTATCTCAAATATTATAAGGCATTCTCAATTATAACTTAACAATTCGTACAATATCAAT
391 TTTCTACTATCTCAAATATTATAAGGCATTCTCAATTATAACTTAACAATTCGTACAATATCAAT
19130145 TCAATGACAATATGAATACAAGTATTAACAATTTAGTTGTATTATTTACATACAACTTACCTCGG
456 TCAATGACAATATGAATACAAGTATTAACAATTTAGTTGTATTATTTACATACAACTTACCTCGG
19130210 ATTACAAAAAGTGCTTGACTAGACAGCTTAATTGGATTGCTTGGCTTTGCCTCGGTCTAGGCTCA
521 ATTACAAAAAGTGCTTGACTAGACAGCTTAATTGGATTGCTTGGCTTTGCCTCGGTCTAGGCTCA
19130275 GTTTTGGCAAATCTTGATCTATATTAACAACATACATCCATTTAGTCACTAAACACAATTAAGCA
586 GTTTTGGCAAATCTTGATCTATATTAACAACATACATCCATTTAGTCACTAAACACAATTAAGCA
19130340 TTCATAAATTCACAACTTTGGTAAAATGACCATTTTGCCCTTAGGCCTTGGCAAAATGACCATTT
651 TTCATAAATTCACAACTTTGGTAAAATGACCATTTTGCCCTTAGGCCTTGGCAAAATGACCATTT
19130405 TACCCCTATGTCCGAAAATCAATTTTTATCGAATTTATTCGTATTTCAAGATTATCTAAACTCTT
716 TACCCCTATGTCCGAAAATCAATTTTTATCGAATTTATTCGTATTTCAAGATTATCTAAACTCTT
19130470 TTTACTACTAGAGCAATCCCAAATTCTCACTATTTCACACACT
781 TTTACTACTAGAGCAATCCCAAATTCTCACTATTTCACACACT
19130513 ATTGGATAAATTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATGCATGCT
1 ATTGGATAAATTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATGCATGCT
19130578 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCCTATCCGATGCGTGTCCCAGACACAAT
66 GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCCTATCCGATGCGTGTCCCAGACACAAT
19130643 TTACACTAGCTACCTCTATCGAGGCCAACGCATGTCCCGGACATGTCTTACTCTGGCACTCATAA
131 TTACACTAGCTACCTCTATCGAGGCCAACGCATGTCCCGGACATGTCTTACTCTGGCACTCATAA
19130708 TATGGCTGAACCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTAGATGCCAATGCCATGTCC
196 TATGGCTGAACCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTAGATGCCAATGCCATGTCC
19130773 CAGACATAGTCTTACACTGGCTCTCATAATGTGGCCGAAACATGTCCCAGACATGTCTTACACTG
261 CAGACATAGTCTTACACTGGCTCTCATAATGTGGCCGAAACATGTCCCAGACATGTCTTACACTG
19130838 GCGCACAAATCACCCAATGTCTTGGCACGAATATCCAGTTCATATCCTAAGGTTTCAACGGGATA
326 GCGCACAAATCACCCAATGTCTTGGCACGAATATCCAGTTCATATCCTAAGGTTTCAACGGGATA
19130903 TTTCTACTATCTCAAATATTATAAGGCATTCTCAATTATAACTTAACAATTCGTACAATATCAAT
391 TTTCTACTATCTCAAATATTATAAGGCATTCTCAATTATAACTTAACAATTCGTACAATATCAAT
19130968 TCAATGACAATATGAATACAAGTATTAACAATTTAGTTGTATTATTTACATACAACTTACCTCGG
456 TCAATGACAATATGAATACAAGTATTAACAATTTAGTTGTATTATTTACATACAACTTACCTCGG
19131033 ATTACAAAAAGTGCTTGACTAGACAGCTTAATTGGATTGCTTGGCTTTGCCTCGGTCTAGGCTCA
521 ATTACAAAAAGTGCTTGACTAGACAGCTTAATTGGATTGCTTGGCTTTGCCTCGGTCTAGGCTCA
19131098 GTTTTGGCAAATCTTGATCTATATTAACAACATACATCCATTTAGTCACTAAACACAATTAAGCA
586 GTTTTGGCAAATCTTGATCTATATTAACAACATACATCCATTTAGTCACTAAACACAATTAAGCA
19131163 TTCATAAATTCACAACTTTGGTAAAATGACCATTTTGCCCTTAGGCCTTGGCAAAATGACCATTT
651 TTCATAAATTCACAACTTTGGTAAAATGACCATTTTGCCCTTAGGCCTTGGCAAAATGACCATTT
19131228 TACCCCTATGTCCGAAAATCAATTTTTATCGAATTTATTCGTATTTCAAGATTATCTAAACTCTT
716 TACCCCTATGTCCGAAAATCAATTTTTATCGAATTTATTCGTATTTCAAGATTATCTAAACTCTT
19131293 TTTACTACTAGAGCAATCCCAAATTCTCACTATTTCACACACT
781 TTTACTACTAGAGCAATCCCAAATTCTCACTATTTCACACACT
19131336 A
1 A
19131337 ACCACCTATT
Statistics
Matches: 824, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
823 824 1.00
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (823 bp):
ATTGGATAAATTGCCGATGCCATGTCCTAGACATGGTCTTACACTGGCTCTCATATATGCATGCT
GATGCATGTCCCAGACATGTCTTACACTAGCACAACTCCTATCCGATGCGTGTCCCAGACACAAT
TTACACTAGCTACCTCTATCGAGGCCAACGCATGTCCCGGACATGTCTTACTCTGGCACTCATAA
TATGGCTGAACCATGTCCCAAACATGTCTTACACTAGCCCTCGTCTAGATGCCAATGCCATGTCC
CAGACATAGTCTTACACTGGCTCTCATAATGTGGCCGAAACATGTCCCAGACATGTCTTACACTG
GCGCACAAATCACCCAATGTCTTGGCACGAATATCCAGTTCATATCCTAAGGTTTCAACGGGATA
TTTCTACTATCTCAAATATTATAAGGCATTCTCAATTATAACTTAACAATTCGTACAATATCAAT
TCAATGACAATATGAATACAAGTATTAACAATTTAGTTGTATTATTTACATACAACTTACCTCGG
ATTACAAAAAGTGCTTGACTAGACAGCTTAATTGGATTGCTTGGCTTTGCCTCGGTCTAGGCTCA
GTTTTGGCAAATCTTGATCTATATTAACAACATACATCCATTTAGTCACTAAACACAATTAAGCA
TTCATAAATTCACAACTTTGGTAAAATGACCATTTTGCCCTTAGGCCTTGGCAAAATGACCATTT
TACCCCTATGTCCGAAAATCAATTTTTATCGAATTTATTCGTATTTCAAGATTATCTAAACTCTT
TTTACTACTAGAGCAATCCCAAATTCTCACTATTTCACACACT
Found at i:19138546 original size:47 final size:46
Alignment explanation
Indices: 19138447--19138703 Score: 234
Period size: 45 Copynumber: 5.6 Consensus size: 46
19138437 TTCTATCGAG
* ** * * * *
19138447 TAAGACCATAGTTGAAAAACGTTATGGCATCATGAATCAAAGA--AA
1 TAAGACCATAGTTGAAAGACACTATGGCAACACG-ATGAAAAATGAA
* * *
19138492 TAAGACCATATTTGAAAGACGCTACGGCAACACGATGGAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACACGAT-GAAAAATGAA
19138539 TAAGACCATAGTTGAAAGACACTATGGCAACACGATGAAAAATGAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACACGATGAAAAATGAA
* * * * * *
19138585 TAAGACCATGGTTGAAAGACACTATGGCATCAAGACG-AGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACACGATGAAAAATGAA
* * * * * * * *
19138630 TAAGACCATGGTTGATAGACACTATGACATCAAGA-CAAGAATAAA
1 TAAGACCATAGTTGAAAGACACTATGGCAACACGATGAAAAATGAA
* *
19138675 TAAGACCATGGTTGAAAGACACCATGGCA
1 TAAGACCATAGTTGAAAGACACTATGGCA
19138704 CACTTCGATC
Statistics
Matches: 185, Mismatches: 23, Indels: 8
0.86 0.11 0.04
Matches are distributed among these distances:
44 2 0.01
45 105 0.57
46 43 0.23
47 35 0.19
ACGTcount: A:0.45, C:0.16, G:0.20, T:0.19
Consensus pattern (46 bp):
TAAGACCATAGTTGAAAGACACTATGGCAACACGATGAAAAATGAA
Found at i:19138599 original size:46 final size:46
Alignment explanation
Indices: 19138489--19138703 Score: 245
Period size: 45 Copynumber: 4.7 Consensus size: 46
19138479 TGAATCAAAG
** * * *
19138489 AAATAAGACCATATTTGAAAGACGCTACGGCAACACGATGGAAAAAT
1 AAATAAGACCATGGTTGAAAGACACTATGGCAACAAGAT-GAAAAAT
* * *
19138536 GAATAAGACCATAGTTGAAAGACACTATGGCAACACGATGAAAAAT
1 AAATAAGACCATGGTTGAAAGACACTATGGCAACAAGATGAAAAAT
* * * *
19138582 GAATAAGACCATGGTTGAAAGACACTATGGCATCAAGACG-AGAAT
1 AAATAAGACCATGGTTGAAAGACACTATGGCAACAAGATGAAAAAT
* * * * *
19138627 AAATAAGACCATGGTTGATAGACACTATGACATCAAGA-CAAGAAT
1 AAATAAGACCATGGTTGAAAGACACTATGGCAACAAGATGAAAAAT
*
19138672 AAATAAGACCATGGTTGAAAGACACCATGGCA
1 AAATAAGACCATGGTTGAAAGACACTATGGCA
19138704 CACTTCGATC
Statistics
Matches: 151, Mismatches: 16, Indels: 4
0.88 0.09 0.02
Matches are distributed among these distances:
45 73 0.48
46 43 0.28
47 35 0.23
ACGTcount: A:0.46, C:0.16, G:0.20, T:0.18
Consensus pattern (46 bp):
AAATAAGACCATGGTTGAAAGACACTATGGCAACAAGATGAAAAAT
Found at i:19145324 original size:19 final size:18
Alignment explanation
Indices: 19145302--19145341 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
19145292 TGAATAAAAC
19145302 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
19145321 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
19145339 TTA
1 TTA
19145342 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:19149384 original size:19 final size:18
Alignment explanation
Indices: 19149362--19149401 Score: 71
Period size: 19 Copynumber: 2.2 Consensus size: 18
19149352 TGAATAAAAC
19149362 TTATCTACCTAAATAAGAT
1 TTATCTACCTAAATAA-AT
19149381 TTATCTACCTAAATAAAT
1 TTATCTACCTAAATAAAT
19149399 TTA
1 TTA
19149402 AAATATATAC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 5 0.24
19 16 0.76
ACGTcount: A:0.42, C:0.15, G:0.03, T:0.40
Consensus pattern (18 bp):
TTATCTACCTAAATAAAT
Found at i:19150576 original size:21 final size:21
Alignment explanation
Indices: 19150552--19150602 Score: 102
Period size: 21 Copynumber: 2.4 Consensus size: 21
19150542 ATCCTAACTC
19150552 AATTAAAACACACTATTTTCA
1 AATTAAAACACACTATTTTCA
19150573 AATTAAAACACACTATTTTCA
1 AATTAAAACACACTATTTTCA
19150594 AATTAAAAC
1 AATTAAAAC
19150603 CTCGTAAGTA
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.51, C:0.18, G:0.00, T:0.31
Consensus pattern (21 bp):
AATTAAAACACACTATTTTCA
Found at i:19152690 original size:40 final size:40
Alignment explanation
Indices: 19152590--19152854 Score: 286
Period size: 40 Copynumber: 6.7 Consensus size: 40
19152580 GCTCCTCGTT
* * * *
19152590 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* **
19152630 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
19152669 CGAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* *
19152709 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
* * *
19152749 CAAAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAACCCGG-ATTTAGTAACTCGCA
** * * * *
19152789 CAAATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAACCCGGATTTAGTAAC-TCGCA
*
19152830 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAACCCGGA
19152855 CAGCATTCAA
Statistics
Matches: 197, Mismatches: 22, Indels: 12
0.85 0.10 0.05
Matches are distributed among these distances:
39 39 0.20
40 143 0.73
41 15 0.08
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
Found at i:19152814 original size:80 final size:80
Alignment explanation
Indices: 19152557--19152854 Score: 263
Period size: 80 Copynumber: 3.7 Consensus size: 80
19152547 AAATCACGTA
* ** * * *
19152557 CCTTCGGGATTTAA-CCGGATATAGCTC-CTCGTTCAAATGCCTTCGGGACATAGCCCGG-TTTT
1 CCTTCGGGACTTAACCCGGATATAG-TCACTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
19152619 AGTAACTCACAC-AATG
64 AATAACTCGCACAAATG
* * * *
19152635 CCTTCGGGACATAACCCGGATTTA-ACAACTCGCACGAATGCCTTCGGGACTTAACCCGG-ATTT
1 CCTTCGGGACTTAACCCGGATATAGTC-ACTCGCAC-AAAGCCTTCGGGACTTAACCCGGAATTT
*
19152698 AATAACTCGCACGAATG
64 AATAACTCGCACAAATG
* *
19152715 CCTTCGGGACTTAACCCGGATTTAGT-ATCTCGCACAAAGGCCTTCGGGGCTTAACCCGGAATTT
1 CCTTCGGGACTTAACCCGGATATAGTCA-CTCGCACAAA-GCCTTCGGGACTTAACCCGGAATTT
* *
19152779 -GTATCTCGCACAAATG
64 AATAACTCGCACAAATG
** * * *
19152795 CCTTC-GGATCTTAGTCCGGATATATTCACTTAGCACAAAGCCTTCGGGACTTAGCCCGGA
1 CCTTCGGGA-CTTAACCCGGATATAGTCAC-TCGCACAAAGCCTTCGGGACTTAACCCGGA
19152855 CAGCATTCAA
Statistics
Matches: 182, Mismatches: 26, Indels: 22
0.79 0.11 0.10
Matches are distributed among these distances:
77 1 0.01
78 12 0.07
79 50 0.27
80 106 0.58
81 13 0.07
ACGTcount: A:0.25, C:0.28, G:0.21, T:0.26
Consensus pattern (80 bp):
CCTTCGGGACTTAACCCGGATATAGTCACTCGCACAAAGCCTTCGGGACTTAACCCGGAATTTAA
TAACTCGCACAAATG
Found at i:19152863 original size:41 final size:41
Alignment explanation
Indices: 19152786--19152863 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
19152776 TTTGTATCTC
* * *
19152786 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
19152827 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
19152864 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:19155686 original size:16 final size:16
Alignment explanation
Indices: 19155665--19155735 Score: 106
Period size: 16 Copynumber: 4.4 Consensus size: 16
19155655 GTTTGGTTCA
*
19155665 CTGTAATGGAATAGGG
1 CTGTAATGGAATAGAG
*
19155681 CTGTAATTGAATAGAG
1 CTGTAATGGAATAGAG
19155697 CTGTAATGGAATAGAG
1 CTGTAATGGAATAGAG
* *
19155713 TTGTAATGGAATAGAA
1 CTGTAATGGAATAGAG
19155729 CTGTAAT
1 CTGTAAT
19155736 AAGTAATTCA
Statistics
Matches: 49, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 49 1.00
ACGTcount: A:0.37, C:0.06, G:0.28, T:0.30
Consensus pattern (16 bp):
CTGTAATGGAATAGAG
Found at i:19155774 original size:46 final size:44
Alignment explanation
Indices: 19155717--19155810 Score: 143
Period size: 44 Copynumber: 2.1 Consensus size: 44
19155707 ATAGAGTTGT
19155717 AATGGAATAGAACTGTAATAAGTAATTCAACTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAAT-AGT-ATTCAACTGTTTGGTTGAATGG
***
19155763 AATGGAATAGAACTGTAATAGTATTCTTGTGTTTGGTTGAATGG
1 AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
19155807 AATG
1 AATG
19155811 ATGCTGTAAT
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 23 0.51
45 3 0.07
46 19 0.42
ACGTcount: A:0.34, C:0.05, G:0.26, T:0.35
Consensus pattern (44 bp):
AATGGAATAGAACTGTAATAGTATTCAACTGTTTGGTTGAATGG
Found at i:19155805 original size:39 final size:39
Alignment explanation
Indices: 19155712--19155825 Score: 104
Period size: 39 Copynumber: 2.7 Consensus size: 39
19155702 ATGGAATAGA
19155712 GTTGTAATGGAATAGAACTGTAATAAGTAATTCAACTGTTTG
1 GTTG-AATGGAATAGAACTGTAAT-AGT-ATTCAACTGTTTG
***
19155754 GTTGAATGGAATGGAATAGAACTGTAATAGTATTCTTGTGTTTG
1 G-T---T-GAATGGAATAGAACTGTAATAGTATTCAACTGTTTG
*
19155798 GTTGAATGGAAT-GATGCTGTAATAGTAT
1 GTTGAATGGAATAGA-ACTGTAATAGTAT
19155826 AAGGAAAAAA
Statistics
Matches: 62, Mismatches: 4, Indels: 15
0.77 0.05 0.19
Matches are distributed among these distances:
38 2 0.03
39 21 0.34
40 1 0.02
42 1 0.02
43 2 0.03
44 11 0.18
45 3 0.05
46 20 0.32
47 1 0.02
ACGTcount: A:0.32, C:0.05, G:0.25, T:0.37
Consensus pattern (39 bp):
GTTGAATGGAATAGAACTGTAATAGTATTCAACTGTTTG
Found at i:19156004 original size:17 final size:17
Alignment explanation
Indices: 19155982--19156014 Score: 66
Period size: 17 Copynumber: 1.9 Consensus size: 17
19155972 AATTATTATT
19155982 AAATATAATTTAATAAA
1 AAATATAATTTAATAAA
19155999 AAATATAATTTAATAA
1 AAATATAATTTAATAA
19156015 CATTCATTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (17 bp):
AAATATAATTTAATAAA
Found at i:19156551 original size:18 final size:18
Alignment explanation
Indices: 19156519--19156553 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
19156509 ACGTGGTAGT
**
19156519 CCAACTAGATTTTAAGTG
1 CCAACTAGAGCTTAAGTG
19156537 CCAACTAGAGCTTAAGT
1 CCAACTAGAGCTTAAGT
19156554 ATATCTGTTA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (18 bp):
CCAACTAGAGCTTAAGTG
Found at i:19156612 original size:40 final size:40
Alignment explanation
Indices: 19156561--19156805 Score: 382
Period size: 40 Copynumber: 6.1 Consensus size: 40
19156551 AGTATATCTG
* * *
19156561 TTAATACATACTTTATCCGGGTAAATTATACAATTTTCTG
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
19156601 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
* * * *
19156641 TTAATACATACTTTATCCGGATAAATTATATAGTTTTCTG
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
19156681 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
19156721 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
* * * * *
19156761 TTAATATATACTTCATCCGGATAAATTATACAATTTTCTA
1 TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
19156801 TTAAT
1 TTAAT
19156806 GTGCTTGTGA
Statistics
Matches: 189, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 189 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (40 bp):
TTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTA
Found at i:19156718 original size:120 final size:120
Alignment explanation
Indices: 19156557--19156805 Score: 426
Period size: 120 Copynumber: 2.1 Consensus size: 120
19156547 CTTAAGTATA
* *
19156557 TCTGTTAATACATACTTTATCCGGGTAAATTATACAATTTTCTGTTAATACATACTTTACCCGGG
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
* * *
19156622 TAAATTATACAGTTTTCTATTAATACATACTTTATCCGGATAAATTATATAGTTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAATTT
*
19156677 TCTGTTAATACATACTTTACCCGGGTAAATTATACAGTTTTCTATTAATACATACTTTACCCGGG
1 TCTGTTAATACATACTTTACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
*
19156742 TAAATTATACAGTTTTCTATTAATATATACTTCATCCGGATAAATTATACAATTT
66 TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAATTT
*
19156797 TCTATTAAT
1 TCTGTTAAT
19156806 GTGCTTGTGA
Statistics
Matches: 121, Mismatches: 8, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
120 121 1.00
ACGTcount: A:0.33, C:0.16, G:0.09, T:0.42
Consensus pattern (120 bp):
TCTGTTAATACATACTTTACCCGGGTAAATTATACAATTTTCTATTAATACATACTTTACCCGGG
TAAATTATACAGTTTTCTATTAATACATACTTCATCCGGATAAATTATACAATTT
Found at i:19162362 original size:17 final size:17
Alignment explanation
Indices: 19162340--19162373 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
19162330 TGACTAGTTT
19162340 GATCAGATTATAGCTGA
1 GATCAGATTATAGCTGA
19162357 GATCAGATTATAGCTGA
1 GATCAGATTATAGCTGA
19162374 TAATGGACAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.35, C:0.12, G:0.24, T:0.29
Consensus pattern (17 bp):
GATCAGATTATAGCTGA
Found at i:19162751 original size:31 final size:31
Alignment explanation
Indices: 19162716--19162779 Score: 119
Period size: 31 Copynumber: 2.1 Consensus size: 31
19162706 TTTTAATCTC
19162716 AAAGTTAAAAACAATGGGAGCTAAAGCAAAT
1 AAAGTTAAAAACAATGGGAGCTAAAGCAAAT
*
19162747 AAAGTTAAAAACAGTGGGAGCTAAAGCAAAT
1 AAAGTTAAAAACAATGGGAGCTAAAGCAAAT
19162778 AA
1 AA
19162780 TTCCTTTAAC
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.55, C:0.09, G:0.20, T:0.16
Consensus pattern (31 bp):
AAAGTTAAAAACAATGGGAGCTAAAGCAAAT
Found at i:19168219 original size:28 final size:28
Alignment explanation
Indices: 19168179--19168232 Score: 108
Period size: 28 Copynumber: 1.9 Consensus size: 28
19168169 AAGAACAAAT
19168179 AATTCTTTCTTTTTGACATTCCAGCTAG
1 AATTCTTTCTTTTTGACATTCCAGCTAG
19168207 AATTCTTTCTTTTTGACATTCCAGCT
1 AATTCTTTCTTTTTGACATTCCAGCT
19168233 CCTGTCTAGC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 26 1.00
ACGTcount: A:0.20, C:0.22, G:0.09, T:0.48
Consensus pattern (28 bp):
AATTCTTTCTTTTTGACATTCCAGCTAG
Found at i:19168353 original size:33 final size:33
Alignment explanation
Indices: 19168222--19168351 Score: 215
Period size: 33 Copynumber: 3.9 Consensus size: 33
19168212 TTTCTTTTTG
*
19168222 ACATTCCAGCTCCTGTCTAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
*
19168255 ACATTCTAGCTCCTGTCCAGCAACAAAACACCC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
*
19168288 ACATTCCAGCTCCTGTCCAGCAACAAAACACTC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
* *
19168321 ACATTCCAGCTCCTGTCCAACAACCAAACAC
1 ACATTCCAGCTCCTGTCCAGCAACAAAACAC
19168352 TCCCACTCAG
Statistics
Matches: 91, Mismatches: 6, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
33 91 1.00
ACGTcount: A:0.34, C:0.40, G:0.08, T:0.18
Consensus pattern (33 bp):
ACATTCCAGCTCCTGTCCAGCAACAAAACACCC
Found at i:19169640 original size:117 final size:117
Alignment explanation
Indices: 19169434--19169658 Score: 423
Period size: 117 Copynumber: 1.9 Consensus size: 117
19169424 ACTCTCGGGA
*
19169434 AGGAATATTCATATCTCAGCAAAAATACATAGTTGATTTGTTGACAGAGACGGGCAAGTTGGGCT
1 AGGAATATTCATATCTCAGCAAAAATACATAGTTGATTTGTTGACAGAGACAGGCAAGTTGGGCT
*
19169499 GTAAACCAGCAGAGACACCCATAGAGGTGAACCACAGACTTGGTTCTCAAGC
66 GTAAACCAGCAGAGACACCCATAGAGGTGAACCACAAACTTGGTTCTCAAGC
19169551 AGGAATATTCATATCTCAGCAAAAATACATAGTTGATTTGTTGACAGAGACAGGCAAGTTGGGCT
1 AGGAATATTCATATCTCAGCAAAAATACATAGTTGATTTGTTGACAGAGACAGGCAAGTTGGGCT
*
19169616 GTAAACCAGTAGAGACACCCATAGAGGTGAACCACAAACTTGG
66 GTAAACCAGCAGAGACACCCATAGAGGTGAACCACAAACTTGG
19169659 AAATGCACTA
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
117 105 1.00
ACGTcount: A:0.36, C:0.19, G:0.24, T:0.22
Consensus pattern (117 bp):
AGGAATATTCATATCTCAGCAAAAATACATAGTTGATTTGTTGACAGAGACAGGCAAGTTGGGCT
GTAAACCAGCAGAGACACCCATAGAGGTGAACCACAAACTTGGTTCTCAAGC
Found at i:19171477 original size:51 final size:52
Alignment explanation
Indices: 19171400--19171498 Score: 191
Period size: 51 Copynumber: 1.9 Consensus size: 52
19171390 ATATTAATAT
19171400 ATAAAAAATAAAAAAACTTACAAGCACCATGTTTTTCTTTATTTTGAGAGAG
1 ATAAAAAATAAAAAAACTTACAAGCACCATGTTTTTCTTTATTTTGAGAGAG
19171452 ATAAAAAAT-AAAAAACTTACAAGCACCATGTTTTTCTTTATTTTGAG
1 ATAAAAAATAAAAAAACTTACAAGCACCATGTTTTTCTTTATTTTGAG
19171499 GGAGCAAGAT
Statistics
Matches: 47, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
51 38 0.81
52 9 0.19
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.34
Consensus pattern (52 bp):
ATAAAAAATAAAAAAACTTACAAGCACCATGTTTTTCTTTATTTTGAGAGAG
Found at i:19177658 original size:23 final size:22
Alignment explanation
Indices: 19177607--19177659 Score: 54
Period size: 23 Copynumber: 2.3 Consensus size: 22
19177597 TAAGCTTTAT
19177607 TTGATAAATGTTTTGATATAAAA
1 TTGAT-AATGTTTTGATATAAAA
**
19177630 AAGATAATGTTTTTGA-ATAAAA
1 TTGATAATG-TTTTGATATAAAA
19177652 CTTGATAA
1 -TTGATAA
19177660 ATTTCAAGTG
Statistics
Matches: 24, Mismatches: 4, Indels: 4
0.75 0.12 0.12
Matches are distributed among these distances:
22 10 0.42
23 14 0.58
ACGTcount: A:0.45, C:0.02, G:0.13, T:0.40
Consensus pattern (22 bp):
TTGATAATGTTTTGATATAAAA
Found at i:19178052 original size:20 final size:20
Alignment explanation
Indices: 19178023--19178074 Score: 63
Period size: 19 Copynumber: 2.6 Consensus size: 20
19178013 AAAAAACTGT
19178023 TCAAGTATCGATACCCTCAT-
1 TCAAGTATCGATA-CCTCATA
* *
19178043 TTAGGTATCGA-ACCTCATA
1 TCAAGTATCGATACCTCATA
19178062 TCAAGTATCGATA
1 TCAAGTATCGATA
19178075 TTTCCTATAT
Statistics
Matches: 26, Mismatches: 4, Indels: 4
0.76 0.12 0.12
Matches are distributed among these distances:
18 6 0.23
19 10 0.38
20 10 0.38
ACGTcount: A:0.33, C:0.23, G:0.13, T:0.31
Consensus pattern (20 bp):
TCAAGTATCGATACCTCATA
Found at i:19178071 original size:19 final size:20
Alignment explanation
Indices: 19178022--19178074 Score: 65
Period size: 20 Copynumber: 2.7 Consensus size: 20
19178012 AAAAAAACTG
19178022 TTCAAGTATCGATACCCTCA
1 TTCAAGTATCGATACCCTCA
* *
19178042 TTTAGGTATCGA-A-CCTCA
1 TTCAAGTATCGATACCCTCA
19178060 TATCAAGTATCGATA
1 T-TCAAGTATCGATA
19178075 TTTCCTATAT
Statistics
Matches: 27, Mismatches: 4, Indels: 4
0.77 0.11 0.11
Matches are distributed among these distances:
18 6 0.22
19 10 0.37
20 11 0.41
ACGTcount: A:0.32, C:0.23, G:0.13, T:0.32
Consensus pattern (20 bp):
TTCAAGTATCGATACCCTCA
Found at i:19185462 original size:15 final size:15
Alignment explanation
Indices: 19185420--19185464 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
19185410 AAGCAATACT
*
19185420 AAACAGAATAGAACA
1 AAACAGAATAGAGCA
* **
19185435 GAACAGAGCAGAGCA
1 AAACAGAATAGAGCA
19185450 AAACAGAATAGAGCA
1 AAACAGAATAGAGCA
19185465 TGTATGTTTA
Statistics
Matches: 23, Mismatches: 7, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
15 23 1.00
ACGTcount: A:0.58, C:0.16, G:0.22, T:0.04
Consensus pattern (15 bp):
AAACAGAATAGAGCA
Found at i:19190115 original size:42 final size:42
Alignment explanation
Indices: 19190043--19190153 Score: 132
Period size: 42 Copynumber: 2.6 Consensus size: 42
19190033 ATAGCCTGGA
* * * * * *
19190043 CACACGCCCATGTCTTTACCCGTATGGCTCACATGGGCTAGG
1 CACACGCCCATGTCCTTGCCCATGTAGCTCACACGGGCTAGG
*
19190085 CACACGCCCATGTCCTTGCCCATGTAGCTCACACGGTCTAGG
1 CACACGCCCATGTCCTTGCCCATGTAGCTCACACGGGCTAGG
* * *
19190127 CACATGCCCATATCCTTGGCCATGTAG
1 CACACGCCCATGTCCTTGCCCATGTAG
19190154 TGTCGATAGT
Statistics
Matches: 59, Mismatches: 10, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
42 59 1.00
ACGTcount: A:0.20, C:0.35, G:0.22, T:0.23
Consensus pattern (42 bp):
CACACGCCCATGTCCTTGCCCATGTAGCTCACACGGGCTAGG
Found at i:19192601 original size:49 final size:49
Alignment explanation
Indices: 19192442--19192774 Score: 351
Period size: 49 Copynumber: 6.7 Consensus size: 49
19192432 CTAGTACGCA
* ** ** *
19192442 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTATACACGTGACC-AATTATCCGGTACACG
* * * * * *
19192492 TAGTAGCCAGCACTTAATACTATACACGTAATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTATACACGTGA-CCAA-TTATCCGGTACACG
* *
19192543 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTATACACGTGACCAATTATCCGGTACACG
* ** ** *
19192592 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACG
1 TAGTAGCCTGCACTTAGTACTATACACGTGACC-AATTATCCGGTACACG
* * * * * *
19192642 TAGTAGCCAGCACTTAATACTATACACGTAATCGAAGTTATCGGGTACACA
1 TAGTAGCCTGCACTTAGTACTATACACGTGA-CCAA-TTATCCGGTACACG
* *
19192693 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACACG
1 TAGTAGCCTGCACTTAGTACTATACACGTGACCAATTATCCGGTACACG
*
19192742 TAGTAGCCTGCACTTAGTACTACACACGTGACC
1 TAGTAGCCTGCACTTAGTACTATACACGTGACC
19192775 TCACAATAGA
Statistics
Matches: 229, Mismatches: 49, Indels: 11
0.79 0.17 0.04
Matches are distributed among these distances:
49 84 0.37
50 75 0.33
51 70 0.31
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (49 bp):
TAGTAGCCTGCACTTAGTACTATACACGTGACCAATTATCCGGTACACG
Found at i:19192709 original size:101 final size:98
Alignment explanation
Indices: 19192442--19192770 Score: 280
Period size: 100 Copynumber: 3.3 Consensus size: 98
19192432 CTAGTACGCA
* * ** ** * * *
19192442 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCAGCACTT
1 TAGTAGCCTGCACTTAGTACTATACACGTAACC-AATTATCCGGTACACATAGTAGCCTGCACTT
* * ** * ** * * *
19192507 AATACTATACACGTAATCGAAGTTATCGGGTACACA
65 AGTACTACACACGCGA-CCAA-CCATCCGATACACG
* ** *
19192543 TAGTAGCCTGCACTTAGTACTATACATGCGACCAATTATCCGGTACACGTAGTAGCCTGCACTTA
1 TAGTAGCCTGCACTTAGTACTATACACGTAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
* **
19192608 GTACTACACACGTGACCTAACCATTTGATACACG
66 GTACTACACACGCGACC-AACCATCCGATACACG
* * * *
19192642 TAGTAGCCAGCACTTAATACTATACACGTAATCGAAGTTATCGGGTACACATAGTAGCCTGCACT
1 TAGTAGCCTGCACTTAGTACTATACACGTAA-CCAA-TTATCCGGTACACATAGTAGCCTGCACT
* * ** *
19192707 TAGTACTATACATGCGACCAATTATCCGGTACACG
64 TAGTACTACACACGCGACCAACCATCCGATACACG
*
19192742 TAGTAGCCTGCACTTAGTACTACACACGT
1 TAGTAGCCTGCACTTAGTACTATACACGT
19192771 GACCTCACAA
Statistics
Matches: 187, Mismatches: 38, Indels: 7
0.81 0.16 0.03
Matches are distributed among these distances:
99 35 0.19
100 80 0.43
101 72 0.39
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (98 bp):
TAGTAGCCTGCACTTAGTACTATACACGTAACCAATTATCCGGTACACATAGTAGCCTGCACTTA
GTACTACACACGCGACCAACCATCCGATACACG
Found at i:19192713 original size:150 final size:150
Alignment explanation
Indices: 19192442--19192775 Score: 668
Period size: 150 Copynumber: 2.2 Consensus size: 150
19192432 CTAGTACGCA
19192442 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCAGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCAGCACTT
19192507 AATACTATACACGTAATCGAAGTTATCGGGTACACATAGTAGCCTGCACTTAGTACTATACATGC
66 AATACTATACACGTAATCGAAGTTATCGGGTACACATAGTAGCCTGCACTTAGTACTATACATGC
19192572 GACCAATTATCCGGTACACG
131 GACCAATTATCCGGTACACG
19192592 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCAGCACTT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCAGCACTT
19192657 AATACTATACACGTAATCGAAGTTATCGGGTACACATAGTAGCCTGCACTTAGTACTATACATGC
66 AATACTATACACGTAATCGAAGTTATCGGGTACACATAGTAGCCTGCACTTAGTACTATACATGC
19192722 GACCAATTATCCGGTACACG
131 GACCAATTATCCGGTACACG
19192742 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
1 TAGTAGCCTGCACTTAGTACTACACACGTGACCT
19192776 CACAATAGAT
Statistics
Matches: 184, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
150 184 1.00
ACGTcount: A:0.31, C:0.26, G:0.17, T:0.26
Consensus pattern (150 bp):
TAGTAGCCTGCACTTAGTACTACACACGTGACCTAACCATTTGATACACGTAGTAGCCAGCACTT
AATACTATACACGTAATCGAAGTTATCGGGTACACATAGTAGCCTGCACTTAGTACTATACATGC
GACCAATTATCCGGTACACG
Found at i:19198333 original size:21 final size:20
Alignment explanation
Indices: 19198309--19198354 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
19198299 AAAAAAATTT
19198309 AAAAAAAATCA-AAATTAAGA
1 AAAAAAAATCATAAATTAA-A
* *
19198329 AAAAAGATTCATAAATTAAA
1 AAAAAAAATCATAAATTAAA
19198349 AAAAAA
1 AAAAAA
19198355 TTGGTGCACA
Statistics
Matches: 22, Mismatches: 3, Indels: 2
0.81 0.11 0.07
Matches are distributed among these distances:
20 15 0.68
21 7 0.32
ACGTcount: A:0.74, C:0.04, G:0.04, T:0.17
Consensus pattern (20 bp):
AAAAAAAATCATAAATTAAA
Found at i:19198974 original size:19 final size:19
Alignment explanation
Indices: 19198935--19198971 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19198925 TAGTACGGCC
19198935 ATTTAATTTGTCTTGAGTT
1 ATTTAATTTGTCTTGAGTT
19198954 ATTTAATTTGTCTT-AGTT
1 ATTTAATTTGTCTTGAGTT
19198972 TATACAACTA
Statistics
Matches: 18, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 4 0.22
19 14 0.78
ACGTcount: A:0.22, C:0.05, G:0.14, T:0.59
Consensus pattern (19 bp):
ATTTAATTTGTCTTGAGTT
Found at i:19199008 original size:28 final size:27
Alignment explanation
Indices: 19198953--19199008 Score: 67
Period size: 27 Copynumber: 2.0 Consensus size: 27
19198943 TGTCTTGAGT
** *
19198953 TATTTAATTTGTCTTAGTTTATACAAC
1 TATTTAAAGTGTCTTAGTTTAGACAAC
*
19198980 TATTTAAAGTGTCTTAAGTTTAGATAAC
1 TATTTAAAGTGTCTT-AGTTTAGACAAC
19199008 T
1 T
19199009 TAATTGCGTC
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
27 13 0.54
28 11 0.46
ACGTcount: A:0.32, C:0.09, G:0.11, T:0.48
Consensus pattern (27 bp):
TATTTAAAGTGTCTTAGTTTAGACAAC
Found at i:19201963 original size:30 final size:31
Alignment explanation
Indices: 19201939--19201997 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 31
19201929 GTAAATACTC
* * *
19201939 AAAATTTGAGGGATTAA-AGTGTAAATATGA
1 AAAAGTTGAAGGACTAATAGTGTAAATATGA
19201969 AAAAGTTGAAGGACTAATAGTGTAAATAT
1 AAAAGTTGAAGGACTAATAGTGTAAATAT
19201998 TTTAAGGGTG
Statistics
Matches: 25, Mismatches: 3, Indels: 1
0.86 0.10 0.03
Matches are distributed among these distances:
30 14 0.56
31 11 0.44
ACGTcount: A:0.47, C:0.02, G:0.22, T:0.29
Consensus pattern (31 bp):
AAAAGTTGAAGGACTAATAGTGTAAATATGA
Found at i:19202272 original size:30 final size:30
Alignment explanation
Indices: 19202207--19202272 Score: 89
Period size: 30 Copynumber: 2.2 Consensus size: 30
19202197 TATTTTATAG
*
19202207 TTATTTAATTAGATAATTATTATTTATTTA
1 TTATTTAATAAGATAATTATTATTTATTTA
* *
19202237 ATATTTAATAAGATATTTATTA-TTATTTTA
1 TTATTTAATAAGATAATTATTATTTA-TTTA
19202267 TTATTT
1 TTATTT
19202273 TATTTAGTAT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
29 3 0.10
30 28 0.90
ACGTcount: A:0.36, C:0.00, G:0.03, T:0.61
Consensus pattern (30 bp):
TTATTTAATAAGATAATTATTATTTATTTA
Found at i:19204616 original size:17 final size:16
Alignment explanation
Indices: 19204582--19204622 Score: 55
Period size: 18 Copynumber: 2.4 Consensus size: 16
19204572 CAATTTATTG
*
19204582 AAAAAGGAAAAGAAAA
1 AAAAAGAAAAAGAAAA
19204598 AAAAAGAAAATAGAGAAA
1 AAAAAGAAAA-AGA-AAA
19204616 AAAAAGA
1 AAAAAGA
19204623 GGAAAAAGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
16 9 0.41
17 3 0.14
18 10 0.45
ACGTcount: A:0.80, C:0.00, G:0.17, T:0.02
Consensus pattern (16 bp):
AAAAAGAAAAAGAAAA
Found at i:19204638 original size:20 final size:21
Alignment explanation
Indices: 19204592--19204638 Score: 53
Period size: 20 Copynumber: 2.3 Consensus size: 21
19204582 AAAAAGGAAA
19204592 AGAAAAAAAAAGAAAATAGAG
1 AGAAAAAAAAAGAAAATAGAG
* *
19204613 A-AAAAAAAGAGGAAAA-AGTG
1 AGAAAAAAA-AAGAAAATAGAG
19204633 AGAAAA
1 AGAAAA
19204639 GTGAGGCAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
20 11 0.50
21 11 0.50
ACGTcount: A:0.74, C:0.00, G:0.21, T:0.04
Consensus pattern (21 bp):
AGAAAAAAAAAGAAAATAGAG
Found at i:19218256 original size:18 final size:18
Alignment explanation
Indices: 19218233--19218267 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
19218223 ATTAGGTGGT
19218233 TTTCCATTACCATCATTC
1 TTTCCATTACCATCATTC
*
19218251 TTTCCATTGCCATCATT
1 TTTCCATTACCATCATT
19218268 GTCATTTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.20, C:0.31, G:0.03, T:0.46
Consensus pattern (18 bp):
TTTCCATTACCATCATTC
Found at i:19219774 original size:25 final size:24
Alignment explanation
Indices: 19219714--19219776 Score: 67
Period size: 26 Copynumber: 2.6 Consensus size: 24
19219704 TAGTTTTAGT
*
19219714 AATATT-ATT-AAATTTTAATATA
1 AATATTAATTAAAATTTTAATACA
*
19219736 ATAAATTAATTTAAAATTTTACATACA
1 A-ATATTAA-TTAAAATTTTA-ATACA
19219763 AATATTAATTAAAA
1 AATATTAATTAAAA
19219777 AGATTTAAAG
Statistics
Matches: 33, Mismatches: 3, Indels: 7
0.77 0.07 0.16
Matches are distributed among these distances:
22 1 0.03
23 4 0.12
24 1 0.03
25 8 0.24
26 14 0.42
27 5 0.15
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.43
Consensus pattern (24 bp):
AATATTAATTAAAATTTTAATACA
Found at i:19228548 original size:39 final size:39
Alignment explanation
Indices: 19228468--19228679 Score: 304
Period size: 39 Copynumber: 5.5 Consensus size: 39
19228458 TTTAACCGAA
* * * *
19228468 CTAAGACCCGCAGGCATT-GTG-TGAGATTTATATCTGGG
1 CTAAGTCCCGAAGGCATTCGTGCTGATA-TTATATCCGGG
* * *
19228506 CTAAGTCCCGAAGGCATTCGTGCTGGTGTTATATCCGAG
1 CTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCGGG
19228545 CTAAGTCCCGAAGGCATTCGTGCT-AGTATTATATCCGGG
1 CTAAGTCCCGAAGGCATTCGTGCTGA-TATTATATCCGGG
19228584 CTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCGGG
1 CTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCGGG
*
19228623 CTAAGTCCCGAAGGCATTCGTGCTGATGTTATATCCGGG
1 CTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCGGG
*
19228662 CTAAGTTCCGAAGGCATT
1 CTAAGTCCCGAAGGCATT
19228680 TGGGTTGGAA
Statistics
Matches: 158, Mismatches: 12, Indels: 7
0.89 0.07 0.04
Matches are distributed among these distances:
38 16 0.10
39 139 0.88
40 3 0.02
ACGTcount: A:0.23, C:0.22, G:0.27, T:0.28
Consensus pattern (39 bp):
CTAAGTCCCGAAGGCATTCGTGCTGATATTATATCCGGG
Found at i:19230220 original size:34 final size:34
Alignment explanation
Indices: 19230145--19230224 Score: 99
Period size: 34 Copynumber: 2.4 Consensus size: 34
19230135 GCATGACTGC
* **
19230145 TACTGATACTGTGATGGGCTAAGGCCCTAATGCA
1 TACTGATACTGAGATGGGCTAAGGCCCTAAACCA
* *
19230179 TATTGATACTGAGATGGGCTAAGGCTC-AAACCA
1 TACTGATACTGAGATGGGCTAAGGCCCTAAACCA
19230212 TTACTGATACTGA
1 -TACTGATACTGA
19230225 AAGGGGTTTA
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
33 4 0.10
34 35 0.90
ACGTcount: A:0.30, C:0.19, G:0.24, T:0.28
Consensus pattern (34 bp):
TACTGATACTGAGATGGGCTAAGGCCCTAAACCA
Found at i:19235178 original size:40 final size:43
Alignment explanation
Indices: 19235134--19235232 Score: 116
Period size: 41 Copynumber: 2.3 Consensus size: 43
19235124 GTTATAAATA
19235134 GCACTAAGTGTGCGA-AATG-GAATAGCTTTGGCTATAT-GA-G
1 GCACTAAGTGTGCGATAATGAGAA-AGCTTTGGCTATATAGATG
* * * *
19235174 GCACTAAGTATGCGATACTGAGGAAGCTTTGGCTATTTGAGATG
1 GCACTAAGTGTGCGATAATGAGAAAGCTTTGGCTATAT-AGATG
19235218 GCACTAAGTGTGCGA
1 GCACTAAGTGTGCGA
19235233 GATCATTTTA
Statistics
Matches: 49, Mismatches: 5, Indels: 6
0.82 0.08 0.10
Matches are distributed among these distances:
40 14 0.29
41 16 0.33
42 2 0.04
43 2 0.04
44 15 0.31
ACGTcount: A:0.28, C:0.14, G:0.30, T:0.27
Consensus pattern (43 bp):
GCACTAAGTGTGCGATAATGAGAAAGCTTTGGCTATATAGATG
Found at i:19240636 original size:25 final size:25
Alignment explanation
Indices: 19240602--19240655 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
19240592 ATATATATAC
19240602 ATAAAAAAATATTAATATGAAATCA
1 ATAAAAAAATATTAATATGAAATCA
19240627 ATAAAAAAATATTAATATGAAATCA
1 ATAAAAAAATATTAATATGAAATCA
19240652 ATAA
1 ATAA
19240656 CGTGGACTAT
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.65, C:0.04, G:0.04, T:0.28
Consensus pattern (25 bp):
ATAAAAAAATATTAATATGAAATCA
Found at i:19243051 original size:180 final size:174
Alignment explanation
Indices: 19242669--19243197 Score: 658
Period size: 180 Copynumber: 3.0 Consensus size: 174
19242659 CAAATTACTC
*
19242669 CAATCTTCAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTTTCTTG
1 CAATCTT-AGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTG
* * * *
19242734 CTACCTCAGAGAGATAAGGCTAGTGGTAAAATCTGCTCCATTGCCGATACATGGAGATAAGATTC
65 CTACCTCAGAGAGATAAGG-TTG-GGTTAAATCTGCTCCATTGCAGATACATGGAGATAAGATTT
* * ** * *
19242799 ACCATTTTCG--ATCCACTCCGCTGCAACCTTAGGGAGATAAGATCTT
128 GCCATCTTCGATATCTGCTCTGCTGCAA-CTTAGGGAGATAAAATCTT
* * * * * *
19242845 CAATCTTTAGTTTGCTTTCTTGCTACCTTAGAAATATAAGACTCATTCTTCAACCTGCTCTCTTA
1 CAATC-TTAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTG
* * * * *
19242910 CTACCTAAGAGAGATAAGGTTTGGGGCTTCAATCTGTTCCATTGTATATACATGGAGATAAGATT
65 CTACCTCAGAGAGATAAGG-TT-GGG-TTAAATCTGCTCCATTGCAGATACATGGAGATAAGATT
19242975 TGCCATCTTCGATAATCTGCTCTGCTGCAACTTCAGGGAGATAAAATCTT
127 TGCCATCTTCGAT-ATCTGCTCTGCTGCAACTT-AGGGAGATAAAATCTT
* *
19243025 CAATTCTTAGTCTGCTTCCTTGCTACCTCAGGAAGATAAGACTCACTCTTCAACCTGCTCTCTTG
1 CAA-TCTTAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTG
*
19243090 CTACCTCAGAGAGATAAGGCT---TTAAATCTGCTCCATTGCAGATACATGGAGATAAGATTTGC
65 CTACCTCAGAGAGATAAGGTTGGGTTAAATCTGCTCCATTGCAGATACATGGAGATAAGATTTGC
* *
19243152 CATCTTCG--GTCTGCTTTGCTGCAACTTTAGGGAGATAAAATCTT
130 CATCTTCGATATCTGCTCTGCTGCAAC-TTAGGGAGATAAAATCTT
19243196 CA
1 CA
19243198 GTTTTCACCA
Statistics
Matches: 306, Mismatches: 38, Indels: 23
0.83 0.10 0.06
Matches are distributed among these distances:
171 33 0.11
172 2 0.01
174 45 0.15
176 76 0.25
177 43 0.14
179 4 0.01
180 101 0.33
181 2 0.01
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (174 bp):
CAATCTTAGTATGCTTCCTTGCTACCTCAGGAAGATAAGACTCATTCTTCAACCTGCTCTCTTGC
TACCTCAGAGAGATAAGGTTGGGTTAAATCTGCTCCATTGCAGATACATGGAGATAAGATTTGCC
ATCTTCGATATCTGCTCTGCTGCAACTTAGGGAGATAAAATCTT
Found at i:19247516 original size:27 final size:27
Alignment explanation
Indices: 19247450--19247502 Score: 106
Period size: 27 Copynumber: 2.0 Consensus size: 27
19247440 AGAATGTTAA
19247450 CTCAAAATGATAACAAAAATGTACTTG
1 CTCAAAATGATAACAAAAATGTACTTG
19247477 CTCAAAATGATAACAAAAATGTACTT
1 CTCAAAATGATAACAAAAATGTACTT
19247503 CATTGAAATA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.49, C:0.15, G:0.09, T:0.26
Consensus pattern (27 bp):
CTCAAAATGATAACAAAAATGTACTTG
Found at i:19251141 original size:19 final size:19
Alignment explanation
Indices: 19251117--19251156 Score: 55
Period size: 19 Copynumber: 2.1 Consensus size: 19
19251107 TACGATCTTT
*
19251117 AATGCATATG-ATGTAATGC
1 AATGCAAATGCATG-AATGC
19251136 AATGCAAATGCATGAATGC
1 AATGCAAATGCATGAATGC
19251155 AA
1 AA
19251157 AGGAGGCATC
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
19 16 0.84
20 3 0.16
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (19 bp):
AATGCAAATGCATGAATGC
Found at i:19265720 original size:85 final size:85
Alignment explanation
Indices: 19265591--19265769 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
19265581 TTTTTTATTG
19265591 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
19265656 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
19265676 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
19265741 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
19265761 CCCATGCTC
1 CCCATGCTC
19265770 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.27, G:0.08, T:0.38
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCACTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:19268479 original size:773 final size:775
Alignment explanation
Indices: 19266942--19268486 Score: 2112
Period size: 774 Copynumber: 2.0 Consensus size: 775
19266932 GTTACAGTGG
* * *
19266942 ATGCATGGATCATTGAAACTTAATAACTGGTAATTGCATATAATTTGGTTTAAGTAAAATTGATA
1 ATGCATGGATCATTGAAACGTAATAACTGGTAATTGCATATAATTTGATTTAAGTAAAATTCATA
* * ** *
19267007 TTTTTCATCAATTTCCACTATATTACAAATTTTTGGTTTGTGTAAAACAAAACATTAACTCAATT
66 TTTTTCATCAATTTCCACCACATTACAAAGATTTGATTTGTGTAAAACAAAACATTAACTCAATT
** *
19267072 AGTTTTTCTTAAATTTCGCAAATAATAATAAAATGGCGACCATACTAATGGTTTTCTAAAATATC
131 AGTTTTTCTTAAATTTCAAAAATAATAATAAAATGGCAACCATACTAATGGTTTTCTAAAATATC
***
19267137 ACTATCGACAATAATGAATCCTGTGTACAGACAGCTTAATGGGCGATTTAATCGTATTTATTGGC
196 ACTATCGACAATAATGAATCCTAAATACAGACAGCTTAATGGGCGATTTAATCGTATTTATTGGC
* * *
19267202 AATTCATATGCATTATTGATATTGGTGGCTAGTCCACATTATCGGCAGCTTATCTTCTTTTTACT
261 AATTCATATGCATTATTAATATTGGTGGCTAGTCCACATTATCGGCAACTTATCTTCATTTTACT
19267267 GATAGTTTAACTACATTATTGATTGGGGATTTATCCACATCAAGCTTTCGCTCACACTACTTAGA
326 GATAGTTTAACTACATTATTGATTGGGGATTTAT-C-CATCAAGC-TTCG------CTA-TTAGA
* * ** * * * *
19267332 GTTTGATAGACGGGTTTTGGGGAACTCGTGGTGTGTAGAGGATGGTTGGGTAGGAGCCTTTTTGC
381 GTTTGATACACGGGTTCTAAGGAACTCGTGGTGTGCAGAGGATGATTGGGTAGGAACCTTTTTAC
*
19267397 ATTACATCATATGCATGACATGTTCAAACACTGATTGGTTTGCCATGTACTATTTTGAAATGCTA
446 ATTACATCATATGCATGACATGTTCAAACACTGATTGGTTTGCCATGTACTATTCTGAAATGCTA
* *
19267462 ATGATGATTATTACCCGTTTCGATTATCTGTATGATTGTTTATTGTATTTATTCACACTGAGCTT
511 ATGATGATTATTACCCATTTCGATTATCTGTATGATTGTTTATTGTATTTACTCACACTGAGCTT
* * * * *
19267527 TCATAAACCCATGCCATTAGTTTCAAAACTTCTTAAGTAATGCACGAGACTAAGACCAGACTCAG
576 TCATAAACCCATCCCATTAGTCTCAAAACTTCTTAAGTAATACACGAGACTAAGACCAAACCCAG
* * *
19267592 TAAAGGGAGCACCACCTCAGACATCATACTATTTTCAAATAAAGTACTTTAAATAAGTTTTCTAT
641 CAAAGGGAGCACCACCTCAGACATCAGACTATTTTCAAATAAAGTACTTTAAAGAAGTTTTCTAT
*
19267657 TAGTTTGGTTGTGTATTTTTTAAAGTCTTTGGTCAGTGGCTTGATTATTTTTTATTTGGGTATTT
706 TAGTTTGGTTGTGTAATTTTTAAAGTCTTTGGTCAGTGGCTTGATTATTTTTTATTTGGGTATTT
19267722 TGCGC
771 TGCGC
* *
19267727 ATGCATGGATCATTGAAACGTAATAATTGGTAATTGCATGTAATTTGATTTAAGTAAAACTAACA
1 ATGCATGGATCATTGAAACGTAATAACTGGTAATTGCATATAATTTGATTTAAGTAAAA-T----
* * * *
19267792 TCTTTTTTTTTATCAATTTCCACCACATTACAAAGATTTGATTTTTGTAAAACAAAACATTAACT
61 TCATATTTTTCATCAATTTCCACCACATTACAAAGATTTGATTTGTGTAAAACAAAACATTAACT
19267857 CAATTAGTTTTTTCTTAAATTTCAAAAATAATAATAAAATGGCAACCATACTAATGGTTTTCTAA
126 CAATTAG-TTTTTCTTAAATTTCAAAAATAATAATAAAATGGCAACCATACTAATGGTTTTCTAA
* ** *
19267922 AATATCACTATCGACAATAAATGAATCCTAAATATAGATGGCTTAATGGGTGATTTAATC-TCAT
190 AATATCACTATCGACAAT-AATGAATCCTAAATACAGACAGCTTAATGGGCGATTTAATCGT-AT
* * * *
19267986 TTATTGGCAATTCATCTGCATTATTAATATTGGTGGCTAGTCCATATTATGGGCAACTTGTCTTC
253 TTATTGGCAATTCATATGCATTATTAATATTGGTGGCTAGTCCACATTATCGGCAACTTATCTTC
* * * * *
19268051 ATTTTACT-AGTAGTTTAATTGCATTATTGATTTGTGATTTAT-CA-C-A-C-T-G-T-TTGGAG
318 ATTTTACTGA-TAGTTTAACTACATTATTGATTGGGGATTTATCCATCAAGCTTCGCTATTAGAG
* * *
19268107 TTTGGTACATGGGTTCTAAGGAACTTGTGGTGTGCA-ACGGATGATTGGGTAGGAACCTTTTTAC
382 TTTGATACACGGGTTCTAAGGAACTCGTGGTGTGCAGA-GGATGATTGGGTAGGAACCTTTTTAC
* * *
19268171 ATTGCATCATGTGCATGACATGTTCATACACTGATTGGTTTGCCATGTACTATTCTGAAATGCTA
446 ATTACATCATATGCATGACATGTTCAAACACTGATTGGTTTGCCATGTACTATTCTGAAATGCTA
* * *
19268236 ATTATGATTGTTACCCATTTTGATTAT-TAGTATGATTGTTTATTGT-TTTGACTCACACTGAGC
511 ATGATGATTATTACCCATTTCGATTATCT-GTATGATTGTTTATTGTATTT-ACTCACACTGAGC
* * * *
19268299 TTTCATAATCTCA-CCCTATTAGTCT-AAAACTTCTTAGGTAATACATGAGACTAAGACCAAACC
574 TTTCATAAACCCATCCC-ATTAGTCTCAAAACTTCTTAAGTAATACACGAGACTAAGACCAAACC
* * *
19268362 CGGCATAGGGAGCACCACCTCAGACATTAGACTATTTTCAAATAAAGTACTTTAAAGAAGTTTTC
638 CAGCAAAGGGAGCACCACCTCAGACATCAGACTATTTTCAAATAAAGTACTTTAAAGAAGTTTTC
* *
19268427 TATTAGTTTGGTTGTGTAATTTTTAAATTCTTTGGTCTGTGGCTTGATTATTTTTTATTT
703 TATTAGTTTGGTTGTGTAATTTTTAAAGTCTTTGGTCAGTGGCTTGATTATTTTTTATTT
19268487 AGGGCTTTTA
Statistics
Matches: 673, Mismatches: 74, Indels: 38
0.86 0.09 0.05
Matches are distributed among these distances:
773 156 0.23
774 187 0.28
776 1 0.00
783 1 0.00
784 1 0.00
785 55 0.08
786 2 0.00
787 1 0.00
788 1 0.00
789 2 0.00
790 62 0.09
791 74 0.11
792 130 0.19
ACGTcount: A:0.30, C:0.15, G:0.17, T:0.39
Consensus pattern (775 bp):
ATGCATGGATCATTGAAACGTAATAACTGGTAATTGCATATAATTTGATTTAAGTAAAATTCATA
TTTTTCATCAATTTCCACCACATTACAAAGATTTGATTTGTGTAAAACAAAACATTAACTCAATT
AGTTTTTCTTAAATTTCAAAAATAATAATAAAATGGCAACCATACTAATGGTTTTCTAAAATATC
ACTATCGACAATAATGAATCCTAAATACAGACAGCTTAATGGGCGATTTAATCGTATTTATTGGC
AATTCATATGCATTATTAATATTGGTGGCTAGTCCACATTATCGGCAACTTATCTTCATTTTACT
GATAGTTTAACTACATTATTGATTGGGGATTTATCCATCAAGCTTCGCTATTAGAGTTTGATACA
CGGGTTCTAAGGAACTCGTGGTGTGCAGAGGATGATTGGGTAGGAACCTTTTTACATTACATCAT
ATGCATGACATGTTCAAACACTGATTGGTTTGCCATGTACTATTCTGAAATGCTAATGATGATTA
TTACCCATTTCGATTATCTGTATGATTGTTTATTGTATTTACTCACACTGAGCTTTCATAAACCC
ATCCCATTAGTCTCAAAACTTCTTAAGTAATACACGAGACTAAGACCAAACCCAGCAAAGGGAGC
ACCACCTCAGACATCAGACTATTTTCAAATAAAGTACTTTAAAGAAGTTTTCTATTAGTTTGGTT
GTGTAATTTTTAAAGTCTTTGGTCAGTGGCTTGATTATTTTTTATTTGGGTATTTTGCGC
Found at i:19271673 original size:38 final size:38
Alignment explanation
Indices: 19271617--19271696 Score: 124
Period size: 38 Copynumber: 2.1 Consensus size: 38
19271607 GATGTGTATT
* * *
19271617 CGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTATATC
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
*
19271655 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATT
1 CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
19271693 CGGG
1 CGGG
19271697 CCTTCGTGCC
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.20, C:0.23, G:0.29, T:0.29
Consensus pattern (38 bp):
CGGGATAAATCCCGCAGGCCTAGTGCTGGTATTATATC
Found at i:19271743 original size:43 final size:43
Alignment explanation
Indices: 19271668--19271813 Score: 233
Period size: 43 Copynumber: 3.4 Consensus size: 43
19271658 GATAAATCCC
* * *
19271668 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
19271709 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
19271752 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
19271795 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
19271814 AATGATATGT
Statistics
Matches: 98, Mismatches: 5, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
41 15 0.15
42 2 0.02
43 81 0.83
ACGTcount: A:0.14, C:0.23, G:0.34, T:0.29
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:19272197 original size:45 final size:42
Alignment explanation
Indices: 19272130--19272237 Score: 128
Period size: 45 Copynumber: 2.5 Consensus size: 42
19272120 TTGACTTGAT
* *
19272130 TATTCGGGCCTTTGAGCTTAGCAAACTATAATGCCGGTGAGATAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGT--GA-AC
**
19272175 TATTCGGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAAC
1 TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
19272217 TGATATCGGGCC-TCGAGCCTA
1 T-AT-TCGGGCCTTCGAGCCTA
19272238 ACAGGCGAAA
Statistics
Matches: 57, Mismatches: 4, Indels: 6
0.85 0.06 0.09
Matches are distributed among these distances:
42 3 0.05
43 13 0.23
44 7 0.12
45 34 0.60
ACGTcount: A:0.23, C:0.24, G:0.27, T:0.26
Consensus pattern (42 bp):
TATTCGGGCCTTCGAGCCTAGCAAACTATAATGCCGGTGAAC
Found at i:19295658 original size:20 final size:20
Alignment explanation
Indices: 19295633--19295670 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
19295623 TATTTAGTGC
19295633 AAAAATTTTCT-AAGTTTTGT
1 AAAAA-TTTCTAAAGTTTTGT
19295653 AAAAATTTCTAAAGTTTT
1 AAAAATTTCTAAAGTTTT
19295671 CGGTTTAGTC
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
19 5 0.29
20 12 0.71
ACGTcount: A:0.39, C:0.05, G:0.08, T:0.47
Consensus pattern (20 bp):
AAAAATTTCTAAAGTTTTGT
Found at i:19297613 original size:18 final size:18
Alignment explanation
Indices: 19297590--19297625 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
19297580 TGATTACAAC
19297590 TCTATTCAATTACAGTGA
1 TCTATTCAATTACAGTGA
*
19297608 TCTATTCCATTACAGTGA
1 TCTATTCAATTACAGTGA
19297626 ACCAAACGTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (18 bp):
TCTATTCAATTACAGTGA
Found at i:19300548 original size:47 final size:47
Alignment explanation
Indices: 19300494--19303572 Score: 5878
Period size: 47 Copynumber: 65.4 Consensus size: 47
19300484 TTAGGATTTT
* * * *
19300494 ATGTGATGAATGTGAATGTGTATATATGAGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
19300541 ATGTGATGAATGTGAACA-TGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
19300588 ATGTGATGAATGTGAACA-TGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* * * *
19300635 ATGTGATGAATGTGAACA-TGCATATGTGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
19300682 ATGTGATGAATGTGAACA-TGCATATATGTGATAAGGCCGAATGGCCA
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
19300729 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
19300778 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19300825 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19300872 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19300919 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19300966 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301013 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301060 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301107 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301154 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301201 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301248 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301295 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301342 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301389 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301436 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301483 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301530 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301577 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301624 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301671 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301718 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301765 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301812 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301859 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301906 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19301953 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302000 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302047 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302094 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302141 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302188 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302235 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302282 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302329 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302376 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302423 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302470 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302517 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302564 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302611 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302658 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302705 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302752 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302799 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302846 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302893 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302940 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19302987 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303034 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303081 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303128 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303175 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303222 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303269 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303316 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303363 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303410 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
19303457 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
19303504 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAGGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
19303553 ATGTGATGAATGTGATAAGT
1 ATGTGATGAATGTGA-AAGT
19303573 CCCGAGGGGC
Statistics
Matches: 3016, Mismatches: 9, Indels: 13
0.99 0.00 0.00
Matches are distributed among these distances:
46 1 0.00
47 2923 0.97
48 2 0.00
49 88 0.03
50 2 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:19305292 original size:36 final size:35
Alignment explanation
Indices: 19305242--19305353 Score: 109
Period size: 35 Copynumber: 3.2 Consensus size: 35
19305232 GTTGGAAGCA
19305242 ATCTACTAGG-TCTATGGAGCGGAATCATGGGAAATG
1 ATCTACT-GGCTCTATGGAGCGGAATCAT-GGAAATG
* **
19305278 ATCTACTGGCTCTATGGAGTGGCGTCATGGAAATG
1 ATCTACTGGCTCTATGGAGCGGAATCATGGAAATG
* * * * **
19305313 ATCCATTGGCTCTAAGGAGCGGCATTGTGGAAATG
1 ATCTACTGGCTCTATGGAGCGGAATCATGGAAATG
*
19305348 GTCTAC
1 ATCTAC
19305354 GGGTTTTACG
Statistics
Matches: 62, Mismatches: 13, Indels: 3
0.79 0.17 0.04
Matches are distributed among these distances:
35 40 0.65
36 22 0.35
ACGTcount: A:0.26, C:0.17, G:0.30, T:0.27
Consensus pattern (35 bp):
ATCTACTGGCTCTATGGAGCGGAATCATGGAAATG
Found at i:19311288 original size:25 final size:28
Alignment explanation
Indices: 19311225--19311291 Score: 79
Period size: 28 Copynumber: 2.5 Consensus size: 28
19311215 GGAAAGTCCA
*
19311225 CCAAGGACTATCTTATGCGTGAAGTCCT
1 CCAAGGACTATCTTATGCGTGAAGTCAT
*
19311253 CCAA-GAGCTATCTTATGTG-GAA-T-AT
1 CCAAGGA-CTATCTTATGCGTGAAGTCAT
19311278 CCAAGGACTATCTT
1 CCAAGGACTATCTT
19311292 GAAGACGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
25 12 0.34
26 3 0.09
27 5 0.14
28 15 0.43
ACGTcount: A:0.28, C:0.22, G:0.19, T:0.30
Consensus pattern (28 bp):
CCAAGGACTATCTTATGCGTGAAGTCAT
Found at i:19314858 original size:45 final size:45
Alignment explanation
Indices: 19314802--19314889 Score: 131
Period size: 45 Copynumber: 2.0 Consensus size: 45
19314792 GAACTATGTG
* *
19314802 ATCTGAACTCATTGACTTGTGGTCCGAGTTCCTGATATATGTGCC
1 ATCTGAACTCATTGACTTATGGTCCGAGTTCATGATATATGTGCC
* * *
19314847 ATCTGAACTCATTGAGTTATGGTCTGAGTTCATGATGTATGTG
1 ATCTGAACTCATTGACTTATGGTCCGAGTTCATGATATATGTG
19314890 ACACATGTTT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
45 38 1.00
ACGTcount: A:0.22, C:0.17, G:0.24, T:0.38
Consensus pattern (45 bp):
ATCTGAACTCATTGACTTATGGTCCGAGTTCATGATATATGTGCC
Done.