Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 63 of 297
Found at i:22200852 original size:43 final size:43
Alignment explanation
Indices: 22200804--22200906 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
22200794 TTGGTTTTCA
22200804 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
*
22200847 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTG
1 GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
22200890 GCACTAAGTGTGCGGGC
1 GCACTAAGTGTGCGGGC
22200907 TTGAAATGCA
Statistics
Matches: 59, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
43 59 1.00
ACGTcount: A:0.22, C:0.17, G:0.35, T:0.26
Consensus pattern (43 bp):
GCACTAAGTGTGCGGGCAATAAGTGTTCACGGTTGTGAGATTC
Found at i:22200923 original size:29 final size:29
Alignment explanation
Indices: 22200888--22200961 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
22200878 GTTGTGAGAT
* *
22200888 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
22200917 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
22200946 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
22200962 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:22201366 original size:40 final size:39
Alignment explanation
Indices: 22201322--22201458 Score: 132
Period size: 40 Copynumber: 3.4 Consensus size: 39
22201312 CATATCCAAA
* *
22201322 CTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGG
1 CTAAG-TCCGAAGAGCATTCGTGCGAGTGA-TAAATCCGGG
* * **
22201362 CTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGG
1 CTAAGT-CCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
* * *
22201402 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTG
1 CTAAG-TCCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
*
22201442 CTAAATCCCGAAGAGCA
1 CTAAGT-CCGAAGAGCA
22201459 ATCATGCTGG
Statistics
Matches: 83, Mismatches: 10, Indels: 8
0.82 0.10 0.08
Matches are distributed among these distances:
39 2 0.02
40 68 0.82
41 13 0.16
ACGTcount: A:0.28, C:0.22, G:0.26, T:0.24
Consensus pattern (39 bp):
CTAAGTCCGAAGAGCATTCGTGCGAGTGATAAATCCGGG
Found at i:22201412 original size:80 final size:80
Alignment explanation
Indices: 22201322--22201471 Score: 203
Period size: 80 Copynumber: 1.9 Consensus size: 80
22201312 CATATCCAAA
* * * *
22201322 CTAAGATCCGAAG-GCATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCATGC
1 CTAAGATCCGAAGAGCATTCGTGCGAGTGA-TAAATCCGGGCTAAATCCCGAAGAGCAATCATGC
22201386 TAGTGATGTATCCGGG
65 TAGTGATGTATCCGGG
* * * *
22201402 CTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGTGCTAAATCCCGAAGAGCAATCATGCT
1 CTAAGATCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAATCCCGAAGAGCAATCATGCT
*
22201467 GGTGA
66 AGTGA
22201472 CGTGTATTCG
Statistics
Matches: 60, Mismatches: 9, Indels: 2
0.85 0.13 0.03
Matches are distributed among these distances:
80 47 0.78
81 13 0.22
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
CTAAGATCCGAAGAGCATTCGTGCGAGTGATAAATCCGGGCTAAATCCCGAAGAGCAATCATGCT
AGTGATGTATCCGGG
Found at i:22204797 original size:40 final size:40
Alignment explanation
Indices: 22204520--22204783 Score: 349
Period size: 40 Copynumber: 6.6 Consensus size: 40
22204510 CGAATGATGT
* * * *
22204520 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
22204560 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
22204600 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
22204638 TCCGAGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
22204679 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
22204719 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
22204759 CCGGGCTATGTCCCAAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
22204784 AACGAGTAGC
Statistics
Matches: 201, Mismatches: 16, Indels: 14
0.87 0.07 0.06
Matches are distributed among these distances:
39 33 0.16
40 158 0.79
41 10 0.05
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:22204814 original size:159 final size:159
Alignment explanation
Indices: 22204520--22204816 Score: 379
Period size: 159 Copynumber: 1.9 Consensus size: 159
22204510 CGAATGATGT
*
22204520 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTG
* * ** *
22204585 TGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAATCCGAGTTAAGT
66 TGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCCGAGTTAAAT
22204650 CCCGAAGGCATTTGTGCGAGTTACTATAA
131 CCCGAAGGCATTTGTGCGAGTTACTATAA
* * * *
22204679 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTAAG-TCCCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTAAGAT-CCGAAGGCATT
* * * *
22204742 TGTGCGAGTTACT-ATAACCGGGCTATGTCCCAAAGGCATTTGAACGAG-TAGCTATATCCG-GT
64 TGTGCGAGATACTAAT-ACCGGGCTAAG-CCCAAAGGCATTGGAACGAGTTA-CTAAATCCGAGT
*
22204804 TAAATTCCGAAGG
126 TAAATCCCGAAGG
22204817 TACGTGATTT
Statistics
Matches: 118, Mismatches: 15, Indels: 10
0.83 0.10 0.07
Matches are distributed among these distances:
158 3 0.03
159 84 0.71
160 31 0.26
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.25
Consensus pattern (159 bp):
CCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTAAGATCCGAAGGCATTTG
TGCGAGATACTAATACCGGGCTAAGCCCAAAGGCATTGGAACGAGTTACTAAATCCGAGTTAAAT
CCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:22206708 original size:32 final size:32
Alignment explanation
Indices: 22206667--22206736 Score: 140
Period size: 32 Copynumber: 2.2 Consensus size: 32
22206657 TTAGGCGTTG
22206667 GCAAATTATGATTTTATTAGATCATGTTTTAA
1 GCAAATTATGATTTTATTAGATCATGTTTTAA
22206699 GCAAATTATGATTTTATTAGATCATGTTTTAA
1 GCAAATTATGATTTTATTAGATCATGTTTTAA
22206731 GCAAAT
1 GCAAAT
22206737 CAAAATCATG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 38 1.00
ACGTcount: A:0.36, C:0.07, G:0.13, T:0.44
Consensus pattern (32 bp):
GCAAATTATGATTTTATTAGATCATGTTTTAA
Found at i:22206967 original size:40 final size:39
Alignment explanation
Indices: 22206923--22207014 Score: 121
Period size: 39 Copynumber: 2.3 Consensus size: 39
22206913 CATATTCGGA
* **
22206923 CTAAGATCCGAAGCCATTTGTGCGAGTTACTAATTCCGGG
1 CTAAG-TCCGAAGCCATTGGTGCGAGTTACTAAAACCGGG
* *
22206963 CTAAGCCCGAAGGCATTGGTGCGAGTTACTAAAACCGGG
1 CTAAGTCCGAAGCCATTGGTGCGAGTTACTAAAACCGGG
22207002 CTAAGTCCCGAAG
1 CTAAGT-CCGAAG
22207015 AGCATTCATG
Statistics
Matches: 45, Mismatches: 6, Indels: 2
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.76
40 11 0.24
ACGTcount: A:0.27, C:0.24, G:0.27, T:0.22
Consensus pattern (39 bp):
CTAAGTCCGAAGCCATTGGTGCGAGTTACTAAAACCGGG
Found at i:22206985 original size:39 final size:40
Alignment explanation
Indices: 22206877--22207065 Score: 154
Period size: 40 Copynumber: 4.7 Consensus size: 40
22206867 TTGAATGATG
* * *
22206877 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTA-AT
* *
22206918 T-CGGACTAAGAT-CCGAAGCCATTTGTGCGAGTTACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAT
* *
22206957 TCCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
* ** * * **
22206996 ACCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA-TGTT
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGCGAGTTACTAAT
* *
22207036 TCCGGGCTAAGTTCCGAAGAGCATTCGTGC
1 TCCGGGCTAAGTCCCGAAG-GCATTTGTGC
22207066 TAGTGAGGTA
Statistics
Matches: 122, Mismatches: 20, Indels: 13
0.79 0.13 0.08
Matches are distributed among these distances:
39 37 0.30
40 64 0.52
41 21 0.17
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAT
Found at i:22207041 original size:40 final size:40
Alignment explanation
Indices: 22206997--22207151 Score: 184
Period size: 40 Copynumber: 3.9 Consensus size: 40
22206987 GTTACTAAAA
*
22206997 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTTT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
22207037 CCGGGCTAAGTTCCGAAGAGCATTCGTGCTAGTGAGGTAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
** * * * * *
22207077 CCGAACTAAGTTCCAAAGAGCATTCGTGCTAGTGTTATAT
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
* * *
22207117 CCGGGCTAGGTCCCGAAGAGCAATCATGCTGGTGA
1 CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGA
22207152 CGTGTATTCG
Statistics
Matches: 96, Mismatches: 19, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 96 1.00
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTAT
Found at i:22210592 original size:47 final size:47
Alignment explanation
Indices: 22210485--22211009 Score: 879
Period size: 47 Copynumber: 11.1 Consensus size: 47
22210475 GAAATGATAG
22210485 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
22210534 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22210581 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22210628 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22210675 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTG--TATATATGTGA
* * *
22210724 TAAGGCCTAATGGTCGATTTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
22210771 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
22210818 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
22210865 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22210912 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*** * * * * * *
22210959 CGGGGCCTAGTGGCCAACGTGATGGATGTGAAAGTGCATAAATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22211006 TAAG
1 TAAG
22211010 TCCCGAAGGG
Statistics
Matches: 454, Mismatches: 20, Indels: 6
0.95 0.04 0.01
Matches are distributed among these distances:
47 373 0.82
49 81 0.18
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:22210808 original size:190 final size:190
Alignment explanation
Indices: 22210485--22211009 Score: 901
Period size: 190 Copynumber: 2.8 Consensus size: 190
22210475 GAAATGATAG
22210485 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
22210550 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
22210615 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
131 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
22210675 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGTCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
* *
22210740 ATTTGATGAATGTGAAAGTGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
22210805 TGTATATGTGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATGTGTGA
131 TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
*
22210865 TAAGGCCTAATCGCCGATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
*** * * * *
22210928 ATGTGATGAATGTGAAAGTGTATATATGTGACGGGGCCTAGTGGCCAACGTGATGGATGTGAAAG
66 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
* *
22210993 TGCATAAATGTGATAAG
131 TGTATATATGTGATAAG
22211010 TCCCGAAGGG
Statistics
Matches: 316, Mismatches: 19, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
188 96 0.30
190 220 0.70
ACGTcount: A:0.31, C:0.09, G:0.30, T:0.30
Consensus pattern (190 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAG
TGTATATATGTGATAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:22211184 original size:37 final size:37
Alignment explanation
Indices: 22211128--22211206 Score: 115
Period size: 37 Copynumber: 2.1 Consensus size: 37
22211118 CCGAGCTCTA
* *
22211128 AAGACCCGATGACTACGTGTGG-GAATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAG-ATTATGTCCGGGT
*
22211165 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22211202 AAGAC
1 AAGAC
22211207 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.25, C:0.19, G:0.30, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22213964 original size:27 final size:27
Alignment explanation
Indices: 22213930--22214083 Score: 236
Period size: 27 Copynumber: 5.7 Consensus size: 27
22213920 TGGATAAGTT
*
22213930 GTAGAATTATCGAAATACCCCTGTAAG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
22213957 GTAGAATTACCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
22213984 GTAGAATTATTGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
22214011 GTAGAATTATCGAAATACCCCTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
* * * *
22214038 ATAGAATTACCAAAATACCCTTGTAGG
1 GTAGAATTATCGAAATACCCCTGTAGG
*
22214065 GTAGAAATATCGAAATACC
1 GTAGAATTATCGAAATACC
22214084 TTTGAAAAAG
Statistics
Matches: 114, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 114 1.00
ACGTcount: A:0.37, C:0.18, G:0.19, T:0.25
Consensus pattern (27 bp):
GTAGAATTATCGAAATACCCCTGTAGG
Found at i:22216969 original size:27 final size:27
Alignment explanation
Indices: 22216936--22217134 Score: 211
Period size: 27 Copynumber: 7.4 Consensus size: 27
22216926 GGATAAGTTT
*
22216936 TAGAATTATCGAAATACCCCTGTAAGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* *
22216963 TAGAATTACCGAAATACCCTTGTAATG
1 TAGAATTACCGAAATACCCCTGTAAGG
* ** * * *
22216990 TAGAATCATTGAAATACCCGTATAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
22217017 TAGAATTACCGAAATACCCCTGT-AGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * *
22217043 ATAGAATTACCAAAATACCCTTGTAGGG
1 -TAGAATTACCGAAATACCCCTGTAAGG
* *
22217071 TAGAAATACCGAAATACCCCTGTAGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
* * **
22217098 TAGAATTACCGAGATACCCTTGTGGGG
1 TAGAATTACCGAAATACCCCTGTAAGG
*
22217125 TAAAATTACC
1 TAGAATTACC
22217135 ATTTTGCCCC
Statistics
Matches: 143, Mismatches: 27, Indels: 4
0.82 0.16 0.02
Matches are distributed among these distances:
26 2 0.01
27 139 0.97
28 2 0.01
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (27 bp):
TAGAATTACCGAAATACCCCTGTAAGG
Found at i:22217074 original size:81 final size:80
Alignment explanation
Indices: 22216936--22217135 Score: 249
Period size: 81 Copynumber: 2.5 Consensus size: 80
22216926 GGATAAGTTT
* * * **
22216936 TAGAATTATCGAAATACCCCTGTAAGGTAGAATTACCGAAATACCCTTGTAATGTAG-AATCATT
1 TAGAATTACCGAAATACCCCTGT-AGGTAGAATTACCAAAATACCCTTGTAAGGTAGAAAT-ACC
*
22217000 GAAATACCCGTATAGGG
64 GAAATACCCCTATAGGG
*
22217017 TAGAATTACCGAAATACCCCTGTAGGATAGAATTACCAAAATACCCTTGTAGGGTAGAAATACCG
1 TAGAATTACCGAAATACCCCTGTAGG-TAGAATTACCAAAATACCCTTGTAAGGTAGAAATACCG
*
22217082 AAATACCCCTGTAGGG
65 AAATACCCCTATAGGG
* * * *
22217098 TAGAATTACCGAGATACCCTTGTGGGGTAAAATTACCA
1 TAGAATTACCGAAATACCCCTGT-AGGTAGAATTACCA
22217136 TTTTGCCCCT
Statistics
Matches: 104, Mismatches: 12, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
80 3 0.03
81 96 0.92
82 5 0.05
ACGTcount: A:0.36, C:0.19, G:0.20, T:0.25
Consensus pattern (80 bp):
TAGAATTACCGAAATACCCCTGTAGGTAGAATTACCAAAATACCCTTGTAAGGTAGAAATACCGA
AATACCCCTATAGGG
Found at i:22217831 original size:27 final size:26
Alignment explanation
Indices: 22217787--22217837 Score: 66
Period size: 27 Copynumber: 1.9 Consensus size: 26
22217777 CTCGTTGCAA
*
22217787 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
22217814 TCTGGTGACTTCGTCACAATATCT
1 TCTGGTGACCTCGCCACAATATCT
22217838 AGCAGCCTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
26 6 0.29
27 15 0.71
ACGTcount: A:0.18, C:0.27, G:0.20, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:22223283 original size:47 final size:47
Alignment explanation
Indices: 22223205--22223373 Score: 221
Period size: 47 Copynumber: 3.6 Consensus size: 47
22223195 CCCTTCGGGA
* * * * *
22223205 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * **
22223252 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
22223299 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* *
22223348 CTTATCACATATATATACATTCACAT
1 CTTATCACATATATACACTTTCACAT
22223374 CACAATTATC
Statistics
Matches: 105, Mismatches: 15, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
47 60 0.57
49 45 0.43
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:22223330 original size:49 final size:49
Alignment explanation
Indices: 22223205--22223373 Score: 224
Period size: 49 Copynumber: 3.6 Consensus size: 49
22223195 CCCTTCGGGA
* * * *
22223205 CTTATCACAT-T-TATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
* * **
22223252 CCTGTCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
22223299 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
1 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
22223348 CTTATCACATATATATACA--TTCACAT
1 CTTATCACATATATATACACTTTCACAT
22223374 CACAATTATC
Statistics
Matches: 106, Mismatches: 12, Indels: 8
0.84 0.10 0.06
Matches are distributed among these distances:
46 1 0.01
47 49 0.46
49 56 0.53
ACGTcount: A:0.29, C:0.31, G:0.08, T:0.33
Consensus pattern (49 bp):
CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTCGGC
Found at i:22231326 original size:50 final size:50
Alignment explanation
Indices: 22231251--22231350 Score: 182
Period size: 50 Copynumber: 2.0 Consensus size: 50
22231241 ATCTGTAAAA
22231251 ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
1 ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
* *
22231301 ATAATATAACAACCCGATTTTGGGCGTAACTGGAACAGTGGTTTCGTAAC
1 ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
22231351 CACTAACCCA
Statistics
Matches: 48, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
50 48 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (50 bp):
ATAATATAACAACCCAATTTTGGGCGTAACCGGAACAGTGGTTTCGTAAC
Found at i:22232566 original size:48 final size:48
Alignment explanation
Indices: 22232504--22232925 Score: 412
Period size: 48 Copynumber: 8.8 Consensus size: 48
22232494 GACATTTGGG
* * * *
22232504 TGATATGTGTGCCAGTGTAATACCATGTCTGGGACATGGCATCGGCCA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* **
22232552 TGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGTGA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* *
22232600 TGTTGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGG-CA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* *
22232647 TTGATATGTG-CCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
1 -TGATATGAGAGCC-AGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * *
22232696 CGATATGAGAGCCAGTGTAAGACCATGTTTGGAACATGGCATCGGCAA
1 TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * *
22232744 T-AT-TGCAAGAGTCAGTGTAAGAACAT-TTCTAGGACATGGCATCGG-CA
1 TGATATG--AGAGCCAGTGTAAGACCATGTT-TGGGACATGGCATCGGCCA
* * * * *
22232791 TTGATATGTGCA-CTAGTGTAAAACCATGTTTTGAACATGGCATCGGCCA
1 -TGATATGAG-AGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * ***
22232840 -CATCATGAGAGCCAGTGTAAGACCATGTCTAGGACATGGCATCAATC-
1 TGAT-ATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
* * * *
22232887 TCGATATGTGAGCCAATGTAAGAACATGTTTGGAACATG
1 T-GATATGAGAGCCAGTGTAAGACCATGTTTGGGACATG
22232926 ACAACGTCAA
Statistics
Matches: 307, Mismatches: 50, Indels: 34
0.79 0.13 0.09
Matches are distributed among these distances:
46 2 0.01
47 11 0.04
48 279 0.91
49 13 0.04
50 2 0.01
ACGTcount: A:0.28, C:0.18, G:0.28, T:0.26
Consensus pattern (48 bp):
TGATATGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCCA
Found at i:22232687 original size:144 final size:143
Alignment explanation
Indices: 22232504--22232882 Score: 530
Period size: 144 Copynumber: 2.6 Consensus size: 143
22232494 GACATTTGGG
* * *
22232504 TGATATGTGTGCC-AGTGTAATACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCCAGT
1 TGATATGTG-CCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCA-GATATGAGAGCCAGT
** * ** * *
22232568 GTAAGACCATGTTTGGAACATGGCATCGGTGATGTTGTGAGAGCCAGTGTAAGACCATGTT-TGG
64 GTAAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGCCAGTGTAAGAACAT-TTCTAG
22232632 GACATGGCATCGGCAT
128 GACATGGCATCGGCAT
*
22232648 TGATATGTGCCCTAGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCCAGTG
1 TGATATGTGCCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCA-GATATGAGAGCCAGTG
*
22232713 TAAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGTCAGTGTAAGAACATTTCTAGGA
65 TAAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGCCAGTGTAAGAACATTTCTAGGA
22232778 CATGGCATCGGCAT
130 CATGGCATCGGCAT
* * * *
22232792 TGATATGTGCACTAGTGTAAAACCATGTTTTGAACATGGCATCGGCCACATCATGAGAGCCAGTG
1 TGATATGTGCCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCAGAT-ATGAGAGCCAGTG
*
22232857 TAAGACCATGTCTAGG-ACATGGCATC
65 TAAGACCATGT-TTGGAACATGGCATC
22232883 AATCTCGATA
Statistics
Matches: 213, Mismatches: 18, Indels: 8
0.89 0.08 0.03
Matches are distributed among these distances:
143 6 0.03
144 204 0.96
145 3 0.01
ACGTcount: A:0.27, C:0.19, G:0.28, T:0.26
Consensus pattern (143 bp):
TGATATGTGCCCTAGTGTAAAACCATGTTTGGGACATGGCATCGGCCAGATATGAGAGCCAGTGT
AAGACCATGTTTGGAACATGGCATCGGCAATATTGCAAGAGCCAGTGTAAGAACATTTCTAGGAC
ATGGCATCGGCAT
Found at i:22232907 original size:144 final size:141
Alignment explanation
Indices: 22232517--22232925 Score: 488
Period size: 144 Copynumber: 2.8 Consensus size: 141
22232507 TATGTGTGCC
* * *
22232517 AGTGTAATACCATGTCTGGGACATGGCATCGGCCATGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAAACCATGTTTGGGACATGGCATCGGCCA-CATATGAGAGCCAGTGTAAGACCATGTTT
** * * * *
22232582 GGAACATGGCATCGGTGATGTTGTGAGAGCCAGTGTAAGACCATGTTTGGGACATGGCATCGGCA
65 GGAACATGGCATCAAT-ATGATATG-GAGCCAGTGTAAGAACATGTTTAGGACATGGCATCGGCA
*
22232647 TTGATATGTGCCCT
128 TTGATATGTGCACT
*
22232661 AGTGTAAGACCATGTTTGGGACATGGCATCGGCCACGATATGAGAGCCAGTGTAAGACCATGTTT
1 AGTGTAAAACCATGTTTGGGACATGGCATCGGCCAC-ATATGAGAGCCAGTGTAAGACCATGTTT
*
22232726 GGAACATGGCATCGGCAATATTGCA-A--GAGTCAGTGTAAGAACAT-TTCTAGGACATGGCATC
65 GGAACATGGCAT---CAATA-TG-ATATGGAGCCAGTGTAAGAACATGTT-TAGGACATGGCATC
22232787 GGCATTGATATGTGCACT
124 GGCATTGATATGTGCACT
* *
22232805 AGTGTAAAACCATGTTTTGAACATGGCATCGGCCACATCATGAGAGCCAGTGTAAGACCATGTCT
1 AGTGTAAAACCATGTTTGGGACATGGCATCGGCCACAT-ATGAGAGCCAGTGTAAGACCATGT-T
* * *
22232870 AGG-ACATGGCATCAATCTCGATATGTGAGCCAATGTAAGAACATGTTT-GGAACATG
64 TGGAACATGGCATCAATAT-GATATG-GAGCCAGTGTAAGAACATGTTTAGG-ACATG
22232926 ACAACGTCAA
Statistics
Matches: 231, Mismatches: 18, Indels: 32
0.82 0.06 0.11
Matches are distributed among these distances:
140 2 0.01
141 6 0.03
143 6 0.03
144 207 0.90
145 5 0.02
146 1 0.00
147 4 0.02
ACGTcount: A:0.29, C:0.18, G:0.28, T:0.25
Consensus pattern (141 bp):
AGTGTAAAACCATGTTTGGGACATGGCATCGGCCACATATGAGAGCCAGTGTAAGACCATGTTTG
GAACATGGCATCAATATGATATGGAGCCAGTGTAAGAACATGTTTAGGACATGGCATCGGCATTG
ATATGTGCACT
Found at i:22235321 original size:29 final size:30
Alignment explanation
Indices: 22235288--22235344 Score: 89
Period size: 30 Copynumber: 1.9 Consensus size: 30
22235278 AAATTGATTT
*
22235288 TCAAA-CCTAGGGGTAAAATGGTCATTTTG
1 TCAAAGCCTAGGGGCAAAATGGTCATTTTG
*
22235317 TCAAAGTCTAGGGGCAAAATGGTCATTT
1 TCAAAGCCTAGGGGCAAAATGGTCATTT
22235345 CACATTGTCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (30 bp):
TCAAAGCCTAGGGGCAAAATGGTCATTTTG
Found at i:22235777 original size:46 final size:46
Alignment explanation
Indices: 22235675--22235848 Score: 185
Period size: 46 Copynumber: 3.7 Consensus size: 46
22235665 ACATTATCAG
* *
22235675 AGCCAGTGTAAGAACATGTCTGGGACATGGCATCGGCATTGAGAC-TA
1 AGCCAGTGTAAG-ACATGTCTGGGACAT-GCATCGGCCTCGAGACGTA
* * *
22235722 GTGCTAGTGTAAGACATGTCTGGGACATGCTTCGGCCTCGAGACGTA
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
* * *
22235769 AGCCAGTGTAAGACATGTCCGGGACATGCATCGG-CTACAAGATGT-
1 AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGACGTA
*
22235814 -GTCAGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGG
22235849 TACAAATATG
Statistics
Matches: 109, Mismatches: 13, Indels: 10
0.83 0.10 0.08
Matches are distributed among these distances:
44 11 0.10
45 15 0.14
46 56 0.51
47 17 0.16
48 10 0.09
ACGTcount: A:0.26, C:0.21, G:0.31, T:0.22
Consensus pattern (46 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGACGTA
Found at i:22238345 original size:46 final size:46
Alignment explanation
Indices: 22238278--22238449 Score: 192
Period size: 46 Copynumber: 3.7 Consensus size: 46
22238268 AACCCGCCCC
*
22238278 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
22238324 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG--G-C--GTTCGCATCCA
* * * *
22238372 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
*
22238417 TAGGTGAA-TACGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACT-CGGACTCAACTCAACGAGTTCGG
22238450 ATGCTCAACC
Statistics
Matches: 106, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
42 2 0.02
43 3 0.03
44 2 0.02
45 2 0.02
46 58 0.55
47 28 0.26
48 3 0.03
49 2 0.02
50 3 0.03
51 3 0.03
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGGCGTTCGCATCCA
Found at i:22238395 original size:93 final size:93
Alignment explanation
Indices: 22238283--22238453 Score: 290
Period size: 93 Copynumber: 1.8 Consensus size: 93
22238273 GCCCCTAAGT
* *
22238283 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACT-CGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAA-TACGGACTCAACTCA
22238347 ACGAGTTCGGATGCCTAGTTACATCTCAC
65 ACGAGTTCGGATGCCTAGTTACATCTCAC
* *
22238376 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAGGTGAATACGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAATACGGACTCAACTCAA
22238441 CGAGTTCGGATGC
66 CGAGTTCGGATGC
22238454 TCAACCATCC
Statistics
Matches: 73, Mismatches: 4, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
92 1 0.01
93 72 0.99
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAATACGGACTCAACTCAA
CGAGTTCGGATGCCTAGTTACATCTCAC
Found at i:22238907 original size:30 final size:30
Alignment explanation
Indices: 22238873--22238932 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22238863 ATTTAATACG
22238873 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
22238903 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
22238933 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:22242080 original size:30 final size:30
Alignment explanation
Indices: 22242022--22242080 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
22242012 ATTTTCGAAC
* ***
22242022 CTAGGGGTAAAATGGTCATTTTGTCAAAGT
1 CTAGGGGCAAAATGGTCATTTCACCAAAGT
22242052 CTAGGGGCAAAATGGTCATTTCACCAAAG
1 CTAGGGGCAAAATGGTCATTTCACCAAAG
22242081 AAGTGAAATT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.15, G:0.25, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTCATTTCACCAAAGT
Found at i:22242531 original size:46 final size:44
Alignment explanation
Indices: 22242422--22242587 Score: 156
Period size: 46 Copynumber: 3.6 Consensus size: 44
22242412 CATTATGAGA
* * * *
22242422 GCCAGTGTAAGACCATGTTTGGGACATCGCATCGACATTGAGACGA-GT
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC--T-ACAAGATGT
* * *
22242470 GCTAGTGTAAGACATGTCTGGGACATGCTTTGGCCT-CAAGATGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CTACAAGATGT
*
22242514 AAGCCAGTGTAAGACATGTCTGAGACATGCATCGGCTACAAGATGT
1 --GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGT
*
22242560 GTCAGTGTAAGACCATGTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
22242588 GCATACCCCA
Statistics
Matches: 99, Mismatches: 13, Indels: 15
0.78 0.10 0.12
Matches are distributed among these distances:
43 3 0.03
44 13 0.13
45 17 0.17
46 41 0.41
47 14 0.14
48 11 0.11
ACGTcount: A:0.27, C:0.19, G:0.29, T:0.25
Consensus pattern (44 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCTACAAGATGT
Found at i:22244417 original size:34 final size:35
Alignment explanation
Indices: 22244368--22244446 Score: 99
Period size: 34 Copynumber: 2.3 Consensus size: 35
22244358 GAATAGCACA
*
22244368 TTCAAAATAACTTCACATAAAACCGAATATAT-AAG
1 TTCAATATAACTTCACATAAAACCGAATA-ATCAAG
** *
22244403 TTCAATATAA-TTCACATGTAATCGAATAATCAAG
1 TTCAATATAACTTCACATAAAACCGAATAATCAAG
22244437 TTCAATATAA
1 TTCAATATAA
22244447 GCTTACCTAT
Statistics
Matches: 39, Mismatches: 4, Indels: 3
0.85 0.09 0.07
Matches are distributed among these distances:
33 2 0.05
34 28 0.72
35 9 0.23
ACGTcount: A:0.48, C:0.15, G:0.06, T:0.30
Consensus pattern (35 bp):
TTCAATATAACTTCACATAAAACCGAATAATCAAG
Found at i:22245259 original size:30 final size:29
Alignment explanation
Indices: 22245225--22245289 Score: 71
Period size: 29 Copynumber: 2.2 Consensus size: 29
22245215 ATCCTCATAC
*
22245225 TAGTCCAT-ATATTTCATTTATTTTT-CATTT
1 TAGTCCATCA-ATTT-A-TTATTTTTACAATT
*
22245255 TAGTCCTTCAATTTATTATTTTTACAATT
1 TAGTCCATCAATTTATTATTTTTACAATT
22245284 TAGTCC
1 TAGTCC
22245290 TATTAACTCA
Statistics
Matches: 31, Mismatches: 2, Indels: 5
0.82 0.05 0.13
Matches are distributed among these distances:
28 8 0.26
29 11 0.35
30 11 0.35
31 1 0.03
ACGTcount: A:0.25, C:0.15, G:0.05, T:0.55
Consensus pattern (29 bp):
TAGTCCATCAATTTATTATTTTTACAATT
Found at i:22246294 original size:27 final size:28
Alignment explanation
Indices: 22246244--22246296 Score: 81
Period size: 27 Copynumber: 1.9 Consensus size: 28
22246234 CTGACCGTGT
*
22246244 GTCCCTACAAGATAGAAATTTCAAGTCA
1 GTCCCTACAAGATAAAAATTTCAAGTCA
*
22246272 GTCCCTACACG-TAAAAATTTCAAGT
1 GTCCCTACAAGATAAAAATTTCAAGT
22246297 TAGTATGCAT
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
27 13 0.57
28 10 0.43
ACGTcount: A:0.38, C:0.23, G:0.13, T:0.26
Consensus pattern (28 bp):
GTCCCTACAAGATAAAAATTTCAAGTCA
Found at i:22250430 original size:19 final size:19
Alignment explanation
Indices: 22250406--22250461 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
22250396 GTATTCGATT
22250406 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
22250425 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
22250441 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
22250460 AC
1 AC
22250462 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:22250477 original size:33 final size:35
Alignment explanation
Indices: 22250404--22250470 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
22250394 GAGTATTCGA
*
22250404 TTACATGTGAATTTATATTGAACATGTGTATTTAG
1 TTACATGTGAATTTATATTGAACATGTATATTTAG
*
22250439 TTACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TTACATGTGAATTTATATTGAACATGTATATTTA
22250471 TATACATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 22 0.73
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACATGTGAATTTATATTGAACATGTATATTTAG
Found at i:22251282 original size:40 final size:40
Alignment explanation
Indices: 22251223--22251389 Score: 271
Period size: 40 Copynumber: 4.2 Consensus size: 40
22251213 GAACTAAGAT
* *
22251223 CCGAAGGCATTTGTACTAGTTACTATATCCAGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
* **
22251263 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTATGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
*
22251303 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
*
22251343 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
22251383 CCGAAGG
1 CCGAAGG
22251390 TACTTGGGTT
Statistics
Matches: 118, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
40 118 1.00
ACGTcount: A:0.23, C:0.23, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
Found at i:22258140 original size:19 final size:19
Alignment explanation
Indices: 22258116--22258171 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
22258106 GTATTCGATT
22258116 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
22258135 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
22258151 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
22258170 AC
1 AC
22258172 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:22258187 original size:33 final size:35
Alignment explanation
Indices: 22258114--22258180 Score: 102
Period size: 35 Copynumber: 2.0 Consensus size: 35
22258104 GAGTATTCGA
*
22258114 TTACATGTGAATTTATATTGAACATGTGTATTTAG
1 TTACATGTGAATTTATATTGAACATGTATATTTAG
*
22258149 TTACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TTACATGTGAATTTATATTGAACATGTATATTTA
22258181 TATACATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.23
34 1 0.03
35 22 0.73
ACGTcount: A:0.31, C:0.06, G:0.15, T:0.48
Consensus pattern (35 bp):
TTACATGTGAATTTATATTGAACATGTATATTTAG
Found at i:22258981 original size:40 final size:40
Alignment explanation
Indices: 22258933--22259179 Score: 476
Period size: 40 Copynumber: 6.2 Consensus size: 40
22258923 GAACTAAGAT
22258933 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
22258973 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
22259013 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
22259053 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
*
22259093 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
*
22259133 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
22259173 CCGAAGG
1 CCGAAGG
22259180 TACTTGGGTT
Statistics
Matches: 206, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
40 206 1.00
ACGTcount: A:0.21, C:0.23, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAGTC
Found at i:22265710 original size:19 final size:19
Alignment explanation
Indices: 22265686--22265741 Score: 64
Period size: 19 Copynumber: 3.1 Consensus size: 19
22265676 GTATTCGACT
22265686 ACATGTGAATTTATATTGA
1 ACATGTGAATTTATATTGA
* *
22265705 ACATGTGTATTTA-GTT--
1 ACATGTGAATTTATATTGA
*
22265721 ACATGTGAGTTTATATTGA
1 ACATGTGAATTTATATTGA
22265740 AC
1 AC
22265742 TTATATTTAT
Statistics
Matches: 29, Mismatches: 5, Indels: 6
0.73 0.12 0.15
Matches are distributed among these distances:
16 11 0.38
17 2 0.07
18 2 0.07
19 14 0.48
ACGTcount: A:0.32, C:0.07, G:0.18, T:0.43
Consensus pattern (19 bp):
ACATGTGAATTTATATTGA
Found at i:22265757 original size:33 final size:35
Alignment explanation
Indices: 22265685--22265750 Score: 100
Period size: 35 Copynumber: 1.9 Consensus size: 35
22265675 AGTATTCGAC
*
22265685 TACATGTGAATTTATATTGAACATGTGTATTTAGT
1 TACATGTGAATTTATATTGAACATGTATATTTAGT
*
22265720 TACATGTGAGTTTATATTGAAC-T-TATATTTA
1 TACATGTGAATTTATATTGAACATGTATATTTA
22265751 TATACATTCG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 7 0.24
34 1 0.03
35 21 0.72
ACGTcount: A:0.32, C:0.06, G:0.15, T:0.47
Consensus pattern (35 bp):
TACATGTGAATTTATATTGAACATGTATATTTAGT
Found at i:22266558 original size:40 final size:40
Alignment explanation
Indices: 22266503--22266708 Score: 358
Period size: 40 Copynumber: 5.2 Consensus size: 40
22266493 GAACTAAGAT
22266503 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
22266543 CCGAAGGCAATTGTGCTAGTTGCTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
22266583 CCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
* *
22266623 CCAAAGGCATTTGTGCTAGTTACTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
22266663 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
1 CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
22266703 CCGAAG
1 CCGAAG
22266709 CTACTTGGGT
Statistics
Matches: 158, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
40 158 1.00
ACGTcount: A:0.24, C:0.23, G:0.25, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTTGCTATATCCGGGCTAAATC
Found at i:22270287 original size:44 final size:43
Alignment explanation
Indices: 22270235--22270332 Score: 126
Period size: 44 Copynumber: 2.3 Consensus size: 43
22270225 TCTGATATAT
*
22270235 CATGTAAGACCGTGTCTGGGACACAGGCTTCAAT-TTGAGATTTA
1 CATGTAAGACCGTGTCTGGGACACAGGCATCAATATTGA-A-TTA
* * * *
22270279 CGTGTAAGACCTTGTCTGGGACAGAGGCATCGATATTGAATTA
1 CATGTAAGACCGTGTCTGGGACACAGGCATCAATATTGAATTA
22270322 CATGTAAGACC
1 CATGTAAGACC
22270333 ACGTCCAGGA
Statistics
Matches: 47, Mismatches: 6, Indels: 3
0.84 0.11 0.05
Matches are distributed among these distances:
43 13 0.28
44 30 0.64
45 4 0.09
ACGTcount: A:0.29, C:0.18, G:0.26, T:0.28
Consensus pattern (43 bp):
CATGTAAGACCGTGTCTGGGACACAGGCATCAATATTGAATTA
Found at i:22278249 original size:79 final size:81
Alignment explanation
Indices: 22278146--22278330 Score: 236
Period size: 79 Copynumber: 2.3 Consensus size: 81
22278136 GCTAGTCGTT
* *
22278146 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCC
* *
22278209 GGATTTAGTAAC-TCGCA
64 GGATATAGTAACTTAGCA
* **
22278226 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
* *
22278290 ATATGGTCACTTAGCA
66 ATATAGTAACTTAGCA
22278306 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22278331 CATCATTCAA
Statistics
Matches: 92, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 56 0.61
80 34 0.37
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTAACTTAGCA
Found at i:22278330 original size:40 final size:40
Alignment explanation
Indices: 22278146--22278330 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
22278136 GCTAGTCGTT
* *
22278146 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
22278186 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
22278226 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
22278265 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
22278306 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22278331 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:22278503 original size:50 final size:52
Alignment explanation
Indices: 22278428--22278529 Score: 190
Period size: 52 Copynumber: 2.0 Consensus size: 52
22278418 TTATCATTCT
22278428 TGCAATTTCGGCTCAATAG-C-CACACAAAGAGCATGATTTTGATTTGCTTA
1 TGCAATTTCGGCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTA
22278478 TGCAATTTCGGCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTA
1 TGCAATTTCGGCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTA
22278530 AAACATGATC
Statistics
Matches: 50, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
50 19 0.38
51 1 0.02
52 30 0.60
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (52 bp):
TGCAATTTCGGCTCAATAGCCACACACAAAGAGCATGATTTTGATTTGCTTA
Found at i:22279598 original size:74 final size:74
Alignment explanation
Indices: 22279513--22279652 Score: 235
Period size: 74 Copynumber: 1.9 Consensus size: 74
22279503 CCGACCACTA
* *
22279513 CTAATTAGGGGGGGAATTTGACATACAAGTCCTCCCTTTTTATTACATGCACTATTAGATCCTTA
1 CTAATTAGGGGGGGAATTTGACATACAAGTCCCCCCTTTTTATTACATGCACTAATAGATCCTTA
22279578 TAGATTAGC
66 TAGATTAGC
* * *
22279587 CTAATTAGGGGGGGAATTTGACATGCAAGTCCCCCCTTTTTATTTCATGCACTAATAGGTCCTTA
1 CTAATTAGGGGGGGAATTTGACATACAAGTCCCCCCTTTTTATTACATGCACTAATAGATCCTTA
22279652 T
66 T
22279653 GCTTCGACCT
Statistics
Matches: 61, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
74 61 1.00
ACGTcount: A:0.26, C:0.20, G:0.19, T:0.35
Consensus pattern (74 bp):
CTAATTAGGGGGGGAATTTGACATACAAGTCCCCCCTTTTTATTACATGCACTAATAGATCCTTA
TAGATTAGC
Found at i:22279933 original size:17 final size:17
Alignment explanation
Indices: 22279911--22279943 Score: 57
Period size: 17 Copynumber: 1.9 Consensus size: 17
22279901 AACTAACATT
*
22279911 AAAATGTAATGACAATA
1 AAAATGCAATGACAATA
22279928 AAAATGCAATGACAAT
1 AAAATGCAATGACAAT
22279944 GTGCACTAAC
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.58, C:0.09, G:0.12, T:0.21
Consensus pattern (17 bp):
AAAATGCAATGACAATA
Found at i:22280292 original size:100 final size:100
Alignment explanation
Indices: 22280102--22280302 Score: 278
Period size: 100 Copynumber: 2.0 Consensus size: 100
22280092 TTTGTCTTTA
* * ***
22280102 GAGTGCTTTCTTTTCTTTTTTTTAGGCTTCACACGGTCCTCGAATTGCTCCTCAGTTTTTGGTGT
1 GAGTGCTTTCTTTTCTTTTTTTTAGGCTTCACACGGTCCTCGAATTGCTCCTCAATTTTAGCACT
* *
22280167 TGCCCCGACATCATCGGCTGCTTCTTGTGGAGGAG
66 TGCCCCGACATCATCAGCTACTTCTTGTGGAGGAG
22280202 GAGTGCTTTCTTTTCTTTTTTTTAGGCTTCACACGGTCCTCGAATTGCTCCTCAATTTCTAGCAC
1 GAGTGCTTTCTTTTCTTTTTTTTAGGCTTCACACGGTCCTCGAATTGCTCCTCAATTT-TAGCAC
* * * * *
22280267 TT-CCCCGGCATCGTTAGCTATTTCTTGTGTAGGAG
65 TTGCCCCGACATCATCAGCTACTTCTTGTGGAGGAG
22280302 G
1 G
22280303 GGTTACCTTG
Statistics
Matches: 88, Mismatches: 12, Indels: 2
0.86 0.12 0.02
Matches are distributed among these distances:
100 84 0.95
101 4 0.05
ACGTcount: A:0.13, C:0.24, G:0.22, T:0.40
Consensus pattern (100 bp):
GAGTGCTTTCTTTTCTTTTTTTTAGGCTTCACACGGTCCTCGAATTGCTCCTCAATTTTAGCACT
TGCCCCGACATCATCAGCTACTTCTTGTGGAGGAG
Found at i:22280495 original size:15 final size:15
Alignment explanation
Indices: 22280477--22280511 Score: 61
Period size: 15 Copynumber: 2.3 Consensus size: 15
22280467 TATCAGTGGA
22280477 TTCTTTCTCAATATT
1 TTCTTTCTCAATATT
*
22280492 TTCTGTCTCAATATT
1 TTCTTTCTCAATATT
22280507 TTCTT
1 TTCTT
22280512 CCTCGGCCTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.17, C:0.20, G:0.03, T:0.60
Consensus pattern (15 bp):
TTCTTTCTCAATATT
Found at i:22282401 original size:83 final size:83
Alignment explanation
Indices: 22282262--22282428 Score: 316
Period size: 83 Copynumber: 2.0 Consensus size: 83
22282252 CAGCTTATAA
*
22282262 TATTCTGTTGTGCATGAAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAATGTGCTGAGAAG
1 TATTCTATTGTGCATGAAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAATGTGCTGAGAAG
22282327 TGTTGGAGAAGTCCTGGG
66 TGTTGGAGAAGTCCTGGG
*
22282345 TATTCTATTGTGCGTGAAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAATGTGCTGAGAAG
1 TATTCTATTGTGCATGAAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAATGTGCTGAGAAG
22282410 TGTTGGAGAAGTCCTGGG
66 TGTTGGAGAAGTCCTGGG
22282428 T
1 T
22282429 TCAAACCTGG
Statistics
Matches: 82, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
83 82 1.00
ACGTcount: A:0.24, C:0.08, G:0.30, T:0.38
Consensus pattern (83 bp):
TATTCTATTGTGCATGAAAATTTCGTTAATGAAGGCTTGTTTTAGTGGTTAAATGTGCTGAGAAG
TGTTGGAGAAGTCCTGGG
Found at i:22282690 original size:13 final size:13
Alignment explanation
Indices: 22282672--22282696 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22282662 ATGATGGAGG
22282672 GATCCCACATCGA
1 GATCCCACATCGA
22282685 GATCCCACATCG
1 GATCCCACATCG
22282697 GGAAGCTAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.28, C:0.40, G:0.16, T:0.16
Consensus pattern (13 bp):
GATCCCACATCGA
Found at i:22283153 original size:27 final size:27
Alignment explanation
Indices: 22283131--22283282 Score: 207
Period size: 27 Copynumber: 5.6 Consensus size: 27
22283121 TTAGTTTACC
22283131 AAATTACCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
22283158 AAATTACTAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTAGTTTGTA
* * *
22283185 AAATCACCAGAATACCCCTGGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
22283212 AAATTATCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTAGTTTGTA
*
22283239 AAATTACCAAAATACCCCT-GATTTGTG
1 AAATTACCAAAATACCCCTAG-TTTGTA
*
22283266 AAATTACTAAAATACCC
1 AAATTACCAAAATACCC
22283283 TCGACCTGTA
Statistics
Matches: 110, Mismatches: 14, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
26 1 0.01
27 109 0.99
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCCTAGTTTGTA
Found at i:22283280 original size:81 final size:81
Alignment explanation
Indices: 22283131--22283367 Score: 253
Period size: 81 Copynumber: 2.9 Consensus size: 81
22283121 TTAGTTTACC
* * * *
22283131 AAATTACCAAAATACCCCTAGTTTGTAAAATTACTAAAATACCCCTGGTTTATAAAATCACCAGA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAATCACCAAA
***
22283196 ATACCC-CTGGTTTGTA
66 ATACCCTC-GACCTGTA
* * * *
22283212 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTGTGAAATTACTAAA
1 AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAATCACCAAA
22283277 ATACCCTCGACCTGTA
66 ATACCCTCGACCTGTA
** * * * * * * *
22283293 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTATAGAATTACCAT
1 AAATTATCAAAATACCCCTAG-TTTGTAAAATTACCAAAATACCCCTGATTTATAAAATCACCAA
*
22283357 TATACCCTCGA
65 AATACCCTCGA
22283368 TTTACAAAAT
Statistics
Matches: 131, Mismatches: 23, Indels: 4
0.83 0.15 0.03
Matches are distributed among these distances:
80 5 0.04
81 125 0.95
82 1 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (81 bp):
AAATTATCAAAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTGATTTATAAAATCACCAAA
ATACCCTCGACCTGTA
Found at i:22283293 original size:54 final size:53
Alignment explanation
Indices: 22283131--22283355 Score: 204
Period size: 54 Copynumber: 4.2 Consensus size: 53
22283121 TTAGTTTACC
* *
22283131 AAATTACCAAAATACCCCT-AGTTTGTAAAATTACTAAAATACCCCTGGTTTATA
1 AAATTACCAAAATACCCCTGA-TTTGTAAAATTACTAAAATACCCC-GATTTGTA
* * * *
22283185 AAATCACCAGAATACCCCTGGTTTGTAAAATTA-TCAAAATACCCCTAGTTTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACT-AAAATACCCCGA-TTTGTA
* **
22283239 AAATTACCAAAATACCCCTGATTTGTGAAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCC-CGATTTGTA
*** * * * * *
22283293 AAATTATTGAAATA-CCCTCGACTTGTAAAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCCT-GATTTGTAAAATTACTAAAATACCC-CGATTTGTA
*
22283347 GAATTACCA
1 AAATTACCA
22283356 TTATACCCTC
Statistics
Matches: 137, Mismatches: 28, Indels: 12
0.77 0.16 0.07
Matches are distributed among these distances:
53 5 0.04
54 129 0.94
55 3 0.02
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.30
Consensus pattern (53 bp):
AAATTACCAAAATACCCCTGATTTGTAAAATTACTAAAATACCCCGATTTGTA
Found at i:22283296 original size:27 final size:27
Alignment explanation
Indices: 22283131--22283390 Score: 152
Period size: 27 Copynumber: 9.6 Consensus size: 27
22283121 TTAGTTTACC
* *
22283131 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-CTTGTA
* ** *
22283158 AAATTACTAAAATACCC-CTGGTTTATA
1 AAATTACCAAAATACCCTC-GACTTGTA
* * **
22283185 AAATCACCAGAATACCC-CTGGTTTGTA
1 AAATTACCAAAATACCCTC-GACTTGTA
* * *
22283212 AAATTATCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-CTTGTA
* *
22283239 AAATTACCAAAATACCC-CTGATTTGTG
1 AAATTACCAAAATACCCTC-GACTTGTA
* *
22283266 AAATTACTAAAATACCCTCGACCTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
***
22283293 AAATTATTGAAATACCCTCGACTTGTA
1 AAATTACCAAAATACCCTCGACTTGTA
* * * *
22283320 AAATTACCAAAGTACCCTTGATTTATA
1 AAATTACCAAAATACCCTCGACTTGTA
* ** * **
22283347 GAATTACCATTATACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGACTTGTA
**
22283374 AAATTACCGGAATACCC
1 AAATTACCAAAATACCC
22283391 CTGTAGGGTA
Statistics
Matches: 189, Mismatches: 40, Indels: 8
0.80 0.17 0.03
Matches are distributed among these distances:
27 187 0.99
28 2 0.01
ACGTcount: A:0.38, C:0.22, G:0.09, T:0.30
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGACTTGTA
Found at i:22283405 original size:27 final size:27
Alignment explanation
Indices: 22283375--22283541 Score: 176
Period size: 27 Copynumber: 6.3 Consensus size: 27
22283365 CGATTTACAA
*
22283375 AATTACCGGAATACCCCTGTAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* *
22283402 AATTACCGAAATATCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
22283429 AATTATCGCAATACCCCTATAGGGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * *
22283456 AGTTACCGAAATACCTCTGTAGAGTAG
1 AATTACCGAAATACCCCTGTAGGGTAG
** *
22283483 AATTACTAAAATACCCCTG-AGGGTGG
1 AATTACCGAAATACCCCTGTAGGGTAG
* * * *
22283509 AATTACCGAGATA-CCTTGTGGGGTAA
1 AATTACCGAAATACCCCTGTAGGGTAG
22283535 AATTACC
1 AATTACC
22283542 ATTTTGCCCC
Statistics
Matches: 114, Mismatches: 25, Indels: 3
0.80 0.18 0.02
Matches are distributed among these distances:
25 4 0.04
26 26 0.23
27 84 0.74
ACGTcount: A:0.34, C:0.20, G:0.22, T:0.25
Consensus pattern (27 bp):
AATTACCGAAATACCCCTGTAGGGTAG
Found at i:22285719 original size:22 final size:22
Alignment explanation
Indices: 22285691--22285812 Score: 61
Period size: 22 Copynumber: 5.3 Consensus size: 22
22285681 TTCCACATCC
22285691 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
** * * *
22285713 ATCACATATATACACTTTC-ACATT
1 ATCACAT-T-GGC-CATTCGGCCTT
22285737 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
* * * *
22285760 ATCTCATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
22285784 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
22285807 ATCACA
1 ATCACA
22285813 CATACACATG
Statistics
Matches: 70, Mismatches: 18, Indels: 24
0.62 0.16 0.21
Matches are distributed among these distances:
22 26 0.37
23 12 0.17
24 12 0.17
25 20 0.29
ACGTcount: A:0.25, C:0.30, G:0.11, T:0.34
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:22285726 original size:47 final size:47
Alignment explanation
Indices: 22285663--22285919 Score: 365
Period size: 47 Copynumber: 5.4 Consensus size: 47
22285653 CCCTTCGGGA
* * *
22285663 CTTATCACATTTATACACTTCCACATCCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
22285710 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
22285757 CTTATCTCATATATGCA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
22285804 CTTATCACACATACACA-TGTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCACATATATACACT-TTCACATTCATCACATTGGCCATTCGGC
* *
22285851 CTTATCACGCATATATATACTTTCACATTCATCACATTGGCCACTCGGC
1 CTTATCA--CATATATACACTTTCACATTCATCACATTGGCCATTCGGC
* *
22285900 CCTATCACATATATATACTT
1 CTTATCACATATATACACTT
22285920 GTACATCAAT
Statistics
Matches: 192, Mismatches: 14, Indels: 8
0.90 0.07 0.04
Matches are distributed among these distances:
46 1 0.01
47 150 0.78
49 40 0.21
50 1 0.01
ACGTcount: A:0.27, C:0.30, G:0.09, T:0.33
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATTGGCCATTCGGC
Found at i:22288554 original size:22 final size:22
Alignment explanation
Indices: 22288526--22288585 Score: 68
Period size: 22 Copynumber: 2.7 Consensus size: 22
22288516 GCTTTCTGAT
* *
22288526 TATGGCTTTGTGTCAACCTACA
1 TATGGCTCTGTGCCAACCTACA
22288548 TATGGCTCTGTGCCAACCTA-A
1 TATGGCTCTGTGCCAACCTACA
* *
22288569 TTATGGTTGTGTGCCAA
1 -TATGGCTCTGTGCCAA
22288586 ACGTATTTGT
Statistics
Matches: 33, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
21 1 0.03
22 32 0.97
ACGTcount: A:0.22, C:0.22, G:0.22, T:0.35
Consensus pattern (22 bp):
TATGGCTCTGTGCCAACCTACA
Found at i:22288774 original size:27 final size:27
Alignment explanation
Indices: 22288744--22288845 Score: 125
Period size: 27 Copynumber: 3.8 Consensus size: 27
22288734 ATTCTGTTAA
* *
22288744 GTGGCTTTGCCACATTATCTGTTTCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
22288771 GTGGCTATGCCACAAATATCTG-TTCCG
1 GTGGCTCTGCCAC-AATATCTGTTTCTG
*
22288798 GTGGCTCTGCCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTGTTTCTG
* *
22288825 GTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTG
22288846 ATAACTGAGC
Statistics
Matches: 65, Mismatches: 8, Indels: 4
0.84 0.10 0.05
Matches are distributed among these distances:
26 8 0.12
27 50 0.77
28 7 0.11
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (27 bp):
GTGGCTCTGCCACAATATCTGTTTCTG
Found at i:22288802 original size:54 final size:53
Alignment explanation
Indices: 22288744--22288845 Score: 141
Period size: 54 Copynumber: 1.9 Consensus size: 53
22288734 ATTCTGTTAA
* * * *
22288744 GTGGCTTTGCCACATTATCTGTTTCTGGTGGCTATGCCACAAATATCTGTTCCG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCAC-AATATCTGTTCCG
* *
22288798 GTGGCTCTGCCACAATATCTGTATCTGGTGACTCTGTCACAATATCTG
1 GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTG
22288846 ATAACTGAGC
Statistics
Matches: 42, Mismatches: 6, Indels: 1
0.86 0.12 0.02
Matches are distributed among these distances:
53 8 0.19
54 34 0.81
ACGTcount: A:0.19, C:0.25, G:0.22, T:0.35
Consensus pattern (53 bp):
GTGGCTCTGCCACAATATCTGTATCTGGTGACTATGCCACAATATCTGTTCCG
Found at i:22290445 original size:13 final size:13
Alignment explanation
Indices: 22290427--22290451 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22290417 TAATGGTATA
22290427 TTGAATCCATGAC
1 TTGAATCCATGAC
22290440 TTGAATCCATGA
1 TTGAATCCATGA
22290452 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:22291032 original size:27 final size:27
Alignment explanation
Indices: 22290997--22291175 Score: 182
Period size: 27 Copynumber: 6.6 Consensus size: 27
22290987 TTAAATTGTA
22290997 TAGCACTAAGTGTGCGATATGACTATG
1 TAGCACTAAGTGTGCGATATGACTATG
* * *
22291024 TTGCACTAAGTGTGCGAAATGAATATG
1 TAGCACTAAGTGTGCGATATGACTATG
*
22291051 -ATGCACTAAGTGTGCGA-ATTGACCATG
1 TA-GCACTAAGTGTGCGATA-TGACTATG
** *
22291078 CGGCACTAAGTGTGCGAGTTTGACTATG
1 TAGCACTAAGTGTGCGA-TATGACTATG
* * *
22291106 TAGCACTAAGTGTGCGATTTGATTACG
1 TAGCACTAAGTGTGCGATATGACTATG
* * * *
22291133 TAGCACTAAGTGTGAGAGATGATTATA
1 TAGCACTAAGTGTGCGATATGACTATG
*
22291160 TAGCACTGAGTGTGCG
1 TAGCACTAAGTGTGCG
22291176 GGCTCAATAT
Statistics
Matches: 127, Mismatches: 20, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.82
28 22 0.17
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
TAGCACTAAGTGTGCGATATGACTATG
Found at i:22291166 original size:82 final size:81
Alignment explanation
Indices: 22290995--22291175 Score: 204
Period size: 82 Copynumber: 2.2 Consensus size: 81
22290985 GATTAAATTG
* *
22290995 TATAGCACTAAGTGTGCGATATGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
*
22291060 GTGTGCGAATTGACCA
66 GTGTGAGAATTGACCA
*** * ** *
22291076 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TATAGCACTAAGTGTGCGA-TATGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
**
22291140 AAGTGTGAGAGA-TGATTA
64 AAGTGTGAGA-ATTGACCA
*
22291158 TATAGCACTGAGTGTGCG
1 TATAGCACTAAGTGTGCG
22291176 GGCTCAATAT
Statistics
Matches: 81, Mismatches: 16, Indels: 5
0.79 0.16 0.05
Matches are distributed among these distances:
81 17 0.21
82 63 0.78
83 1 0.01
ACGTcount: A:0.29, C:0.14, G:0.28, T:0.29
Consensus pattern (81 bp):
TATAGCACTAAGTGTGCGATATGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGAGAATTGACCA
Found at i:22292835 original size:19 final size:19
Alignment explanation
Indices: 22292807--22292851 Score: 83
Period size: 19 Copynumber: 2.4 Consensus size: 19
22292797 AAATAAAAAA
22292807 GAAA-TAATAGTGAAATGT
1 GAAATTAATAGTGAAATGT
22292825 GAAATTAATAGTGAAATGT
1 GAAATTAATAGTGAAATGT
22292844 GAAATTAA
1 GAAATTAA
22292852 CTTTATTTAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
18 4 0.15
19 22 0.85
ACGTcount: A:0.51, C:0.00, G:0.20, T:0.29
Consensus pattern (19 bp):
GAAATTAATAGTGAAATGT
Found at i:22292891 original size:26 final size:26
Alignment explanation
Indices: 22292862--22292916 Score: 92
Period size: 26 Copynumber: 2.1 Consensus size: 26
22292852 CTTTATTTAT
*
22292862 TTATCTTTCAAATAAATAGAAAACAA
1 TTATCGTTCAAATAAATAGAAAACAA
*
22292888 TTATCGTTCAATTAAATAGAAAACAA
1 TTATCGTTCAAATAAATAGAAAACAA
22292914 TTA
1 TTA
22292917 CATGTTTACT
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.51, C:0.11, G:0.05, T:0.33
Consensus pattern (26 bp):
TTATCGTTCAAATAAATAGAAAACAA
Found at i:22295937 original size:79 final size:80
Alignment explanation
Indices: 22295801--22295985 Score: 216
Period size: 79 Copynumber: 2.3 Consensus size: 80
22295791 TTGAATGATG
* *
22295801 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
22295866 GTGCGAGATACTA-A
66 GTGCGAGATACTATA
* * * **
22295880 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
22295942 ATTGTGCGAGTTACTATA
63 ATTGTGCGAGATACTATA
* *
22295960 ACCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGC-TTTG
22295986 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 32 0.36
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAATT
GTGCGAGATACTATA
Found at i:22295992 original size:40 final size:40
Alignment explanation
Indices: 22295801--22295985 Score: 216
Period size: 40 Copynumber: 4.7 Consensus size: 40
22295791 TTGAATGATG
* * * *
22295801 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22295841 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
22295881 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22295920 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
22295961 -CCGGGCTATGTCCCGAAGGCGTTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22295986 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 16, Indels: 10
0.83 0.11 0.07
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22296007 original size:79 final size:79
Alignment explanation
Indices: 22295854--22296018 Score: 192
Period size: 79 Copynumber: 2.1 Consensus size: 79
22295844 GGACTAAGAT
* * **
22295854 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
22295919 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* * *
22295933 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCGTTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
22295996 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
22296012 CCGAAGG
1 CCGAAGG
22296019 TACGTGATTT
Statistics
Matches: 73, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 24 0.33
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:22300934 original size:48 final size:49
Alignment explanation
Indices: 22300863--22300988 Score: 140
Period size: 48 Copynumber: 2.7 Consensus size: 49
22300853 TAAGATGCCA
* *
22300863 ATGCCATGTCCCAA-AAATGGTCTTACACTAGCACTCATCTCAATGT-C-G
1 ATGCCATGT-CCAAGACATGGTCTTACACTAGCACTC-TCACAATGTGCTG
*
22300911 ATGCCATGTCCAAGACATGGTCTTACACT-G-GCTCTCACAATGTGGCTG
1 ATGCCATGTCCAAGACATGGTCTTACACTAGCACTCTCACAATGT-GCTG
*
22300959 ATG-CATGTCCCAGACAT-GTCTTACACTAGC
1 ATGCCATGTCCAAGACATGGTCTTACACTAGC
22300989 TCACAATAGC
Statistics
Matches: 68, Mismatches: 4, Indels: 12
0.81 0.05 0.14
Matches are distributed among these distances:
45 8 0.12
46 13 0.19
47 20 0.29
48 27 0.40
ACGTcount: A:0.26, C:0.29, G:0.18, T:0.27
Consensus pattern (49 bp):
ATGCCATGTCCAAGACATGGTCTTACACTAGCACTCTCACAATGTGCTG
Found at i:22307617 original size:45 final size:45
Alignment explanation
Indices: 22307552--22307722 Score: 179
Period size: 45 Copynumber: 3.7 Consensus size: 45
22307542 GCATATCTAT
22307552 GCCGATGCCATGTCCCAGACATGGTCTTACACTGACACATCTCGTA-
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTGACACATCTCG-AG
* *
22307598 GCCGATG-CATGTCCCAGACATGTCTTACATTGACTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGTCTTACACTGAC--ACATCTCGAG
* * * * * *
22307644 GCTGAT-ACATG-CCCAAACATGTCTTACACTAGCACTCATCTCAAT
1 GCCGATGCCATGTCCCAGACATGTCTTACACT-G-ACACATCTCGAG
22307689 GCCGATGCCATGTCCCAGACATGGTCTTACACTG
1 GCCGATGCCATGTCCCAGACAT-GTCTTACACTG
22307723 GTTCTCACAA
Statistics
Matches: 104, Mismatches: 12, Indels: 17
0.78 0.09 0.13
Matches are distributed among these distances:
44 12 0.12
45 43 0.41
46 28 0.27
47 11 0.11
48 10 0.10
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.26
Consensus pattern (45 bp):
GCCGATGCCATGTCCCAGACATGTCTTACACTGACACATCTCGAG
Found at i:22307641 original size:46 final size:47
Alignment explanation
Indices: 22307502--22307719 Score: 175
Period size: 45 Copynumber: 4.7 Consensus size: 47
22307492 GGGGTAAGAT
* ** * * *
22307502 GCCGATGCCATGTCCCAAACATGGTCTTACA-CAAGCTTTAGCATATCTAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGA-C--TA-CATCTCGAG
*
22307552 GCCGATGCCATGTCCCAGACATGGTCTTACACTGAC-ACATCTCGTA-
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGACTACATCTCG-AG
*
22307598 GCCGATG-CATGTCCCAGACAT-GTCTTACATTGACTTACGTCTCGAG
1 GCCGATGCCATGTCCCAGACATGGTCTTACATTGAC-TACATCTCGAG
* * * * * *
22307644 GCTGAT-ACATG-CCCAAACAT-GTCTTACACTAGCACT-CATCTCAAT
1 GCCGATGCCATGTCCCAGACATGGTCTTACA-TTG-ACTACATCTCGAG
22307689 GCCGATGCCATGTCCCAGACATGGTCTTACA
1 GCCGATGCCATGTCCCAGACATGGTCTTACA
22307720 CTGGTTCTCA
Statistics
Matches: 141, Mismatches: 16, Indels: 24
0.78 0.09 0.13
Matches are distributed among these distances:
44 12 0.09
45 42 0.30
46 35 0.25
47 12 0.09
48 8 0.06
50 31 0.22
51 1 0.01
ACGTcount: A:0.26, C:0.30, G:0.18, T:0.26
Consensus pattern (47 bp):
GCCGATGCCATGTCCCAGACATGGTCTTACATTGACTACATCTCGAG
Found at i:22315753 original size:28 final size:28
Alignment explanation
Indices: 22315718--22315779 Score: 106
Period size: 28 Copynumber: 2.2 Consensus size: 28
22315708 AATGTGACCA
*
22315718 TGTGTCGCACATGGCTAAGACACACGCC
1 TGTGTCGCACACGGCTAAGACACACGCC
*
22315746 TGTGTCGCACACGGCTAAGACACATGCC
1 TGTGTCGCACACGGCTAAGACACACGCC
22315774 TGTGTC
1 TGTGTC
22315780 TCTGCCTGTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 32 1.00
ACGTcount: A:0.23, C:0.31, G:0.26, T:0.21
Consensus pattern (28 bp):
TGTGTCGCACACGGCTAAGACACACGCC
Found at i:22320690 original size:27 final size:27
Alignment explanation
Indices: 22320633--22320783 Score: 112
Period size: 27 Copynumber: 5.6 Consensus size: 27
22320623 CATGATAGCT
* * *
22320633 AAAGAATAGCCTTTGTGGCA-AATTTTG
1 AAAGAATAGCCTTTGTGG-AGAACTCTA
*
22320660 AAAGAATAGCCATTGTGGAGAACTCTA
1 AAAGAATAGCCTTTGTGGAGAACTCTA
* * **
22320687 AAAGGATAGTC-TTGTGTTGAACTCTA
1 AAAGAATAGCCTTTGTGGAGAACTCTA
* * *
22320713 AAAGAATAACCTTTGT-GATGAATTCTG
1 AAAGAATAGCCTTTGTGGA-GAACTCTA
* * * *
22320740 AAAGACTAGTCTTTGTGGTGAACTTTA
1 AAAGAATAGCCTTTGTGGAGAACTCTA
22320767 AAAGAA-ATGCCTTTGTG
1 AAAGAATA-GCCTTTGTG
22320784 AAAAATTCTG
Statistics
Matches: 95, Mismatches: 24, Indels: 10
0.74 0.19 0.08
Matches are distributed among these distances:
26 23 0.24
27 71 0.75
28 1 0.01
ACGTcount: A:0.34, C:0.12, G:0.22, T:0.32
Consensus pattern (27 bp):
AAAGAATAGCCTTTGTGGAGAACTCTA
Found at i:22320717 original size:53 final size:54
Alignment explanation
Indices: 22320660--22320772 Score: 133
Period size: 53 Copynumber: 2.1 Consensus size: 54
22320650 GCAAATTTTG
* *
22320660 AAAGAATAGCCATTGTGGA-GAACTCTAAAAGGA-TAGTC-TTGTGTTGAACTCTA
1 AAAGAATAACCATTGT-GATGAACTCTAAAA-GACTAGTCTTTGTGGTGAACTCTA
* * * *
22320713 AAAGAATAACCTTTGTGATGAATTCTGAAAGACTAGTCTTTGTGGTGAACTTTA
1 AAAGAATAACCATTGTGATGAACTCTAAAAGACTAGTCTTTGTGGTGAACTCTA
22320767 AAAGAA
1 AAAGAA
22320773 ATGCCTTTGT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
52 4 0.08
53 28 0.55
54 19 0.37
ACGTcount: A:0.37, C:0.12, G:0.21, T:0.30
Consensus pattern (54 bp):
AAAGAATAACCATTGTGATGAACTCTAAAAGACTAGTCTTTGTGGTGAACTCTA
Found at i:22320780 original size:54 final size:53
Alignment explanation
Indices: 22320693--22320795 Score: 136
Period size: 54 Copynumber: 1.9 Consensus size: 53
22320683 TCTAAAAGGA
* **
22320693 TAGTCTTGTGTTGAACTCTAAAAGAATAACCTTTGTGATGAATTCTGAAAGAC
1 TAGTCTTGTGGTGAACTCTAAAAGAATAACCTTTGTGAAAAATTCTGAAAGAC
* *
22320746 TAGTCTTTGTGGTGAACTTTAAAAGAA-ATGCCTTTGTGAAAAATTCTGAA
1 TAGTC-TTGTGGTGAACTCTAAAAGAATA-ACCTTTGTGAAAAATTCTGAA
22320796 TAGATCACCT
Statistics
Matches: 43, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
53 6 0.14
54 37 0.86
ACGTcount: A:0.34, C:0.12, G:0.19, T:0.35
Consensus pattern (53 bp):
TAGTCTTGTGGTGAACTCTAAAAGAATAACCTTTGTGAAAAATTCTGAAAGAC
Found at i:22322722 original size:90 final size:90
Alignment explanation
Indices: 22322627--22322793 Score: 203
Period size: 90 Copynumber: 1.9 Consensus size: 90
22322617 AGATCCTATG
* * * * * *
22322627 TAAGACCATATCAGGGATAAGGCTTC-GACATC-ATTAAGTGATTTCGTATAAGACCATATTTGG
1 TAAGACCATATCAGGGACAAGGCGTCAG-CACCAATT-AGAGACTTCGTATAAGACCATATCTGG
22322690 GACATGGCATCGATATGAGGTCCCGTA
64 GACATGGCATCGATATGAGGTCCCGTA
* * * *
22322717 TAAGACCATGTCTGGGACATGGCGTCAGCACCAATTCGAGACTTCGTATAAGACCATATCTGGGA
1 TAAGACCATATCAGGGACAAGGCGTCAGCACCAATTAGAGACTTCGTATAAGACCATATCTGGGA
*
22322782 TATGGCATCGAT
66 CATGGCATCGAT
22322794 GTTCGGTTCC
Statistics
Matches: 64, Mismatches: 11, Indels: 4
0.81 0.14 0.05
Matches are distributed among these distances:
90 60 0.94
91 4 0.06
ACGTcount: A:0.30, C:0.20, G:0.24, T:0.26
Consensus pattern (90 bp):
TAAGACCATATCAGGGACAAGGCGTCAGCACCAATTAGAGACTTCGTATAAGACCATATCTGGGA
CATGGCATCGATATGAGGTCCCGTA
Found at i:22322733 original size:42 final size:42
Alignment explanation
Indices: 22322671--22322829 Score: 122
Period size: 42 Copynumber: 3.6 Consensus size: 42
22322661 TAAGTGATTT
*
22322671 CGTATAAGACCATATTTGGGACATGGCATCGATATGAGGTCC
1 CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
* * * * *
22322713 CGTATAAGACCATGTCTGGGACATGGCGTCAGCACCAATTCGA-GACTT
1 CGTATAAGACCATATCTGGGACATGGCATC-G-A--TA-T-GAGGTC-C
* * ** *
22322761 CGTATAAGACCATATCTGGGATATGGCATCGATGTTCGGTTC
1 CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
* * *
22322803 CATCTAAGACCATGTCTGGGACATGGC
1 CGTATAAGACCATATCTGGGACATGGC
22322830 TTTGGTACCT
Statistics
Matches: 89, Mismatches: 20, Indels: 16
0.71 0.16 0.13
Matches are distributed among these distances:
42 50 0.56
43 3 0.03
44 1 0.01
46 2 0.02
47 4 0.04
48 29 0.33
ACGTcount: A:0.26, C:0.22, G:0.26, T:0.26
Consensus pattern (42 bp):
CGTATAAGACCATATCTGGGACATGGCATCGATATGAGGTCC
Found at i:22324712 original size:77 final size:78
Alignment explanation
Indices: 22324543--22324733 Score: 192
Period size: 77 Copynumber: 2.5 Consensus size: 78
22324533 CAAACATAAC
* * * * * * *
22324543 ACCAGCACCAAGCCTACG-GGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGTGGGATTT
1 ACCAGCACGAAGCCTGCGAGGA-TTTAAGCCCGGATATAATACCAGCACGAAGCCTGTGGGATTT
*
22324607 AACCTGGATAAAAT
65 AACCCGGATAAAAT
* *
22324621 ACTAGCACGAAGCCTGCG-GGATTTAA-CCCGGATATAATACCAGCACGAAGCCTGCTGGGTTTT
1 ACCAGCACGAAGCCTGCGAGGATTTAAGCCCGGATATAATACCAGCACGAAGCCTG-TGGGATTT
*
22324684 AACCCGGATATAAT
65 AACCCGGATAAAAT
* * **
22324698 TCCAGCA-TATAGCCTGCGAGTCTTTAAGCCCGGATA
1 ACCAGCACGA-AGCCTGCGAGGATTTAAGCCCGGATA
22324734 CACATCAAAT
Statistics
Matches: 94, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
76 25 0.27
77 37 0.39
78 24 0.26
79 8 0.09
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.23
Consensus pattern (78 bp):
ACCAGCACGAAGCCTGCGAGGATTTAAGCCCGGATATAATACCAGCACGAAGCCTGTGGGATTTA
ACCCGGATAAAAT
Found at i:22324714 original size:39 final size:38
Alignment explanation
Indices: 22324538--22324704 Score: 190
Period size: 38 Copynumber: 4.3 Consensus size: 38
22324528 AAACCCAAAC
* * * * *
22324538 ATAACACCAGCACCAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* * * *
22324578 ATAATACCAGCACTAGGCCTGTGGGATTTAACCTGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
22324616 AAAATACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
22324654 ATAATACCAGCACGAAGCCTGCTGGGTTTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGC-GGGATTTAACCCGGAT
*
22324693 ATAATTCCAGCA
1 ATAATACCAGCA
22324705 TATAGCCTGC
Statistics
Matches: 108, Mismatches: 18, Indels: 3
0.84 0.14 0.02
Matches are distributed among these distances:
38 58 0.54
39 29 0.27
40 21 0.19
ACGTcount: A:0.33, C:0.25, G:0.20, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:22324724 original size:39 final size:39
Alignment explanation
Indices: 22324575--22324733 Score: 155
Period size: 38 Copynumber: 4.1 Consensus size: 39
22324565 TTTAAACTCA
* * * * *
22324575 GATATAATACCAGCACTAGGCCTG-TGGGATTTAACCTG
1 GATATAATACCAGCACGAAGCCTGCTGAGTTTTAACCCG
* * * *
22324613 GATAAAATACTAGCACGAAGCCTGC-GGGATTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCTGAGTTTTAACCCG
*
22324651 GATATAATACCAGCACGAAGCCTGCTGGGTTTTAACCCG
1 GATATAATACCAGCACGAAGCCTGCTGAGTTTTAACCCG
* *
22324690 GATATAATTCCAGCA-TATAGCCTGC-GAGTCTTTAAGCCCG
1 GATATAATACCAGCACGA-AGCCTGCTGAGT-TTTAA-CCCG
22324730 GATA
1 GATA
22324734 CACATCAAAT
Statistics
Matches: 105, Mismatches: 11, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
38 59 0.56
39 38 0.36
40 8 0.08
ACGTcount: A:0.30, C:0.23, G:0.23, T:0.24
Consensus pattern (39 bp):
GATATAATACCAGCACGAAGCCTGCTGAGTTTTAACCCG
Found at i:22328937 original size:57 final size:58
Alignment explanation
Indices: 22328866--22328974 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 58
22328856 GCCCACTGAT
* *
22328866 CGATCTCGCACACATAGTGCTCGGTTGAAG-AACTCGTACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGCAACTCGCACACACAGTGCCTCAATTAC
* * * * *
22328923 CGATTTCGTACACATTGTGCTCGGTTAAAGCAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGCAACTCGCACACACAGTGCCTC
22328975 TAATCATTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 26 0.59
58 18 0.41
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAGCAACTCGCACACACAGTGCCTCAATTAC
Found at i:22329189 original size:43 final size:43
Alignment explanation
Indices: 22329128--22329478 Score: 558
Period size: 43 Copynumber: 8.2 Consensus size: 43
22329118 CCTTGCTCGA
** * *
22329128 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* * *
22329171 ATCACTGGCACGGAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* **
22329214 ATCACCGACACGAAGCCTGCTAGGCATGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
*
22329257 ATCACCGGCACGAAGCCTGCTAGGCATAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
*
22329300 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
22329343 ATCACCAGCACAAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
22329386 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
22329429 ATCACCGGTACGAAGCCTGCAAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
22329472 ATCACCG
1 ATCACCG
22329479 AGTTTCATGC
Statistics
Matches: 288, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 288 1.00
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
Found at i:22330576 original size:131 final size:133
Alignment explanation
Indices: 22330317--22330583 Score: 484
Period size: 131 Copynumber: 2.0 Consensus size: 133
22330307 TAAGATGCCA
22330317 TATTCGCATGGCTTATATACAATAATCAAAATATCATTCTATTTATAGTCTATCCTATACAAGCC
1 TATTCGCATGGCTTATATACAATAATCAAAATATCATTCTATTTATAGTCTATCCTAT--AA-CC
22330382 ATAAGCTAAGTCCAAATCACATGATTACTACAATAGTAGATAGTGTGACGAAGTGCTGACGATCC
63 ATAAGCTAAGTCCAAATCACATGATTACTACAATAGTAGATAGTGTGACGAAGTGCTGACGATCC
22330447 CCGAGC
128 CCGAGC
22330453 TATTCGCATGGCTTATATACAATAATCAAAATATCATTCTATTTATAGTCTATCCTAT-A-CATA
1 TATTCGCATGGCTTATATACAATAATCAAAATATCATTCTATTTATAGTCTATCCTATAACCATA
*
22330516 AGCTAAGTCCAAATCACATGATTACTACAATAGTAGATAGTGTGACGAAGTGCTGGCGATCCCCG
66 AGCTAAGTCCAAATCACATGATTACTACAATAGTAGATAGTGTGACGAAGTGCTGACGATCCCCG
22330581 AGC
131 AGC
22330584 AAATAGTAAG
Statistics
Matches: 130, Mismatches: 1, Indels: 5
0.96 0.01 0.04
Matches are distributed among these distances:
131 71 0.55
133 1 0.01
136 58 0.45
ACGTcount: A:0.35, C:0.20, G:0.15, T:0.30
Consensus pattern (133 bp):
TATTCGCATGGCTTATATACAATAATCAAAATATCATTCTATTTATAGTCTATCCTATAACCATA
AGCTAAGTCCAAATCACATGATTACTACAATAGTAGATAGTGTGACGAAGTGCTGACGATCCCCG
AGC
Found at i:22331256 original size:38 final size:38
Alignment explanation
Indices: 22331182--22331332 Score: 203
Period size: 38 Copynumber: 3.9 Consensus size: 38
22331172 ACATAACACC
* * * *
22331182 AGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACC
1 AGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATACA
* * * *
22331222 AGCACTAGGCCTGTGGGATTTAACCCGGATATAATACT
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACA
*
22331260 AGCACGAAGCCTGCGGGATTTAACCCGGATATATTACA
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACA
22331298 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
1 AGCACGAAGCCTGCGGGATTTAACCCGGATATAAT
22331333 TCCAACATAT
Statistics
Matches: 98, Mismatches: 13, Indels: 2
0.87 0.12 0.02
Matches are distributed among these distances:
38 81 0.83
39 3 0.03
40 14 0.14
ACGTcount: A:0.32, C:0.23, G:0.23, T:0.22
Consensus pattern (38 bp):
AGCACGAAGCCTGCGGGATTTAACCCGGATATAATACA
Found at i:22331347 original size:38 final size:38
Alignment explanation
Indices: 22331184--22331368 Score: 176
Period size: 38 Copynumber: 4.8 Consensus size: 38
22331174 ATAACACCAG
* * * * *
22331184 CACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAG
1 CACGAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAA
* * * * * *
22331224 CACTAGGCCTGTGGGATTTAACCCGGATATAATACTAG
1 CACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAA
*
22331262 CACGAAGCCTGCGGGATTTAACCCGGATAT-ATTACAA
1 CACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAA
22331299 GCACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAA
1 -CACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAA
* *
22331338 CA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 CACGA-AGCCTGCGGG-ATTTAA-CCCGGATA
22331369 CACATCAAAT
Statistics
Matches: 123, Mismatches: 17, Indels: 10
0.82 0.11 0.07
Matches are distributed among these distances:
37 4 0.03
38 85 0.69
39 14 0.11
40 20 0.16
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (38 bp):
CACGAAGCCTGCGGGATTTAACCCGGATATAATTCCAA
Found at i:22331347 original size:76 final size:78
Alignment explanation
Indices: 22331174--22331368 Score: 200
Period size: 76 Copynumber: 2.5 Consensus size: 78
22331164 AAACCCAAAC
* * * * * * * * * *
22331174 ATAACACCAGCACGAAGCCTACGGG-ACTTTAAACTCAGATATAATACCAGCACTAGGCCTGTGG
1 ATAATACCAACACGAAGCCTGCGGGTA-TTTAAGCCCGGATATAATACAAGCACGAAGCCTGCGG
22331238 GATTTAACCCGGAT
65 GATTTAACCCGGAT
* * *
22331252 ATAATACTAGCACGAAGCCTGCGGG-ATTTAA-CCCGGATATATTACAAGCACGAAGCCTGCGGG
1 ATAATACCAACACGAAGCCTGCGGGTATTTAAGCCCGGATATAATACAAGCACGAAGCCTGCGGG
22331315 ATTTAACCCGGAT
66 ATTTAACCCGGAT
* * *
22331328 ATAATTCCAACA-TATAGCCTGCGGGTCTTTAAGCCCGGATA
1 ATAATACCAACACGA-AGCCTGCGGGTATTTAAGCCCGGATA
22331369 CACATCAAAT
Statistics
Matches: 99, Mismatches: 15, Indels: 6
0.82 0.12 0.05
Matches are distributed among these distances:
75 1 0.01
76 57 0.58
77 10 0.10
78 31 0.31
ACGTcount: A:0.32, C:0.25, G:0.22, T:0.22
Consensus pattern (78 bp):
ATAATACCAACACGAAGCCTGCGGGTATTTAAGCCCGGATATAATACAAGCACGAAGCCTGCGGG
ATTTAACCCGGAT
Found at i:22335571 original size:57 final size:58
Alignment explanation
Indices: 22335500--22335608 Score: 148
Period size: 57 Copynumber: 1.9 Consensus size: 58
22335490 GCCCACTGAT
* *
22335500 CGATCTCGCACACATAGTGCTCGGTTGAAG-AACTCGTACACACAGTGCCTCAATTAC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGCAACTCGCACACACAGTGCCTCAATTAC
* * * * *
22335557 CGATTTCGTACACATTGTGCTCGGTTAAAGCAATTTGCACACACAGTGCCTC
1 CGATCTCGCACACATAGTGCTCGGTTAAAGCAACTCGCACACACAGTGCCTC
22335609 TAATCATTCG
Statistics
Matches: 44, Mismatches: 7, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
57 26 0.59
58 18 0.41
ACGTcount: A:0.27, C:0.28, G:0.19, T:0.26
Consensus pattern (58 bp):
CGATCTCGCACACATAGTGCTCGGTTAAAGCAACTCGCACACACAGTGCCTCAATTAC
Found at i:22335823 original size:43 final size:43
Alignment explanation
Indices: 22335762--22336112 Score: 558
Period size: 43 Copynumber: 8.2 Consensus size: 43
22335752 CCTTGCTCGA
** * *
22335762 ATCACCGGCATTAAGCCTGCTAGGCACGAAGACCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* * *
22335805 ATCACTGGCACGGAGCCTGCTAGGCACGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* **
22335848 ATCACCGACACGAAGCCTGCTAGGCATGAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
*
22335891 ATCACCGGCACGAAGCCTGCTAGGCATAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
*
22335934 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACTC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
22335977 ATCACCAGCACAAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
22336020 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
* *
22336063 ATCACCGGTACGAAGCCTGCAAGGCACAAAGGCCCGAATACAC
1 ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
22336106 ATCACCG
1 ATCACCG
22336113 AGTTTCATGC
Statistics
Matches: 288, Mismatches: 20, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
43 288 1.00
ACGTcount: A:0.32, C:0.34, G:0.23, T:0.11
Consensus pattern (43 bp):
ATCACCGGCACGAAGCCTGCTAGGCACAAAGGCCCGAATACAC
Found at i:22337753 original size:38 final size:38
Alignment explanation
Indices: 22337671--22337903 Score: 272
Period size: 38 Copynumber: 6.1 Consensus size: 38
22337661 AAACCCAAAC
* * * *
22337671 ATAACACCAGCACGAAGCCTACGGGACTTTAAACTCAGAT
1 ATAATACCAGCACGAAGCCTGCGGGA-TTT-AACCCGGAT
* * *
22337711 ATAATACCAGCACTAGGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
*
22337749 ATAATACTAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* *
22337787 ATATTACAAGCACGAAGCCTGCGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
* * *
22337825 ATAATTCCAACA-TATAGCCTGCGGG-TCTTAACCCGGAT
1 ATAATACCAGCACGA-AGCCTGCGGGAT-TTAACCCGGAT
* * *
22337863 ATATTACCAGCACAAAGCCTGTGGGATTTAACCCGGAT
1 ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
22337901 ATA
1 ATA
22337904 TTTATATTAT
Statistics
Matches: 166, Mismatches: 23, Indels: 10
0.83 0.12 0.05
Matches are distributed among these distances:
37 2 0.01
38 138 0.83
39 5 0.03
40 21 0.13
ACGTcount: A:0.32, C:0.24, G:0.21, T:0.22
Consensus pattern (38 bp):
ATAATACCAGCACGAAGCCTGCGGGATTTAACCCGGAT
Found at i:22337860 original size:114 final size:116
Alignment explanation
Indices: 22337679--22337905 Score: 309
Period size: 114 Copynumber: 2.0 Consensus size: 116
22337669 ACATAACACC
* * * *
22337679 AGCACGAAGCCTACGGGACTTTAAACTCAGATATAATACCAGCACTAGGCCTGTGGGATTTAACC
1 AGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAACACTAAGCCTGCGGGATTTAACC
* *
22337744 CGGATATAATACTAGCACGAAGCCTGCGGGATTTAACCCGGATATATTACA
66 CGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACA
* * *
22337795 AGCACGAAGCCTGCGGGA-TTT-AACCCGGATATAATTCCAACA-TATAGCCTGCGGG-TCTTAA
1 AGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAACACTA-AGCCTGCGGGAT-TTAA
* *
22337856 CCCGGATATATTACCAGCACAAAGCCTGTGGGATTTAACCCGGATATATT
64 CCCGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATT
22337906 TATATTATAT
Statistics
Matches: 98, Mismatches: 11, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
113 3 0.03
114 75 0.77
115 3 0.03
116 17 0.17
ACGTcount: A:0.31, C:0.24, G:0.22, T:0.23
Consensus pattern (116 bp):
AGCACGAAGCCTACGGGACTTTAAACCCAGATATAATACCAACACTAAGCCTGCGGGATTTAACC
CGGATATAATACCAGCACAAAGCCTGCGGGATTTAACCCGGATATATTACA
Found at i:22351071 original size:41 final size:40
Alignment explanation
Indices: 22351026--22351107 Score: 92
Period size: 40 Copynumber: 2.0 Consensus size: 40
22351016 GCTAGGTTTA
* * *
22351026 AAGCCCAAATCCAATCACCACCACAAAGCATGTGGGACTTT
1 AAGCCCAAATACAAT-ACCAACACAAAGCATGCGGGACTTT
** * *
22351067 AAGCCCGGATATAATACCAACACAAAGCCTGCGGGACTTT
1 AAGCCCAAATACAATACCAACACAAAGCATGCGGGACTTT
22351107 A
1 A
22351108 GCCTGGATAT
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
40 23 0.68
41 11 0.32
ACGTcount: A:0.37, C:0.29, G:0.17, T:0.17
Consensus pattern (40 bp):
AAGCCCAAATACAATACCAACACAAAGCATGCGGGACTTT
Found at i:22351155 original size:39 final size:39
Alignment explanation
Indices: 22351059--22351275 Score: 283
Period size: 39 Copynumber: 5.5 Consensus size: 39
22351049 CAAAGCATGT
* * * *
22351059 GGGACTTTAAGCCCGGATATAATACCAACAC-AAAGCCTGC
1 GGGAC-TT-AGCCCGGATATAACACCAGCACGAATGCCTTC
*
22351099 GGGACTTTAGCCTGGATATAACACCAGCACGAATGCCTTC
1 GGGAC-TTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
22351139 GGGGCTTAACCCGGATATAACACCAGCACGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
22351178 GAGACTTAGCCCGGATATAACACCAGCATGAATGCCTTC
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
22351217 GGGACTTAGCCCGGATATAACACCAGCATGAATGCCTTT
1 GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
* *
22351256 AGGACTTAGCTCGGATATAA
1 GGGACTTAGCCCGGATATAA
22351276 TTCTCCATTA
Statistics
Matches: 160, Mismatches: 16, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 141 0.88
40 19 0.12
ACGTcount: A:0.30, C:0.27, G:0.22, T:0.21
Consensus pattern (39 bp):
GGGACTTAGCCCGGATATAACACCAGCACGAATGCCTTC
Found at i:22358396 original size:40 final size:40
Alignment explanation
Indices: 22358317--22358437 Score: 167
Period size: 40 Copynumber: 3.0 Consensus size: 40
22358307 AACCCAAGTA
* **
22358317 CCTTCGGGAT-TTAG-CCGGATATAG-CAACTCGCATGAATG
1 CCTTCGGG-TCTTAGCCCGGATATAGTC-ACTAGCACAAATG
22358356 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
*
22358396 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
22358436 CC
1 CC
22358438 CCGGATATAG
Statistics
Matches: 75, Mismatches: 4, Indels: 5
0.89 0.05 0.06
Matches are distributed among these distances:
38 1 0.01
39 12 0.16
40 61 0.81
41 1 0.01
ACGTcount: A:0.26, C:0.27, G:0.23, T:0.24
Consensus pattern (40 bp):
CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:22358446 original size:27 final size:27
Alignment explanation
Indices: 22358410--22358464 Score: 110
Period size: 27 Copynumber: 2.0 Consensus size: 27
22358400 CGGGACTTAG
22358410 CCCGGATATAGTCACTAGCACAAATGC
1 CCCGGATATAGTCACTAGCACAAATGC
22358437 CCCGGATATAGTCACTAGCACAAATGC
1 CCCGGATATAGTCACTAGCACAAATGC
22358464 C
1 C
22358465 TTCGGATCTT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.33, C:0.31, G:0.18, T:0.18
Consensus pattern (27 bp):
CCCGGATATAGTCACTAGCACAAATGC
Found at i:22359403 original size:40 final size:40
Alignment explanation
Indices: 22359372--22359462 Score: 148
Period size: 40 Copynumber: 2.3 Consensus size: 40
22359362 GGACTAAGAT
* *
22359372 CCGAAGGCATTTGTGCGAGTTATT-AATTCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTT-TTAAAATCCGGGTTAAGTC
22359412 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
22359452 CCGAAGGCATT
1 CCGAAGGCATT
22359463 GTATGAGTTA
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
39 2 0.04
40 46 0.96
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTTTAAAATCCGGGTTAAGTC
Found at i:22365031 original size:50 final size:50
Alignment explanation
Indices: 22364972--22365071 Score: 200
Period size: 50 Copynumber: 2.0 Consensus size: 50
22364962 ATAGTTTTCA
22364972 ATCAAGTATTAAGATGGCACCTTACGAGGCTTTGTACGGTCGTAAATGCC
1 ATCAAGTATTAAGATGGCACCTTACGAGGCTTTGTACGGTCGTAAATGCC
22365022 ATCAAGTATTAAGATGGCACCTTACGAGGCTTTGTACGGTCGTAAATGCC
1 ATCAAGTATTAAGATGGCACCTTACGAGGCTTTGTACGGTCGTAAATGCC
22365072 GTACACCATT
Statistics
Matches: 50, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
50 50 1.00
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (50 bp):
ATCAAGTATTAAGATGGCACCTTACGAGGCTTTGTACGGTCGTAAATGCC
Found at i:22373597 original size:18 final size:18
Alignment explanation
Indices: 22373570--22373610 Score: 73
Period size: 18 Copynumber: 2.3 Consensus size: 18
22373560 TATCATATAC
*
22373570 ATAAATATTATTCATCAT
1 ATAAAGATTATTCATCAT
22373588 ATAAAGATTATTCATCAT
1 ATAAAGATTATTCATCAT
22373606 ATAAA
1 ATAAA
22373611 CCTTTTGACT
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
18 22 1.00
ACGTcount: A:0.49, C:0.10, G:0.02, T:0.39
Consensus pattern (18 bp):
ATAAAGATTATTCATCAT
Found at i:22379143 original size:20 final size:20
Alignment explanation
Indices: 22379118--22379155 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22379108 GCATGTAACG
*
22379118 TGCATCCTAGTGTACAAAAA
1 TGCATCCTAGAGTACAAAAA
*
22379138 TGCATCCTGGAGTACAAA
1 TGCATCCTAGAGTACAAA
22379156 GTGCATACTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.37, C:0.21, G:0.18, T:0.24
Consensus pattern (20 bp):
TGCATCCTAGAGTACAAAAA
Found at i:22380244 original size:14 final size:15
Alignment explanation
Indices: 22380227--22380259 Score: 50
Period size: 14 Copynumber: 2.3 Consensus size: 15
22380217 TATTTATAGT
22380227 TTAATTGAACTTAA-
1 TTAATTGAACTTAAC
*
22380241 TTAATTTAACTTAAC
1 TTAATTGAACTTAAC
22380256 TTAA
1 TTAA
22380260 ATTAATCTAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
14 13 0.76
15 4 0.24
ACGTcount: A:0.42, C:0.09, G:0.03, T:0.45
Consensus pattern (15 bp):
TTAATTGAACTTAAC
Found at i:22381079 original size:19 final size:19
Alignment explanation
Indices: 22381055--22381092 Score: 76
Period size: 19 Copynumber: 2.0 Consensus size: 19
22381045 AAGACAAGCC
22381055 CACCTTATATTATCTCAGT
1 CACCTTATATTATCTCAGT
22381074 CACCTTATATTATCTCAGT
1 CACCTTATATTATCTCAGT
22381093 TTCTCCCCGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.26, C:0.26, G:0.05, T:0.42
Consensus pattern (19 bp):
CACCTTATATTATCTCAGT
Found at i:22394350 original size:42 final size:43
Alignment explanation
Indices: 22394239--22394433 Score: 170
Period size: 42 Copynumber: 4.6 Consensus size: 43
22394229 TCCAATATGT
* *
22394239 GATTTCGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTGA
1 GATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
* *
22394282 GATTTACGTGTAATACCACGTTTGGGACGTTGGCATCGATTTAA
1 GA-TTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
* * * * * *
22394326 GA-TACGTGTAAGACCATGTCTGGGACATCGACATCG-TATAT
1 GATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
* * * *
22394367 GATTTCATGTAAGACC-CTATTTGGGACAG-TGGCATCGA-TT--
1 GATTACGTGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATTTAA
* *
22394407 GATTACATGTAAGACCACGTTTGGGAC
1 GATTACGTGTAAGACCACGTCTGGGAC
22394434 ATTGCTATGG
Statistics
Matches: 123, Mismatches: 23, Indels: 15
0.76 0.14 0.09
Matches are distributed among these distances:
40 23 0.19
41 6 0.05
42 53 0.43
43 2 0.02
44 39 0.32
ACGTcount: A:0.26, C:0.18, G:0.26, T:0.30
Consensus pattern (43 bp):
GATTACGTGTAAGACCACGTCTGGGACGTTGGCATCGATTTAA
Found at i:22398339 original size:28 final size:28
Alignment explanation
Indices: 22398307--22398361 Score: 110
Period size: 28 Copynumber: 2.0 Consensus size: 28
22398297 AACGAAGTGT
22398307 TAACACATGAAAAATGAATGTGTCTTAC
1 TAACACATGAAAAATGAATGTGTCTTAC
22398335 TAACACATGAAAAATGAATGTGTCTTA
1 TAACACATGAAAAATGAATGTGTCTTA
22398362 ACACCATTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 27 1.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.29
Consensus pattern (28 bp):
TAACACATGAAAAATGAATGTGTCTTAC
Found at i:22403093 original size:40 final size:40
Alignment explanation
Indices: 22403009--22403191 Score: 171
Period size: 40 Copynumber: 4.6 Consensus size: 40
22402999 TTAGTCGGAT
* * * *
22403009 TATAACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTG-C
1 TATATCCGGGCTAAG-TCCCGAAGGCATTTATGCGAG-CGAC
* * *
22403049 TATATCCGGGCTATGTCCCGAAGGCATTTATGCTAGCGAT
1 TATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGAC
* **
22403089 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGAC
*
22403129 TATAAT-CGGGCTAAGTCCCGAAGGCATTTGA-GCGAG-TAGC
1 TAT-ATCCGGGCTAAGTCCCGAAGGCATTT-ATGCGAGCGA-C
*
22403169 TATATCC-GGCTAAATCCCGAAGG
1 TATATCCGGGCTAAGTCCCGAAGG
22403192 TACTTGGTTT
Statistics
Matches: 122, Mismatches: 15, Indels: 13
0.81 0.10 0.09
Matches are distributed among these distances:
39 21 0.17
40 99 0.81
41 2 0.02
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (40 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTATGCGAGCGAC
Found at i:22403139 original size:80 final size:80
Alignment explanation
Indices: 22403006--22403157 Score: 236
Period size: 80 Copynumber: 1.9 Consensus size: 80
22402996 TGATTAGTCG
* *
22403006 GATTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAA
1 GATTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAA
22403071 GGCATTTATGCTAGC
66 GGCATTTATGCTAGC
* *
22403086 GATTATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTAAGTCCCG
1 GATTATAACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAT-ATCCGGGCTAAGTCCCG
22403149 AAGGCATTT
64 AAGGCATTT
22403158 GAGCGAGTAG
Statistics
Matches: 66, Mismatches: 4, Indels: 4
0.89 0.05 0.05
Matches are distributed among these distances:
79 1 0.02
80 63 0.95
81 2 0.03
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (80 bp):
GATTATAACCGGACTAAGATCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAA
GGCATTTATGCTAGC
Found at i:22403173 original size:80 final size:80
Alignment explanation
Indices: 22403009--22403191 Score: 223
Period size: 80 Copynumber: 2.3 Consensus size: 80
22402999 TTAGTCGGAT
* * * *
22403009 TATAACCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTGCTATATCCGGGCTATGTCCCGAAGG
1 TATATCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGG
* * *
22403073 CATTTATGCTAGCGAT
65 CATTTATGCGAGAGAC
22403089 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAAT-CGGGCTAAGTCCCGAAGG
1 TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAT-ATCCGGGCTAAGTCCCGAAGG
22403153 CATTTGA-GCGAGTAG-C
65 CATTT-ATGCGAG-AGAC
*
22403169 TATATCC-GGCTAAATCCCGAAGG
1 TATATCCGGGCTAAGTCCCGAAGG
22403192 TACTTGGTTT
Statistics
Matches: 91, Mismatches: 8, Indels: 9
0.84 0.07 0.08
Matches are distributed among these distances:
79 16 0.18
80 71 0.78
81 4 0.04
ACGTcount: A:0.26, C:0.22, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCCGGGCTAAGTCCCGAAGGC
ATTTATGCGAGAGAC
Found at i:22406272 original size:27 final size:27
Alignment explanation
Indices: 22406233--22406358 Score: 112
Period size: 27 Copynumber: 4.7 Consensus size: 27
22406223 AATATGAGAA
*
22406233 CCTGTAGGGTAGAATTATTGAAATAAC
1 CCTGTAGGGTAGAATTACTGAAATAAC
* * *
22406260 CCTGTTGGATAGAATTACCGAAAT-AC
1 CCTGTAGGGTAGAATTACTGAAATAAC
* * * *
22406286 CCTTATATGGTAGAAATACTGAAATACC
1 CC-TGTAGGGTAGAATTACTGAAATAAC
* *
22406314 CCTGTAGGGTAGAATTACCGAGAT-AC
1 CCTGTAGGGTAGAATTACTGAAATAAC
* *
22406340 CCTCGTGGGGTAAAATTAC
1 CCT-GTAGGGTAGAATTAC
22406359 CATTTTGCCC
Statistics
Matches: 77, Mismatches: 19, Indels: 6
0.75 0.19 0.06
Matches are distributed among these distances:
26 8 0.10
27 66 0.86
28 3 0.04
ACGTcount: A:0.34, C:0.17, G:0.21, T:0.27
Consensus pattern (27 bp):
CCTGTAGGGTAGAATTACTGAAATAAC
Found at i:22406309 original size:54 final size:54
Alignment explanation
Indices: 22406240--22406342 Score: 152
Period size: 54 Copynumber: 1.9 Consensus size: 54
22406230 GAACCTGTAG
* * *
22406240 GGTAGAATTATTGAAATAACCCTGTTGGATAGAATTACCGAAATACCCTTATAT
1 GGTAGAAATACTGAAATAACCCTGTAGGATAGAATTACCGAAATACCCTTATAT
* * *
22406294 GGTAGAAATACTGAAATACCCCTGTAGGGTAGAATTACCGAGATACCCT
1 GGTAGAAATACTGAAATAACCCTGTAGGATAGAATTACCGAAATACCCT
22406343 CGTGGGGTAA
Statistics
Matches: 43, Mismatches: 6, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 43 1.00
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (54 bp):
GGTAGAAATACTGAAATAACCCTGTAGGATAGAATTACCGAAATACCCTTATAT
Found at i:22406933 original size:27 final size:26
Alignment explanation
Indices: 22406902--22407037 Score: 137
Period size: 27 Copynumber: 5.0 Consensus size: 26
22406892 ATTCTGTTAA
* *
22406902 GTGGCTTTGCCACATTATCTGATTCTG
1 GTGGCTCTGCCACAATATCT-ATTCTG
* *
22406929 ATGGCTCTGTCACAATATTCTATTTCTG
1 GTGGCTCTGCCACAATA-TCTA-TTCTG
*
22406957 GTGGCTATGCCACAAATATCTATTCTG
1 GTGGCTCTGCCAC-AATATCTATTCTG
* *
22406984 GTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTCTGCCACAATATCTAT-TCTG
* * *
22407011 GTGACTCTGTCACAATATCTGTTCTG
1 GTGGCTCTGCCACAATATCTATTCTG
22407037 G
1 G
22407038 CAGCCATGCT
Statistics
Matches: 92, Mismatches: 13, Indels: 9
0.81 0.11 0.08
Matches are distributed among these distances:
26 13 0.14
27 53 0.58
28 22 0.24
29 4 0.04
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (26 bp):
GTGGCTCTGCCACAATATCTATTCTG
Found at i:22406968 original size:55 final size:54
Alignment explanation
Indices: 22406902--22407036 Score: 148
Period size: 55 Copynumber: 2.5 Consensus size: 54
22406892 ATTCTGTTAA
* * ** *
22406902 GTGGCTTTGCCACATTATCTGATTCTGATGGCTCTGTCACAATATTCTATTTCTG
1 GTGGCTATGCCACAATATCTGATTCTGATGGCTCTACCACAATA-TCTATATCTG
* *
22406957 GTGGCTATGCCACAAATATCT-ATTCTGGTGGCTCTACCACAATATCTGTATCTG
1 GTGGCTATGCCAC-AATATCTGATTCTGATGGCTCTACCACAATATCTATATCTG
* * *
22407011 GTGACTCTGTCACAATATCTG-TTCTG
1 GTGGCTATGCCACAATATCTGATTCTG
22407037 GCAGCCATGC
Statistics
Matches: 68, Mismatches: 10, Indels: 6
0.81 0.12 0.07
Matches are distributed among these distances:
53 12 0.18
54 18 0.26
55 32 0.47
56 6 0.09
ACGTcount: A:0.21, C:0.23, G:0.19, T:0.38
Consensus pattern (54 bp):
GTGGCTATGCCACAATATCTGATTCTGATGGCTCTACCACAATATCTATATCTG
Found at i:22407136 original size:44 final size:44
Alignment explanation
Indices: 22407082--22407169 Score: 140
Period size: 44 Copynumber: 2.0 Consensus size: 44
22407072 TGGGTTGGTC
*
22407082 GAGTTGTTTCCCCACATGGTGTAAGGTTGGTACGGGGGTGTATA
1 GAGTTCTTTCCCCACATGGTGTAAGGTTGGTACGGGGGTGTATA
** *
22407126 GAGTTCTTTCCGTACATGGTGTAAGGTTGGTACGGGGGTTTATA
1 GAGTTCTTTCCCCACATGGTGTAAGGTTGGTACGGGGGTGTATA
22407170 CGGCTGGATT
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
44 40 1.00
ACGTcount: A:0.18, C:0.12, G:0.35, T:0.34
Consensus pattern (44 bp):
GAGTTCTTTCCCCACATGGTGTAAGGTTGGTACGGGGGTGTATA
Found at i:22407216 original size:6 final size:6
Alignment explanation
Indices: 22407199--22407323 Score: 87
Period size: 6 Copynumber: 20.3 Consensus size: 6
22407189 TTGCATTCAC
* * * *
22407199 ATTCTA ATTCTG ATTCTG -TTACTTG ATACTG ATTCTG ATTCTG -TCACATA
1 ATTCTG ATTCTG ATTCTG ATT-C-TG ATTCTG ATTCTG ATTCTG AT-TC-TG
* *
22407249 ATTCTG ATTCTG ATTATG ATTCTG -TCACCTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG
* *
22407298 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
22407324 AATGTTTCTT
Statistics
Matches: 93, Mismatches: 15, Indels: 22
0.72 0.12 0.17
Matches are distributed among these distances:
5 5 0.05
6 76 0.82
7 9 0.10
8 3 0.03
ACGTcount: A:0.21, C:0.18, G:0.14, T:0.48
Consensus pattern (6 bp):
ATTCTG
Found at i:22407233 original size:25 final size:25
Alignment explanation
Indices: 22407205--22407263 Score: 82
Period size: 25 Copynumber: 2.4 Consensus size: 25
22407195 TCACATTCTA
* * *
22407205 ATTCTGATTCTGTTACTTGATACTG
1 ATTCTGATTCTGTCACATAATACTG
*
22407230 ATTCTGATTCTGTCACATAATTCTG
1 ATTCTGATTCTGTCACATAATACTG
22407255 ATTCTGATT
1 ATTCTGATT
22407264 ATGATTCTGT
Statistics
Matches: 30, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.22, C:0.17, G:0.14, T:0.47
Consensus pattern (25 bp):
ATTCTGATTCTGTCACATAATACTG
Found at i:22407262 original size:31 final size:31
Alignment explanation
Indices: 22407222--22407302 Score: 126
Period size: 31 Copynumber: 2.6 Consensus size: 31
22407212 TTCTGTTACT
*
22407222 TGATACTGATTCTGATTCTGTCACATAATTC
1 TGATTCTGATTCTGATTCTGTCACATAATTC
* * *
22407253 TGATTCTGATTATGATTCTGTCACCTGATTC
1 TGATTCTGATTCTGATTCTGTCACATAATTC
22407284 TGATTCTGATTCTGATTCT
1 TGATTCTGATTCTGATTCT
22407303 CATTTTGATT
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.21, C:0.19, G:0.15, T:0.46
Consensus pattern (31 bp):
TGATTCTGATTCTGATTCTGTCACATAATTC
Found at i:22421546 original size:20 final size:21
Alignment explanation
Indices: 22421521--22421559 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 21
22421511 TTCAAACTTG
*
22421521 TTTTATTTTTATTT-TTTTAC
1 TTTTATTTCTATTTATTTTAC
22421541 TTTTATTTCTATTTATTTT
1 TTTTATTTCTATTTATTTT
22421560 TGAAGACTCA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 13 0.76
21 4 0.24
ACGTcount: A:0.15, C:0.05, G:0.00, T:0.79
Consensus pattern (21 bp):
TTTTATTTCTATTTATTTTAC
Found at i:22427015 original size:47 final size:47
Alignment explanation
Indices: 22426941--22427033 Score: 150
Period size: 47 Copynumber: 2.0 Consensus size: 47
22426931 GGGTAAGAAG
* *
22426941 CCTTATTTAGTATAGGAAAATTTTTCCCAGTTCTGTTTATATATTTC
1 CCTTATTTAGCATAGGAAAATTCTTCCCAGTTCTGTTTATATATTTC
* *
22426988 CCTTATTTAGCATAGGAGAATTCTTCCCAGTTTTGTTTATATATTT
1 CCTTATTTAGCATAGGAAAATTCTTCCCAGTTCTGTTTATATATTT
22427034 TCTCAACTGC
Statistics
Matches: 42, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.25, C:0.15, G:0.12, T:0.48
Consensus pattern (47 bp):
CCTTATTTAGCATAGGAAAATTCTTCCCAGTTCTGTTTATATATTTC
Found at i:22431991 original size:38 final size:38
Alignment explanation
Indices: 22431940--22432017 Score: 147
Period size: 38 Copynumber: 2.1 Consensus size: 38
22431930 ACATACCGGT
22431940 TATAACATCAGGAGCATCACCCTCCCTACGACGTCGTG
1 TATAACATCAGGAGCATCACCCTCCCTACGACGTCGTG
*
22431978 TATAACATCAGGAGCATCACCCTCCCTACGACGTGGTG
1 TATAACATCAGGAGCATCACCCTCCCTACGACGTCGTG
22432016 TA
1 TA
22432018 GCATAAACCG
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
38 39 1.00
ACGTcount: A:0.27, C:0.32, G:0.19, T:0.22
Consensus pattern (38 bp):
TATAACATCAGGAGCATCACCCTCCCTACGACGTCGTG
Found at i:22434698 original size:24 final size:25
Alignment explanation
Indices: 22434671--22434722 Score: 79
Period size: 25 Copynumber: 2.1 Consensus size: 25
22434661 GACTAGCCTC
22434671 TTTTAAT-AACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
**
22434695 TTTTGGTAAACTGGGGCAAAGCCCT
1 TTTTAATAAACTGGGGCAAAGCCCT
22434720 TTT
1 TTT
22434723 CGCACTTCTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (25 bp):
TTTTAATAAACTGGGGCAAAGCCCT
Found at i:22434792 original size:21 final size:21
Alignment explanation
Indices: 22434768--22434830 Score: 74
Period size: 21 Copynumber: 3.0 Consensus size: 21
22434758 CATATAATAA
*
22434768 GTATATCTTAGCATATCATGT
1 GTATATCATAGCATATCATGT
*
22434789 GTATCTCATAGCATATCATGT
1 GTATATCATAGCATATCATGT
* *
22434810 GCATATTAT-GTCATATCATGT
1 GTATATCATAG-CATATCATGT
22434831 ATAACAATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
20 1 0.03
21 35 0.97
ACGTcount: A:0.29, C:0.16, G:0.14, T:0.41
Consensus pattern (21 bp):
GTATATCATAGCATATCATGT
Done.