Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 65 of 297
Found at i:22890732 original size:20 final size:20
Alignment explanation
Indices: 22890707--22890751 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
22890697 ATCTTTTCAC
* *
22890707 TCTTTTTTTCATTTTTCCTT
1 TCTTTTTCTCAATTTTCCTT
*
22890727 TCTTTTTCTCAATTTTCTTT
1 TCTTTTTCTCAATTTTCCTT
22890747 TCTTT
1 TCTTT
22890752 AGCACTTTCA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.07, C:0.20, G:0.00, T:0.73
Consensus pattern (20 bp):
TCTTTTTCTCAATTTTCCTT
Found at i:22903305 original size:28 final size:28
Alignment explanation
Indices: 22903239--22903366 Score: 175
Period size: 28 Copynumber: 4.5 Consensus size: 28
22903229 CATGAGATTG
* * **
22903239 GCACTAAGTGTGCGGGTTTAAATTGCATA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
*
22903268 GCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22903296 GCACTAAGTGTGCGAGTTTGATTATGTAA
1 GCACTAAGTGTGCGAGTTTGATTATAT-A
22903325 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22903353 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22903367 GACTTACTAT
Statistics
Matches: 89, Mismatches: 9, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
28 45 0.51
29 44 0.49
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22903328 original size:57 final size:57
Alignment explanation
Indices: 22903239--22903366 Score: 186
Period size: 57 Copynumber: 2.2 Consensus size: 57
22903229 CATGAGATTG
*
22903239 GCACTAAGTGTGCGGGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
* * * *
22903296 GCACTAAGTGTGCGAGTTTGATTATGTA-AGCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTAAAT-TGCATAGCACTAAGTGTGCAAGTTTGATTATATA
*
22903353 ACACTAAGTGTGCG
1 GCACTAAGTGTGCG
22903367 GACTTACTAT
Statistics
Matches: 64, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
57 61 0.95
58 3 0.05
ACGTcount: A:0.29, C:0.12, G:0.26, T:0.33
Consensus pattern (57 bp):
GCACTAAGTGTGCGAGTTTAAATTGCATAGCACTAAGTGTGCAAGTTTGATTATATA
Found at i:22911380 original size:30 final size:30
Alignment explanation
Indices: 22911345--22911401 Score: 87
Period size: 30 Copynumber: 1.9 Consensus size: 30
22911335 TTTACGAGTG
*
22911345 TAGGGGCAAAAATGTAATTTTGACAAAGTT
1 TAGGGGCAAAAATGTAATATTGACAAAGTT
* *
22911375 TAGGGGCAAAATTGTAATATTGCCAAA
1 TAGGGGCAAAAATGTAATATTGACAAA
22911402 ATATGATTTT
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.40, C:0.09, G:0.23, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATATTGACAAAGTT
Found at i:22917010 original size:40 final size:41
Alignment explanation
Indices: 22916961--22917231 Score: 349
Period size: 40 Copynumber: 6.7 Consensus size: 41
22916951 TTTGAATTTT
* * *
22916961 TCCGGGCTAAGTCCCGAAGGCAATTGTGCTAG-TGATTTTA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
*
22917001 TCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGA-TATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
* *
22917041 TCCGGGCTAAGACCCGCAA-GCATTTATGCGAGTTGA-TATA
1 TCCGGGCTAAGACCCG-AAGGCAATTGTGCGAGTTGATTATA
* *
22917081 TCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT-TATA
*
22917123 TCCGGGCTAAGACCCGAAGGCAATTGTGCAAGTTGA-TATA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
* *
22917163 TCCGGGCTAAGACCCGAAGGC-ATTCGTGCGAGTTG-CTATG
1 TCCGGGCTAAGACCCGAAGGCAATT-GTGCGAGTTGATTATA
* *
22917203 CCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TCCGGGCTAAGACCCGAAGGCAATTGTGC
22917232 TTGTGGTAAT
Statistics
Matches: 209, Mismatches: 14, Indels: 16
0.87 0.06 0.07
Matches are distributed among these distances:
39 4 0.02
40 160 0.77
41 8 0.04
42 37 0.18
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (41 bp):
TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGATTATA
Found at i:22917176 original size:122 final size:120
Alignment explanation
Indices: 22916961--22917231 Score: 391
Period size: 122 Copynumber: 2.2 Consensus size: 120
22916951 TTTGAATTTT
* * * *
22916961 TCCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTGATTTTATCCGGGCTAAGACCCGAAGGCATTT
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAATT
* *
22917026 GTGCGAGTTGATATATCCGGGCTAAGACCCGCAA-GCATTTATGCGAGTTGATATA
66 GTGCAAGTTGATATATCCGGGCTAAGACCCG-AAGGCATTCATGCGAGTTGATATA
* *
22917081 TCCGGGCTAAGACCCGCAGGCATTTGTGCGAGTTGATATATATCCGGGCTAAGACCCGAAGGCAA
1 TCCGGGCTAAGACCCGAAGGCAATTGTGCGAG-TGAT-TATATCCGGGCTAAGACCCGAAGGCAA
* * *
22917146 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCGTGCGAGTTGCTATG
64 TTGTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGATATA
* *
22917203 CCCGGGTTAAGACCCGAAGGCAATTGTGC
1 TCCGGGCTAAGACCCGAAGGCAATTGTGC
22917232 TTGTGGTAAT
Statistics
Matches: 133, Mismatches: 15, Indels: 4
0.88 0.10 0.03
Matches are distributed among these distances:
120 28 0.21
121 6 0.05
122 99 0.74
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (120 bp):
TCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTGATTATATCCGGGCTAAGACCCGAAGGCAATT
GTGCAAGTTGATATATCCGGGCTAAGACCCGAAGGCATTCATGCGAGTTGATATA
Found at i:22919774 original size:46 final size:46
Alignment explanation
Indices: 22919677--22919890 Score: 190
Period size: 46 Copynumber: 4.6 Consensus size: 46
22919667 ATGCCTACGT
* * *
22919677 CATGTCCCGGACATGGTCTTACACTAGCT-TTA-CTTGTA-GCTGATG
1 CATGTCCCAGACAT-GTCTTACACTAGCTCTCATCTCG-AGGCTGATG
*
22919722 CATGTCCCAGACATGTCTTACACTGGCT-TGCATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCT-CATCTCGAGGCTGATG
* * * *
22919768 CATGTCCCAAACATGTCTTACACTAGCTCTCGTCTCAATG-TCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCT-GATG
* * * * *
22919814 CCATGTCCC-GAACATGGTCTTACAGTAGCTCTCGTAAT-GTGGCCGATG
1 -CATGTCCCAG-ACAT-GTCTTACACTAGCTCTCAT-CTCGAGGCTGATG
22919862 CATGTCCCAGACATGTCTTACACTAGCTC
1 CATGTCCCAGACATGTCTTACACTAGCTC
22919891 AAATAATCCA
Statistics
Matches: 141, Mismatches: 17, Indels: 21
0.79 0.09 0.12
Matches are distributed among these distances:
44 14 0.10
45 16 0.11
46 61 0.43
47 25 0.18
48 24 0.17
49 1 0.01
ACGTcount: A:0.21, C:0.29, G:0.21, T:0.29
Consensus pattern (46 bp):
CATGTCCCAGACATGTCTTACACTAGCTCTCATCTCGAGGCTGATG
Found at i:22931492 original size:39 final size:40
Alignment explanation
Indices: 22931449--22931616 Score: 139
Period size: 40 Copynumber: 4.2 Consensus size: 40
22931439 CTCGTTCAAG
* * * *
22931449 TGCCTTCGGGACATAGCCCGG-TTATAGTAACTCATAC-AA
1 TGCCTTCGGGACTTAACCCGGATTATA-AAACTCACACGAA
* * *
22931488 TGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACGAA
1 TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
* * *
22931528 TGCCTTCGGGACTTAACCCGGAATTAGT--ATCTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTA-TAAAACTCACACGAA
* * * *
22931568 GGCCTTCGGGACTTAACCCGGAATTA-ATAACTCGCACAAA
1 TGCCTTCGGGACTTAACCCGG-ATTATAAAACTCACACGAA
22931608 TGCCTTCGG
1 TGCCTTCGG
22931617 ATCTTAGTCC
Statistics
Matches: 109, Mismatches: 14, Indels: 11
0.81 0.10 0.08
Matches are distributed among these distances:
39 25 0.23
40 80 0.73
41 3 0.03
42 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.21, T:0.25
Consensus pattern (40 bp):
TGCCTTCGGGACTTAACCCGGATTATAAAACTCACACGAA
Found at i:22931600 original size:80 final size:80
Alignment explanation
Indices: 22931484--22931669 Score: 220
Period size: 80 Copynumber: 2.3 Consensus size: 80
22931474 AGTAACTCAT
* * * *
22931484 ACAATGCCTTTGGGACTTAACCCGGATTTTAAAACTCGCACGAATGCCTTCGGGA-CTTAACCCG
1 ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTC-GGATCTTAACCCG
*
22931548 GA-ATTAGT-A-TCTCGC
65 GATA-TAGTCACT-TAGC
**
22931563 ACAAAGGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACAAATGCCTTCGGATCTTAGTCC
1 ACAAA-GCCTTCGGGACTTAACCCGGATATTAA-AACTCGCACAAATGCCTTCGGATCTTAACCC
22931627 GGATATAGTCACTTAGC
64 GGATATAGTCACTTAGC
*
22931644 ACAAAGCCTTCGGGACTTAGCCCGGA
1 ACAAAGCCTTCGGGACTTAACCCGGA
22931670 CAGCATTCAA
Statistics
Matches: 93, Mismatches: 8, Indels: 11
0.83 0.07 0.10
Matches are distributed among these distances:
79 11 0.12
80 71 0.76
81 10 0.11
82 1 0.01
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (80 bp):
ACAAAGCCTTCGGGACTTAACCCGGATATTAAAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATAGTCACTTAGC
Found at i:22931629 original size:40 final size:40
Alignment explanation
Indices: 22931486--22931669 Score: 196
Period size: 40 Copynumber: 4.6 Consensus size: 40
22931476 TAACTCATAC
* * *
22931486 AATGCCTTTGGGACTTAACCCGGATTTTAA-AACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGA-ATTAATAACTCGCACA
* *
22931526 AATGCCTTCGGGACTTAACCCGGAATTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
*
22931566 AAGGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
1 AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
** * * *
22931606 AATGCCTTC-GGATCTTAGTCCGG-ATATAGTCACTTAGCACA
1 AATGCCTTCGGGA-CTTAACCCGGAAT-TAATAAC-TCGCACA
*
22931647 AA-GCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
22931670 CAGCATTCAA
Statistics
Matches: 123, Mismatches: 15, Indels: 11
0.83 0.10 0.07
Matches are distributed among these distances:
39 8 0.07
40 104 0.85
41 11 0.09
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.24
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGAATTAATAACTCGCACA
Found at i:22935833 original size:26 final size:27
Alignment explanation
Indices: 22935787--22935848 Score: 74
Period size: 26 Copynumber: 2.3 Consensus size: 27
22935777 ATATTTTCTC
*
22935787 AAAATTTTACAAGGAAAAAAATCGT-T
1 AAAATTTTACAAGGAAAAAAATCGTCA
**
22935813 AAAATTTTACCAAGG-GTAAAATCGTCA
1 AAAATTTTA-CAAGGAAAAAAATCGTCA
22935840 AAAATTTTA
1 AAAATTTTA
22935849 TTGGTAGGGA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
26 17 0.55
27 14 0.45
ACGTcount: A:0.50, C:0.10, G:0.11, T:0.29
Consensus pattern (27 bp):
AAAATTTTACAAGGAAAAAAATCGTCA
Found at i:22936760 original size:32 final size:33
Alignment explanation
Indices: 22936723--22936792 Score: 124
Period size: 32 Copynumber: 2.2 Consensus size: 33
22936713 ATTGTAGGGA
*
22936723 TATTTTAGTATAATTAGAGCTCTAATCTAAGCC
1 TATTTTAGTATAATTAGAACTCTAATCTAAGCC
22936756 -ATTTTAGTATAATTAGAACTCTAATCTAAGCC
1 TATTTTAGTATAATTAGAACTCTAATCTAAGCC
22936788 TATTT
1 TATTT
22936793 AAAAGGGTCA
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
32 31 0.89
33 4 0.11
ACGTcount: A:0.34, C:0.14, G:0.10, T:0.41
Consensus pattern (33 bp):
TATTTTAGTATAATTAGAACTCTAATCTAAGCC
Found at i:22941734 original size:27 final size:27
Alignment explanation
Indices: 22941701--22942180 Score: 852
Period size: 27 Copynumber: 17.6 Consensus size: 27
22941691 TAAATTGTGC
*
22941701 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22941728 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22941755 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22941782 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22941809 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22941836 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
22941863 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
22941891 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22941918 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22941945 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
22941973 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
22942001 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
22942029 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
22942057 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
22942084 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
22942111 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
22942139 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
22942166 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
22942181 GACTTAATAT
Statistics
Matches: 444, Mismatches: 6, Indels: 6
0.97 0.01 0.01
Matches are distributed among these distances:
27 281 0.63
28 163 0.37
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:22941941 original size:82 final size:82
Alignment explanation
Indices: 22941701--22942180 Score: 874
Period size: 82 Copynumber: 5.9 Consensus size: 82
22941691 TAAATTGTGC
*
22941701 AGCACTAAGTGTGCGA-ATTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
22941765 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
22941782 AGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
22941846 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
*
22941863 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
22941928 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
22941945 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAG
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAG-TTGACTATGTAGCACTAAG
22942010 TGTGCGAGTTTGACTATGT
65 TGTGCGAG-TTGACTATGT
22942029 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
22942094 GTGCGAGTTGACTATGT
66 GTGCGAGTTGACTATGT
* * * *
22942111 AGCACTAAGTGTGCGAGTTTGATTATGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGT
1 AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
22942176 GTGCG
66 GTGCG
22942181 GACTTAATAT
Statistics
Matches: 389, Mismatches: 6, Indels: 7
0.97 0.01 0.02
Matches are distributed among these distances:
81 97 0.25
82 183 0.47
83 54 0.14
84 55 0.14
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (82 bp):
AGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGT
GTGCGAGTTGACTATGT
Found at i:22945743 original size:29 final size:30
Alignment explanation
Indices: 22945710--22945767 Score: 75
Period size: 30 Copynumber: 2.0 Consensus size: 30
22945700 CGAATTTCTC
22945710 TTATTAC-CATAGTAGCC-CAAAATTTTCAT
1 TTATTACACAT-GTAGCCACAAAATTTTCAT
* *
22945739 TTATTTCACATTTAGCCACAAAATTTTCA
1 TTATTACACATGTAGCCACAAAATTTTCA
22945768 CATTTCACAG
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 11 0.44
30 14 0.56
ACGTcount: A:0.34, C:0.21, G:0.05, T:0.40
Consensus pattern (30 bp):
TTATTACACATGTAGCCACAAAATTTTCAT
Found at i:22947779 original size:125 final size:124
Alignment explanation
Indices: 22947556--22947927 Score: 460
Period size: 125 Copynumber: 3.0 Consensus size: 124
22947546 GGAACTACTA
* * * * *
22947556 TAGAAAAAGAGCGTCCACGTGAGAGCTTTTTTCAGTACTTTTACTGATAGTGCATCCTTCTTCAA
1 TAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
* *
22947621 GCATTCTTTTACACTATTTTTTATAACATTCTTCTTAAAATTATTTTTTCAGAAACTACCG
66 GCATT-TTTTACACTA-TTTTTATAAAATTCTTCTCAAAATTATTTTTTCAGAAACTACCG
* * *
22947682 TAGAAAAAAAG-GTCCACGTGGGAGCTTCTTTCAGTACTTTTGCTAATAATGCATCCTGCTTGAA
1 TAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
* * * * *
22947746 ACATTTTTTACACTATTTTTATAATATTGTCTTCTCAAAATTATTTTCTCAAAAACTACTG
66 GCATTTTTTACACTATTTTTATAA-AAT-TCTTCTCAAAATTATTTTTTCAGAAACTACCG
* * *
22947807 TAG-AAAAAAGCGTCCACGTGGAAGCTTTTTTTCGGTACTTTTGCTGACAGTGCATCCTGCTTGA
1 TAGAAAAAAAGCGTCCACGTGGGAGC-TTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGA
* * * *
22947871 CGCATTTTTGACACTATTTTTTTCAAAACTATCTTCTCAAAATTATTTTTCCAGAAA
65 AGCATTTTTTACACTATTTTTAT-AAAA-T-TCTTCTCAAAATTATTTTTTCAGAAA
22947928 TTACTAGACA
Statistics
Matches: 210, Mismatches: 30, Indels: 11
0.84 0.12 0.04
Matches are distributed among these distances:
123 9 0.04
124 18 0.09
125 94 0.45
126 63 0.30
127 26 0.12
ACGTcount: A:0.29, C:0.19, G:0.13, T:0.39
Consensus pattern (124 bp):
TAGAAAAAAAGCGTCCACGTGGGAGCTTTTTTCAGTACTTTTGCTGATAGTGCATCCTGCTTGAA
GCATTTTTTACACTATTTTTATAAAATTCTTCTCAAAATTATTTTTTCAGAAACTACCG
Found at i:22948073 original size:34 final size:31
Alignment explanation
Indices: 22948023--22948136 Score: 99
Period size: 31 Copynumber: 3.7 Consensus size: 31
22948013 CACAAAATTA
* *
22948023 TTTTT-AAAAACTCTAAACCCTAATTTAATTTAT
1 TTTTTAAAAAACCCTAAACCCTAATTT--GTT-T
**
22948056 TTTTTAAAAAACCCTAAACATTAATTTGTTT
1 TTTTTAAAAAACCCTAAACCCTAATTTGTTT
* * * *
22948087 TATTTAAAAAACCCTAAACCTTGATTT-ATT
1 TTTTTAAAAAACCCTAAACCCTAATTTGTTT
*
22948117 TTTTTAAAAATCCC-AAACCC
1 TTTTTAAAAAACCCTAAACCC
22948137 ATAACCCCAT
Statistics
Matches: 69, Mismatches: 11, Indels: 6
0.80 0.13 0.07
Matches are distributed among these distances:
29 5 0.07
30 14 0.20
31 25 0.36
32 2 0.03
33 5 0.07
34 18 0.26
ACGTcount: A:0.39, C:0.18, G:0.02, T:0.41
Consensus pattern (31 bp):
TTTTTAAAAAACCCTAAACCCTAATTTGTTT
Found at i:22948123 original size:30 final size:30
Alignment explanation
Indices: 22948047--22948135 Score: 119
Period size: 31 Copynumber: 3.0 Consensus size: 30
22948037 AAACCCTAAT
*
22948047 TTAATTTA-TTTTTTAAAAAACCCTAAACA
1 TTAATTTATTTTTTTAAAAAACCCTAAACC
*
22948076 TTAATTTGTTTTATTTAAAAAACCCTAAACC
1 TTAATTTATTTT-TTTAAAAAACCCTAAACC
* *
22948107 TTGATTTATTTTTTTAAAAATCCC-AAACC
1 TTAATTTATTTTTTTAAAAAACCCTAAACC
22948136 CATAACCCCA
Statistics
Matches: 53, Mismatches: 5, Indels: 4
0.85 0.08 0.06
Matches are distributed among these distances:
29 12 0.23
30 14 0.26
31 27 0.51
ACGTcount: A:0.39, C:0.16, G:0.02, T:0.43
Consensus pattern (30 bp):
TTAATTTATTTTTTTAAAAAACCCTAAACC
Found at i:22949158 original size:48 final size:48
Alignment explanation
Indices: 22949103--22949199 Score: 194
Period size: 48 Copynumber: 2.0 Consensus size: 48
22949093 CACCAATCCA
22949103 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
1 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
22949151 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
1 AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
22949199 A
1 A
22949200 TTCACATGCT
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
48 49 1.00
ACGTcount: A:0.46, C:0.29, G:0.06, T:0.19
Consensus pattern (48 bp):
AGCATTTACATACAACCAAATCAGCCACAACCAAGATATCAACACATT
Found at i:22950903 original size:13 final size:13
Alignment explanation
Indices: 22950885--22950909 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
22950875 CCAAGCATAC
22950885 GCCCATGTCCTTG
1 GCCCATGTCCTTG
22950898 GCCCATGTCCTT
1 GCCCATGTCCTT
22950910 CACACGGCCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.08, C:0.40, G:0.20, T:0.32
Consensus pattern (13 bp):
GCCCATGTCCTTG
Found at i:22954677 original size:9 final size:9
Alignment explanation
Indices: 22954663--22954694 Score: 57
Period size: 9 Copynumber: 3.7 Consensus size: 9
22954653 AAACCACAAA
22954663 TAAAATCCC
1 TAAAATCCC
22954672 TAAAATCCC
1 TAAAATCCC
22954681 TAAAATCCC
1 TAAAATCCC
22954690 -AAAAT
1 TAAAAT
22954695 TTCATCAAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
8 5 0.22
9 18 0.78
ACGTcount: A:0.50, C:0.28, G:0.00, T:0.22
Consensus pattern (9 bp):
TAAAATCCC
Found at i:22961824 original size:2 final size:2
Alignment explanation
Indices: 22961817--22961846 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
22961807 CATTCCGAAG
22961817 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
22961847 CATAAGTATG
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:22962381 original size:27 final size:28
Alignment explanation
Indices: 22962297--22962394 Score: 135
Period size: 27 Copynumber: 3.5 Consensus size: 28
22962287 CATGAGATTG
* * * *
22962297 GCACTAAGTGTGCGGGTTTAAATTGTACA
1 GCACTAAGTGTGCGAGTTT-GATTATATA
22962326 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
22962354 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
22962381 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
22962395 GACTTAATAT
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 24 0.38
28 22 0.34
29 18 0.28
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.32
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:22962405 original size:27 final size:27
Alignment explanation
Indices: 22962325--22962407 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
22962315 TAAATTGTAC
* *
22962325 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTGAATATAT
* *
22962353 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTGAATATAT
*
22962380 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-GACTTGAATATAT
22962407 A
1 A
22962408 CTTTTGAATC
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 30 0.60
28 20 0.40
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTGAATATAT
Found at i:22975567 original size:50 final size:50
Alignment explanation
Indices: 22975443--22975886 Score: 412
Period size: 50 Copynumber: 8.9 Consensus size: 50
22975433 ATTGTGAGAA
* * *** * *
22975443 CACATGTGTAGTACTATGTGCAGGCTACTATGTGTTTAAGATGGTTTTAGGC
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG--TTAGGT
* * * *
22975495 CACGTGTGTAGTACTAAATGCAGGCTACTACATCTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * *
22975545 CGCATGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * *
22975595 CACGTGTGTAGT-CATAAGTGCAGGCTACTACGTGTACCGGATTGTT-GGT
1 CACATGTGTAGTAC-TAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * *
22975644 CGCATGT-TAGTTCTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * * ** * * * *
22975693 CATATGTGTAGTACAAAGTGTAAGCTACTATGCATACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGA-TAGTT-AGGT
* * *
22975744 CACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
* * * * *
22975794 CACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCGGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
** * **
22975843 TGCATGTGTAGTACTAAGTGCAGGCTACTATGCATACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAG
22975887 CTTCAGTTTC
Statistics
Matches: 316, Mismatches: 69, Indels: 17
0.79 0.17 0.04
Matches are distributed among these distances:
48 33 0.10
49 56 0.18
50 157 0.50
51 35 0.11
52 35 0.11
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAGTTAGGT
Found at i:22982528 original size:50 final size:50
Alignment explanation
Indices: 22982441--22982684 Score: 226
Period size: 50 Copynumber: 4.9 Consensus size: 50
22982431 ATTGTGAGAA
22982441 CACATGTGTAGTACTATA-TGCAGGCTACTACT-TGTACCAGATAGTTAGGT
1 CACATGTGTAGTACTA-AGTGCAGGCTACTA-TGTGTACCAGATAGTTAGGT
** * * * * * *
22982491 TTCATGTGTAGTACTAAGTGCAGGCTATTATGCGTACCCGACAACTTCA-AT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGA-TAGTT-AGGT
* * * * * * *
22982542 CACGTGTATAGTATTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGCT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* * ** *
22982592 CACGTGTGTAGTACTAAGTGTAGGCTACTACATGTACCAGATTGTT-GGT
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
* *
22982641 CGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATAG
1 CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAG
22982685 CTTCGATTAC
Statistics
Matches: 153, Mismatches: 36, Indels: 11
0.76 0.18 0.05
Matches are distributed among these distances:
49 42 0.27
50 75 0.49
51 35 0.23
52 1 0.01
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (50 bp):
CACATGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAGTTAGGT
Found at i:22986631 original size:26 final size:26
Alignment explanation
Indices: 22986595--22986646 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
22986585 AAATCAAAGA
22986595 TAGAACTACTAGAAACAGGAGACTCC
1 TAGAACTACTAGAAACAGGAGACTCC
22986621 TAGAACTACTAGAAACAGGAGACTCC
1 TAGAACTACTAGAAACAGGAGACTCC
22986647 AGATGAGTGG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.42, C:0.23, G:0.19, T:0.15
Consensus pattern (26 bp):
TAGAACTACTAGAAACAGGAGACTCC
Found at i:22989054 original size:21 final size:23
Alignment explanation
Indices: 22989026--22989082 Score: 98
Period size: 23 Copynumber: 2.5 Consensus size: 23
22989016 TATATATAAT
22989026 ATTATATATTTAAATTTTTATTG
1 ATTATATATTTAAATTTTTATTG
22989049 ATTATATATTTAAATTTTTATTG
1 ATTATATATTTAAATTTTTATTG
*
22989072 ATCATAT-TTTA
1 ATTATATATTTA
22989083 TTGTTTAAAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
22 4 0.12
23 29 0.88
ACGTcount: A:0.35, C:0.02, G:0.04, T:0.60
Consensus pattern (23 bp):
ATTATATATTTAAATTTTTATTG
Found at i:22989384 original size:13 final size:13
Alignment explanation
Indices: 22989366--22989426 Score: 52
Period size: 13 Copynumber: 4.7 Consensus size: 13
22989356 ACCAAACTTT
22989366 TCAAAAGCATTTC
1 TCAAAAGCATTTC
*
22989379 TCAAAATCACTTT-
1 TCAAAAGCA-TTTC
* * *
22989392 TCCACAGCATTTT
1 TCAAAAGCATTTC
* *
22989405 TTAAAAGCACTTC
1 TCAAAAGCATTTC
22989418 TCAAAAGCA
1 TCAAAAGCA
22989427 ATGCTAAACT
Statistics
Matches: 36, Mismatches: 10, Indels: 4
0.72 0.20 0.08
Matches are distributed among these distances:
12 3 0.08
13 30 0.83
14 3 0.08
ACGTcount: A:0.38, C:0.25, G:0.07, T:0.31
Consensus pattern (13 bp):
TCAAAAGCATTTC
Found at i:22989410 original size:26 final size:26
Alignment explanation
Indices: 22989361--22989426 Score: 78
Period size: 26 Copynumber: 2.5 Consensus size: 26
22989351 CTTAAACCAA
*
22989361 ACTTTTCAAAAGCATTTCTCAAAATC
1 ACTTTTCAAAAGCATTTCTCAAAAGC
* * * *
22989387 ACTTTTCCACAGCATTTTTTAAAAGC
1 ACTTTTCAAAAGCATTTCTCAAAAGC
*
22989413 ACTTCTCAAAAGCA
1 ACTTTTCAAAAGCA
22989427 ATGCTAAACT
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.36, C:0.24, G:0.06, T:0.33
Consensus pattern (26 bp):
ACTTTTCAAAAGCATTTCTCAAAAGC
Found at i:22993391 original size:20 final size:20
Alignment explanation
Indices: 22993362--22993399 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
22993352 AATGTTAGAA
*
22993362 ATGGAAAAATGGAGAAATAT
1 ATGGAAAAATAGAGAAATAT
*
22993382 ATGGATAAATAGAGAAAT
1 ATGGAAAAATAGAGAAAT
22993400 GGAATTCCGT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.55, C:0.00, G:0.24, T:0.21
Consensus pattern (20 bp):
ATGGAAAAATAGAGAAATAT
Found at i:23004440 original size:19 final size:19
Alignment explanation
Indices: 23004388--23004433 Score: 74
Period size: 19 Copynumber: 2.4 Consensus size: 19
23004378 TAGCCATCGA
*
23004388 ATGTTGGCCTATAATGGTT
1 ATGTTGGCCTATGATGGTT
*
23004407 ATGATGGCCTATGATGGTT
1 ATGTTGGCCTATGATGGTT
23004426 ATGTTGGC
1 ATGTTGGC
23004434 TATTGATATA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.20, C:0.11, G:0.30, T:0.39
Consensus pattern (19 bp):
ATGTTGGCCTATGATGGTT
Found at i:23008831 original size:12 final size:12
Alignment explanation
Indices: 23008814--23008851 Score: 58
Period size: 12 Copynumber: 3.2 Consensus size: 12
23008804 CACAGCGGCT
*
23008814 TCAACTTCACCC
1 TCAACTTCATCC
23008826 TCAACTTCATCC
1 TCAACTTCATCC
*
23008838 TCATCTTCATCC
1 TCAACTTCATCC
23008850 TC
1 TC
23008852 TAGGTCTGAT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.21, C:0.45, G:0.00, T:0.34
Consensus pattern (12 bp):
TCAACTTCATCC
Found at i:23021437 original size:22 final size:21
Alignment explanation
Indices: 23021396--23021439 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 21
23021386 GAATATGCAT
23021396 ATATGAAGTTATCCATTTAGCC
1 ATATGAAGTTATCCA-TTAGCC
23021418 ATATGAATGTTATACC-TTAGCC
1 ATATGAA-GTTAT-CCATTAGCC
23021440 GAAACTAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.65
23 5 0.25
24 2 0.10
ACGTcount: A:0.32, C:0.18, G:0.14, T:0.36
Consensus pattern (21 bp):
ATATGAAGTTATCCATTAGCC
Found at i:23027078 original size:40 final size:40
Alignment explanation
Indices: 23026970--23027100 Score: 147
Period size: 40 Copynumber: 3.3 Consensus size: 40
23026960 TCTTCGGAAT
* * *
23026970 TTAG-CCGGATATAACCACAAGCACAATTGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * * * * *
23027009 TTAACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
* * *
23027049 TTAGCCCGGATAAAATCACTAGCATAAATGCCTTCGGGAC
1 TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
23027089 TTAGCCCGGATA
1 TTAGCCCGGATA
23027101 TCATTCAAAT
Statistics
Matches: 75, Mismatches: 16, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
39 3 0.04
40 72 0.96
ACGTcount: A:0.28, C:0.27, G:0.21, T:0.23
Consensus pattern (40 bp):
TTAGCCCGGATAAAACCACTAGCACAAATGCCTTCGGGTC
Found at i:23042723 original size:23 final size:22
Alignment explanation
Indices: 23042671--23042723 Score: 56
Period size: 23 Copynumber: 2.4 Consensus size: 22
23042661 TCCACGTCTT
*
23042671 TTTCTTTTGTTTCTTTTTCTAA
1 TTTCTTTTCTTTCTTTTTCTAA
23042693 -TTCATTTTCTCTTCTTTCTTC-AA
1 TTTC-TTTTCT-TTCTTT-TTCTAA
23042716 TTTCTTTT
1 TTTCTTTT
23042724 TCACTCTCAA
Statistics
Matches: 26, Mismatches: 1, Indels: 7
0.76 0.03 0.21
Matches are distributed among these distances:
21 3 0.12
22 5 0.19
23 12 0.46
24 6 0.23
ACGTcount: A:0.09, C:0.19, G:0.02, T:0.70
Consensus pattern (22 bp):
TTTCTTTTCTTTCTTTTTCTAA
Found at i:23045097 original size:4 final size:4
Alignment explanation
Indices: 23045088--23045115 Score: 56
Period size: 4 Copynumber: 7.0 Consensus size: 4
23045078 TTAAACTAAG
23045088 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
1 TAAA TAAA TAAA TAAA TAAA TAAA TAAA
23045116 AATAAAAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 24 1.00
ACGTcount: A:0.75, C:0.00, G:0.00, T:0.25
Consensus pattern (4 bp):
TAAA
Found at i:23045590 original size:18 final size:18
Alignment explanation
Indices: 23045566--23045640 Score: 114
Period size: 18 Copynumber: 4.2 Consensus size: 18
23045556 CCCAACTACT
23045566 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
* * *
23045584 ATATACGTGAATAGTGCT
1 GTATACGTGAATAGTACC
*
23045602 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
23045620 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
23045638 GTA
1 GTA
23045641 AACGGTCGTA
Statistics
Matches: 51, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 51 1.00
ACGTcount: A:0.32, C:0.15, G:0.24, T:0.29
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:23052811 original size:43 final size:43
Alignment explanation
Indices: 23052713--23052811 Score: 103
Period size: 43 Copynumber: 2.3 Consensus size: 43
23052703 TCAGATAATC
*
23052713 ACACATATCATACAATGCCAACGTCCCAGACATGGTCTTACATGT
1 ACACATAT-AT-CAATGCCAACGTCCCAGACAGGGTCTTACATGT
** * *
23052758 AGTCACATATCAATGCC-ACTGTCCCAGATAGGGTCTTAC-TCGT
1 ACACATATATCAATGCCAAC-GTCCCAGACAGGGTCTTACAT-GT
23052801 ACACATATATC
1 ACACATATATC
23052812 GGAATCATAT
Statistics
Matches: 44, Mismatches: 8, Indels: 6
0.76 0.14 0.10
Matches are distributed among these distances:
42 3 0.07
43 34 0.77
44 2 0.05
45 5 0.11
ACGTcount: A:0.31, C:0.28, G:0.14, T:0.26
Consensus pattern (43 bp):
ACACATATATCAATGCCAACGTCCCAGACAGGGTCTTACATGT
Found at i:23055202 original size:16 final size:17
Alignment explanation
Indices: 23055177--23055214 Score: 53
Period size: 16 Copynumber: 2.3 Consensus size: 17
23055167 TCGCGATCAT
23055177 TATTTTATTTA-TTA-A
1 TATTTTATTTACTTATA
23055192 TATTATTATTTACTTATA
1 TATT-TTATTTACTTATA
23055210 TATTT
1 TATTT
23055215 AACTACAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 4
0.83 0.00 0.17
Matches are distributed among these distances:
15 4 0.20
16 7 0.35
17 4 0.20
18 5 0.25
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (17 bp):
TATTTTATTTACTTATA
Found at i:23062730 original size:81 final size:82
Alignment explanation
Indices: 23062600--23062754 Score: 206
Period size: 81 Copynumber: 1.9 Consensus size: 82
23062590 AATTTTTGAG
* * * * *
23062600 CAAATATTCTTTATTCTTTCCATTTATAATTACACTATACAGATAATTATTTTTAGATTCTTTTG
1 CAAATATTCTTTATTCTTTCCATTCATAATCACACCATACAGATAATTATTCTTAGATTCTTTCG
23062665 TACTTTGGACATTCTCT
66 TACTTTGGACATTCTCT
* * *
23062682 CAAATATTCTTTTATTC-TT-CATTCATGATCATACCATACAGATGATTATTCTTAGATTCTTTC
1 CAAATATTC-TTTATTCTTTCCATTCATAATCACACCATACAGATAATTATTCTTAGATTCTTTC
*
23062745 GTTCTTTGGA
65 GTACTTTGGA
23062755 TCTTCCTTCA
Statistics
Matches: 63, Mismatches: 9, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
81 45 0.71
82 11 0.17
83 7 0.11
ACGTcount: A:0.27, C:0.17, G:0.08, T:0.48
Consensus pattern (82 bp):
CAAATATTCTTTATTCTTTCCATTCATAATCACACCATACAGATAATTATTCTTAGATTCTTTCG
TACTTTGGACATTCTCT
Found at i:23067455 original size:143 final size:143
Alignment explanation
Indices: 23067194--23067470 Score: 394
Period size: 143 Copynumber: 1.9 Consensus size: 143
23067184 TCATGGTGAC
* * * * *
23067194 TCTTATCTCCTTGAAGTTGTAGTGAAGCAGATTGAAGCCATAAGTGTTATCTTCCTGAAGTTGCA
1 TCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
* * * * * * *
23067259 GCGGAGTAGACTAAAGACAGCGAATCTTATTTCCCTGAAGTTGCAGTGGAATAGATTAAAGCTAC
66 GCGGAGCAAACTAAACACAGCGAATCTTATTTCCCTGAAGTCGCAGCGAAATAGATTAAAGCCAC
23067324 AAATTATGGCGAA
131 AAATTATGGCGAA
*
23067337 TCTTATCTCCTTGAAGTTGCAGTGGAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
1 TCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
* * *
23067402 GCGGAGCAAACTAAACACAGCGAAT-TTAATTTCCTTGAAGTCGTAGCGAAATAGATTGAAGCCA
66 GCGGAGCAAACTAAACACAGCGAATCTT-ATTTCCCTGAAGTCGCAGCGAAATAGATTAAAGCCA
23067466 CAAAT
130 CAAAT
23067471 ACACAAACAT
Statistics
Matches: 117, Mismatches: 16, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
142 2 0.02
143 115 0.98
ACGTcount: A:0.32, C:0.18, G:0.22, T:0.28
Consensus pattern (143 bp):
TCTTATCTCCTTGAAGTTGCAGTGAAGCAGATTGAAGCCACAAGTCTTATCTCCCTGAAGTTACA
GCGGAGCAAACTAAACACAGCGAATCTTATTTCCCTGAAGTCGCAGCGAAATAGATTAAAGCCAC
AAATTATGGCGAA
Found at i:23069629 original size:85 final size:85
Alignment explanation
Indices: 23069532--23069993 Score: 897
Period size: 85 Copynumber: 5.4 Consensus size: 85
23069522 TTAACATGTA
* *
23069532 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACTGTGATATATCCACTTAGCACCA
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
23069597 CGTTAATTAATCTATATATG
66 CGTTAATTAATCTATATATG
23069617 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
23069682 CGTTAATTAATCTATATATG
66 CGTTAATTAATCTATATATG
23069702 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
23069767 CGTTAATTAATCTATATATG
66 CGTTAATTAATCTATATATG
23069787 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
23069852 CGTTAATTAATCTATATATG
66 CGTTAATTAATCTATATATG
23069872 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
23069937 CGTTAATTAATCTATATATG
66 CGTTAATTAATCTATATATG
*
23069957 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT
1 TAACTGTGGCATATCCACTTAGCACCACGTTACATGT
23069994 ATCAATATGT
Statistics
Matches: 374, Mismatches: 3, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
85 374 1.00
ACGTcount: A:0.29, C:0.24, G:0.14, T:0.33
Consensus pattern (85 bp):
TAACTGTGGCATATCCACTTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCA
CGTTAATTAATCTATATATG
Found at i:23069979 original size:47 final size:48
Alignment explanation
Indices: 23069910--23070043 Score: 182
Period size: 48 Copynumber: 2.8 Consensus size: 48
23069900 GTTACATGTT
*
23069910 TAACCGTGGTATATCCACTTAGCACCACGTTA-AT-TAATCTATATATG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGT-ATCAATATATG
* *
23069957 TAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAATATGTG
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
* * * *
23070005 TAATCGTAGTATATCCACTTAGCAACACGTTACACGTAT
1 TAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
23070044 AACCGTGGTA
Statistics
Matches: 77, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
47 31 0.40
48 45 0.58
49 1 0.01
ACGTcount: A:0.31, C:0.23, G:0.14, T:0.31
Consensus pattern (48 bp):
TAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAATATATG
Found at i:23070066 original size:133 final size:132
Alignment explanation
Indices: 23069825--23070073 Score: 376
Period size: 133 Copynumber: 1.9 Consensus size: 132
23069815 GTTACATGTT
* * *
23069825 TAACCGTGGTATATCCACTTAGCACCACGTTAATTAATCTATATATGTAACTGTGGCATATCCAC
1 TAACCGTGGCATATCCACTTAGCACCACGTTAATTAATCAATATATGTAACTGTAGCATATCCAC
* * * *
23069890 TTAGCACCACGTTACATGTTTAACCGTGGTATATCCACTTAGCACCACGTTAATTAATCTATATA
66 TTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTTAATTAATCTATATA
23069955 TG
131 TG
* *
23069957 TAACCGTGGCATATCCACTTAGCACCACGTTACATGT-ATCAATATGTGTAA-TCGTAGTATATC
1 TAACCGTGGCATATCCACTTAGCACCACGTTA-AT-TAATCAATATATGTAACT-GTAGCATATC
23070020 CACTTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTT
63 CACTTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTT
23070074 TTTTCCATTC
Statistics
Matches: 105, Mismatches: 9, Indels: 5
0.88 0.08 0.04
Matches are distributed among these distances:
132 32 0.30
133 72 0.69
134 1 0.01
ACGTcount: A:0.30, C:0.24, G:0.14, T:0.31
Consensus pattern (132 bp):
TAACCGTGGCATATCCACTTAGCACCACGTTAATTAATCAATATATGTAACTGTAGCATATCCAC
TTAGCAACACGTTACACGTATAACCGTGGTATATCCACCTAGCACCACGTTAATTAATCTATATA
TG
Found at i:23074558 original size:56 final size:56
Alignment explanation
Indices: 23074491--23074599 Score: 209
Period size: 56 Copynumber: 1.9 Consensus size: 56
23074481 ACTAGACTCA
*
23074491 CATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTGGGTCAATTAATACATTT
1 CATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTGGGTCAAATAATACATTT
23074547 CATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTGGGTCAAATAATACA
1 CATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTGGGTCAAATAATACA
23074600 GTTTATTCAT
Statistics
Matches: 52, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
56 52 1.00
ACGTcount: A:0.34, C:0.13, G:0.11, T:0.42
Consensus pattern (56 bp):
CATATATTCTTACCATAAAATTTTCAGAATTTTTGGTTGGGTCAAATAATACATTT
Found at i:23075388 original size:38 final size:38
Alignment explanation
Indices: 23075345--23075417 Score: 112
Period size: 38 Copynumber: 1.9 Consensus size: 38
23075335 TTTCAAATTA
23075345 ACATGTATAA-CTGTGGCATATCCACTTAGCACCACATT
1 ACATGTATAATC-GTGGCATATCCACTTAGCACCACATT
* *
23075383 ACATGTTTAATCGTGGTATATCCACTTAGCACCAC
1 ACATGTATAATCGTGGCATATCCACTTAGCACCAC
23075418 GTTAATGAAT
Statistics
Matches: 32, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
38 31 0.97
39 1 0.03
ACGTcount: A:0.30, C:0.26, G:0.14, T:0.30
Consensus pattern (38 bp):
ACATGTATAATCGTGGCATATCCACTTAGCACCACATT
Found at i:23075553 original size:95 final size:95
Alignment explanation
Indices: 23075385--23075797 Score: 817
Period size: 95 Copynumber: 4.3 Consensus size: 95
23075375 ACCACATTAC
*
23075385 ATGTTTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
23075450 TCCACTTAACACCACGTTACATGTATCAAT
66 TCCACTTAACACCACGTTACATGTATCAAT
23075480 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
23075545 TCCACTTAACACCACGTTACATGTATCAAT
66 TCCACTTAACACCACGTTACATGTATCAAT
23075575 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
23075640 TCCACTTAACACCACGTTACATGTATCAAT
66 TCCACTTAACACCACGTTACATGTATCAAT
23075670 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
1 ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
23075735 TCCACTTAACACCACGTTACATGTATCAAT
66 TCCACTTAACACCACGTTACATGTATCAAT
23075765 ATGTGTAATCGTGGTATATCCACTTAGCACCAC
1 ATGTGTAATCGTGGTATATCCACTTAGCACCAC
23075798 ATTACACGTA
Statistics
Matches: 317, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
95 317 1.00
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (95 bp):
ATGTGTAATCGTGGTATATCCACTTAGCACCACGTTAATGAATCGATATATGTAACCGTGGCATA
TCCACTTAACACCACGTTACATGTATCAAT
Found at i:23078031 original size:16 final size:17
Alignment explanation
Indices: 23078006--23078045 Score: 57
Period size: 16 Copynumber: 2.4 Consensus size: 17
23077996 TTGCGATCAT
23078006 TATTTTATTTA-TTA-A
1 TATTTTATTTACTTATA
23078021 TATTATTATTTACTTATA
1 TATT-TTATTTACTTATA
23078039 TATTTTA
1 TATTTTA
23078046 CTGCAAATTG
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
15 4 0.18
16 7 0.32
17 6 0.27
18 5 0.23
ACGTcount: A:0.33, C:0.03, G:0.00, T:0.65
Consensus pattern (17 bp):
TATTTTATTTACTTATA
Found at i:23083335 original size:13 final size:13
Alignment explanation
Indices: 23083319--23083344 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23083309 CTGGAGACAC
23083319 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
23083332 GCCCGTGTCCTTT
1 GCCCGTGTCCTTT
23083345 CACACGGCCA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.00, C:0.38, G:0.23, T:0.38
Consensus pattern (13 bp):
GCCCGTGTCCTTT
Found at i:23084244 original size:39 final size:40
Alignment explanation
Indices: 23084183--23084308 Score: 182
Period size: 41 Copynumber: 3.1 Consensus size: 40
23084173 GCAAAAATTG
* * *
23084183 TAAAACACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGC
1 TAAAA-ACCGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
23084224 TAAAAACCGAGCATTA-CGGCGGTTTTGGTAAAACGCCGC
1 TAAAAACCGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
*
23084263 TAAAAACCAGAGTATTAGCGGCGCTTTTGGTAAAACGCCGC
1 TAAAAACC-GAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
23084304 TAAAA
1 TAAAA
23084309 GTCATATAAC
Statistics
Matches: 78, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
39 30 0.38
40 16 0.21
41 32 0.41
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (40 bp):
TAAAAACCGAGCATTAGCGGCGCTTTTGGTAAAACGCCGC
Found at i:23084297 original size:41 final size:41
Alignment explanation
Indices: 23084184--23084308 Score: 191
Period size: 39 Copynumber: 3.1 Consensus size: 41
23084174 CAAAAATTGT
* *
23084184 AAAACACAGAGCAATAGCGGCGTTTTTGGTAAAACGCCGCTA
1 AAAAC-CAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
*
23084226 AAAACC-GAGCATTA-CGGCGGTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
*
23084265 AAAACCAGAGTATTAGCGGCGCTTTTGGTAAAACGCCGCTA
1 AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
23084306 AAA
1 AAA
23084309 GTCATATAAC
Statistics
Matches: 77, Mismatches: 4, Indels: 5
0.90 0.05 0.06
Matches are distributed among these distances:
39 30 0.39
40 14 0.18
41 28 0.36
42 5 0.06
ACGTcount: A:0.34, C:0.22, G:0.24, T:0.20
Consensus pattern (41 bp):
AAAACCAGAGCATTAGCGGCGCTTTTGGTAAAACGCCGCTA
Found at i:23084950 original size:24 final size:24
Alignment explanation
Indices: 23084923--23084971 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
23084913 CGTATATTTG
23084923 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
23084947 TTAAAAGTTTATATAAAAATTAAT
1 TTAAAAGTTTATATAAAAATTAAT
23084971 T
1 T
23084972 GTTATTTTGG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (24 bp):
TTAAAAGTTTATATAAAAATTAAT
Found at i:23086202 original size:17 final size:17
Alignment explanation
Indices: 23086180--23086229 Score: 91
Period size: 17 Copynumber: 2.9 Consensus size: 17
23086170 AAAATTTAGC
23086180 TACTCTTTTTCTCTCGT
1 TACTCTTTTTCTCTCGT
*
23086197 TACTCTTTTTCTCTCTT
1 TACTCTTTTTCTCTCGT
23086214 TACTCTTTTTCTCTCG
1 TACTCTTTTTCTCTCG
23086230 ATCCTTCGTT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.06, C:0.30, G:0.04, T:0.60
Consensus pattern (17 bp):
TACTCTTTTTCTCTCGT
Found at i:23090881 original size:42 final size:43
Alignment explanation
Indices: 23090835--23090917 Score: 114
Period size: 43 Copynumber: 2.0 Consensus size: 43
23090825 ATTTTTTAGC
*
23090835 GGCG-TTGTAAAAAAAGCGTCGCTAAAGGTAATGGTCTTTATA
1 GGCGTTTGTAAAAAAAGCGACGCTAAAGGTAATGGTCTTTATA
* ** *
23090877 GGCGTTTTTAGGAAAAGCGACGCTAAAGGTTATGGTCTTTA
1 GGCGTTTGTAAAAAAAGCGACGCTAAAGGTAATGGTCTTTA
23090918 GCGATGTTTT
Statistics
Matches: 35, Mismatches: 5, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
42 4 0.11
43 31 0.89
ACGTcount: A:0.30, C:0.12, G:0.28, T:0.30
Consensus pattern (43 bp):
GGCGTTTGTAAAAAAAGCGACGCTAAAGGTAATGGTCTTTATA
Found at i:23090901 original size:43 final size:44
Alignment explanation
Indices: 23090846--23090971 Score: 136
Period size: 43 Copynumber: 2.9 Consensus size: 44
23090836 GCGTTGTAAA
*
23090846 AAAAGCGTCGCTAAAGGTAATGGTCTTTATAGGCGTTTTTAG-G
1 AAAAGCGACGCTAAAGGTAATGGTCTTTATAGGCGTTTTTAGAG
* *
23090889 AAAAGCGACGCTAAAGGTTATGGTC-TT-TA-GCGATGTTTTCGAG
1 AAAAGCGACGCTAAAGGTAATGGTCTTTATAGGCG-T-TTTTAGAG
* * *
23090932 AAAAGTGCCGCTAAAGGTCATGGTCTTTAGT-GGCGTTTTT
1 AAAAGCGACGCTAAAGGTAATGGTCTTTA-TAGGCGTTTTT
23090972 TTAAATAAAC
Statistics
Matches: 70, Mismatches: 6, Indels: 13
0.79 0.07 0.15
Matches are distributed among these distances:
40 3 0.04
41 3 0.04
42 7 0.10
43 46 0.66
44 6 0.09
45 1 0.01
46 4 0.06
ACGTcount: A:0.26, C:0.13, G:0.28, T:0.33
Consensus pattern (44 bp):
AAAAGCGACGCTAAAGGTAATGGTCTTTATAGGCGTTTTTAGAG
Found at i:23091404 original size:47 final size:47
Alignment explanation
Indices: 23091321--23091493 Score: 156
Period size: 47 Copynumber: 3.7 Consensus size: 47
23091311 CTCTTAGCCG
23091321 ATGCATGTCCCAGACACGTCTTACACTGGCTA-TCATCATTGAGGCCA
1 ATGCATGTCCCAGACACGTCTTACACTGGC-ACTCATCATTGAGGCCA
* * **
23091368 ATGCATGTCCCAAACATGTCTTACACTGGCACTCATC-TCT-ACACCA
1 ATGCATGTCCCAGACACGTCTTACACTGGCACTCATCAT-TGAGGCCA
** * * * * * *
23091414 ATGCCATGTCCCAGACGTGGTTTTACACAGGCACTCGT-AATGTGGCCG
1 ATG-CATGTCCCAGAC-ACGTCTTACACTGGCACTCATCATTGAGGCCA
* *
23091462 ATGCATGTCCCAGGCACATCTTACACTGGCAC
1 ATGCATGTCCCAGACACGTCTTACACTGGCAC
23091494 ACAAGTAATC
Statistics
Matches: 99, Mismatches: 21, Indels: 13
0.74 0.16 0.10
Matches are distributed among these distances:
46 21 0.21
47 57 0.58
48 21 0.21
ACGTcount: A:0.25, C:0.31, G:0.19, T:0.25
Consensus pattern (47 bp):
ATGCATGTCCCAGACACGTCTTACACTGGCACTCATCATTGAGGCCA
Found at i:23111885 original size:93 final size:93
Alignment explanation
Indices: 23111773--23111944 Score: 256
Period size: 93 Copynumber: 1.8 Consensus size: 93
23111763 GCCCATAAGT
* * *
23111773 GAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCATCCATAAGTGAACTCGGACTCAACGCA
1 GAACTCGGACTCAACTCAACGAG-TTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACGCA
23111837 ACGAGCTCAGATGCCTAGTTACATCTCTC
65 ACGAGCTCAGATGCCTAGTTACATCTCTC
* * *
23111866 GAACTCGGACTCAACTCAACGAGTTCAGACATTTGCATCCATAAGTGAACTCGGACTCACCTCAA
1 GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACGCAA
* *
23111931 CGAGTTCGGATGCC
66 CGAGCTCAGATGCC
23111945 CAAACATCCT
Statistics
Matches: 70, Mismatches: 8, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
92 2 0.03
93 68 0.97
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGTTCAGACATTCGCATCCATAAGTGAACTCGGACTCAACGCAA
CGAGCTCAGATGCCTAGTTACATCTCTC
Found at i:23111930 original size:46 final size:46
Alignment explanation
Indices: 23111765--23111937 Score: 167
Period size: 46 Copynumber: 3.7 Consensus size: 46
23111755 TGTAACCCGC
* * * *
23111765 CCATAAGTGAACTCGGACTCAACTCAACGAGCTT-GGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAG-TTCAGACATTTGCAT
* * * *
23111811 CCATAAGTGAACTCGGACTCAACGCAACGAGCTCAGATGCCTAGTTACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGA---C-ATTTGCAT
*
23111861 CTC-T---CGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
1 C-CATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
*
23111904 CCATAAGTGAACTCGGACTCACCTCAACGAGTTC
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTC
23111938 GGATGCCCAA
Statistics
Matches: 102, Mismatches: 15, Indels: 20
0.74 0.11 0.15
Matches are distributed among these distances:
42 1 0.01
43 8 0.08
44 1 0.01
45 1 0.01
46 56 0.55
47 27 0.26
49 1 0.01
50 6 0.06
51 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCAGACATTTGCAT
Found at i:23115753 original size:61 final size:61
Alignment explanation
Indices: 23115685--23115802 Score: 202
Period size: 61 Copynumber: 1.9 Consensus size: 61
23115675 ATAATATGTC
23115685 AAATTATGTGATATACTT-GGAAAATGTGAAATACTACCGAGTATCGGTAACGGCATTTGTT
1 AAATTATGTGATATA-TTCGGAAAATGTGAAATACTACCGAGTATCGGTAACGGCATTTGTT
* *
23115746 AAATTATGTGATATATTCGGAAAATGTGAAATATTACCGAGTATCGGTATCGGCATT
1 AAATTATGTGATATATTCGGAAAATGTGAAATACTACCGAGTATCGGTAACGGCATT
23115803 CCTTAGAAGA
Statistics
Matches: 54, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
60 2 0.04
61 52 0.96
ACGTcount: A:0.35, C:0.11, G:0.21, T:0.33
Consensus pattern (61 bp):
AAATTATGTGATATATTCGGAAAATGTGAAATACTACCGAGTATCGGTAACGGCATTTGTT
Found at i:23115956 original size:46 final size:45
Alignment explanation
Indices: 23115902--23116077 Score: 169
Period size: 46 Copynumber: 3.8 Consensus size: 45
23115892 TGGTTGAGCA
23115902 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-G
* * * *
23115948 TCCAAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--GATGTAACTAGG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A-G
* * * *
23115993 CATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATACAAAC
1 --TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
* * *
23116040 ACTCGAACTCATTGAGTTGAGTCCGAGTTCGCTTATGG
1 TC-CGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
23116078 GCTGGTTACA
Statistics
Matches: 105, Mismatches: 17, Indels: 16
0.76 0.12 0.12
Matches are distributed among these distances:
43 6 0.06
45 5 0.05
46 59 0.56
47 27 0.26
48 3 0.03
50 5 0.05
ACGTcount: A:0.24, C:0.20, G:0.26, T:0.30
Consensus pattern (45 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAG
Found at i:23116058 original size:93 final size:93
Alignment explanation
Indices: 23115899--23116070 Score: 265
Period size: 93 Copynumber: 1.8 Consensus size: 93
23115889 GGATGGTTGA
* * ** *
23115899 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCAAACTCGTTGAGT
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACAAAACTCCAAACTCATTGAGT
23115964 TGAGTCCGAGTTCGTGAGATGTAACTAG
66 TGAGTCCGAGTTCGTGAGATGTAACTAG
* *
23115992 GCATCCGAACTCGTTGAGTTGAGTTCGAGTTCACTCATGGATACAAACACT-CGAACTCATTGAG
1 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACAAA-ACTCCAAACTCATTGAG
23116056 TTGAGTCCGAGTTCG
65 TTGAGTCCGAGTTCG
23116071 CTTATGGGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 2
0.89 0.09 0.03
Matches are distributed among these distances:
93 70 0.99
94 1 0.01
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.28
Consensus pattern (93 bp):
GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTCATGGATACAAAACTCCAAACTCATTGAGT
TGAGTCCGAGTTCGTGAGATGTAACTAG
Found at i:23121734 original size:40 final size:40
Alignment explanation
Indices: 23121690--23121953 Score: 292
Period size: 40 Copynumber: 6.7 Consensus size: 40
23121680 GCTCCTCGTT
* *
23121690 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* * **
23121730 CAAATGCCTTCGGGACTTAACCCGGATTTAATAA-TCGTT
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
23121769 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
* *
23121809 CAAATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
23121849 CAAATGCCTTCGGG-CTTAGCCCGGAATTT-GTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGG-ATTTAGTAACTCGCA
* * *
23121888 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
23121929 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23121954 CATCATTCAA
Statistics
Matches: 190, Mismatches: 24, Indels: 20
0.81 0.10 0.09
Matches are distributed among these distances:
38 4 0.02
39 60 0.32
40 111 0.58
41 15 0.08
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:23121788 original size:79 final size:80
Alignment explanation
Indices: 23121684--23121900 Score: 343
Period size: 79 Copynumber: 2.7 Consensus size: 80
23121674 GATATAGCTC
23121684 CTCGTTCAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 CTCGTTCAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
23121749 ACCCGGATTTAATAA
66 ACCCGGATTTAATAA
23121764 -TCGTTCAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
1 CTCGTTCAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
23121828 ACCCGGATTTAATAA
66 ACCCGGATTTAATAA
** * * *
23121843 CTCGCACAAATGCCTTCGGG-CTTAGCCCGGAATT-T-GTATCTCGCACAAATGCCTTCGG
1 CTCGTTCAAATGCCTTCGGGACATAGCCTGG--TTATAGTAACTCGCACAAATGCCTTCGG
23121901 ATCTTAGTCC
Statistics
Matches: 129, Mismatches: 5, Indels: 7
0.91 0.04 0.05
Matches are distributed among these distances:
79 109 0.84
80 18 0.14
81 2 0.02
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CTCGTTCAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTA
ACCCGGATTTAATAA
Found at i:23121892 original size:119 final size:121
Alignment explanation
Indices: 23121690--23121953 Score: 310
Period size: 119 Copynumber: 2.2 Consensus size: 121
23121680 GCTCCTCGTT
* * *
23121690 CAAATGCCTTCGGGACATAGCCTGG-TTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
** * *
23121754 GATTTAATAATCGTTCAAATGCCTTCGGGA-CATAG-CCTGGTTATAGTAAC-TCGCA
66 GATTTAATAATCGCACAAATGCCTTC-GGATCATAGTCC-GGATATAGTAACTTAGCA
* *
23121809 CAAATGCCTTCGGGACTTAACCCGGATT-TAATAACTCGCACAAATGCCTTCGGG-CTTAGCCCG
1 CAAATGCCTTCGGGACTTAGCCCGGATTATAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
* * * * *
23121872 GAATTT-GTATCTCGCACAAATGCCTTCGGATCTTAGTCCGGATATTGTCACTTAGCA
66 G-ATTTAATA-ATCGCACAAATGCCTTCGGATCATAGTCCGGATATAGTAACTTAGCA
23121929 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23121954 CATCATTCAA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
118 14 0.11
119 98 0.79
120 12 0.10
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (121 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTATAATAACTCGCACAAATGCCTTCGGGACTTAACCCG
GATTTAATAATCGCACAAATGCCTTCGGATCATAGTCCGGATATAGTAACTTAGCA
Found at i:23121913 original size:79 final size:80
Alignment explanation
Indices: 23121690--23121952 Score: 324
Period size: 79 Copynumber: 3.3 Consensus size: 80
23121680 GCTCCTCGTT
*
23121690 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
**
23121755 ATTTAATAA-TCGTT
66 ATTTAATAACTCGCA
*
23121769 CAAATGCCTTCGGGACATAGCCTGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
1 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
23121834 ATTTAATAACTCGCA
66 ATTTAATAACTCGCA
* * **
23121849 CAAATGCCTTCGGG-CTTAGCCCGGAATT-T-GTATCTCGCACAAATGCCTTC-GGATCTTAGTC
1 CAAATGCCTTCGGGACATAGCCCGG--TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACC
* * *
23121910 CGGATATT-GTCACTTAGCA
63 CGGAT-TTAATAAC-TCGCA
*
23121929 CAAA-GCCTTCGGGACTTAGCCCGG
1 CAAATGCCTTCGGGACATAGCCCGG
23121953 ACATCATTCA
Statistics
Matches: 167, Mismatches: 10, Indels: 13
0.88 0.05 0.07
Matches are distributed among these distances:
78 3 0.02
79 124 0.74
80 38 0.23
81 2 0.01
ACGTcount: A:0.26, C:0.26, G:0.21, T:0.27
Consensus pattern (80 bp):
CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCACAAATGCCTTCGGGACTTAACCCGG
ATTTAATAACTCGCA
Found at i:23129967 original size:20 final size:20
Alignment explanation
Indices: 23129942--23129982 Score: 82
Period size: 20 Copynumber: 2.0 Consensus size: 20
23129932 GCAGTAAGTG
23129942 TTAGTTTGAAATTGATATGA
1 TTAGTTTGAAATTGATATGA
23129962 TTAGTTTGAAATTGATATGA
1 TTAGTTTGAAATTGATATGA
23129982 T
1 T
23129983 ATCTGTTTTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.34, C:0.00, G:0.20, T:0.46
Consensus pattern (20 bp):
TTAGTTTGAAATTGATATGA
Found at i:23136420 original size:40 final size:40
Alignment explanation
Indices: 23136270--23136421 Score: 177
Period size: 40 Copynumber: 3.8 Consensus size: 40
23136260 CATTTGAATG
*
23136270 ATATCCGGGCTAAGGACCCGAAGGCAATTGTG-TAG-TGATT
1 ATATCCGGGCTAA-GACCCGAAGGCAATTGTGCGAGTTGA-T
* * *
23136310 TTATCCGGGCTAAGACCCGAAGGCATTTGTACGAGTTGAT
1 ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT
*
23136350 ATATCCGGGCTAAGACCCGAAGG-AATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGACCCGAAGGCAA-TTGTGCGAGTTGAT
* *
23136390 ATA-CTCGGGTTAAGACCCGGAGGCAATTGTGC
1 ATATC-CGGGCTAAGACCCGAAGGCAATTGTGC
23136422 TTGTGGTTAT
Statistics
Matches: 97, Mismatches: 10, Indels: 10
0.83 0.09 0.09
Matches are distributed among these distances:
39 18 0.19
40 74 0.76
41 5 0.05
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (40 bp):
ATATCCGGGCTAAGACCCGAAGGCAATTGTGCGAGTTGAT
Found at i:23136433 original size:80 final size:80
Alignment explanation
Indices: 23136270--23136441 Score: 183
Period size: 80 Copynumber: 2.2 Consensus size: 80
23136260 CATTTGAATG
* *
23136270 ATATCCGGGCTAAGGACCCGAAGGCAATTGTGTAGTGATTTTATCCGGGCTAAGACCCGAAGGCA
1 ATATCCGGGCTAAGGACCCGAAGGCAATTGTGTAGCGATTCTATCCGGGCTAAGACCCGAAGGCA
* *
23136335 TTTGTACGAGTTGAT
66 ATTGTACGAGTGGAT
* *
23136350 ATATCCGGGCTAA-GACCCGAAGG-AATT-TGT-GCGAGTTGCTATACTCGGGTTAAGACCCGGA
1 ATATCCGGGCTAAGGACCCGAAGGCAATTGTGTAGCGA-TT-CTAT-C-CGGGCTAAGACCCGAA
* ** *
23136411 GGCAATTGTGCTTGTGGTT
62 GGCAATTGTACGAGTGGAT
23136430 ATATCC-GGCTAA
1 ATATCCGGGCTAA
23136442 ATTCCGAAGA
Statistics
Matches: 78, Mismatches: 10, Indels: 9
0.80 0.10 0.09
Matches are distributed among these distances:
76 3 0.04
77 5 0.06
78 7 0.09
79 17 0.22
80 46 0.59
ACGTcount: A:0.25, C:0.19, G:0.29, T:0.27
Consensus pattern (80 bp):
ATATCCGGGCTAAGGACCCGAAGGCAATTGTGTAGCGATTCTATCCGGGCTAAGACCCGAAGGCA
ATTGTACGAGTGGAT
Found at i:23161215 original size:46 final size:45
Alignment explanation
Indices: 23161114--23161207 Score: 145
Period size: 46 Copynumber: 2.1 Consensus size: 45
23161104 TGTAACCCGC
* *
23161114 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA-ATGCGCAA
*
23161160 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGG-ATGCTCAA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
23161204 CCAT
1 CCAT
23161208 CCTAGTGACA
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
44 9 0.20
46 36 0.80
ACGTcount: A:0.31, C:0.29, G:0.19, T:0.21
Consensus pattern (45 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGAATGCGCAA
Found at i:23161657 original size:30 final size:30
Alignment explanation
Indices: 23161623--23161682 Score: 93
Period size: 30 Copynumber: 2.0 Consensus size: 30
23161613 ATTTAATACG
23161623 AACTTTGGAAAAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
* * *
23161653 AACTTTTGCATAATTACACTTTTGCCCCTA
1 AACTTTGGAAAAATTACACTTTTGCCCCTA
23161683 GGCTCGGGAA
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.37
Consensus pattern (30 bp):
AACTTTGGAAAAATTACACTTTTGCCCCTA
Found at i:23164554 original size:30 final size:30
Alignment explanation
Indices: 23164520--23164580 Score: 86
Period size: 30 Copynumber: 2.0 Consensus size: 30
23164510 TTCCCGAGCC
23164520 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
* * * *
23164550 TAGGGGCAAAATTGTAATTTTTCAAAAGTT
1 TAGGGGCAAAAGTGTAAATATGCAAAAGTT
23164580 T
1 T
23164581 GAGTTAAGGA
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.39, C:0.07, G:0.23, T:0.31
Consensus pattern (30 bp):
TAGGGGCAAAAGTGTAAATATGCAAAAGTT
Found at i:23165062 original size:68 final size:67
Alignment explanation
Indices: 23164990--23165139 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
23164980 CATCATGTGT
* * * *
23164990 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
23165052 ATGTAG
62 ATGTAG
** * *
23165058 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
23165123 AG
66 AG
23165125 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
23165140 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:23165095 original size:64 final size:64
Alignment explanation
Indices: 23165014--23165197 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
23165004 AGACATTATG
* *
23165014 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
23165078 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
23165143 AA
63 AA
* * * *
23165145 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
23165198 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:23169508 original size:68 final size:67
Alignment explanation
Indices: 23169436--23169585 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
23169426 CATCATGTGT
* * * *
23169436 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
23169498 ATGTAG
62 ATGTAG
** * *
23169504 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
23169569 AG
66 AG
23169571 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
23169586 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:23169541 original size:64 final size:64
Alignment explanation
Indices: 23169460--23169643 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
23169450 AGACATTATG
* *
23169460 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
23169524 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
23169589 AA
63 AA
* * * *
23169591 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
23169644 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:23181041 original size:50 final size:48
Alignment explanation
Indices: 23180867--23181274 Score: 248
Period size: 46 Copynumber: 8.6 Consensus size: 48
23180857 GTATAATGCT
* *
23180867 GATGCCATGTCCCAGACATGGTCTTACACTGGTTCATCCATCAT-GT--C
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACAT-ATCGTGCC
* * * * *
23180914 GACGCCATGTCCCAGACATGGTCTTACATTGACT-ATAGAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTG-CTCATACATATCG-TGCC
* *
23180963 GACGCCATGTCCCAGACATGGTCTTACACTAGCTCATACATATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACATAT-CGTGCC
* * *
23181013 GATGCCATGTCCCAGATATGGTCTTACACTG-ACACTTC-TATACGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGCTCA-TACATAT-CGTGCC
* * * * *
23181061 GATGCCATGTCCCAGACATGGTTTTCCA-T--TGACACATCTCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGCTCATACATATCGT-GCC
* * * *
23181107 GATG-CATGTCCCAAACAT-GTCTTACAGTGGCT--TACATCTCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACATATCG-TGCC
* * * * * *
23181153 AAT-ACATGTCCTAGACAT-GTCTTACACTAGTTC-T-CATCTCAATGCC
1 GATGCCATGTCCCAGACATGGTCTTACACT-GCTCATACATATC-GTGCC
* *
23181199 GATGCCATGTCCC-GAACATGGTCTTACACTAGCTCTTATA-AT-GTGGCC
1 GATGCCATGTCCCAG-ACATGGTCTTACACT-GCTCATACATATCGT-GCC
*
23181247 GATG-CATGTCCCTGACAT-GTCTTACACT
1 GATGCCATGTCCCAGACATGGTCTTACACT
23181275 AGCACACAAT
Statistics
Matches: 289, Mismatches: 46, Indels: 53
0.74 0.12 0.14
Matches are distributed among these distances:
44 6 0.02
45 20 0.07
46 73 0.25
47 55 0.19
48 58 0.20
49 37 0.13
50 38 0.13
51 2 0.01
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (48 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGCTCATACATATCGTGCC
Found at i:23181082 original size:48 final size:47
Alignment explanation
Indices: 23180867--23181132 Score: 202
Period size: 48 Copynumber: 5.6 Consensus size: 47
23180857 GTATAATGCT
*** * * * *
23180867 GATGCCATGTCCCAGACATGGTCTTACACTGGTTCATCCATCATGTC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTATCGTGCC
* * *** *
23180914 GACGCCATGTCCCAGACATGGTCTTACATTGACTA-TAGAAATCGAGGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGAC-ACT-TCTATCG-TGCC
* * * *
23180963 GACGCCATGTCCCAGACATGGTCTTACACT-AGCTCATACATATCCGTGCT
1 GATGCCATGTCCCAGACATGGTCTTACACTGA-CAC-TTC-TAT-CGTGCC
*
23181013 GATGCCATGTCCCAGATATGGTCTTACACTGACACTTCTATACGTGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTAT-CGTGCC
* * * *
23181061 GATGCCATGTCCCAGACATGGTTTTCCATTGACACATC--TCGTAGCC
1 GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTATCGT-GCC
*
23181107 GATG-CATGTCCCAAACAT-GTCTTACA
1 GATGCCATGTCCCAGACATGGTCTTACA
23181133 GTGGCTTACA
Statistics
Matches: 176, Mismatches: 33, Indels: 23
0.76 0.14 0.10
Matches are distributed among these distances:
44 6 0.03
45 16 0.09
46 8 0.05
47 29 0.16
48 45 0.26
49 34 0.19
50 35 0.20
51 3 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.27
Consensus pattern (47 bp):
GATGCCATGTCCCAGACATGGTCTTACACTGACACTTCTATCGTGCC
Found at i:23194265 original size:13 final size:13
Alignment explanation
Indices: 23194247--23194274 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
23194237 ACATATTATA
23194247 AATATTTTGTGTT
1 AATATTTTGTGTT
23194260 AATATTTTGTGTT
1 AATATTTTGTGTT
23194273 AA
1 AA
23194275 AAATAATAAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.29, C:0.00, G:0.14, T:0.57
Consensus pattern (13 bp):
AATATTTTGTGTT
Found at i:23195739 original size:40 final size:40
Alignment explanation
Indices: 23195694--23195784 Score: 173
Period size: 40 Copynumber: 2.3 Consensus size: 40
23195684 CTAAGATCCA
23195694 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
*
23195734 AAGGCATTTGTGCTAGTGATTATATCCGGGCTAAGTCCCG
1 AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
23195774 AAGGCATTTGT
1 AAGGCATTTGT
23195785 ATGTGTTAGC
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
40 50 1.00
ACGTcount: A:0.23, C:0.20, G:0.27, T:0.30
Consensus pattern (40 bp):
AAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTCCCG
Found at i:23201436 original size:13 final size:13
Alignment explanation
Indices: 23201418--23201443 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
23201408 ATATTATAAT
23201418 TATTTTATGTTAA
1 TATTTTATGTTAA
23201431 TATTTTATGTTAA
1 TATTTTATGTTAA
23201444 AAATAAAAAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.31, C:0.00, G:0.08, T:0.62
Consensus pattern (13 bp):
TATTTTATGTTAA
Found at i:23202942 original size:39 final size:40
Alignment explanation
Indices: 23202817--23202942 Score: 211
Period size: 40 Copynumber: 3.2 Consensus size: 40
23202807 GGACTAAGAT
23202817 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
23202857 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
1 CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
* *
23202897 CCGAAGGCATTTGTGCGAGTTG-CTATATCC-GGCTAAATC
1 CCGAAGGCATTTGTGCTAG-TGACTATATCCGGGCTAAGTC
23202936 CCGAAGG
1 CCGAAGG
23202943 TACTTGGGTT
Statistics
Matches: 83, Mismatches: 2, Indels: 3
0.94 0.02 0.03
Matches are distributed among these distances:
39 15 0.18
40 66 0.80
41 2 0.02
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGTC
Found at i:23223453 original size:40 final size:40
Alignment explanation
Indices: 23223409--23223670 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
23223399 GCTCCTCGTT
* *
23223409 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
23223449 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23223489 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23223528 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
23223567 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
23223606 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
23223647 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23223671 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:23235311 original size:84 final size:86
Alignment explanation
Indices: 23235130--23235327 Score: 276
Period size: 84 Copynumber: 2.3 Consensus size: 86
23235120 AGGATTTTTT
* *
23235130 ATATGTGATTACGTGTAAGACCGTGTCTGGGACAGTGGCATCGATATGTGATTACGTGTAAGACC
1 ATATGTGATTACGTGTAAGACCATGTCTGGGACAGTGACATCGATATGTGATTACGTGTAAGACC
23235195 ACGTCTCAGACAGTGGCATCG
66 ACGTCTCAGACAGTGGCATCG
* *
23235216 ATATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGACATTG-TATTTGATT-CGTGTAAGAC
1 ATATGTGATTACGTGTAAGACCATGTCTGGGACAGT-GACATCGATATGTGATTACGTGTAAGAC
** ** *
23235278 CTTGTCTTGGATAGTGGCATCG
65 CACGTCTCAGACAGTGGCATCG
*
23235300 ATATGTGATTACATGTAAGACCATGTCT
1 ATATGTGATTACGTGTAAGACCATGTCT
23235328 TGGATGTTGG
Statistics
Matches: 101, Mismatches: 10, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
84 54 0.53
85 9 0.09
86 38 0.38
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (86 bp):
ATATGTGATTACGTGTAAGACCATGTCTGGGACAGTGACATCGATATGTGATTACGTGTAAGACC
ACGTCTCAGACAGTGGCATCG
Found at i:23235332 original size:43 final size:43
Alignment explanation
Indices: 23235130--23235327 Score: 267
Period size: 43 Copynumber: 4.7 Consensus size: 43
23235120 AGGATTTTTT
*
23235130 ATATGTGATTACGTGTAAGACCGTGTCTGGGACAGTGGCATCG
1 ATATGTGATTACGTGTAAGACCATGTCTGGGACAGTGGCATCG
* **
23235173 ATATGTGATTACGTGTAAGACCACGTCTCAGACAGTGGCATCG
1 ATATGTGATTACGTGTAAGACCATGTCTGGGACAGTGGCATCG
* *
23235216 ATATGTGATTACGTGTAAGACCATGTCTGGGACA-TCGACATTG
1 ATATGTGATTACGTGTAAGACCATGTCTGGGACAGT-GGCATCG
* * * *
23235259 -TATTTGATT-CGTGTAAGACCTTGTCTTGGATAGTGGCATCG
1 ATATGTGATTACGTGTAAGACCATGTCTGGGACAGTGGCATCG
*
23235300 ATATGTGATTACATGTAAGACCATGTCT
1 ATATGTGATTACGTGTAAGACCATGTCT
23235328 TGGATGTTGG
Statistics
Matches: 133, Mismatches: 18, Indels: 8
0.84 0.11 0.05
Matches are distributed among these distances:
41 25 0.19
42 18 0.14
43 90 0.68
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
ATATGTGATTACGTGTAAGACCATGTCTGGGACAGTGGCATCG
Found at i:23235534 original size:19 final size:18
Alignment explanation
Indices: 23235510--23235553 Score: 52
Period size: 19 Copynumber: 2.3 Consensus size: 18
23235500 GATACAAATT
23235510 ATATATGATGCAAATGAAA
1 ATATATG-TGCAAATGAAA
* *
23235529 ATATATGTGTATATGAAA
1 ATATATGTGCAAATGAAA
23235547 AGTATAT
1 A-TATAT
23235554 TCGGCCAAAT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.45
19 12 0.55
ACGTcount: A:0.48, C:0.02, G:0.16, T:0.34
Consensus pattern (18 bp):
ATATATGTGCAAATGAAA
Found at i:23238871 original size:24 final size:24
Alignment explanation
Indices: 23238842--23238903 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
23238832 TCGAAGAAGT
** *
23238842 TGATAGTAATAGTGTGAGCTATGA
1 TGATAGTAATAGTGCAAACTATGA
23238866 TGATAGTAATAGTGCAAACTATGA
1 TGATAGTAATAGTGCAAACTATGA
*
23238890 TGATAGTGATAGTG
1 TGATAGTAATAGTG
23238904 AACTTTGTGA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
24 34 1.00
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.32
Consensus pattern (24 bp):
TGATAGTAATAGTGCAAACTATGA
Found at i:23250138 original size:40 final size:40
Alignment explanation
Indices: 23250094--23250357 Score: 360
Period size: 40 Copynumber: 6.7 Consensus size: 40
23250084 GCTCCTCGTT
* *
23250094 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAATTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATT-TAGTAACTCGCA
*
23250134 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
23250174 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
*
23250214 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* *
23250254 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
* * *
23250293 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGAT-TTAGTAAC-TCGCA
23250334 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23250358 CATCATTCAA
Statistics
Matches: 206, Mismatches: 12, Indels: 13
0.89 0.05 0.06
Matches are distributed among these distances:
38 2 0.01
39 49 0.24
40 146 0.71
41 9 0.04
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.25
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATTTAGTAACTCGCA
Found at i:23259296 original size:79 final size:81
Alignment explanation
Indices: 23259194--23259377 Score: 222
Period size: 79 Copynumber: 2.3 Consensus size: 81
23259184 GCTCCTCGTT
* *
23259194 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCACAAATGCCTTCGGGA-CTTAACC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCACAAATGCCTTC-GGATCTTAACC
*
23259256 CGGAT-TTAGTAAC-TCGCA
63 CGGATATT-GTAACTTAGCA
**
23259274 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
*
23259338 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
23259354 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23259378 CATCATTCAA
Statistics
Matches: 92, Mismatches: 6, Indels: 13
0.83 0.05 0.12
Matches are distributed among these distances:
78 14 0.15
79 56 0.61
80 22 0.24
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:23259311 original size:39 final size:41
Alignment explanation
Indices: 23259194--23259377 Score: 199
Period size: 40 Copynumber: 4.6 Consensus size: 41
23259184 GCTCCTCGTT
* *
23259194 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAATCTCGCA
* *
23259234 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAA-CTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
23259274 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGT-ATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
* * *
23259313 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGTAATC-TCGCA
23259354 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
23259378 CATCATTCAA
Statistics
Matches: 128, Mismatches: 7, Indels: 19
0.83 0.05 0.12
Matches are distributed among these distances:
38 3 0.02
39 48 0.38
40 66 0.52
41 11 0.09
ACGTcount: A:0.25, C:0.27, G:0.22, T:0.26
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAATCTCGCA
Found at i:23266939 original size:28 final size:29
Alignment explanation
Indices: 23266898--23266958 Score: 115
Period size: 28 Copynumber: 2.1 Consensus size: 29
23266888 ATGCTGTAAA
23266898 TGGGCCTAAGACCCATTATTTGGCCTAAG
1 TGGGCCTAAGACCCATTATTTGGCCTAAG
23266927 TGGG-CTAAGACCCATTATTTGGCCTAAG
1 TGGGCCTAAGACCCATTATTTGGCCTAAG
23266955 TGGG
1 TGGG
23266959 ACCACACGCT
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
28 28 0.88
29 4 0.12
ACGTcount: A:0.23, C:0.21, G:0.28, T:0.28
Consensus pattern (29 bp):
TGGGCCTAAGACCCATTATTTGGCCTAAG
Found at i:23278656 original size:12 final size:12
Alignment explanation
Indices: 23278639--23278668 Score: 60
Period size: 12 Copynumber: 2.5 Consensus size: 12
23278629 AGCCACATGC
23278639 CCGTGTGCTAGG
1 CCGTGTGCTAGG
23278651 CCGTGTGCTAGG
1 CCGTGTGCTAGG
23278663 CCGTGT
1 CCGTGT
23278669 AACAGCCTAA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 18 1.00
ACGTcount: A:0.07, C:0.27, G:0.40, T:0.27
Consensus pattern (12 bp):
CCGTGTGCTAGG
Found at i:23282226 original size:7 final size:7
Alignment explanation
Indices: 23282206--23282253 Score: 78
Period size: 7 Copynumber: 6.7 Consensus size: 7
23282196 ATGAAAAATA
23282206 ATATATT
1 ATATATT
23282213 AATATATT
1 -ATATATT
23282221 ATATATT
1 ATATATT
*
23282228 ATATACT
1 ATATATT
23282235 ATATATT
1 ATATATT
23282242 ATATATT
1 ATATATT
23282249 ATATA
1 ATATA
23282254 CTAATTGTTA
Statistics
Matches: 38, Mismatches: 2, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
7 31 0.82
8 7 0.18
ACGTcount: A:0.46, C:0.02, G:0.00, T:0.52
Consensus pattern (7 bp):
ATATATT
Found at i:23282264 original size:21 final size:21
Alignment explanation
Indices: 23282214--23282256 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
23282204 TAATATATTA
23282214 ATATATTATATATTATATACT
1 ATATATTATATATTATATACT
23282235 ATATATTATATATTATATACT
1 ATATATTATATATTATATACT
23282256 A
1 A
23282257 ATTGTTATTA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.44, C:0.05, G:0.00, T:0.51
Consensus pattern (21 bp):
ATATATTATATATTATATACT
Found at i:23285147 original size:43 final size:43
Alignment explanation
Indices: 23285100--23285226 Score: 150
Period size: 42 Copynumber: 3.0 Consensus size: 43
23285090 TTCCAAACGT
* *
23285100 GGTCTTACATGTAATCAAATATTGATGCCACTGTCCTAGACAA
1 GGTCTTACACGTAATCAAATATTGATGCCAATGTCCTAGACAA
* *
23285143 GGTCTTACACGAAATCAAATA-TGATGCCAATGTCCTAGACAT
1 GGTCTTACACGTAATCAAATATTGATGCCAATGTCCTAGACAA
* * * *
23285185 TGTCTTACACGTAAATCACAA-ATCGATGCCAACGTCCCAGAC
1 GGTCTTACACGT-AATCA-AATATTGATGCCAATGTCCTAGAC
23285227 GTGGCCTTAC
Statistics
Matches: 72, Mismatches: 9, Indels: 5
0.84 0.10 0.06
Matches are distributed among these distances:
42 29 0.40
43 25 0.35
44 18 0.25
ACGTcount: A:0.34, C:0.24, G:0.16, T:0.26
Consensus pattern (43 bp):
GGTCTTACACGTAATCAAATATTGATGCCAATGTCCTAGACAA
Found at i:23288434 original size:42 final size:44
Alignment explanation
Indices: 23288363--23288474 Score: 131
Period size: 42 Copynumber: 2.6 Consensus size: 44
23288353 TGTCACATGT
* * * * *
23288363 AATCAAATATCGATACCACTGTCCTAGACAGGGTCTTACACG-A
1 AATCAAATATCGATGCCAATGTCCCAGACAGGATCTTACAAGTA
*
23288406 AATCAAATA-CGATGCCAATGTCCCAGACATGATCTTACAAGTA
1 AATCAAATATCGATGCCAATGTCCCAGACAGGATCTTACAAGTA
*
23288449 AATCACAA-ATCGATGCCAACGTCCCA
1 AATCA-AATATCGATGCCAATGTCCCA
23288475 AACGTGACCT
Statistics
Matches: 59, Mismatches: 7, Indels: 5
0.83 0.10 0.07
Matches are distributed among these distances:
42 26 0.44
43 16 0.27
44 17 0.29
ACGTcount: A:0.38, C:0.27, G:0.14, T:0.21
Consensus pattern (44 bp):
AATCAAATATCGATGCCAATGTCCCAGACAGGATCTTACAAGTA
Found at i:23289241 original size:32 final size:32
Alignment explanation
Indices: 23289205--23289269 Score: 121
Period size: 32 Copynumber: 2.0 Consensus size: 32
23289195 CTAAGCAACG
*
23289205 ATTACAGAAACGTAGAAATTATCAAAAACCGA
1 ATTACAAAAACGTAGAAATTATCAAAAACCGA
23289237 ATTACAAAAACGTAGAAATTATCAAAAACCGA
1 ATTACAAAAACGTAGAAATTATCAAAAACCGA
23289269 A
1 A
23289270 CAAAATACAT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 32 1.00
ACGTcount: A:0.55, C:0.15, G:0.11, T:0.18
Consensus pattern (32 bp):
ATTACAAAAACGTAGAAATTATCAAAAACCGA
Found at i:23289263 original size:17 final size:18
Alignment explanation
Indices: 23289212--23289265 Score: 71
Period size: 18 Copynumber: 3.2 Consensus size: 18
23289202 ACGATTACAG
23289212 AAACGTAGAAATTATCAA
1 AAACGTAGAAATTATCAA
*
23289230 AAAC--CG-AATTA-CAA
1 AAACGTAGAAATTATCAA
23289244 AAACGTAGAAATTATCAA
1 AAACGTAGAAATTATCAA
23289262 AAAC
1 AAAC
23289266 CGAACAAAAT
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
14 7 0.23
15 5 0.17
16 2 0.07
17 5 0.17
18 11 0.37
ACGTcount: A:0.57, C:0.15, G:0.09, T:0.19
Consensus pattern (18 bp):
AAACGTAGAAATTATCAA
Found at i:23292209 original size:41 final size:41
Alignment explanation
Indices: 23292152--23292269 Score: 166
Period size: 41 Copynumber: 2.9 Consensus size: 41
23292142 GCCACTGGTA
* * *
23292152 GATCCACAGTCATCAAGCAACCATGCGATCCTTAATC-GATG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAG-TG
*
23292193 GATCCACGGTTGTCAAGCAACCATGCGATCCTCAATCAGTG
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAGTG
* *
23292234 GATCCACGGTCGTTAAGCAATCATGCGATCCTCAAT
1 GATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
23292270 TTCTTCCTCC
Statistics
Matches: 69, Mismatches: 7, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
41 68 0.99
42 1 0.01
ACGTcount: A:0.29, C:0.29, G:0.19, T:0.23
Consensus pattern (41 bp):
GATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCAGTG
Found at i:23292559 original size:27 final size:26
Alignment explanation
Indices: 23292529--23292824 Score: 173
Period size: 27 Copynumber: 10.9 Consensus size: 26
23292519 GGTAAATCTA
* *
23292529 CAAACCAAGGATATTTCGATAATTTTG
1 CAAATCAAGGGTATTTCG-TAATTTTG
* * *
23292556 CAAACCAATGGTATTTTTTGTAATTTTTG
1 CAAATCAAGGGTA--TTTCGTAA-TTTTG
*
23292585 -AAAGTCAAGTGTATTTCTGTAATTTTG
1 CAAA-TCAAGGGTATTTC-GTAATTTTG
* * * *
23292612 TAAATCAGGGGTATTTTTGTAATTTTC
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* *
23292639 CAAATCAATGGTATTTCGGTAATTTTC
1 CAAATCAAGGGTATTTC-GTAATTTTG
* *
23292666 CAAATCAAGGGTATTTTGGTAATTTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
* * *
23292693 AAAATTAAGGGTATTTCGATAATTTTA
1 CAAATCAAGGGTATTTCG-TAATTTTG
* *
23292720 CAAATCGAGGGTATTTCGATAATTTTA
1 CAAATCAAGGGTATTTCG-TAATTTTG
* ** * * *
23292747 TAGGTCGAGCGTATTTCGATAATTTTT
1 CAAATCAAGGGTATTTCG-TAATTTTG
* ** *
23292774 CAAGTCAAGGGTATTTTTTTAATTTTA
1 CAAATCAAGGGTA-TTTCGTAATTTTG
*
23292801 CAAA-CCAGGGATATTTCAGTAATT
1 CAAATCAAGGG-TATTTC-GTAATT
23292825 CTACCCTACA
Statistics
Matches: 216, Mismatches: 40, Indels: 26
0.77 0.14 0.09
Matches are distributed among these distances:
26 15 0.07
27 164 0.76
28 22 0.10
29 15 0.07
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (26 bp):
CAAATCAAGGGTATTTCGTAATTTTG
Found at i:23292705 original size:81 final size:82
Alignment explanation
Indices: 23292534--23292745 Score: 223
Period size: 81 Copynumber: 2.6 Consensus size: 82
23292524 ATCTACAAAC
* * * ** ** *
23292534 CAAGGATATTTCGATAATTTTGCAAACCAATGGTATTTTTTGTAATTTTTGAAAGTCAAGTGTAT
1 CAAGGGTATTTCGATAATTTTACAAATCAATGGTA-TTTCGGTAATTTTCCAAAGTCAAGGGTAT
**
23292599 TTCTGTAATTTTGTAAAT
65 TTCTGTAATTTTAAAAAT
* * *
23292617 CAGGGGTATTTTTG-TAATTTTCCAAATCAATGGTATTTCGGTAATTTTCCAAA-TCAAGGGTAT
1 CAAGGGTA-TTTCGATAATTTTACAAATCAATGGTATTTCGGTAATTTTCCAAAGTCAAGGGTAT
23292680 TT-TGGTAATTTTAAAAAT
65 TTCT-GTAATTTTAAAAAT
* * * *
23292698 TAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTT
1 CAAGGGTATTTCGATAATTTTACAAATCAATGGTATTTCGGTAATTTT
23292746 ATAGGTCGAG
Statistics
Matches: 107, Mismatches: 19, Indels: 8
0.80 0.14 0.06
Matches are distributed among these distances:
80 5 0.05
81 59 0.55
82 14 0.13
83 25 0.23
84 4 0.04
ACGTcount: A:0.31, C:0.09, G:0.17, T:0.43
Consensus pattern (82 bp):
CAAGGGTATTTCGATAATTTTACAAATCAATGGTATTTCGGTAATTTTCCAAAGTCAAGGGTATT
TCTGTAATTTTAAAAAT
Found at i:23292761 original size:81 final size:81
Alignment explanation
Indices: 23292534--23292817 Score: 198
Period size: 81 Copynumber: 3.5 Consensus size: 81
23292524 ATCTACAAAC
* * * * * ** *
23292534 CAAGGATATTTCGATAATTTTGCAAACCAATGGTATTTTTTG-TAATTTTTGAAAGTCAAGTGTA
1 CAAGGGTATTTCGATAATTTTACAAATCAAGGGTA--TTTCGATAATTTTACAAA-TCAAGCGTA
**
23292598 TTTCTG-TAATTTTGTAAAT
63 TTTC-GATAATTTTAAAAAT
* * * * * * *
23292617 CAGGGGTATTTTTG-TAATTTTCCAAATCAATGGTATTTCGGTAATTTTCCAAATCAAGGGTATT
1 CAAGGGTA-TTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGCGTATT
* *
23292681 TTGGTAATTTTAAAAAT
65 TCGATAATTTTAAAAAT
* * * ** *
23292698 TAAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTCGATAATTTTATAGGTCGAGCGTATTT
1 CAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGCGTATTT
** *
23292763 CGATAATTTTTCAAGT
66 CGATAATTTTAAAAAT
*** *
23292779 CAAGGGTATTTTTTTAATTTTACAAA-CCAGGGATATTTC
1 CAAGGGTATTTCGATAATTTTACAAATCAAGGG-TATTTC
23292818 AGTAATTCTA
Statistics
Matches: 161, Mismatches: 35, Indels: 12
0.77 0.17 0.06
Matches are distributed among these distances:
80 10 0.06
81 112 0.70
82 10 0.06
83 25 0.16
84 4 0.02
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (81 bp):
CAAGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCGATAATTTTACAAATCAAGCGTATTT
CGATAATTTTAAAAAT
Found at i:23292824 original size:54 final size:54
Alignment explanation
Indices: 23292527--23292817 Score: 257
Period size: 54 Copynumber: 5.4 Consensus size: 54
23292517 ATGGTAAATC
* * * * *
23292527 TACAAACCAAGGATATTTCGATAATTTTGCAAACCAATGGTATTTTTTGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTA-TTTTTGTAATTT
** * *
23292582 TTGAAAGTCAAGTGTATTTCTG-TAATTTTGT-AAATCAGGGGTATTTTTGTAATTT
1 TACAAA-TCAAGGGTATTTC-GATAATTTT-TCAAATCAAGGGTATTTTTGTAATTT
* * * * *
23292637 TCCAAATCAATGGTATTTCGGTAATTTTCCAAATCAAGGGTATTTTGGTAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTGTAATTT
* * * * *
23292691 TAAAAATTAAGGGTATTTCGATAATTTTACAAATCGAGGGTA-TTTCGATAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTG-TAATTT
* ** * * * *
23292745 TATAGGTCGAGCGTATTTCGATAATTTTTCAAGTCAAGGGTATTTTTTTAATTT
1 TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTGTAATTT
*
23292799 TACAAA-CCAGGGATATTTC
1 TACAAATCAAGGG-TATTTC
23292818 AGTAATTCTA
Statistics
Matches: 188, Mismatches: 40, Indels: 17
0.77 0.16 0.07
Matches are distributed among these distances:
53 9 0.05
54 129 0.69
55 23 0.12
56 26 0.14
57 1 0.01
ACGTcount: A:0.31, C:0.10, G:0.17, T:0.42
Consensus pattern (54 bp):
TACAAATCAAGGGTATTTCGATAATTTTTCAAATCAAGGGTATTTTTGTAATTT
Found at i:23292836 original size:27 final size:27
Alignment explanation
Indices: 23292806--23292935 Score: 116
Period size: 27 Copynumber: 5.1 Consensus size: 27
23292796 TTTTACAAAC
*
23292806 CAGGGATATTTCAGTAATTCTACCCTA
1 CAGGGACATTTCAGTAATTCTACCCTA
*
23292833 CAGGGGCATTTCAGTAATTCTA---T-
1 CAGGGACATTTCAGTAATTCTACCCTA
*
23292856 ----GATATTTCAGTAATTCTACCCTA
1 CAGGGACATTTCAGTAATTCTACCCTA
* *
23292879 CAGGGGCATTTCAGTAATTCTATCCTA
1 CAGGGACATTTCAGTAATTCTACCCTA
* * *
23292906 CA-AGAGCATTTCAGTAATACTAGCCTA
1 CAGGGA-CATTTCAGTAATTCTACCCTA
23292933 CAG
1 CAG
23292936 ATATGAGATT
Statistics
Matches: 82, Mismatches: 11, Indels: 19
0.73 0.10 0.17
Matches are distributed among these distances:
19 16 0.20
22 1 0.01
24 1 0.01
26 1 0.01
27 63 0.77
ACGTcount: A:0.30, C:0.22, G:0.16, T:0.32
Consensus pattern (27 bp):
CAGGGACATTTCAGTAATTCTACCCTA
Found at i:23292877 original size:46 final size:46
Alignment explanation
Indices: 23292810--23292901 Score: 184
Period size: 46 Copynumber: 2.0 Consensus size: 46
23292800 ACAAACCAGG
23292810 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
1 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
23292856 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
1 GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
23292902 CCTACAAGAG
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 46 1.00
ACGTcount: A:0.28, C:0.20, G:0.15, T:0.37
Consensus pattern (46 bp):
GATATTTCAGTAATTCTACCCTACAGGGGCATTTCAGTAATTCTAT
Found at i:23295957 original size:41 final size:41
Alignment explanation
Indices: 23295897--23296017 Score: 179
Period size: 41 Copynumber: 3.0 Consensus size: 41
23295887 AAAGCCACTA
*
23295897 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTTAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
* * *
23295938 GTGGATCCACGATCATCAAGCAACCATGCGAGCCTCAATCG
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
* * *
23295979 GTGGATCTACGGTCGTCAAGAAACCATGCAATCCTCAAT
1 GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAAT
23296018 TTCTTCCTCC
Statistics
Matches: 70, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.28, C:0.29, G:0.22, T:0.21
Consensus pattern (41 bp):
GTGGATCCACGGTCGTCAAGCAACCATGCGATCCTCAATCG
Found at i:23296307 original size:27 final size:27
Alignment explanation
Indices: 23296255--23296571 Score: 305
Period size: 27 Copynumber: 11.7 Consensus size: 27
23296245 TTTCACCCTA
* * * * *
23296255 CAAGGGTGTATTGGTAAATCTACAAAC
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
23296282 CAAGGGTATTTTGGTAATTTTGCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * **
23296309 CAATGGTATTTTTGTAATTTTTGAAAGT
1 CAAGGGTATTTTGGTAATTTTACAAA-T
* **
23296337 CAAGGGTATTTCT-ATAATTTTGTAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* *
23296364 CAGGGGTATTTCT-GTAATTTTCCAAAT
1 CAAGGGTATTT-TGGTAATTTTACAAAT
* *** *
23296391 CAATGGTATTTCAATAATTTTCCAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
23296418 CAAGGGTATTTTGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
*
23296445 CAAGGGTATTTCGGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
23296472 CGAGGGTATTTTTGTAATTTTACAAAT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* **
23296499 CAAGGGTATTTCGGTAATTTTACAGGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* * * *
23296526 CGAGGGTATTTCGGTAATTTTTCAAGT
1 CAAGGGTATTTTGGTAATTTTACAAAT
* *
23296553 TAAGGGTATTTTAGTAATT
1 CAAGGGTATTTTGGTAATT
23296572 CTACCCTACA
Statistics
Matches: 244, Mismatches: 43, Indels: 6
0.83 0.15 0.02
Matches are distributed among these distances:
27 222 0.91
28 21 0.09
29 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (27 bp):
CAAGGGTATTTTGGTAATTTTACAAAT
Found at i:23296456 original size:81 final size:81
Alignment explanation
Indices: 23296255--23296571 Score: 339
Period size: 81 Copynumber: 3.9 Consensus size: 81
23296245 TTTCACCCTA
* * * * * * *
23296255 CAAGGGTGTATTGGTAAATCTACAAACCAAGGGTATTTTGGTAATTTTGCAAATCAATGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
**
23296320 TTGTAATTTTTGAAAGT
66 TTGTAATTTTACAAA-T
* ** * * *
23296337 CAAGGGTATTTCT-ATAATTTTGTAAATCAGGGGTATTTCTGTAATTTTCCAAATCAATGGTATT
1 CAAGGGTATTT-TGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATT
*** *
23296401 TCAATAATTTTCCAAAT
65 TTTGTAATTTTACAAAT
* *
23296418 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCGAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
23296483 TTGTAATTTTACAAAT
66 TTGTAATTTTACAAAT
* ** * * * * *
23296499 CAAGGGTATTTCGGTAATTTTACAGGTCGAGGGTATTTCGGTAATTTTTCAAGTTAAGGGTATTT
1 CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
*
23296564 TAGTAATT
66 TTGTAATT
23296572 CTACCCTACA
Statistics
Matches: 195, Mismatches: 38, Indels: 5
0.82 0.16 0.02
Matches are distributed among these distances:
80 1 0.01
81 132 0.68
82 61 0.31
83 1 0.01
ACGTcount: A:0.31, C:0.09, G:0.19, T:0.41
Consensus pattern (81 bp):
CAAGGGTATTTTGGTAATTTTACAAATCAAGGGTATTTCGGTAATTTTACAAATCAATGGTATTT
TTGTAATTTTACAAAT
Found at i:23296590 original size:27 final size:27
Alignment explanation
Indices: 23296554--23296636 Score: 96
Period size: 27 Copynumber: 3.1 Consensus size: 27
23296544 TTTTCAAGTT
*
23296554 AAGGGTATTTTAGTAATTCTACCCTAC
1 AAGGGCATTTTAGTAATTCTACCCTAC
*
23296581 -AGAGGCATTTTAGTAATTCTATCCTAC
1 AAG-GGCATTTTAGTAATTCTACCCTAC
* * * *
23296608 AAGGGCATTTCAGTACTGCTAGCCTAC
1 AAGGGCATTTTAGTAATTCTACCCTAC
23296635 AA
1 AA
23296637 ATATGAGATT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
26 2 0.04
27 44 0.92
28 2 0.04
ACGTcount: A:0.30, C:0.20, G:0.17, T:0.33
Consensus pattern (27 bp):
AAGGGCATTTTAGTAATTCTACCCTAC
Found at i:23299023 original size:43 final size:43
Alignment explanation
Indices: 23298867--23299023 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
23298857 TGTGTTTTTG
*
23298867 TGTAAGACCACGTCTGGGACGTTGGCATCGACT-TATGATTTACA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGA-TATTTGA-TTACA
** * * *
23298911 TGTAAGATGATGTCTGGGACGTTGGCATCG-TACTTGATTTCA
1 TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
* *
23298953 TGTAAGACC-CTGTCTGGGTCAG-AGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGAC-GTTGGCATCGATATTTGATTACA
*
23298996 TGTAAGACCACGTCTGGGACGTCGGCAT
1 TGTAAGACCACGTCTGGGACGTTGGCAT
23299024 TGTATGAGCT
Statistics
Matches: 92, Mismatches: 15, Indels: 13
0.77 0.12 0.11
Matches are distributed among these distances:
42 28 0.30
43 36 0.39
44 28 0.30
ACGTcount: A:0.24, C:0.19, G:0.27, T:0.30
Consensus pattern (43 bp):
TGTAAGACCACGTCTGGGACGTTGGCATCGATATTTGATTACA
Found at i:23302487 original size:47 final size:47
Alignment explanation
Indices: 23302418--23302511 Score: 188
Period size: 47 Copynumber: 2.0 Consensus size: 47
23302408 CCAGAATTAC
23302418 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
1 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
23302465 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
1 CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
23302512 ACTCTGATTT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
47 47 1.00
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.32
Consensus pattern (47 bp):
CTCCGATCCGAGAAGTTGAATTTTGTGTTGAGTTAGTACCGGAAACT
Found at i:23308795 original size:41 final size:42
Alignment explanation
Indices: 23308718--23308804 Score: 124
Period size: 41 Copynumber: 2.1 Consensus size: 42
23308708 ATCGGGCCGT
*
23308718 TCAACAAGCTCGGATGCCATATATATCACGAACTTGGACCAC
1 TCAACAAGCTCGGATGCCATATATATCACAAACTTGGACCAC
* *
23308760 TCAACAAGTTCGGAT-CC-TCTCATATCACAAACTTGGACCAC
1 TCAACAAGCTCGGATGCCATAT-ATATCACAAACTTGGACCAC
23308801 TCAA
1 TCAA
23308805 TGAGCTCGAA
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
40 2 0.05
41 25 0.61
42 14 0.34
ACGTcount: A:0.33, C:0.30, G:0.14, T:0.23
Consensus pattern (42 bp):
TCAACAAGCTCGGATGCCATATATATCACAAACTTGGACCAC
Found at i:23311515 original size:46 final size:47
Alignment explanation
Indices: 23311428--23311530 Score: 129
Period size: 46 Copynumber: 2.2 Consensus size: 47
23311418 TACATGAATT
*
23311428 ATTCCTGTCTCCAATGCCATATATATATAATATGTGCTTACGTGGCTC
1 ATTCCTGTCTCCAAAGCCA-ATATATATAATATGTGCTTACGTGGCTC
* * *
23311476 ATTCTTGTCTCCAAAGCC-ATATATCTGATATG-GACTTACGTGGCTC
1 ATTCCTGTCTCCAAAGCCAATATATATAATATGTG-CTTACGTGGCTC
*
23311522 ATTTCTGTC
1 ATTCCTGTC
23311531 CTGTCCTGTC
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
45 1 0.02
46 31 0.65
48 16 0.33
ACGTcount: A:0.23, C:0.23, G:0.16, T:0.38
Consensus pattern (47 bp):
ATTCCTGTCTCCAAAGCCAATATATATAATATGTGCTTACGTGGCTC
Found at i:23315729 original size:71 final size:71
Alignment explanation
Indices: 23315608--23315742 Score: 216
Period size: 71 Copynumber: 1.9 Consensus size: 71
23315598 GTTAGACAAC
* ** *
23315608 TTGTGCTACTCGGTTTTAAGTGAAAACGAGTAAAAGGGCTTAATCGGTAAAAATACCTAATAGTT
1 TTGTACTACTCGGTTTTAAGCAAAAACGAGTAAAAGGACTTAATCGGTAAAAATACCTAATAGTT
23315673 ATAGAG
66 ATAGAG
* *
23315679 TTGTACTACTCGGTTTTAAGCAAAAACGAGTAAAATGACTTAATCTGTAAAAATACCTAATAGT
1 TTGTACTACTCGGTTTTAAGCAAAAACGAGTAAAAGGACTTAATCGGTAAAAATACCTAATAGT
23315743 CATAAGTACA
Statistics
Matches: 58, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
71 58 1.00
ACGTcount: A:0.39, C:0.13, G:0.19, T:0.30
Consensus pattern (71 bp):
TTGTACTACTCGGTTTTAAGCAAAAACGAGTAAAAGGACTTAATCGGTAAAAATACCTAATAGTT
ATAGAG
Found at i:23316325 original size:46 final size:48
Alignment explanation
Indices: 23316243--23316362 Score: 111
Period size: 48 Copynumber: 2.5 Consensus size: 48
23316233 GACAGGACAG
* * * *
23316243 GACAGAAATGAGCCATGTAAGTCCATA-T-CAGTTATATCGCTTTGGA
1 GACAGGAATGATCCATGTAAGCCCATATTACAGTTATATCGCATTGGA
* * *
23316289 GACAGGAATGATCCATGTAAGCCCGTATTATA-TATATATGGCATTGGA
1 GACAGGAATGATCCATGTAAGCCCATATTACAGT-TATATCGCATTGGA
* * * *
23316337 GACAAGAATAATTCATGTAAGTCCAT
1 GACAGGAATGATCCATGTAAGCCCAT
23316363 GTCGAAGACA
Statistics
Matches: 59, Mismatches: 12, Indels: 4
0.79 0.16 0.05
Matches are distributed among these distances:
46 23 0.39
47 2 0.03
48 34 0.58
ACGTcount: A:0.35, C:0.16, G:0.21, T:0.28
Consensus pattern (48 bp):
GACAGGAATGATCCATGTAAGCCCATATTACAGTTATATCGCATTGGA
Found at i:23319855 original size:30 final size:31
Alignment explanation
Indices: 23319821--23319915 Score: 97
Period size: 30 Copynumber: 3.2 Consensus size: 31
23319811 CTCACTCCTG
*
23319821 GCTC-ACTTTCAACTCACGAGCTAAACCTTA
1 GCTCAACTTTCAGCTCACGAGCTAAACCTTA
* * * * * *
23319851 GCTCAAC-TTCAGCTTAGGAGTTTAGCCTCA
1 GCTCAACTTTCAGCTCACGAGCTAAACCTTA
*
23319881 GCTCAACTTT-AGCTCACGAGCTAAAGCTTA
1 GCTCAACTTTCAGCTCACGAGCTAAACCTTA
23319911 GCTCA
1 GCTCA
23319916 TTTTAGTTTA
Statistics
Matches: 49, Mismatches: 14, Indels: 4
0.73 0.21 0.06
Matches are distributed among these distances:
30 45 0.92
31 4 0.08
ACGTcount: A:0.27, C:0.29, G:0.16, T:0.27
Consensus pattern (31 bp):
GCTCAACTTTCAGCTCACGAGCTAAACCTTA
Found at i:23328294 original size:95 final size:96
Alignment explanation
Indices: 23328126--23328449 Score: 323
Period size: 96 Copynumber: 3.4 Consensus size: 96
23328116 TGATATGTGT
* * * * *
23328126 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCA-CGGCATGAGAGCCAGTGTAAGACCAT
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCG-GCATTGACATGAGAGCTAGTGTAAGACCAT
* * *****
23328190 GTTTGGAACATGACATTAG-CGATGTTGTGAGA
65 GTCTGGAACATGACA-TAGACCACAACATGAGA
* * *
23328222 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG-GCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
* *
23328286 TCTGGAACATGGCATCGACCACAACATGAGA
66 TCTGGAACATGACATAGACCACAACATGAGA
* * * * *
23328317 GCCAATGTAAGACCATGTCTGGCATATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGACCATG
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
* * * * *
23328382 TCTGGGACATGGCATCGGCCTCAACATGTA-A
66 TCTGGAACATGACATAGACCACAACATG-AGA
* * *
23328413 GCCAGTGTAAGACCATGTTTGGAACATGTCATCGGCA
1 GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCA
23328450 ATTCACCTTT
Statistics
Matches: 192, Mismatches: 32, Indels: 8
0.83 0.14 0.03
Matches are distributed among these distances:
94 2 0.01
95 77 0.40
96 112 0.58
97 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (96 bp):
GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGACATGAGAGCTAGTGTAAGACCATG
TCTGGAACATGACATAGACCACAACATGAGA
Found at i:23328387 original size:143 final size:143
Alignment explanation
Indices: 23328116--23328446 Score: 405
Period size: 143 Copynumber: 2.3 Consensus size: 143
23328106 GACATTTGGG
* * ** *
23328116 TGATATGTGTGCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGGCATGAGAGCCAGTG
1 TGATATGTG-GCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATG
* * * *
23328181 TAAGACCATGTTTGGAACATGACATTAGCGATGTTGTGAGAGCCAGTGTAAGACCATGTCTGGGA
65 TAAGACCATGTCTGGAACATGACATCAGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGGA
*
23328246 CATGGCATTGGCAT
130 CATGGCATCGGCAT
*
23328260 TGATATGTGGCTAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATGT
1 TGATATGTGGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATGT
* * * * *
23328325 AAGACCATGTCTGGCATATGGCATCGGC-AT-TGAGACGAGAGCTAGTGTAAGACCATGTCTGGG
66 AAGACCATGTCTGGAACATGACATCAGCGATGT-AG-CGAGAGCCAGTGTAAGACCATGTCTGGG
*
23328388 ACATGGCATCGGCCT
129 ACATGGCATCGGCAT
** * * * *
23328403 CAACATGTAAGCCAGTGTAAGACCATGTTTGGAACATGTCATCG
1 TGATATGT-GGCCAGTGTAAGACCATGTCTGGAACATGGCATCG
23328447 GCAATTCACC
Statistics
Matches: 160, Mismatches: 24, Indels: 6
0.84 0.13 0.03
Matches are distributed among these distances:
141 1 0.01
142 3 0.02
143 116 0.73
144 40 0.25
ACGTcount: A:0.27, C:0.20, G:0.29, T:0.24
Consensus pattern (143 bp):
TGATATGTGGCCAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGAGCCAATGT
AAGACCATGTCTGGAACATGACATCAGCGATGTAGCGAGAGCCAGTGTAAGACCATGTCTGGGAC
ATGGCATCGGCAT
Found at i:23328416 original size:96 final size:95
Alignment explanation
Indices: 23328217--23328449 Score: 324
Period size: 96 Copynumber: 2.4 Consensus size: 95
23328207 AGCGATGTTG
* * * * *
23328217 TGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTGGCTAGTGTAAGAC
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAGGCTAGTGTAAGAC
23328282 CATGTCTGGAACATGGCATCGACCACAACA
66 CATGTCTGGAACATGGCATCGACCACAACA
* * *
23328312 TGAGAGCCAATGTAAGACCATGTCTGGCATATGGCATCGGCATTGAGACGAGAGCTAGTGTAAGA
1 TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAG-GCTAGTGTAAGA
* * *
23328377 CCATGTCTGGGACATGGCATCGGCCTCAACA
65 CCATGTCTGGAACATGGCATCGACCACAACA
* *
23328408 TGTA-AGCCAGTGTAAGACCATGTTTGGAACATGTCATCGGCA
1 TG-AGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCA
23328450 ATTCACCTTT
Statistics
Matches: 121, Mismatches: 15, Indels: 3
0.87 0.11 0.02
Matches are distributed among these distances:
95 45 0.37
96 75 0.62
97 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.28, T:0.23
Consensus pattern (95 bp):
TGAGAGCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCATTGAGACGAGGCTAGTGTAAGAC
CATGTCTGGAACATGGCATCGACCACAACA
Found at i:23328447 original size:48 final size:48
Alignment explanation
Indices: 23328126--23328448 Score: 274
Period size: 48 Copynumber: 6.8 Consensus size: 48
23328116 TGATATGTGT
* * * * **
23328126 GCCAGTGTAAGACCATGTCTGGGACATGGCGTCGACCACGGCATGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* * ** * ****
23328174 GCCAGTGTAAGACCATGTTTGGAACATGACATTAGCGAT-GTTGTGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC-CTCAACATGAGA
* * * ** * *
23328222 GCCAGTGTAAGACCATGTCTGGGACATGGCATTGGCATTGATATGTG-
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* * *
23328269 GCTAGTGTAAGACCATGTCTGGAACATGGCATCGACCACAACATGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* * * * ** * *
23328317 GCCAATGTAAGACCATGTCTGGCATATGGCATCGGCATTGAGACGAGA
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
* *
23328365 GCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCAACATGTA-A
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATG-AGA
* *
23328413 GCCAGTGTAAGACCATGTTTGGAACATGTCATCGGC
1 GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGC
23328449 AATTCACCTT
Statistics
Matches: 218, Mismatches: 53, Indels: 8
0.78 0.19 0.03
Matches are distributed among these distances:
47 39 0.18
48 178 0.82
49 1 0.00
ACGTcount: A:0.28, C:0.21, G:0.29, T:0.23
Consensus pattern (48 bp):
GCCAGTGTAAGACCATGTCTGGAACATGGCATCGGCCTCAACATGAGA
Done.