Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 72 of 297
Found at i:25741856 original size:27 final size:27
Alignment explanation
Indices: 25741826--25742052 Score: 337
Period size: 27 Copynumber: 8.4 Consensus size: 27
25741816 GGGGCAAAAT
* * * *
25741826 GGTAATTTTACCCCACAAGGGTATCTC
1 GGTAATTCTACCCTACAGGGGTATTTC
25741853 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
* *
25741880 GGTATTTCTACCCTACAAGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
25741907 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
** * *
25741934 AATAATTCTATCCTACAGGGGTATTTT
1 GGTAATTCTACCCTACAGGGGTATTTC
25741961 GGTAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
25741988 GATAATTCTACCCTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
25742015 GGTAATTCTACCTTACAGGGGTATTTC
1 GGTAATTCTACCCTACAGGGGTATTTC
*
25742042 AGTAATTCTAC
1 GGTAATTCTAC
25742053 AACTTATCCA
Statistics
Matches: 180, Mismatches: 20, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 180 1.00
ACGTcount: A:0.25, C:0.21, G:0.19, T:0.35
Consensus pattern (27 bp):
GGTAATTCTACCCTACAGGGGTATTTC
Found at i:25751716 original size:24 final size:24
Alignment explanation
Indices: 25751670--25751717 Score: 62
Period size: 24 Copynumber: 2.0 Consensus size: 24
25751660 ATAAAAGGTT
*
25751670 AATAATAATAATAGTTAAGTAAGA
1 AATAATAATAATAATTAAGTAAGA
*
25751694 AATAATAATAGTACATTAA-TAAGA
1 AATAATAATAATA-ATTAAGTAAGA
25751718 CAAACAATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 17 0.81
25 4 0.19
ACGTcount: A:0.58, C:0.02, G:0.10, T:0.29
Consensus pattern (24 bp):
AATAATAATAATAATTAAGTAAGA
Found at i:25751791 original size:30 final size:30
Alignment explanation
Indices: 25751727--25751797 Score: 79
Period size: 30 Copynumber: 2.4 Consensus size: 30
25751717 ACAAACAATT
** *
25751727 TAATAATAACGATAGTACTAAATAAAATAA
1 TAATAATAATAATAGTAATAAATAAAATAA
* * **
25751757 TAATACTAATAATAGTAATAAATATAATGG
1 TAATAATAATAATAGTAATAAATAAAATAA
25751787 TAATAATAATA
1 TAATAATAATA
25751798 GTTAATGCTA
Statistics
Matches: 33, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
30 33 1.00
ACGTcount: A:0.58, C:0.04, G:0.07, T:0.31
Consensus pattern (30 bp):
TAATAATAATAATAGTAATAAATAAAATAA
Found at i:25751913 original size:3 final size:3
Alignment explanation
Indices: 25751907--25752072 Score: 113
Period size: 3 Copynumber: 54.7 Consensus size: 3
25751897 GTGGTAGTAG
* *
25751907 TAA TAA TACA TTAA TAA GAA TAA TAG TAA TAA TAA -AA TAA TAA TAA
1 TAA TAA TA-A -TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
25751953 TAA TAAA TAG TAG TAG TAAA TAA AAA TAA TAA TAG TAA TAA TAA TAA
1 TAA T-AA TAA TAA TAA T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
25752000 TGAA -AA TAG CAA AAA TAA TAA TAG TAA T-A TAA TAG TAA TAA TAA
1 T-AA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
* * * * *
25752044 CAA TAA TAA TTA TTA TTA TAA TAG TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
25752073 CAAATAAGTA
Statistics
Matches: 130, Mismatches: 25, Indels: 16
0.76 0.15 0.09
Matches are distributed among these distances:
2 6 0.05
3 113 0.87
4 9 0.07
5 2 0.02
ACGTcount: A:0.60, C:0.02, G:0.07, T:0.31
Consensus pattern (3 bp):
TAA
Found at i:25751933 original size:26 final size:26
Alignment explanation
Indices: 25751904--25752052 Score: 103
Period size: 26 Copynumber: 5.8 Consensus size: 26
25751894 AAAGTGGTAG
* *
25751904 TAGTAATAATACATTAATAAGAATAA
1 TAGTAATAATAAAATAATAAGAATAA
*
25751930 TAGTAATAATAAAATAATAATAATAA
1 TAGTAATAATAAAATAATAAGAATAA
* * * * *
25751956 TAAATAGTAGTAGTAAATAAAAATAATAA
1 T-AGTAATAATA--AAATAATAAGAATAA
25751985 TAGTAATAAT--AATAAT--GAA-AA
1 TAGTAATAATAAAATAATAAGAATAA
* * * *
25752006 TAGCAAAAATAATAATAGTAA-TATAA
1 TAGTAATAATAA-AATAATAAGAATAA
25752032 TAGTAATAATAACAATAATAA
1 TAGTAATAATAA-AATAATAA
25752053 TTATTATTAT
Statistics
Matches: 94, Mismatches: 20, Indels: 18
0.71 0.15 0.14
Matches are distributed among these distances:
21 10 0.11
22 2 0.02
24 10 0.11
25 1 0.01
26 43 0.46
27 7 0.07
28 6 0.06
29 15 0.16
ACGTcount: A:0.62, C:0.02, G:0.07, T:0.29
Consensus pattern (26 bp):
TAGTAATAATAAAATAATAAGAATAA
Found at i:25751973 original size:29 final size:30
Alignment explanation
Indices: 25751900--25751992 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 30
25751890 GTAGAAAGTG
*
25751900 GTAGTAGT-AATAATACATTAATAAGAATAATA
1 GTAGTAGTAAATAATA-A-TAATAA-TATAATA
* *
25751932 GTAATAATAAAATAATAATAATAATA-AATA
1 GTAGTAGT-AAATAATAATAATAATATAATA
*
25751962 GTAGTAGTAAATAAAAATAATAATAGTAATA
1 GTAGTAGTAAATAATAATAATAATA-TAATA
25751993 ATAATAATGA
Statistics
Matches: 51, Mismatches: 6, Indels: 9
0.77 0.09 0.14
Matches are distributed among these distances:
29 16 0.31
30 10 0.20
31 5 0.10
32 12 0.24
33 1 0.02
34 7 0.14
ACGTcount: A:0.59, C:0.01, G:0.10, T:0.30
Consensus pattern (30 bp):
GTAGTAGTAAATAATAATAATAATATAATA
Found at i:25752141 original size:3 final size:3
Alignment explanation
Indices: 25752133--25752167 Score: 52
Period size: 3 Copynumber: 11.7 Consensus size: 3
25752123 TATGATAAAC
* *
25752133 ATA ATA ATA ATG ATA ATA GTA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
25752168 GGTAAAATAG
Statistics
Matches: 28, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.60, C:0.00, G:0.06, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:25753609 original size:49 final size:49
Alignment explanation
Indices: 25753537--25753632 Score: 192
Period size: 49 Copynumber: 2.0 Consensus size: 49
25753527 AGAACAACGA
25753537 TGAAACTGTGAAGTAAAACAACAAATCACAGTTAATTGGTTTCTTATGG
1 TGAAACTGTGAAGTAAAACAACAAATCACAGTTAATTGGTTTCTTATGG
25753586 TGAAACTGTGAAGTAAAACAACAAATCACAGTTAATTGGTTTCTTAT
1 TGAAACTGTGAAGTAAAACAACAAATCACAGTTAATTGGTTTCTTAT
25753633 TTACACCATA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
49 47 1.00
ACGTcount: A:0.40, C:0.12, G:0.17, T:0.31
Consensus pattern (49 bp):
TGAAACTGTGAAGTAAAACAACAAATCACAGTTAATTGGTTTCTTATGG
Found at i:25757351 original size:15 final size:13
Alignment explanation
Indices: 25757324--25757368 Score: 54
Period size: 15 Copynumber: 3.2 Consensus size: 13
25757314 TAACTAATAT
25757324 TAATATTTAATTA
1 TAATATTTAATTA
25757337 TAATAGTTATAATTAA
1 TAATA-TT-TAATT-A
25757353 TTAATATTTAATTA
1 -TAATATTTAATTA
25757367 TA
1 TA
25757369 TTAAATAGAA
Statistics
Matches: 28, Mismatches: 0, Indels: 8
0.78 0.00 0.22
Matches are distributed among these distances:
13 7 0.25
14 3 0.11
15 10 0.36
16 3 0.11
17 5 0.18
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.51
Consensus pattern (13 bp):
TAATATTTAATTA
Found at i:25757381 original size:30 final size:30
Alignment explanation
Indices: 25757322--25757381 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
25757312 AATAACTAAT
** *
25757322 ATTAATATTTAATTATAATAGTTATAATTA
1 ATTAATATTTAATTATAATAAATAGAATTA
*
25757352 ATTAATATTTAATTATATTAAATAGAATTA
1 ATTAATATTTAATTATAATAAATAGAATTA
25757382 TAGATATTAA
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.48, C:0.00, G:0.03, T:0.48
Consensus pattern (30 bp):
ATTAATATTTAATTATAATAAATAGAATTA
Found at i:25760671 original size:42 final size:42
Alignment explanation
Indices: 25760624--25760703 Score: 133
Period size: 42 Copynumber: 1.9 Consensus size: 42
25760614 AACCATACAC
25760624 TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAGGGAT
1 TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAGGGAT
* * *
25760666 TGGTTTTGCTTCTCCTTGTGGCTTTGGCTTGTAATCAG
1 TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAG
25760704 TGCTTGGATT
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
42 35 1.00
ACGTcount: A:0.11, C:0.19, G:0.25, T:0.45
Consensus pattern (42 bp):
TGGTTTTACTTCACCTTCTGGCTTTGGCTTGTAATCAGGGAT
Found at i:25760716 original size:42 final size:42
Alignment explanation
Indices: 25760632--25760716 Score: 125
Period size: 42 Copynumber: 2.0 Consensus size: 42
25760622 ACTGGTTTTA
*
25760632 CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGTTTTG
1 CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGATTTG
* * * *
25760674 CTTCTCCTTGTGGCTTTGGCTTGTAATCAGTGCTTGGATTTG
1 CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGATTTG
25760716 C
1 C
25760717 ATCATATTGG
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.11, C:0.20, G:0.26, T:0.44
Consensus pattern (42 bp):
CTTCACCTTCTGGCTTTGGCTTGTAATCAGGGATTGGATTTG
Found at i:25761046 original size:40 final size:41
Alignment explanation
Indices: 25760995--25761135 Score: 135
Period size: 41 Copynumber: 3.5 Consensus size: 41
25760985 TGTAAAACAT
* *
25760995 AGAGCAATAGCGGCG-TTTTACCAAAAATGTCGCTAAAAAC
1 AGAGCAATAGCGGCGCTTTTACCAAAAACGCCGCTAAAAAC
* * ****
25761035 AGAGTAATAGCGGCGTTTTTTGTTAAAACGCCGCTAAAAAC
1 AGAGCAATAGCGGCGCTTTTACCAAAAACGCCGCTAAAAAC
***
25761076 AGAGCAATAGCGGCGCTTTT-GGTAAAACGCCGCTAAAAATC
1 AGAGCAATAGCGGCGCTTTTACCAAAAACGCCGCTAAAAA-C
*
25761117 -GAAGCATTAGCGGCGCTTT
1 AG-AGCAATAGCGGCGCTTT
25761136 CGGTAAAACG
Statistics
Matches: 87, Mismatches: 11, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
40 33 0.38
41 54 0.62
ACGTcount: A:0.34, C:0.20, G:0.23, T:0.23
Consensus pattern (41 bp):
AGAGCAATAGCGGCGCTTTTACCAAAAACGCCGCTAAAAAC
Found at i:25761070 original size:41 final size:40
Alignment explanation
Indices: 25761025--25761154 Score: 172
Period size: 41 Copynumber: 3.2 Consensus size: 40
25761015 CCAAAAATGT
* * *
25761025 CGCTAAAAACAGAGTAATAGCGGCGTTTTTTGTTAAAACGC
1 CGCTAAAAACAGAGCAATAGCGGCG-CTTTTGGTAAAACGC
25761066 CGCTAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGC
1 CGCTAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGC
* *
25761106 CGCTAAAAATC-GAAGCATTAGCGGCGCTTTCGGTAAAACGC
1 CGCTAAAAA-CAG-AGCAATAGCGGCGCTTTTGGTAAAACGC
*
25761147 CACTAAAA
1 CGCTAAAA
25761155 GTCATATAAC
Statistics
Matches: 81, Mismatches: 6, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
40 23 0.28
41 58 0.72
ACGTcount: A:0.35, C:0.22, G:0.22, T:0.21
Consensus pattern (40 bp):
CGCTAAAAACAGAGCAATAGCGGCGCTTTTGGTAAAACGC
Found at i:25761776 original size:22 final size:22
Alignment explanation
Indices: 25761728--25761776 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
25761718 TTGGTTAAGG
* *
25761728 GTTTAATGTTTATGAGTTACTA
1 GTTTAAGGTTTATGAATTACTA
*
25761750 TTTTAAGGTTTATGAATTA-TGA
1 GTTTAAGGTTTATGAATTACT-A
25761772 GTTTA
1 GTTTA
25761777 GTGATTATGG
Statistics
Matches: 22, Mismatches: 4, Indels: 2
0.79 0.14 0.07
Matches are distributed among these distances:
21 1 0.05
22 21 0.95
ACGTcount: A:0.29, C:0.02, G:0.18, T:0.51
Consensus pattern (22 bp):
GTTTAAGGTTTATGAATTACTA
Found at i:25762042 original size:7 final size:7
Alignment explanation
Indices: 25762027--25762089 Score: 56
Period size: 7 Copynumber: 9.0 Consensus size: 7
25762017 TAGGTTAATA
25762027 TTTAGGG
1 TTTAGGG
*
25762034 TTTATGG
1 TTTAGGG
*
25762041 TTTAGGA
1 TTTAGGG
* *
25762048 TTTATGA
1 TTTAGGG
25762055 TTTAGGG
1 TTTAGGG
*
25762062 TTTTGGG
1 TTTAGGG
25762069 TTTAAGGG
1 TTT-AGGG
*
25762077 -TTGGGG
1 TTTAGGG
25762083 TTTAGGG
1 TTTAGGG
25762090 GTTAATATAG
Statistics
Matches: 44, Mismatches: 10, Indels: 4
0.76 0.17 0.07
Matches are distributed among these distances:
6 3 0.07
7 38 0.86
8 3 0.07
ACGTcount: A:0.16, C:0.00, G:0.38, T:0.46
Consensus pattern (7 bp):
TTTAGGG
Found at i:25765966 original size:43 final size:43
Alignment explanation
Indices: 25765864--25765978 Score: 133
Period size: 43 Copynumber: 2.7 Consensus size: 43
25765854 ATAATTTTTT
* *
25765864 TAAAGTTCATGATTTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
* * ** * *
25765907 TAAAAGTTATTTTCTTTAGTGGCGTTTTTTG-GAAAAGCGCCGC
1 TAAAGGTCATGATCTTTAGCGGCG-TTTGTGAGAAAAGCGCCGC
*
25765950 TAAAGGTCATGATCTTTAGCGCCGTTTGT
1 TAAAGGTCATGATCTTTAGCGGCGTTTGT
25765979 TAAAAAACAC
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
42 4 0.07
43 47 0.84
44 5 0.09
ACGTcount: A:0.23, C:0.16, G:0.25, T:0.36
Consensus pattern (43 bp):
TAAAGGTCATGATCTTTAGCGGCGTTTGTGAGAAAAGCGCCGC
Found at i:25766494 original size:6 final size:6
Alignment explanation
Indices: 25766483--25766508 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
25766473 TACTTGAGAT
25766483 TTTAAA TTTAAA TTTAAA TTTAAA TT
1 TTTAAA TTTAAA TTTAAA TTTAAA TT
25766509 ATGTTTTCAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTTAAA
Found at i:25768067 original size:20 final size:20
Alignment explanation
Indices: 25768042--25768095 Score: 72
Period size: 21 Copynumber: 2.6 Consensus size: 20
25768032 AAAATATCGA
25768042 TTTACCAATATTTATAAGAC
1 TTTACCAATATTTATAAGAC
* *
25768062 TTTACCAAAAATTTATAAGAT
1 TTTACC-AATATTTATAAGAC
*
25768083 TTTATCAATATTT
1 TTTACCAATATTT
25768096 TCAAATTTTC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
20 12 0.41
21 17 0.59
ACGTcount: A:0.41, C:0.11, G:0.04, T:0.44
Consensus pattern (20 bp):
TTTACCAATATTTATAAGAC
Found at i:25768933 original size:20 final size:20
Alignment explanation
Indices: 25768900--25768938 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
25768890 CTTTATCAAA
*
25768900 ATATCTAATAATTTACCAAT
1 ATATCTAACAATTTACCAAT
*
25768920 ATATCTAACGATTTACCAA
1 ATATCTAACAATTTACCAA
25768939 ATTTTTTATT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.44, C:0.18, G:0.03, T:0.36
Consensus pattern (20 bp):
ATATCTAACAATTTACCAAT
Found at i:25769082 original size:20 final size:20
Alignment explanation
Indices: 25769057--25769171 Score: 142
Period size: 20 Copynumber: 5.8 Consensus size: 20
25769047 ATATTAACAA
25769057 TTACCAAAATTTCTAAGGAT
1 TTACCAAAATTTCTAAGGAT
* *
25769077 TTACCAATATTTCTAA-GAA
1 TTACCAAAATTTCTAAGGAT
* * *
25769096 TTCCCTAAAATATCTAACGAT
1 TTACC-AAAATTTCTAAGGAT
*
25769117 TTACCGAAATTTCTAAGGAT
1 TTACCAAAATTTCTAAGGAT
* *
25769137 TTACCAAAATATCTAATGAT
1 TTACCAAAATTTCTAAGGAT
25769157 TTACCAAAATTTCTA
1 TTACCAAAATTTCTA
25769172 TCGTTTTTGT
Statistics
Matches: 79, Mismatches: 14, Indels: 4
0.81 0.14 0.04
Matches are distributed among these distances:
19 6 0.08
20 67 0.85
21 6 0.08
ACGTcount: A:0.40, C:0.17, G:0.07, T:0.36
Consensus pattern (20 bp):
TTACCAAAATTTCTAAGGAT
Found at i:25769166 original size:60 final size:59
Alignment explanation
Indices: 25769045--25769171 Score: 159
Period size: 60 Copynumber: 2.2 Consensus size: 59
25769035 ACCCTATACT
* * *
25769045 AAATAT-TAACAATTACCAAAATTTCTAAGGATTTACCAATATTTCTAAGAATTCCCTA
1 AAATATCTAACAATTACCAAAATTTCTAAGGATTTACCAAAATATCTAAGAATTACCTA
* * *
25769103 AAATATCTAACGATTTACCGAAATTTCTAAGGATTTACCAAAATATCTAATGATTTACC-A
1 AAATATCTAAC-AATTACCAAAATTTCTAAGGATTTACCAAAATATCTAA-GAATTACCTA
*
25769163 AAATTTCTA
1 AAATATCTA
25769172 TCGTTTTTGT
Statistics
Matches: 59, Mismatches: 7, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
58 6 0.10
59 4 0.07
60 43 0.73
61 6 0.10
ACGTcount: A:0.43, C:0.17, G:0.06, T:0.35
Consensus pattern (59 bp):
AAATATCTAACAATTACCAAAATTTCTAAGGATTTACCAAAATATCTAAGAATTACCTA
Found at i:25770600 original size:93 final size:93
Alignment explanation
Indices: 25770488--25770658 Score: 306
Period size: 93 Copynumber: 1.8 Consensus size: 93
25770478 GCCCATAAGT
* *
25770488 GAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
25770553 CGAGCTCGGATGCCTAGTTACATCTCAC
66 CGAGCTCGGATGCCTAGTTACATCTCAC
*
25770581 GAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
*
25770646 CGAGTTCGGATGC
66 CGAGCTCGGATGC
25770659 TCAACCATCC
Statistics
Matches: 74, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
93 74 1.00
ACGTcount: A:0.28, C:0.30, G:0.22, T:0.20
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTCGGACATTCGCATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAC
Found at i:25770655 original size:46 final size:46
Alignment explanation
Indices: 25770480--25770655 Score: 216
Period size: 46 Copynumber: 3.8 Consensus size: 46
25770470 TGTAACCCGC
* *
25770480 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
25770526 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA---C-A-TTCGCAT
* * *
25770576 -C-TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCAT
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
*
25770619 CCATAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGA
25770656 TGCTCAACCA
Statistics
Matches: 112, Mismatches: 9, Indels: 18
0.81 0.06 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 2 0.02
45 2 0.02
46 65 0.58
47 28 0.25
48 2 0.02
49 2 0.02
50 3 0.03
51 2 0.02
ACGTcount: A:0.29, C:0.30, G:0.21, T:0.20
Consensus pattern (46 bp):
CCATAAGTGAACTCGGACTCAACTCAACGAGCTCGGACATTCGCAT
Found at i:25774550 original size:17 final size:16
Alignment explanation
Indices: 25774528--25774578 Score: 57
Period size: 17 Copynumber: 3.0 Consensus size: 16
25774518 TCTAAAGGTG
*
25774528 ATTTTATCTTCTTTATT
1 ATTTTATCTTATTT-TT
25774545 ATTTTACTCTTATTTTT
1 ATTTTA-TCTTATTTTT
*
25774562 ACTTTTATTTTATTTTT
1 A-TTTTATCTTATTTTT
25774579 TCCCTTTTTC
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
17 18 0.60
18 12 0.40
ACGTcount: A:0.18, C:0.10, G:0.00, T:0.73
Consensus pattern (16 bp):
ATTTTATCTTATTTTT
Found at i:25774644 original size:14 final size:13
Alignment explanation
Indices: 25774616--25774667 Score: 52
Period size: 13 Copynumber: 3.8 Consensus size: 13
25774606 TATATACATC
25774616 ATAATAAAAATAT
1 ATAATAAAAATAT
25774629 ATAATAAAATATAT
1 ATAATAAAA-ATAT
* *
25774643 ATATACAAAACAAAT
1 ATA-ATAAAA-ATAT
25774658 ATAA-AAAAAT
1 ATAATAAAAAT
25774668 TACCTTTTCC
Statistics
Matches: 33, Mismatches: 4, Indels: 5
0.79 0.10 0.12
Matches are distributed among these distances:
12 1 0.03
13 13 0.39
14 8 0.24
15 11 0.33
ACGTcount: A:0.69, C:0.04, G:0.00, T:0.27
Consensus pattern (13 bp):
ATAATAAAAATAT
Found at i:25775345 original size:22 final size:22
Alignment explanation
Indices: 25775303--25775347 Score: 56
Period size: 22 Copynumber: 2.0 Consensus size: 22
25775293 TTCTAATACG
*
25775303 TATATATATACTATATGTATTT
1 TATATATATACTATATATATTT
*
25775325 TATATATATTA-TGTATATATTT
1 TATATATA-TACTATATATATTT
25775347 T
1 T
25775348 TTTTAATGCC
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
22 18 0.90
23 2 0.10
ACGTcount: A:0.36, C:0.02, G:0.04, T:0.58
Consensus pattern (22 bp):
TATATATATACTATATATATTT
Found at i:25777655 original size:21 final size:20
Alignment explanation
Indices: 25777611--25777673 Score: 65
Period size: 20 Copynumber: 3.1 Consensus size: 20
25777601 TTCTAAAATA
*
25777611 TCTAACAATTTACCAA-ATTT
1 TCTAACATTTTACCAATA-TT
*
25777631 TCTATCATTTTACCAATACTT
1 TCTAACATTTTACCAATA-TT
* *
25777652 TCTAAGATTTTACTAATATT
1 TCTAACATTTTACCAATATT
25777672 TC
1 TC
25777674 CAAATTTTCT
Statistics
Matches: 36, Mismatches: 6, Indels: 2
0.82 0.14 0.05
Matches are distributed among these distances:
20 18 0.50
21 18 0.50
ACGTcount: A:0.33, C:0.19, G:0.02, T:0.46
Consensus pattern (20 bp):
TCTAACATTTTACCAATATT
Found at i:25777750 original size:20 final size:20
Alignment explanation
Indices: 25777708--25777822 Score: 83
Period size: 20 Copynumber: 5.8 Consensus size: 20
25777698 GTCTTAACAA
* *
25777708 TTACCAAAATTTCTATAAC-T
1 TTACCAATATTTCTA-AGCAT
25777728 TTACCAATATTTCTAAGCAT
1 TTACCAATATTTCTAAGCAT
** * *
25777748 TTATTAATGTATCTAATG-AT
1 TTACCAATATTTCTAA-GCAT
* *
25777768 TTACCAATATTTCTAAGAAC
1 TTACCAATATTTCTAAGCAT
*
25777788 TTACCAATATATCTAA-CTAT
1 TTACCAATATTTCTAAGC-AT
* *
25777808 TTATCAAAATTTCTA
1 TTACCAATATTTCTA
25777823 TCTTTTTATC
Statistics
Matches: 74, Mismatches: 17, Indels: 8
0.75 0.17 0.08
Matches are distributed among these distances:
19 3 0.04
20 70 0.95
21 1 0.01
ACGTcount: A:0.38, C:0.17, G:0.03, T:0.42
Consensus pattern (20 bp):
TTACCAATATTTCTAAGCAT
Found at i:25777801 original size:40 final size:40
Alignment explanation
Indices: 25777727--25777822 Score: 113
Period size: 40 Copynumber: 2.4 Consensus size: 40
25777717 TTTCTATAAC
* * ** *
25777727 TTTACCAATATTTCTAAGCATTTATTAATGTATCTAA-TGA
1 TTTACCAATATTTCTAAGAACTTACCAATATATCTAACT-A
25777767 TTTACCAATATTTCTAAGAACTTACCAATATATCTAACTA
1 TTTACCAATATTTCTAAGAACTTACCAATATATCTAACTA
* *
25777807 TTTATCAAAATTTCTA
1 TTTACCAATATTTCTA
25777823 TCTTTTTATC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
40 47 0.98
41 1 0.02
ACGTcount: A:0.38, C:0.16, G:0.04, T:0.43
Consensus pattern (40 bp):
TTTACCAATATTTCTAAGAACTTACCAATATATCTAACTA
Found at i:25777920 original size:20 final size:20
Alignment explanation
Indices: 25777895--25778189 Score: 141
Period size: 20 Copynumber: 14.8 Consensus size: 20
25777885 GTCTTAACAA
25777895 TTACCAAAATATCTAAGGAT
1 TTACCAAAATATCTAAGGAT
* *
25777915 TTACCAAAATATATAAGGAA
1 TTACCAAAATATCTAAGGAT
* * **
25777935 TTACCAATATGTCTAACAAT
1 TTACCAAAATATCTAAGGAT
* * *
25777955 TTACCAATATTTCCAAGGAT
1 TTACCAAAATATCTAAGGAT
**
25777975 TTACCAAAATATCTAACAAT
1 TTACCAAAATATCTAAGGAT
* * * **
25777995 ATATCAAAATTTCTATCGAT
1 TTACCAAAATATCTAAGGAT
* * *
25778015 TTACC--AATATTTATGAAACT
1 TTACCAAAATATCTAAG-GA-T
* * *
25778035 TTACCAATATTTCTAAGAAT
1 TTACCAAAATATCTAAGGAT
* **
25778055 TTACTAAAATAT-TTGGCGAT
1 TTACCAAAATATCTAAG-GAT
*
25778075 TTACCAATATATCTAACGG-T
1 TTACCAAAATATCTAA-GGAT
* * *
25778095 TTACCAAAATTTTTAAGGTT
1 TTACCAAAATATCTAAGGAT
** * *
25778115 TTA-CTGAACATCTAATGAT
1 TTACCAAAATATCTAAGGAT
* * * *
25778134 TTACCAAAATTTTTAATGTT
1 TTACCAAAATATCTAAGGAT
* * *
25778154 TTACTAAAATATGTAACGAT
1 TTACCAAAATATCTAAGGAT
* *
25778174 TTGCCAAAATTTCTAA
1 TTACCAAAATATCTAA
25778190 AATTTTACAA
Statistics
Matches: 199, Mismatches: 67, Indels: 18
0.70 0.24 0.06
Matches are distributed among these distances:
18 7 0.04
19 17 0.09
20 164 0.82
21 4 0.02
22 7 0.04
ACGTcount: A:0.40, C:0.15, G:0.08, T:0.37
Consensus pattern (20 bp):
TTACCAAAATATCTAAGGAT
Found at i:25777974 original size:60 final size:60
Alignment explanation
Indices: 25777889--25778026 Score: 163
Period size: 60 Copynumber: 2.3 Consensus size: 60
25777879 TGTGAAGTCT
* * * * *
25777889 TAACAA-TTACCAAAATATCTAAGGATTTACCAAAATATATAAGGAAT-TACCAATATGTC
1 TAACAATTTACCAATATTTCCAAGGATTTACCAAAATATATAA-CAATATACCAAAATGTC
* * *
25777948 TAACAATTTACCAATATTTCCAAGGATTTACCAAAATATCTAACAATATATCAAAATTTC
1 TAACAATTTACCAATATTTCCAAGGATTTACCAAAATATATAACAATATACCAAAATGTC
* *
25778008 TATCGATTTACCAATATTT
1 TAACAATTTACCAATATTT
25778027 ATGAAACTTT
Statistics
Matches: 67, Mismatches: 10, Indels: 3
0.84 0.12 0.04
Matches are distributed among these distances:
59 9 0.13
60 58 0.87
ACGTcount: A:0.44, C:0.17, G:0.06, T:0.33
Consensus pattern (60 bp):
TAACAATTTACCAATATTTCCAAGGATTTACCAAAATATATAACAATATACCAAAATGTC
Found at i:25777981 original size:187 final size:187
Alignment explanation
Indices: 25777605--25778062 Score: 508
Period size: 187 Copynumber: 2.4 Consensus size: 187
25777595 TACATTTTCT
* * * * * *
25777605 AAAATATCTAACAATTTACCAAATTTTCTATCATTTTACCAATACTTTCTAAGATTTTACTAATA
1 AAAATATCTAACAATTTATCAAAATTTCTATCATTTTACCAATA-TTTATGAGACTTTACCAATA
** ** * *
25777670 TTTCCAAATTTTCTAAATTCTACATCAAGTCTTAACAATTACCAAAATTTCTATAACTTTACCAA
65 TTTTAAAATTTTCTAAACACCACATCAAGTCTTAACAATTACCAAAATATCTATAACTTTACCAA
* * * * ** * ** *
25777735 TATTTCTAAGCATTTATTAATGTATCTAATGATTTACCAATATTTCTAAGAACTTACC
130 AATATATAAGCAATTACCAATATATCTAACAATTTACCAATATTTCCAAGAACTTACC
* * * * *
25777793 AATATATCTAACTATTTATCAAAATTTCTATCTTTTTATCAATATTTATGAGACTTCACCAATAT
1 AAAATATCTAACAATTTATCAAAATTTCTATCATTTTACCAATATTTATGAGACTTTACCAATAT
** *
25777858 TTTAAAATTTTCTAAACACCATGTGAAGTCTTAACAATTACCAAAATATCTA-AGGA-TTTACCA
66 TTTAAAATTTTCTAAACACCACATCAAGTCTTAACAATTACCAAAATATCTATA--ACTTTACCA
* * * *
25777921 AAATATATAAGGAATTACCAATATGTCTAACAATTTACCAATATTTCCAAGGATTTACC
129 AAATATATAAGCAATTACCAATATATCTAACAATTTACCAATATTTCCAAGAACTTACC
* *
25777980 AAAATATCTAACAATATATCAAAATTTCTATCGA-TTTACCAATATTTATGAAACTTTACCAATA
1 AAAATATCTAACAATTTATCAAAATTTCTATC-ATTTTACCAATATTTATGAGACTTTACCAATA
*
25778044 TTTCTAAGAATTTACTAAA
65 TTT-TAA-AATTTTCTAAA
25778063 ATATTTGGCG
Statistics
Matches: 223, Mismatches: 42, Indels: 9
0.81 0.15 0.03
Matches are distributed among these distances:
186 1 0.00
187 170 0.76
188 42 0.19
189 10 0.04
ACGTcount: A:0.40, C:0.17, G:0.05, T:0.39
Consensus pattern (187 bp):
AAAATATCTAACAATTTATCAAAATTTCTATCATTTTACCAATATTTATGAGACTTTACCAATAT
TTTAAAATTTTCTAAACACCACATCAAGTCTTAACAATTACCAAAATATCTATAACTTTACCAAA
ATATATAAGCAATTACCAATATATCTAACAATTTACCAATATTTCCAAGAACTTACC
Found at i:25778118 original size:40 final size:39
Alignment explanation
Indices: 25778074--25778202 Score: 134
Period size: 40 Copynumber: 3.3 Consensus size: 39
25778064 TATTTGGCGA
* *
25778074 TTTACCAATATATCTAACGGTTTACCAAAATTTTTAAGGT
1 TTTACTAA-ATATCTAACGATTTACCAAAATTTTTAAGGT
* * * *
25778114 TTTACTGAACATCTAATGATTTACCAAAATTTTTAATGT
1 TTTACTAAATATCTAACGATTTACCAAAATTTTTAAGGT
* * * **
25778153 TTTACTAAAATATGTAACGATTTGCCAAAATTTCTAAAAT
1 TTTACT-AAATATCTAACGATTTACCAAAATTTTTAAGGT
25778193 TTTAC-AAATA
1 TTTACTAAATA
25778203 CTTCCAAATT
Statistics
Matches: 74, Mismatches: 14, Indels: 4
0.80 0.15 0.04
Matches are distributed among these distances:
38 5 0.07
39 33 0.45
40 36 0.49
ACGTcount: A:0.39, C:0.13, G:0.08, T:0.40
Consensus pattern (39 bp):
TTTACTAAATATCTAACGATTTACCAAAATTTTTAAGGT
Found at i:25778138 original size:39 final size:40
Alignment explanation
Indices: 25778085--25778185 Score: 132
Period size: 39 Copynumber: 2.5 Consensus size: 40
25778075 TTACCAATAT
* *
25778085 ATCTAACGGTTTACCAAAATTTTTAAGGTTTTACT-GAAC
1 ATCTAACGATTTACCAAAATTTTTAAGGTTTTACTAAAAC
* * *
25778124 ATCTAATGATTTACCAAAATTTTTAATGTTTTACTAAAAT
1 ATCTAACGATTTACCAAAATTTTTAAGGTTTTACTAAAAC
* *
25778164 ATGTAACGATTTGCCAAAATTT
1 ATCTAACGATTTACCAAAATTT
25778186 CTAAAATTTT
Statistics
Matches: 53, Mismatches: 8, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
39 32 0.60
40 21 0.40
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.41
Consensus pattern (40 bp):
ATCTAACGATTTACCAAAATTTTTAAGGTTTTACTAAAAC
Found at i:25778308 original size:20 final size:20
Alignment explanation
Indices: 25778260--25778392 Score: 92
Period size: 20 Copynumber: 6.7 Consensus size: 20
25778250 TTTCTATAAC
* * *
25778260 TTTACCAAAATATCCAATGA
1 TTTACCAATATTTCTAATGA
* * *
25778280 CTTATCAATATGTCTAATGA
1 TTTACCAATATTTCTAATGA
*
25778300 TTTCCCAATATTTCTAAAT-A
1 TTTACCAATATTTCT-AATGA
*
25778320 TTTACCAATATTTCTAAGGA
1 TTTACCAATATTTCTAATGA
* * *
25778340 TTTATCATTATATT-TGATGA
1 TTTACCAATAT-TTCTAATGA
* *
25778360 TTTACCAAAATTT-TAAAGA
1 TTTACCAATATTTCTAATGA
*
25778379 TTTTACTAATATTT
1 -TTTACCAATATTT
25778393 TTAAAATTTC
Statistics
Matches: 87, Mismatches: 22, Indels: 8
0.74 0.19 0.07
Matches are distributed among these distances:
19 8 0.09
20 74 0.85
21 5 0.06
ACGTcount: A:0.37, C:0.14, G:0.06, T:0.44
Consensus pattern (20 bp):
TTTACCAATATTTCTAATGA
Found at i:25786227 original size:51 final size:51
Alignment explanation
Indices: 25786172--25786299 Score: 159
Period size: 51 Copynumber: 2.5 Consensus size: 51
25786162 GCCGCCATGT
* * *
25786172 CATCTTTCATCTATGGCCTTAGGCTACATA-CTTCATACCAGACTGCCATAG
1 CATCTTTCATTTATGGTCTTACGCTACATACCTT-ATACCAGACTGCCATAG
* * * *
25786223 CATCTTTCATTTTTGGTCTTACGCCATATACCTTATACTAGACTGCCATAG
1 CATCTTTCATTTATGGTCTTACGCTACATACCTTATACCAGACTGCCATAG
* *
25786274 CCTCTTTTATTTATGGTCTTACGCTA
1 CATCTTTCATTTATGGTCTTACGCTA
25786300 TACACCATTA
Statistics
Matches: 65, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
51 62 0.95
52 3 0.05
ACGTcount: A:0.23, C:0.27, G:0.12, T:0.38
Consensus pattern (51 bp):
CATCTTTCATTTATGGTCTTACGCTACATACCTTATACCAGACTGCCATAG
Found at i:25789820 original size:46 final size:46
Alignment explanation
Indices: 25789670--25789931 Score: 199
Period size: 46 Copynumber: 5.5 Consensus size: 46
25789660 TTTGTGCGCC
* *
25789670 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGA-TAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGT-GCT
* *** * * *
25789716 AGTGTAAGACCATGTCTGGGACATGGCATCGGCGTTGA-GACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGC-CACATTATGAGTGCT
* *
25789764 AGTGTAAGACATGTCTGGGACATTCATCAGCCACATTATTAGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGTGCT
* *
25789810 AGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATGAGTGCT
* * * * * ** *
25789858 AGTGTAAGACCATGTTTGAGACATGGCATCGGACTCGAAGATGA-TAGCC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGAGT-GCT
25789907 AGTGTAAGACCATGTCTGGGACATG
1 AGTGTAAGA-CATGTCTGGGACATG
25789932 GCGTCGGCAA
Statistics
Matches: 172, Mismatches: 32, Indels: 22
0.76 0.14 0.10
Matches are distributed among these distances:
45 4 0.02
46 50 0.29
47 30 0.17
48 39 0.23
49 40 0.23
50 7 0.04
51 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (46 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGTGCT
Found at i:25789853 original size:94 final size:94
Alignment explanation
Indices: 25789670--25789933 Score: 311
Period size: 94 Copynumber: 2.8 Consensus size: 94
25789660 TTTGTGCGCC
*
25789670 AGTGTAAGACATGTCTGGGACATGCATCGGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
* *
25789735 GACATGGCATCGGCGTTGAGACGAGGGCT
66 GACATGGCATCGACGTTGAGACGAGAGCT
* * *
25789764 AGTGTAAGACATGTCTGGGACATTCATCAGCCACATTATTAGT-GCTAGTGTAAGA-CATGTCTG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGA-TAGCCAGTGTAAGACCATGTCTG
*
25789827 GGACAT-GCATCAGCACGTAT-ATACGAGAGCT
65 GGACATGGCATC-G-ACGT-TGAGACGAGAGCT
* * * * * **
25789858 AGTGTAAGACCATGTTTGAGACATGGCATCGGACTCGAAGATGATAGCCAGTGTAAGACCATGTC
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCAC-ATTATGATAGCCAGTGTAAGACCATGTC
25789923 TGGGACATGGC
63 TGGGACATGGC
25789934 GTCGGCAACT
Statistics
Matches: 143, Mismatches: 17, Indels: 15
0.82 0.10 0.09
Matches are distributed among these distances:
92 5 0.03
93 15 0.10
94 70 0.49
95 14 0.10
96 8 0.06
97 15 0.10
98 14 0.10
99 2 0.01
ACGTcount: A:0.28, C:0.19, G:0.29, T:0.24
Consensus pattern (94 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGATAGCCAGTGTAAGACCATGTCTGG
GACATGGCATCGACGTTGAGACGAGAGCT
Found at i:25795832 original size:48 final size:48
Alignment explanation
Indices: 25795695--25795964 Score: 297
Period size: 46 Copynumber: 5.7 Consensus size: 48
25795685 TTTGTGCGCC
** *
25795695 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATTAGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATACGAGAGCT
*
25795741 AGTGTAAGACATGTCTAGGACATGCATCAGCACGTATATACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATACGAGAGCT
** * *
25795789 AGTGTAAGACCATGTCTGGGACATGGCATC-G-GTGT-TGAGACGAGGGCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCACGTAT-ATACGAGAGCT
** *
25795837 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATTAGTGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAG-CACGTATATACGAGAGCT
*
25795883 AGTGTAAGACATGTCTAGGACATGCATCAGCACGTATATACGAGAGCT
1 AGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATACGAGAGCT
*
25795931 AGTGTAAGACCATGTCTGGGACATGGCGTCAGCA
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCA
25795965 ACTTATCCCA
Statistics
Matches: 188, Mismatches: 21, Indels: 26
0.80 0.09 0.11
Matches are distributed among these distances:
45 6 0.03
46 69 0.37
47 20 0.11
48 53 0.28
49 27 0.14
50 13 0.07
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (48 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCACGTATATACGAGAGCT
Found at i:25795843 original size:96 final size:93
Alignment explanation
Indices: 25795695--25795964 Score: 273
Period size: 94 Copynumber: 2.9 Consensus size: 93
25795685 TTTGTGCGCC
* * ** *
25795695 AGTGTAAGACATGTCTGGGACATGCATCAGCCAC--AT-TATTAGTGCTAGTGTAAGACATGTCT
1 AGTGTAAGACATGTCTAGGACATGCATCAG-CACGTATAGACGAGAGCTAGTGTAAGACATGTCT
*
25795757 AGGACATGCATCAGCACGTATATACGAGAGCT
65 GGGACATGCATCAGCAC--AT-TACGAGAGCT
* ** *
25795789 AGTGTAAGACCATGTCTGGGACATGGCATC-G-GTGT-TGAGACGAGGGCTAGTGTAAGACATGT
1 AGTGTAAGA-CATGTCTAGGACAT-GCATCAGCACGTAT-AGACGAGAGCTAGTGTAAGACATGT
** *
25795851 CTGGGACATGCATCAGCCACATTATTAGTGCT
63 CTGGGACATGCATCAG-CACATTACGAGAGCT
*
25795883 AGTGTAAGACATGTCTAGGACATGCATCAGCACGTATATACGAGAGCTAGTGTAAGACCATGTCT
1 AGTGTAAGACATGTCTAGGACATGCATCAGCACGTATAGACGAGAGCTAGTGTAAGA-CATGTCT
*
25795948 GGGACATGGCGTCAGCA
65 GGGACAT-GCATCAGCA
25795965 ACTTATCCCA
Statistics
Matches: 148, Mismatches: 16, Indels: 23
0.79 0.09 0.12
Matches are distributed among these distances:
92 5 0.03
93 14 0.09
94 46 0.31
95 34 0.23
96 46 0.31
97 3 0.02
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.24
Consensus pattern (93 bp):
AGTGTAAGACATGTCTAGGACATGCATCAGCACGTATAGACGAGAGCTAGTGTAAGACATGTCTG
GGACATGCATCAGCACATTACGAGAGCT
Found at i:25795951 original size:142 final size:142
Alignment explanation
Indices: 25795695--25795957 Score: 526
Period size: 142 Copynumber: 1.9 Consensus size: 142
25795685 TTTGTGCGCC
25795695 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATTAGTGCTAGTGTAAGACATGTCTAGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATTAGTGCTAGTGTAAGACATGTCTAGG
25795760 ACATGCATCAGCACGTATATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTT
66 ACATGCATCAGCACGTATATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTT
25795825 GAGACGAGGGCT
131 GAGACGAGGGCT
25795837 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATTAGTGCTAGTGTAAGACATGTCTAGG
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATTAGTGCTAGTGTAAGACATGTCTAGG
25795902 ACATGCATCAGCACGTATATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
66 ACATGCATCAGCACGTATATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGC
25795958 GTCAGCAACT
Statistics
Matches: 121, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
142 121 1.00
ACGTcount: A:0.29, C:0.19, G:0.28, T:0.25
Consensus pattern (142 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATTAGTGCTAGTGTAAGACATGTCTAGG
ACATGCATCAGCACGTATATACGAGAGCTAGTGTAAGACCATGTCTGGGACATGGCATCGGTGTT
GAGACGAGGGCT
Found at i:25805907 original size:219 final size:220
Alignment explanation
Indices: 25805370--25805924 Score: 898
Period size: 220 Copynumber: 2.5 Consensus size: 220
25805360 AGCAGATTTG
* * * *
25805370 AGCAGATCCAAGATGATTTAACATTTCTGTATTGTCAGAGAACAAATCGAAGAAACATATTTGGC
1 AGCAGATCTAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
*
25805435 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGGATGTTTTCACAT
66 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTTCACAT
* * *
25805500 CGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGCAGATCGAAGACATATCATA
131 CGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGAAAATCGAAGACATATCAGA
*
25805565 TTTGGGTTTCACGTGTTTACGCTGA
196 TTTGGCTTTCACGTGTTTACGCTGA
* *
25805590 AGCAGATCTAAGATGAATTGACATCTCTGTACTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
1 AGCAGATCTAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* * * *
25805655 ATCTCCATATTCGACGGAAAGTAGATTGAAGACATAGTAGATCTAACCTTCGAATGTTTTCACAT
66 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTTCACAT
*
25805720 CGAAGTAGATCCAAGATGATTTGGCATCCTTGGGTTGACAA-GAGAAAATCGAAGACATAGT-AG
131 CGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGAAAATCGAAGACATA-TCAG
25805783 ATTTGGCTTTCACGTGTTTACGCTGA
195 ATTTGGCTTTCACGTGTTTACGCTGA
* * *
25805809 AGCAGATCTAAGATGATTTGGCATCTCTGTATTGTCAAAAAACAAATCGAAGAAACAGATTTGGC
1 AGCAGATCTAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
* *
25805874 ATCTCCATATTCGACGGAGAGCATATCGAAGACATAGCAGATCTGACCTTC
66 ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTC
25805925 ATTGCAGCAG
Statistics
Matches: 307, Mismatches: 27, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
219 147 0.48
220 160 0.52
ACGTcount: A:0.33, C:0.18, G:0.21, T:0.27
Consensus pattern (220 bp):
AGCAGATCTAAGATGATTTGACATCTCTGTATTGTCAGAGAACAAATCGAAGAAACAGATTTGGC
ATCTCCATATTCGACGGAGAGCAGATCGAAGACATAGCAGATCTAACCTTCGAATGTTTTCACAT
CGAAGTAGATCCAAGATGATTTGGCATCCTTGCGTTGACAAGGAGAAAATCGAAGACATATCAGA
TTTGGCTTTCACGTGTTTACGCTGA
Found at i:25805995 original size:78 final size:78
Alignment explanation
Indices: 25805866--25806212 Score: 509
Period size: 78 Copynumber: 4.4 Consensus size: 78
25805856 CGAAGAAACA
** * * * * * *
25805866 GATTTGGCATCTCCATATTCGACGGAGAGCATATCGAAGACATAGCAGATCT-GACCTTCATTGC
1 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGAT-TGGACCTTCATTGA
25805930 AGCAGATCCAAGAT
65 AGCAGATCCAAGAT
* * * * * *
25805944 GATTTGGCATCTCTGTATTAGATGGGGAGTAGATTGAAGACACAGCAGATCT-GACCTTAATTGA
1 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGAT-TGGACCTTCATTGA
* *
25806008 AGCAAATCTAAGAT
65 AGCAGATCCAAGAT
25806022 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGATTGGACCTTCATTGAA
25806087 GCAGATCCAAGAT
66 GCAGATCCAAGAT
25806100 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGATTGGACCTTCATTGAA
1 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGATTGGACCTTCATTGAA
25806165 GCAGATCCAAGAT
66 GCAGATCCAAGAT
*
25806178 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATC
1 GATTTGGCATCTCTGTATTAGACGGGGAGTAAATC
25806213 AGAGATAACA
Statistics
Matches: 246, Mismatches: 22, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
77 1 0.00
78 245 1.00
ACGTcount: A:0.32, C:0.18, G:0.24, T:0.26
Consensus pattern (78 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGTAAATCGAAGACATAACAGATTGGACCTTCATTGAA
GCAGATCCAAGAT
Found at i:25806287 original size:44 final size:45
Alignment explanation
Indices: 25806179--25806353 Score: 237
Period size: 45 Copynumber: 3.9 Consensus size: 45
25806169 ATCCAAGATG
* *
25806179 ATTTGGCATCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAA
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGA-AGATAACAA
* * * ** *
25806224 ATTTGGCATCTCTGTATTAGACGGAGAGCAGATTGAAGA-AGTAG
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAA
*
25806268 ATTTGGTGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAA
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAA
*
25806313 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCAAAGATA
1 ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATA
25806354 GCAGATATCG
Statistics
Matches: 113, Mismatches: 15, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
44 37 0.33
45 75 0.66
46 1 0.01
ACGTcount: A:0.32, C:0.14, G:0.28, T:0.26
Consensus pattern (45 bp):
ATTTGGCGTCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAA
Found at i:25806329 original size:89 final size:89
Alignment explanation
Indices: 25806178--25806345 Score: 275
Period size: 89 Copynumber: 1.9 Consensus size: 89
25806168 GATCCAAGAT
25806178 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACAAATTTGGCATCTCTGTATTA
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACAAATTTGGCATCTCTGTATTA
25806243 GACGGAGAGCAGATTGAAGAAGTA
66 GACGGAGAGCAGATTGAAGAAGTA
** * *
25806267 GATTTGGTGTCTCTGTATTAGACGGGGAGCAGATC-GAAGATAACAAATTTGGCGTCTCTGTATT
1 GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAG-AGATAACAAATTTGGCATCTCTGTATT
*
25806331 AGACGGGGAGCAGAT
65 AGACGGAGAGCAGAT
25806346 CAAAGATAGC
Statistics
Matches: 73, Mismatches: 5, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
88 1 0.01
89 72 0.99
ACGTcount: A:0.30, C:0.14, G:0.29, T:0.27
Consensus pattern (89 bp):
GATTTGGCATCTCTGTATTAGACGGGGAGCAAATCAGAGATAACAAATTTGGCATCTCTGTATTA
GACGGAGAGCAGATTGAAGAAGTA
Found at i:25806389 original size:89 final size:89
Alignment explanation
Indices: 25806187--25806364 Score: 223
Period size: 89 Copynumber: 2.0 Consensus size: 89
25806177 TGATTTGGCA
* * *
25806187 TCTCTGTATTAGACGGGGAGCAAATC-AGAGATAACAAATTTGGCATCTCTGTATTAGACGGAGA
1 TCTCTGTATTAGACGGGAAACAGATCGA-AGATAACAAATTTGGCATCTCTGTATTAGACGGAGA
** * *
25806251 GCAGATTGAAGAAGTAGATTTGGTG
65 GCAGATCAAAGAAGCAGATTCGGTG
* * * *
25806276 TCTCTGTATTAGACGGGGAGCAGATCGAAGATAACAAATTTGGCGTCTCTGTATTAGACGGGGAG
1 TCTCTGTATTAGACGGGAAACAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGAGAG
25806341 CAGATCAAAGATAGCAGATATCGG
66 CAGATCAAAGA-AGCAGAT-TCGG
25806365 CTTCCTGAGT
Statistics
Matches: 79, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
89 69 0.87
90 7 0.09
91 3 0.04
ACGTcount: A:0.32, C:0.14, G:0.29, T:0.25
Consensus pattern (89 bp):
TCTCTGTATTAGACGGGAAACAGATCGAAGATAACAAATTTGGCATCTCTGTATTAGACGGAGAG
CAGATCAAAGAAGCAGATTCGGTG
Found at i:25811115 original size:42 final size:40
Alignment explanation
Indices: 25811068--25811190 Score: 142
Period size: 43 Copynumber: 3.0 Consensus size: 40
25811058 ATTGTAAATC
* *
25811068 CAACAACCCAAGTTTATCATCTCCATTTTTAAATTCTTTTTT
1 CAACAATCCAAGATTATC-TCTCC-TTTTTAAATTCTTTTTT
*
25811110 CAACAATCCAAGATTATCTTCTCCTCTTTTTAAATACTTTTTT
1 CAACAATCCAAGATTATC-TCT-C-CTTTTTAAATTCTTTTTT
* *
25811153 CTACAATCTAAGATTATCT-T-CTTTTTAAATTCTTTTTT
1 CAACAATCCAAGATTATCTCTCCTTTTTAAATTCTTTTTT
25811191 TCTAGGATAA
Statistics
Matches: 72, Mismatches: 7, Indels: 8
0.83 0.08 0.09
Matches are distributed among these distances:
38 17 0.24
41 1 0.01
42 20 0.28
43 33 0.46
44 1 0.01
ACGTcount: A:0.28, C:0.21, G:0.02, T:0.49
Consensus pattern (40 bp):
CAACAATCCAAGATTATCTCTCCTTTTTAAATTCTTTTTT
Found at i:25817313 original size:49 final size:49
Alignment explanation
Indices: 25817255--25817432 Score: 200
Period size: 49 Copynumber: 3.7 Consensus size: 49
25817245 TGTTGTGTGT
** *
25817255 CAGTGTAAGACCTGTCTGGGACATGGCATCGACGCTGATAGATGAGAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAAACTGATAGATGAAAGC
* * *
25817304 CAGTGTAAGACCTGTCTGGGACATTGCATC-AAACTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAAACT-GATAGATGAAAGC
* ** * **
25817353 CAGTGTAAGACCTGTCTGGGACACGGCATCGAATTTAAT-G-TGCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGAAACTGATAGATGAAAGC
*
25817400 CAGTGTAAGACCATGTGTGGGACATGGCATCGA
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGA
25817433 CATCTTATCC
Statistics
Matches: 109, Mismatches: 17, Indels: 7
0.82 0.13 0.05
Matches are distributed among these distances:
47 16 0.15
48 21 0.19
49 69 0.63
50 3 0.03
ACGTcount: A:0.28, C:0.20, G:0.29, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGAAACTGATAGATGAAAGC
Found at i:25831343 original size:27 final size:27
Alignment explanation
Indices: 25831312--25831489 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
25831302 TAAATTGTAC
25831312 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
25831339 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25831365 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
25831393 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
25831421 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
25831448 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
25831475 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
25831490 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:25831426 original size:82 final size:81
Alignment explanation
Indices: 25831313--25831468 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
25831303 AAATTGTACA
* *
25831313 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
25831377 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
25831394 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
25831459 TGCGAGTTGA
65 TGCGAATTGA
25831469 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:25831480 original size:82 final size:81
Alignment explanation
Indices: 25831309--25831489 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
25831299 GATTAAATTG
* *
25831309 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
25831374 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
25831390 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
25831454 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
25831472 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
25831490 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:25837075 original size:46 final size:46
Alignment explanation
Indices: 25837013--25837100 Score: 140
Period size: 46 Copynumber: 1.9 Consensus size: 46
25837003 CATTGGGTGG
* * *
25837013 TATGTGAGCCACTGTAAGACATGTCTGGGACATGCATTGGCCACGT
1 TATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCACGT
*
25837059 TATGAGAGCCAATGTAAGATATGTCTGGGACATGCATCGGCC
1 TATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCC
25837101 TTCGGATATA
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
46 38 1.00
ACGTcount: A:0.26, C:0.20, G:0.28, T:0.25
Consensus pattern (46 bp):
TATGAGAGCCAATGTAAGACATGTCTGGGACATGCATCGGCCACGT
Found at i:25837216 original size:49 final size:49
Alignment explanation
Indices: 25837160--25837338 Score: 168
Period size: 49 Copynumber: 3.7 Consensus size: 49
25837150 TGTTGTGTGT
*
25837160 CAGTGTAAGACCTGGT-TGGGACATGGCATCGACAC-CGATAGATGAGAGC
1 CAGTGTAAGACCT-GTCTGGGACATGGCATCGAC-CTCGATAGATGAAAGC
* * *
25837209 CAGTGTAAGACCTATCTGGGACATGGCATCGACCTCGATATATGAAAGT
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
* * * * * ** ***
25837258 CAGTGTAAAACCTGTCTGGGACACGGTATTGACTTTAAT-G-TTCTAGC
1 CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
*
25837305 CAGTGTAAGACCATGTCTGGAACATGGCATCGAC
1 CAGTGTAAGACC-TGTCTGGGACATGGCATCGAC
25837339 ATCTTATCCC
Statistics
Matches: 105, Mismatches: 22, Indels: 7
0.78 0.16 0.05
Matches are distributed among these distances:
47 14 0.13
48 19 0.18
49 72 0.69
ACGTcount: A:0.28, C:0.21, G:0.27, T:0.24
Consensus pattern (49 bp):
CAGTGTAAGACCTGTCTGGGACATGGCATCGACCTCGATAGATGAAAGC
Found at i:25851886 original size:30 final size:30
Alignment explanation
Indices: 25851828--25851886 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
25851818 ATATTCGGGA
* * **
25851828 CTAGGGGTAAAATGGTCATTTTGTCAAAGC
1 CTAGGGGCAAAATGGTAATTTTACCAAAGC
25851858 CTAGGGGCAAAATGGTAATTTTACCAAAG
1 CTAGGGGCAAAATGGTAATTTTACCAAAG
25851887 TTATAAATTT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.34, C:0.14, G:0.25, T:0.27
Consensus pattern (30 bp):
CTAGGGGCAAAATGGTAATTTTACCAAAGC
Found at i:25852277 original size:47 final size:45
Alignment explanation
Indices: 25852209--25852382 Score: 156
Period size: 46 Copynumber: 3.8 Consensus size: 45
25852199 GAGTTATTGT
* * *
25852209 GAGCTAGTGCAAGACATGTCTGGGACATGCATCGACCATATTA-TGA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG-CCAT-TGAGCGA
* * *
25852255 GAGCCAGTGTAAGACCATGTCTGGGGCATGACATCGGCATTGAGGCGA
1 GAGCTAGTGTAAGA-CATGTCTGGGACATG-CATCGCCATTGA-GCGA
* * *
25852303 GTGCTAGTGTAAGACATGTCTGGGACATGCATCGGGC-TCGAGACGTA
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATC-GCCATTGAG-CG-A
* *
25852350 -AGCCAGTGTAAGACATGTCTGGAACATGCATCG
1 GAGCTAGTGTAAGACATGTCTGGGACATGCATCG
25852383 GCTACGAGAT
Statistics
Matches: 108, Mismatches: 13, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
45 2 0.02
46 52 0.48
47 35 0.32
48 19 0.18
ACGTcount: A:0.27, C:0.20, G:0.31, T:0.22
Consensus pattern (45 bp):
GAGCTAGTGTAAGACATGTCTGGGACATGCATCGCCATTGAGCGA
Found at i:25852358 original size:46 final size:48
Alignment explanation
Indices: 25852254--25852479 Score: 175
Period size: 46 Copynumber: 4.8 Consensus size: 48
25852244 CCATATTATG
* * *
25852254 AGAGCCAGTGTAAGACCATGTCTGGGGCATGACATC-GGCATTGAGGCG-
1 AGAGCCAGTGTAAGACCATGTCTGGGACATG-CATCGGGC-TCGAGACGT
* *
25852302 AGTGCTAGTGTAAGA-CATGTCTGGGACATGCATCGGGCTCGAGACGT
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGGCTCGAGACGT
*
25852349 A-AGCCAGTGTAAGA-CATGTCTGGAACATGCATC-GGCTACGAGA--T
1 AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGGCT-CGAGACGT
* * * * * * * *
25852393 -GTGTCAGTATAAGACCTTGTCTGGGATATGGCATCGGTGC-AGATATGCT
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG-GCTCGAGACG-T
**
25852442 AGAGCTTGTGTAAGACCATGTCTGGGACATGGCATCGG
1 AGAGCCAGTGTAAGACCATGTCTGGGACAT-GCATCGG
25852480 CATCTGTACC
Statistics
Matches: 143, Mismatches: 23, Indels: 22
0.76 0.12 0.12
Matches are distributed among these distances:
44 11 0.08
45 15 0.10
46 52 0.36
47 19 0.13
48 15 0.10
49 1 0.01
50 30 0.21
ACGTcount: A:0.25, C:0.19, G:0.32, T:0.23
Consensus pattern (48 bp):
AGAGCCAGTGTAAGACCATGTCTGGGACATGCATCGGGCTCGAGACGT
Found at i:25854475 original size:21 final size:20
Alignment explanation
Indices: 25854446--25854486 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 20
25854436 ACAAAACTTG
25854446 TATAACTATCATCAAACATT
1 TATAACTATCATCAAACATT
*
25854466 TATAATCTATCATCAATCATT
1 TATAA-CTATCATCAAACATT
25854487 AAAATACATG
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 5 0.26
21 14 0.74
ACGTcount: A:0.41, C:0.20, G:0.00, T:0.39
Consensus pattern (20 bp):
TATAACTATCATCAAACATT
Found at i:25865339 original size:17 final size:17
Alignment explanation
Indices: 25865317--25865350 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
25865307 CCAATAAGTA
25865317 AGGAGGAAAACCTATGT
1 AGGAGGAAAACCTATGT
25865334 AGGAGGAAAACCTATGT
1 AGGAGGAAAACCTATGT
25865351 TCTTTCTAGT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.41, C:0.12, G:0.29, T:0.18
Consensus pattern (17 bp):
AGGAGGAAAACCTATGT
Found at i:25866909 original size:14 final size:14
Alignment explanation
Indices: 25866890--25866920 Score: 62
Period size: 14 Copynumber: 2.2 Consensus size: 14
25866880 TATAAACATG
25866890 AATTGAATGAATTC
1 AATTGAATGAATTC
25866904 AATTGAATGAATTC
1 AATTGAATGAATTC
25866918 AAT
1 AAT
25866921 CAAAGCATTG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.45, C:0.06, G:0.13, T:0.35
Consensus pattern (14 bp):
AATTGAATGAATTC
Found at i:25889962 original size:103 final size:103
Alignment explanation
Indices: 25889783--25889990 Score: 344
Period size: 103 Copynumber: 2.0 Consensus size: 103
25889773 TACCCTAAAA
*
25889783 CCCAGGCTTTGTGAGGGACTGTTTTGGTGGTAAGTCACACGGGCGTGTGTCAAGCTGCATGCTAA
1 CCCAGGCCTTGTGAGGGACTGTTTTGGTGGTAAGTCACACGGGCGTGTGTCAAGCTGCATGCTAA
* * **
25889848 ACAGTGTAACTCTTTAACTTGGGTCACACGGGCATGTG
66 ACAGTGTAACTCTCTAACTTGAGTCACACAAGCATGTG
*
25889886 CCCAGGCCTTGTGAGGGACTGTTTTGGTGGTAAGTCACACGGGCGTGTGTCAAGCTGCGTGCTAA
1 CCCAGGCCTTGTGAGGGACTGTTTTGGTGGTAAGTCACACGGGCGTGTGTCAAGCTGCATGCTAA
* *
25889951 ACAGTGTAACTCTCTGACTTGATTCACACAAGCATGTG
66 ACAGTGTAACTCTCTAACTTGAGTCACACAAGCATGTG
25889989 CC
1 CC
25889991 AGCCCGTCTG
Statistics
Matches: 97, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
103 97 1.00
ACGTcount: A:0.21, C:0.22, G:0.30, T:0.27
Consensus pattern (103 bp):
CCCAGGCCTTGTGAGGGACTGTTTTGGTGGTAAGTCACACGGGCGTGTGTCAAGCTGCATGCTAA
ACAGTGTAACTCTCTAACTTGAGTCACACAAGCATGTG
Found at i:25901041 original size:28 final size:27
Alignment explanation
Indices: 25900980--25901076 Score: 140
Period size: 27 Copynumber: 3.6 Consensus size: 27
25900970 TTATTAAGTC
* *
25900980 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
*
25901007 CGCACACTTAGTGCTACATAGTCAAACT
1 CGCACACTTAGTGCTACATAATC-AACT
* *
25901035 CGCACACTTAGTGCTACATATTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
25901062 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
25901077 GCACAATTTA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
27 38 0.59
28 26 0.41
ACGTcount: A:0.30, C:0.29, G:0.13, T:0.28
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:25914710 original size:13 final size:13
Alignment explanation
Indices: 25914692--25914721 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
25914682 AATGGAACAT
25914692 AAAATAAAAATAA
1 AAAATAAAAATAA
25914705 AAAATAAAAATAA
1 AAAATAAAAATAA
25914718 AAAA
1 AAAA
25914722 AATTTTGAGC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.87, C:0.00, G:0.00, T:0.13
Consensus pattern (13 bp):
AAAATAAAAATAA
Found at i:25921126 original size:31 final size:30
Alignment explanation
Indices: 25921088--25921157 Score: 88
Period size: 31 Copynumber: 2.3 Consensus size: 30
25921078 GTCCAGATGT
25921088 CACACGCCCATGTGG-TGTGTCTGTGTGGGCC
1 CACACGCCCATGTGGATGT-TC-GTGTGGGCC
* *
25921119 CACACGCCCGTGTGGCATGTTCGTGTGGGCT
1 CACACGCCCATGTGG-ATGTTCGTGTGGGCC
25921150 CACACGCC
1 CACACGCC
25921158 TAGTTTGGTT
Statistics
Matches: 35, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
31 30 0.86
32 2 0.06
33 3 0.09
ACGTcount: A:0.11, C:0.33, G:0.33, T:0.23
Consensus pattern (30 bp):
CACACGCCCATGTGGATGTTCGTGTGGGCC
Found at i:25934106 original size:40 final size:40
Alignment explanation
Indices: 25934008--25934310 Score: 396
Period size: 40 Copynumber: 7.6 Consensus size: 40
25933998 TCCTCGTTCA
* * * * *
25934008 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
25934047 AATGCCTTCGGGACATAACCCGGATTTAATAACTCACACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
*
25934087 AATGCCTTCGGGACTTAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
25934127 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
25934167 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
25934207 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * * *
25934247 AAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
25934287 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
25934311 CAGCATTCAA
Statistics
Matches: 240, Mismatches: 20, Indels: 7
0.90 0.07 0.03
Matches are distributed among these distances:
39 39 0.16
40 193 0.80
41 8 0.03
ACGTcount: A:0.27, C:0.28, G:0.20, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:25942096 original size:40 final size:40
Alignment explanation
Indices: 25941998--25942300 Score: 344
Period size: 40 Copynumber: 7.6 Consensus size: 40
25941988 TCCTCGTTCA
* * * * *
25941998 AATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACAC-
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* *
25942037 AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
25942077 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
25942117 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * *
25942157 AATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
* * * * *
25942197 AAGGCCTTCGGGGCTTAACCCGGAATTT-GTATCTCGCACA
1 AATGCCTTCGGGACTTAACCCGG-ATTTAATAACTCGCACG
** * * * *
25942237 AATGCCTTC-GGATCTTAGTCCGGATATATTCACTTAGCAC-
1 AATGCCTTCGGGA-CTTAACCCGGATTTAATAAC-TCGCACG
* *
25942277 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAACCCGGA
25942301 CAGCATTCAA
Statistics
Matches: 235, Mismatches: 23, Indels: 11
0.87 0.09 0.04
Matches are distributed among these distances:
39 39 0.17
40 184 0.78
41 12 0.05
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
AATGCCTTCGGGACTTAACCCGGATTTAATAACTCGCACG
Found at i:25942309 original size:41 final size:41
Alignment explanation
Indices: 25942232--25942309 Score: 97
Period size: 40 Copynumber: 1.9 Consensus size: 41
25942222 TTTGTATCTC
* * *
25942232 GCACAAATGCCTTCGGATCTTAGTCCGGATATATTCACTTA
1 GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
25942273 GCACAAA-GCCTTCGGGA-CTTAGCCCGGACAGCATTCA
1 GCACAAATGCCTTC-GGATCTTAGCCCGGACA-CATTCA
25942310 ATTAATCATG
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
40 17 0.53
41 15 0.47
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (41 bp):
GCACAAATGCCTTCGGATCTTAGCCCGGACACATTCACTTA
Found at i:25944248 original size:35 final size:34
Alignment explanation
Indices: 25944170--25944259 Score: 92
Period size: 35 Copynumber: 2.6 Consensus size: 34
25944160 CGTCCTGCTG
* **
25944170 GACTTGTATATCATTTTCACGGTGTTGCCCTGAAA
1 GACTTGTATATCATTTACACGAAGTTGCCC-GAAA
* *
25944205 GACCTGTATATAATTTACACGAAGTTGTCCC-AAA
1 GACTTGTATATCATTTACACGAAGTTG-CCCGAAA
*
25944239 TGACTTGTATACCATTTACAC
1 -GACTTGTATATCATTTACAC
25944260 AGTGTCGTCT
Statistics
Matches: 45, Mismatches: 8, Indels: 4
0.79 0.14 0.07
Matches are distributed among these distances:
34 3 0.07
35 39 0.87
36 3 0.07
ACGTcount: A:0.29, C:0.21, G:0.16, T:0.34
Consensus pattern (34 bp):
GACTTGTATATCATTTACACGAAGTTGCCCGAAA
Found at i:25946579 original size:11 final size:11
Alignment explanation
Indices: 25946563--25946587 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25946553 GTCCTTTACT
25946563 TGTAATTTTTA
1 TGTAATTTTTA
25946574 TGTAATTTTTA
1 TGTAATTTTTA
25946585 TGT
1 TGT
25946588 TTTTGAGGTC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.24, C:0.00, G:0.12, T:0.64
Consensus pattern (11 bp):
TGTAATTTTTA
Found at i:25947554 original size:30 final size:30
Alignment explanation
Indices: 25947518--25947780 Score: 294
Period size: 30 Copynumber: 8.8 Consensus size: 30
25947508 TAACCCGACA
* * *
25947518 ATAATGTCAGCTTGTATGAGCAATTCGATC
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* *
25947548 ATAATGTCAACTTGTGTGCGCAATCCAATC
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* *
25947578 ATAATGTCTGCTTGTGTGAGCAATCCTATC
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
*
25947608 ATAATGTCAGCTTGTGTGAGCAA-CCTGATC
1 ATAATGTCAGCTTGTGTGAGCAATCC-AATC
* * * *
25947638 ATAATGTCAACTTATGTGAACAATCCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* *
25947668 ATAATGTCAGCTTGTGTGAGCAATCCGATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* * * *
25947698 ACAATGTCAACTTGTGTGAACAATCCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* * * *
25947728 ATAATGTCAGATTGTGTAAGCAATTCAATT
1 ATAATGTCAGCTTGTGTGAGCAATCCAATC
* *
25947758 ATAATGTTAACTTGTGTGAGCAA
1 ATAATGTCAGCTTGTGTGAGCAA
25947781 CCCTAAAATA
Statistics
Matches: 197, Mismatches: 34, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
29 2 0.01
30 193 0.98
31 2 0.01
ACGTcount: A:0.32, C:0.17, G:0.18, T:0.33
Consensus pattern (30 bp):
ATAATGTCAGCTTGTGTGAGCAATCCAATC
Found at i:25951199 original size:33 final size:34
Alignment explanation
Indices: 25951151--25951218 Score: 84
Period size: 33 Copynumber: 2.0 Consensus size: 34
25951141 ACAGTGCATG
*
25951151 CAGTAACAGTCTGGGCCAGAGCCCTATTCAGTAA
1 CAGTAACAGTCTGGGCCAGAGCCCTATACAGTAA
* ***
25951185 CAGT-ACAGTTTGGGCTTTAGCCCTATACAGTAA
1 CAGTAACAGTCTGGGCCAGAGCCCTATACAGTAA
25951218 C
1 C
25951219 GGTGTGGGCC
Statistics
Matches: 29, Mismatches: 5, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
33 25 0.86
34 4 0.14
ACGTcount: A:0.28, C:0.25, G:0.22, T:0.25
Consensus pattern (34 bp):
CAGTAACAGTCTGGGCCAGAGCCCTATACAGTAA
Found at i:25953470 original size:27 final size:27
Alignment explanation
Indices: 25953440--25953617 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
25953430 ATATTGAGCC
* *
25953440 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* *
25953467 CGCACACTTAGTGCCACGTAATCAAAC-
1 CGCACACTTAGTGCTACATAATC-AACT
*
25953494 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
25953522 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
25953549 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* * * *
25953576 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
25953603 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
25953618 GTACAATTTA
Statistics
Matches: 124, Mismatches: 22, Indels: 10
0.79 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 98 0.79
28 25 0.20
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:25953600 original size:54 final size:54
Alignment explanation
Indices: 25953440--25953616 Score: 187
Period size: 54 Copynumber: 3.3 Consensus size: 54
25953430 ATATTGAGCC
* * * *
25953440 CGCACACTCAGTGCTAT-ATAATCAACTCGCACACTTAGTGCCACGTAATCAAAC
1 CGCACACTTAGTGC-ATCATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
* * * *
25953494 CGCACACTTAGTGC-TACATAGTCAGACTCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCAT-CATAATCA-ACTCGCACACTTAGTGCCACATAGTCAAAT
* ** * *
25953549 CGCACACTTAGTGCATCATATTCATTTCGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
*
25953603 CGCACCCTTAGTGC
1 CGCACACTTAGTGC
25953617 TGTACAATTT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
52 1 0.01
54 55 0.54
55 45 0.44
56 1 0.01
ACGTcount: A:0.29, C:0.30, G:0.16, T:0.25
Consensus pattern (54 bp):
CGCACACTTAGTGCATCATAATCAACTCGCACACTTAGTGCCACATAGTCAAAT
Found at i:25956179 original size:40 final size:40
Alignment explanation
Indices: 25956124--25956281 Score: 244
Period size: 40 Copynumber: 4.0 Consensus size: 40
25956114 TGGAAAACAA
* * *
25956124 TATAACCAGGTTAAGTCCCGAAGGCATTCGTGTGGGTTAC
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
*
25956164 TATAACCGGGTTAAGTCCCTAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
25956204 TATAACTGGGTTAAGTCCCAAAGGCATTCGTGCGGGTTAT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
* *
25956244 TATAACCGGGTTAAGTCCCGAAGGCATTTGTGCTGGTT
1 TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTT
25956282 GTTACATCTG
Statistics
Matches: 108, Mismatches: 10, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
40 108 1.00
ACGTcount: A:0.23, C:0.19, G:0.28, T:0.30
Consensus pattern (40 bp):
TATAACCGGGTTAAGTCCCGAAGGCATTCGTGCGGGTTAT
Found at i:25969665 original size:21 final size:21
Alignment explanation
Indices: 25969623--25969666 Score: 52
Period size: 21 Copynumber: 2.1 Consensus size: 21
25969613 TGTTGCGTAA
* * *
25969623 AGTAGGATTTTTCTATTAAGG
1 AGTAGGAGTTTACTACTAAGG
*
25969644 AGTAGGAGTTTACTACTGAGG
1 AGTAGGAGTTTACTACTAAGG
25969665 AG
1 AG
25969667 CAAGATTGTG
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.30, C:0.07, G:0.30, T:0.34
Consensus pattern (21 bp):
AGTAGGAGTTTACTACTAAGG
Found at i:25971093 original size:18 final size:18
Alignment explanation
Indices: 25971070--25971106 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
25971060 AAATAAAGGG
25971070 TGTATCTTGCAAAATGAC
1 TGTATCTTGCAAAATGAC
25971088 TGTATCTTGCAAAATGAC
1 TGTATCTTGCAAAATGAC
25971106 T
1 T
25971107 AAGAGTTTAG
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (18 bp):
TGTATCTTGCAAAATGAC
Found at i:25971873 original size:47 final size:47
Alignment explanation
Indices: 25971758--25972128 Score: 247
Period size: 46 Copynumber: 7.9 Consensus size: 47
25971748 GTCATTTGTG
*
25971758 TGAG-CTAGTGTAAGA-CATGTCCGGGACAT-GCATCGGACACATT-AG-
1 TGAGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGG---CATTGAGA
* *
25971803 -GAAGCC-AGTGTAAGACCACGTCTGGGACATGGCATCGGTATTGAGA
1 TG-AGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
* * *
25971849 CGAGCGCTAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGA
1 TGAGC-CTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
* * *
25971895 TGTAAGCC-AGTGTAAGA-CATGCCTGGGACAT-GCAACGGC-TACGAGA
1 TG--AGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCAT-TGAGA
* * * * * * *
25971941 TG-TCTTAGAGTAAGACCATCTCTGGGACATGGCATCAGCATAGATA
1 TGAGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
* * * * *
25971987 TGTGAGAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCAGCCTTGATTTCGA
1 --TGAG-CCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA----GA
* *
25972041 T-AGTC-AGTGTAAGACCATGTCTGGGACATGGCATCGAC-TTGATGGA
1 TGAGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGA--GA
*
25972087 TGAGCC-AGTGTAAGACCATGTCTAGGACATGGCATCGGCATT
1 TGAGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATT
25972129 ATACCCTATG
Statistics
Matches: 262, Mismatches: 38, Indels: 49
0.75 0.11 0.14
Matches are distributed among these distances:
43 1 0.00
44 12 0.05
45 26 0.10
46 78 0.30
47 58 0.22
48 20 0.08
49 29 0.11
50 34 0.13
51 2 0.01
52 1 0.00
54 1 0.00
ACGTcount: A:0.27, C:0.20, G:0.30, T:0.23
Consensus pattern (47 bp):
TGAGCCTAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGA
Found at i:25972059 original size:49 final size:47
Alignment explanation
Indices: 25971992--25972123 Score: 176
Period size: 47 Copynumber: 2.8 Consensus size: 47
25971982 AGATATGTGA
* * *
25971992 GAGCTAGTGTAAGACCATGTCTAGGACATGGCGTCAGCCTTGATTTCGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATC-GACTTGA--TCGAT
* * *
25972042 -AGTCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGATGGAT
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGATCGAT
25972088 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
1 GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCG
25972124 GCATTATACC
Statistics
Matches: 73, Mismatches: 8, Indels: 5
0.85 0.09 0.06
Matches are distributed among these distances:
46 4 0.05
47 33 0.45
48 6 0.08
49 30 0.41
ACGTcount: A:0.26, C:0.20, G:0.30, T:0.25
Consensus pattern (47 bp):
GAGCCAGTGTAAGACCATGTCTAGGACATGGCATCGACTTGATCGAT
Found at i:25974311 original size:80 final size:79
Alignment explanation
Indices: 25974216--25974364 Score: 262
Period size: 80 Copynumber: 1.9 Consensus size: 79
25974206 AATTTTGATG
* * *
25974216 TTTTATGGTAGAATATGAAGTTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTTCGTAAA
1 TTTTATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAA
25974281 AACGAGNTTTGATTT
66 AACGAG-TTTGATTT
25974296 TTTTATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAA
1 TTTTATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAA
25974361 AACG
66 AACG
25974365 TCTAAAATGA
Statistics
Matches: 66, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
80 66 1.00
ACGTcount: A:0.32, C:0.07, G:0.19, T:0.40
Consensus pattern (79 bp):
TTTTATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAA
AACGAGTTTGATTT
Found at i:25974386 original size:80 final size:80
Alignment explanation
Indices: 25974220--25974388 Score: 205
Period size: 80 Copynumber: 2.1 Consensus size: 80
25974210 TTGATGTTTT
* * *
25974220 ATGGTAGAATATGAAGTTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTTCGTAAAAACG
1 ATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAAAACG
* *** **** *
25974285 AGNTTTGATTTTTTT
66 AGCTAAAATGACATA
25974300 ATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAAAACG
1 ATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAAAACG
*
25974365 -TCTAAAATGACATA
66 AGCTAAAATGACATA
25974379 ATCGGTAAAA
1 AT-GGTAAAA
25974389 ATACCAGATG
Statistics
Matches: 75, Mismatches: 13, Indels: 2
0.83 0.14 0.02
Matches are distributed among these distances:
79 6 0.08
80 69 0.92
ACGTcount: A:0.36, C:0.08, G:0.19, T:0.37
Consensus pattern (80 bp):
ATGGTAAAATATGAAGCTTGAGATTGTGTTAAACAACTTTTGCTAAGTGATTTTACGTAAAAACG
AGCTAAAATGACATA
Found at i:25975019 original size:46 final size:46
Alignment explanation
Indices: 25974968--25975233 Score: 193
Period size: 46 Copynumber: 5.7 Consensus size: 46
25974958 TTGGGCATCT
* **
25974968 GAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * * * * * * *
25975014 GAACTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTA-ACTAGGCATTC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACT--TATGGATGCGA-ACGTCC
* * * *
25975061 GAGCTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * * *
25975107 GAACTCGTTGAGTTGAGTCTGAGTTC-GTGA--GATG-TAACTAGGCATCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAAC---G--TCC
* * *
25975154 GAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
* * *
25975200 GAGCTCGTTGACTTGAGTCCGAGTTCGCTTATGG
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
25975234 GCGGGTTACA
Statistics
Matches: 167, Mismatches: 39, Indels: 28
0.71 0.17 0.12
Matches are distributed among these distances:
42 2 0.01
43 4 0.02
45 4 0.02
46 88 0.53
47 58 0.35
48 4 0.02
50 4 0.02
51 3 0.02
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.31
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCC
Found at i:25975083 original size:47 final size:47
Alignment explanation
Indices: 25975017--25975179 Score: 165
Period size: 47 Copynumber: 3.5 Consensus size: 47
25975007 AACGTTTGAA
*
25975017 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATTCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAG
* * * * * *
25975064 CTCGTTGATTTGAGTCCGAGTTCACT--TATG-GA-T-GCGAATGCCCGAA
1 CTCGTTGAGTTGAGTCCGAGTTC-GTGAAATGTAACTAG-GCAT--CCGAG
* *
25975110 CTCGTTGAGTTGAGTCTGAGTTCGTGAGATGTAACTAGGCATCCGAG
1 CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAG
*
25975157 CTCATTGAGTTGAGTCCGAGTTC
1 CTCGTTGAGTTGAGTCCGAGTTC
25975180 ACTTATGGAT
Statistics
Matches: 91, Mismatches: 16, Indels: 18
0.73 0.13 0.14
Matches are distributed among these distances:
43 1 0.01
44 4 0.04
45 2 0.02
46 27 0.30
47 50 0.55
48 2 0.02
49 4 0.04
50 1 0.01
ACGTcount: A:0.21, C:0.19, G:0.29, T:0.31
Consensus pattern (47 bp):
CTCGTTGAGTTGAGTCCGAGTTCGTGAAATGTAACTAGGCATCCGAG
Found at i:25975120 original size:93 final size:93
Alignment explanation
Indices: 25974961--25975226 Score: 415
Period size: 93 Copynumber: 2.9 Consensus size: 93
25974951 CGGATATTTG
* * *
25974961 GGCATCTGAACTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTTTGAACTCGTTGAG
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
25975026 TTGAGTCCGAGTTCGTGAAATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* * * * * *
25975054 GGCATTCGAGCTCGTTGATTTGAGTCCGAGTTCACTTATGGATGCGAATGCCCGAACTCGTTGAG
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
* *
25975119 TTGAGTCTGAGTTCGTGAGATGTAACTA
66 TTGAGTCCGAGTTCGTGAAATGTAACTA
* *
25975147 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAGCTCGTTGAC
1 GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
25975212 TTGAGTCCGAGTTCG
66 TTGAGTCCGAGTTCG
25975227 CTTATGGGCG
Statistics
Matches: 153, Mismatches: 20, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
93 153 1.00
ACGTcount: A:0.22, C:0.19, G:0.29, T:0.30
Consensus pattern (93 bp):
GGCATCCGAGCTCATTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGTCTGAACTCGTTGAG
TTGAGTCCGAGTTCGTGAAATGTAACTA
Found at i:25982140 original size:30 final size:30
Alignment explanation
Indices: 25982084--25982141 Score: 80
Period size: 30 Copynumber: 1.9 Consensus size: 30
25982074 TTTTCGAATA
* * *
25982084 TAGGGGTAAAATGGTTATTCTGCCAAAGTC
1 TAGGGGCAAAATGGTCATTCTACCAAAGTC
*
25982114 TAGGGGCAAAATGGTCATTTTACCAAAG
1 TAGGGGCAAAATGGTCATTCTACCAAAG
25982142 ATGTGAATTT
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 24 1.00
ACGTcount: A:0.33, C:0.14, G:0.26, T:0.28
Consensus pattern (30 bp):
TAGGGGCAAAATGGTCATTCTACCAAAGTC
Found at i:25982641 original size:46 final size:45
Alignment explanation
Indices: 25982526--25982741 Score: 172
Period size: 46 Copynumber: 4.6 Consensus size: 45
25982516 ACACTAGGAG
* *
25982526 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGGCATTGAGATG-
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCCTCGAGATGT
*
25982572 AGCGCTAGTGTAAGACAT-TCTGGGATATGCATCGGCCTCGAGATGT
1 AGC-C-AGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT
*
25982618 AAGCCAGTGCAAGACATGTCTGGGACATGCATCGG-CTACGAGATGT
1 -AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCT-CGAGATGT
** * * * * *
25982664 -TTCAGAGTAAGACCATGTGTTGGACATAGCATCGGCAC-GGATATGT
1 AGCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGC-CTCGAGATGT
*
25982710 GAGAGCTAGTGTAAGACCATGTCTGGGACATG
1 ---AGCCAGTGTAAGA-CATGTCTGGGACATG
25982742 GTGTCGGCCT
Statistics
Matches: 137, Mismatches: 19, Indels: 25
0.76 0.10 0.14
Matches are distributed among these distances:
44 8 0.06
45 40 0.29
46 50 0.36
47 7 0.05
48 10 0.07
49 1 0.01
50 21 0.15
ACGTcount: A:0.27, C:0.19, G:0.31, T:0.23
Consensus pattern (45 bp):
AGCCAGTGTAAGACATGTCTGGGACATGCATCGGCCTCGAGATGT
Found at i:25983169 original size:56 final size:56
Alignment explanation
Indices: 25983083--25983202 Score: 222
Period size: 56 Copynumber: 2.1 Consensus size: 56
25983073 ACAAGGGATG
*
25983083 ATGGGCAAAACATGTCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
1 ATGGGCAAAACATGCCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
*
25983139 ATGGGCAAAACATGCCATGAAACATGTTGTGTTAATGGAAGAATAAAATAAGAAGC
1 ATGGGCAAAACATGCCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
25983195 ATGGGCAA
1 ATGGGCAA
25983203 TAAACTAATA
Statistics
Matches: 62, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
56 62 1.00
ACGTcount: A:0.45, C:0.10, G:0.23, T:0.22
Consensus pattern (56 bp):
ATGGGCAAAACATGCCATGAAACATGTTGTGTTAATGGAAAAATAAAATAAGAAGC
Found at i:25985079 original size:47 final size:47
Alignment explanation
Indices: 25984581--25985071 Score: 747
Period size: 47 Copynumber: 10.3 Consensus size: 47
25984571 TATTCATTGG
* *
25984581 AATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCC
25984630 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
25984677 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
25984724 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
25984771 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
25984818 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
25984865 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
* * * *
25984912 AATGTGATGAATGTGAA-AGTGTATATATATGTGATAAGGCCTAATGGCT
1 AATGTGATGAATGTGAACA-TG--TGTATGTGTGATAAGGCCGAATGGCC
* * * *
25984961 GATGTGATGAATGTGAA-AGTATATATATGTGATAAGGCCGAATGGCC
1 AATGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCC
* *
25985008 AATGTGTGATGAATGTGAA-AGTGTATATATGTGATAAGGCCGAATGGCC
1 AA--TGTGATGAATGTGAACA-TGTGTATGTGTGATAAGGCCGAATGGCC
*
25985057 AATGTGATGGATGTG
1 AATGTGATGAATGTG
25985072 GAAGTGTATA
Statistics
Matches: 423, Mismatches: 13, Indels: 14
0.94 0.03 0.03
Matches are distributed among these distances:
46 1 0.00
47 315 0.74
49 106 0.25
50 1 0.00
ACGTcount: A:0.31, C:0.09, G:0.31, T:0.29
Consensus pattern (47 bp):
AATGTGATGAATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCC
Found at i:25987290 original size:11 final size:11
Alignment explanation
Indices: 25987274--25987298 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
25987264 TTATGCTTAC
25987274 TCGCTTTTCTT
1 TCGCTTTTCTT
25987285 TCGCTTTTCTT
1 TCGCTTTTCTT
25987296 TCG
1 TCG
25987299 GTGTCACCTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.28, G:0.12, T:0.60
Consensus pattern (11 bp):
TCGCTTTTCTT
Found at i:25991296 original size:45 final size:45
Alignment explanation
Indices: 25991229--25991364 Score: 182
Period size: 45 Copynumber: 3.0 Consensus size: 45
25991219 ATATTTTATC
*
25991229 ATAAACATGATTAAAAACGAGTAAGACCATAATTGAAAGACGCTATA
1 ATAAA-ATGATT-AAAACGAGTAAGACCATAGTTGAAAGACGCTATA
* * *
25991276 ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGGCGCCATG
1 ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGACGCTATA
* * * *
25991321 ACAATATGATTAAAACGAGTAAGACCATAGTTGGAAGATGCTAT
1 ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGACGCTAT
25991365 GGCATCATGA
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
45 68 0.86
46 6 0.08
47 5 0.06
ACGTcount: A:0.46, C:0.12, G:0.19, T:0.22
Consensus pattern (45 bp):
ATAAAATGATTAAAACGAGTAAGACCATAGTTGAAAGACGCTATA
Found at i:25992061 original size:4 final size:4
Alignment explanation
Indices: 25992054--25992088 Score: 70
Period size: 4 Copynumber: 8.8 Consensus size: 4
25992044 GTGAAATGGT
25992054 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
1 TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTTA TTT
25992089 TGCCATGAGT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 31 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:25997994 original size:31 final size:31
Alignment explanation
Indices: 25997928--25997996 Score: 93
Period size: 31 Copynumber: 2.2 Consensus size: 31
25997918 TATAATTTCT
* * * * *
25997928 TAACCATCCACATCCCGCTAAGTCCTATAAT
1 TAACCACCCACATCCCACTAAGTCCCACAAA
25997959 TAACCACCCACATCCCACTAAGTCCCACAAA
1 TAACCACCCACATCCCACTAAGTCCCACAAA
25997990 TAACCAC
1 TAACCAC
25997997 TCACCAGATT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.36, C:0.41, G:0.04, T:0.19
Consensus pattern (31 bp):
TAACCACCCACATCCCACTAAGTCCCACAAA
Found at i:26001033 original size:15 final size:15
Alignment explanation
Indices: 26001013--26001043 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
26001003 ACAGTAACTG
26001013 TATCAATTAAAATAA
1 TATCAATTAAAATAA
26001028 TATCAATTAAAATAA
1 TATCAATTAAAATAA
26001043 T
1 T
26001044 TTTTCTCTAT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.58, C:0.06, G:0.00, T:0.35
Consensus pattern (15 bp):
TATCAATTAAAATAA
Found at i:26005834 original size:23 final size:23
Alignment explanation
Indices: 26005789--26005836 Score: 62
Period size: 23 Copynumber: 2.1 Consensus size: 23
26005779 ATAAATAATT
* *
26005789 TATTAAAATATTAATCATAAAAA
1 TATTAAAATATTAATAAAAAAAA
26005812 TATTAAAATA-TAATAAAACAAAA
1 TATTAAAATATTAATAAAA-AAAA
26005835 TA
1 TA
26005837 GTTTTACACC
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
22 6 0.27
23 16 0.73
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (23 bp):
TATTAAAATATTAATAAAAAAAA
Found at i:26006095 original size:45 final size:45
Alignment explanation
Indices: 26006031--26006120 Score: 180
Period size: 45 Copynumber: 2.0 Consensus size: 45
26006021 CATGACACCC
26006031 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
1 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
26006076 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
1 ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
26006121 GATAAATTAA
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 45 1.00
ACGTcount: A:0.38, C:0.27, G:0.02, T:0.33
Consensus pattern (45 bp):
ATATCAACACCTTTACTCCAATTCTTGCTCTCTTAAAACTAAAAA
Found at i:26007318 original size:16 final size:16
Alignment explanation
Indices: 26007273--26007329 Score: 64
Period size: 16 Copynumber: 3.5 Consensus size: 16
26007263 ATGTTTTTGA
26007273 ATTTTTATGAATTTT-C
1 ATTTTTAT-AATTTTAC
26007289 ATATTTTA-AATTTTAC
1 AT-TTTTATAATTTTAC
*
26007305 ATTTTTATAATTTTAA
1 ATTTTTATAATTTTAC
26007321 ATTATTTAT
1 ATT-TTTAT
26007330 TGATGTGGCA
Statistics
Matches: 36, Mismatches: 1, Indels: 7
0.82 0.02 0.16
Matches are distributed among these distances:
15 11 0.31
16 15 0.42
17 10 0.28
ACGTcount: A:0.33, C:0.04, G:0.02, T:0.61
Consensus pattern (16 bp):
ATTTTTATAATTTTAC
Found at i:26010078 original size:86 final size:86
Alignment explanation
Indices: 26009972--26010228 Score: 311
Period size: 86 Copynumber: 3.0 Consensus size: 86
26009962 AATCTGTAAC
* *
26009972 CTTTAACCAGCTCCAATGCAACCGATGGAGGCAAGGCTTTGTTTTTGATCTGCTTTGCTGTTAAT
1 CTTTAACCAGCTCC-ATGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
*
26010037 GCAAGAAGGCAAGATCTGCT-T
65 GCAGGAAGGCAAGATCTGCTGT
* * * *
26010058 CTTTAACTAGCTCCACTGCAATCGATGGACGCAAGGCTTTGTTTTCAATCTGCTTCGCTGTTAAT
1 CTTTAACCAGCTCCA-TGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAAT
* **
26010123 GTAGGAAGGCAAGATCTTTTGT
65 GCAGGAAGGCAAGATCTGCTGT
* * * ** *
26010145 CTTCAACCAGCTCTATCACAACCGAAAGAGGCAAGG-TTTGTGTCTTCGATCTGCTTCGCTGTCA
1 CTTTAACCAGCTCCAT-GCAACCGATGGAGGCAAGGCTTTGT-T-TTCGATCTGCTTCGCTGTTA
26010209 ATGCAGGAAGGCAAGATCTG
63 ATGCAGGAAGGCAAGATCTG
26010229 TAACTTCATT
Statistics
Matches: 144, Mismatches: 22, Indels: 8
0.83 0.13 0.05
Matches are distributed among these distances:
85 1 0.01
86 79 0.55
87 28 0.19
88 36 0.25
ACGTcount: A:0.25, C:0.22, G:0.23, T:0.30
Consensus pattern (86 bp):
CTTTAACCAGCTCCATGCAACCGATGGAGGCAAGGCTTTGTTTTCGATCTGCTTCGCTGTTAATG
CAGGAAGGCAAGATCTGCTGT
Found at i:26015074 original size:19 final size:20
Alignment explanation
Indices: 26015045--26015093 Score: 57
Period size: 19 Copynumber: 2.5 Consensus size: 20
26015035 CACTTCGTGA
* *
26015045 AAATCTAATGCATATG-ATG
1 AAATGTAATGCAAATGCATG
*
26015064 CAATGTAATGCAAATGCATG
1 AAATGTAATGCAAATGCATG
26015084 AAATG-AATGC
1 AAATGTAATGC
26015094 CTAAAGAGAC
Statistics
Matches: 25, Mismatches: 4, Indels: 2
0.81 0.13 0.06
Matches are distributed among these distances:
19 18 0.72
20 7 0.28
ACGTcount: A:0.43, C:0.12, G:0.18, T:0.27
Consensus pattern (20 bp):
AAATGTAATGCAAATGCATG
Found at i:26023773 original size:39 final size:40
Alignment explanation
Indices: 26023676--26023859 Score: 177
Period size: 40 Copynumber: 4.7 Consensus size: 40
26023666 TTGAATGTTG
*
26023676 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
26023714 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
* * * *
26023755 TCCGGGCTAAG-CCGGAAGGCATTTGTGAGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
26023794 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
26023833 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26023860 AACGAGGAGC
Statistics
Matches: 121, Mismatches: 15, Indels: 17
0.79 0.10 0.11
Matches are distributed among these distances:
39 52 0.43
40 57 0.47
41 11 0.09
42 1 0.01
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.25
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26023881 original size:79 final size:79
Alignment explanation
Indices: 26023677--26023892 Score: 182
Period size: 79 Copynumber: 2.7 Consensus size: 79
26023667 TGAATGTTGT
**
26023677 CCGGGCTAAGTCCCGAAGGC-TTGTGCT-A-AGTGAC-AATATCCGGACTAAGAT-CCGAAGGCA
1 CCGGGCTAAG-CCCGAAGGCATT-TG-TAAGAGTGACTAA-ATCCGGGTTAA-ATCCCGAAGGCA
*
26023737 TTTGTGCGAGATACTAATT
61 TTTGTGCGAGATACTAATA
* * * *
26023756 CCGGGCTAAGCCGGAAGGCATTTGTGAGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGT
1 CCGGGCTAAGCCCGAAGGCATTTGTAAGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
26023821 GCGA-ATTACT-ATAA
66 GCGAGA-TACTAAT-A
* * *
26023835 CCGGGCTATGTCCCGAAGGCATTTG-AACGAG-GAGCTATATCC-GGTTAAATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGTAA-GAGTGA-CTAAATCCGGGTTAAATCCCGAAGG
26023893 TACGTGATTT
Statistics
Matches: 114, Mismatches: 13, Indels: 20
0.78 0.09 0.14
Matches are distributed among these distances:
77 1 0.01
78 15 0.13
79 73 0.64
80 25 0.22
ACGTcount: A:0.27, C:0.21, G:0.28, T:0.24
Consensus pattern (79 bp):
CCGGGCTAAGCCCGAAGGCATTTGTAAGAGTGACTAAATCCGGGTTAAATCCCGAAGGCATTTGT
GCGAGATACTAATA
Found at i:26025607 original size:49 final size:49
Alignment explanation
Indices: 26025535--26025634 Score: 191
Period size: 49 Copynumber: 2.0 Consensus size: 49
26025525 TGAATAAATT
26025535 ATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACAAAACG
1 ATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACAAAACG
*
26025584 ATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACGAAACG
1 ATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACAAAACG
26025633 AT
1 AT
26025635 CATATGGAGA
Statistics
Matches: 50, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 50 1.00
ACGTcount: A:0.42, C:0.14, G:0.17, T:0.27
Consensus pattern (49 bp):
ATGTAAACGAACCTTGATGAATCTATTTTCATAGGAAAGTAACAAAACG
Found at i:26029162 original size:28 final size:29
Alignment explanation
Indices: 26029130--26029228 Score: 114
Period size: 28 Copynumber: 3.5 Consensus size: 29
26029120 ATAATAAGCC
*
26029130 CGCACACTTAGTGCTTA-ATAGTCGAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* *
26029158 CGCACACTTAGTGC-TATATAATCAAACT
1 CGCACACTTAGTGCTTACATAATCGAACT
* * *
26029186 CGCACACTTAGTGCTATACA-ATTTGAACC
1 CGCACACTTAGTGCT-TACATAATCGAACT
26029215 CGCACACTTAGTGC
1 CGCACACTTAGTGC
26029229 CAATCTCATG
Statistics
Matches: 61, Mismatches: 7, Indels: 5
0.84 0.10 0.07
Matches are distributed among these distances:
27 2 0.03
28 37 0.61
29 19 0.31
30 3 0.05
ACGTcount: A:0.30, C:0.27, G:0.15, T:0.27
Consensus pattern (29 bp):
CGCACACTTAGTGCTTACATAATCGAACT
Found at i:26034281 original size:50 final size:49
Alignment explanation
Indices: 26034163--26034288 Score: 146
Period size: 49 Copynumber: 2.6 Consensus size: 49
26034153 TCCATCAAGT
* * *
26034163 CGATGCCATGTCCTAGACATGGTCTTACAGTGACTATCGAAATCGAGGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTAACTATCGAAATCCAGGC
* * * * *
26034212 CAACGCCATGTCCCAGACATGGTCTTACACTAACTCTC-ACAGATCCATGC
1 CGATGCCATGTCCTAGACATGGTCTTACACTAACTATCGA-A-ATCCAGGC
*
26034262 TGATGCCATGTCCTAGACATGGTCTTA
1 CGATGCCATGTCCTAGACATGGTCTTA
26034289 AACTGACACC
Statistics
Matches: 63, Mismatches: 12, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
48 1 0.02
49 33 0.52
50 29 0.46
ACGTcount: A:0.26, C:0.29, G:0.20, T:0.25
Consensus pattern (49 bp):
CGATGCCATGTCCTAGACATGGTCTTACACTAACTATCGAAATCCAGGC
Found at i:26034453 original size:140 final size:145
Alignment explanation
Indices: 26034163--26034476 Score: 339
Period size: 140 Copynumber: 2.2 Consensus size: 145
26034153 TCCATCAAGT
*
26034163 CGATGCCATGTCCTAGACATGGTCTTACAGTGACTATCGAAATCGAGGCCAACGCCATGTCCCAG
1 CGATGCCATGTCCCAGACATGGTCTTACAGTGACTATCGAAATCGAGGCCAACGCCATGTCCCAG
* *
26034228 ACATGGTCTTACACTAACTCTCACAGATCCATGCTGATGCCATGTCCTAGACATGGTCTTAAACT
66 ACATGGTCTTACACTAACTCT--CAGATCAATGCTGATGACATGTCCTAGACATGGTCTTAAACT
26034293 GACACCTCTATAAGTAC
129 GACACCTCTATAAGTAC
* * ** *
26034310 CGATGCCATGCCCCAGACATGGTCTTACATTGAC-A-C-ATCTCGTA-GCCAATG-CATGTCCCA
1 CGATGCCATGTCCCAGACATGGTCTTACAGTGACTATCGAAATCG-AGGCCAACGCCATGTCCCA
* * * *
26034370 GACAT-GTCTTACACTAGCTCT-TGTTTCAATGCTGATGACATGT-CTCAGACATGGTCTTACAC
65 GACATGGTCTTACACTAACTCTCAG-ATCAATGCTGATGACATGTCCT-AGACATGGTCTTAAAC
* *
26034432 T---AGCTCTCATAATGTGGC
128 TGACACCTCT-ATAA-GT-AC
26034450 CGATG-CATGTCCCAGACAT-GTCTTACA
1 CGATGCCATGTCCCAGACATGGTCTTACA
26034477 CTAGCACACA
Statistics
Matches: 146, Mismatches: 15, Indels: 21
0.80 0.08 0.12
Matches are distributed among these distances:
137 5 0.03
138 12 0.08
139 18 0.12
140 38 0.26
142 15 0.10
143 14 0.10
144 10 0.07
145 2 0.01
146 1 0.01
147 31 0.21
ACGTcount: A:0.26, C:0.28, G:0.18, T:0.27
Consensus pattern (145 bp):
CGATGCCATGTCCCAGACATGGTCTTACAGTGACTATCGAAATCGAGGCCAACGCCATGTCCCAG
ACATGGTCTTACACTAACTCTCAGATCAATGCTGATGACATGTCCTAGACATGGTCTTAAACTGA
CACCTCTATAAGTAC
Found at i:26036625 original size:40 final size:41
Alignment explanation
Indices: 26036581--26036682 Score: 125
Period size: 41 Copynumber: 2.5 Consensus size: 41
26036571 GATTTGAATA
** *
26036581 TATATATGGCACTTAGTGTGCGA-TTCGAAATAGATTCAGT
1 TATATATGGCACTTAGTGTGCGAGACCGAAATAGATTCAGC
* * * *
26036621 TATATATGGCACTTAGTGTGTGAGACCGAGATAGCTTCGGC
1 TATATATGGCACTTAGTGTGCGAGACCGAAATAGATTCAGC
*
26036662 TATGTATGGCACTTAGTGTGC
1 TATATATGGCACTTAGTGTGC
26036683 AAGATTATAA
Statistics
Matches: 52, Mismatches: 9, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
40 22 0.42
41 30 0.58
ACGTcount: A:0.25, C:0.15, G:0.26, T:0.33
Consensus pattern (41 bp):
TATATATGGCACTTAGTGTGCGAGACCGAAATAGATTCAGC
Found at i:26036760 original size:43 final size:43
Alignment explanation
Indices: 26036693--26036794 Score: 150
Period size: 43 Copynumber: 2.4 Consensus size: 43
26036683 AAGATTATAA
*
26036693 TACGTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGAT
1 TACGTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAAAT
* * *
26036736 TTCGTGTAAGACTATAGCTGGGCTATTGGCATCGATATGAAAT
1 TACGTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAAAT
* *
26036779 TACATGTAAGATCATA
1 TACGTGTAAGACCATA
26036795 TCTGGGATAT
Statistics
Matches: 51, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
43 51 1.00
ACGTcount: A:0.31, C:0.15, G:0.24, T:0.30
Consensus pattern (43 bp):
TACGTGTAAGACCATAGCTAGGCTATTGGCATCGATATGAAAT
Found at i:26036800 original size:43 final size:42
Alignment explanation
Indices: 26036697--26036809 Score: 138
Period size: 43 Copynumber: 2.6 Consensus size: 42
26036687 TTATAATACG
* * * *
26036697 TGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGATTTCG
1 TGTAAGA-CATAGCTGGGCTATTGGCATCGATATGAAATTACA
26036740 TGTAAGACTATAGCTGGGCTATTGGCATCGATATGAAATTACA
1 TGTAAGAC-ATAGCTGGGCTATTGGCATCGATATGAAATTACA
* *
26036783 TGTAAGATCATATCTGGGATA-TGGCAT
1 TGTAAGA-CATAGCTGGGCTATTGGCAT
26036810 TGGTATGGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
42 7 0.11
43 54 0.87
44 1 0.02
ACGTcount: A:0.30, C:0.14, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACATAGCTGGGCTATTGGCATCGATATGAAATTACA
Found at i:26038342 original size:53 final size:54
Alignment explanation
Indices: 26038159--26038374 Score: 249
Period size: 55 Copynumber: 4.0 Consensus size: 54
26038149 ATTAGGGTTT
* *
26038159 AAGGATACCATGTAAGACCATGCCAAGGCATTGCAATGGATAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGG-TAA-GTTTCATAAGGC
* * * * *
26038214 AAGGATATCATGTAAGACCATGTCAAGACGTGGCATTGATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTC-ATAAGGC
* * * *
26038269 AAATG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTAAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCATAAGGC
* * *
26038322 AAGGATACCATGTAAGACCATGTCGAGACATGGCAATGGTAAGTTTCAAAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCATAAGG
26038375 ATACCACATA
Statistics
Matches: 135, Mismatches: 21, Indels: 11
0.81 0.13 0.07
Matches are distributed among these distances:
52 3 0.02
53 45 0.33
54 14 0.10
55 70 0.52
56 3 0.02
ACGTcount: A:0.35, C:0.17, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCAATGGTAAGTTTCATAAGGC
Found at i:26038365 original size:108 final size:110
Alignment explanation
Indices: 26038166--26038368 Score: 313
Period size: 108 Copynumber: 1.9 Consensus size: 110
26038156 TTTAAGGATA
* *
26038166 CCATGTAAGACCATGCCAAGGCATTGCAATGGATAAGGTTTCTAAGGCAAGGATATCATGTAAGA
1 CCATGTAAGACCATGCCAAGGCATGGCAATGGATAAGGTTTCTAAGGCAAGGATACCATGTAAGA
* *
26038231 CCATGTCAAGACGTGGCATTGATAAGTTTCTATAAGGCAAATGTC
66 CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAATGTC
*
26038276 CCATGTAAGACCATGCCAAGGCATGGCATTGG-TAA-G-TTCATAAGGCAAGGATACCATGTAAG
1 CCATGTAAGACCATGCCAAGGCATGGCAATGGATAAGGTTTC-TAAGGCAAGGATACCATGTAAG
* *
26038338 ACCATGTCGAGACATGGCAATGGTAAGTTTC
65 ACCATGTCAAGACATGGCAATGATAAGTTTC
26038369 AAAAGGATAC
Statistics
Matches: 85, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
107 3 0.04
108 49 0.58
109 3 0.04
110 30 0.35
ACGTcount: A:0.33, C:0.18, G:0.25, T:0.24
Consensus pattern (110 bp):
CCATGTAAGACCATGCCAAGGCATGGCAATGGATAAGGTTTCTAAGGCAAGGATACCATGTAAGA
CCATGTCAAGACATGGCAATGATAAGTTTCTATAAGGCAAATGTC
Found at i:26048240 original size:39 final size:40
Alignment explanation
Indices: 26048172--26048337 Score: 203
Period size: 40 Copynumber: 4.2 Consensus size: 40
26048162 ACTTATCTTT
* ** * *
26048172 GGGATTTAG-CCGGATATAACCACTCGCAC-AAGGCCGTC
1 GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
* * *
26048210 GGGTCTTAGCCCGGATATGGTCACTAGCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
* *
26048250 GGGACTTAGCCCGGATATAGTAACTCCCACAAATGCCTTC
1 GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
*
26048290 GGGACTTAGCCCGGA-ATTAGTAACTCGCACAAATGCCTTC
1 GGGACTTAGCCCGGATA-TAGTCACTCGCACAAATGCCTTC
26048330 GGGACTTA
1 GGGACTTA
26048338 ACCCCGTTAG
Statistics
Matches: 111, Mismatches: 14, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
38 7 0.06
39 17 0.15
40 87 0.78
ACGTcount: A:0.26, C:0.28, G:0.24, T:0.22
Consensus pattern (40 bp):
GGGACTTAGCCCGGATATAGTCACTCGCACAAATGCCTTC
Found at i:26048262 original size:40 final size:40
Alignment explanation
Indices: 26048193--26048337 Score: 204
Period size: 40 Copynumber: 3.6 Consensus size: 40
26048183 GGATATAACC
* * * * *
26048193 ACTCGCAC-AAGGCCGTCGGGTCTTAGCCCGGATATGGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
26048232 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
*
26048272 ACTCCCACAAATGCCTTCGGGACTTAGCCCGGA-ATTAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATA-TAGTA
26048312 ACTCGCACAAATGCCTTCGGGACTTA
1 ACTCGCACAAATGCCTTCGGGACTTA
26048338 ACCCCGTTAG
Statistics
Matches: 95, Mismatches: 9, Indels: 3
0.89 0.08 0.03
Matches are distributed among these distances:
39 8 0.08
40 87 0.92
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATATAGTA
Found at i:26051657 original size:53 final size:54
Alignment explanation
Indices: 26051474--26051689 Score: 231
Period size: 55 Copynumber: 4.0 Consensus size: 54
26051464 ATTAGGGTTT
* **
26051474 AAGGATACCATGTAAGACCATGCCAAGGCATCACAATTGGTAAGGTTTC-TAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGC-ATTGGTAA-GTTTCATAAGGC
* * **
26051529 AAGGATATCATGTAAGACCATGTCAAGACATGGCATTAATAAGTTTCTATAAGGC
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTC-ATAAGGC
* * *
26051584 AAAGG-TCCCATGTAAGACCATGCCAAGGCATGGCATTGGTGAG-TTCATAAGGC
1 -AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
* * * * * *
26051637 AAGGATACCATGTTAGACCATGTCGAGACATGGCAATGGTAAGTATCAAAAGG
1 AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGG
26051690 ATACCACATA
Statistics
Matches: 133, Mismatches: 23, Indels: 11
0.80 0.14 0.07
Matches are distributed among these distances:
52 4 0.03
53 43 0.32
54 16 0.12
55 66 0.50
56 4 0.03
ACGTcount: A:0.35, C:0.18, G:0.25, T:0.23
Consensus pattern (54 bp):
AAGGATACCATGTAAGACCATGCCAAGACATGGCATTGGTAAGTTTCATAAGGC
Found at i:26053604 original size:27 final size:26
Alignment explanation
Indices: 26053560--26053611 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
26053550 CTTGCTGCAA
*
26053560 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
26053587 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
26053612 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:26059140 original size:49 final size:49
Alignment explanation
Indices: 26058974--26059211 Score: 296
Period size: 49 Copynumber: 4.8 Consensus size: 49
26058964 TGAGGTCGCA
* * * * *
26058974 TGTGTAGTACTAAGTGCAGGCTACTATGCGTACCCGAAAACTGTGATCATG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAA-T-TGGTCACG
* * **
26059025 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATT-GGTCACG
*
26059075 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCGGATAATTGGTCACG
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* * * * *
26059124 TGTGTAGTACTAAGTGCAAGCTACTACGTGTACCGGATAATTGGTCGCA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
* *
26059173 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCAGATA
1 TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATA
26059212 GCTTTGGCTA
Statistics
Matches: 163, Mismatches: 23, Indels: 4
0.86 0.12 0.02
Matches are distributed among these distances:
49 87 0.53
50 43 0.26
51 33 0.20
ACGTcount: A:0.26, C:0.18, G:0.27, T:0.29
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTATGTGTACCAGATAATTGGTCACG
Found at i:26066736 original size:18 final size:19
Alignment explanation
Indices: 26066715--26066776 Score: 56
Period size: 21 Copynumber: 3.2 Consensus size: 19
26066705 CGCAATTTTC
26066715 TTTTCTTTCTCACAT-TC-T
1 TTTTCTTTCTCA-ATCTCAT
**
26066733 TTTTCAATCTCAATCTCAT
1 TTTTCTTTCTCAATCTCAT
*
26066752 TTTTCTTTCTCTCACTCTCAT
1 TTTTC-TT-TCTCAATCTCAT
26066773 TTTT
1 TTTT
26066777 TTCTTTCATT
Statistics
Matches: 35, Mismatches: 5, Indels: 5
0.78 0.11 0.11
Matches are distributed among these distances:
17 2 0.06
18 12 0.34
19 6 0.17
21 15 0.43
ACGTcount: A:0.15, C:0.27, G:0.00, T:0.58
Consensus pattern (19 bp):
TTTTCTTTCTCAATCTCAT
Found at i:26070078 original size:41 final size:40
Alignment explanation
Indices: 26070021--26070329 Score: 264
Period size: 41 Copynumber: 7.6 Consensus size: 40
26070011 AAAAATGACG
26070021 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACTCCTA
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTAC-CCTA
* * * ** *
26070062 AATTGCACATGCGTG-CCCTGTTAGTACTTCAATACCCCA
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTA
** * * * * *
26070101 GAATTGCACATATTTTCCCCTGTTTGTTCTTTGGTACCGTGA
1 -AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCT-A
* *
26070143 AA-TG-ACCATACGTGCCCCTGTTTGTACTTTGGTACCCCTA
1 AATTGCA-CATACGTGCCCCTATTTGTACTTCGGTA-CCCTA
* * * * * * *
26070183 AATTACACACACGTACTCCTATTTCTACTTTGGTACCCTTG
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC-TA
* * *
26070224 AATTGCACATACGTACCCCTGTTTGTACTTCGGTACCGCTG
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTACC-CTA
* *
26070265 AATTGCATATACGTGCCCCTATTTGTACTTCAGTACCCTCTA
1 AATTGCACATACGTGCCCCTATTTGTACTTCGGTA-CC-CTA
*
26070307 AATTGCACATACGTACCCCTATT
1 AATTGCACATACGTGCCCCTATT
26070330 GAAAATCACT
Statistics
Matches: 215, Mismatches: 43, Indels: 19
0.78 0.16 0.07
Matches are distributed among these distances:
39 4 0.02
40 59 0.27
41 124 0.58
42 28 0.13
ACGTcount: A:0.22, C:0.28, G:0.15, T:0.34
Consensus pattern (40 bp):
AATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTA
Found at i:26070106 original size:40 final size:42
Alignment explanation
Indices: 26070020--26070112 Score: 111
Period size: 40 Copynumber: 2.3 Consensus size: 42
26070010 GAAAAATGAC
* ** *
26070020 GAATTGCACATACGTGCCCCTATTTGTACTTCGGTACTCCTA
1 GAATTGCACATACGTGCCCCTATTAGTACTTCAATACTCCCA
* *
26070062 -AATTGCACATGCGTG-CCCTGTTAGTACTTCAATAC-CCCA
1 GAATTGCACATACGTGCCCCTATTAGTACTTCAATACTCCCA
26070101 GAATTGCACATA
1 GAATTGCACATA
26070113 TTTTCCCCTG
Statistics
Matches: 43, Mismatches: 7, Indels: 4
0.80 0.13 0.07
Matches are distributed among these distances:
39 3 0.07
40 26 0.60
41 14 0.33
ACGTcount: A:0.26, C:0.28, G:0.16, T:0.30
Consensus pattern (42 bp):
GAATTGCACATACGTGCCCCTATTAGTACTTCAATACTCCCA
Found at i:26070121 original size:81 final size:80
Alignment explanation
Indices: 26070020--26070320 Score: 284
Period size: 81 Copynumber: 3.7 Consensus size: 80
26070010 GAAAAATGAC
* *
26070020 GAATTGCACATACGTGCCCCTATTTGTACTTCGGTACTCCTAAATTGCACATGCGTGCCCTGTTA
1 GAATTGCACATACGTGCCCCTATTTGTACTTCGGTAC-CCTAAATTGCACATACGTGCCCTGTTT
**
26070085 GTACTTCAATACCCCA
65 GTACTTCGGTACCCCA
** * * * * *
26070101 GAATTGCACATATTTTCCCCTGTTTGTTCTTTGGTACCGTGAAA-TG-ACCATACGTGCCCCTGT
1 GAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCT-AAATTGCA-CATACGTG-CCCTGT
*
26070164 TTGTACTTTGGTACCCCTA
63 TTGTACTTCGGTACCCC-A
* * * * * * * *
26070183 -AATTACACACACGTACTCCTATTTCTACTTTGGTACCCTTGAATTGCACATACGTACCCCTGTT
1 GAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCC-TAAATTGCACATACGT-GCCCTGTT
* *
26070247 TGTACTTCGGTACCGCT
64 TGTACTTCGGTACCCCA
* *
26070264 GAATTGCATATACGTGCCCCTATTTGTACTTCAGTACCCTCTAAATTGCACATACGT
1 GAATTGCACATACGTGCCCCTATTTGTACTTCGGTA-CC-CTAAATTGCACATACGT
26070321 ACCCCTATTG
Statistics
Matches: 173, Mismatches: 36, Indels: 20
0.76 0.16 0.09
Matches are distributed among these distances:
79 1 0.01
80 11 0.06
81 83 0.48
82 59 0.34
83 18 0.10
84 1 0.01
ACGTcount: A:0.22, C:0.28, G:0.16, T:0.34
Consensus pattern (80 bp):
GAATTGCACATACGTGCCCCTATTTGTACTTCGGTACCCTAAATTGCACATACGTGCCCTGTTTG
TACTTCGGTACCCCA
Found at i:26083299 original size:11 final size:11
Alignment explanation
Indices: 26083283--26083313 Score: 62
Period size: 11 Copynumber: 2.8 Consensus size: 11
26083273 TTATGATATG
26083283 ATTTCGTGAAA
1 ATTTCGTGAAA
26083294 ATTTCGTGAAA
1 ATTTCGTGAAA
26083305 ATTTCGTGA
1 ATTTCGTGA
26083314 TGAAATTCTG
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 20 1.00
ACGTcount: A:0.32, C:0.10, G:0.19, T:0.39
Consensus pattern (11 bp):
ATTTCGTGAAA
Found at i:26092130 original size:56 final size:56
Alignment explanation
Indices: 26092004--26092123 Score: 240
Period size: 56 Copynumber: 2.1 Consensus size: 56
26091994 NNNNNNNNNN
26092004 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26092060 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
1 TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
26092116 TTGCCCAT
1 TTGCCCAT
26092124 CATTCTTTGT
Statistics
Matches: 64, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
56 64 1.00
ACGTcount: A:0.23, C:0.24, G:0.09, T:0.44
Consensus pattern (56 bp):
TTGCCCATGCTTCTTATTTTATTCTTCCATTAACACAACATGTTTCATGACATGTT
Found at i:26096699 original size:20 final size:20
Alignment explanation
Indices: 26096674--26096712 Score: 78
Period size: 20 Copynumber: 1.9 Consensus size: 20
26096664 TAGCAAGGAG
26096674 ATAGTACACTTTAGGCATTC
1 ATAGTACACTTTAGGCATTC
26096694 ATAGTACACTTTAGGCATT
1 ATAGTACACTTTAGGCATT
26096713 TATCGGGTGT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.31, C:0.18, G:0.15, T:0.36
Consensus pattern (20 bp):
ATAGTACACTTTAGGCATTC
Done.