Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 66 of 297
Found at i:23331814 original size:57 final size:57
Alignment explanation
Indices: 23331717--23331832 Score: 187
Period size: 57 Copynumber: 2.0 Consensus size: 57
23331707 ATTTCCATGA
* *
23331717 TAAGCAAGTTGATAAATTGCTTATTATTTTCATACGGTCTTACTAAGATATAAATCT
1 TAAGCAAGTTGATAAATTGCTTATTATTTCCATACGGTCTTACTAAGATATAAAGCT
* * *
23331774 TAAGTAAGTTGATAAATTGCTTATTATTTCCATACTGTCTTACTAAGCTATAAAGCT
1 TAAGCAAGTTGATAAATTGCTTATTATTTCCATACGGTCTTACTAAGATATAAAGCT
23331831 TA
1 TA
23331833 CTCCATTCCT
Statistics
Matches: 54, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
57 54 1.00
ACGTcount: A:0.34, C:0.13, G:0.12, T:0.41
Consensus pattern (57 bp):
TAAGCAAGTTGATAAATTGCTTATTATTTCCATACGGTCTTACTAAGATATAAAGCT
Found at i:23334155 original size:50 final size:50
Alignment explanation
Indices: 23334101--23334262 Score: 288
Period size: 50 Copynumber: 3.2 Consensus size: 50
23334091 CACTCATTTT
* *
23334101 GCCGAATACACAAGATCAAATATAACATCACATATGTACATACCTATATG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
* *
23334151 GCCGAATATACAAGATCAAACATAACATCACATATGTCCATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
23334201 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
1 GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
23334251 GCCGAATATACA
1 GCCGAATATACA
23334263 TGGTCATTTA
Statistics
Matches: 106, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
50 106 1.00
ACGTcount: A:0.42, C:0.22, G:0.12, T:0.24
Consensus pattern (50 bp):
GCCGAATATACAAGATCAAATATAACATCACATATGTACATACCTATGTG
Found at i:23341110 original size:50 final size:50
Alignment explanation
Indices: 23341056--23341200 Score: 218
Period size: 50 Copynumber: 2.9 Consensus size: 50
23341046 CCGAATACAT
*
23341056 AAGATCAAATATAACATCACATATGTACATACCTATATGGCCGAACATAC
1 AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAACATAC
* * ** *
23341106 AAGATCAAACATAATATCACATATGTACATACCTATGTGGTTGAATATAC
1 AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAACATAC
* *
23341156 AAGATCAAAGATAACATCACATATGTACATACATATATGGCCGAA
1 AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAA
23341201 TGTACATGGT
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
50 83 1.00
ACGTcount: A:0.44, C:0.19, G:0.12, T:0.26
Consensus pattern (50 bp):
AAGATCAAACATAACATCACATATGTACATACCTATATGGCCGAACATAC
Found at i:23347681 original size:18 final size:18
Alignment explanation
Indices: 23347658--23347695 Score: 60
Period size: 18 Copynumber: 2.1 Consensus size: 18
23347648 TTTTCATTTT
23347658 ATATATTAAA-ATTAAAAA
1 ATATATTAAATA-TAAAAA
23347676 ATATATTAAATATAAAAA
1 ATATATTAAATATAAAAA
23347694 AT
1 AT
23347696 GTGATTCTTT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
18 18 0.95
19 1 0.05
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (18 bp):
ATATATTAAATATAAAAA
Found at i:23348683 original size:29 final size:29
Alignment explanation
Indices: 23348630--23348708 Score: 77
Period size: 31 Copynumber: 2.6 Consensus size: 29
23348620 AAAATTATAA
**
23348630 ATAAATTTTAATTTAATGTGTAATTACATAC
1 ATAAATTTTAATTT-A-GTACAATTACATAC
* *
23348661 ATAAATTTTAATTTAGTACAATTATATAT
1 ATAAATTTTAATTTAGTACAATTACATAC
*
23348690 ATGAAATTCTAATTATAGT
1 AT-AAATTTTAATT-TAGT
23348709 TCAAATGTAT
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
29 12 0.29
30 11 0.27
31 18 0.44
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.46
Consensus pattern (29 bp):
ATAAATTTTAATTTAGTACAATTACATAC
Found at i:23348953 original size:31 final size:29
Alignment explanation
Indices: 23348886--23348955 Score: 88
Period size: 29 Copynumber: 2.3 Consensus size: 29
23348876 AAATCAAAAT
**
23348886 TTCATGTATACAATTGCACAAAATTAAAG
1 TTCATGTATACAATTGCACAAAACCAAAG
23348915 TTCATGTATACAATTGCACATTAAACCATAA-
1 TTCATGTATACAATTGCACA--AAACCA-AAG
23348946 TTCATGTATA
1 TTCATGTATA
23348956 GTTTTGAGAA
Statistics
Matches: 36, Mismatches: 2, Indels: 4
0.86 0.05 0.10
Matches are distributed among these distances:
29 20 0.56
31 14 0.39
32 2 0.06
ACGTcount: A:0.41, C:0.16, G:0.09, T:0.34
Consensus pattern (29 bp):
TTCATGTATACAATTGCACAAAACCAAAG
Found at i:23349498 original size:25 final size:25
Alignment explanation
Indices: 23349470--23349517 Score: 62
Period size: 25 Copynumber: 1.9 Consensus size: 25
23349460 TTGTTTCAAT
*
23349470 TTTTTTCT-TTATTTTCATTTTTTTC
1 TTTTGTCTCTTATTTT-ATTTTTTTC
*
23349495 TTTTGTCTCTTCTTTTATTTTTT
1 TTTTGTCTCTTATTTTATTTTTT
23349518 AATTATTTAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
25 14 0.70
26 6 0.30
ACGTcount: A:0.06, C:0.12, G:0.02, T:0.79
Consensus pattern (25 bp):
TTTTGTCTCTTATTTTATTTTTTTC
Found at i:23356376 original size:14 final size:14
Alignment explanation
Indices: 23356357--23356391 Score: 70
Period size: 14 Copynumber: 2.5 Consensus size: 14
23356347 TATAAGAGTT
23356357 AACTCATGACACGC
1 AACTCATGACACGC
23356371 AACTCATGACACGC
1 AACTCATGACACGC
23356385 AACTCAT
1 AACTCAT
23356392 CTTAGATCCA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.37, C:0.34, G:0.11, T:0.17
Consensus pattern (14 bp):
AACTCATGACACGC
Found at i:23364403 original size:25 final size:26
Alignment explanation
Indices: 23364353--23364403 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
23364343 TATAAAATAT
* *
23364353 TAGTATAAAATAATTTTTTTGAATAAA
1 TAGTATAAAATAA-TCTTTTAAATAAA
23364380 TAGTATAAAATAA-CTTTTAAATAA
1 TAGTATAAAATAATCTTTTAAATAA
23364404 TGAACAAACT
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 9 0.41
27 13 0.59
ACGTcount: A:0.51, C:0.02, G:0.06, T:0.41
Consensus pattern (26 bp):
TAGTATAAAATAATCTTTTAAATAAA
Found at i:23365133 original size:20 final size:22
Alignment explanation
Indices: 23365105--23365154 Score: 63
Period size: 20 Copynumber: 2.5 Consensus size: 22
23365095 TTAATAATAT
*
23365105 AATAGAAAATTATAT-TT-TAA
1 AATATAAAATTATATGTTATAA
23365125 AATATAAAA-TATATGTTATAA
1 AATATAAAATTATATGTTATAA
23365146 AAT-TAAAAT
1 AATATAAAAT
23365155 ACTATTATTT
Statistics
Matches: 26, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 5 0.19
20 15 0.58
21 6 0.23
ACGTcount: A:0.58, C:0.00, G:0.04, T:0.38
Consensus pattern (22 bp):
AATATAAAATTATATGTTATAA
Found at i:23365155 original size:20 final size:19
Alignment explanation
Indices: 23365105--23365160 Score: 60
Period size: 20 Copynumber: 2.8 Consensus size: 19
23365095 TTAATAATAT
*
23365105 AATAGAAAATTATATTTTAA
1 AATATAAAA-TATATTTTAA
23365125 AATATAAAATATATGTTATAA
1 AATATAAAATATAT-TT-TAA
23365146 AAT-TAAAATACTATT
1 AATATAAAATA-TATT
23365161 ATTTCATAAG
Statistics
Matches: 32, Mismatches: 1, Indels: 6
0.82 0.03 0.15
Matches are distributed among these distances:
19 5 0.16
20 18 0.56
21 9 0.28
ACGTcount: A:0.55, C:0.02, G:0.04, T:0.39
Consensus pattern (19 bp):
AATATAAAATATATTTTAA
Found at i:23366814 original size:18 final size:18
Alignment explanation
Indices: 23366793--23366850 Score: 68
Period size: 18 Copynumber: 3.3 Consensus size: 18
23366783 TATATACTTA
23366793 CTTACTAAGCTATATAAG
1 CTTACTAAGCTATATAAG
* *
23366811 CTTACTTA--TATACTTA-
1 CTTACTAAGCTATA-TAAG
23366827 CTTACTAAGCTATATAAG
1 CTTACTAAGCTATATAAG
23366845 CTTACT
1 CTTACT
23366851 TTCTTTTCTC
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
16 11 0.34
17 4 0.12
18 17 0.53
ACGTcount: A:0.34, C:0.19, G:0.07, T:0.40
Consensus pattern (18 bp):
CTTACTAAGCTATATAAG
Found at i:23366825 original size:34 final size:34
Alignment explanation
Indices: 23366782--23366851 Score: 140
Period size: 34 Copynumber: 2.1 Consensus size: 34
23366772 TTGTTATTAT
23366782 TTATATACTTACTTACTAAGCTATATAAGCTTAC
1 TTATATACTTACTTACTAAGCTATATAAGCTTAC
23366816 TTATATACTTACTTACTAAGCTATATAAGCTTAC
1 TTATATACTTACTTACTAAGCTATATAAGCTTAC
23366850 TT
1 TT
23366852 TCTTTTCTCT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
34 36 1.00
ACGTcount: A:0.34, C:0.17, G:0.06, T:0.43
Consensus pattern (34 bp):
TTATATACTTACTTACTAAGCTATATAAGCTTAC
Found at i:23381705 original size:94 final size:93
Alignment explanation
Indices: 23381592--23381774 Score: 312
Period size: 94 Copynumber: 2.0 Consensus size: 93
23381582 TACATTTTTG
* * *
23381592 TATTTCAGCCTATTTTATATACTTTAGTTGATTTTGAATCATAAATCGACTATTGAAAGAATGAA
1 TATTTCAGCCTATTATATATACTTTAGCTGATTTTGAAGCATAAATCGACTATTGAAAGAATGAA
*
23381657 AATAAGTAATAGTGAGAGAAATCCCNTTA
66 AATAAGTAATAGAGAGAGAAATCCC-TTA
*
23381686 TATTTCAGCCTATTATATATATTTTAGCTGATTTTGAAGCATAAATCGACTATTGAAAGAATGAA
1 TATTTCAGCCTATTATATATACTTTAGCTGATTTTGAAGCATAAATCGACTATTGAAAGAATGAA
23381751 AATAAGTAATAGAGAGAGAAATCC
66 AATAAGTAATAGAGAGAGAAATCC
23381775 TGGTTGAACA
Statistics
Matches: 84, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
94 84 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.34
Consensus pattern (93 bp):
TATTTCAGCCTATTATATATACTTTAGCTGATTTTGAAGCATAAATCGACTATTGAAAGAATGAA
AATAAGTAATAGAGAGAGAAATCCCTTA
Found at i:23386686 original size:25 final size:28
Alignment explanation
Indices: 23386658--23386711 Score: 69
Period size: 29 Copynumber: 2.0 Consensus size: 28
23386648 ATGTGAATGT
*
23386658 TGTG-ATGGTTTG-ATA-TCAATGGATG
1 TGTGAATGGTATGTATATTCAATGGATG
23386683 TGTGATATGGTATGTATATTCAATGGATG
1 TGTGA-ATGGTATGTATATTCAATGGATG
23386712 AACTTTGATC
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
25 4 0.17
27 7 0.29
28 3 0.12
29 10 0.42
ACGTcount: A:0.26, C:0.04, G:0.30, T:0.41
Consensus pattern (28 bp):
TGTGAATGGTATGTATATTCAATGGATG
Found at i:23396373 original size:40 final size:40
Alignment explanation
Indices: 23396254--23396391 Score: 156
Period size: 40 Copynumber: 3.5 Consensus size: 40
23396244 CGGATGATAA
* * *
23396254 CCGGACTAAGATCCGAAGGCATTCGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
* * * * * *
23396294 CTGGGCTATGTCCCGAAGGCATTTATGCTAG-TGATTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTG-CTATAT
23396334 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
1 CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
23396374 CC-GGCTAA-ATCCCGAAGG
1 CCGGGCTAAGA-CCCGAAGG
23396392 TACTTGGGTT
Statistics
Matches: 80, Mismatches: 15, Indels: 7
0.78 0.15 0.07
Matches are distributed among these distances:
38 1 0.01
39 16 0.20
40 61 0.76
41 2 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (40 bp):
CCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCTATAT
Found at i:23396658 original size:22 final size:22
Alignment explanation
Indices: 23396618--23396659 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
23396608 GAATGTGCAT
*
23396618 ATATGAAGTTATTCATTTAGCC
1 ATATGAAGTTATACATTTAGCC
23396640 ATATGAATGTTATAC-TTTAG
1 ATATGAA-GTTATACATTTAG
23396660 TCAAAACTAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
22 12 0.67
23 6 0.33
ACGTcount: A:0.33, C:0.10, G:0.14, T:0.43
Consensus pattern (22 bp):
ATATGAAGTTATACATTTAGCC
Found at i:23405432 original size:83 final size:83
Alignment explanation
Indices: 23405293--23405579 Score: 502
Period size: 83 Copynumber: 3.5 Consensus size: 83
23405283 GGCTGTCACA
*
23405293 GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGAGTTTGTTTGAGAACGTTT
1 GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTT
23405358 GAGAGTCATATCTGCAAC
66 GAGAGTCATATCTGCAAC
23405376 GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTT
1 GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTT
* * *
23405441 GAGAGTCATATCTACTAT
66 GAGAGTCATATCTGCAAC
* * * *
23405459 GTCCTCGATTTGTTCCTTGTAAGCACAATGATGCCAAACCATCTTGAGTCTGTTTGAGGACATTT
1 GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTT
23405524 GAGAGTCATATCTGCAAC
66 GAGAGTCATATCTGCAAC
23405542 GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
1 GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAA
23405580 NNNNNNNNNN
Statistics
Matches: 192, Mismatches: 12, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 192 1.00
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (83 bp):
GTCCTCGATTTGTTCCTTGTAAGCACAAGGATGCCAAATCATCTTGAGTCTGTTTGAGAACGTTT
GAGAGTCATATCTGCAAC
Found at i:23408694 original size:28 final size:27
Alignment explanation
Indices: 23408650--23408751 Score: 125
Period size: 28 Copynumber: 3.7 Consensus size: 27
23408640 GGCCCCTTTA
* *
23408650 GGCCTAATCTCATTCATATGGCCCATC
1 GGCCCAATCACATTCATATGGCCCATC
*
23408677 GGTCCCAATCACATTCATATGGCCCATTA
1 GG-CCCAATCACATTCATATGGCCCA-TC
*
23408706 GGCCCAATCAC-TTCCATATGGCCCGTC
1 GGCCCAATCACATT-CATATGGCCCATC
23408733 AGGCCCAATCACATTCATA
1 -GGCCCAATCACATTCATA
23408752 GTCATGCAAT
Statistics
Matches: 65, Mismatches: 5, Indels: 9
0.82 0.06 0.11
Matches are distributed among these distances:
27 5 0.08
28 55 0.85
29 5 0.08
ACGTcount: A:0.25, C:0.34, G:0.15, T:0.25
Consensus pattern (27 bp):
GGCCCAATCACATTCATATGGCCCATC
Found at i:23408978 original size:8 final size:8
Alignment explanation
Indices: 23408965--23409007 Score: 50
Period size: 8 Copynumber: 5.4 Consensus size: 8
23408955 GTAGCCAAAC
*
23408965 TTTCGGCT
1 TTTCGGCA
23408973 TTTCGGCA
1 TTTCGGCA
*
23408981 TTTCGGCT
1 TTTCGGCA
*
23408989 TTTCAGCA
1 TTTCGGCA
*
23408997 TTTCGGGA
1 TTTCGGCA
23409005 TTT
1 TTT
23409008 ACCGATCTAC
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
8 29 1.00
ACGTcount: A:0.09, C:0.21, G:0.23, T:0.47
Consensus pattern (8 bp):
TTTCGGCA
Found at i:23408986 original size:16 final size:16
Alignment explanation
Indices: 23408965--23409002 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
23408955 GTAGCCAAAC
*
23408965 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCAGCA
23408981 TTTCGGCTTTTCAGCA
1 TTTCGGCTTTTCAGCA
23408997 TTTCGG
1 TTTCGG
23409003 GATTTACCGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.08, C:0.24, G:0.24, T:0.45
Consensus pattern (16 bp):
TTTCGGCTTTTCAGCA
Found at i:23413503 original size:71 final size:69
Alignment explanation
Indices: 23413354--23413533 Score: 209
Period size: 71 Copynumber: 2.6 Consensus size: 69
23413344 TTTTGGAAAG
* * *
23413354 CACATTAAGCATTTAAAATGGACTTAAATGAACACATTTTCAAGACAACAAATCAACCCTTTACA
1 CACATTAAGCATTTAAAATGAACGTAAATGAACACATTTTCAAGACAACAAATCAACACTTTACA
*
23413419 GCAG
66 GCAA
* * * * * * * *
23413423 CACATTAAGCATCTAAAATTAACGTGAGTGAACACATTTTTTTAAGATAACAAATTAGCACTTTA
1 CACATTAAGCATTTAAAATGAACGTAAATGAACACA--TTTTCAAGACAACAAATCAACACTTTA
23413488 CAGCAA
64 CAGCAA
*
23413494 CACATTAAGCATTT-AAATCGAACGTAAATGAAGACATTTT
1 CACATTAAGCATTTAAAAT-GAACGTAAATGAACACATTTT
23413534 TAATATAACA
Statistics
Matches: 91, Mismatches: 17, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
69 34 0.37
70 4 0.04
71 53 0.58
ACGTcount: A:0.43, C:0.18, G:0.11, T:0.28
Consensus pattern (69 bp):
CACATTAAGCATTTAAAATGAACGTAAATGAACACATTTTCAAGACAACAAATCAACACTTTACA
GCAA
Found at i:23426403 original size:26 final size:27
Alignment explanation
Indices: 23426374--23426427 Score: 74
Period size: 27 Copynumber: 2.0 Consensus size: 27
23426364 TCACACAAGT
*
23426374 TAGTCATTT-ACGCACGAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
* *
23426400 TAGTCATTTAACACCCTAGGGGCAAAA
1 TAGTCATTTAACACACGAGGGGCAAAA
23426427 T
1 T
23426428 GGTAATTTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
26 9 0.38
27 15 0.62
ACGTcount: A:0.35, C:0.20, G:0.22, T:0.22
Consensus pattern (27 bp):
TAGTCATTTAACACACGAGGGGCAAAA
Found at i:23426505 original size:54 final size:54
Alignment explanation
Indices: 23426432--23426546 Score: 160
Period size: 54 Copynumber: 2.1 Consensus size: 54
23426422 CAAAATGGTA
* *
23426432 ATTT-TACCCTACAATGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGGT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGAT
* * * *
23426485 ATTTCTACCCTACAAGGGTATTTTGGTAATTCTATTCTATAGGGGTATTTCGAT
1 ATTTCTACCCTACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGAT
*
23426539 AATTCTAC
1 ATTTCTAC
23426547 AACTTATCCA
Statistics
Matches: 54, Mismatches: 7, Indels: 1
0.87 0.11 0.02
Matches are distributed among these distances:
53 4 0.07
54 50 0.93
ACGTcount: A:0.24, C:0.18, G:0.17, T:0.40
Consensus pattern (54 bp):
ATTTCTACCCTACAAGGGTATCTCGGTAATTCTATCCTACAGGGGTATTTCGAT
Found at i:23426543 original size:27 final size:27
Alignment explanation
Indices: 23426428--23426545 Score: 128
Period size: 27 Copynumber: 4.4 Consensus size: 27
23426418 GGGGCAAAAT
* * ** *
23426428 GGTAATTTTACCCTACAATGGTATCTC
1 GGTAATTCTATCCTACAGGGGTATTTC
23426455 GGTAATTCTATCCTACAGGGGTATTTC
1 GGTAATTCTATCCTACAGGGGTATTTC
* * * *
23426482 GGTATTTCTACCCTACAAGGGTATTTT
1 GGTAATTCTATCCTACAGGGGTATTTC
* *
23426509 GGTAATTCTATTCTATAGGGGTATTTC
1 GGTAATTCTATCCTACAGGGGTATTTC
*
23426536 GATAATTCTA
1 GGTAATTCTA
23426546 CAACTTATCC
Statistics
Matches: 75, Mismatches: 16, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
27 75 1.00
ACGTcount: A:0.25, C:0.17, G:0.19, T:0.40
Consensus pattern (27 bp):
GGTAATTCTATCCTACAGGGGTATTTC
Found at i:23431958 original size:27 final size:26
Alignment explanation
Indices: 23431910--23431961 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
23431900 GCGAGGCTGC
*
23431910 CAGATATTGTGACGAAGTCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
* *
23431936 CAGATATATGTGGCGAGGCCACCAGA
1 CAGATAT-TGTGACGAAGCCACCAGA
23431962 TTGCAGCGCA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.35, C:0.21, G:0.27, T:0.17
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:23433816 original size:27 final size:27
Alignment explanation
Indices: 23433786--23433963 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23433776 ATATTGAGTC
* * * *
23433786 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23433813 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23433840 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23433868 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23433895 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23433922 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23433949 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23433964 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23433925 original size:82 final size:81
Alignment explanation
Indices: 23433807--23433962 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23433797 TGCTATATAA
* *
23433807 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23433872 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23433889 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23433953 CACTTAGTGC
65 CACTTAGTGC
23433963 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23441880 original size:27 final size:27
Alignment explanation
Indices: 23441850--23442027 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23441840 ATATTGAGTC
* * * *
23441850 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23441877 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23441904 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23441932 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23441959 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23441986 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23442013 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23442028 GTACAATAAA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23441989 original size:82 final size:81
Alignment explanation
Indices: 23441871--23442026 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23441861 TGCTATATAA
* *
23441871 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23441936 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23441953 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23442017 CACTTAGTGC
65 CACTTAGTGC
23442027 TGTACAATAA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23442530 original size:12 final size:12
Alignment explanation
Indices: 23442513--23442538 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
23442503 ATGGCATACT
23442513 TATGTATATATA
1 TATGTATATATA
23442525 TATGTATATATA
1 TATGTATATATA
23442537 TA
1 TA
23442539 CTTCGGAATG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.42, C:0.00, G:0.08, T:0.50
Consensus pattern (12 bp):
TATGTATATATA
Found at i:23443970 original size:27 final size:27
Alignment explanation
Indices: 23443905--23444020 Score: 117
Period size: 27 Copynumber: 4.3 Consensus size: 27
23443895 GGCAAAATGG
* * * *
23443905 TAATTTTACCCCATAAGGGTATCTC-A
1 TAATTCTACCCTATAGGGGTATTTCGA
* *
23443931 GAATTCTATCCTATAGGGGTATTTCGA
1 TAATTCTACCCTATAGGGGTATTTCGA
* * *
23443958 TATTTCTACCCTACAAGGGTATTTCGA
1 TAATTCTACCCTATAGGGGTATTTCGA
* * *
23443985 TAATTCTATCGTATAGGGGTATTTCGG
1 TAATTCTACCCTATAGGGGTATTTCGA
23444012 TAATTCTAC
1 TAATTCTAC
23444021 AACTTATCCA
Statistics
Matches: 71, Mismatches: 18, Indels: 1
0.79 0.20 0.01
Matches are distributed among these distances:
26 19 0.27
27 52 0.73
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (27 bp):
TAATTCTACCCTATAGGGGTATTTCGA
Found at i:23444002 original size:54 final size:53
Alignment explanation
Indices: 23443905--23444020 Score: 151
Period size: 54 Copynumber: 2.2 Consensus size: 53
23443895 GGCAAAATGG
* * *
23443905 TAATTTTACCCCATAAGGGTATCTCAGAATTCTATCCTATAGGGGTATTTCGA
1 TAATTCTACCCTACAAGGGTATCTCAGAATTCTATCCTATAGGGGTATTTCGA
* * * * *
23443958 TATTTCTACCCTACAAGGGTATTTCGATAATTCTATCGTATAGGGGTATTTCGG
1 TAATTCTACCCTACAAGGGTATCTC-AGAATTCTATCCTATAGGGGTATTTCGA
23444012 TAATTCTAC
1 TAATTCTAC
23444021 AACTTATCCA
Statistics
Matches: 53, Mismatches: 9, Indels: 1
0.84 0.14 0.02
Matches are distributed among these distances:
53 20 0.38
54 33 0.62
ACGTcount: A:0.27, C:0.18, G:0.17, T:0.38
Consensus pattern (53 bp):
TAATTCTACCCTACAAGGGTATCTCAGAATTCTATCCTATAGGGGTATTTCGA
Found at i:23447792 original size:40 final size:40
Alignment explanation
Indices: 23447716--23447939 Score: 308
Period size: 40 Copynumber: 5.6 Consensus size: 40
23447706 CAAACTCAAG
* * *
23447716 TGCCTTCGGGATTTAG-CCGGATATAGT-AACTTGCACAGA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAA-TAGCACAAA
*
23447755 TGCCTTCGGGTCTTAGCCCGGATATAGTCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * * *
23447795 AGCCTTCGGGACTTAGCCCGAATATAATCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
23447835 TGCCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
*
23447875 TGCCTTCGGGACTTAGCCCGGATATAATCAATAGCACAAA
1 TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
* * *
23447915 TGCCCTCGGGACTTAACCCAGATAT
1 TGCCTTCGGGACTTAGCCCGGATAT
23447940 CATTCGAATA
Statistics
Matches: 166, Mismatches: 17, Indels: 3
0.89 0.09 0.02
Matches are distributed among these distances:
39 14 0.08
40 150 0.90
41 2 0.01
ACGTcount: A:0.29, C:0.26, G:0.21, T:0.24
Consensus pattern (40 bp):
TGCCTTCGGGACTTAGCCCGGATATAGTCAATAGCACAAA
Found at i:23461063 original size:11 final size:11
Alignment explanation
Indices: 23461040--23461078 Score: 55
Period size: 10 Copynumber: 3.7 Consensus size: 11
23461030 CTAGGATGAT
23461040 TGTTTTG-GCA
1 TGTTTTGAGCA
23461050 TGTTTTGAGCA
1 TGTTTTGAGCA
*
23461061 TG-TTTGATCA
1 TGTTTTGAGCA
23461071 TGTTTTGA
1 TGTTTTGA
23461079 ATAGGTTAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 16 0.62
11 10 0.38
ACGTcount: A:0.15, C:0.08, G:0.26, T:0.51
Consensus pattern (11 bp):
TGTTTTGAGCA
Found at i:23461427 original size:30 final size:30
Alignment explanation
Indices: 23461391--23461457 Score: 109
Period size: 30 Copynumber: 2.2 Consensus size: 30
23461381 GTGTCATATC
*
23461391 CGTGTGATTCACAAGGCCTGGCCACAT-GA
1 CGTGTGAGTCACAAGGCCTGGCCACATGGA
23461420 CTGTGTGAGTCACAAGGCCTGGCCACATGGA
1 C-GTGTGAGTCACAAGGCCTGGCCACATGGA
23461451 CGTGTGA
1 CGTGTGA
23461458 CCCCTGTAGC
Statistics
Matches: 35, Mismatches: 1, Indels: 3
0.90 0.03 0.08
Matches are distributed among these distances:
29 1 0.03
30 31 0.89
31 3 0.09
ACGTcount: A:0.22, C:0.25, G:0.31, T:0.21
Consensus pattern (30 bp):
CGTGTGAGTCACAAGGCCTGGCCACATGGA
Found at i:23472965 original size:30 final size:30
Alignment explanation
Indices: 23472931--23472991 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
23472921 TCCTTAACTC
23472931 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
23472961 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
23472991 A
1 A
23472992 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:23476658 original size:14 final size:14
Alignment explanation
Indices: 23476639--23476674 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
23476629 TCAGTTAAAA
23476639 CACAGTCATACAAC
1 CACAGTCATACAAC
*
23476653 CACAGTCATACAAT
1 CACAGTCATACAAC
23476667 CACAGTCA
1 CACAGTCA
23476675 AATCTATCAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.42, C:0.33, G:0.08, T:0.17
Consensus pattern (14 bp):
CACAGTCATACAAC
Found at i:23476760 original size:27 final size:28
Alignment explanation
Indices: 23476730--23476790 Score: 88
Period size: 28 Copynumber: 2.2 Consensus size: 28
23476720 CAAAACAATT
* **
23476730 ATTTTACCCTACAA-GGGTATTTTGGTA
1 ATTTTACACTACAAGGGGTATTTCAGTA
23476757 ATTTTACACTACAAGGGGTATTTCAGTA
1 ATTTTACACTACAAGGGGTATTTCAGTA
23476785 ATTTTA
1 ATTTTA
23476791 TAAACCGGTG
Statistics
Matches: 30, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
27 13 0.43
28 17 0.57
ACGTcount: A:0.30, C:0.13, G:0.16, T:0.41
Consensus pattern (28 bp):
ATTTTACACTACAAGGGGTATTTCAGTA
Found at i:23476813 original size:27 final size:27
Alignment explanation
Indices: 23476770--23476844 Score: 109
Period size: 27 Copynumber: 2.8 Consensus size: 27
23476760 TTACACTACA
23476770 AGGGGTATTTC-AGTAATTTTATAAACC
1 AGGGGTATTTCGA-TAATTTTATAAACC
23476797 -GGTGGTATTTCGATAATTTTATAAACC
1 AGG-GGTATTTCGATAATTTTATAAACC
*
23476824 AGGGGTATTTTGATAATTTTA
1 AGGGGTATTTCGATAATTTTA
23476845 CAAATTGGGG
Statistics
Matches: 44, Mismatches: 1, Indels: 6
0.86 0.02 0.12
Matches are distributed among these distances:
26 2 0.05
27 39 0.89
28 3 0.07
ACGTcount: A:0.31, C:0.08, G:0.20, T:0.41
Consensus pattern (27 bp):
AGGGGTATTTCGATAATTTTATAAACC
Found at i:23481658 original size:19 final size:19
Alignment explanation
Indices: 23481634--23481674 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
23481624 TTTCTACAAT
23481634 CGTCCACATAGCTGGTGCC
1 CGTCCACATAGCTGGTGCC
23481653 CGTCCACATAGCTGGTGCC
1 CGTCCACATAGCTGGTGCC
23481672 CGT
1 CGT
23481675 ATACTTTCCC
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.15, C:0.37, G:0.27, T:0.22
Consensus pattern (19 bp):
CGTCCACATAGCTGGTGCC
Found at i:23483170 original size:28 final size:27
Alignment explanation
Indices: 23483126--23483190 Score: 85
Period size: 28 Copynumber: 2.4 Consensus size: 27
23483116 CATCACAGAC
* * * *
23483126 ACAGTATCAGGTGGGCTTTAGCCCATT
1 ACAGAATCAGGTAGGCTTAAGCCCAAT
23483153 AACAGAATCAGGTAGGCTTAAGCCCAAT
1 -ACAGAATCAGGTAGGCTTAAGCCCAAT
23483181 ACAGAATCAG
1 ACAGAATCAG
23483191 TATCAGATGC
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 10 0.30
28 23 0.70
ACGTcount: A:0.34, C:0.22, G:0.23, T:0.22
Consensus pattern (27 bp):
ACAGAATCAGGTAGGCTTAAGCCCAAT
Found at i:23485569 original size:91 final size:91
Alignment explanation
Indices: 23485414--23485597 Score: 359
Period size: 91 Copynumber: 2.0 Consensus size: 91
23485404 ATATCCTCAA
23485414 TTAATTATAAGGTCTATAGGCCAAAGTCCAAGTTCTTTTAAAAGAAAAACCAAAATAAATTGCAA
1 TTAATTATAAGGTCTATAGGCCAAAGTCCAAGTTCTTTTAAAAGAAAAACCAAAATAAATTGCAA
*
23485479 GAGCCAAGACTTGAACCCAGGCTCCC
66 GAGCCAAGACTTGAACCCAGACTCCC
23485505 TTAATTATAAGGTCTATAGGCCAAAGTCCAAGTTCTTTTAAAAGAAAAACCAAAATAAATTGCAA
1 TTAATTATAAGGTCTATAGGCCAAAGTCCAAGTTCTTTTAAAAGAAAAACCAAAATAAATTGCAA
23485570 GAGCCAAGACTTGAACCCAGACTCCC
66 GAGCCAAGACTTGAACCCAGACTCCC
23485596 TT
1 TT
23485598 GCAACCTTAA
Statistics
Matches: 92, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
91 92 1.00
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.24
Consensus pattern (91 bp):
TTAATTATAAGGTCTATAGGCCAAAGTCCAAGTTCTTTTAAAAGAAAAACCAAAATAAATTGCAA
GAGCCAAGACTTGAACCCAGACTCCC
Found at i:23491145 original size:22 final size:22
Alignment explanation
Indices: 23491114--23491170 Score: 60
Period size: 22 Copynumber: 2.6 Consensus size: 22
23491104 AAATACGTTT
*
23491114 GCACAAAGCCATAGTCAAGATG
1 GCACAGAGCCATAGTCAAGATG
** * * *
23491136 GCACAGAGCCATTTTTAGGTTG
1 GCACAGAGCCATAGTCAAGATG
23491158 GCACAGAGCCATA
1 GCACAGAGCCATA
23491171 ATCAGATTAC
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
22 28 1.00
ACGTcount: A:0.33, C:0.23, G:0.25, T:0.19
Consensus pattern (22 bp):
GCACAGAGCCATAGTCAAGATG
Found at i:23491512 original size:27 final size:27
Alignment explanation
Indices: 23491482--23491569 Score: 79
Period size: 27 Copynumber: 3.3 Consensus size: 27
23491472 CAAAACAGTC
*
23491482 ATTTTACCCTACAGGGGTATTTTGGTA
1 ATTTTACCCTACAGGGGTATTTCGGTA
** * * *
23491509 ATTTTATACTATAAGGGTATTTCGATA
1 ATTTTACCCTACAGGGGTATTTCGGTA
** *
23491536 ATTTTA-CAAACTGGGGGTATTTCGGTA
1 ATTTTACCCTAC-AGGGGTATTTCGGTA
23491563 ATTTTAC
1 ATTTTAC
23491570 AAATCGAGAT
Statistics
Matches: 46, Mismatches: 13, Indels: 3
0.74 0.21 0.05
Matches are distributed among these distances:
26 1 0.02
27 45 0.98
ACGTcount: A:0.27, C:0.11, G:0.19, T:0.42
Consensus pattern (27 bp):
ATTTTACCCTACAGGGGTATTTCGGTA
Found at i:23491570 original size:27 final size:27
Alignment explanation
Indices: 23491496--23491600 Score: 106
Period size: 27 Copynumber: 3.9 Consensus size: 27
23491486 TACCCTACAG
* * * *
23491496 GGGTATTTTGGTAATTTTATACTAT-AA
1 GGGTATTTCGGTAATTTTACA-AATCGA
* *
23491523 GGGTATTTCGATAATTTTACAAA-CTGG
1 GGGTATTTCGGTAATTTTACAAATC-GA
23491550 GGGTATTTCGGTAATTTTACAAATCGA
1 GGGTATTTCGGTAATTTTACAAATCGA
**
23491577 GATTATTTCGGTAATTTTACAAAT
1 GGGTATTTCGGTAATTTTACAAAT
23491601 TAGGGTCTTA
Statistics
Matches: 65, Mismatches: 10, Indels: 6
0.80 0.12 0.07
Matches are distributed among these distances:
26 1 0.02
27 63 0.97
28 1 0.02
ACGTcount: A:0.30, C:0.09, G:0.19, T:0.42
Consensus pattern (27 bp):
GGGTATTTCGGTAATTTTACAAATCGA
Found at i:23491966 original size:18 final size:17
Alignment explanation
Indices: 23491937--23491970 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
23491927 TACCCACGCG
23491937 GGCCCATAGGCCCATTA
1 GGCCCATAGGCCCATTA
23491954 GGCCCATACGGCCCATT
1 GGCCCATA-GGCCCATT
23491971 TAACCCAGAA
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 8 0.50
18 8 0.50
ACGTcount: A:0.21, C:0.38, G:0.24, T:0.18
Consensus pattern (17 bp):
GGCCCATAGGCCCATTA
Found at i:23498955 original size:27 final size:27
Alignment explanation
Indices: 23498925--23499102 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23498915 ATATTGAGTC
* * * *
23498925 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAGTCAAAT
* *
23498952 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23498979 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAGTCAAA-T
** * *
23499007 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAGTCAAAT
* **
23499034 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAGTCAAAT
*
23499061 CGCACACTTAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAGTCAAAT
23499088 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23499103 GTACAATTTA
Statistics
Matches: 130, Mismatches: 18, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 24 0.18
ACGTcount: A:0.30, C:0.28, G:0.15, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAGTCAAAT
Found at i:23499064 original size:82 final size:81
Alignment explanation
Indices: 23498946--23499101 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23498936 TGCTATATAA
* *
23498946 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23499011 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * **
23499028 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCAAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23499092 CACTTAGTGC
65 CACTTAGTGC
23499102 TGTACAATTT
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 16 0.24
82 51 0.76
ACGTcount: A:0.29, C:0.28, G:0.15, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23507146 original size:27 final size:27
Alignment explanation
Indices: 23507116--23507293 Score: 180
Period size: 27 Copynumber: 6.6 Consensus size: 27
23507106 ATATTGAGCC
* *
23507116 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
23507143 CGCACACTTAGTGCTACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
23507170 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
23507198 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
23507225 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
23507252 CGCACACTTAGTGCAACATAGTCGAA-T
1 CGCACACTTAGTGCTACATAATC-AACT
23507279 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
23507294 GTACAATTTA
Statistics
Matches: 129, Mismatches: 18, Indels: 8
0.83 0.12 0.05
Matches are distributed among these distances:
27 104 0.81
28 25 0.19
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:23507255 original size:82 final size:81
Alignment explanation
Indices: 23507137--23507292 Score: 224
Period size: 82 Copynumber: 1.9 Consensus size: 81
23507127 TGCTATATAA
* *
23507137 TCAACTCGCACACTTAGTGCTACGTAATCAAATCGCACACTTAGTGCTACATAGTCAAACTCGCA
1 TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAA-TCGCA
23507202 CACTTAGTGCCGCATGG
65 CACTTAGTGCCGCATGG
* * ** *
23507219 TCAATTCGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACATAGTCGAATCGCA
1 TCAACTCGCACACTTAGTGCTA-CATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCA
23507283 CACTTAGTGC
65 CACTTAGTGC
23507293 TGTACAATTT
Statistics
Matches: 66, Mismatches: 7, Indels: 3
0.87 0.09 0.04
Matches are distributed among these distances:
81 16 0.24
82 50 0.76
ACGTcount: A:0.29, C:0.28, G:0.16, T:0.27
Consensus pattern (81 bp):
TCAACTCGCACACTTAGTGCTACATAATCAAATCGCACACTTAGTGCAACATAGTCAAATCGCAC
ACTTAGTGCCGCATGG
Found at i:23509645 original size:42 final size:42
Alignment explanation
Indices: 23509526--23509645 Score: 159
Period size: 43 Copynumber: 2.8 Consensus size: 42
23509516 TACCATACCA
**
23509526 ATGTCATATCCCAGATATGGTCTTACATGTAATCTTGTATCG
1 ATGTCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
* * * * * *
23509568 ATGCCAATAGCCTAGCTATGGTCTTACACGAAATCTCATATCG
1 ATGTC-ATATCCCAGATATGGTCTTACATGTAATCTCATATCG
23509611 ATGTCATATCCCAGATATGGTCTTACATGTAATCT
1 ATGTCATATCCCAGATATGGTCTTACATGTAATCT
23509646 TAGCTACCCT
Statistics
Matches: 63, Mismatches: 14, Indels: 2
0.80 0.18 0.03
Matches are distributed among these distances:
42 29 0.46
43 34 0.54
ACGTcount: A:0.28, C:0.22, G:0.16, T:0.34
Consensus pattern (42 bp):
ATGTCATATCCCAGATATGGTCTTACATGTAATCTCATATCG
Found at i:23510873 original size:15 final size:15
Alignment explanation
Indices: 23510841--23510869 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23510831 ATATTCTATG
23510841 TTTATTATGTGTGAA
1 TTTATTATGTGTGAA
23510856 TTTA-TATGTGTGAA
1 TTTATTATGTGTGAA
23510870 ATTTTCGTGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.28, C:0.00, G:0.21, T:0.52
Consensus pattern (15 bp):
TTTATTATGTGTGAA
Found at i:23520352 original size:15 final size:15
Alignment explanation
Indices: 23520305--23520360 Score: 71
Period size: 15 Copynumber: 3.7 Consensus size: 15
23520295 CAAGAAAATC
23520305 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
*
23520320 -AGATAGAA-AAACCCA
1 GA-ATA-AAGAAATCCA
23520335 GAATAAAGAAATCCA
1 GAATAAAGAAATCCA
23520350 GAATAAAGAAA
1 GAATAAAGAAA
23520361 CCCAAGATAC
Statistics
Matches: 35, Mismatches: 2, Indels: 8
0.78 0.04 0.18
Matches are distributed among these distances:
14 3 0.09
15 29 0.83
16 3 0.09
ACGTcount: A:0.62, C:0.12, G:0.14, T:0.11
Consensus pattern (15 bp):
GAATAAAGAAATCCA
Found at i:23526576 original size:23 final size:22
Alignment explanation
Indices: 23526550--23526614 Score: 69
Period size: 23 Copynumber: 2.7 Consensus size: 22
23526540 GATTGTCAAA
23526550 AAAAGAAAGAAGAGAGAAAAAAG
1 AAAAGAAAGAAGAGA-AAAAAAG
23526573 AAAAGAAAAGTAA-AGAAAAAAAG
1 AAAAG-AAAG-AAGAGAAAAAAAG
23526596 AGAAGAGAAGAGAAGAGAA
1 A-AA-AGAA-AGAAGAGAA
23526615 GTGAAGTAAA
Statistics
Matches: 36, Mismatches: 0, Indels: 10
0.78 0.00 0.22
Matches are distributed among these distances:
23 13 0.36
24 13 0.36
25 10 0.28
ACGTcount: A:0.72, C:0.00, G:0.26, T:0.02
Consensus pattern (22 bp):
AAAAGAAAGAAGAGAAAAAAAG
Found at i:23526578 original size:5 final size:5
Alignment explanation
Indices: 23526550--23526645 Score: 56
Period size: 5 Copynumber: 19.6 Consensus size: 5
23526540 GATTGTCAAA
* * *
23526550 AAAAG -AAAG AAGAG AGAA- AAAAG AAAAG AAAAG TAAAG -AAA- AAAAG
1 AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG AAAAG
* * * * ** *
23526596 AGAAG AGAAG AGAAG AGAAG TGAAG TAAAGAG AAAAG AAAGG AAAAG AAA
1 AAAAG AAAAG AAAAG AAAAG AAAAG -AAA-AG AAAAG AAAAG AAAAG AAA
23526646 GGGAGACGAC
Statistics
Matches: 74, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
4 13 0.18
5 55 0.74
6 4 0.05
7 2 0.03
ACGTcount: A:0.70, C:0.00, G:0.27, T:0.03
Consensus pattern (5 bp):
AAAAG
Found at i:23556689 original size:28 final size:28
Alignment explanation
Indices: 23556657--23556726 Score: 99
Period size: 28 Copynumber: 2.5 Consensus size: 28
23556647 ATAGTAAGTC
23556657 CGCACACTTAGTGCT-TA-ATAGTCAAACT
1 CGCACACTTAGTGCTATACA-A-TCAAACT
*
23556685 CGCACACTTAGTGCTATACAATTAAACT
1 CGCACACTTAGTGCTATACAATCAAACT
23556713 CGCACACTTAGTGC
1 CGCACACTTAGTGC
23556727 CAATCTCATT
Statistics
Matches: 39, Mismatches: 1, Indels: 4
0.89 0.02 0.09
Matches are distributed among these distances:
28 35 0.90
29 3 0.08
30 1 0.03
ACGTcount: A:0.31, C:0.27, G:0.14, T:0.27
Consensus pattern (28 bp):
CGCACACTTAGTGCTATACAATCAAACT
Found at i:23562076 original size:14 final size:14
Alignment explanation
Indices: 23562057--23562083 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
23562047 ATATGTGTGA
23562057 AATTTTTTTGATTT
1 AATTTTTTTGATTT
23562071 AATTTTTTTGATT
1 AATTTTTTTGATT
23562084 GGTTGTTTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.22, C:0.00, G:0.07, T:0.70
Consensus pattern (14 bp):
AATTTTTTTGATTT
Found at i:23563255 original size:43 final size:41
Alignment explanation
Indices: 23563163--23563259 Score: 104
Period size: 43 Copynumber: 2.3 Consensus size: 41
23563153 GTGTGATTCG
**
23563163 TGTAAGACCATGTCTAGGACATTGGCATCGAAGTGAGAAAA
1 TGTAAGACCATGTCTAGGACAGAGGCATCGAAGTGAGAAAA
* * * *
23563204 TGTTTAAGACCCTGTCTGGGACAGAGGCATCGAAATGTGATAACA
1 TG--TAAGACCATGTCTAGGACAGAGGCATCG-AA-GTGAGAAAA
23563249 TGTAAGACCAT
1 TGTAAGACCAT
23563260 ATCCGGGATA
Statistics
Matches: 45, Mismatches: 7, Indels: 6
0.78 0.12 0.10
Matches are distributed among these distances:
41 2 0.04
43 32 0.71
44 2 0.04
45 9 0.20
ACGTcount: A:0.34, C:0.16, G:0.26, T:0.24
Consensus pattern (41 bp):
TGTAAGACCATGTCTAGGACAGAGGCATCGAAGTGAGAAAA
Found at i:23563991 original size:19 final size:20
Alignment explanation
Indices: 23563967--23564004 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
23563957 TTGGGAAATA
23563967 TGTTAT-ATGGTTTATGATG
1 TGTTATAATGGTTTATGATG
*
23563986 TGTTATAATGTTTTATGAT
1 TGTTATAATGGTTTATGAT
23564005 TTGGAAAATG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
19 6 0.35
20 11 0.65
ACGTcount: A:0.24, C:0.00, G:0.21, T:0.55
Consensus pattern (20 bp):
TGTTATAATGGTTTATGATG
Found at i:23567227 original size:68 final size:67
Alignment explanation
Indices: 23567155--23567304 Score: 171
Period size: 67 Copynumber: 2.2 Consensus size: 67
23567145 CATCATGTGT
* * * *
23567155 ACAAGAGAGCTACAAGACATTATGATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACC
1 ACAAGAGAGCTAC--GACA-TAT-ATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACC
23567217 ATGTAG
62 ATGTAG
** * *
23567223 ACAAGAGAGCTACGGGATATATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGT
1 ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
23567288 AG
66 AG
23567290 ACAAGAGAGCTACGA
1 ACAAGAGAGCTACGA
23567305 GATAAACTGG
Statistics
Matches: 70, Mismatches: 9, Indels: 7
0.81 0.10 0.08
Matches are distributed among these distances:
64 20 0.29
65 7 0.10
66 4 0.06
67 26 0.37
68 13 0.19
ACGTcount: A:0.33, C:0.17, G:0.29, T:0.21
Consensus pattern (67 bp):
ACAAGAGAGCTACGACATATATGTAGCTAGGTCGCATGCGTGGATACAAGTGAAGGACACCATGT
AG
Found at i:23567260 original size:64 final size:64
Alignment explanation
Indices: 23567179--23567362 Score: 194
Period size: 67 Copynumber: 2.8 Consensus size: 64
23567169 AGACATTATG
* *
23567179 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGGGATAT
1 ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
* * * * * *
23567243 ATGTAGCTAGGTCGCATGCGTGGTTCCAAGTGAAGGACACCATGTAGACAAGAGAGCTACGAGAT
1 ATGTAGCTAGGTCGCATGGGT-GATACTA-TG-TGTACACCATGTAGACAAGAGAGCTACGAGAT
23567308 AA
63 AA
* * * *
23567310 ACTG--GCTAGGTCACATGGGTGGTACTAAGTGTTCACCATGT-GTACAAGAGAGC
1 A-TGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAG-ACAAGAGAGC
23567363 CGAACTATAT
Statistics
Matches: 98, Mismatches: 17, Indels: 11
0.78 0.13 0.09
Matches are distributed among these distances:
62 1 0.01
63 19 0.19
64 21 0.21
65 8 0.08
66 16 0.16
67 31 0.32
68 2 0.02
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (64 bp):
ATGTAGCTAGGTCGCATGGGTGATACTATGTGTACACCATGTAGACAAGAGAGCTACGAGATAA
Found at i:23569781 original size:50 final size:50
Alignment explanation
Indices: 23569706--23569950 Score: 253
Period size: 50 Copynumber: 4.9 Consensus size: 50
23569696 TTATGCTAGG
*
23569706 GAGATATGAGGGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* * * *
23569756 GAGATATGAGAGCTAGTGTAAGACCATGACTGGAACATGGCATTGGCCTC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
* ** * *
23569806 GAGATATTAGAGCTAGTGTAAGAAAATGTCTGGGACATGGCATTGGCAC-C
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC-CTC
* * * * **
23569856 GATAGATGAGAGCCACTGTAAGACCATGTCAAGGACATGGCATCGA-CT-
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
** * * * * *
23569904 TTGATGTGTGAGCCAATGTAAGACCATGTCTGGGACATGGCGTCGAC
1 GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGAC
23569951 ACCTTACCAT
Statistics
Matches: 161, Mismatches: 31, Indels: 7
0.81 0.16 0.04
Matches are distributed among these distances:
48 37 0.23
50 123 0.76
51 1 0.01
ACGTcount: A:0.29, C:0.18, G:0.30, T:0.22
Consensus pattern (50 bp):
GAGATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGACCTC
Found at i:23574193 original size:39 final size:39
Alignment explanation
Indices: 23574078--23574181 Score: 172
Period size: 39 Copynumber: 2.7 Consensus size: 39
23574068 AGTGATGAAG
* *
23574078 TATATCCGGACTTAAGGTCTGCAGGCTATGTGCTAGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
23574117 TATATCCAGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
1 TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
*
23574156 TATAACCGGACTTAAGGTCCGCAGGC
1 TATATCCGGACTTAAGGTCCGCAGGC
23574182 GACGTGTTGG
Statistics
Matches: 60, Mismatches: 5, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
39 60 1.00
ACGTcount: A:0.26, C:0.21, G:0.26, T:0.27
Consensus pattern (39 bp):
TATATCCGGACTTAAGGTCCGCAGGCTATGTGCTGGAAT
Found at i:23577502 original size:280 final size:280
Alignment explanation
Indices: 23577001--23577560 Score: 1120
Period size: 280 Copynumber: 2.0 Consensus size: 280
23576991 CTGGCTTGAA
23577001 CAGGTTACCCGCAGTAATATCCTCAATGTTGGCTCAGAAATATGTAAAAAAGGGGTGTGAAGCAT
1 CAGGTTACCCGCAGTAATATCCTCAATGTTGGCTCAGAAATATGTAAAAAAGGGGTGTGAAGCAT
23577066 ATCTTGCGTACGTACTTGATAGTAAAGAGTCAGAAAAGAAACTTGAATCGGTGCCAGTGGTCTGT
66 ATCTTGCGTACGTACTTGATAGTAAAGAGTCAGAAAAGAAACTTGAATCGGTGCCAGTGGTCTGT
23577131 GAGTATTCGGATGTTTTTCCTGAGGAGTTACCAGGATTACCACCTGTTCGAGAGGTAGAGTTCGG
131 GAGTATTCGGATGTTTTTCCTGAGGAGTTACCAGGATTACCACCTGTTCGAGAGGTAGAGTTCGG
23577196 CATTGAACTTGTACCTGGGACTACACCAATTTCGATAGCTCCATATCGTATGGCACCAACCGAAT
196 CATTGAACTTGTACCTGGGACTACACCAATTTCGATAGCTCCATATCGTATGGCACCAACCGAAT
23577261 TGAAGGAATTGAAAGCTCGT
261 TGAAGGAATTGAAAGCTCGT
23577281 CAGGTTACCCGCAGTAATATCCTCAATGTTGGCTCAGAAATATGTAAAAAAGGGGTGTGAAGCAT
1 CAGGTTACCCGCAGTAATATCCTCAATGTTGGCTCAGAAATATGTAAAAAAGGGGTGTGAAGCAT
23577346 ATCTTGCGTACGTACTTGATAGTAAAGAGTCAGAAAAGAAACTTGAATCGGTGCCAGTGGTCTGT
66 ATCTTGCGTACGTACTTGATAGTAAAGAGTCAGAAAAGAAACTTGAATCGGTGCCAGTGGTCTGT
23577411 GAGTATTCGGATGTTTTTCCTGAGGAGTTACCAGGATTACCACCTGTTCGAGAGGTAGAGTTCGG
131 GAGTATTCGGATGTTTTTCCTGAGGAGTTACCAGGATTACCACCTGTTCGAGAGGTAGAGTTCGG
23577476 CATTGAACTTGTACCTGGGACTACACCAATTTCGATAGCTCCATATCGTATGGCACCAACCGAAT
196 CATTGAACTTGTACCTGGGACTACACCAATTTCGATAGCTCCATATCGTATGGCACCAACCGAAT
23577541 TGAAGGAATTGAAAGCTCGT
261 TGAAGGAATTGAAAGCTCGT
23577561 TTGCAAGAGT
Statistics
Matches: 280, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
280 280 1.00
ACGTcount: A:0.29, C:0.19, G:0.25, T:0.27
Consensus pattern (280 bp):
CAGGTTACCCGCAGTAATATCCTCAATGTTGGCTCAGAAATATGTAAAAAAGGGGTGTGAAGCAT
ATCTTGCGTACGTACTTGATAGTAAAGAGTCAGAAAAGAAACTTGAATCGGTGCCAGTGGTCTGT
GAGTATTCGGATGTTTTTCCTGAGGAGTTACCAGGATTACCACCTGTTCGAGAGGTAGAGTTCGG
CATTGAACTTGTACCTGGGACTACACCAATTTCGATAGCTCCATATCGTATGGCACCAACCGAAT
TGAAGGAATTGAAAGCTCGT
Found at i:23580842 original size:27 final size:27
Alignment explanation
Indices: 23580811--23580988 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
23580801 TAAATTGTAC
23580811 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
23580838 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23580864 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
23580892 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
23580920 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
23580947 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
23580974 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
23580989 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:23580925 original size:82 final size:81
Alignment explanation
Indices: 23580812--23580967 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
23580802 AAATTGTACA
* *
23580812 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
23580876 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
23580893 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
23580958 TGCGAGTTGA
65 TGCGAATTGA
23580968 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:23580979 original size:82 final size:81
Alignment explanation
Indices: 23580808--23580988 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
23580798 GATTAAATTG
* *
23580808 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
23580873 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
23580889 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
23580953 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
23580971 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
23580989 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:23585230 original size:39 final size:39
Alignment explanation
Indices: 23585176--23585291 Score: 160
Period size: 39 Copynumber: 3.0 Consensus size: 39
23585166 AGTGATGAAG
* *
23585176 TATATCTGAACTTAAGGTCTACAGGCTATGTGCTGGAAT
1 TATATCTGGACTTAAGGTCTGCAGGCTATGTGCTGGAAT
* *
23585215 TATATCTGGACTTAAGCTCCGCAGGCTATGTGCTGGAAT
1 TATATCTGGACTTAAGGTCTGCAGGCTATGTGCTGGAAT
* * * *
23585254 TATAACCGGACCTAAGGTCTGCAGGCTACGTGCTGGAA
1 TATATCTGGACTTAAGGTCTGCAGGCTATGTGCTGGAA
23585292 ATATGTCCGG
Statistics
Matches: 67, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
39 67 1.00
ACGTcount: A:0.26, C:0.20, G:0.26, T:0.28
Consensus pattern (39 bp):
TATATCTGGACTTAAGGTCTGCAGGCTATGTGCTGGAAT
Found at i:23585317 original size:39 final size:39
Alignment explanation
Indices: 23585197--23585335 Score: 129
Period size: 39 Copynumber: 3.6 Consensus size: 39
23585187 TTAAGGTCTA
* * *
23585197 CAGGCTATGTGCTGGAATTATATCTGGACTTAAG-CTCCG
1 CAGGCTACGTGCTGGAATTATATCCGGACTAAAGTC-CCG
* * * *
23585236 CAGGCTATGTGCTGGAATTATAACCGGACCTAAGGT-CTG
1 CAGGCTACGTGCTGGAATTATATCCGGA-CTAAAGTCCCG
* * *
23585275 CAGGCTACGTGCTGGAAATATGTCCGGGCTAAAGTCCCG
1 CAGGCTACGTGCTGGAATTATATCCGGACTAAAGTCCCG
* * *
23585314 CAGGCTTCGAGCTGGTATTATA
1 CAGGCTACGTGCTGGAATTATA
23585336 CCAGGTTTAA
Statistics
Matches: 80, Mismatches: 17, Indels: 6
0.78 0.17 0.06
Matches are distributed among these distances:
38 6 0.08
39 70 0.88
40 4 0.05
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.27
Consensus pattern (39 bp):
CAGGCTACGTGCTGGAATTATATCCGGACTAAAGTCCCG
Found at i:23585328 original size:78 final size:78
Alignment explanation
Indices: 23585188--23585335 Score: 183
Period size: 78 Copynumber: 1.9 Consensus size: 78
23585178 TATCTGAACT
* * * * *
23585188 TAAGGTCTACAGGCTATGTGCTGGAATTATATCTGGACTTAAGCTCCGCAGGCTATGTGCTGGAA
1 TAAGGTCTACAGGCTACGTGCTGGAAATATATCCGGACTAAAGCTCCGCAGGCTATGAGCTGGAA
23585253 TTATAACCGGACC
66 TTATAACCGGACC
* * *
23585266 TAAGGTCTGCAGGCTACGTGCTGGAAATATGTCCGGGCTAAAG-TCCCGCAGGCT-TCGAGCTGG
1 TAAGGTCTACAGGCTACGTGCTGGAAATATATCCGGACTAAAGCT-CCGCAGGCTAT-GAGCTGG
*
23585329 TATTATA
64 AATTATA
23585336 CCAGGTTTAA
Statistics
Matches: 59, Mismatches: 9, Indels: 4
0.82 0.12 0.06
Matches are distributed among these distances:
77 2 0.03
78 57 0.97
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (78 bp):
TAAGGTCTACAGGCTACGTGCTGGAAATATATCCGGACTAAAGCTCCGCAGGCTATGAGCTGGAA
TTATAACCGGACC
Found at i:23596458 original size:46 final size:46
Alignment explanation
Indices: 23596391--23596565 Score: 314
Period size: 46 Copynumber: 3.8 Consensus size: 46
23596381 TGTAACCCGC
* * * *
23596391 CCATAAGCGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23596437 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23596483 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
23596529 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
23596566 TGCTCAACCA
Statistics
Matches: 125, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 125 1.00
ACGTcount: A:0.30, C:0.29, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
Found at i:23599375 original size:15 final size:15
Alignment explanation
Indices: 23599348--23599391 Score: 54
Period size: 14 Copynumber: 2.9 Consensus size: 15
23599338 TATAGTATCG
23599348 TATCTTGGGATTTCTC
1 TATCTT-GGATTTCTC
*
23599364 TATCTTGGATTTCTT
1 TATCTTGGATTTCTC
*
23599379 TA-CTTGGTTTTCT
1 TATCTTGGATTTCT
23599392 TGTTATCTTT
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
14 10 0.38
15 10 0.38
16 6 0.23
ACGTcount: A:0.11, C:0.16, G:0.16, T:0.57
Consensus pattern (15 bp):
TATCTTGGATTTCTC
Found at i:23602103 original size:50 final size:50
Alignment explanation
Indices: 23602031--23602270 Score: 306
Period size: 50 Copynumber: 4.8 Consensus size: 50
23602021 TGCTAGGGAG
* * * *
23602031 ATATGAGAGCTAGTGTAAGACCATGTTTGGGACATAGCATCGAC-CTCGAG
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACAC-CGAT
*
23602081 ATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACACCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACACCGAT
* *
23602131 AGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACACCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACACCGAT
* * **
23602181 AGATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGC-CTCGAT
1 ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACAC-CGAT
** *
23602231 ATACCAGAGTCT-GTGTAAGACCACGTCTGGGACATGGCAT
1 ATATGAGAG-CTAGTGTAAGACCATGTCTGGGACATGGCAT
23602271 TGACTATGAT
Statistics
Matches: 172, Mismatches: 15, Indels: 6
0.89 0.08 0.03
Matches are distributed among these distances:
49 1 0.01
50 169 0.98
51 2 0.01
ACGTcount: A:0.30, C:0.21, G:0.28, T:0.21
Consensus pattern (50 bp):
ATATGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCAACACCGAT
Found at i:23602206 original size:100 final size:100
Alignment explanation
Indices: 23602033--23602314 Score: 315
Period size: 100 Copynumber: 2.8 Consensus size: 100
23602023 CTAGGGAGAT
* * * * * * *
23602033 ATGAGAGCTAGTGTAAGACCATGTTTGGGACATAGCATCGAC-CTCGAGATACGAGAGCTAGTGT
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACAC-CGATAGATGAGAGCCAGTGT
23602097 AAGACCATGTCTGGGACATGGCATCAACAC-CGATAG
65 AAGACCATGTCTGGGACATGGCATCAAC-CTCGATAG
*
23602133 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCAACACCGATAGATGAGAGCCAGTGTA
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTA
** *
23602198 AGACCATGTCTGGGACATGGCATCGGCCTCGATAT
66 AGACCATGTCTGGGACATGGCATCAACCTCGATAG
** * * * * *
23602233 ACCAGAGTCTGTGTAAGACCACGTCTGGGACATGGCATTGACTA-TGAT-G-TGTA-AGCCAGTG
1 ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGAC-ACCGATAGATG-AGAGCCAGTG
*
23602294 TAAGACCATGTCTTGGACATG
64 TAAGACCATGTCTGGGACATG
23602315 CGTTGGCACA
Statistics
Matches: 158, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
98 30 0.19
99 3 0.02
100 123 0.78
101 2 0.01
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (100 bp):
ATGAGAGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACACCGATAGATGAGAGCCAGTGTA
AGACCATGTCTGGGACATGGCATCAACCTCGATAG
Found at i:23622293 original size:16 final size:16
Alignment explanation
Indices: 23622274--23622304 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
23622264 CTTCTTCACT
23622274 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
23622290 TACTTACTTACTTAA
1 TACTCACTTACTTAA
23622305 TCAAATTTAC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:23622310 original size:20 final size:20
Alignment explanation
Indices: 23622271--23622310 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
23622261 AAACTTCTTC
* *
23622271 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
23622291 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
23622311 TTACTAGTAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:23622553 original size:49 final size:49
Alignment explanation
Indices: 23622496--23622629 Score: 196
Period size: 49 Copynumber: 2.7 Consensus size: 49
23622486 AAACGGGTAC
* ***
23622496 CTTACCATTTCCATGACTTTTCATGGTATTACATGGTATCCTTTTTAAA
1 CTTACCATTGCCATGACTCGACATGGTATTACATGGTATCCTTTTTAAA
* *
23622545 CTTACCATTGCCATGTCTCGACATGGTCTTACATGGTATCCTTTTTAAA
1 CTTACCATTGCCATGACTCGACATGGTATTACATGGTATCCTTTTTAAA
* *
23622594 CTTACCATTGCCATGTCTCGACATGGTCTTACATGG
1 CTTACCATTGCCATGACTCGACATGGTATTACATGG
23622630 GACCTTTGCC
Statistics
Matches: 79, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
49 79 1.00
ACGTcount: A:0.22, C:0.24, G:0.14, T:0.40
Consensus pattern (49 bp):
CTTACCATTGCCATGACTCGACATGGTATTACATGGTATCCTTTTTAAA
Found at i:23622663 original size:55 final size:54
Alignment explanation
Indices: 23622517--23622746 Score: 243
Period size: 55 Copynumber: 4.4 Consensus size: 54
23622507 CATGACTTTT
* *
23622517 CATGGTATTACATGGTATCCTT---TTTA--AACTTACCATTGCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTGCCTTTAGTAACTTACAATTGCCATGTCTCGA
*
23622566 CATGGTCTTACATGGTATCCTT---TTTA--AACTTACCATTGCCATGTCTCGA
1 CATGGTCTTACATGGTATCCTTGCCTTTAGTAACTTACAATTGCCATGTCTCGA
* *
23622615 CATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTTATCAATT-CCATGTCTTGA
1 CATGGTCTTACATGGTATCC-TTGCCTT-TAGTAACTTA-CAATTGCCATGTCTCGA
* * *
23622670 CATGGTCTTACATGGTATCCTTGCC-TTAGTAACCTTACCAATTGCCATGCCTTGG
1 CATGGTCTTACATGGTATCCTTGCCTTTAGTAA-CTTA-CAATTGCCATGTCTCGA
*
23622725 CCTGGTCTTACATGGTATCCTT
1 CATGGTCTTACATGGTATCCTT
23622747 AAACCCTAAT
Statistics
Matches: 161, Mismatches: 9, Indels: 16
0.87 0.05 0.09
Matches are distributed among these distances:
48 2 0.01
49 66 0.41
52 2 0.01
53 8 0.05
54 10 0.06
55 67 0.42
56 6 0.04
ACGTcount: A:0.22, C:0.24, G:0.16, T:0.38
Consensus pattern (54 bp):
CATGGTCTTACATGGTATCCTTGCCTTTAGTAACTTACAATTGCCATGTCTCGA
Found at i:23629802 original size:55 final size:52
Alignment explanation
Indices: 23629602--23629807 Score: 207
Period size: 55 Copynumber: 3.8 Consensus size: 52
23629592 ATCCTTTTGA
* ** * *
23629602 AACTTACCATTGCCATATCTCGACATGGTCTTACATGGTATCCTTGCCTTAT
1 AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAT
* * *
23629654 GAACTCACCAATGCCATGCCTTGGCATGGTCTTACGTGGGA-CCTTTGCCTTAT
1 -AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCC-TTGCCTTAT
* * *
23629707 AGTAGCTTATCAATGCCATGTCTTTGACATGGTCTTACATGGTATCCTTGCCTTAGT
1 A--A-CTTACCAATGCCATG-CCTTGGCATGGTCTTACATGGTATCCTTGCCTTA-T
* *
23629764 AACCTTACCAATTTCCATGCCTTGGCATGGTCATACATGGTATC
1 AA-CTTACCAA-TGCCATGCCTTGGCATGGTCTTACATGGTATC
23629808 TTGAAACCCT
Statistics
Matches: 125, Mismatches: 20, Indels: 14
0.79 0.13 0.09
Matches are distributed among these distances:
52 3 0.02
53 41 0.33
54 1 0.01
55 43 0.34
56 33 0.26
57 4 0.03
ACGTcount: A:0.22, C:0.26, G:0.18, T:0.34
Consensus pattern (52 bp):
AACTTACCAATGCCATGCCTTGGCATGGTCTTACATGGTATCCTTGCCTTAT
Found at i:23630281 original size:153 final size:153
Alignment explanation
Indices: 23630101--23630408 Score: 598
Period size: 153 Copynumber: 2.0 Consensus size: 153
23630091 ATAATAACAA
23630101 ATTTATATTATTTAATACTAACATTTTTTAAAACAGTCCTTAACTCAAACTTTGACAAAATTACA
1 ATTTATATTATTTAATACTAACATTTTTTAAAACAGTCCTTAACTCAAACTTTGACAAAATTACA
23630166 CTTTACCCCTAAACTTTTACATATTTACACTTTTTCCCCAAGGCTCAGAAATTAAACTTCATCCT
66 CTTTACCCCTAAACTTTTACATATTTACACTTTTTCCCCAAGGCTCAGAAATTAAACTTCATCCT
*
23630231 ATTTTCTTATGTTTTATGACATG
131 ATTTTATTATGTTTTATGACATG
23630254 ATTTATATTATTTAATACTAACATTTTTTAAAACAGTCCTTAACTCAAACTTTGACAAAATTACA
1 ATTTATATTATTTAATACTAACATTTTTTAAAACAGTCCTTAACTCAAACTTTGACAAAATTACA
23630319 CTTTACCCCTAAACTTTTACATATTTACACTTTTTCCCCAAGGCTCAGAAATTAAACTTCATCCT
66 CTTTACCCCTAAACTTTTACATATTTACACTTTTTCCCCAAGGCTCAGAAATTAAACTTCATCCT
*
23630384 ATTTTATTTTGTTTTATGACATG
131 ATTTTATTATGTTTTATGACATG
23630407 AT
1 AT
23630409 GATCATTTTT
Statistics
Matches: 153, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
153 153 1.00
ACGTcount: A:0.33, C:0.20, G:0.05, T:0.42
Consensus pattern (153 bp):
ATTTATATTATTTAATACTAACATTTTTTAAAACAGTCCTTAACTCAAACTTTGACAAAATTACA
CTTTACCCCTAAACTTTTACATATTTACACTTTTTCCCCAAGGCTCAGAAATTAAACTTCATCCT
ATTTTATTATGTTTTATGACATG
Found at i:23637208 original size:13 final size:13
Alignment explanation
Indices: 23637190--23637214 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23637180 CGAACAAAGA
23637190 CGACACGGCCGTG
1 CGACACGGCCGTG
23637203 CGACACGGCCGT
1 CGACACGGCCGT
23637215 CTGCACCAAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.40, G:0.36, T:0.08
Consensus pattern (13 bp):
CGACACGGCCGTG
Found at i:23638198 original size:216 final size:216
Alignment explanation
Indices: 23637800--23638230 Score: 729
Period size: 216 Copynumber: 2.0 Consensus size: 216
23637790 AAATTAATCG
* * *
23637800 TTTTTGATTTAGTTTTCTAGTAGTTATGACTAAGATTATTAATTTTAATTTATTACTTTTTCCTT
1 TTTTTGATTTAGTTTGCTAGTAGTTATGACTAAGATTATTAATTTTAATTTATTACATTTGCCTT
*
23637865 TTAAATTTGTTTTCATCTTACCTTGAACATTCATCACGAAAAATTAATGGTTTTGCTTACAGGTA
66 TTAAAATTGTTTTCATCTTACCTTGAACATTCATCACGAAAAATTAATGGTTTTGCTTACAGGTA
* * * *
23637930 TACTATGTCGTCTTCACGAGGAAAGAAAGTCGTCGTCCCTACTTCGAAGAACAGGAAGGGATCAT
131 TACTATGTCGTCTTCACGAGGAAAGAAAGCCGCCATCCCTACTTCAAAGAACAGGAAGGGATCAT
*
23637995 CATCTTCCTCGGGTCCTATCA
196 CATCTTCCTCGGGTCATATCA
*
23638016 TTTTTTATTTAGTTTGCTAGTAGTTATGACTAAGATTATTAATTTTAATTTATTACATTTGCCTT
1 TTTTTGATTTAGTTTGCTAGTAGTTATGACTAAGATTATTAATTTTAATTTATTACATTTGCC-T
*
23638081 TTTAAAATTG-TTTCATCTTACCTTGAACATTCATCACGACAAATTAATGGTTTTGCTTACAGGT
65 TTTAAAATTGTTTTCATCTTACCTTGAACATTCATCACGAAAAATTAATGGTTTTGCTTACAGGT
* *
23638145 ATACTATGTCGTCTTCACGAGGAAAGAAAGCCGCCATCTCTATTTCAAAGAACAGGAAGGGATCA
130 ATACTATGTCGTCTTCACGAGGAAAGAAAGCCGCCATCCCTACTTCAAAGAACAGGAAGGGATCA
23638210 TCATCTTCCTCGGGTCATATC
195 TCATCTTCCTCGGGTCATATC
23638231 GCAGAAATTT
Statistics
Matches: 201, Mismatches: 13, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
216 191 0.95
217 10 0.05
ACGTcount: A:0.28, C:0.17, G:0.15, T:0.40
Consensus pattern (216 bp):
TTTTTGATTTAGTTTGCTAGTAGTTATGACTAAGATTATTAATTTTAATTTATTACATTTGCCTT
TTAAAATTGTTTTCATCTTACCTTGAACATTCATCACGAAAAATTAATGGTTTTGCTTACAGGTA
TACTATGTCGTCTTCACGAGGAAAGAAAGCCGCCATCCCTACTTCAAAGAACAGGAAGGGATCAT
CATCTTCCTCGGGTCATATCA
Found at i:23643940 original size:37 final size:36
Alignment explanation
Indices: 23643881--23643990 Score: 184
Period size: 37 Copynumber: 3.0 Consensus size: 36
23643871 AGCTCAGACG
* *
23643881 AAATCTCCACACGAAGTTATCGGGTCTTACCCGGAGA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGA-A
23643918 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
1 AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
23643954 ATAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
1 A-AATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
23643991 TATATTTCCA
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
36 2 0.03
37 68 0.97
ACGTcount: A:0.28, C:0.29, G:0.20, T:0.23
Consensus pattern (36 bp):
AAATCTCCACACGTAGTCATCGGGTCTTACCCGGAA
Found at i:23644191 original size:50 final size:50
Alignment explanation
Indices: 23644136--23644318 Score: 275
Period size: 50 Copynumber: 3.7 Consensus size: 50
23644126 CATCGCCTAC
23644136 ATATTTCACACTAG-CCATTCGGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATAT
* * *
23644186 ATATTTCACATTGACCATTCGGCTTTACCACATATGCATATCTC--ATAC
1 ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATAT
*
23644234 ATATTTCACATTAG-CCATTCAGCTTTACCACATATACATATCTCATATAT
1 ATATTTCACA-TAGACCATTCGGCTTTACCACATATACATATCTCATATAT
*
23644284 ATATTTCACATTGACCATTCGGCTTTACCACATAT
1 ATATTTCACATAGACCATTCGGCTTTACCACATAT
23644319 NNNNNNNNNN
Statistics
Matches: 119, Mismatches: 9, Indels: 10
0.86 0.07 0.07
Matches are distributed among these distances:
48 41 0.34
49 6 0.05
50 72 0.61
ACGTcount: A:0.31, C:0.26, G:0.07, T:0.37
Consensus pattern (50 bp):
ATATTTCACATAGACCATTCGGCTTTACCACATATACATATCTCATATAT
Found at i:23644260 original size:98 final size:98
Alignment explanation
Indices: 23644119--23644318 Score: 355
Period size: 98 Copynumber: 2.0 Consensus size: 98
23644109 CGGCCACAAT
* *
23644119 ATATGCACATCGCCTACATATTTCACACTAGCCATTCGGCTTTACCACATATACATATCTCATAT
1 ATATGCACATCGCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATAT
23644184 ATATATTTCACATTGACCATTCGGCTTTACCAC
66 ATATATTTCACATTGACCATTCGGCTTTACCAC
* * *
23644217 ATATGCATATCTCATACATATTTCACATTAGCCATTCAGCTTTACCACATATACATATCTCATAT
1 ATATGCACATCGCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATAT
23644282 ATATATTTCACATTGACCATTCGGCTTTACCAC
66 ATATATTTCACATTGACCATTCGGCTTTACCAC
23644315 ATAT
1 ATAT
23644319 NNNNNNNNNN
Statistics
Matches: 97, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 97 1.00
ACGTcount: A:0.31, C:0.27, G:0.07, T:0.35
Consensus pattern (98 bp):
ATATGCACATCGCATACATATTTCACACTAGCCATTCAGCTTTACCACATATACATATCTCATAT
ATATATTTCACATTGACCATTCGGCTTTACCAC
Found at i:23650931 original size:47 final size:47
Alignment explanation
Indices: 23650870--23651063 Score: 280
Period size: 47 Copynumber: 4.1 Consensus size: 47
23650860 CCTACATATT
* * * *
23650870 TCACATTAGCCATTCGGCTTTACCACATATATGCATGTTCATATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * * *
23650917 CCACATTGGCCATTCGGCCTTATCACACATATGTATGCTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
23650964 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
* * **
23651011 TCACATTGGCCATTCGGCCTTATCTCATATATACACATTCACATTCA
1 TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
23651058 TCACAT
1 TCACAT
23651064 AAAATCCTAA
Statistics
Matches: 131, Mismatches: 16, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
47 131 1.00
ACGTcount: A:0.27, C:0.29, G:0.11, T:0.34
Consensus pattern (47 bp):
TCACATTGGCCATTCGGCCTTATCACATATATGCATGTTCACATTCA
Found at i:23650990 original size:22 final size:22
Alignment explanation
Indices: 23650963--23651034 Score: 58
Period size: 22 Copynumber: 3.1 Consensus size: 22
23650953 GCTCACATTC
23650963 ATCACATTGGCCATTCGGCCTT
1 ATCACATTGGCCATTCGGCCTT
* * *
23650985 ATCACATATATG-CATGTTC-ACATT
1 ATCACAT-T-GGCCA--TTCGGCCTT
23651009 CATCACATTGGCCATTCGGCCTT
1 -ATCACATTGGCCATTCGGCCTT
23651032 ATC
1 ATC
23651035 TCATATATAC
Statistics
Matches: 37, Mismatches: 6, Indels: 14
0.65 0.11 0.25
Matches are distributed among these distances:
22 13 0.35
23 7 0.19
24 7 0.19
25 10 0.27
ACGTcount: A:0.24, C:0.29, G:0.14, T:0.33
Consensus pattern (22 bp):
ATCACATTGGCCATTCGGCCTT
Found at i:23651273 original size:13 final size:13
Alignment explanation
Indices: 23651255--23651279 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
23651245 TACTAAATTT
23651255 TCATGGATTCAAG
1 TCATGGATTCAAG
23651268 TCATGGATTCAA
1 TCATGGATTCAA
23651280 TATACCATTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (13 bp):
TCATGGATTCAAG
Found at i:23656909 original size:49 final size:47
Alignment explanation
Indices: 23656705--23656926 Score: 197
Period size: 46 Copynumber: 4.7 Consensus size: 47
23656695 CATTGGTTTG
* * * * *
23656705 AGCCAGTGTAAGACTATATTTGGGACATGGCATCGGCATTGAGACG-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGT
* *
23656751 AGTGCTAGTGTAAGA-CATGTCTGGGACAT-GCATTGGCCTCGAGACGT
1 A--GCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGT
* * *
23656798 AAGCCAGTGCAAGA-CATGTCTGGGACAT-TCATCGG-CTACGAGATGT
1 -AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCT-CGAGACGT
* * * * *
23656844 -GTCACTGTAAGACCATGTCTGGGACGTGGCATCAGCCTCGATGATGAT
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGA-GACG-T
*
23656892 AGCCAGTGTAAGACCATGTCCGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
23656927 ATAACTTACC
Statistics
Matches: 142, Mismatches: 23, Indels: 19
0.77 0.12 0.10
Matches are distributed among these distances:
44 9 0.06
45 15 0.11
46 59 0.42
47 17 0.12
48 13 0.09
49 29 0.20
ACGTcount: A:0.26, C:0.21, G:0.30, T:0.23
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCCTCGAGACGT
Found at i:23658852 original size:22 final size:23
Alignment explanation
Indices: 23658787--23658853 Score: 91
Period size: 23 Copynumber: 2.9 Consensus size: 23
23658777 AAGCTCCTCC
*
23658787 TGAGCTGATAAGCAGTATGCTCTAT
1 TGAGCTGA-AA-CAGTAAGCTCTAT
*
23658812 TGAGCTGAAACGGTAAGCTCTAT
1 TGAGCTGAAACAGTAAGCTCTAT
23658835 TGAGCTG-AACAGTAAGCTC
1 TGAGCTGAAACAGTAAGCTC
23658854 ATACCAGCTA
Statistics
Matches: 39, Mismatches: 3, Indels: 3
0.87 0.07 0.07
Matches are distributed among these distances:
22 11 0.28
23 18 0.46
24 2 0.05
25 8 0.21
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (23 bp):
TGAGCTGAAACAGTAAGCTCTAT
Found at i:23660536 original size:694 final size:694
Alignment explanation
Indices: 23659207--23660596 Score: 2602
Period size: 694 Copynumber: 2.0 Consensus size: 694
23659197 ACCGATCTAG
*
23659207 TTCCAAAATTTGCTTATATTGATCTTAATCAAGCCAAATATGTGCCAAAATCATGGAAGCTTCAA
1 TTCCAAAATTTGCTTATATTGATCTTAATCAAGCCAAAGATGTGCCAAAATCATGGAAGCTTCAA
*
23659272 ACCCTTATTTTTCTTTCTCAATTTCGGCAATATAGATGGAAGATGATGAATAAAATGATTTTGGT
66 ACCCTTATTTTTCTTTCTCAATTTCGGCAATATAAATGGAAGATGATGAATAAAATGATTTTGGT
*
23659337 TTTATTTATTGTTAACTTAATACATAAATTACTATATTAACCTTAGTAATAAAACATTTAAATCA
131 TTTATTTATTATTAACTTAATACATAAATTACTATATTAACCTTAGTAATAAAACATTTAAATCA
*
23659402 TCAAATATAAGGTTATCTATGTCAAGTTCCACTATCAATCGTCTAATAACATCTTAAGGACCTCT
196 TCAAATATAAGGTTATCTATGTCAAGTTCAACTATCAATCGTCTAATAACATCTTAAGGACCTCT
*
23659467 CATTTATTATGATTTAAACACCTTTAACAATTAGAACTCAACTTTTACGCATTACGCGATTTAGT
261 CATTTATTATGATTTAAACACCTTTAACAAGTAGAACTCAACTTTTACGCATTACGCGATTTAGT
23659532 CCTTTTTACCGAATTAAGCATTTAAACGGTAAAATTTCTTAACGAAATTTTCATATAATAATTCT
326 CCTTTTTACCGAATTAAGCATTTAAACGGTAAAATTTCTTAACGAAATTTTCATATAATAATTCT
23659597 ATCATGCTACAAACCCTAATAAAATAATAAAATAAAAAATTTAAACTCAAATTTATGATCCCAAA
391 ATCATGCTACAAACCCTAATAAAATAATAAAATAAAAAATTTAAACTCAAATTTATGATCCCAAA
23659662 ACCACTTTTTCAATTTGACATAAAAATAGACTGTTACAGAAATGGCTCAGTAAAAGTACTCAATT
456 ACCACTTTTTCAATTTGACATAAAAATAGACTGTTACAGAAATGGCTCAGTAAAAGTACTCAATT
23659727 TTAGTAAAGGATAAAAACCCATTTGTATCTTATTTTATTTAATCAATTTGATTGTCATTAAAAAA
521 TTAGTAAAGGATAAAAACCCATTTGTATCTTATTTTATTTAATCAATTTGATTGTCATTAAAAAA
*
23659792 CTAGAGTATGTTTCTAATGAGTTCTACCAAAATCTATATCTTTACGATTTGAAGTTGGTCTAGGG
586 CTAGAGTATGTTTCTAATGAGTTCTACCAAAATCTATATCTTTACGATTTGAAGTTGGTCTAAGG
23659857 ACTACATTGCTAGGTTTTAAGCCATTTGGAAACCAAATTTATTT
651 ACTACATTGCTAGGTTTTAAGCCATTTGGAAACCAAATTTATTT
23659901 TTCCAAAATTTGCTTATATTGATCTTAATCAAGCCAAAGATGTGCCAAAATCATGGAAGCTTCAA
1 TTCCAAAATTTGCTTATATTGATCTTAATCAAGCCAAAGATGTGCCAAAATCATGGAAGCTTCAA
23659966 ACCCTTATTTTTCTTTCTCAATTTCGGCAATATAAATGGAAGATGATGAATAAAATGATTTTGGT
66 ACCCTTATTTTTCTTTCTCAATTTCGGCAATATAAATGGAAGATGATGAATAAAATGATTTTGGT
23660031 TTTATTTATTATTAACTTAATACATAAATTACTATATTAACCTTAGTAATAAAACATTTAAATCA
131 TTTATTTATTATTAACTTAATACATAAATTACTATATTAACCTTAGTAATAAAACATTTAAATCA
23660096 TCAAATATAAGGTTATCTATGTCAAGTTCAACTATCAATCGTCTAATAACATCTTAAGGACCTCT
196 TCAAATATAAGGTTATCTATGTCAAGTTCAACTATCAATCGTCTAATAACATCTTAAGGACCTCT
*
23660161 TATTTATTATGATTTAAACACCTTTAACAAGTAGAACTCAACTTTTACGCATTACGCGATTTAGT
261 CATTTATTATGATTTAAACACCTTTAACAAGTAGAACTCAACTTTTACGCATTACGCGATTTAGT
* *
23660226 CCTTTTTACCGAATTAAGCATTTAAATGGTAAAATTTTTTAACGAAATTTTCATATAATAATTCT
326 CCTTTTTACCGAATTAAGCATTTAAACGGTAAAATTTCTTAACGAAATTTTCATATAATAATTCT
** * * *
23660291 ATCATGCTGTAAACCCTATTAAAATAATAAAATGAAAAATTTAACCTCAAATTTATGATCCCAAA
391 ATCATGCTACAAACCCTAATAAAATAATAAAATAAAAAATTTAAACTCAAATTTATGATCCCAAA
* *
23660356 ACTACTTTTTCAATTTGACATAAAAA-CGCACTGTTACAGAAATGGCTCAGTAAAAGTACTCAAT
456 ACCACTTTTTCAATTTGACATAAAAATAG-ACTGTTACAGAAATGGCTCAGTAAAAGTACTCAAT
23660420 TTTAGTAAAGGATAAAAACCCATTTGTATCTTATTTTATTTAATCAATTTGATTGTCATTAAAAA
520 TTTAGTAAAGGATAAAAACCCATTTGTATCTTATTTTATTTAATCAATTTGATTGTCATTAAAAA
* *
23660485 AGTAGAGTATGTTTCTAATGAGTTCTACCAAAATCTTTATCTTTACGATTTGAAGTTGGTCTAAG
585 ACTAGAGTATGTTTCTAATGAGTTCTACCAAAATCTATATCTTTACGATTTGAAGTTGGTCTAAG
23660550 GACTACATTGCTAGGTTTTAAGCCATTTGGAAACCAAATTTATTT
650 GACTACATTGCTAGGTTTTAAGCCATTTGGAAACCAAATTTATTT
23660595 TT
1 TT
23660597 TAGTTGAAAT
Statistics
Matches: 677, Mismatches: 18, Indels: 2
0.97 0.03 0.00
Matches are distributed among these distances:
693 1 0.00
694 676 1.00
ACGTcount: A:0.37, C:0.15, G:0.11, T:0.37
Consensus pattern (694 bp):
TTCCAAAATTTGCTTATATTGATCTTAATCAAGCCAAAGATGTGCCAAAATCATGGAAGCTTCAA
ACCCTTATTTTTCTTTCTCAATTTCGGCAATATAAATGGAAGATGATGAATAAAATGATTTTGGT
TTTATTTATTATTAACTTAATACATAAATTACTATATTAACCTTAGTAATAAAACATTTAAATCA
TCAAATATAAGGTTATCTATGTCAAGTTCAACTATCAATCGTCTAATAACATCTTAAGGACCTCT
CATTTATTATGATTTAAACACCTTTAACAAGTAGAACTCAACTTTTACGCATTACGCGATTTAGT
CCTTTTTACCGAATTAAGCATTTAAACGGTAAAATTTCTTAACGAAATTTTCATATAATAATTCT
ATCATGCTACAAACCCTAATAAAATAATAAAATAAAAAATTTAAACTCAAATTTATGATCCCAAA
ACCACTTTTTCAATTTGACATAAAAATAGACTGTTACAGAAATGGCTCAGTAAAAGTACTCAATT
TTAGTAAAGGATAAAAACCCATTTGTATCTTATTTTATTTAATCAATTTGATTGTCATTAAAAAA
CTAGAGTATGTTTCTAATGAGTTCTACCAAAATCTATATCTTTACGATTTGAAGTTGGTCTAAGG
ACTACATTGCTAGGTTTTAAGCCATTTGGAAACCAAATTTATTT
Found at i:23663400 original size:140 final size:139
Alignment explanation
Indices: 23663133--23663408 Score: 482
Period size: 140 Copynumber: 2.0 Consensus size: 139
23663123 CTCCAATCCC
23663133 TTGGGTTAGGCTCAAAAATAATAAAAGGGGGTGAATTGGTATCTTAGAAATATTTGAAACTTTTC
1 TTGGGTTAGGCTCAAAAATAATAAAAGGGGGTGAATTGGTATCTTAGAAATATTTGAAACTTTTC
* * *
23663198 CAAATGATAAGGAAACGAAAGAAAAAATTGGACAATTCAATTTTTAGTGGTTTGGCTTCAATTGT
66 CAAATGATAAGGAAACGAAAGAAAAAATTGGACAATCCAATTTTTAGTGGTTTGGCTCCAATTCT
23663263 CTACCTCCA
131 CTACCTCCA
23663272 TTGGGTTAGGCTCAAAAATAATAAAAGGGGGTGAATTGGTATCTTAGAAATATTTGGAAACTTTT
1 TTGGGTTAGGCTCAAAAATAATAAAAGGGGGTGAATTGGTATCTTAGAAATATTT-GAAACTTTT
* *
23663337 CCAAATGATAAGGAAAC-AGAAGAAAAATTTGGACAATCCGATTTTTAGTGGTTTGGCTCCAATT
65 CCAAATGATAAGGAAACGA-AAGAAAAAATTGGACAATCCAATTTTTAGTGGTTTGGCTCCAATT
23663401 CTCTACCT
129 CTCTACCT
23663409 TTACTACATT
Statistics
Matches: 130, Mismatches: 5, Indels: 3
0.94 0.04 0.02
Matches are distributed among these distances:
139 56 0.43
140 74 0.57
ACGTcount: A:0.36, C:0.12, G:0.21, T:0.32
Consensus pattern (139 bp):
TTGGGTTAGGCTCAAAAATAATAAAAGGGGGTGAATTGGTATCTTAGAAATATTTGAAACTTTTC
CAAATGATAAGGAAACGAAAGAAAAAATTGGACAATCCAATTTTTAGTGGTTTGGCTCCAATTCT
CTACCTCCA
Found at i:23674338 original size:47 final size:47
Alignment explanation
Indices: 23674287--23677951 Score: 7023
Period size: 47 Copynumber: 77.7 Consensus size: 47
23674277 TTAGGATTCT
* * *
23674287 ATGTGATGGATGTGAACA-TGCATATATGAGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCTAATGGCCG
23674334 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
23674381 ATGTGAGGAATGTGAAAGTGTATACATAGGTGATAAGGCCTAATAGCCG
1 ATGTGATGAATGTGAAAGTGTAT--ATATGTGATAAGGCCTAATGGCCG
23674430 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674477 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674524 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674571 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674618 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674665 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674712 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
23674761 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
23674808 ATGTGATGAATGTGAAA--G-ATATATGTGATAAGGCCTAATGACCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674852 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674899 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674946 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23674993 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675040 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675087 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675134 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675181 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675228 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675275 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675322 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675369 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675416 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675463 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675510 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
*
23675557 ATGTGATGAATGTGAAAGAGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTG-AA-AGTGTATATATGTGATAAGGCCTAATGGCCG
23675606 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675653 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675700 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675747 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675794 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675841 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675888 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675935 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23675982 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676029 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676076 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
23676125 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676172 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
23676221 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676268 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676315 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676362 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676409 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676456 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676503 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676550 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676597 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676644 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676691 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676738 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676785 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676832 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676879 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676926 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23676973 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677020 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677067 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677114 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677161 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677208 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677255 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677302 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677349 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677396 ATGTGATGAATGTGAAAGTGTATATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTG--TATATATGTGATAAGGCCTAATGGCCG
23677445 ATGTGATGAATGTGAAAGTGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAA--GTGTATATATGTGATAAGGCCTAATGGCCG
23677494 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677541 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677588 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677635 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677682 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677729 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677776 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
23677823 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * * * *
23677870 ATGTGATGAATGTGAAAGTGTATATATGTGACAGGGCCGAGTGGCCA
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
* * *
23677917 ACGTGATGGATGTGAAAGTGTATAAATGTGATAAG
1 ATGTGATGAATGTGAAAGTGTATATATGTGATAAG
23677952 TCCCGAAGGG
Statistics
Matches: 3577, Mismatches: 23, Indels: 36
0.98 0.01 0.01
Matches are distributed among these distances:
44 42 0.01
45 1 0.00
46 2 0.00
47 3208 0.90
48 4 0.00
49 317 0.09
51 3 0.00
ACGTcount: A:0.32, C:0.09, G:0.30, T:0.30
Consensus pattern (47 bp):
ATGTGATGAATGTGAAAGTGTATATATGTGATAAGGCCTAATGGCCG
Found at i:23674855 original size:22 final size:22
Alignment explanation
Indices: 23674786--23674858 Score: 60
Period size: 22 Copynumber: 3.3 Consensus size: 22
23674776 AAGTGTATAT
*
23674786 ATGTGATAAGGCCTAATGGCCG
1 ATGTGATAAGGCCTAATGACCG
* * ***
23674808 ATGTGATGAATG--TGAAAGATAT
1 ATGTGAT-AAGGCCT-AATGACCG
23674830 ATGTGATAAGGCCTAATGACCG
1 ATGTGATAAGGCCTAATGACCG
23674852 ATGTGAT
1 ATGTGAT
23674859 GAATGTGAAA
Statistics
Matches: 36, Mismatches: 11, Indels: 8
0.65 0.20 0.15
Matches are distributed among these distances:
21 4 0.11
22 28 0.78
23 4 0.11
ACGTcount: A:0.33, C:0.11, G:0.29, T:0.27
Consensus pattern (22 bp):
ATGTGATAAGGCCTAATGACCG
Found at i:23678126 original size:37 final size:37
Alignment explanation
Indices: 23678070--23678148 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
23678060 CCGAGCTCTA
* * *
23678070 AAGACCCGATGACTACGTGTGGGGATTTTGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
*
23678107 AAGACCCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
23678144 AAGAC
1 AAGAC
23678149 TTCGTAATAA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.24, C:0.19, G:0.32, T:0.25
Consensus pattern (37 bp):
AAGACCCGATAACTACGTGTGGAGATTATGTCCGGGT
Found at i:23679056 original size:87 final size:87
Alignment explanation
Indices: 23678902--23679143 Score: 299
Period size: 87 Copynumber: 2.8 Consensus size: 87
23678892 GGGTGTTACA
* * *
23678902 GACGACCATCGAATATGAAAAGGGATAGTTTCAACTA-CAGGCTACGGAAAGGGATGGTGACGAC
1 GACGACCATCGAATATGAAAAGGGATAGTATCAACTATC-GACTACGAAAAGGGATGGTGACGAC
*
23678966 CATCAACTACGAAAAGGGATGGT
65 CATCAACTACGAAAAAGGATGGT
* * * *
23678989 GATGACCATCGAATATGAAAAGGGATAGTATCGACTATCGACTATGAAAAGGGATGGTGACGGCC
1 GACGACCATCGAATATGAAAAGGGATAGTATCAACTATCGACTACGAAAAGGGATGGTGACGACC
*
23679054 ATCAACTATGAAAAAGGATGGT
66 ATCAACTACGAAAAAGGATGGT
* * ** * * * *
23679076 GACAACAATTAAATATGAAAAGGGATGGTGA-CAACCATCGAATACGAAAAGGGATGGTTACGAC
1 GACGACCATCGAATATGAAAAGGGATAGT-ATCAACTATCGACTACGAAAAGGGATGGTGACGAC
23679140 CATC
65 CATC
23679144 GTTAGCACAT
Statistics
Matches: 132, Mismatches: 21, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
87 130 0.98
88 2 0.02
ACGTcount: A:0.39, C:0.16, G:0.27, T:0.19
Consensus pattern (87 bp):
GACGACCATCGAATATGAAAAGGGATAGTATCAACTATCGACTACGAAAAGGGATGGTGACGACC
ATCAACTACGAAAAAGGATGGT
Found at i:23679144 original size:29 final size:29
Alignment explanation
Indices: 23678949--23679144 Score: 218
Period size: 29 Copynumber: 6.8 Consensus size: 29
23678939 CAGGCTACGG
*
23678949 AAAGGGATGGTGACGACCATC-AACTACGA
1 AAAGGGATGGTGACGACCATCGAA-TATGA
*
23678978 AAAGGGATGGTGATGACCATCGAATATGA
1 AAAGGGATGGTGACGACCATCGAATATGA
* * *
23679007 AAAGGGATAGT-ATCGACTATCGACTATGA
1 AAAGGGATGGTGA-CGACCATCGAATATGA
*
23679036 AAAGGGATGGTGACGGCCATC-AACTATGA
1 AAAGGGATGGTGACGACCATCGAA-TATGA
* * * **
23679065 AAAAGGATGGTGACAACAATTAAATATGA
1 AAAGGGATGGTGACGACCATCGAATATGA
* *
23679094 AAAGGGATGGTGACAACCATCGAATACGA
1 AAAGGGATGGTGACGACCATCGAATATGA
*
23679123 AAAGGGATGGTTACGACCATCG
1 AAAGGGATGGTGACGACCATCG
23679145 TTAGCACATT
Statistics
Matches: 140, Mismatches: 22, Indels: 10
0.81 0.13 0.06
Matches are distributed among these distances:
28 2 0.01
29 133 0.95
30 5 0.04
ACGTcount: A:0.39, C:0.15, G:0.28, T:0.18
Consensus pattern (29 bp):
AAAGGGATGGTGACGACCATCGAATATGA
Found at i:23680699 original size:23 final size:23
Alignment explanation
Indices: 23680663--23680724 Score: 70
Period size: 23 Copynumber: 2.7 Consensus size: 23
23680653 TATTTGGGAG
* * * *
23680663 AAGAGGCAACCAAGGGAACTACC
1 AAGAGGAAATCAAGGAAACCACC
*
23680686 AAGAGGAAATCAAGGAAACCACT
1 AAGAGGAAATCAAGGAAACCACC
*
23680709 AGGAGGAAATCAAGGA
1 AAGAGGAAATCAAGGA
23680725 TACATGGGAC
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.48, C:0.18, G:0.27, T:0.06
Consensus pattern (23 bp):
AAGAGGAAATCAAGGAAACCACC
Found at i:23688625 original size:28 final size:28
Alignment explanation
Indices: 23688593--23688676 Score: 74
Period size: 28 Copynumber: 3.2 Consensus size: 28
23688583 AACTGTGATC
23688593 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
* * **
23688621 ACGTGTATCAG-A-T-GGT-TTGG-T-C-
1 ACGTGTGT-AGTACTAAGTGCAGGCTACT
23688643 ACGTGTGTAGTACTAAGTGCAGGCTACT
1 ACGTGTGTAGTACTAAGTGCAGGCTACT
23688671 ACGTGT
1 ACGTGT
23688677 ACCGGATAAT
Statistics
Matches: 40, Mismatches: 8, Indels: 16
0.62 0.12 0.25
Matches are distributed among these distances:
21 2 0.05
22 8 0.20
23 2 0.05
24 3 0.08
25 4 0.10
26 3 0.08
27 2 0.05
28 14 0.35
29 2 0.05
ACGTcount: A:0.23, C:0.17, G:0.30, T:0.31
Consensus pattern (28 bp):
ACGTGTGTAGTACTAAGTGCAGGCTACT
Found at i:23688666 original size:50 final size:50
Alignment explanation
Indices: 23688545--23688768 Score: 294
Period size: 50 Copynumber: 4.5 Consensus size: 50
23688535 TGAGGTCGCA
* * * * *
23688545 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCA-AAAACTGTGATCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTA-CCAGATAA-TTTGGTCACG
* **
23688596 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTTGGTCACG
*
23688646 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTT-GTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTTGGTCACG
* *
23688695 TGTGTAGTACTAAGTGCAGGCTACTA-GTGTACCAGATAA-TTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTTGGTCACG
*
23688743 TGTGTAGTACTATGTGCAGGCTACTA
1 TGTGTAGTACTAAGTGCAGGCTACTA
23688769 TGCATACCAG
Statistics
Matches: 155, Mismatches: 16, Indels: 7
0.87 0.09 0.04
Matches are distributed among these distances:
47 2 0.01
48 41 0.26
49 32 0.21
50 49 0.32
51 31 0.20
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (50 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTTGGTCACG
Found at i:23688720 original size:99 final size:99
Alignment explanation
Indices: 23688538--23688768 Score: 313
Period size: 101 Copynumber: 2.3 Consensus size: 99
23688528 TCTATTGTGA
* *
23688538 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGATCACGTGTGTAG
* **
23688603 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTT
66 TACTAAGTGCAGGCTACTA-GTGTACCAGAT-AATT
* * ** * *
23688639 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAA-TTTG-TCACGTGTGTAG
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGATCACGTGTGTAG
23688702 TACTAAGTGCAGGCTACTAGTGTACCAGATAATT
66 TACTAAGTGCAGGCTACTAGTGTACCAGATAATT
* *
23688736 GGTCGCATGTGTAGTACTATGTGCAGGCTACTA
1 GGTCACATGTGTAGTACTAAGTGCAGGCTACTA
23688769 TGCATACCAG
Statistics
Matches: 116, Mismatches: 14, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
97 32 0.28
98 10 0.09
99 31 0.27
100 3 0.03
101 40 0.34
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.29
Consensus pattern (99 bp):
GGTCACATGTGTAGTACTAAGTGCAGGCTACTACGCGTACCCAAAAACTGTGATCACGTGTGTAG
TACTAAGTGCAGGCTACTAGTGTACCAGATAATT
Found at i:23688814 original size:99 final size:99
Alignment explanation
Indices: 23688538--23688787 Score: 333
Period size: 97 Copynumber: 2.5 Consensus size: 99
23688528 TCTATTGTGA
* * *
23688538 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCAAAAACTGTGATCACGTGTGTAG
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTA-CCAGATACTTTG-TCACGTGTGTAG
* **
23688603 TACTAAGTGCAGGCTACTACGTGTATCAGATGGTTT
64 TACTAAGTGCAGGCTACTACGTGTACCAGATGAATT
* * * * * *
23688639 GGTCACGTGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTTGTCACGTGTGTAGTA
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTTGTCACGTGTGTAGTA
23688704 CTAAGTGCAGGCTACTA-GTGTACCAGAT-AATT
66 CTAAGTGCAGGCTACTACGTGTACCAGATGAATT
* *
23688736 GGTCGCATGTGTAGTACTATGTGCAGGCTACTATGCATACCAGATAGCTTTG
1 GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATA-CTTTG
23688788 GTTACAAGTG
Statistics
Matches: 128, Mismatches: 20, Indels: 5
0.84 0.13 0.03
Matches are distributed among these distances:
97 41 0.32
98 14 0.11
99 31 0.24
100 7 0.05
101 35 0.27
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (99 bp):
GGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAGATACTTTGTCACGTGTGTAGTA
CTAAGTGCAGGCTACTACGTGTACCAGATGAATT
Found at i:23691619 original size:277 final size:277
Alignment explanation
Indices: 23691124--23691658 Score: 930
Period size: 277 Copynumber: 1.9 Consensus size: 277
23691114 CTAGAAAAGT
* * * *
23691124 ATCAGATTGGCATAAGGATTATTGGAGTTATGCACTGTTCCAGTTAGAGAAGAAATTTATTTTGA
1 ATCAGATTGGCATAAGGATTATTGGAGCTATGCACTGTCCCAGTTAAAGAAGAAATTTACTTTGA
*
23691189 TAAATCGAATTACTAAGGTACAAGGTCGAGAAAAGTGCAAATCAAAATTTATTCAGAACTAGTCT
66 TAAATCGAATTACTAAGATACAAGGTCGAGAAAAGTGCAAATCAAAATTTATTCAGAACTAGTCT
*
23691254 TCTTTAGTGAAAAGTAATATGAAATTTGTGATGGCAGAAATAGTTGGGGAAATGATATCTGGAAT
131 TCTTTAGTGAAAAGTAATATGAAATTTGTGATGGCAGAAATAGTTGGGGAAATGATATCTGAAAT
*
23691319 GTATAATATTTGAGTGTGACAGTTACGGCTAGACAGATTTTAGTAGTTTCTTCTAAGATAGTTCA
196 GTATAATATCTGAGTGTGACAGTTACGGCTAGACAGATTTTAGTAGTTTCTTCTAAGAT-GTTCA
23691384 GTGCTAGAATAATTATAA
260 GTGCTAGAATAATTATAA
23691402 ATCAGATTGGCATAAGGATTATTGGAGCTATGCACTGTCCCAGTTAAAGAATG-AATTTACTTTG
1 ATCAGATTGGCATAAGGATTATTGGAGCTATGCACTGTCCCAGTTAAAGAA-GAAATTTACTTTG
* * * *
23691466 GTAAATTGAATTACTTAGATACAA-GTCGAGAAAAGTGTAAATCAAAATTTATTCAGAACTAGTC
65 ATAAATCGAATTACTAAGATACAAGGTCGAGAAAAGTGCAAATCAAAATTTATTCAGAACTAGTC
23691530 TTCTTTAGTGAAAAGTAATATGAAATTTGTGATGGCAGAAATAGTTGGGGAAATGATATCTGAAA
130 TTCTTTAGTGAAAAGTAATATGAAATTTGTGATGGCAGAAATAGTTGGGGAAATGATATCTGAAA
*
23691595 TGTGTAATATCTGAGTGTGACAGTTACGGCTAGACAGATTTTAGTAGTTTCTTCTAAGATGTTC
195 TGTATAATATCTGAGTGTGACAGTTACGGCTAGACAGATTTTAGTAGTTTCTTCTAAGATGTTC
23691659 TATGTGTTTA
Statistics
Matches: 244, Mismatches: 12, Indels: 4
0.94 0.05 0.02
Matches are distributed among these distances:
276 4 0.02
277 161 0.66
278 78 0.32
279 1 0.00
ACGTcount: A:0.35, C:0.10, G:0.21, T:0.33
Consensus pattern (277 bp):
ATCAGATTGGCATAAGGATTATTGGAGCTATGCACTGTCCCAGTTAAAGAAGAAATTTACTTTGA
TAAATCGAATTACTAAGATACAAGGTCGAGAAAAGTGCAAATCAAAATTTATTCAGAACTAGTCT
TCTTTAGTGAAAAGTAATATGAAATTTGTGATGGCAGAAATAGTTGGGGAAATGATATCTGAAAT
GTATAATATCTGAGTGTGACAGTTACGGCTAGACAGATTTTAGTAGTTTCTTCTAAGATGTTCAG
TGCTAGAATAATTATAA
Found at i:23692075 original size:15 final size:14
Alignment explanation
Indices: 23692050--23692112 Score: 63
Period size: 15 Copynumber: 4.2 Consensus size: 14
23692040 CATAGTATCG
23692050 TATCTTGGGTTTCTT
1 TATC-TGGGTTTCTT
23692065 TACTCTGGGTTTCTT
1 TA-TCTGGGTTTCTT
* *
23692080 TATTCTGTGTTTCTC
1 TA-TCTGGGTTTCTT
*
23692095 TATCTTGGATTTCTT
1 TATC-TGGGTTTCTT
23692110 TAT
1 TAT
23692113 TCGGTTTTCT
Statistics
Matches: 40, Mismatches: 6, Indels: 4
0.80 0.12 0.08
Matches are distributed among these distances:
14 2 0.05
15 36 0.90
16 2 0.05
ACGTcount: A:0.10, C:0.16, G:0.16, T:0.59
Consensus pattern (14 bp):
TATCTGGGTTTCTT
Found at i:23706133 original size:125 final size:125
Alignment explanation
Indices: 23705911--23706157 Score: 413
Period size: 125 Copynumber: 2.0 Consensus size: 125
23705901 AAGGCAATGC
*
23705911 TTTTGTTTCTCAATTGTTTAACTTCTCGTGCCAAAATCTTAACTTGCTCCTCACCATAAGTCATA
1 TTTTGTTTCTCAATTGTTTAACTTCTCGTGCCAAAATCTTAACCTGCTCCTCACCATAAGTCATA
*
23705976 TCCGGTCGAATCTCAACTGCTGTCAATGAAATCACATGTGAAGGATCTGATGTATATCGG
66 TCCGGTCGAATCTCAACTGCTGTCAATGAAATCACATGTGAAGGATCTGATCTATATCGG
*
23706036 TTTTGTTTCTCAATTGTTTAACTTCTCGTGCCAAAATCTTAACCTGTTCCTCACCATAAGTCATA
1 TTTTGTTTCTCAATTGTTTAACTTCTCGTGCCAAAATCTTAACCTGCTCCTCACCATAAGTCATA
* * * * **
23706101 TCTGGTTGAATCTTAACTTCTGTCGGTGAAATCACATGTGAAGGATCTGATCTATAT
66 TCCGGTCGAATCTCAACTGCTGTCAATGAAATCACATGTGAAGGATCTGATCTATAT
23706158 TGGCGTAACA
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
125 113 1.00
ACGTcount: A:0.26, C:0.21, G:0.15, T:0.37
Consensus pattern (125 bp):
TTTTGTTTCTCAATTGTTTAACTTCTCGTGCCAAAATCTTAACCTGCTCCTCACCATAAGTCATA
TCCGGTCGAATCTCAACTGCTGTCAATGAAATCACATGTGAAGGATCTGATCTATATCGG
Found at i:23718956 original size:40 final size:40
Alignment explanation
Indices: 23718886--23719056 Score: 193
Period size: 40 Copynumber: 4.1 Consensus size: 40
23718876 AAACCAAGTA
* *
23718886 CCTTCGGGATTTAG-CCGGATATAGCT-ACTCGCTCAAATG
1 CCTTCGGGACTTAGCCCGGATATAG-TAACTCGCACAAATG
* * *
23718925 CCTTCAGGACTTAGCTCGGTTATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
* *
23718965 CCTTCGGGACCTAGCCCAGATATAGTAACTCGCACAAATGCCTAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCAC--A-----AATG
23719012 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
23719052 CCTTC
1 CCTTC
23719057 AAATTTTATC
Statistics
Matches: 111, Mismatches: 12, Indels: 17
0.79 0.09 0.12
Matches are distributed among these distances:
39 13 0.12
40 59 0.53
42 1 0.01
45 1 0.01
47 37 0.33
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATG
Found at i:23719034 original size:47 final size:47
Alignment explanation
Indices: 23718961--23719054 Score: 170
Period size: 47 Copynumber: 2.0 Consensus size: 47
23718951 AACTCGCACA
23718961 AATGCCTTCGGGACCTAGCCCAGATATAGTAACTCGCACAAATGCCT
1 AATGCCTTCGGGACCTAGCCCAGATATAGTAACTCGCACAAATGCCT
* *
23719008 AATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCACAAATGCCT
1 AATGCCTTCGGGACCTAGCCCAGATATAGTAACTCGCACAAATGCCT
23719055 TCAAATTTTA
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
47 45 1.00
ACGTcount: A:0.29, C:0.29, G:0.20, T:0.22
Consensus pattern (47 bp):
AATGCCTTCGGGACCTAGCCCAGATATAGTAACTCGCACAAATGCCT
Found at i:23723631 original size:27 final size:27
Alignment explanation
Indices: 23723574--23723631 Score: 62
Period size: 27 Copynumber: 2.1 Consensus size: 27
23723564 ACCCCTAATC
* * *
23723574 GATAAAATGATTATTATGCCCCTGCGT
1 GATAAAATGACTATTATGCCCCTACGA
* * *
23723601 GATAAAATGACTGTTATGCGCCTATGA
1 GATAAAATGACTATTATGCCCCTACGA
23723628 GATA
1 GATA
23723632 TATAATTATA
Statistics
Matches: 25, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.21, T:0.31
Consensus pattern (27 bp):
GATAAAATGACTATTATGCCCCTACGA
Found at i:23724332 original size:18 final size:19
Alignment explanation
Indices: 23724309--23724344 Score: 56
Period size: 18 Copynumber: 1.9 Consensus size: 19
23724299 TAGGAACTCG
23724309 TGTTTTAAAAAG-AAACAA
1 TGTTTTAAAAAGTAAACAA
*
23724327 TGTTTTACAAAGTAAACA
1 TGTTTTAAAAAGTAAACA
23724345 CAAGAACGCA
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 11 0.69
19 5 0.31
ACGTcount: A:0.50, C:0.08, G:0.11, T:0.31
Consensus pattern (19 bp):
TGTTTTAAAAAGTAAACAA
Found at i:23726414 original size:43 final size:43
Alignment explanation
Indices: 23726311--23726415 Score: 120
Period size: 43 Copynumber: 2.4 Consensus size: 43
23726301 GTTTACTGAG
* *
23726311 ATGTGATTACGTGTAAGACCATGTCTGGGACATTAGCATCGTT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGAT
* * * * * *
23726354 ATATGATTTCGTATAAGACCCTGTCTTGGACAGTGGCATCGAT
1 ATGTGATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGAT
* *
23726397 ATGTGATAACATGTAAGAC
1 ATGTGATTACGTGTAAGAC
23726416 TATATTTGGG
Statistics
Matches: 49, Mismatches: 13, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
43 49 1.00
ACGTcount: A:0.29, C:0.16, G:0.24, T:0.31
Consensus pattern (43 bp):
ATGTGATTACGTGTAAGACCATGTCTGGGACAGTAGCATCGAT
Found at i:23731161 original size:40 final size:40
Alignment explanation
Indices: 23731102--23731195 Score: 118
Period size: 40 Copynumber: 2.4 Consensus size: 40
23731092 TGATTAAGTT
* * *
23731102 TGGCAGTAAGTGTGTGAGTTGGAATAACTTTGGCTACAAA
1 TGGCACTAAGTGTGCGAGTTGGAATAACTTCGGCTACAAA
* * *
23731142 TGGCACTAATTGTGCGAGTTGGAATAGCTTCGGCTACATGA
1 TGGCACTAAGTGTGCGAGTTGGAATAACTTCGGCTACA-AA
23731183 -GGCACTAAGTGTG
1 TGGCACTAAGTGTG
23731196 TGATACTGAG
Statistics
Matches: 46, Mismatches: 7, Indels: 2
0.84 0.13 0.04
Matches are distributed among these distances:
40 45 0.98
41 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.31, T:0.29
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGAGTTGGAATAACTTCGGCTACAAA
Found at i:23738508 original size:40 final size:40
Alignment explanation
Indices: 23738453--23738546 Score: 136
Period size: 40 Copynumber: 2.4 Consensus size: 40
23738443 TGATAAAGTT
*
23738453 TGGCAGTAAGTGTGCGAGTTGGAATAACTTCGGCTACAAA
1 TGGCACTAAGTGTGCGAGTTGGAATAACTTCGGCTACAAA
* * *
23738493 TGGCACTAATTGTGCGAGTTGGAATAGCTTCGGCTACATGA
1 TGGCACTAAGTGTGCGAGTTGGAATAACTTCGGCTACA-AA
23738534 -GGCACTAAGTGTG
1 TGGCACTAAGTGTG
23738547 TGATACTGAG
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
40 47 0.98
41 1 0.02
ACGTcount: A:0.27, C:0.16, G:0.31, T:0.27
Consensus pattern (40 bp):
TGGCACTAAGTGTGCGAGTTGGAATAACTTCGGCTACAAA
Found at i:23743716 original size:96 final size:96
Alignment explanation
Indices: 23743561--23743754 Score: 379
Period size: 96 Copynumber: 2.0 Consensus size: 96
23743551 GTGATGCTTG
23743561 AATAGTCGAATAATGACTAGTTTAAAATCTTTAAATTTTAAGCTCAAGAGCATAAAGGGGTAAAT
1 AATAGTCGAATAATGACTAGTTTAAAATCTTTAAATTTTAAGCTCAAGAGCATAAAGGGGTAAAT
23743626 TCGGATAAGAGAAAAGAGAAAGTAATCGAAT
66 TCGGATAAGAGAAAAGAGAAAGTAATCGAAT
*
23743657 AATAGTCGAATAATGACTAGTTTAAAATCTTTAAATTTTAAGCTCAAGAGCATAGAGGGGTAAAT
1 AATAGTCGAATAATGACTAGTTTAAAATCTTTAAATTTTAAGCTCAAGAGCATAAAGGGGTAAAT
23743722 TCGGATAAGAGAAAAGAGAAAGTAATCGAAT
66 TCGGATAAGAGAAAAGAGAAAGTAATCGAAT
23743753 AA
1 AA
23743755 CCGTTGTAAT
Statistics
Matches: 97, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
96 97 1.00
ACGTcount: A:0.46, C:0.08, G:0.20, T:0.26
Consensus pattern (96 bp):
AATAGTCGAATAATGACTAGTTTAAAATCTTTAAATTTTAAGCTCAAGAGCATAAAGGGGTAAAT
TCGGATAAGAGAAAAGAGAAAGTAATCGAAT
Found at i:23744656 original size:38 final size:38
Alignment explanation
Indices: 23744595--23744707 Score: 154
Period size: 38 Copynumber: 2.9 Consensus size: 38
23744585 ATTTGATGTG
*
23744595 TATCCGGGCTTAAAGACCCGCAGGCTTCGTGCTGGTAAAA
1 TATCCGGG-TTAAA-TCCCGCAGGCTTCGTGCTGGTAAAA
**
23744635 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTATTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
* * *
23744673 TATCCGGGATAAATCCCGCAGGCCTAGTGCTGGTA
1 TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTA
23744708 TTATATTCGG
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
38 54 0.81
39 5 0.07
40 8 0.12
ACGTcount: A:0.22, C:0.25, G:0.27, T:0.26
Consensus pattern (38 bp):
TATCCGGGTTAAATCCCGCAGGCTTCGTGCTGGTAAAA
Found at i:23744708 original size:38 final size:38
Alignment explanation
Indices: 23744611--23744718 Score: 162
Period size: 38 Copynumber: 2.8 Consensus size: 38
23744601 GGCTTAAAGA
** *
23744611 CCCGCAGGCTTCGTGCTGGTAAAATATCCGGGTTAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
23744649 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
* * *
23744687 CCCGCAGGCCTAGTGCTGGTATTATATTCGGG
1 CCCGCAGGCTTCGTGCTGGTATTATATCCGGG
23744719 CCTTTGTGCC
Statistics
Matches: 64, Mismatches: 6, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
38 64 1.00
ACGTcount: A:0.20, C:0.24, G:0.28, T:0.28
Consensus pattern (38 bp):
CCCGCAGGCTTCGTGCTGGTATTATATCCGGGATAAAT
Found at i:23744874 original size:43 final size:43
Alignment explanation
Indices: 23744690--23744878 Score: 274
Period size: 43 Copynumber: 4.4 Consensus size: 43
23744680 GATAAATCCC
* * * *
23744690 GCAGGCCTAGTGCTGGT-AT-TATATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
23744731 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
23744774 GCAGGCTTAGTACCGGTGATGTGTATTCGGGCCTTTGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
*
23744817 GCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
1 GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
* *
23744860 GCAGGCGTAATGCCGGTGA
1 GCAGGCTTAGTGCCGGTGA
23744879 AATGATATGT
Statistics
Matches: 132, Mismatches: 14, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
41 14 0.11
42 2 0.02
43 116 0.88
ACGTcount: A:0.13, C:0.23, G:0.34, T:0.30
Consensus pattern (43 bp):
GCAGGCTTAGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTA
Found at i:23744876 original size:86 final size:86
Alignment explanation
Indices: 23744711--23744878 Score: 309
Period size: 86 Copynumber: 2.0 Consensus size: 86
23744701 GCTGGTATTA
23744711 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
* *
23744776 AGGCTTAGTACCGGTGATGTG
66 AGGCGTAATACCGGTGATGTG
23744797 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
1 TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
*
23744862 AGGCGTAATGCCGGTGA
66 AGGCGTAATACCGGTGA
23744879 AATGATATGT
Statistics
Matches: 79, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
86 79 1.00
ACGTcount: A:0.12, C:0.24, G:0.34, T:0.30
Consensus pattern (86 bp):
TATTCGGGCCTTTGTGCCTAGCAGGCTTCGTGCCGGTGATGTGTATTCGGGCCTTCGTGCCTAGC
AGGCGTAATACCGGTGATGTG
Found at i:23749986 original size:40 final size:40
Alignment explanation
Indices: 23749901--23749997 Score: 124
Period size: 40 Copynumber: 2.4 Consensus size: 40
23749891 TGATTAAGTT
* *
23749901 TGGCAGTAAGTGTGCGAGTTGGAATAACTTCGGCTACAAA
1 TGGCACTAAGTGTGTGAGTTGGAATAACTTCGGCTACAAA
* * *
23749941 TGGCACTAATTGTGTGAGTTGGAATAGCTTCGGCTACATGA
1 TGGCACTAAGTGTGTGAGTTGGAATAACTTCGGCTACA-AA
*
23749982 -GGCACGAAGTGTGTGA
1 TGGCACTAAGTGTGTGA
23749998 TACTGAGATA
Statistics
Matches: 49, Mismatches: 7, Indels: 2
0.84 0.12 0.03
Matches are distributed among these distances:
40 48 0.98
41 1 0.02
ACGTcount: A:0.27, C:0.14, G:0.32, T:0.27
Consensus pattern (40 bp):
TGGCACTAAGTGTGTGAGTTGGAATAACTTCGGCTACAAA
Found at i:23755649 original size:21 final size:21
Alignment explanation
Indices: 23755625--23755664 Score: 53
Period size: 21 Copynumber: 1.9 Consensus size: 21
23755615 AAGTGAAAGT
* *
23755625 AGTTGGAGATAGTTTGAAAAC
1 AGTTGCAGATAGTTAGAAAAC
*
23755646 AGTTGCAGATCGTTAGAAA
1 AGTTGCAGATAGTTAGAAA
23755665 TCGTATGTAG
Statistics
Matches: 16, Mismatches: 3, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 16 1.00
ACGTcount: A:0.38, C:0.07, G:0.28, T:0.28
Consensus pattern (21 bp):
AGTTGCAGATAGTTAGAAAAC
Done.