Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 64 of 297
Found at i:22434824 original size:10 final size:11
Alignment explanation
Indices: 22434778--22434830 Score: 56
Period size: 11 Copynumber: 5.0 Consensus size: 11
22434768 GTATATCTTA
22434778 GCATATCATGT
1 GCATATCATGT
* * *
22434789 GTATCTCAT-A
1 GCATATCATGT
22434799 GCATATCATGT
1 GCATATCATGT
*
22434810 GCATATTATGT
1 GCATATCATGT
22434821 -CATATCATGT
1 GCATATCATGT
22434831 ATAACAATAT
Statistics
Matches: 33, Mismatches: 8, Indels: 3
0.75 0.18 0.07
Matches are distributed among these distances:
10 16 0.48
11 17 0.52
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (11 bp):
GCATATCATGT
Found at i:22436587 original size:28 final size:28
Alignment explanation
Indices: 22436521--22436648 Score: 157
Period size: 28 Copynumber: 4.5 Consensus size: 28
22436511 CATGAGATTG
* * **
22436521 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
* *
22436550 GCACTGAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
* *
22436578 GCACTAAGTGTGCGGGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22436607 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22436635 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22436649 GACTTACTAT
Statistics
Matches: 85, Mismatches: 13, Indels: 3
0.84 0.13 0.03
Matches are distributed among these distances:
28 43 0.51
29 42 0.49
ACGTcount: A:0.27, C:0.12, G:0.27, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22436610 original size:57 final size:57
Alignment explanation
Indices: 22436521--22436649 Score: 188
Period size: 57 Copynumber: 2.3 Consensus size: 57
22436511 CATGAGATTG
*
22436521 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTGAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
22436578 GCACTAAGTGTGCGGGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGGGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
22436635 ACACTAAGTGTGCGG
1 GCACTAAGTGTGCGG
22436650 ACTTACTATA
Statistics
Matches: 65, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 62 0.95
58 3 0.05
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:22445674 original size:21 final size:21
Alignment explanation
Indices: 22445633--22445690 Score: 64
Period size: 21 Copynumber: 2.8 Consensus size: 21
22445623 ATATTGTTAT
* *
22445633 ACATGATATGAC-ATAATATGC
1 ACATGATATG-CTATGAGATGC
* *
22445654 ATATGATATGTTATGAGATGC
1 ACATGATATGCTATGAGATGC
22445675 ACATGATATGCTATGA
1 ACATGATATGCTATGA
22445691 TATACTCATT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.38, C:0.10, G:0.19, T:0.33
Consensus pattern (21 bp):
ACATGATATGCTATGAGATGC
Found at i:22448035 original size:39 final size:38
Alignment explanation
Indices: 22447992--22448075 Score: 114
Period size: 39 Copynumber: 2.2 Consensus size: 38
22447982 TGAAAACAAG
22447992 TATTAATGATGTTCAAACTATGACATAATCAAAGACCCA
1 TATTAATGATGTTCAAACTATGACATAATCAAA-ACCCA
* * * * *
22448031 TATTAATGATGTTTAGATTATGACATAATTAAAACTCA
1 TATTAATGATGTTCAAACTATGACATAATCAAAACCCA
22448069 TATTAAT
1 TATTAAT
22448076 TGTAACACCC
Statistics
Matches: 40, Mismatches: 5, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
38 11 0.28
39 29 0.73
ACGTcount: A:0.43, C:0.12, G:0.10, T:0.36
Consensus pattern (38 bp):
TATTAATGATGTTCAAACTATGACATAATCAAAACCCA
Found at i:22449847 original size:37 final size:37
Alignment explanation
Indices: 22449788--22449889 Score: 177
Period size: 37 Copynumber: 2.8 Consensus size: 37
22449778 AGCTCAGACG
* *
22449788 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
22449825 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
22449862 TAATCTCCACACGTAGTCATCGGGTCTT
1 AAATCTCCACACGTAGTCATCGGGTCTT
22449890 TAGAGCTCGG
Statistics
Matches: 62, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
37 62 1.00
ACGTcount: A:0.26, C:0.30, G:0.19, T:0.25
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:22450077 original size:47 final size:47
Alignment explanation
Indices: 22450008--22450271 Score: 447
Period size: 47 Copynumber: 5.6 Consensus size: 47
22449998 CCCTTCGGGA
* *
22450008 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22450055 CTTATCACATATATACACTTTCACATTCATCACATCGGCTATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
22450102 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* * *
22450149 CTTATCACATATATATACATTTTCACATTCATCACATTGGCCATTCGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22450198 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
22450245 CTTATCACATATATACACTTTCACATT
1 CTTATCACATATATACACTTTCACATT
22450272 TATTCAAATA
Statistics
Matches: 204, Mismatches: 11, Indels: 4
0.93 0.05 0.02
Matches are distributed among these distances:
47 160 0.78
49 44 0.22
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:22450203 original size:143 final size:141
Alignment explanation
Indices: 22450008--22450271 Score: 465
Period size: 143 Copynumber: 1.9 Consensus size: 141
22449998 CCCTTCGGGA
22450008 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22450073 TTTCACATTCATCACATCGGCTATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
66 TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
22450138 GGCCATTTGGC
131 GGCCATTTGGC
* * * *
22450149 CTTATCACATATATATACATTTTCACATTCATCACATTGGCCATTCGGCCTTATCACATATATAC
1 CTTATCACAT-T-TATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATAC
22450214 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
64 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATT
22450272 TATTCAAATA
Statistics
Matches: 116, Mismatches: 5, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
141 10 0.09
142 1 0.01
143 105 0.91
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (141 bp):
CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACACTTTCACATTCATCACATC
GGCCATTTGGC
Found at i:22450221 original size:96 final size:94
Alignment explanation
Indices: 22450008--22450271 Score: 447
Period size: 96 Copynumber: 2.8 Consensus size: 94
22449998 CCCTTCGGGA
* *
22450008 CTTATCACATTTATACACTTTCACATCCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
*
22450073 TTTCACATTCATCACATCGGCTATTAGGC
66 TTTCACATTCATCACATCGGCCATTAGGC
*
22450102 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTTGGCCTTATCACATATATATAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC--ATATATAC
* * *
22450167 ATTTTCACATTCATCACATTGGCCATTCGGC
64 ACTTTCACATTCATCACATCGGCCATTAGGC
22450198 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
22450263 TTTCACATT
66 TTTCACATT
22450272 TATTCAAATA
Statistics
Matches: 159, Mismatches: 9, Indels: 4
0.92 0.05 0.02
Matches are distributed among these distances:
94 70 0.44
96 89 0.56
ACGTcount: A:0.29, C:0.29, G:0.08, T:0.34
Consensus pattern (94 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACAC
TTTCACATTCATCACATCGGCCATTAGGC
Found at i:22453524 original size:49 final size:49
Alignment explanation
Indices: 22453454--22453584 Score: 149
Period size: 49 Copynumber: 2.7 Consensus size: 49
22453444 ACATCAAAGT
* * *
22453454 CGATGCCATGTCTCAGGCAGGTCTTACACTGACTTTCATATATCAAG-GC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATC-AGTGC
* * * * * *
22453503 CGATGTCGTGTCCCAGACAGGTCTTGCACT-AGCTCTCATCTATCGGTGT
1 CGATGCCATGTCCCAGACAGGTCTTACACTGA-CTCTCATATATCAGTGC
22453552 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
1 CGATGCCATGTCCCAGACAGGTCTTACACTGAC
22453585 ACACAACAAG
Statistics
Matches: 67, Mismatches: 12, Indels: 6
0.79 0.14 0.07
Matches are distributed among these distances:
48 2 0.03
49 64 0.96
50 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.22, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGACAGGTCTTACACTGACTCTCATATATCAGTGC
Found at i:22477362 original size:40 final size:40
Alignment explanation
Indices: 22477330--22477561 Score: 365
Period size: 40 Copynumber: 5.8 Consensus size: 40
22477320 CCAGCATGAT
* * * * *
22477330 TGCTCTTTGAGACCTAGCCCGGATATAACACCAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* * *
22477370 TGCTCTCCGGGACTTAGTCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22477410 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
* *
22477450 TACTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
*
22477490 TGCTCTTCAGGACTTAGCCCGGATATATCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
22477530 TGCTCTTCGGGACTTAGCCCGGATATATCACT
1 TGCTCTTCGGGACTTAGCCCGGATATATCACT
22477562 CTCAATTCTC
Statistics
Matches: 175, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
40 175 1.00
ACGTcount: A:0.26, C:0.29, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCTCTTCGGGACTTAGCCCGGATATATCACTAGCACGAA
Found at i:22477475 original size:23 final size:23
Alignment explanation
Indices: 22477412--22477475 Score: 59
Period size: 23 Copynumber: 3.0 Consensus size: 23
22477402 AGCACGAATG
22477412 CTCTTCGGGACTTAGCCCGGATA
1 CTCTTCGGGACTTAGCCCGGATA
* * *
22477435 -T-ATC---AC-TAGCACGAATA
1 CTCTTCGGGACTTAGCCCGGATA
22477452 CTCTTCGGGACTTAGCCCGGATA
1 CTCTTCGGGACTTAGCCCGGATA
22477475 C
1 C
22477476 ATCACTAGCA
Statistics
Matches: 29, Mismatches: 6, Indels: 12
0.62 0.13 0.26
Matches are distributed among these distances:
17 9 0.31
18 3 0.10
19 2 0.07
21 2 0.07
22 3 0.10
23 10 0.34
ACGTcount: A:0.23, C:0.30, G:0.22, T:0.25
Consensus pattern (23 bp):
CTCTTCGGGACTTAGCCCGGATA
Found at i:22482287 original size:49 final size:49
Alignment explanation
Indices: 22482229--22482361 Score: 160
Period size: 49 Copynumber: 2.7 Consensus size: 49
22482219 GCACATCAAA
* * *
22482229 GTCGATGCCATGTCCCAGACTGGTCTTACACTGACTTTCATATATC-GAG
1 GTCGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCTG-G
* * * *
22482278 GTCGATGCCATGTCCTAGACAGGTCTTACATTGGCTCTCATCTATCTGT
1 GTCGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCTGG
* * *
22482327 GTCAATGCTAGGTCCTAGACAGGTCTTACACTGAC
1 GTCGATGCCATGTCCTAGACAGGTCTTACACTGAC
22482362 ACACAACAAG
Statistics
Matches: 71, Mismatches: 12, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
49 70 0.99
50 1 0.01
ACGTcount: A:0.22, C:0.26, G:0.21, T:0.31
Consensus pattern (49 bp):
GTCGATGCCATGTCCTAGACAGGTCTTACACTGACTCTCATATATCTGG
Found at i:22482451 original size:48 final size:47
Alignment explanation
Indices: 22482380--22482547 Score: 178
Period size: 48 Copynumber: 3.6 Consensus size: 47
22482370 AGCTGACACT
* *
22482380 ATGTCCCAAACAGGTCTTACACTAGCTTGTATATCTCGAGGTCGGTGC
1 ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGG-CGATGC
* * * * *
22482428 ATGTCCCAGACATGTCGTACACTAGC-TCTA-ATCTCAATGCCGATGC
1 ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGA-GGCGATGC
* * * *
22482474 ATATCCCAAACATGTCTTACACTGGCTTGCATCTCTCGAGGCTGATGC
1 ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGC-GATGC
* *
22482522 ATGTCCCAGACATGTCTTATACTAGC
1 ATGTCCCAAACATGTCTTACACTAGC
22482548 ACACATATCA
Statistics
Matches: 96, Mismatches: 20, Indels: 8
0.77 0.16 0.06
Matches are distributed among these distances:
46 33 0.34
47 8 0.08
48 55 0.57
ACGTcount: A:0.24, C:0.28, G:0.19, T:0.29
Consensus pattern (47 bp):
ATGTCCCAAACATGTCTTACACTAGCTTGTATATCTCGAGGCGATGC
Found at i:22486796 original size:55 final size:55
Alignment explanation
Indices: 22486735--22486843 Score: 209
Period size: 55 Copynumber: 2.0 Consensus size: 55
22486725 AGAAAATCAC
*
22486735 CATAAATTTATGGATTTGAATTAGAGGCTGAATGAGACATGAAATTAAATCTTAT
1 CATAAATTTATGGATTTGAATTAGAGGCTGAATGAGACATGAAATTAAAGCTTAT
22486790 CATAAATTTATGGATTTGAATTAGAGGCTGAATGAGACATGAAATTAAAGCTTA
1 CATAAATTTATGGATTTGAATTAGAGGCTGAATGAGACATGAAATTAAAGCTTA
22486844 ATGAGTCTAG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
55 53 1.00
ACGTcount: A:0.40, C:0.07, G:0.19, T:0.33
Consensus pattern (55 bp):
CATAAATTTATGGATTTGAATTAGAGGCTGAATGAGACATGAAATTAAAGCTTAT
Found at i:22487607 original size:47 final size:47
Alignment explanation
Indices: 22487540--22487895 Score: 640
Period size: 47 Copynumber: 7.6 Consensus size: 47
22487530 TATTTGAATA
22487540 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22487587 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22487634 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22487681 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22487728 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
22487775 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* * * * * *
22487822 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
* *
22487869 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22487896 TCCCGAAGGG
Statistics
Matches: 299, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 299 1.00
ACGTcount: A:0.32, C:0.08, G:0.30, T:0.29
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
Found at i:22488070 original size:37 final size:37
Alignment explanation
Indices: 22488014--22488092 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22488004 CCGAGCTCTA
* * *
22488014 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
22488051 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22488088 AAGAC
1 AAGAC
22488093 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22489069 original size:29 final size:29
Alignment explanation
Indices: 22489034--22489107 Score: 105
Period size: 29 Copynumber: 2.6 Consensus size: 29
22489024 GTTGTGAGAT
* *
22489034 TGGCACTAAGTGTGCGGGCTTGAAA-TGCA
1 TGGCACTAAGTGTGCGAG-TTGAAAGTACA
*
22489063 TGGCACTAAGTGTGCGAGTTTAAAGTACA
1 TGGCACTAAGTGTGCGAGTTGAAAGTACA
22489092 TGGCACTAAGTGTGCG
1 TGGCACTAAGTGTGCG
22489108 TGGTTGATTA
Statistics
Matches: 41, Mismatches: 3, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
28 5 0.12
29 36 0.88
ACGTcount: A:0.26, C:0.16, G:0.32, T:0.26
Consensus pattern (29 bp):
TGGCACTAAGTGTGCGAGTTGAAAGTACA
Found at i:22489511 original size:40 final size:40
Alignment explanation
Indices: 22489421--22489638 Score: 201
Period size: 40 Copynumber: 5.5 Consensus size: 40
22489411 TCGAATGATG
* * * *
22489421 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGC-GAGTGA-TAAA
* * * *
22489461 TCCAGACTAAGAT-CCGAAG-GCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGAGCATTCGTGCGAGTGA-TAAA
* **
22489501 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAA
* **
22489541 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAA
* * * **
22489581 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAA
22489621 TCCGGGCTAAGTCCCGAA
1 TCCGGGCTAAGTCCCGAA
22489639 TGCTAAGTCC
Statistics
Matches: 157, Mismatches: 17, Indels: 8
0.86 0.09 0.04
Matches are distributed among these distances:
39 1 0.01
40 136 0.87
41 20 0.13
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCGAGTGATAAA
Found at i:22489558 original size:80 final size:80
Alignment explanation
Indices: 22489421--22489638 Score: 264
Period size: 80 Copynumber: 2.7 Consensus size: 80
22489411 TCGAATGATG
* ** * *
22489421 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCAGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGC
* *
22489482 ATTGGTGCGAGTTACTAAA
63 ATTCGTGCGAGTGA-TAAA
22489501 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
* **
22489566 CGTGCTAGTGATGTA
66 CGTGCGAGTGATAAA
* *
22489581 TCTGGGCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAA
22489639 TGCTAAGTCC
Statistics
Matches: 122, Mismatches: 12, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
79 1 0.01
80 94 0.77
81 20 0.16
82 7 0.06
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCGAGTGATAAA
Found at i:22489634 original size:120 final size:120
Alignment explanation
Indices: 22489421--22490575 Score: 1944
Period size: 120 Copynumber: 9.5 Consensus size: 120
22489411 TCGAATGATG
* ** * *
22489421 TCCGGGCTAAGTCCCGAAG-GC-TTTGTGCTAAGTGACCATATCCAGACTAAGAT-CCGAAG-GC
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCT-AGTGA-TGTATCCGGGCTAAG-TCCCGAAGAGC
* * * **
22489482 ATTGGTGCGAGTTACTAAATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
63 ATTCGTGCTAGTGA-TGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
22489541 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCTGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
*
22489606 CATGCTAGTGATGTATCCGGGCTAAGTCCCGAATGCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
66 CGTGCTAGTGATGTAT-C---C---G----G---GCTAAGTCCCGAAGAGCATTCGTGCTAGTGA
22489671 TGTA
117 TGTA
22489675 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
22489740 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
22489795 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
22489860 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
22489915 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
22489980 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
22490035 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
22490100 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
22490155 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
22490220 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
22490275 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
22490340 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
*
22490395 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTTCCGAAGAGCATT
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
* * *
22490460 CGTGCTAGTGATATATCCGGGCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTA
66 CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
* *
22490515 TCC-GGCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC-GGCTAAGTCCCGAAGAGCA
1 TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCA
22490576 ATCATGCTGG
Statistics
Matches: 996, Mismatches: 21, Indels: 38
0.94 0.02 0.04
Matches are distributed among these distances:
118 18 0.02
119 38 0.04
120 792 0.80
121 20 0.02
122 7 0.01
123 1 0.00
124 1 0.00
127 2 0.00
130 1 0.00
131 1 0.00
133 1 0.00
134 114 0.11
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATT
CGTGCTAGTGATGTATCCGGGCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTA
Found at i:22489645 original size:14 final size:14
Alignment explanation
Indices: 22489626--22489652 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
22489616 ATGTATCCGG
22489626 GCTAAGTCCCGAAT
1 GCTAAGTCCCGAAT
22489640 GCTAAGTCCCGAA
1 GCTAAGTCCCGAA
22489653 GAGCATTCGT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.30, C:0.30, G:0.22, T:0.19
Consensus pattern (14 bp):
GCTAAGTCCCGAAT
Found at i:22489668 original size:54 final size:54
Alignment explanation
Indices: 22489586--22489692 Score: 205
Period size: 54 Copynumber: 2.0 Consensus size: 54
22489576 ATGTATCTGG
22489586 GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAT
1 GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAT
*
22489640 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGGGCTAAGTCCCGAA
1 GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAA
22489693 GAGCATTCGT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
54 52 1.00
ACGTcount: A:0.25, C:0.24, G:0.27, T:0.23
Consensus pattern (54 bp):
GCTAAGTCCCGAAGAGCATTCATGCTAGTGATGTATCCGGGCTAAGTCCCGAAT
Found at i:22489695 original size:40 final size:40
Alignment explanation
Indices: 22489640--22490575 Score: 1804
Period size: 40 Copynumber: 23.4 Consensus size: 40
22489630 AGTCCCGAAT
22489640 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489680 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489720 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489760 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489800 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489840 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489880 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489920 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22489960 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490000 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490040 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490080 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490120 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490160 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490200 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490240 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490280 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490320 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490360 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490400 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* *
22490440 GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCCGG
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* *
22490480 GCTAAGTCCCGAAGAGCATTCATGCTAGCGATGTATCC-G
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
* *
22490519 GCTAAGTTCCGAAGAGCATTCGTGCTAGTGATATATCC-G
1 GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
22490558 GCTAAGTCCCGAAGAGCA
1 GCTAAGTCCCGAAGAGCA
22490576 ATCATGCTGG
Statistics
Matches: 885, Mismatches: 11, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
39 53 0.06
40 832 0.94
ACGTcount: A:0.23, C:0.23, G:0.29, T:0.25
Consensus pattern (40 bp):
GCTAAGTCCCGAAGAGCATTCGTGCTAGTGATGTATCCGG
Found at i:22492655 original size:13 final size:13
Alignment explanation
Indices: 22492637--22492661 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22492627 CCGAAACTAG
22492637 AAAGAAAAAAAAC
1 AAAGAAAAAAAAC
22492650 AAAGAAAAAAAA
1 AAAGAAAAAAAA
22492662 TGCTCATCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.88, C:0.04, G:0.08, T:0.00
Consensus pattern (13 bp):
AAAGAAAAAAAAC
Found at i:22493823 original size:40 final size:39
Alignment explanation
Indices: 22493739--22493962 Score: 208
Period size: 40 Copynumber: 5.6 Consensus size: 39
22493729 TTGAATGCTG
*
22493739 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGA-T-ACAAAT
* *
22493778 ATCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACAAAT
1 -TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACAAAT
* * *
22493819 TCCGGGTTAAGCCCGAAGGAATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACAAAT
* *
22493858 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTATTAAA-
1 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATA-CAAAT
* **
22493897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGACTTACTATAA-
1 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATAC-A-AAT
*
22493938 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAG-CCCGAAGGCATTTG
22493963 AACGAGGAGC
Statistics
Matches: 158, Mismatches: 19, Indels: 14
0.83 0.10 0.07
Matches are distributed among these distances:
39 66 0.42
40 77 0.49
41 14 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGATACAAAT
Found at i:22493843 original size:39 final size:39
Alignment explanation
Indices: 22493792--22493927 Score: 202
Period size: 39 Copynumber: 3.5 Consensus size: 39
22493782 GGACTAAGAT
22493792 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
* * *
22493831 CCGAAGGAATTTGTGCGAGATACTAATTCCGGGCTAAGC
1 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
* *
22493870 CCGAAGGCATTTGTGCGAGTTATTAAA-TCCGGGTTAAGTC
1 CCGAAGGCATTTGTGCGAGATA-CAAATTCCGGGTTAAG-C
22493910 CCGAAGGCATTTGTGCGA
1 CCGAAGGCATTTGTGCGA
22493928 CTTACTATAA
Statistics
Matches: 87, Mismatches: 8, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 66 0.76
40 21 0.24
ACGTcount: A:0.26, C:0.20, G:0.29, T:0.25
Consensus pattern (39 bp):
CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGC
Found at i:22493927 original size:79 final size:80
Alignment explanation
Indices: 22493739--22493962 Score: 255
Period size: 79 Copynumber: 2.8 Consensus size: 80
22493729 TTGAATGCTG
* * * *
22493739 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAC-AATATCCGGACTAAGATCCGAAGGCAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAA-T-ACTAATATCCGGGCTAAGACCCGAAGGCAT
22493802 TTGTGCGAGATACAAAT
64 TTGTGCGAGATACAAAT
*
22493819 TCCGGGTTAAG-CCCGAAGGAATTTGTGCGAGATACTAAT-TCCGGGCTAAG-CCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATACTAATATCCGGGCTAAGACCCGAAGGCATT
* *
22493881 TGTGCGAGTTATTAAA-
65 TGTGCGAGATA-CAAAT
* * * *
22493897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGACTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATACTAATATCCGGGCTAAGACCCGAAGGCATT
22493961 TG
65 TG
22493963 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 12, Indels: 14
0.83 0.08 0.09
Matches are distributed among these distances:
78 34 0.27
79 54 0.43
80 36 0.29
81 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAATACTAATATCCGGGCTAAGACCCGAAGGCATTT
GTGCGAGATACAAAT
Found at i:22493984 original size:79 final size:79
Alignment explanation
Indices: 22493739--22493995 Score: 199
Period size: 79 Copynumber: 3.3 Consensus size: 79
22493729 TTGAATGCTG
* * * * *
22493739 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTA-AGTGAC-AATATCCGGACTAAGATCCGAAGGCA
1 TCCGGGTTAAGTCCCGAAGGAATTTGTGCGACA-T-ACTAATA-CCGGGCTAAG-CCCGAAGGCA
**
22493801 TTTGTGCGAGAT-AC-AAA
62 TTTGAACGAG-TGACTAAA
* *
22493818 TTCCGGGTTAAG-CCCGAAGGAATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTT
1 -TCCGGGTTAAGTCCCGAAGGAATTTGTGCGACATACTAATACCGGGCTAAGCCCGAAGGCATTT
** * *
22493882 GTGCGAGTTATTAAA
65 GAACGAGTGACTAAA
* * *
22493897 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGACTTACT-ATAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGAATTTGTGCGACATACTAAT-ACCGGGCTAAG-CCCGAAGGCATT
*
22493961 TGAACGAG-GAGCTATA
64 TGAACGAGTGA-CTAAA
* *
22493977 TCC-GGTTAAATTCCGAAGG
1 TCCGGGTTAAGTCCCGAAGG
22493996 TACGTGATTT
Statistics
Matches: 149, Mismatches: 19, Indels: 19
0.80 0.10 0.10
Matches are distributed among these distances:
77 1 0.01
78 33 0.22
79 68 0.46
80 46 0.31
81 1 0.01
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGAATTTGTGCGACATACTAATACCGGGCTAAGCCCGAAGGCATTTG
AACGAGTGACTAAA
Found at i:22501335 original size:111 final size:112
Alignment explanation
Indices: 22501171--22501392 Score: 437
Period size: 111 Copynumber: 2.0 Consensus size: 112
22501161 AATCCAAAAA
22501171 TCAAAATTTCATCATGGGTTACAAAAAAAATAACTTGATATCTCACTCAAGATCAACTAAAATTT
1 TCAAAATTTCATCATGGGTTACAAAAAAAATAACTTGATATCTCACTCAAGATCAACTAAAATTT
22501236 CAAGAGCTAATATGAACACCTTACCTTAATATTGACCTAAGATGACC
66 CAAGAGCTAATATGAACACCTTACCTTAATATTGACCTAAGATGACC
22501283 TCAAAATTTCATCATGGGTTACAAAAAAAA-AACTTGATATCTCACTCAAGATCAACTAAAATTT
1 TCAAAATTTCATCATGGGTTACAAAAAAAATAACTTGATATCTCACTCAAGATCAACTAAAATTT
22501347 CAAGAGCTAATATGAACACCTTACCTTAATATTGACCTAAGATGAC
66 CAAGAGCTAATATGAACACCTTACCTTAATATTGACCTAAGATGAC
22501393 TGATGGCTTC
Statistics
Matches: 110, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
111 80 0.73
112 30 0.27
ACGTcount: A:0.42, C:0.19, G:0.10, T:0.28
Consensus pattern (112 bp):
TCAAAATTTCATCATGGGTTACAAAAAAAATAACTTGATATCTCACTCAAGATCAACTAAAATTT
CAAGAGCTAATATGAACACCTTACCTTAATATTGACCTAAGATGACC
Found at i:22501389 original size:55 final size:55
Alignment explanation
Indices: 22501219--22501389 Score: 147
Period size: 55 Copynumber: 3.1 Consensus size: 55
22501209 TATCTCACTC
22501219 AAGATCAACTAAAATTTCAAGAGCTAATATGAACACCTTACCTTAATATTGACCT
1 AAGATCAACTAAAATTTCAAGAGCTAATATGAACACCTTACCTTAATATTGACCT
* * * * *** * * *
22501274 AAGATGACCTCAAAATTTCATCATGGGTTACA-A--AA-A-AAAAACTTGATATCTCA-CT
1 AAGATCAACT-AAAATTTCA--A-GAGCTA-ATATGAACACCTTACCTTAATAT-TGACCT
22501329 CAAGATCAACTAAAATTTCAAGAGCTAATATGAACACCTTACCTTAATATTGACCT
1 -AAGATCAACTAAAATTTCAAGAGCTAATATGAACACCTTACCTTAATATTGACCT
22501385 AAGAT
1 AAGAT
22501390 GACTGATGGC
Statistics
Matches: 83, Mismatches: 20, Indels: 26
0.64 0.16 0.20
Matches are distributed among these distances:
51 1 0.01
52 5 0.06
53 1 0.01
54 2 0.02
55 35 0.42
56 30 0.36
57 2 0.02
58 1 0.01
59 5 0.06
60 1 0.01
ACGTcount: A:0.43, C:0.19, G:0.10, T:0.28
Consensus pattern (55 bp):
AAGATCAACTAAAATTTCAAGAGCTAATATGAACACCTTACCTTAATATTGACCT
Found at i:22501679 original size:58 final size:58
Alignment explanation
Indices: 22501612--22501727 Score: 214
Period size: 58 Copynumber: 2.0 Consensus size: 58
22501602 ATATGGCACC
* *
22501612 TAGTTAATTAAAGTTAATATAAAATTCACAGTTGATTGTACAATTTGTAGCATGGCCG
1 TAGTTAATTAAAGTTAATATAAAATTCACACTTGATTATACAATTTGTAGCATGGCCG
22501670 TAGTTAATTAAAGTTAATATAAAATTCACACTTGATTATACAATTTGTAGCATGGCCG
1 TAGTTAATTAAAGTTAATATAAAATTCACACTTGATTATACAATTTGTAGCATGGCCG
22501728 GCCACTACCT
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
58 56 1.00
ACGTcount: A:0.37, C:0.11, G:0.16, T:0.36
Consensus pattern (58 bp):
TAGTTAATTAAAGTTAATATAAAATTCACACTTGATTATACAATTTGTAGCATGGCCG
Found at i:22506293 original size:37 final size:37
Alignment explanation
Indices: 22506234--22506342 Score: 182
Period size: 37 Copynumber: 2.9 Consensus size: 37
22506224 AGCTCAGACG
* * *
22506234 AAATCTCCACATGAAGTTATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
22506271 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
*
22506308 TAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA
22506343 ATATATTTCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
37 68 1.00
ACGTcount: A:0.27, C:0.30, G:0.19, T:0.24
Consensus pattern (37 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGACA
Found at i:22506615 original size:47 final size:47
Alignment explanation
Indices: 22506553--22506796 Score: 317
Period size: 47 Copynumber: 5.1 Consensus size: 47
22506543 ACATGTTTCG
* * *
22506553 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
*
22506600 CATTGGCCATTCGGCCTTATCTCATATATGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* * * * *
22506647 CATTGGCCATCCGGCCTTATCACACAAACGCATGTTCACACTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
* *
22506694 CATTGGCCATTCGGCCTTATCACGCATATATATATACAGGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCA--C----ATATATGCATGTTCACATTCATCA
* *
22506747 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCA
1 CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
22506794 CAT
1 CAT
22506797 AAAATCCTAA
Statistics
Matches: 170, Mismatches: 21, Indels: 12
0.84 0.10 0.06
Matches are distributed among these distances:
47 128 0.75
49 1 0.01
51 1 0.01
53 40 0.24
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (47 bp):
CATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCATCA
Found at i:22506764 original size:100 final size:94
Alignment explanation
Indices: 22506553--22506796 Score: 335
Period size: 100 Copynumber: 2.5 Consensus size: 94
22506543 ACATGTTTCG
* * * **
22506553 CATTAGCCATTCGGCCTTACCACATATATTCATGTTCACATTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
* *
22506618 ATCTCATATATGCATGTTCACATTCATCA
66 ATCTCATATATACAGGTTCACATTCATCA
* * *
22506647 CATTGGCCATCCGGCCTTATCACACAAACGCATGTTCACACTCATCACATTGGCCATTCGGCCTT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
*
22506712 ATCACGCATATATATATACAGGTTCACATTCATCA
66 AT----C-T-CATATATACAGGTTCACATTCATCA
22506747 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
1 CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACAT
22506797 AAAATCCTAA
Statistics
Matches: 130, Mismatches: 14, Indels: 6
0.87 0.09 0.04
Matches are distributed among these distances:
94 59 0.45
98 1 0.01
99 1 0.01
100 69 0.53
ACGTcount: A:0.27, C:0.30, G:0.12, T:0.31
Consensus pattern (94 bp):
CATTGGCCATTCGGCCTTATCACACATACGCATGTTCACATTCATCACATTGGCCATTCGGCCTT
ATCTCATATATACAGGTTCACATTCATCA
Found at i:22517255 original size:85 final size:85
Alignment explanation
Indices: 22517126--22517304 Score: 358
Period size: 85 Copynumber: 2.1 Consensus size: 85
22517116 TATTTTATTG
22517126 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
22517191 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
22517211 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
1 CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
22517276 TAGCCATAACATCTTGTCCA
66 TAGCCATAACATCTTGTCCA
22517296 CCCATGCTC
1 CCCATGCTC
22517305 ATGGCCGGCC
Statistics
Matches: 94, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
85 94 1.00
ACGTcount: A:0.26, C:0.26, G:0.08, T:0.39
Consensus pattern (85 bp):
CCCATGCTCTTTATTTTATTAATCCTTACATAATGCATTACCCCAACATGTTTATGACATGTTTT
TAGCCATAACATCTTGTCCA
Found at i:22526543 original size:21 final size:21
Alignment explanation
Indices: 22526517--22526558 Score: 84
Period size: 21 Copynumber: 2.0 Consensus size: 21
22526507 GGGTGTGTGA
22526517 CCCCTGTTTATAGAAAAAGTT
1 CCCCTGTTTATAGAAAAAGTT
22526538 CCCCTGTTTATAGAAAAAGTT
1 CCCCTGTTTATAGAAAAAGTT
22526559 TTCTAAGTTT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.33
Consensus pattern (21 bp):
CCCCTGTTTATAGAAAAAGTT
Found at i:22536381 original size:89 final size:90
Alignment explanation
Indices: 22536217--22536397 Score: 337
Period size: 89 Copynumber: 2.0 Consensus size: 90
22536207 CAGCCTAATG
* *
22536217 AAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTTTAATTTCATTTTAATAACTAAATGACCA
1 AAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTCTAAATTCATTTTAATAACTAAATGACCA
22536282 AAATGCCCTTCCTACTAAACTTTCA
66 AAATGCCCTTCCTACTAAACTTTCA
22536307 AAGAAGATGGACAAAAATTGGCTTTTAATTTTG-TTCTAAATTCATTTTAATAACTAAATGACCA
1 AAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTCTAAATTCATTTTAATAACTAAATGACCA
22536371 AAATGCCCTTCCTACTAAACTTTCA
66 AAATGCCCTTCCTACTAAACTTTCA
22536396 AA
1 AA
22536398 AAAATTCCAT
Statistics
Matches: 89, Mismatches: 2, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
89 56 0.63
90 33 0.37
ACGTcount: A:0.38, C:0.16, G:0.10, T:0.36
Consensus pattern (90 bp):
AAGAAGATGGACAAAAATTGGCTTTTAATTTTGTTTCTAAATTCATTTTAATAACTAAATGACCA
AAATGCCCTTCCTACTAAACTTTCA
Found at i:22546247 original size:30 final size:30
Alignment explanation
Indices: 22546213--22546272 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
22546203 CTTTAATACG
22546213 AACTTTGGAAAAATTACA-TTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTT-CCCCTA
* * *
22546243 AACTTTTGCATAATTACACTTTTTCCCCTA
1 AACTTTGGAAAAATTACACTTTTTCCCCTA
22546273 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 21 0.81
31 5 0.19
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.40
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTTCCCCTA
Found at i:22549353 original size:30 final size:30
Alignment explanation
Indices: 22549319--22549379 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
22549309 TCCTTAACTC
22549319 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
22549349 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
22549379 A
1 A
22549380 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:22576132 original size:271 final size:271
Alignment explanation
Indices: 22575649--22576189 Score: 1073
Period size: 271 Copynumber: 2.0 Consensus size: 271
22575639 TGATGCATTC
*
22575649 GGCCATGGTAGGAAGTAGATGAGAATTGGTAGTAAGGTGAAGTACAAATGTTAGTATTTGATTAC
1 GGCCATGGTAGGAAGTAAATGAGAATTGGTAGTAAGGTGAAGTACAAATGTTAGTATTTGATTAC
22575714 TAGTGTATATATGTGTATTAGCCGAGTTTTGAACTTGAAACAAAATGGTATGTAGTCAATACAAG
66 TAGTGTATATATGTGTATTAGCCGAGTTTTGAACTTGAAACAAAATGGTATGTAGTCAATACAAG
22575779 TAACCATATTTGTAGGAAGTATTGAGAATATAATCGGCCTCAACATAGACATGCATATTCGGCCA
131 TAACCATATTTGTAGGAAGTATTGAGAATATAATCGGCCTCAACATAGACATGCATATTCGGCCA
22575844 CATGAGGTAGATTGGTGTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGC
196 CATGAGGTAGATTGGTGTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGC
22575909 TTAGATAATCT
261 TTAGATAATCT
22575920 GGCCATGGTAGGAAGTAAATGAGAATTGGTAGTAAGGTGAAGTACAAATGTTAGTATTTGATTAC
1 GGCCATGGTAGGAAGTAAATGAGAATTGGTAGTAAGGTGAAGTACAAATGTTAGTATTTGATTAC
22575985 TAGTGTATATATGTGTATTAGCCGAGTTTTGAACTTGAAACAAAATGGTATGTAGTCAATACAAG
66 TAGTGTATATATGTGTATTAGCCGAGTTTTGAACTTGAAACAAAATGGTATGTAGTCAATACAAG
22576050 TAACCATATTTGTAGGAAGTATTGAGAATATAATCGGCCTCAACATAGACATGCATATTCGGCCA
131 TAACCATATTTGTAGGAAGTATTGAGAATATAATCGGCCTCAACATAGACATGCATATTCGGCCA
22576115 CATGAGGTAGATTGGTGTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGC
196 CATGAGGTAGATTGGTGTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGC
22576180 TTAGATAATC
261 TTAGATAATC
22576190 GGCTAAAAGA
Statistics
Matches: 269, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
271 269 1.00
ACGTcount: A:0.33, C:0.11, G:0.23, T:0.32
Consensus pattern (271 bp):
GGCCATGGTAGGAAGTAAATGAGAATTGGTAGTAAGGTGAAGTACAAATGTTAGTATTTGATTAC
TAGTGTATATATGTGTATTAGCCGAGTTTTGAACTTGAAACAAAATGGTATGTAGTCAATACAAG
TAACCATATTTGTAGGAAGTATTGAGAATATAATCGGCCTCAACATAGACATGCATATTCGGCCA
CATGAGGTAGATTGGTGTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGC
TTAGATAATCT
Found at i:22576481 original size:237 final size:237
Alignment explanation
Indices: 22576066--22576538 Score: 901
Period size: 237 Copynumber: 2.0 Consensus size: 237
22576056 TATTTGTAGG
* *
22576066 AAGTATTGAGAATATAATCGGCCTCAACATAGACATGCATATTCGGCCACATGAGGTAGATTGGT
1 AAGTATTAAGAATATAATCGGCCTCAACATAGACATGCATATTCAGCCACATGAGGTAGATTGGT
22576131 GTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGCTTAGATAATCGGCTAA
66 GTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGCTTAGATAATCGGCTAA
22576196 AAGAGAGTGTGGGCTAATATGTTGAGTTGATTCATGATTTCATATATATGTGACTCTAATGTCTA
131 AAGAGAGTGTGGGCTAATATGTTGAGTTGATTCATGATTTCATATATATGTGACTCTAATGTCTA
22576261 ATGTATATATGGGTTAAGTACCTTGAGTTTCTCTTTTTGATC
196 ATGTATATATGGGTTAAGTACCTTGAGTTTCTCTTTTTGATC
*
22576303 AAGTATTAAGCATATAATCGGCCTCAACATAGACATGCATATTCAGCCACATGAGGTAGATTGGT
1 AAGTATTAAGAATATAATCGGCCTCAACATAGACATGCATATTCAGCCACATGAGGTAGATTGGT
* *
22576368 GTTGCATGTATTCGGTTAGAGGCAAGCATATTGATGCTTTTATCTTGGCTTAGATAATCGGCTAA
66 GTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGCTTAGATAATCGGCTAA
22576433 AAGAGAGTGTGGGCTAATATGTTGAGTTGATTCATGATTTCATATATATGTGACTCTAATGTCTA
131 AAGAGAGTGTGGGCTAATATGTTGAGTTGATTCATGATTTCATATATATGTGACTCTAATGTCTA
22576498 ATGTATATATGGGTTAAGTACCTTGAGTTTCTCTTTTTGAT
196 ATGTATATATGGGTTAAGTACCTTGAGTTTCTCTTTTTGAT
22576539 GTTCAAATGA
Statistics
Matches: 231, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
237 231 1.00
ACGTcount: A:0.29, C:0.13, G:0.22, T:0.36
Consensus pattern (237 bp):
AAGTATTAAGAATATAATCGGCCTCAACATAGACATGCATATTCAGCCACATGAGGTAGATTGGT
GTTGCATGTATTCAGTTAGAGGCAAGCATATTGATACTTTTATCTTGGCTTAGATAATCGGCTAA
AAGAGAGTGTGGGCTAATATGTTGAGTTGATTCATGATTTCATATATATGTGACTCTAATGTCTA
ATGTATATATGGGTTAAGTACCTTGAGTTTCTCTTTTTGATC
Found at i:22577027 original size:40 final size:40
Alignment explanation
Indices: 22576972--22577267 Score: 379
Period size: 40 Copynumber: 7.4 Consensus size: 40
22576962 GATGATAACG
*
22576972 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
*
22577012 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
*
22577052 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-ATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATA-TCC
* * *
22577092 GAGCTAAGTCCCGAAGGCATTTGCGCTAGTTACTATATCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
*
22577132 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
* **
22577172 GGGCTAAGTCCCGAAGGCATTTGTGCGAACTACTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
* *
22577212 AGGCTAAGTCCCGAAGGCATTT-TAGCGAG-TAGCTATATCC
1 GGGCTAAGTCCCGAAGGCATTTGT-GCTAGTTA-CTATATCC
* *
22577252 -GGTTAAATCCCGAAGG
1 GGGCTAAGTCCCGAAGG
22577268 TACTTGGTTT
Statistics
Matches: 237, Mismatches: 16, Indels: 7
0.91 0.06 0.03
Matches are distributed among these distances:
39 17 0.07
40 219 0.92
41 1 0.00
ACGTcount: A:0.24, C:0.23, G:0.26, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTTACTATATCC
Found at i:22584974 original size:40 final size:40
Alignment explanation
Indices: 22584919--22585050 Score: 237
Period size: 40 Copynumber: 3.3 Consensus size: 40
22584909 GATGATAACG
22584919 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
22584959 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
* * *
22584999 GGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAATTCT
1 GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
22585039 GGGCTAAGTCCC
1 GGGCTAAGTCCC
22585051 TGTAGCACCC
Statistics
Matches: 89, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 89 1.00
ACGTcount: A:0.22, C:0.23, G:0.28, T:0.27
Consensus pattern (40 bp):
GGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACTAATTCC
Found at i:22586452 original size:40 final size:40
Alignment explanation
Indices: 22586408--22586629 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
22586398 GCTACTCATT
* * *
22586408 CAAATGTCTTCGGGACATAGCCC-GGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATT-TAGTAACTCGCA
*
22586448 CAAATGCCTTCGGGACTTATCCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* *
22586488 CAAATGCCTTCCGGACTTAACCCAGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * * * *
22586528 CCACTGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
* * * * * *
22586567 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCAGATTTAGTAAC-TCGCA
*
22586608 CAAA-GCCTTCGGGTCTTAGCCC
1 CAAATGCCTTCGGGACTTAGCCC
22586630 GGACATCATT
Statistics
Matches: 153, Mismatches: 24, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
38 2 0.01
39 30 0.20
40 108 0.71
41 13 0.08
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCAGATTTAGTAACTCGCA
Found at i:22586577 original size:79 final size:80
Alignment explanation
Indices: 22586436--22586629 Score: 223
Period size: 79 Copynumber: 2.4 Consensus size: 80
22586426 AGCCCGGTTA
* *
22586436 TAGTAACTCGCACAAATGCCTTCGGGACTTATCCCAGATTTAGTAACTCGCACAAATGCCTTCCG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTT-CG
22586501 GA-CTTAACCCAGATT
65 GATCTTAACCCAGATT
* * * *
22586516 TAGTAACTCGCACCACTGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGG
1 TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGG
** * *
22586580 ATCTTAGTCCGGATA
66 ATCTTAACCCAGATT
* * * *
22586595 TGGTCACTTAGCACAAA-GCCTTCGGGTCTTAGCCC
1 TAGTAAC-TCGCACAAATGCCTTCGGGACTTAGCCC
22586630 GGACATCATT
Statistics
Matches: 96, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
78 4 0.04
79 54 0.56
80 38 0.40
ACGTcount: A:0.25, C:0.29, G:0.20, T:0.26
Consensus pattern (80 bp):
TAGTAACTCGCACAAATGCCTTCGGGACTTAGCCCAGAATTAGTAACTCGCACAAATGCCTTCGG
ATCTTAACCCAGATT
Found at i:22593519 original size:40 final size:40
Alignment explanation
Indices: 22593475--22593660 Score: 200
Period size: 40 Copynumber: 4.7 Consensus size: 40
22593465 GCTCCTCGTT
* *
22593475 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
22593515 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
** *
22593555 CAAATGCCTTC-GGATCTTAGTTCGGATTTAGTAACTCGTA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAACTCGCA
* * * * *
22593595 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATTTAGTAAC-TCGCA
*
22593636 CAAA-GCCTTTGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
22593661 CATCATTCGA
Statistics
Matches: 127, Mismatches: 15, Indels: 8
0.85 0.10 0.05
Matches are distributed among these distances:
39 3 0.02
40 112 0.88
41 12 0.09
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:22595109 original size:40 final size:40
Alignment explanation
Indices: 22595058--22595227 Score: 211
Period size: 40 Copynumber: 4.3 Consensus size: 40
22595048 GGGCTGTCAC
22595058 AGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTA
1 AGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTA
* *
22595098 AGTCCCAAAGGCATTTGTG-TGAGTTAATATATCCGGGCTA
1 AGTCCCGAAGGCATTTGTGCT-AGTTACTATATCCGGGCTA
* * **
22595138 TGTCCCGAAGGCATTTGTGCGAACTACTATATCCGGGCTA
1 AGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTA
* * *
22595178 AGTCCCGAAGGCATTTGAGCAAG-TAGCTATATCC-GGTTA
1 AGTCCCGAAGGCATTTGTGCTAGTTA-CTATATCCGGGCTA
*
22595217 AATCCCGAAGG
1 AGTCCCGAAGG
22595228 TACTTGGTTT
Statistics
Matches: 113, Mismatches: 14, Indels: 7
0.84 0.10 0.05
Matches are distributed among these distances:
39 17 0.15
40 96 0.85
ACGTcount: A:0.26, C:0.22, G:0.25, T:0.27
Consensus pattern (40 bp):
AGTCCCGAAGGCATTTGTGCTAGTTACTATATCCGGGCTA
Found at i:22597820 original size:29 final size:29
Alignment explanation
Indices: 22597774--22597834 Score: 104
Period size: 29 Copynumber: 2.1 Consensus size: 29
22597764 TACCGGTGAT
22597774 CACATCGAGCACTAAAGCTTCCTCTCGAG
1 CACATCGAGCACTAAAGCTTCCTCTCGAG
* *
22597803 CACATCGAGCGCTGAAGCTTCCTCTCGAG
1 CACATCGAGCACTAAAGCTTCCTCTCGAG
22597832 CAC
1 CAC
22597835 GGATCACGTA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.25, C:0.36, G:0.20, T:0.20
Consensus pattern (29 bp):
CACATCGAGCACTAAAGCTTCCTCTCGAG
Found at i:22600891 original size:28 final size:27
Alignment explanation
Indices: 22600834--22600915 Score: 85
Period size: 28 Copynumber: 2.9 Consensus size: 27
22600824 ATACAGTCTA
*
22600834 GGCCTAAGCCCATATCAGTAACAGA-CTG
1 GGCCTAAGCCCATA-CAGTAACA-ATATG
22600862 GGCCTAAGCCCATTACAGTAACAATATG
1 GGCCTAAGCCCA-TACAGTAACAATATG
* * *
22600890 GGCATTAGCCCAATGCAGTAACAATA
1 GGCCTAAGCCC-ATACAGTAACAATA
22600916 CAGTACAATA
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
27 1 0.02
28 43 0.91
29 3 0.06
ACGTcount: A:0.35, C:0.26, G:0.20, T:0.20
Consensus pattern (27 bp):
GGCCTAAGCCCATACAGTAACAATATG
Found at i:22601280 original size:27 final size:27
Alignment explanation
Indices: 22601227--22601280 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
22601217 AAGAATAGTC
* *
22601227 AAATCAGTCATTTACCCTCGAGGGGTA
1 AAATCAGTCATTTACCCTAGAGAGGTA
*
22601254 AAAT-AGTCATTTTACCCTATAGAGGTA
1 AAATCAGTCA-TTTACCCTAGAGAGGTA
22601281 TTTTGGTTAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 5 0.22
27 18 0.78
ACGTcount: A:0.33, C:0.19, G:0.19, T:0.30
Consensus pattern (27 bp):
AAATCAGTCATTTACCCTAGAGAGGTA
Found at i:22603920 original size:27 final size:27
Alignment explanation
Indices: 22603881--22603991 Score: 127
Period size: 27 Copynumber: 4.1 Consensus size: 27
22603871 GGAAGCGTCA
*
22603881 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCACAATTATCTGATC
*
22603908 TGGTGGCTCTGCCACATATT-TCTGTTC
1 TGGTGGCTCTGCCACA-ATTATCTGATC
* *
22603935 TGGTGGCTTTGCCACGATTATCTGTATC
1 TGGTGGCTCTGCCACAATTATCTG-ATC
* * *
22603963 TGGTGACTCTGTCAC-ATTATCTGTTC
1 TGGTGGCTCTGCCACAATTATCTGATC
22603989 TGG
1 TGG
22603992 CAGCCATGCT
Statistics
Matches: 72, Mismatches: 9, Indels: 7
0.82 0.10 0.08
Matches are distributed among these distances:
26 8 0.11
27 47 0.65
28 17 0.24
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (27 bp):
TGGTGGCTCTGCCACAATTATCTGATC
Found at i:22603986 original size:54 final size:54
Alignment explanation
Indices: 22603881--22603991 Score: 161
Period size: 54 Copynumber: 2.1 Consensus size: 54
22603871 GGAAGCGTCA
* *
22603881 TGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTGCCACATATTTCTGTTC
1 TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
* * *
22603935 TGGTGGCTTTGCCACGATTATCTGTATCTGGTGACTCTGTCACAT-TATCTGTTC
1 TGGTGGCTATGCCACAATTATCTG-ATCTGGTGACTCTGCCACATATATCTGTTC
22603989 TGG
1 TGG
22603992 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 5, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
54 33 0.65
55 18 0.35
ACGTcount: A:0.15, C:0.23, G:0.23, T:0.39
Consensus pattern (54 bp):
TGGTGGCTATGCCACAATTATCTGATCTGGTGACTCTGCCACATATATCTGTTC
Found at i:22611735 original size:39 final size:39
Alignment explanation
Indices: 22611681--22611794 Score: 165
Period size: 39 Copynumber: 2.9 Consensus size: 39
22611671 CAGTGATGTT
22611681 TATCCAGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
* *
22611720 TATCCAGACTTAGGGTCCGTAGGCTATGTGCTGGAATTA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
* * * * *
22611759 TATCCGGACTTAAGGTCCACAGGCTACGTTCTGGAA
1 TATCCAGACTTAGGGTCCGCAGGCTATGTACTGGAA
22611795 ATATGTCCGG
Statistics
Matches: 67, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (39 bp):
TATCCAGACTTAGGGTCCGCAGGCTATGTACTGGAATTA
Found at i:22636168 original size:21 final size:21
Alignment explanation
Indices: 22636144--22636191 Score: 69
Period size: 21 Copynumber: 2.3 Consensus size: 21
22636134 GGGCACAAAT
22636144 CCGTGTGGAAGGGTAACACGC
1 CCGTGTGGAAGGGTAACACGC
* **
22636165 CCGTGTTGAAGGGTAACATTC
1 CCGTGTGGAAGGGTAACACGC
22636186 CCGTGT
1 CCGTGT
22636192 CCCACACCCG
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.21, C:0.23, G:0.33, T:0.23
Consensus pattern (21 bp):
CCGTGTGGAAGGGTAACACGC
Found at i:22637232 original size:24 final size:24
Alignment explanation
Indices: 22637187--22637233 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
22637177 AGTATGGTAT
*
22637187 TGGAAATATATACATGGGATAATA
1 TGGAAATATATACATAGGATAATA
* *
22637211 TGGAAATATGTACATAGTATAAT
1 TGGAAATATATACATAGGATAAT
22637234 GTTAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (24 bp):
TGGAAATATATACATAGGATAATA
Found at i:22639859 original size:55 final size:55
Alignment explanation
Indices: 22639773--22639948 Score: 237
Period size: 59 Copynumber: 3.1 Consensus size: 55
22639763 TAAAAGCAGA
* *
22639773 TTTTGAAAAACA-GAAATTAAAGGGGTCAACTCACCTCTCGCAATATGAGTTGAT
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGAT
* *
22639827 TTTTGAAAAACATGAATTTAAAAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTT
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGA----T
* * * *
22639886 TTTTGAAAAACATAAATTGAAAGGGCTCAACTAACCTCTTGCAATATGAGTTGAT
1 TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGAT
22639941 TTTTGAAA
1 TTTTGAAA
22639949 GGTAGAAATT
Statistics
Matches: 107, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
54 12 0.11
55 46 0.43
59 49 0.46
ACGTcount: A:0.36, C:0.15, G:0.16, T:0.33
Consensus pattern (55 bp):
TTTTGAAAAACATGAATTTAAAGGGCTCAACTCACCTCTCGCAATATGAGTTGAT
Found at i:22640120 original size:13 final size:13
Alignment explanation
Indices: 22640102--22640131 Score: 51
Period size: 13 Copynumber: 2.3 Consensus size: 13
22640092 TAATTTTTGA
22640102 AAAACAGAAACTG
1 AAAACAGAAACTG
*
22640115 AAAACAGAAATTG
1 AAAACAGAAACTG
22640128 AAAA
1 AAAA
22640132 TACCTCAACG
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.67, C:0.10, G:0.13, T:0.10
Consensus pattern (13 bp):
AAAACAGAAACTG
Found at i:22640222 original size:142 final size:140
Alignment explanation
Indices: 22640042--22640327 Score: 412
Period size: 142 Copynumber: 2.0 Consensus size: 140
22640032 GATAAGTAGA
* *
22640042 TTTTGAAAAACAGAAATTAAAAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
1 TTTTAAAAAACAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
* *
22640107 AGAAACTGAAAACAGAAATTGAAAATACCTCAACGTGTGAGCC-AAAGCTCAACTCACCTCTCGC
66 AGAAACTAAAAACAGAAATTGAAAATACCTCAACGTGT---CCTAAAGCTCAACTCACCTCTCAC
22640171 AATATGAGTTGAT
128 AATATGAGTTGAT
* *
22640184 TTTTAAAAAACAGAAATTAAAAAGCTCAACTCACCTCTCGCAGTATGAGTTCATTTTTGAAAAAC
1 TTTTAAAAAACAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
* * * ** * * *
22640249 ATAAATTAAAAACAGAAATTGAAGATGTCTCAGCGTGTCCTGAAGCTCAACTCACTTCTCACAAT
66 AGAAACTAAAAACAGAAATTGAAAATACCTCAACGTGTCCTAAAGCTCAACTCACCTCTCACAAT
22640314 ATGAGTTGAT
131 ATGAGTTGAT
22640324 TTTT
1 TTTT
22640328 GAAATCATGA
Statistics
Matches: 129, Mismatches: 14, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
139 2 0.02
140 35 0.27
142 92 0.71
ACGTcount: A:0.40, C:0.19, G:0.14, T:0.28
Consensus pattern (140 bp):
TTTTAAAAAACAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTGAAAAAC
AGAAACTAAAAACAGAAATTGAAAATACCTCAACGTGTCCTAAAGCTCAACTCACCTCTCACAAT
ATGAGTTGAT
Found at i:22640232 original size:54 final size:54
Alignment explanation
Indices: 22640150--22640260 Score: 186
Period size: 54 Copynumber: 2.1 Consensus size: 54
22640140 CGTGTGAGCC
*
22640150 AAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAAAACAGAAATTAA
1 AAAGCTCAACTCACCTCTCGCAATATGAGTTCATTTTTAAAAAACAGAAATTAA
* * *
22640204 AAAGCTCAACTCACCTCTCGCAGTATGAGTTCATTTTTGAAAAACATAAATTAA
1 AAAGCTCAACTCACCTCTCGCAATATGAGTTCATTTTTAAAAAACAGAAATTAA
22640258 AAA
1 AAA
22640261 CAGAAATTGA
Statistics
Matches: 53, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
54 53 1.00
ACGTcount: A:0.42, C:0.19, G:0.11, T:0.28
Consensus pattern (54 bp):
AAAGCTCAACTCACCTCTCGCAATATGAGTTCATTTTTAAAAAACAGAAATTAA
Found at i:22640493 original size:79 final size:79
Alignment explanation
Indices: 22640361--22640510 Score: 264
Period size: 79 Copynumber: 1.9 Consensus size: 79
22640351 TTGGAAGAAT
* *
22640361 AGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCATAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
22640426 TGAAAAGCAAAAAC
66 TGAAAAGCAAAAAC
* *
22640440 AGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
22640505 TGAAAA
66 TGAAAA
22640511 CATGAATTAA
Statistics
Matches: 67, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
79 67 1.00
ACGTcount: A:0.35, C:0.21, G:0.17, T:0.28
Consensus pattern (79 bp):
AGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTT
TGAAAAGCAAAAAC
Found at i:22640517 original size:178 final size:178
Alignment explanation
Indices: 22640256--22640715 Score: 726
Period size: 178 Copynumber: 2.6 Consensus size: 178
22640246 AACATAAATT
* * *
22640256 AAAAACAGAAATTGAAGATGT--CTCAGCGTGTCCTGAAGCTCAACTCACTTCTCACAATATGAG
1 AAAAACAGAAATTGAA-AT-TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
* * * *
22640319 TTGATTTTTGAAATCATGAATTAAAATAGAAATTGGAAGAATAGAAATTGAAAATACCTCAGCGT
64 TTGATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGT
*
22640384 GTCCTGAGGCTCAACTCACCTCTCATAATATGAGTTGATTTTTGAAAAGC
129 GTCCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGC
*
22640434 AAAAACAGAAATTGAAATTACCTCAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
*
22640499 GATTTTTGAAAACATGAATTAAAACATAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGT
66 GATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGT
*
22640564 CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAGC
131 CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGC
* *
22640612 AGAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTT
1 AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
22640677 GATTTTTGAAAAGTATAAATTAAAAACAGAAATTAAAAG
66 GATTTTTGAAAA-CATGAATT-AAAACAGAAATTGAAAG
22640716 GCTCAACTCA
Statistics
Matches: 260, Mismatches: 18, Indels: 6
0.92 0.06 0.02
Matches are distributed among these distances:
176 1 0.00
177 2 0.01
178 236 0.91
179 6 0.02
180 15 0.06
ACGTcount: A:0.38, C:0.18, G:0.17, T:0.27
Consensus pattern (178 bp):
AAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTTTGAAAACATGAATTAAAACAGAAATTGAAAGAACAGAAATTGAAAATACCTCAGCGTGT
CCTGAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAGC
Found at i:22640669 original size:79 final size:79
Alignment explanation
Indices: 22640536--22640689 Score: 290
Period size: 79 Copynumber: 1.9 Consensus size: 79
22640526 AAATTGAAAG
22640536 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
22640601 TTTTGAAAAGCAGA
66 TTTTGAAAAGCAGA
* *
22640615 AACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTTGCAATATGAGTTGAT
1 AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
22640680 TTTTGAAAAG
66 TTTTGAAAAG
22640690 TATAAATTAA
Statistics
Matches: 73, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.33, C:0.21, G:0.19, T:0.27
Consensus pattern (79 bp):
AACAGAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAT
TTTTGAAAAGCAGA
Found at i:22652750 original size:24 final size:24
Alignment explanation
Indices: 22652705--22652751 Score: 67
Period size: 24 Copynumber: 2.0 Consensus size: 24
22652695 TAAATGGTAT
*
22652705 TGGAAATATATACATGGGATAATA
1 TGGAAATATATACATAGGATAATA
* *
22652729 TGGAAATATGTACATAGTATAAT
1 TGGAAATATATACATAGGATAAT
22652752 GTTAAAAATA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 20 1.00
ACGTcount: A:0.45, C:0.04, G:0.19, T:0.32
Consensus pattern (24 bp):
TGGAAATATATACATAGGATAATA
Found at i:22665037 original size:40 final size:40
Alignment explanation
Indices: 22664978--22665245 Score: 473
Period size: 40 Copynumber: 6.7 Consensus size: 40
22664968 GAGCATTGGA
*
22664978 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
22665018 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
*
22665058 ATATATCCGGGCTAGGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
22665098 ATATATCCGGGCTATGACCCGAAGGCAATTATGCGAGATG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
22665138 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
22665178 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
1 ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
* *
22665218 ATATGTTCGGGCTAAGACCCGAAGGCAA
1 ATATATCCGGGCTAAGACCCGAAGGCAA
22665246 ATGTGTTTGC
Statistics
Matches: 221, Mismatches: 7, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
40 221 1.00
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.22
Consensus pattern (40 bp):
ATATATCCGGGCTAAGACCCGAAGGCAATTATGCGAGTTG
Found at i:22675861 original size:39 final size:39
Alignment explanation
Indices: 22675697--22675879 Score: 170
Period size: 40 Copynumber: 4.6 Consensus size: 39
22675687 TTGAATGCTG
* * * * * * *
22675697 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGAATATA
1 TCCGGGTTATGTCCCGAAGGCATTGTGC-GAGTTACTAAA
* * * *
22675737 TCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTATG-TCCCGAAGG-CATTGTGCGAGTTACTAAA
* **
22675777 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTATGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
22675817 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
1 TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
* *
22675856 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTATGTCCCGAAGGCATT
22675880 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 18, Indels: 9
0.82 0.12 0.06
Matches are distributed among these distances:
39 38 0.31
40 74 0.61
41 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.27
Consensus pattern (39 bp):
TCCGGGTTATGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:22675899 original size:79 final size:80
Alignment explanation
Indices: 22675733--22675914 Score: 190
Period size: 79 Copynumber: 2.3 Consensus size: 80
22675723 GCTAAGTGAA
* * * *
22675733 TATATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGG
1 TATATCCGGGTTAAG-TCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGG
** ** *
22675797 CATTCGTGCGAGTTGT
65 CATTCGAACGAGGAGC
* * * * *
22675813 TAAATCCGGGTTATGTCCCGAAGG-CATTGTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGC
1 TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
*
22675877 ATTTGAACGAGGAGC
66 ATTCGAACGAGGAGC
*
22675892 TATATCC-GGTTAAATCCCGAAGG
1 TATATCCGGGTTAAGTCCCGAAGG
22675915 TACGTGATTT
Statistics
Matches: 83, Mismatches: 18, Indels: 4
0.79 0.17 0.04
Matches are distributed among these distances:
78 14 0.17
79 50 0.60
80 19 0.23
ACGTcount: A:0.26, C:0.20, G:0.27, T:0.26
Consensus pattern (80 bp):
TATATCCGGGTTAAGTCCCGAAGGCCATTGTGCGAGATACTAAAACCGGGCTAAGTCCCGAAGGC
ATTCGAACGAGGAGC
Found at i:22679281 original size:30 final size:30
Alignment explanation
Indices: 22679245--22679304 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
22679235 TTCCCGAGCC
*
22679245 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
22679275 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
22679305 CGTATTAAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:22694337 original size:25 final size:25
Alignment explanation
Indices: 22694309--22694387 Score: 65
Period size: 25 Copynumber: 3.3 Consensus size: 25
22694299 CTAATGGCCG
22694309 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
* *** ****
22694334 ATGTGAT-AAGGCCTAA-TG-GCCG
1 ATGTGATGAATGTGAAAGTGTATAT
22694356 ATGTGATGAATGTGAAAGTGTATAT
1 ATGTGATGAATGTGAAAGTGTATAT
22694381 ATGTGAT
1 ATGTGAT
22694388 AAGAAATACG
Statistics
Matches: 35, Mismatches: 16, Indels: 6
0.61 0.28 0.11
Matches are distributed among these distances:
22 7 0.20
23 7 0.20
24 7 0.20
25 14 0.40
ACGTcount: A:0.33, C:0.05, G:0.29, T:0.33
Consensus pattern (25 bp):
ATGTGATGAATGTGAAAGTGTATAT
Found at i:22694359 original size:47 final size:47
Alignment explanation
Indices: 22694293--22694390 Score: 196
Period size: 47 Copynumber: 2.1 Consensus size: 47
22694283 GAAATGATAG
22694293 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22694340 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
1 TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
22694387 TAAG
1 TAAG
22694391 AAATACGTAT
Statistics
Matches: 51, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 51 1.00
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
TAAGGCCTAATGGCCGATGTGATGAATGTGAAAGTGTATATATGTGA
Found at i:22694528 original size:40 final size:41
Alignment explanation
Indices: 22694449--22694590 Score: 150
Period size: 40 Copynumber: 3.5 Consensus size: 41
22694439 ATGATGTCTA
* * * * *
22694449 GGCTAAGTCCTGAAGGC-TTTGTGCTAAGTGACCAT-ATCCG
1 GGCTATGTCCCGAAGGCATTTGTGC-GAGTTACTATAATCCG
* *
22694489 GACTATGAT-CCGAAGGCATTTGTGTGAGTTACTA-AATCCG
1 GGCTATG-TCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
* *
22694529 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
22694569 GGCTATGTCCCGAAGGCATTTG
1 GGCTATGTCCCGAAGGCATTTG
22694591 AACGAGTAGC
Statistics
Matches: 84, Mismatches: 13, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
39 1 0.01
40 74 0.88
41 9 0.11
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.28
Consensus pattern (41 bp):
GGCTATGTCCCGAAGGCATTTGTGCGAGTTACTATAATCCG
Found at i:22694608 original size:80 final size:79
Alignment explanation
Indices: 22694452--22694623 Score: 179
Period size: 80 Copynumber: 2.2 Consensus size: 79
22694442 ATGTCTAGGC
* * ***
22694452 TAAGTCCTGAAGGCTTTGTGCTAAGTGACCATATCCGGACTATGATCCGAAGGCATTTGTGTGAG
1 TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTATGATCCGAAGGCATTTGAACGAG
22694517 TTACTAAATCCGGGT
66 TTACTAAATCC-GGT
* * * *
22694532 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAACCGGGCTATG-TCCCGAAGGCATTTGAACG
1 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAACCGGACTATGAT-CCGAAGGCATTTGAACG
*
22694595 AG-TAGCTATATCCGGT
64 AGTTA-CTAAATCCGGT
* *
22694611 TAAATTCCGAAGG
1 TAAGTCCCGAAGG
22694624 TATGTGATTT
Statistics
Matches: 77, Mismatches: 12, Indels: 7
0.80 0.12 0.07
Matches are distributed among these distances:
79 17 0.22
80 53 0.69
81 7 0.09
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (79 bp):
TAAGTCCCGAAGGCTTTGTGCTAAGTGACCATAACCGGACTATGATCCGAAGGCATTTGAACGAG
TTACTAAATCCGGT
Found at i:22694884 original size:47 final size:47
Alignment explanation
Indices: 22694815--22695078 Score: 393
Period size: 47 Copynumber: 5.6 Consensus size: 47
22694805 AAGGGTTGGT
*
22694815 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCTGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
*
22694862 AATGTGAAAGTGTATATATGTGACAAGGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
*
22694909 AATGTGAAAGTGTATATATATGTGATAACGTCTAATGGCCGATGTGATG
1 AATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCCGATGTGATG
*
22694958 AATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
* * * * * * *
22695005 AATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCAACGTGATG
1 AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
* *
22695052 GATGTGAAAGTGTATAAATGTGATAAG
1 AATGTGAAAGTGTATATATGTGATAAG
22695079 TCCCGAAGGG
Statistics
Matches: 199, Mismatches: 16, Indels: 4
0.91 0.07 0.02
Matches are distributed among these distances:
47 154 0.77
49 45 0.23
ACGTcount: A:0.33, C:0.08, G:0.30, T:0.30
Consensus pattern (47 bp):
AATGTGAAAGTGTATATATGTGATAAGGTCTAATGGCCGATGTGATG
Found at i:22694977 original size:96 final size:96
Alignment explanation
Indices: 22694815--22695023 Score: 368
Period size: 96 Copynumber: 2.2 Consensus size: 96
22694805 AAGGGTTGGT
* *
22694815 AATGTGAAAGTG--TATATATGTGATAAGGTCTAATGGCTGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAACGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
22694878 TATGTGACAAGGTCTAATGGCCGATGTGATG
66 TATGTGACAAGGCCTAATGGCCGATGTGATG
22694909 AATGTGAAAGTGTATATATATGTGATAACGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
1 AATGTGAAAGTGTATATATATGTGATAACGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
*
22694974 TATGTGATAAGGCCTAATGGCCGATGTGATG
66 TATGTGACAAGGCCTAATGGCCGATGTGATG
22695005 AATGTGAAAGTGTATATAT
1 AATGTGAAAGTGTATATAT
22695024 GTGACAGGGC
Statistics
Matches: 109, Mismatches: 4, Indels: 2
0.95 0.03 0.02
Matches are distributed among these distances:
94 12 0.11
96 97 0.89
ACGTcount: A:0.33, C:0.07, G:0.28, T:0.32
Consensus pattern (96 bp):
AATGTGAAAGTGTATATATATGTGATAACGTCTAATGGCCGATGTGATGAATGTGAAAGTGTATA
TATGTGACAAGGCCTAATGGCCGATGTGATG
Found at i:22695253 original size:37 final size:37
Alignment explanation
Indices: 22695197--22695275 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
22695187 CCGAGCTCTA
* * *
22695197 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
22695234 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
22695271 AAGAC
1 AAGAC
22695276 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:22701842 original size:42 final size:42
Alignment explanation
Indices: 22701731--22701844 Score: 138
Period size: 43 Copynumber: 2.7 Consensus size: 42
22701721 TTCCGTACCA
* *
22701731 ATGCCATATCCCAGATATGGTCTAACATGAAATCTCATATCG
1 ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* * * * *
22701773 ATGCCAAGAGCCCAGCTATGGTCTTACACGAAGTCTCGTATCG
1 ATGCC-ATATCCCAGATATGGTCTTACACGAAATCTCATATCG
* *
22701816 ATGCCATATCCCATATATGGTTTTACACG
1 ATGCCATATCCCAGATATGGTCTTACACG
22701845 TAATACCAAT
Statistics
Matches: 59, Mismatches: 12, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
42 24 0.41
43 35 0.59
ACGTcount: A:0.29, C:0.25, G:0.18, T:0.28
Consensus pattern (42 bp):
ATGCCATATCCCAGATATGGTCTTACACGAAATCTCATATCG
Found at i:22718037 original size:55 final size:53
Alignment explanation
Indices: 22717911--22718100 Score: 146
Period size: 55 Copynumber: 3.5 Consensus size: 53
22717901 AGGGTTTAAG
* * * * * * ** * *
22717911 GATACCAAGTAAGACCATGCCAAGGCATGGCATTGGTAAGTTTTAGAAGGCAAG
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAA-CTACATAAGGCAAA
* * * *
22717965 GAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACGCTAAGGCAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGAT-AACTAC-ATAAGGCAAA
* * * * * * * *
22718020 GATCCCATGTAAGACCATGCCAAGGCATGGCAATGGTGAGTTCATAAGGTAAA
1 GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
*
22718073 GATACCACGTAAGACCATGTCAAGACAT
1 GATACCATGTAAGACCATGTCAAGACAT
22718101 CCCGTGTATC
Statistics
Matches: 106, Mismatches: 28, Indels: 5
0.76 0.20 0.04
Matches are distributed among these distances:
53 32 0.30
54 35 0.33
55 39 0.37
ACGTcount: A:0.37, C:0.19, G:0.24, T:0.20
Consensus pattern (53 bp):
GATACCATGTAAGACCATGTCAAGACATGGCAATGATAACTACATAAGGCAAA
Found at i:22727464 original size:27 final size:27
Alignment explanation
Indices: 22727434--22727611 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22727424 ATATTGAGTC
* * * *
22727434 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22727461 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22727488 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22727516 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22727543 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22727570 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22727597 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22727612 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22727573 original size:82 final size:81
Alignment explanation
Indices: 22727455--22727610 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22727445 TGCTATATAA
* *
22727455 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22727520 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22727537 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22727601 CACTTAGTGC
65 CACTTAGTGC
22727611 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22735941 original size:27 final size:27
Alignment explanation
Indices: 22735911--22736088 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
22735901 ATATTGAGTC
* * * *
22735911 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
22735938 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22735965 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
22735993 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
22736020 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
22736047 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
22736074 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
22736089 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:22736050 original size:82 final size:81
Alignment explanation
Indices: 22735932--22736087 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
22735922 TGCTATATAA
* *
22735932 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
22735997 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
22736014 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
22736078 CACTTAGTGC
65 CACTTAGTGC
22736088 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:22746721 original size:132 final size:132
Alignment explanation
Indices: 22746483--22746746 Score: 411
Period size: 132 Copynumber: 2.0 Consensus size: 132
22746473 ATGTTAAGAG
22746483 ATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGAATTTGGAAAT
1 ATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGAATTTGGAAAT
* * ** * * *
22746548 TCATTATAATTTAACCAGAGATAATTAGAAGTCATGGCATATATGCATAGATTCCTTTTTGAGTC
66 TCATTACAAATTAACCAGAGATAATTAGAAGTCATACCATATATGCAAAGATTCCTCTCTGAGTC
22746613 TA
131 TA
*
22746615 ATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGACTTTGGAAAT
1 ATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGAATTTGGAAAT
* ** * *
22746680 TCATTACAAATTAACCAGAGATGATTAGGGGTCGTACCATATATGTAAAGATTCCTCTCTGAGTC
66 TCATTACAAATTAACCAGAGATAATTAGAAGTCATACCATATATGCAAAGATTCCTCTCTGAGTC
22746745 TA
131 TA
22746747 GTTTTCATAG
Statistics
Matches: 119, Mismatches: 13, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
132 119 1.00
ACGTcount: A:0.28, C:0.18, G:0.21, T:0.33
Consensus pattern (132 bp):
ATATTCAGGTTCTCGTGAGACAGGGCCAGAACGGTTTCTGGATTCCCTGTTCCGAATTTGGAAAT
TCATTACAAATTAACCAGAGATAATTAGAAGTCATACCATATATGCAAAGATTCCTCTCTGAGTC
TA
Found at i:22746859 original size:54 final size:54
Alignment explanation
Indices: 22746801--22746907 Score: 160
Period size: 54 Copynumber: 2.0 Consensus size: 54
22746791 GGAGATATCA
* *
22746801 AAGTCGTAATGAACAAAGGTCAGTGTAGTCGACCCCTGCAACTTGGGAGACTTC
1 AAGTCGTAATGAACAAAGGTCAGTGTAGTCGACCCCTGCAACATGAGAGACTTC
** * *
22746855 AAGTCGTAATGTGCAAAGGTCAGTGTAGTCGATCCCTGTAACATGAGAGACTT
1 AAGTCGTAATGAACAAAGGTCAGTGTAGTCGACCCCTGCAACATGAGAGACTT
22746908 TGACTAATAA
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.30, C:0.20, G:0.26, T:0.24
Consensus pattern (54 bp):
AAGTCGTAATGAACAAAGGTCAGTGTAGTCGACCCCTGCAACATGAGAGACTTC
Found at i:22749146 original size:40 final size:40
Alignment explanation
Indices: 22749062--22749245 Score: 205
Period size: 40 Copynumber: 4.6 Consensus size: 40
22749052 TTGAATGCTG
* * * *
22749062 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACT-AT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGTTATTAAT
**
22749101 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTATTAAT
1 -TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGTTATTAAT
* * *
22749142 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAGATACTAAT
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
* *
22749182 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTT-TTAAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATT-AAT
22749222 TCCGGGTTAAGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
22749246 GTATGAGTTA
Statistics
Matches: 125, Mismatches: 14, Indels: 10
0.84 0.09 0.07
Matches are distributed among these distances:
39 2 0.02
40 113 0.90
41 10 0.08
ACGTcount: A:0.24, C:0.21, G:0.27, T:0.28
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTATTAAT
Found at i:22749199 original size:80 final size:81
Alignment explanation
Indices: 22749062--22749242 Score: 230
Period size: 80 Copynumber: 2.3 Consensus size: 81
22749052 TTGAATGCTG
* *
22749062 TCCGGGCTAAGTCCCGAAGG-CTTTGTGCTAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
* *
22749126 TGTGCGAGTTATT-AAT
66 CGTGCGAGTT-TTAAAA
**
22749142 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCG-AGAT-ACTA-ATTCCGGGTTAAG-TCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAG-TGACTATA-TCCGGACTAAGAT-CCGAAGGC
22749203 ATTCGTGCGAGTTTTAAAA
63 ATTCGTGCGAGTTTTAAAA
22749222 TCCGGGTTAAGTCCCGAAGGC
1 TCCGGGTTAAGTCCCGAAGGC
22749243 ATTGTATGAG
Statistics
Matches: 90, Mismatches: 6, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
79 4 0.04
80 77 0.86
81 9 0.10
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (81 bp):
TCCGGGTTAAGTCCCGAAGGCCTTTGTGCGAAGTGACTATATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGTTTTAAAA
Found at i:22756744 original size:40 final size:39
Alignment explanation
Indices: 22756713--22756922 Score: 242
Period size: 40 Copynumber: 5.3 Consensus size: 39
22756703 GGACTAAGAT
* *
22756713 CCGAAGGCATTTGTGCGAGATACAAATTCCGGGTTAAGCC
1 CCGAAGGCATTCGTGCGAGATACAAA-TCCGGGTTAAGTC
* *
22756753 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
* *
22756793 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * *
22756833 CCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGATA-CAAATCCGGGTTAAGTC
* * * * *
22756873 CCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGATAC-AAATCCGGGTTAAGTC
22756912 CCGAAGGCATT
1 CCGAAGGCATT
22756923 TGAACGAGGA
Statistics
Matches: 156, Mismatches: 11, Indels: 7
0.90 0.06 0.04
Matches are distributed among these distances:
39 34 0.22
40 119 0.76
41 3 0.02
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (39 bp):
CCGAAGGCATTCGTGCGAGATACAAATCCGGGTTAAGTC
Found at i:22756876 original size:120 final size:120
Alignment explanation
Indices: 22756660--22756922 Score: 309
Period size: 120 Copynumber: 2.2 Consensus size: 120
22756650 TTGAATGCTG
* *
22756660 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
* *
22756724 TGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGATACTAAA
66 CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGG-CATTGTGCGAGATACTAAA
* * * * **
22756780 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTATTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGAT-CCGAAGGCAT
* * * * * *
22756843 TCGTGCGAGTTATTAAA-TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
65 TCGTGCGAGATA-CAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
* *
22756899 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
22756923 TGAACGAGGA
Statistics
Matches: 121, Mismatches: 19, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
119 38 0.31
120 74 0.61
121 9 0.07
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (120 bp):
TCCGGGCTAAGTCCCGAAGGCATTCGTGCTAAGTGAATAAATCCGGACTAAGATCCGAAGGCATT
CGTGCGAGATACAAATTCCGGGTTAAGCCCCGAAGGCATTGTGCGAGATACTAAA
Found at i:22756942 original size:79 final size:80
Alignment explanation
Indices: 22756661--22756957 Score: 230
Period size: 80 Copynumber: 3.7 Consensus size: 80
22756651 TGAATGCTGT
* ** * * * **
22756661 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATATCCGGACTAAGAT-CCGAAGGCATT
1 CCGGGCTAAGTCCCGAAGGCATTCGAAC-GAGTGACTAAATCCGGGTTAAG-TCCCGAAGGCATT
* * *
22756724 TGTGCGAGATAC-AAATT
64 CGTGCGAGTTACTAAA-A
* * * * **
22756741 CCGGGTTAAGCCCCGAAGGCCTTTGTGCGAGAT-ACTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAG-TGACTAAATCCGGGTTAAGTCCCGAAGGCATTC
* *
22756805 GTGCGAGTTATTAAAT
65 GTGCGAGTTACTAAAA
* ** * * *
22756821 CCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTATGTCCCGAAGGCATT-G
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
*
22756885 TGTGAGTTACTAAAA
66 TGCGAGTTACTAAAA
* * * *
22756900 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCC-GGTTAAATCCCGAAGG
1 CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGA-CTAAATCCGGGTTAAGTCCCGAAGG
22756958 TACGTGATTT
Statistics
Matches: 183, Mismatches: 28, Indels: 14
0.81 0.12 0.06
Matches are distributed among these distances:
78 15 0.08
79 47 0.26
80 110 0.60
81 11 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (80 bp):
CCGGGCTAAGTCCCGAAGGCATTCGAACGAGTGACTAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGTTACTAAAA
Found at i:22759290 original size:57 final size:57
Alignment explanation
Indices: 22759202--22759315 Score: 219
Period size: 57 Copynumber: 2.0 Consensus size: 57
22759192 CTCTAACCAG
22759202 AACTCGGCCCTTTCAGCATCATCATTTATTGTTGCTCGAAACTCTTCGGCCCCATAA
1 AACTCGGCCCTTTCAGCATCATCATTTATTGTTGCTCGAAACTCTTCGGCCCCATAA
*
22759259 AACTCGGCCCTTTCAGCATCATCATTTATTGTTGCTCGAAACTCTTCGGGCCCATAA
1 AACTCGGCCCTTTCAGCATCATCATTTATTGTTGCTCGAAACTCTTCGGCCCCATAA
22759316 TTTTTAATCT
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
57 56 1.00
ACGTcount: A:0.23, C:0.31, G:0.15, T:0.32
Consensus pattern (57 bp):
AACTCGGCCCTTTCAGCATCATCATTTATTGTTGCTCGAAACTCTTCGGCCCCATAA
Found at i:22766846 original size:46 final size:47
Alignment explanation
Indices: 22766793--22767054 Score: 222
Period size: 46 Copynumber: 5.6 Consensus size: 47
22766783 TGTAACCCGC
* * *
22766793 CCATAAGTGAACTCGGACACAACTCAACGAGCTCGA-GCGTTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGATGCGTTCGCAT
* * *
22766839 CCATAAGTGAACTCAAACTCAACTCAACAAGTTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GATG-C--GTTCGCAT
* * *
22766889 -C-TCA-TGAACTCAGACTCAACTCAACGAGTTCG-GGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGATGCGTTCGCAT
* *
22766932 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTC-GATG-C--GTTCGCAT
* * * *
22766982 -C-TCA-CGAACTCAGACTCAACTCAACGAGTTC-AGGCATTCGCAT
1 CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGATGCGTTCGCAT
* *
22767025 CCATAAGTGAACTCGGACTCAAGTCAACGA
1 CCATAAGTGAACTCAGACTCAACTCAACGA
22767055 CTTTAGATGC
Statistics
Matches: 171, Mismatches: 27, Indels: 36
0.73 0.12 0.15
Matches are distributed among these distances:
42 4 0.02
43 6 0.04
44 4 0.02
45 7 0.04
46 76 0.44
47 53 0.31
48 6 0.04
49 4 0.02
50 6 0.04
51 5 0.03
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.21
Consensus pattern (47 bp):
CCATAAGTGAACTCAGACTCAACTCAACGAGTTCGATGCGTTCGCAT
Found at i:22766906 original size:47 final size:47
Alignment explanation
Indices: 22766846--22767012 Score: 200
Period size: 47 Copynumber: 3.6 Consensus size: 47
22766836 CATCCATAAG
* *
22766846 TGAACTCAAACTCAACTCAACAAGTTCGGATGCCTAGTTACATCTCA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
* *
22766893 TGAACTCAGACTCAACTCAACGAGTTCGG--G-C-A-TTCGCATCCATAA
1 TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT-C-TCA
* *
22766938 GTGAACTCGGACTCAACTCAACGAGTTCAGATGCCTAGTTACATCTCA
1 -TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
*
22766986 CGAACTCAGACTCAACTCAACGAGTTC
1 TGAACTCAGACTCAACTCAACGAGTTC
22767013 AGGCATTCGC
Statistics
Matches: 101, Mismatches: 10, Indels: 18
0.78 0.08 0.14
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 3 0.03
46 27 0.27
47 52 0.51
48 3 0.03
49 2 0.02
50 4 0.04
51 2 0.02
ACGTcount: A:0.32, C:0.29, G:0.16, T:0.23
Consensus pattern (47 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGATGCCTAGTTACATCTCA
Found at i:22766929 original size:93 final size:93
Alignment explanation
Indices: 22766800--22767052 Score: 398
Period size: 93 Copynumber: 2.7 Consensus size: 93
22766790 CGCCCATAAG
* * * * * **
22766800 TGAACTCGGACACAACTCAACGAGCTCGAGCGTTCGCATCCATAAGTGAACTCAAACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
22766865 ACAAGTTCGGATGCCTAGTTACATCTCA
66 ACAAGTTCAGATGCCTAGTTACATCTCA
22766893 TGAACTCAGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
1 TGAACTCAGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
*
22766958 ACGAGTTCAGATGCCTAGTTACATCTCA
66 ACAAGTTCAGATGCCTAGTTACATCTCA
* * *
22766986 CGAACTCAGACTCAACTCAACGAGTTCAGGCATTCGCATCCATAAGTGAACTCGGACTCAAGTCA
1 TGAACTCAGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
22767051 AC
66 AC
22767053 GACTTTAGAT
Statistics
Matches: 148, Mismatches: 12, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
93 148 1.00
ACGTcount: A:0.32, C:0.29, G:0.18, T:0.22
Consensus pattern (93 bp):
TGAACTCAGACTCAACTCAACGAGTTCGGGCATTCGCATCCATAAGTGAACTCGGACTCAACTCA
ACAAGTTCAGATGCCTAGTTACATCTCA
Found at i:22769917 original size:58 final size:58
Alignment explanation
Indices: 22769822--22769934 Score: 190
Period size: 58 Copynumber: 1.9 Consensus size: 58
22769812 GGTAGAAATA
* *
22769822 TTAAGGAATTGTAATGTTAAACATTGTCCTCAAAGGTTGATCAAATTAGTGAATTATC
1 TTAAAGAATTGTAAGGTTAAACATTGTCCTCAAAGGTTGATCAAATTAGTGAATTATC
* *
22769880 TTAAAGAATTGTAAGGTTAAACCTTGTCCTCAAAGGTTGATCAATTTAGTGAATT
1 TTAAAGAATTGTAAGGTTAAACATTGTCCTCAAAGGTTGATCAAATTAGTGAATT
22769935 TGAGAAAAAT
Statistics
Matches: 51, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
58 51 1.00
ACGTcount: A:0.35, C:0.11, G:0.18, T:0.36
Consensus pattern (58 bp):
TTAAAGAATTGTAAGGTTAAACATTGTCCTCAAAGGTTGATCAAATTAGTGAATTATC
Found at i:22774116 original size:96 final size:96
Alignment explanation
Indices: 22774012--22774195 Score: 251
Period size: 96 Copynumber: 1.9 Consensus size: 96
22774002 ATAACGGTGC
* * *
22774012 CGATGCCATGTCCTAGACATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATTCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCACATATCGATGCCAATGCCATATCCCAGA
* * *
22774077 TATGGTTTTACATGGGATCTCATACTGATGT
66 TATGATCTTACAAGGGATCTCATACTGATGT
* * * * * * *
22774108 CGATGCCATGTCCCAGACGTGGTCTTATATGGGATCACTTATCGATGTCGATGCCATATCCCATA
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCACATATCGATGCCAATGCCATATCCCAGA
22774173 TATGATCTTACAAGGGATCTCAT
66 TATGATCTTACAAGGGATCTCAT
22774196 CTCAATTTTG
Statistics
Matches: 75, Mismatches: 13, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
96 75 1.00
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.31
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGGGACCACATATCGATGCCAATGCCATATCCCAGA
TATGATCTTACAAGGGATCTCATACTGATGT
Found at i:22774170 original size:48 final size:48
Alignment explanation
Indices: 22773997--22774242 Score: 197
Period size: 48 Copynumber: 5.1 Consensus size: 48
22773987 CTTTCACGAA
* * * * * *
22773997 ATCTCATAACGGTGCCGATGCCATGTCCTAGACATGGTCTTATACGGG
1 ATCTCATATCGATGTCGATGCCATATCCCAGACATGGTCTTATATGGG
* * * * * * *
22774045 ACCTCATATCGATGCCAATGCCATATTCCAGATATGGTTTTACATGGG
1 ATCTCATATCGATGTCGATGCCATATCCCAGACATGGTCTTATATGGG
* *
22774093 ATCTCATA-CTGATGTCGATGCCATGTCCCAGACGTGGTCTTATATGGG
1 ATCTCATATC-GATGTCGATGCCATATCCCAGACATGGTCTTATATGGG
* * * * * * *
22774141 ATCACTTATCGATGTCGATGCCATATCCCATATATGATCTTACAAGGG
1 ATCTCATATCGATGTCGATGCCATATCCCAGACATGGTCTTATATGGG
* * * * * * ** *
22774189 ATCTCATCTCAATTTTGATGCCATACCCCAGATATCATCTTATACGGG
1 ATCTCATATCGATGTCGATGCCATATCCCAGACATGGTCTTATATGGG
22774237 ATCTCA
1 ATCTCA
22774243 ATACTCACAT
Statistics
Matches: 156, Mismatches: 40, Indels: 4
0.78 0.20 0.02
Matches are distributed among these distances:
47 1 0.01
48 154 0.99
49 1 0.01
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (48 bp):
ATCTCATATCGATGTCGATGCCATATCCCAGACATGGTCTTATATGGG
Found at i:22774209 original size:96 final size:96
Alignment explanation
Indices: 22774012--22774237 Score: 247
Period size: 96 Copynumber: 2.4 Consensus size: 96
22774002 ATAACGGTGC
* * *
22774012 CGATGCCATGTCCTAGACATGGTCTTATACGGGACCTCATATCGATGCCAATGCCATATTCCAGA
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCACATATCGATGCCAATGCCATATCCCAGA
* * * *
22774077 TATGGTTTTACATGGGATCTCATACTGATGT
66 TATGATCTTACAAGGGATCTCATACTAATGT
* * * * * * *
22774108 CGATGCCATGTCCCAGACGTGGTCTTATATGGGATCACTTATCGATGTCGATGCCATATCCCATA
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGACCACATATCGATGCCAATGCCATATCCCAGA
*
22774173 TATGATCTTACAAGGGATCTCAT-CTCAATTT
66 TATGATCTTACAAGGGATCTCATACT-AATGT
* ** * **
22774204 TGATGCCATACCCCAGATATCATCTTATACGGGA
1 CGATGCCATGTCCCAGACATGGTCTTATACGGGA
22774238 TCTCAATACT
Statistics
Matches: 106, Mismatches: 23, Indels: 2
0.81 0.18 0.02
Matches are distributed among these distances:
95 2 0.02
96 104 0.98
ACGTcount: A:0.26, C:0.24, G:0.19, T:0.31
Consensus pattern (96 bp):
CGATGCCATGTCCCAGACATGGTCTTATACGGGACCACATATCGATGCCAATGCCATATCCCAGA
TATGATCTTACAAGGGATCTCATACTAATGT
Found at i:22781123 original size:25 final size:24
Alignment explanation
Indices: 22781088--22781139 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 24
22781078 ACAAATGCAA
22781088 CTCTTTATGAGCATCCTGATATAGG
1 CTCTTTATGAGCATCCTGATAT-GG
* *
22781113 CTCTTTGTGAGCTTCCTGATATGG
1 CTCTTTATGAGCATCCTGATATGG
22781137 CTC
1 CTC
22781140 GCTTGAACTT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
24 5 0.20
25 20 0.80
ACGTcount: A:0.17, C:0.23, G:0.21, T:0.38
Consensus pattern (24 bp):
CTCTTTATGAGCATCCTGATATGG
Found at i:22784620 original size:40 final size:40
Alignment explanation
Indices: 22784550--22784645 Score: 142
Period size: 40 Copynumber: 2.4 Consensus size: 40
22784540 AAACAGAGTA
* *
22784550 CCTTCGGGATTTAG-CCGGATATAGCTACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
22784589 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGCT-ACTCGCACAAATG
*
22784629 CCTTCGGGGCTTAGCCC
1 CCTTCGGGACTTAGCCC
22784646 NNNNNNNNNN
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
39 14 0.27
40 38 0.73
ACGTcount: A:0.22, C:0.29, G:0.24, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGCTACTCGCACAAATG
Found at i:22798081 original size:55 final size:53
Alignment explanation
Indices: 22797879--22798133 Score: 236
Period size: 55 Copynumber: 4.8 Consensus size: 53
22797869 ACATGGGTAC
* * * * * *
22797879 CTTACCATTGCCTTGACTTGTCATGGTCTTACGTGATATCC-T---TTTAGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTTAGAA
* * * *
22797928 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTACC-TTATGAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTTA-GAA
* * * *
22797981 CTCACCAATTCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCC-TTGCCTT-TAG-AA
* * * *
22798036 CTTATCAATGCCATGTCTTGACATGGTCTTACTTGATATCCTTGCC-TTAGAAA
1 CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTTAG-AA
22798089 CCTTACCAATTGCCATGCCTTGACATGGTCTTACATGGTATCCTT
1 -CTTACCAA-TGCCATGCCTTGACATGGTCTTACATGGTATCCTT
22798134 AAACCCTAAT
Statistics
Matches: 167, Mismatches: 27, Indels: 18
0.79 0.13 0.08
Matches are distributed among these distances:
49 35 0.21
50 1 0.01
52 5 0.03
53 43 0.26
54 10 0.06
55 71 0.43
56 2 0.01
ACGTcount: A:0.22, C:0.25, G:0.16, T:0.36
Consensus pattern (53 bp):
CTTACCAATGCCATGCCTTGACATGGTCTTACATGGTATCCTTGCCTTTAGAA
Found at i:22798503 original size:29 final size:29
Alignment explanation
Indices: 22798470--22798526 Score: 78
Period size: 29 Copynumber: 2.0 Consensus size: 29
22798460 TCCTTGACTC
*
22798470 AAACTTTGGCAAAATTACACTTTTCCCCT
1 AAACTTTGACAAAATTACACTTTTCCCCT
* * *
22798499 AAACTTTTACATATTTACACTTTTCCCC
1 AAACTTTGACAAAATTACACTTTTCCCC
22798527 CAAGGCTCGG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
29 24 1.00
ACGTcount: A:0.30, C:0.28, G:0.04, T:0.39
Consensus pattern (29 bp):
AAACTTTGACAAAATTACACTTTTCCCCT
Found at i:22808554 original size:53 final size:55
Alignment explanation
Indices: 22808455--22808592 Score: 138
Period size: 53 Copynumber: 2.5 Consensus size: 55
22808445 CGGGTACCTT
* * * * *
22808455 ACCATTGCCATGACTTGTCATGGTCTTACATGGTATCATTTTCTTAT-G-AACTC
1 ACCAATGCCATGACTTGACATGGTCTTACATGGGAACATTTCCTTATAGTAACTC
* * * *
22808508 ACCAATGCCATGCCTTGGCATGGTTTTACATGGGAAC-TTTGCCTTATAGTAACTT
1 ACCAATGCCATGACTTGACATGGTCTTACATGGGAACATTT-CCTTATAGTAACTC
* * *
22808563 ATCAATGCCATGTCTTGACATGGTCCTACA
1 ACCAATGCCATGACTTGACATGGTCTTACA
22808593 AGATATCCTT
Statistics
Matches: 69, Mismatches: 13, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
52 3 0.04
53 36 0.52
54 1 0.01
55 29 0.42
ACGTcount: A:0.24, C:0.23, G:0.17, T:0.36
Consensus pattern (55 bp):
ACCAATGCCATGACTTGACATGGTCTTACATGGGAACATTTCCTTATAGTAACTC
Found at i:22808655 original size:55 final size:55
Alignment explanation
Indices: 22808460--22808657 Score: 170
Period size: 55 Copynumber: 3.6 Consensus size: 55
22808450 ACCTTACCAT
* * * ** * *
22808460 TGCCATGACTTGTCATGGTCTTACATGGTATCATTTTCTTAT-G-AACTCACCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAAACTTAACAA
* * * * * *
22808513 TGCCATGCCTTGGCATGGTTTTACATGGGAACTTTGCCTTATAGTAACTTATCAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAAACTTAACAA
* * * * *
22808568 TGCCATGTCTTGACATGGTCCTACAAGATATCCTTGCC-T-TAGAAACCTTAACAA
1 TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAAA-CTTAACAA
* *
22808622 TTTCCATGCCTTGGCATGGTCTTACGTGGTATCCTT
1 -TGCCATGCCTTGGCATGGTCTTACATGGTATCCTT
22808658 AAACCCTAAT
Statistics
Matches: 113, Mismatches: 28, Indels: 6
0.77 0.19 0.04
Matches are distributed among these distances:
53 39 0.35
54 9 0.08
55 65 0.58
ACGTcount: A:0.23, C:0.23, G:0.18, T:0.36
Consensus pattern (55 bp):
TGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTATAGAAACTTAACAA
Found at i:22811572 original size:13 final size:13
Alignment explanation
Indices: 22811556--22811587 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
22811546 GACACACACT
22811556 CGTGTGGCCCAAC
1 CGTGTGGCCCAAC
*
22811569 CGTGTGGCCCAGC
1 CGTGTGGCCCAAC
22811582 CGTGTG
1 CGTGTG
22811588 TCTCACAGGG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.09, C:0.34, G:0.38, T:0.19
Consensus pattern (13 bp):
CGTGTGGCCCAAC
Found at i:22821945 original size:18 final size:17
Alignment explanation
Indices: 22821919--22821952 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
22821909 CATAATACGG
22821919 GCCCATGTGGGCCCACAC
1 GCCCATGT-GGCCCACAC
*
22821937 GCCCGTGTGGCCCACA
1 GCCCATGTGGCCCACA
22821953 TAGCTTAGAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 8 0.53
18 7 0.47
ACGTcount: A:0.15, C:0.44, G:0.29, T:0.12
Consensus pattern (17 bp):
GCCCATGTGGCCCACAC
Found at i:22829302 original size:22 final size:23
Alignment explanation
Indices: 22829263--22829305 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
22829253 AAAATCCTAC
*
22829263 CCATCTAGCCTCTACACTCCACT
1 CCATCCAGCCTCTACACTCCACT
22829286 CCATCCAGCC-CTACACTCCA
1 CCATCCAGCCTCTACACTCCA
22829306 TGTGGGGATA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.23, C:0.51, G:0.05, T:0.21
Consensus pattern (23 bp):
CCATCCAGCCTCTACACTCCACT
Found at i:22830586 original size:9 final size:9
Alignment explanation
Indices: 22830572--22830602 Score: 53
Period size: 9 Copynumber: 3.4 Consensus size: 9
22830562 CTCCAAAGAA
*
22830572 AAGAGAAAG
1 AAGAGAGAG
22830581 AAGAGAGAG
1 AAGAGAGAG
22830590 AAGAGAGAG
1 AAGAGAGAG
22830599 AAGA
1 AAGA
22830603 AGAAGTAATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
9 21 1.00
ACGTcount: A:0.61, C:0.00, G:0.39, T:0.00
Consensus pattern (9 bp):
AAGAGAGAG
Found at i:22832447 original size:100 final size:100
Alignment explanation
Indices: 22832274--22832481 Score: 380
Period size: 100 Copynumber: 2.1 Consensus size: 100
22832264 TGTGATTTTT
*
22832274 GGATTGAAATAAATAGTATGAGTCTTAAATGAGCTAAATGTGTTGCTATAGATCAAGAAAGGCAT
1 GGATTGAAATAAATAGTATGAGTCTTAAATGAGCTAAATGTGTTGCTATAGATCAAAAAAGGCAT
*
22832339 GGAATCGATCGTGATCGGGGAAAAGAAAAGCTTTC
66 GGAATCGATCGTGATCAGGGAAAAGAAAAGCTTTC
*
22832374 GGATTGAAATAAATAGTATGAGTCTTAAATGAGCTAAATGTGTTGTTATAGATCAAAAAAGGCAT
1 GGATTGAAATAAATAGTATGAGTCTTAAATGAGCTAAATGTGTTGCTATAGATCAAAAAAGGCAT
22832439 GGAATCGATCGTGATCAGGGAAAAGAAAAGCTTTC
66 GGAATCGATCGTGATCAGGGAAAAGAAAAGCTTTC
*
22832474 GGACTGAA
1 GGATTGAA
22832482 TTATAACATT
Statistics
Matches: 104, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
100 104 1.00
ACGTcount: A:0.39, C:0.10, G:0.25, T:0.26
Consensus pattern (100 bp):
GGATTGAAATAAATAGTATGAGTCTTAAATGAGCTAAATGTGTTGCTATAGATCAAAAAAGGCAT
GGAATCGATCGTGATCAGGGAAAAGAAAAGCTTTC
Found at i:22832831 original size:50 final size:51
Alignment explanation
Indices: 22832713--22832850 Score: 167
Period size: 50 Copynumber: 2.7 Consensus size: 51
22832703 ATTGTGAATA
**
22832713 CACGTGTGTAGTACTAAGTGCAGGCTACT--ATGCATACTCAATGACTTCGAT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATG--TACTCAATGACTGAGAT
* * *
22832764 CACGTGTGTAGTTCTAAGTGCAGGCCACTACATGTA-TCAGATGA-TGAGGT
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTCA-ATGACTGAGAT
*
22832814 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTAC
1 CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTAC
22832851 CGGATTGTTG
Statistics
Matches: 75, Mismatches: 8, Indels: 8
0.82 0.09 0.09
Matches are distributed among these distances:
50 39 0.52
51 33 0.44
53 3 0.04
ACGTcount: A:0.26, C:0.20, G:0.25, T:0.28
Consensus pattern (51 bp):
CACGTGTGTAGTACTAAGTGCAGGCTACTACATGTACTCAATGACTGAGAT
Found at i:22836972 original size:27 final size:26
Alignment explanation
Indices: 22836942--22836993 Score: 61
Period size: 25 Copynumber: 2.0 Consensus size: 26
22836932 GGGAAAATCG
22836942 ATAAAGTGGTAATATGTG-AAAGTTATT
1 ATAAAGT-G-AATATGTGCAAAGTTATT
* *
22836969 ATAAGGTGAATATGTGCAAATTTAT
1 ATAAAGTGAATATGTGCAAAGTTAT
22836994 GTTTATGAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 8 0.36
26 8 0.36
27 6 0.27
ACGTcount: A:0.40, C:0.02, G:0.21, T:0.37
Consensus pattern (26 bp):
ATAAAGTGAATATGTGCAAAGTTATT
Found at i:22837440 original size:65 final size:65
Alignment explanation
Indices: 22837336--22837467 Score: 246
Period size: 65 Copynumber: 2.0 Consensus size: 65
22837326 ATTAAGAGTC
*
22837336 ATACTTTAATGCATGGATTCCTTATTGAGTTTATTTTTAAGGGAAACAAACGAATGGTCGTTGGA
1 ATACTTTAATGCATGGATTCCTTATTGAGTCTATTTTTAAGGGAAACAAACGAATGGTCGTTGGA
*
22837401 ATACTTTATTGCATGGATTCCTTATTGAGTCTATTTTTAAGGGAAACAAACGAATGGTCGTTGGA
1 ATACTTTAATGCATGGATTCCTTATTGAGTCTATTTTTAAGGGAAACAAACGAATGGTCGTTGGA
22837466 AT
1 AT
22837468 TCTGTACAGG
Statistics
Matches: 65, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
65 65 1.00
ACGTcount: A:0.30, C:0.11, G:0.21, T:0.37
Consensus pattern (65 bp):
ATACTTTAATGCATGGATTCCTTATTGAGTCTATTTTTAAGGGAAACAAACGAATGGTCGTTGGA
Found at i:22840052 original size:40 final size:39
Alignment explanation
Indices: 22839968--22840152 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
22839958 TTGAATGATG
* * * *
22839968 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
22840008 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
*
22840048 TCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
22840087 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTACTA-AA
* *
22840128 -CCGGTCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
22840153 AACGAGTAGC
Statistics
Matches: 123, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
39 35 0.28
40 78 0.63
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:22840104 original size:79 final size:81
Alignment explanation
Indices: 22839968--22840152 Score: 218
Period size: 79 Copynumber: 2.3 Consensus size: 81
22839958 TTGAATGATG
* *
22839968 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
22840032 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
22840047 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
22840109 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* * *
22840127 ACCGGTCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
22840153 AACGAGTAGC
Statistics
Matches: 90, Mismatches: 11, Indels: 8
0.83 0.10 0.07
Matches are distributed among these distances:
78 1 0.01
79 56 0.62
80 33 0.37
ACGTcount: A:0.25, C:0.23, G:0.27, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:22840183 original size:79 final size:79
Alignment explanation
Indices: 22840007--22840185 Score: 186
Period size: 79 Copynumber: 2.3 Consensus size: 79
22839997 AAGTGACCAT
* * *
22840007 ATCCGGACTAAGA-TCCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATT
1 ATCCGGATTAA-ATTCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATT
**
22840071 TGTGCGAGTTACTAA
65 TGAACGAGTTACTAA
* * * * * *
22840086 ATCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACT-ATAACCGGTCTATGTCCCGAAGGCAT
1 ATCCGGATTAAATTCCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCAT
*
22840150 TTGAACGAG-TAGCTAT
64 TTGAACGAGTTA-CTAA
22840166 ATCC-GATTAAATTCCGAAGG
1 ATCCGGATTAAATTCCGAAGG
22840186 TACGTGATTT
Statistics
Matches: 81, Mismatches: 15, Indels: 8
0.78 0.14 0.08
Matches are distributed among these distances:
78 2 0.02
79 54 0.67
80 25 0.31
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.25
Consensus pattern (79 bp):
ATCCGGATTAAATTCCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTT
GAACGAGTTACTAA
Found at i:22861272 original size:40 final size:40
Alignment explanation
Indices: 22861228--22861491 Score: 388
Period size: 40 Copynumber: 6.6 Consensus size: 40
22861218 AAGTGAATAT
* * * * **
22861228 ATCCGGATTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAA
1 ATCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTGTTAA
22861268 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
22861308 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
22861348 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
22861388 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * **
22861428 ATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAA
1 ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
* * *
22861467 AACCGGGCTATGTCCCGAAGGCATT
1 ATCCGGGTTAAGTCCCGAAGGCATT
22861492 TGAACGAGGA
Statistics
Matches: 211, Mismatches: 12, Indels: 3
0.93 0.05 0.01
Matches are distributed among these distances:
39 35 0.17
40 176 0.83
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (40 bp):
ATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAA
Found at i:22861326 original size:80 final size:80
Alignment explanation
Indices: 22861189--22861491 Score: 389
Period size: 80 Copynumber: 3.8 Consensus size: 80
22861179 TTGAATGCTG
* * * * * * *
22861189 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTG-TTAAATCCGGGTTAAG-TCCCGAAGGCA
* * **
22861251 TTTGTGCGAGATACTAAA
63 TTCGTGCGAGTTGTTAAA
22861269 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
22861334 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
22861349 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
22861414 GTGCGAGTTGTTAAA
66 GTGCGAGTTGTTAAA
* * ** * * *
22861429 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT
22861492 TGAACGAGGA
Statistics
Matches: 202, Mismatches: 18, Indels: 7
0.89 0.08 0.03
Matches are distributed among these distances:
79 34 0.17
80 160 0.79
81 8 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (80 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
GTGCGAGTTGTTAAA
Found at i:22861402 original size:120 final size:119
Alignment explanation
Indices: 22861189--22861491 Score: 396
Period size: 120 Copynumber: 2.5 Consensus size: 119
22861179 TTGAATGCTG
* * * * * *
22861189 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAG-TGAATATATCCGGATTAAGAT-CCGAAGGCCT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTG-ATAAATCCGGGTTAAG-TCCCGAAGGCAT
*
22861252 TTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
63 TCGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
*
22861309 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTC
* **
22861374 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
65 GTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
* * * * *
22861429 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTT-ACTAAAACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGA-TAAATCCGGGTTAAGTCCCGAAGGCATT
22861492 TGAACGAGGA
Statistics
Matches: 162, Mismatches: 17, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
119 34 0.21
120 122 0.75
121 6 0.04
ACGTcount: A:0.24, C:0.20, G:0.29, T:0.27
Consensus pattern (119 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTGATAAATCCGGGTTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
Found at i:22873258 original size:51 final size:48
Alignment explanation
Indices: 22873078--22873265 Score: 164
Period size: 49 Copynumber: 3.8 Consensus size: 48
22873068 AGCCGAAGCT
* * *
22873078 ATCTGGTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCAATA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACC-ATA
** * *
22873127 GCCTGGTACACGTAGTAGCCTAG-ACTTAGTACTACACACATGACC-TCA
1 ATCTGGTACACATAGTAGCCT-GCACTTAGTACTACACACGTGACCAT-A
** * *
22873175 CCATCTAATACACATACTAGCCTGCACTTAGTACTACACACGTGATCACAGTT
1 --ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGA-C-CA-TA
* * *
22873228 TTCGGGTACGCATAGTAGCCTGCACTTAGTACTACACA
1 ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACA
22873266 TGCGACCTCA
Statistics
Matches: 109, Mismatches: 21, Indels: 16
0.75 0.14 0.11
Matches are distributed among these distances:
47 1 0.01
48 1 0.01
49 37 0.34
50 35 0.32
51 33 0.30
52 1 0.01
54 1 0.01
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (48 bp):
ATCTGGTACACATAGTAGCCTGCACTTAGTACTACACACGTGACCATA
Found at i:22876505 original size:48 final size:48
Alignment explanation
Indices: 22876453--22876586 Score: 207
Period size: 48 Copynumber: 2.8 Consensus size: 48
22876443 AGTATATGTG
*
22876453 ATACATTGAGTTGGCTTCAGGCCATGATATTGGCACTTCGAGTTCGAC
1 ATACATTGAGTTGGCTTCAGGCCATGATATTGGCACTTCGAGTGCGAC
* *
22876501 ATACATTGAGTTGGCTTC-GAGCCATGATATTGGCACTTCGGGTGCGAG
1 ATACATTGAGTTGGCTTCAG-GCCATGATATTGGCACTTCGAGTGCGAC
* *
22876549 ATACATTGAGTTGGCTTCAGGCCATGATGTTTGCACTT
1 ATACATTGAGTTGGCTTCAGGCCATGATATTGGCACTT
22876587 ATTGTGTGAG
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
47 1 0.01
48 77 0.97
49 1 0.01
ACGTcount: A:0.22, C:0.19, G:0.27, T:0.32
Consensus pattern (48 bp):
ATACATTGAGTTGGCTTCAGGCCATGATATTGGCACTTCGAGTGCGAC
Found at i:22886962 original size:87 final size:87
Alignment explanation
Indices: 22886816--22886988 Score: 328
Period size: 87 Copynumber: 2.0 Consensus size: 87
22886806 CGGATAGAGA
22886816 TCCGAGATTTACCTCACGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTACCAAGCTGCATTTTA
1 TCCGAGATTTACCTCACGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTACCAAGCTGCATTTTA
22886881 GCACCGCTTTTCACCCCCAAAT
66 GCACCGCTTTTCACCCCCAAAT
22886903 TCCGAGATTTACCTCACGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTACCAAGCTGCATTTTA
1 TCCGAGATTTACCTCACGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTACCAAGCTGCATTTTA
* *
22886968 GCACTGCTTTTCATCCCCAAA
66 GCACCGCTTTTCACCCCCAAA
22886989 CCGATGGTCA
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
87 84 1.00
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.29
Consensus pattern (87 bp):
TCCGAGATTTACCTCACGATTTTGGAAGAAATTGCAAGAAGCTTTGGGTACCAAGCTGCATTTTA
GCACCGCTTTTCACCCCCAAAT
Found at i:22890686 original size:14 final size:14
Alignment explanation
Indices: 22890667--22890718 Score: 56
Period size: 13 Copynumber: 3.9 Consensus size: 14
22890657 ACACTCTTTT
22890667 TCTTTCTTTTCATC
1 TCTTTCTTTTCATC
22890681 TCTTTCTTTTC-TC
1 TCTTTCTTTTCATC
* **
22890694 ACGATCTTTTCA-C
1 TCTTTCTTTTCATC
22890707 TCTTT-TTTTCAT
1 TCTTTCTTTTCAT
22890719 TTTTCCTTTC
Statistics
Matches: 30, Mismatches: 6, Indels: 5
0.73 0.15 0.12
Matches are distributed among these distances:
12 6 0.20
13 13 0.43
14 11 0.37
ACGTcount: A:0.10, C:0.27, G:0.02, T:0.62
Consensus pattern (14 bp):
TCTTTCTTTTCATC
Done.