Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 73 of 297
Found at i:26098732 original size:79 final size:81
Alignment explanation
Indices: 26098630--26098814 Score: 238
Period size: 79 Copynumber: 2.3 Consensus size: 81
26098620 GCTACTCGTT
* *
26098630 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
*
26098693 GGAT-TTAGTAAC-TCGCA
64 GGATATT-GTAACTTAGCA
* **
26098710 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCGG
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
*
26098774 ATATTGTCACTTAGCA
66 ATATTGTAACTTAGCA
26098790 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26098815 CATCATTCAA
Statistics
Matches: 93, Mismatches: 7, Indels: 10
0.85 0.06 0.09
Matches are distributed among these distances:
78 3 0.03
79 54 0.58
80 36 0.39
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (81 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGG
ATATTGTAACTTAGCA
Found at i:26098814 original size:40 final size:41
Alignment explanation
Indices: 26098630--26098814 Score: 240
Period size: 40 Copynumber: 4.6 Consensus size: 41
26098620 GCTACTCGTT
* *
26098630 CAAATGCCTTCGGGACATAGCCCGGTTA-TAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
26098670 CAAATGCCTTCGGGACTTAACCCGGAT-TTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
*
26098710 CAAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
* * *
26098749 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATTAGTAAC-TCGCA
26098790 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26098815 CATCATTCAA
Statistics
Matches: 128, Mismatches: 10, Indels: 14
0.84 0.07 0.09
Matches are distributed among these distances:
38 2 0.02
39 33 0.26
40 79 0.62
41 14 0.11
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.25
Consensus pattern (41 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATTAGTAACTCGCA
Found at i:26104564 original size:19 final size:19
Alignment explanation
Indices: 26104542--26104591 Score: 75
Period size: 19 Copynumber: 2.7 Consensus size: 19
26104532 CCATGTGGGG
*
26104542 CACATGAGCCCATAGGGCC
1 CACACGAGCCCATAGGGCC
*
26104561 CACACGAGCCCATGGGGCC
1 CACACGAGCCCATAGGGCC
26104580 CACACG-GCCCAT
1 CACACGAGCCCAT
26104592 TTTAGCCCAA
Statistics
Matches: 29, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
18 6 0.21
19 23 0.79
ACGTcount: A:0.24, C:0.42, G:0.26, T:0.08
Consensus pattern (19 bp):
CACACGAGCCCATAGGGCC
Found at i:26110588 original size:40 final size:40
Alignment explanation
Indices: 26110543--26110735 Score: 226
Period size: 40 Copynumber: 4.8 Consensus size: 40
26110533 ATAACCACAA
* * *
26110543 GCACAATTGCCTTCGGGTCTTAACCCGGGTATAGCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
*
26110583 GCACAAATGCCTTCGGGTCTTAGCCCGGATATATCAACTC
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * *
26110623 GCACAAATGCCTTCGGGTCTTAGCCCGGATAAAACCACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
* * * * *
26110663 GCATAAATGCCTTCGGGACTTAGCCCGGATAAAATC-ACTA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGAT-ATAGCAACTC
* * *
26110703 GCATAAATGCCTCCGGGACTTAGCCCGGATATA
1 GCACAAATGCCTTCGGGTCTTAGCCCGGATATA
26110736 TCATTCAAAT
Statistics
Matches: 139, Mismatches: 13, Indels: 3
0.90 0.08 0.02
Matches are distributed among these distances:
39 2 0.01
40 133 0.96
41 4 0.03
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.23
Consensus pattern (40 bp):
GCACAAATGCCTTCGGGTCTTAGCCCGGATATAGCAACTC
Found at i:26119796 original size:37 final size:37
Alignment explanation
Indices: 26119746--26119824 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
26119736 TTATTACGAA
* * *
26119746 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
26119783 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
26119820 GTCTT
1 GTCTT
26119825 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:26120021 original size:47 final size:47
Alignment explanation
Indices: 26119943--26120353 Score: 750
Period size: 47 Copynumber: 8.7 Consensus size: 47
26119933 CCCTTCGGGA
* * * * * *
26119943 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26119990 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26120037 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26120084 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26120131 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26120178 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26120225 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26120272 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26120319 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
26120354 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 10, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
47 354 1.00
ACGTcount: A:0.29, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26123745 original size:40 final size:40
Alignment explanation
Indices: 26123715--26124054 Score: 384
Period size: 40 Copynumber: 8.5 Consensus size: 40
26123705 AGCATGATTA
* * * *
26123715 CTCTTCGGGACCTAGCCCGGATATAACACCAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* ** * *
26123755 CTCTTTGGGGTTTAGCACGGATATATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
*
26123795 CTCTTCGGAACTTAGCCCGGATACAT-ACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
**
26123834 CTCTTCGAAACTTAGCCCGGATACATCACTAGCACGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
26123874 CTCTTCGGAACTTAGCCCGGATACATCACTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
* *
26123914 CTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATG
1 CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
** * * *
26123954 CTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAATG
1 CTCTTCGGGACTTAGCCCGGATACA-TCACTAGCACGAATG
* ** *
26123995 C-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCAC-AAAG
1 CTCTTCGGGA-CTTAGCCCGGATA-CATCAC-TAGCACGAATG
26124035 C-CTTCGGGACTTAGCCCGGA
1 CTCTTCGGGACTTAGCCCGGA
26124055 CATCGTTCGA
Statistics
Matches: 261, Mismatches: 33, Indels: 12
0.85 0.11 0.04
Matches are distributed among these distances:
39 41 0.16
40 201 0.77
41 19 0.07
ACGTcount: A:0.25, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATG
Found at i:26123927 original size:119 final size:119
Alignment explanation
Indices: 26123727--26124054 Score: 374
Period size: 119 Copynumber: 2.7 Consensus size: 119
26123717 CTTCGGGACC
* * * *** * *
26123727 TAGCCCGGATATAACACCAGCACGAATGCTCTTTGGGGTTTAGCACGGATATATCACTAGCACGA
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCA-GA
*
26123792 ATGCTCTTCGGAACTTAGCCCGGATACAT-ACTAGCACGAATGCTCTTCGAAACT
65 ATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAACT
*
26123846 TAGCCCGGATACATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCATGA
1 TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCA-GA
* * **
26123911 ATGCTCTTCGGGACTTAGCCCGGATACATCGCTAGCATGAATGCTCTTCGGGACT
65 ATGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAACT
* * * * * * **
26123966 TAGCCCGGATTTAGTAACTCGCACCAATGC-CTTCGGATCTTAGTCCGGATATGGTCACTTAGCA
1 TAGCCCGGATATA-TCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATA-CATCAC-TAGCA
* *
26124030 CAAAGC-CTTCGGGACTTAGCCCGGA
63 GAATGCTCTTCGGGACTTAGCCCGGA
26124055 CATCGTTCGA
Statistics
Matches: 179, Mismatches: 26, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
119 83 0.46
120 70 0.39
121 21 0.12
122 5 0.03
ACGTcount: A:0.26, C:0.27, G:0.22, T:0.24
Consensus pattern (119 bp):
TAGCCCGGATATATCACTAGCACGAATGCTCTTCGGAACTTAGCCCGGATACATCACTAGCAGAA
TGCTCTTCGGGACTTAGCCCGGATACATCACTAGCACGAATGCTCTTCGAAACT
Found at i:26124399 original size:29 final size:29
Alignment explanation
Indices: 26124360--26124438 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
26124350 CTTAATAATC
*
26124360 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
26124390 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
26124419 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
26124439 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:26124481 original size:43 final size:43
Alignment explanation
Indices: 26124420--26124522 Score: 197
Period size: 43 Copynumber: 2.4 Consensus size: 43
26124410 TGCATTTCAA
26124420 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
*
26124463 GCCCGAACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
1 GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
26124506 GCCCGCACACTTAGTGC
1 GCCCGCACACTTAGTGC
26124523 TGAAAACCAA
Statistics
Matches: 58, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
43 58 1.00
ACGTcount: A:0.27, C:0.35, G:0.16, T:0.22
Consensus pattern (43 bp):
GCCCGCACACTTAGTGCCAATCTCACAACCGTGAACACTTATT
Found at i:26126625 original size:47 final size:47
Alignment explanation
Indices: 26126547--26126961 Score: 704
Period size: 47 Copynumber: 8.7 Consensus size: 47
26126537 CCCTTCGGGA
* * * * * *
26126547 CTTATCACATTTATACACTTTCACATCCATCACGTTGGCCACTCGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
* *
26126594 CCTGTCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26126641 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26126688 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26126735 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26126782 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
*
26126829 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAAGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26126878 CTTATCACATATATATACACTTTCACATTCATCACATCGGCCATTAGGC
1 CTTATCAC--ATATATACACTTTCACATTCATCACATCGGCCATTAGGC
26126927 CTTATCACATATATACACTTTCACATTCATCACAT
1 CTTATCACATATATACACTTTCACATTCATCACAT
26126962 AGAATCCTAA
Statistics
Matches: 354, Mismatches: 12, Indels: 4
0.96 0.03 0.01
Matches are distributed among these distances:
47 259 0.73
49 95 0.27
ACGTcount: A:0.30, C:0.30, G:0.08, T:0.32
Consensus pattern (47 bp):
CTTATCACATATATACACTTTCACATTCATCACATCGGCCATTAGGC
Found at i:26132148 original size:43 final size:43
Alignment explanation
Indices: 26132004--26132169 Score: 176
Period size: 43 Copynumber: 3.9 Consensus size: 43
26131994 ATTCTTAATT
* ** *
26132004 TTTGATTTCGTGTAAGACCATGTCTGGGACGTTGACATCGACT-
1 TTTGATTACGTGTAAGACCATGTCTGGGACAATGGCATCGA-TA
* * *
26132047 TATGATTTACGTGTAAGACCATGTCTGGGAC-ATCGTATCG-TA
1 TTTGA-TTACGTGTAAGACCATGTCTGGGACAATGGCATCGATA
* *
26132089 TTTGATTTCGTGTAAGACCCTGTCTGGGACAATGGCATCGATA
1 TTTGATTACGTGTAAGACCATGTCTGGGACAATGGCATCGATA
* * * *
26132132 TTTGATTACATGTAAGACCACGTCTTGGACATTGGCAT
1 TTTGATTACGTGTAAGACCATGTCTGGGACAATGGCAT
26132170 TGTGTGAGCT
Statistics
Matches: 102, Mismatches: 17, Indels: 8
0.80 0.13 0.06
Matches are distributed among these distances:
41 24 0.24
42 11 0.11
43 43 0.42
44 24 0.24
ACGTcount: A:0.24, C:0.18, G:0.24, T:0.34
Consensus pattern (43 bp):
TTTGATTACGTGTAAGACCATGTCTGGGACAATGGCATCGATA
Found at i:26144910 original size:12 final size:13
Alignment explanation
Indices: 26144890--26144937 Score: 55
Period size: 12 Copynumber: 3.8 Consensus size: 13
26144880 AAATTTACTC
26144890 TTAATATTTTCGG
1 TTAATATTTTCGG
* **
26144903 TTAA-ATTTGCTC
1 TTAATATTTTCGG
26144915 TTAATATTTTCGG
1 TTAATATTTTCGG
26144928 TTAA-ATTTTC
1 TTAATATTTTC
26144938 CCTTATTATT
Statistics
Matches: 28, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
12 15 0.54
13 13 0.46
ACGTcount: A:0.25, C:0.10, G:0.10, T:0.54
Consensus pattern (13 bp):
TTAATATTTTCGG
Found at i:26144948 original size:25 final size:25
Alignment explanation
Indices: 26144863--26144935 Score: 110
Period size: 25 Copynumber: 2.9 Consensus size: 25
26144853 GTTAATTTGT
* * *
26144863 TCTTAATAATTCCAGTTAAATTTAC
1 TCTTAATATTTTCGGTTAAATTTAC
*
26144888 TCTTAATATTTTCGGTTAAATTTGC
1 TCTTAATATTTTCGGTTAAATTTAC
26144913 TCTTAATATTTTCGGTTAAATTT
1 TCTTAATATTTTCGGTTAAATTT
26144936 TCCCTTATTA
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
25 44 1.00
ACGTcount: A:0.29, C:0.12, G:0.08, T:0.51
Consensus pattern (25 bp):
TCTTAATATTTTCGGTTAAATTTAC
Found at i:26145850 original size:45 final size:45
Alignment explanation
Indices: 26145771--26145932 Score: 204
Period size: 45 Copynumber: 3.6 Consensus size: 45
26145761 TATCATACAG
* * *
26145771 TACTATTCGGGCCTTTAAGACTAGCAGGTTATAATGCCGGTGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* * *
26145816 TACTATTCGGGCCTTTGAGCCTAGTAGGCCATAATGCCGATGAGA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
* *
26145861 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAAA
1 TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
**
26145906 TGA-TATT-GGG-CTCCGAGCCTAGCAGGC
1 T-ACTATTCGGGCCTTTGAGCCTAGCAGGC
26145933 AAAATGTCGA
Statistics
Matches: 103, Mismatches: 13, Indels: 4
0.86 0.11 0.03
Matches are distributed among these distances:
43 15 0.15
44 3 0.03
45 84 0.82
46 1 0.01
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.27
Consensus pattern (45 bp):
TACTATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGA
Found at i:26157622 original size:44 final size:43
Alignment explanation
Indices: 26157536--26157707 Score: 118
Period size: 43 Copynumber: 4.0 Consensus size: 43
26157526 CATAGGATTC
* * * * *
26157536 CAATATGAGATTTCGTGTAAGACCGCGTTTGGGACGTTGGCAT
1 CAATATGAGATTTCGTGTAAGACCACGTCTAGGACATCGGCAT
* *
26157579 CAATTTGAGATTTACGTGTAAGACCATGTCTAGGACATCGGCAT
1 CAATATGAGATTT-CGTGTAAGACCACGTCTAGGACATCGGCAT
* * *
26157623 C-GTAT-ATGATTTTGTGTAAGACC-CTGTCTGGGACAGT-GGCAT
1 CAATATGA-GATTTCGTGTAAGACCAC-GTCTAGGACA-TCGGCAT
** ** * * * *
26157665 TGATATTTGATTACATGTAAGACCACGTCTGGGACATTGGCAT
1 CAATATGAGATTTCGTGTAAGACCACGTCTAGGACATCGGCAT
26157708 TGTACGAGCT
Statistics
Matches: 103, Mismatches: 18, Indels: 16
0.75 0.13 0.12
Matches are distributed among these distances:
42 26 0.25
43 51 0.50
44 26 0.25
ACGTcount: A:0.26, C:0.17, G:0.26, T:0.31
Consensus pattern (43 bp):
CAATATGAGATTTCGTGTAAGACCACGTCTAGGACATCGGCAT
Found at i:26157664 original size:42 final size:42
Alignment explanation
Indices: 26157590--26157707 Score: 123
Period size: 43 Copynumber: 2.8 Consensus size: 42
26157580 AATTTGAGAT
* *
26157590 TTACGTGTAAGACCATGTCTAGGACATCGGCATCG-TATATGA
1 TTACGTGTAAGACCCTGTCTGGGACAT-GGCATCGATATATGA
** * *
26157632 TTTTGTGTAAGACCCTGTCTGGGACAGTGGCATTGATATTTGA
1 TTACGTGTAAGACCCTGTCTGGGACA-TGGCATCGATATATGA
*
26157675 TTACATGTAAGACCAC-GTCTGGGACATTGGCAT
1 TTACGTGTAAGACC-CTGTCTGGGACA-TGGCAT
26157708 TGTACGAGCT
Statistics
Matches: 63, Mismatches: 10, Indels: 5
0.81 0.13 0.06
Matches are distributed among these distances:
42 28 0.44
43 34 0.54
44 1 0.02
ACGTcount: A:0.25, C:0.18, G:0.25, T:0.31
Consensus pattern (42 bp):
TTACGTGTAAGACCCTGTCTGGGACATGGCATCGATATATGA
Found at i:26160962 original size:22 final size:22
Alignment explanation
Indices: 26160862--26160995 Score: 119
Period size: 22 Copynumber: 5.8 Consensus size: 22
26160852 GACTCACTAT
*
26160862 AGCTCGTATGAGCTTACCAATATATC
1 AGCTCGTATGAGCTTA-C--TGT-TC
* * *
26160888 TGCTCGTAAGAGCTTACTATTTTC
1 AGCTCGTATGAGCTTAC--TGTTC
*
26160912 AGCTCAT-TGGAGCTTA-TCGTTTC
1 AGCTCGTAT-GAGCTTACT-G-TTC
26160935 AGCTCGTATGAGCTTACTGTTC
1 AGCTCGTATGAGCTTACTGTTC
*
26160957 AACTCGTATGAGCTTACTGTTC
1 AGCTCGTATGAGCTTACTGTTC
26160979 AGCTCGTATGAGCTTAC
1 AGCTCGTATGAGCTTAC
26160996 CGTTTTATCA
Statistics
Matches: 92, Mismatches: 11, Indels: 14
0.79 0.09 0.12
Matches are distributed among these distances:
21 1 0.01
22 40 0.43
23 17 0.18
24 16 0.17
25 4 0.04
26 14 0.15
ACGTcount: A:0.22, C:0.22, G:0.19, T:0.36
Consensus pattern (22 bp):
AGCTCGTATGAGCTTACTGTTC
Found at i:26161000 original size:67 final size:68
Alignment explanation
Indices: 26160890--26161024 Score: 159
Period size: 67 Copynumber: 2.0 Consensus size: 68
26160880 AATATATCTG
* * *
26160890 CTCGTAAGAGCTTACTATTTTCAGCTCATTGGAGCTTATCGTTTCAGCTC-GTATGAGCTTACTG
1 CTCGTAAGAGCTTAC-ATGTTCAGCTCATTGGAGCTTACCGTTTCAGCACAGTA-GAGCTTACTG
26160954 TTCAA
64 TTCAA
* * * *
26160959 CTCGTATGAGCTTAC-TGTTCAGCTCGTAT-GAGCTTACCGTTTTATCACAGTAGAGCTTACTGT
1 CTCGTAAGAGCTTACATGTTCAGCTCAT-TGGAGCTTACCGTTTCAGCACAGTAGAGCTTACTGT
26161022 TCA
65 TCA
26161025 TCATCTCAAG
Statistics
Matches: 57, Mismatches: 7, Indels: 6
0.81 0.10 0.09
Matches are distributed among these distances:
67 39 0.68
68 4 0.07
69 14 0.25
ACGTcount: A:0.21, C:0.22, G:0.19, T:0.37
Consensus pattern (68 bp):
CTCGTAAGAGCTTACATGTTCAGCTCATTGGAGCTTACCGTTTCAGCACAGTAGAGCTTACTGTT
CAA
Found at i:26166163 original size:8 final size:7
Alignment explanation
Indices: 26166143--26166195 Score: 61
Period size: 7 Copynumber: 7.3 Consensus size: 7
26166133 ACACAAATTT
*
26166143 CTAACCC
1 CTAAACC
26166150 CTAAACC
1 CTAAACC
26166157 CTAAAACC
1 CT-AAACC
26166165 CTAAACC
1 CTAAACC
*
26166172 ATAAAACC
1 CT-AAACC
*
26166180 TTAAACC
1 CTAAACC
26166187 CTAAACC
1 CTAAACC
26166194 CT
1 CT
26166196 CCTTAATCAT
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
7 27 0.68
8 13 0.32
ACGTcount: A:0.43, C:0.40, G:0.00, T:0.17
Consensus pattern (7 bp):
CTAAACC
Found at i:26166168 original size:15 final size:15
Alignment explanation
Indices: 26166148--26166195 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
26166138 AATTTCTAAC
26166148 CCCTAAACCCTAAAA
1 CCCTAAACCCTAAAA
*
26166163 CCCTAAACCATAAAA
1 CCCTAAACCCTAAAA
*
26166178 CCTTAAACCCT-AAA
1 CCCTAAACCCTAAAA
26166192 CCCT
1 CCCT
26166196 CCTTAATCAT
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
14 6 0.21
15 23 0.79
ACGTcount: A:0.44, C:0.40, G:0.00, T:0.17
Consensus pattern (15 bp):
CCCTAAACCCTAAAA
Found at i:26174329 original size:39 final size:40
Alignment explanation
Indices: 26174284--26174468 Score: 178
Period size: 40 Copynumber: 4.7 Consensus size: 40
26174274 GCTCCTCGTT
* * *
26174284 CAAATGCCTTCGGGACATAGCCCGGTTTTAGTAACTCACA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
**
26174324 C-AATGCCTTCGGGACATAACCCGGATTTAACAACTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * *
26174363 CGAATGCCTTCGGGACTTAACCCGGATTTAGTATCTCGCA
1 CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
* * * * * * *
26174403 CAAAGGCCTTC-GGATCTTAATCCGGATATATTCACTTAGCA
1 CAAATGCCTTCGGGA-CATAACCCGGATTTAGTAAC-TCGCA
* *
26174444 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACATAACCCGGA
26174469 CAGCATTCAA
Statistics
Matches: 122, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 37 0.30
40 74 0.61
41 11 0.09
ACGTcount: A:0.27, C:0.28, G:0.21, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACATAACCCGGATTTAGTAACTCGCA
Found at i:26174384 original size:40 final size:39
Alignment explanation
Indices: 26174251--26174468 Score: 165
Period size: 40 Copynumber: 5.5 Consensus size: 39
26174241 AAATCACGTA
* * **
26174251 CCTTCGGGATTTAA-CCGGATATAGCTCCTCGTTCA-AATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCG--CACAATG
* * * * *
26174290 CCTTCGGGACATAGCCCGGTTTTAGTAACTCACACAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
* *
26174329 CCTTCGGGACATAACCCGGATTTAACAACTCGCACGAATG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * *
26174369 CCTTCGGGACTTAACCCGGATTTAGTATCTCGCACAAAGG
1 CCTTCGGGACTTAACCCGGATTTAGCAACTCGCAC-AATG
* * * * *
26174409 CCTTC-GGATCTTAATCCGGATATATTC-ACTTAGCACAAAG
1 CCTTCGGGA-CTTAACCCGGATTTA-GCAAC-TCGCACAATG
*
26174449 CCTTCGGGACTTAGCCCGGA
1 CCTTCGGGACTTAACCCGGA
26174469 CAGCATTCAA
Statistics
Matches: 143, Mismatches: 29, Indels: 13
0.77 0.16 0.07
Matches are distributed among these distances:
38 2 0.01
39 48 0.34
40 85 0.59
41 8 0.06
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.26
Consensus pattern (39 bp):
CCTTCGGGACTTAACCCGGATTTAGCAACTCGCACAATG
Found at i:26175954 original size:30 final size:30
Alignment explanation
Indices: 26175920--26175979 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
26175910 TTCCCGAGCC
*
26175920 TAGGGGCAAAA-GTGTAATTATGCAAAAGTT
1 TAGGGACAAAATG-GTAATTATGCAAAAGTT
* *
26175950 TAGGGACAAAATGGTAATTTTGCTAAAGTT
1 TAGGGACAAAATGGTAATTATGCAAAAGTT
26175980 CGTATTAAAG
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
30 25 0.96
31 1 0.04
ACGTcount: A:0.38, C:0.07, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGACAAAATGGTAATTATGCAAAAGTT
Found at i:26183139 original size:12 final size:12
Alignment explanation
Indices: 26183122--26183153 Score: 64
Period size: 12 Copynumber: 2.7 Consensus size: 12
26183112 GAGTTAAGAG
26183122 TTTGGGAAACTA
1 TTTGGGAAACTA
26183134 TTTGGGAAACTA
1 TTTGGGAAACTA
26183146 TTTGGGAA
1 TTTGGGAA
26183154 TTCTTCTATT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.31, C:0.06, G:0.28, T:0.34
Consensus pattern (12 bp):
TTTGGGAAACTA
Found at i:26186805 original size:40 final size:40
Alignment explanation
Indices: 26186731--26187204 Score: 607
Period size: 40 Copynumber: 11.6 Consensus size: 40
26186721 AACCCAAGTA
* * *
26186731 CCTTCGGGATTTAG-CCAGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
*
26186770 CCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
26186810 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
26186853 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
26186893 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
26186936 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
26186976 CCTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATG
*
26187019 CCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
26187059 CCTTCGGGACTTAGCCCGGATATAGGAACTACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATA-G-TC-ACTAGCACAAATG
* *
26187102 CCTTTGGGACTTCGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* ** *
26187142 CCTTCAGGACTTAGCCCGGATATAGGAACTTGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
26187182 CCTTCGGGACTTAGCCCGGATAT
1 CCTTCGGGACTTAGCCCGGATAT
26187205 CATCCGAATA
Statistics
Matches: 385, Mismatches: 30, Indels: 39
0.85 0.07 0.09
Matches are distributed among these distances:
39 15 0.04
40 220 0.57
41 3 0.01
42 2 0.01
43 142 0.37
44 3 0.01
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:26186851 original size:83 final size:83
Alignment explanation
Indices: 26186757--26187204 Score: 794
Period size: 83 Copynumber: 5.4 Consensus size: 83
26186747 AGATATAGCA
* *
26186757 ACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
26186822 AGCCCGGGTATAGCAACT
66 AGCCCGGGTATAGCAACT
26186840 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
26186905 AGCCCGGGTATAGCAACT
66 AGCCCGGGTATAGCAACT
26186923 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
26186988 AGCCCGGGTATAGCAACT
66 AGCCCGGGTATAGCAACT
26187006 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
* *
26187071 AGCCCGGATATAGGAACT
66 AGCCCGGGTATAGCAACT
* *
26187089 ACTCGCACAAATGCCTTTGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCAGGACTT
1 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
* *
26187154 AGCCCGGATATAGGAACT
66 AGCCCGGGTATAGCAACT
*
26187172 --T-GCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATAT
26187205 CATCCGAATA
Statistics
Matches: 357, Mismatches: 8, Indels: 3
0.97 0.02 0.01
Matches are distributed among these distances:
80 30 0.08
81 1 0.00
83 326 0.91
ACGTcount: A:0.26, C:0.29, G:0.23, T:0.22
Consensus pattern (83 bp):
ACTCGCACAAATGCCTTCGGGACTTCGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTT
AGCCCGGGTATAGCAACT
Found at i:26194495 original size:40 final size:40
Alignment explanation
Indices: 26194417--26194640 Score: 310
Period size: 40 Copynumber: 5.5 Consensus size: 40
26194407 ACCCAAGTAT
* *
26194417 CTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATGC
* **
26194456 CTTCGGGTCTTAGCCCGGATATAGTCACTAGCATGAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
26194496 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
*
26194536 CTTCGGGACTTAGCCCGGGTATAG-CAACTACTCGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTC-ACTA---GCACAAATGC
* *
26194579 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGC
1 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
26194619 CTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATAT
26194641 CATCCGAATA
Statistics
Matches: 166, Mismatches: 12, Indels: 13
0.87 0.06 0.07
Matches are distributed among these distances:
39 12 0.07
40 117 0.70
41 1 0.01
43 36 0.22
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (40 bp):
CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGC
Found at i:26194613 original size:83 final size:80
Alignment explanation
Indices: 26194417--26194640 Score: 317
Period size: 83 Copynumber: 2.8 Consensus size: 80
26194407 ACCCAAGTAT
* * * *
26194417 CTTCGGGATTTAG-CCGGATATAGCAACTCGCACAAATGCCTTCGGGTCTTAGCCCGGATATAGT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
**
26194481 CACTAGCATGAATGC
66 CACTAGCACAAATGC
* *
26194496 CTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATGCCTTCGGGACTTAGCCCGGGTATAG-
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
26194560 CAACTACTCGCACAAATGC
66 C-ACTA---GCACAAATGC
*
26194579 CTTCGGGACTTAGCCCGGATATAGTAACTTGCACAAATGCCTTCGGGACTTAGCCCGGATAT
1 CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATAT
26194641 CATCCGAATA
Statistics
Matches: 129, Mismatches: 11, Indels: 6
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.10
80 49 0.38
83 67 0.52
ACGTcount: A:0.25, C:0.27, G:0.24, T:0.24
Consensus pattern (80 bp):
CTTCGGGACTTAGCCCGGATATAGTAACTAGCACAAATGCCTTCGGGACTTAGCCCGGATATAGT
CACTAGCACAAATGC
Found at i:26198413 original size:23 final size:23
Alignment explanation
Indices: 26198344--26198420 Score: 100
Period size: 23 Copynumber: 3.3 Consensus size: 23
26198334 GTTTTTATGT
* *
26198344 TGTATTCTGTAATGCCTTTGTGG
1 TGTATTCTGCAATGCTTTTGTGG
** * *
26198367 CATATTTTGCAATGCTTTTATGG
1 TGTATTCTGCAATGCTTTTGTGG
26198390 TGTATTCTGCAATGCTTTTGTGG
1 TGTATTCTGCAATGCTTTTGTGG
26198413 TGTATTCT
1 TGTATTCT
26198421 TGTAACATCC
Statistics
Matches: 44, Mismatches: 10, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.16, C:0.13, G:0.22, T:0.49
Consensus pattern (23 bp):
TGTATTCTGCAATGCTTTTGTGG
Found at i:26203917 original size:33 final size:34
Alignment explanation
Indices: 26203840--26203918 Score: 97
Period size: 34 Copynumber: 2.4 Consensus size: 34
26203830 GTATCAGTTA
* * * *
26203840 GGCCTTAGCCTATTTCAGTAACAGTAGCAGTCTG
1 GGCCTAAGCCCATTTCAGTAACAATAGCAGTCGG
* *
26203874 GGCCTGAGCCCATTTCAGTATCAATAGCAGT-GG
1 GGCCTAAGCCCATTTCAGTAACAATAGCAGTCGG
26203907 GGCCTAAGCCCA
1 GGCCTAAGCCCA
26203919 ATAACATATC
Statistics
Matches: 39, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
33 12 0.31
34 27 0.69
ACGTcount: A:0.24, C:0.27, G:0.25, T:0.24
Consensus pattern (34 bp):
GGCCTAAGCCCATTTCAGTAACAATAGCAGTCGG
Found at i:26205556 original size:27 final size:27
Alignment explanation
Indices: 26205525--26205702 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26205515 TAAATTGTAC
26205525 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26205552 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26205578 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26205606 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26205634 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26205661 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26205688 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26205703 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26205639 original size:82 final size:81
Alignment explanation
Indices: 26205526--26205681 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26205516 AAATTGTACA
* *
26205526 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26205590 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26205607 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26205672 TGCGAGTTGA
65 TGCGAATTGA
26205682 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26205693 original size:82 final size:81
Alignment explanation
Indices: 26205522--26205702 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26205512 GATTAAATTG
* *
26205522 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26205587 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26205603 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26205667 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26205685 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26205703 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26216390 original size:30 final size:29
Alignment explanation
Indices: 26216354--26216420 Score: 91
Period size: 30 Copynumber: 2.3 Consensus size: 29
26216344 TCGTATCTTG
*
26216354 GGTTTCTTTA-CTATGGGTTTCTTTATTCTA
1 GGTTTCTTTATCT-TGGATTTCTTTATTC-A
26216384 GGTTTCTTTATCTTGGATTTCTTTATTCA
1 GGTTTCTTTATCTTGGATTTCTTTATTCA
*
26216413 GTTTTCTT
1 GGTTTCTT
26216421 GTTATCTTTA
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
29 8 0.24
30 24 0.71
31 2 0.06
ACGTcount: A:0.12, C:0.13, G:0.15, T:0.60
Consensus pattern (29 bp):
GGTTTCTTTATCTTGGATTTCTTTATTCA
Found at i:26216409 original size:15 final size:15
Alignment explanation
Indices: 26216347--26216409 Score: 76
Period size: 15 Copynumber: 4.2 Consensus size: 15
26216337 CATAGTATCG
26216347 TATCTTGGGTTTCTT
1 TATCTTGGGTTTCTT
26216362 TA-CTATGGGTTTCTT
1 TATCT-TGGGTTTCTT
*
26216377 TAT-TCTAGGTTTCTT
1 TATCT-TGGGTTTCTT
*
26216392 TATCTTGGATTTCTT
1 TATCTTGGGTTTCTT
26216407 TAT
1 TAT
26216410 TCAGTTTTCT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
14 2 0.05
15 38 0.93
16 1 0.02
ACGTcount: A:0.13, C:0.13, G:0.16, T:0.59
Consensus pattern (15 bp):
TATCTTGGGTTTCTT
Found at i:26217926 original size:79 final size:79
Alignment explanation
Indices: 26217795--26217949 Score: 283
Period size: 79 Copynumber: 2.0 Consensus size: 79
26217785 AGGGAAAATG
*
26217795 ATAAGAAAATAGGATGAAGTTTAATTTCTGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
1 ATAAGAAAATAGGATGAAGTTTAATTTCCGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
26217860 AGGGGTCAAAAAAC
66 AGGGGTCAAAAAAC
* *
26217874 ATAAGAAAATCGGATGAAGTTTAATTTCCGAACCTTGGGGCAAAAGTGCAAATATGCAAAAGTTT
1 ATAAGAAAATAGGATGAAGTTTAATTTCCGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
26217939 AGGGGTCAAAA
66 AGGGGTCAAAA
26217950 TGAAAATTTT
Statistics
Matches: 73, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
79 73 1.00
ACGTcount: A:0.43, C:0.11, G:0.23, T:0.23
Consensus pattern (79 bp):
ATAAGAAAATAGGATGAAGTTTAATTTCCGAACCTAGGGGCAAAAGTGCAAATATGCAAAAGTTT
AGGGGTCAAAAAAC
Found at i:26218791 original size:49 final size:49
Alignment explanation
Indices: 26218619--26218852 Score: 279
Period size: 49 Copynumber: 4.7 Consensus size: 49
26218609 TGAGGTCGCA
* * * * * * *
26218619 TGTGTAGTACTAAGTGCAGGCCACTATGCGTACCTGAAAACTGTGATCACT
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAA-T-TGGTCACG
* ** *
26218670 TGTGTAGTACTAAGTGCAGGCTACTACGTGTATCAGATGGTTAGGTCGCG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATT-GGTCACG
* *
26218720 TGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATAATTGGTCATG
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* *
26218769 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCGGATAATTGGTCACA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
* * *
26218818 TGTGTAGTACTATGTGCAGGCTACTATGCGTACCA
1 TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCA
26218853 ATAGCTTTGG
Statistics
Matches: 157, Mismatches: 25, Indels: 4
0.84 0.13 0.02
Matches are distributed among these distances:
49 82 0.52
50 43 0.27
51 32 0.20
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (49 bp):
TGTGTAGTACTAAGTGCAGGCTACTACGTGTACCAGATAATTGGTCACG
Found at i:26218873 original size:99 final size:98
Alignment explanation
Indices: 26218611--26218873 Score: 280
Period size: 99 Copynumber: 2.6 Consensus size: 98
26218601 ATCTATTGTG
* * * * *
26218611 AGGTCGCATGTGTAGTACTAAGTGCAGGCCACTATGCGTACCTGAAAACTGTGATCACTTGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACC--AATACTTTGGT-ACATGTGTA
* **
26218676 GTACTAAGTGCAGGCTACTACGTGTATCAGATGGTT
63 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * * * *
26218712 AGGTCGCGTGTGTAGTACTAAGTGCAGGCTATTACGTGTACCAGATA-ATTGGT-CATGTGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCA-ATACTTTGGTACA--TGTGTA
*
26218775 GTACTAAGTGCAGGCTACTACGTGTACCGGATAATT
63 GTACTAAGTGCAGGCTACTACGTGTACCAGATAATT
* * *
26218811 -GGTCACATGTGTAGTACTATGTGCAGGCTACTATGCGTACCAATAGCTTTGGCTACAAGTGTA
1 AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAATA-CTTTGG-TACATGTGTA
26218874 AAAATATGTG
Statistics
Matches: 133, Mismatches: 22, Indels: 16
0.78 0.13 0.09
Matches are distributed among these distances:
97 4 0.03
98 36 0.27
99 51 0.38
100 3 0.02
101 39 0.29
ACGTcount: A:0.25, C:0.18, G:0.27, T:0.30
Consensus pattern (98 bp):
AGGTCGCATGTGTAGTACTAAGTGCAGGCTACTATGCGTACCAATACTTTGGTACATGTGTAGTA
CTAAGTGCAGGCTACTACGTGTACCAGATAATT
Found at i:26222418 original size:18 final size:18
Alignment explanation
Indices: 26222376--26222418 Score: 61
Period size: 18 Copynumber: 2.4 Consensus size: 18
26222366 GCCCATTCCG
*
26222376 AAGTATATATATATACAT
1 AAGTATGTATATATACAT
26222394 ATA-TATGTATATATACAT
1 A-AGTATGTATATATACAT
26222412 AAGTATG
1 AAGTATG
26222419 CCCATTCGTG
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 1 0.05
18 20 0.91
19 1 0.05
ACGTcount: A:0.47, C:0.05, G:0.09, T:0.40
Consensus pattern (18 bp):
AAGTATGTATATATACAT
Found at i:26222940 original size:27 final size:28
Alignment explanation
Indices: 26222856--26222953 Score: 128
Period size: 27 Copynumber: 3.5 Consensus size: 28
26222846 CATGAGATTG
* * *
26222856 GCACTAAGTGTGCGGGTTTAAATTGT-TCA
1 GCACTAAGTGTGCGAGTTT-GATTATAT-A
26222885 GCACTAAGTGTGCGAGTTTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
26222913 GCACTAAGTGTGCGAG-TTGATTATATA
1 GCACTAAGTGTGCGAGTTTGATTATATA
*
26222940 GCACTGAGTGTGCG
1 GCACTAAGTGTGCG
26222954 GACTTAATAT
Statistics
Matches: 64, Mismatches: 4, Indels: 4
0.89 0.06 0.06
Matches are distributed among these distances:
27 24 0.38
28 21 0.33
29 19 0.30
ACGTcount: A:0.26, C:0.13, G:0.29, T:0.33
Consensus pattern (28 bp):
GCACTAAGTGTGCGAGTTTGATTATATA
Found at i:26222967 original size:29 final size:27
Alignment explanation
Indices: 26222884--26222967 Score: 96
Period size: 27 Copynumber: 3.0 Consensus size: 27
26222874 TAAATTGTTC
* *
26222884 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGCGA-CTTAATTATAT
* *
26222912 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGACTTAATTATAT
*
26222939 AGCACTGAGTGTGCGGACTTAATATATAT
1 AGCACTAAGTGTGC-GACTTAAT-TATAT
26222968 TTTTGAATCA
Statistics
Matches: 50, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
27 23 0.46
28 22 0.44
29 5 0.10
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCGACTTAATTATAT
Found at i:26224860 original size:17 final size:17
Alignment explanation
Indices: 26224838--26224876 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
26224828 TCTCTGACAC
26224838 AGTGCATGGTATGTAAA
1 AGTGCATGGTATGTAAA
*
26224855 AGTGCATGGTATGTAAG
1 AGTGCATGGTATGTAAA
26224872 AGTGC
1 AGTGC
26224877 GTAGATACAA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.31, C:0.08, G:0.33, T:0.28
Consensus pattern (17 bp):
AGTGCATGGTATGTAAA
Found at i:26230257 original size:40 final size:40
Alignment explanation
Indices: 26230202--26230385 Score: 253
Period size: 40 Copynumber: 4.5 Consensus size: 40
26230192 TATTCGGATG
26230202 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
26230242 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGC-A--AGTTACT
* * * *
26230285 ATACCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
26230325 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
26230365 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
26230386 ATACTTGGGT
Statistics
Matches: 127, Mismatches: 14, Indels: 7
0.86 0.09 0.05
Matches are distributed among these distances:
39 13 0.10
40 77 0.61
41 1 0.01
43 36 0.28
ACGTcount: A:0.24, C:0.23, G:0.27, T:0.26
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:26230345 original size:83 final size:83
Alignment explanation
Indices: 26230206--26230360 Score: 274
Period size: 83 Copynumber: 1.9 Consensus size: 83
26230196 CGGATGATAT
* * *
26230206 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
26230271 TGCGAGTAGTTGCTATAC
66 TGCGAGTAGTTGCTATAC
*
26230289 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
26230354 TGCGAGT
66 TGCGAGT
26230361 TGCTATATCC
Statistics
Matches: 68, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
83 68 1.00
ACGTcount: A:0.23, C:0.23, G:0.28, T:0.25
Consensus pattern (83 bp):
CCGGGCTAAGTCCCAAAGGCATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCGAGTAGTTGCTATAC
Found at i:26230405 original size:83 final size:82
Alignment explanation
Indices: 26230206--26230386 Score: 242
Period size: 83 Copynumber: 2.2 Consensus size: 82
26230196 CGGATGATAT
* * * * *
26230206 CCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACTATATCCGGGCTAAGTCCCGAAGGCATTTG
1 CCGGGCTAAATCCCAAAGACATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
26230271 TGCGAGTAGTTGCTATAC
66 TGC-AGTAGTTGCTATAC
* * *
26230289 CCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
1 CCGGGCTAAATCCCAAAGACATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
*
26230354 TGC-G-AGTTGCTATAT
66 TGCAGTAGTTGCTATAC
*
26230369 CC-GGCTAAATCCCGAAGA
1 CCGGGCTAAATCCCAAAGA
26230387 TACTTGGGTT
Statistics
Matches: 90, Mismatches: 8, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
79 13 0.14
80 12 0.13
81 1 0.01
83 64 0.71
ACGTcount: A:0.24, C:0.24, G:0.27, T:0.25
Consensus pattern (82 bp):
CCGGGCTAAATCCCAAAGACATTTGTGCAAGTGACTATATCCGGGCTAAGACCCGAAGGCATTTG
TGCAGTAGTTGCTATAC
Found at i:26234602 original size:15 final size:15
Alignment explanation
Indices: 26234579--26234610 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
26234569 AAAGTTAATC
*
26234579 AAAATTTATTTCATA
1 AAAAATTATTTCATA
26234594 AAAAATTATTTCATA
1 AAAAATTATTTCATA
26234609 AA
1 AA
26234611 CTAATACAAC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.41
Consensus pattern (15 bp):
AAAAATTATTTCATA
Found at i:26240989 original size:44 final size:42
Alignment explanation
Indices: 26240925--26241019 Score: 113
Period size: 44 Copynumber: 2.2 Consensus size: 42
26240915 TAAGATATCA
* * *
26240925 TGTAAGACCGTGTCTGGGACA-TAGGCATCG-ATTTGAGATTTACG
1 TGTAAGACCATGTATAGGACACTA-GCATCGTATTT--GATTT-CG
26240969 TGTAAGACCATGTATAGGACACTAGCATCGTATTTGATTTCG
1 TGTAAGACCATGTATAGGACACTAGCATCGTATTTGATTTCG
26241011 TGTAAGACC
1 TGTAAGACC
26241020 CTATCTGGGA
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
42 11 0.24
43 5 0.11
44 24 0.52
45 6 0.13
ACGTcount: A:0.27, C:0.17, G:0.25, T:0.31
Consensus pattern (42 bp):
TGTAAGACCATGTATAGGACACTAGCATCGTATTTGATTTCG
Found at i:26242171 original size:30 final size:30
Alignment explanation
Indices: 26242115--26242173 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
26242105 CTCGAGCCTG
* *
26242115 GGGGCAAAAGTGTAATTATGTAAAAGTTTA
1 GGGGCAAAAATGTAATTATGCAAAAGTTTA
* *
26242145 GGGGCAAAAATGTAATTTTGCCAAAGTTT
1 GGGGCAAAAATGTAATTATGCAAAAGTTT
26242174 GTATTAAATG
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.37, C:0.07, G:0.25, T:0.31
Consensus pattern (30 bp):
GGGGCAAAAATGTAATTATGCAAAAGTTTA
Found at i:26242645 original size:46 final size:48
Alignment explanation
Indices: 26242594--26242724 Score: 164
Period size: 46 Copynumber: 2.8 Consensus size: 48
26242584 ATGGTTGAGC
*
26242594 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA-ATG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
* * * *
26242641 -TCCGAACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGG
1 ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAC-AGG
26242686 CATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 -ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26242725 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
43 5 0.07
45 4 0.06
46 29 0.42
47 29 0.42
48 2 0.03
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (48 bp):
ATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAACAGG
Found at i:26260391 original size:27 final size:26
Alignment explanation
Indices: 26260360--26260822 Score: 285
Period size: 27 Copynumber: 17.6 Consensus size: 26
26260350 TAAATTGTAC
26260360 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
26260387 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
26260413 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
* **
26260441 GGCACTAAGTGTGCGAGGTTGACTATAC
1 AGCACTAAGTGTGCGA--TTGACTATGT
26260469 AGCACTAAGTGTGCGATTCGACTATGT
1 AGCACTAAGTGTGCGATT-GACTATGT
* * *
26260496 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCG-ATTGACTATGT
* *
26260522 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCG-ATTGACTATGT
*
26260550 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
26260578 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
26260605 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* * *
26260632 AGCACTGAGTGTGCG---GGCTCAATAT
1 AGCACTAAGTGTGCGATTGACT--ATGT
* * * *
26260657 A-CA-T---TCGT--GAATCATTATGG
1 AGCACTAAGT-GTGCGATTGACTATGT
* *
26260677 A-CACTATGTGTGCGA--CACTAT-T
1 AGCACTAAGTGTGCGATTGACTATGT
* *
26260699 GAG-ACTAAGTGTGCGAATTGACCATGC
1 -AGCACTAAGTGTGCG-ATTGACTATGT
*
26260726 GGCACTAAGTGTGCGAGGTTGACTATGT
1 AGCACTAAGTGTGCGA--TTGACTATGT
* *
26260754 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGA-TTGACTATGT
* *
26260781 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGA-TTGACTATGT
*
26260808 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26260823 GGCTCAATAT
Statistics
Matches: 349, Mismatches: 55, Indels: 64
0.75 0.12 0.14
Matches are distributed among these distances:
19 1 0.00
20 6 0.02
21 3 0.01
22 1 0.00
23 22 0.06
24 4 0.01
25 7 0.02
26 10 0.03
27 222 0.64
28 73 0.21
ACGTcount: A:0.27, C:0.16, G:0.28, T:0.29
Consensus pattern (26 bp):
AGCACTAAGTGTGCGATTGACTATGT
Found at i:26260478 original size:82 final size:80
Alignment explanation
Indices: 26260360--26260646 Score: 290
Period size: 82 Copynumber: 3.5 Consensus size: 80
26260350 TAAATTGTAC
*** * *
26260360 AGCACTAAGTGTGCGA-TTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAAGT
1 AGCACTAAGTGTGCGAGTT-GACTATACAGCACTAAGTGTGCGAATTGACTATG-TGCACTAAGT
** *
26260424 GTGCGAATTGACCATGC
64 GTGCGAATTGAATATGA
*
26260441 GGCACTAAGTGTGCGAGGTTGACTATACAGCACTAAGTGTGCG-ATTCGACTATGTTGCACTAAG
1 AGCACTAAGTGTGCGA-GTTGACTATACAGCACTAAGTGTGCGAATT-GACTATG-TGCACTAAG
*
26260505 TGTGCGAAATGAATATGA
63 TGTGCGAATTGAATATGA
* * * * * *
26260523 TGCACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGT
1 AGCACTAAGTGTGCGAGTTGACTATACAGCACTAAGTGTGCGA-ATTGACTATGT-GCACTAAGT
* * * *
26260588 GTGCGATTTGATTACGT
64 GTGCGAATTGAATATGA
* * *
26260605 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATACAGCACTAAGTGTGCG
26260647 GGCTCAATAT
Statistics
Matches: 170, Mismatches: 30, Indels: 11
0.81 0.14 0.05
Matches are distributed among these distances:
81 40 0.24
82 126 0.74
83 4 0.02
ACGTcount: A:0.28, C:0.16, G:0.28, T:0.28
Consensus pattern (80 bp):
AGCACTAAGTGTGCGAGTTGACTATACAGCACTAAGTGTGCGAATTGACTATGTGCACTAAGTGT
GCGAATTGAATATGA
Found at i:26260548 original size:109 final size:109
Alignment explanation
Indices: 26260357--26260646 Score: 474
Period size: 109 Copynumber: 2.7 Consensus size: 109
26260347 GATTAAATTG
26260357 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
26260422 GTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTA
66 GTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTA
26260466 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
26260531 GTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTA
66 GTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTA
** * * * * ** * *
26260575 TGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTAT-ATAGCACTG
1 TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGAT-GCACTA
26260639 AGTGTGCG
65 AGTGTGCG
26260647 GGCTCAATAT
Statistics
Matches: 170, Mismatches: 10, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
108 2 0.01
109 168 0.99
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (109 bp):
TACAGCACTAAGTGTGCGATTCGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTA
Found at i:26260769 original size:55 final size:54
Alignment explanation
Indices: 26260702--26260822 Score: 152
Period size: 55 Copynumber: 2.2 Consensus size: 54
26260692 CACTATTGAG
* * *
26260702 ACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATGTAGC
1 ACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGA-GTTGACTATATAGC
* ** * *
26260757 ACTAAGTGTGCGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGC
1 ACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATAGC
*
26260811 ACTGAGTGTGCG
1 ACTAAGTGTGCG
26260823 GGCTCAATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 1
0.85 0.13 0.01
Matches are distributed among these distances:
54 23 0.40
55 34 0.60
ACGTcount: A:0.26, C:0.16, G:0.30, T:0.29
Consensus pattern (54 bp):
ACTAAGTGTGCGAATTGACCACGCAGCACTAAGTGTGCGAGTTGACTATATAGC
Found at i:26260820 original size:176 final size:176
Alignment explanation
Indices: 26260526--26260877 Score: 704
Period size: 176 Copynumber: 2.0 Consensus size: 176
26260516 AATATGATGC
26260526 ACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTG
1 ACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTG
26260591 CGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGGCTCAATA
66 CGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGGCTCAATA
26260656 TACATTCGTGAATCATTATGGACACTATGTGTGCGACACTATTGAG
131 TACATTCGTGAATCATTATGGACACTATGTGTGCGACACTATTGAG
26260702 ACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTG
1 ACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTG
26260767 CGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGGCTCAATA
66 CGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGGCTCAATA
26260832 TACATTCGTGAATCATTATGGACACTATGTGTGCGACACTATTGAG
131 TACATTCGTGAATCATTATGGACACTATGTGTGCGACACTATTGAG
26260878 TCGATCGCGG
Statistics
Matches: 176, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
176 176 1.00
ACGTcount: A:0.27, C:0.16, G:0.27, T:0.30
Consensus pattern (176 bp):
ACTAAGTGTGCGAATTGACCATGCGGCACTAAGTGTGCGAGGTTGACTATGTAGCACTAAGTGTG
CGATTTGATTACGTAGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCGGGCTCAATA
TACATTCGTGAATCATTATGGACACTATGTGTGCGACACTATTGAG
Found at i:26260833 original size:27 final size:27
Alignment explanation
Indices: 26260727--26260833 Score: 70
Period size: 27 Copynumber: 3.9 Consensus size: 27
26260717 TGACCATGCG
* * * *
26260727 GCACTAAGTGTGCGAGGTTGACTATGTA
1 GCACTAAGTGTGCGA-GCTCAATATATA
** * * **
26260755 GCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGAGCTCAATATATA
* * *
26260782 GCACTAAGTGTGCGAGTTGATTATATA
1 GCACTAAGTGTGCGAGCTCAATATATA
* *
26260809 GCACTGAGTGTGCGGGCTCAATATA
1 GCACTAAGTGTGCGAGCTCAATATA
26260834 CATTCGTGAA
Statistics
Matches: 68, Mismatches: 11, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
27 53 0.78
28 15 0.22
ACGTcount: A:0.26, C:0.15, G:0.29, T:0.30
Consensus pattern (27 bp):
GCACTAAGTGTGCGAGCTCAATATATA
Found at i:26261109 original size:130 final size:130
Alignment explanation
Indices: 26260876--26261135 Score: 511
Period size: 130 Copynumber: 2.0 Consensus size: 130
26260866 GACACTATTG
*
26260876 AGTCGATCGCGGACAGCGGATCGGGTAAGTGTCTTGAGTACATGGCTAATATGTGCTATGCTTAT
1 AGTCGATCGCGGACAGCGGATCGGGTAAGTGTCTTGAGTACATGGCTAATAGGTGCTATGCTTAT
26260941 ACTTGGTGTTGAGCTCGGTAAGTTGAACCTATGTGACAAATATACTTGAAGTCACGTACATAAAA
66 ACTTGGTGTTGAGCTCGGTAAGTTGAACCTATGTGACAAATATACTTGAAGTCACGTACATAAAA
26261006 AGTCGATCGCGGACAGCGGATCGGGTAAGTGTCTTGAGTACATGGCTAATAGGTGCTATGCTTAT
1 AGTCGATCGCGGACAGCGGATCGGGTAAGTGTCTTGAGTACATGGCTAATAGGTGCTATGCTTAT
26261071 ACTTGGTGTTGAGCTCGGTAAGTTGAACCTATGTGACAAATATACTTGAAGTCACGTACATAAAA
66 ACTTGGTGTTGAGCTCGGTAAGTTGAACCTATGTGACAAATATACTTGAAGTCACGTACATAAAA
26261136 TTTATCATAG
Statistics
Matches: 129, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
130 129 1.00
ACGTcount: A:0.28, C:0.16, G:0.27, T:0.29
Consensus pattern (130 bp):
AGTCGATCGCGGACAGCGGATCGGGTAAGTGTCTTGAGTACATGGCTAATAGGTGCTATGCTTAT
ACTTGGTGTTGAGCTCGGTAAGTTGAACCTATGTGACAAATATACTTGAAGTCACGTACATAAAA
Found at i:26264119 original size:30 final size:30
Alignment explanation
Indices: 26264083--26264143 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
26264073 TTCCCGAGCC
*
26264083 TAGGGGCAAAAGTGTAATTATGCAAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
* *
26264113 TAGGGGCAAAAATGTAATTTTGCCAAAGTT
1 TAGGGGCAAAAATGTAATTATGCAAAAGTT
26264143 T
1 T
26264144 GTATTAAATG
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.38, C:0.08, G:0.25, T:0.30
Consensus pattern (30 bp):
TAGGGGCAAAAATGTAATTATGCAAAAGTT
Found at i:26264622 original size:46 final size:45
Alignment explanation
Indices: 26264569--26264740 Score: 179
Period size: 46 Copynumber: 3.7 Consensus size: 45
26264559 TGAGCATCCA
26264569 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAA-GTCCG
* * * *
26264615 AACTCGTTGAGTTGAGTCCGAGTTC-GTGA--AATGTAACTAGGCATCCG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAA--A-G--TCCG
* * **
26264662 AACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAACACCTG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGTCC-G
*
26264708 AGCTCGTTGAGTTGAGTCCGAGTTCACTTATGG
1 AACTCGTTGAGTTGAGTCCGAGTTCACTTATGG
26264741 GCGGGTTACA
Statistics
Matches: 104, Mismatches: 14, Indels: 16
0.78 0.10 0.12
Matches are distributed among these distances:
43 5 0.05
45 6 0.06
46 57 0.55
47 29 0.28
48 3 0.03
50 4 0.04
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.30
Consensus pattern (45 bp):
AACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAAGTCCG
Found at i:26264721 original size:93 final size:93
Alignment explanation
Indices: 26264562--26264732 Score: 272
Period size: 93 Copynumber: 1.8 Consensus size: 93
26264552 GGATGGTTGA
* **
26264562 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCAAATGTCCGAACTCGTTGAGT
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATCACCGAACTCGTTGAGT
26264627 TGAGTCCGAGTTCGTGAAATGTAACTAG
66 TGAGTCCGAGTTCGTGAAATGTAACTAG
* * *
26264655 GCATCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCGAA-CACCTGAGCTCGTTGAG
1 GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATCACC-GAACTCGTTGAG
26264719 TTGAGTCCGAGTTC
65 TTGAGTCCGAGTTC
26264733 ACTTATGGGC
Statistics
Matches: 71, Mismatches: 6, Indels: 2
0.90 0.08 0.03
Matches are distributed among these distances:
92 2 0.03
93 69 0.97
ACGTcount: A:0.24, C:0.21, G:0.26, T:0.29
Consensus pattern (93 bp):
GCATCCAAACTCGTTGAGTTGAGTCCGAGTTCACTTATAGATGCAAATCACCGAACTCGTTGAGT
TGAGTCCGAGTTCGTGAAATGTAACTAG
Found at i:26271072 original size:22 final size:23
Alignment explanation
Indices: 26271028--26271070 Score: 63
Period size: 21 Copynumber: 2.0 Consensus size: 23
26271018 TTATTACTAT
26271028 TTTTTCTCTATGTTTCCCTTTTC
1 TTTTTCTCTATGTTTCCCTTTTC
*
26271051 TTTTTC-CT-TGTTTACCTTTT
1 TTTTTCTCTATGTTTCCCTTTT
26271071 TCAGTCACTG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
21 11 0.58
22 2 0.11
23 6 0.32
ACGTcount: A:0.05, C:0.23, G:0.05, T:0.67
Consensus pattern (23 bp):
TTTTTCTCTATGTTTCCCTTTTC
Found at i:26273376 original size:56 final size:56
Alignment explanation
Indices: 26273316--26273434 Score: 195
Period size: 56 Copynumber: 2.1 Consensus size: 56
26273306 TCCCAGACAG
*
26273316 GGTCTTACTCGCACACATATATC-AGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCACACATATATCGA-AGTCACATATCGATGCCAACGTATAAAACAT
* *
26273372 GGTCTTACTCGCACGCATATATCGAAGTCACATATTGATGCCAACGTATAAAACAT
1 GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
26273428 GGTCTTA
1 GGTCTTA
26273435 TTCGTAAAAA
Statistics
Matches: 59, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
56 58 0.98
57 1 0.02
ACGTcount: A:0.33, C:0.24, G:0.17, T:0.27
Consensus pattern (56 bp):
GGTCTTACTCGCACACATATATCGAAGTCACATATCGATGCCAACGTATAAAACAT
Found at i:26273448 original size:56 final size:56
Alignment explanation
Indices: 26273316--26273449 Score: 171
Period size: 56 Copynumber: 2.4 Consensus size: 56
26273306 TCCCAGACAG
* * *
26273316 GGTCTTACTCGCACACATATATCAGAGTCACATATCGATGCCAACGTATAAAACGT
1 GGTCTTACTCGCAAAAATATATCAGAGTCACATATCGATGCCAACGTATAAAACAT
*** *
26273372 GGTCTTACTCGCACGCATATATC-GAAGTCACATATTGATGCCAACGTATAAAACAT
1 GGTCTTACTCGCAAAAATATATCAG-AGTCACATATCGATGCCAACGTATAAAACAT
* *
26273428 GGTCTTATTCGTAAAAATATAT
1 GGTCTTACTCGCAAAAATATAT
26273450 GATGCCATGG
Statistics
Matches: 69, Mismatches: 8, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 1 0.01
56 68 0.99
ACGTcount: A:0.34, C:0.22, G:0.16, T:0.28
Consensus pattern (56 bp):
GGTCTTACTCGCAAAAATATATCAGAGTCACATATCGATGCCAACGTATAAAACAT
Found at i:26274374 original size:11 final size:10
Alignment explanation
Indices: 26274358--26274408 Score: 54
Period size: 10 Copynumber: 5.3 Consensus size: 10
26274348 TTATATGTTT
26274358 TATTATATACA
1 TATTAT-TACA
26274369 TATTATTACA
1 TATTATTACA
*
26274379 TAAT-TTACA
1 TATTATTACA
*
26274388 TATTATTACC
1 TATTATTACA
26274398 T-TT-TTACA
1 TATTATTACA
26274406 TAT
1 TAT
26274409 AATAATAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
8 5 0.15
9 11 0.32
10 12 0.35
11 6 0.18
ACGTcount: A:0.37, C:0.12, G:0.00, T:0.51
Consensus pattern (10 bp):
TATTATTACA
Found at i:26278400 original size:17 final size:19
Alignment explanation
Indices: 26278378--26278426 Score: 57
Period size: 21 Copynumber: 2.5 Consensus size: 19
26278368 ATGAGTATGT
26278378 ATGATATT-T-AATGTTTG
1 ATGATATTATGAATGTTTG
26278395 ATGATAGATTATGAATGTTTG
1 ATGAT--ATTATGAATGTTTG
26278416 ATGATAGTTAT
1 ATGATA-TTAT
26278427 ACAAGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
17 5 0.19
19 4 0.15
20 5 0.19
21 13 0.48
ACGTcount: A:0.33, C:0.00, G:0.20, T:0.47
Consensus pattern (19 bp):
ATGATATTATGAATGTTTG
Found at i:26278413 original size:21 final size:20
Alignment explanation
Indices: 26278387--26278426 Score: 71
Period size: 21 Copynumber: 1.9 Consensus size: 20
26278377 TATGATATTT
26278387 AATGTTTGATGATAGATTATG
1 AATGTTTGATGATAG-TTATG
26278408 AATGTTTGATGATAGTTAT
1 AATGTTTGATGATAGTTAT
26278427 ACAAGTTTTG
Statistics
Matches: 19, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 4 0.21
21 15 0.79
ACGTcount: A:0.33, C:0.00, G:0.23, T:0.45
Consensus pattern (20 bp):
AATGTTTGATGATAGTTATG
Found at i:26278436 original size:21 final size:21
Alignment explanation
Indices: 26278387--26278434 Score: 64
Period size: 21 Copynumber: 2.3 Consensus size: 21
26278377 TATGATATTT
*
26278387 AATGTTTGATGATAGATTATG
1 AATGTTTGATGATAGATTATC
26278408 AATGTTTGATGATAG-TTATAC
1 AATGTTTGATGATAGATTAT-C
26278429 AA-GTTT
1 AATGTTT
26278435 TGTTAAGTGA
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
20 8 0.32
21 17 0.68
ACGTcount: A:0.33, C:0.02, G:0.21, T:0.44
Consensus pattern (21 bp):
AATGTTTGATGATAGATTATC
Found at i:26282389 original size:57 final size:57
Alignment explanation
Indices: 26282301--26282415 Score: 230
Period size: 57 Copynumber: 2.0 Consensus size: 57
26282291 GTTACTGCTT
26282301 TCCTGCTGATTTCATGCTACTACCTTTTGATGAATTCAATGTAATTCTGGGTATGGA
1 TCCTGCTGATTTCATGCTACTACCTTTTGATGAATTCAATGTAATTCTGGGTATGGA
26282358 TCCTGCTGATTTCATGCTACTACCTTTTGATGAATTCAATGTAATTCTGGGTATGGA
1 TCCTGCTGATTTCATGCTACTACCTTTTGATGAATTCAATGTAATTCTGGGTATGGA
26282415 T
1 T
26282416 TGGTTGACGC
Statistics
Matches: 58, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
57 58 1.00
ACGTcount: A:0.23, C:0.17, G:0.19, T:0.41
Consensus pattern (57 bp):
TCCTGCTGATTTCATGCTACTACCTTTTGATGAATTCAATGTAATTCTGGGTATGGA
Found at i:26285643 original size:32 final size:32
Alignment explanation
Indices: 26285593--26285657 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
26285583 TTATGATTAT
*
26285593 TTTAATTTCTACAACATGATAATATGTTTGTG
1 TTTAATTTCCACAACATGATAATATGTTTGTG
* *
26285625 TTTAATTTCCATAGCATGATAATATGTTTGTG
1 TTTAATTTCCACAACATGATAATATGTTTGTG
26285657 T
1 T
26285658 GAAATTTTCA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.29, C:0.09, G:0.14, T:0.48
Consensus pattern (32 bp):
TTTAATTTCCACAACATGATAATATGTTTGTG
Found at i:26301536 original size:22 final size:21
Alignment explanation
Indices: 26301511--26301556 Score: 56
Period size: 22 Copynumber: 2.1 Consensus size: 21
26301501 CAAATATTTC
* *
26301511 ATAATTTACTATAATAACCTTT
1 ATAAATTAATATAA-AACCTTT
*
26301533 ATAAATTAATATAAAATCTTT
1 ATAAATTAATATAAAACCTTT
26301554 ATA
1 ATA
26301557 TTGGCTATCC
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (21 bp):
ATAAATTAATATAAAACCTTT
Found at i:26305840 original size:19 final size:20
Alignment explanation
Indices: 26305797--26305840 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26305787 TATAAAGTAA
* *
26305797 GTTTGAGATAGGTATTATGT
1 GTTTGAGAAAGGTATAATGT
*
26305817 TTTTGAGAAAGGT-TAATGT
1 GTTTGAGAAAGGTATAATGT
26305836 GTTTG
1 GTTTG
26305841 GGTTCAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (20 bp):
GTTTGAGAAAGGTATAATGT
Found at i:26307129 original size:45 final size:45
Alignment explanation
Indices: 26307079--26307251 Score: 233
Period size: 45 Copynumber: 3.9 Consensus size: 45
26307069 TGTACAGTAC
*
26307079 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCAGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* * *
26307124 TATTCGGGCCTTTGAGCCTCGTAGGCTATAATACCGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
* *
26307169 TATTCGAGCCTTTGAGCCTAGCAGGCTATAATGCTGGTGAGATAT
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
*** * *
26307214 TATTCAAACC-TCGAGCCTAGCAGGCGA-AATGCCGGTGA
1 TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGA
26307252 TTGAATTCAA
Statistics
Matches: 114, Mismatches: 14, Indels: 2
0.88 0.11 0.02
Matches are distributed among these distances:
43 10 0.09
44 15 0.13
45 89 0.78
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.28
Consensus pattern (45 bp):
TATTCGGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAGATAT
Found at i:26313841 original size:19 final size:20
Alignment explanation
Indices: 26313798--26313841 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
26313788 TATAAAGTAA
* *
26313798 GTTTGAGATAGGTATTATGT
1 GTTTGAGAAAGGTATAATGT
*
26313818 TTTTGAGAAAGGT-TAATGT
1 GTTTGAGAAAGGTATAATGT
26313837 GTTTG
1 GTTTG
26313842 GGTTGAATTT
Statistics
Matches: 20, Mismatches: 4, Indels: 1
0.80 0.16 0.04
Matches are distributed among these distances:
19 9 0.45
20 11 0.55
ACGTcount: A:0.25, C:0.00, G:0.30, T:0.45
Consensus pattern (20 bp):
GTTTGAGAAAGGTATAATGT
Found at i:26315145 original size:44 final size:45
Alignment explanation
Indices: 26315070--26315196 Score: 188
Period size: 44 Copynumber: 2.9 Consensus size: 45
26315060 TGTACAGTAC
*
26315070 TATTCGAGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
1 TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
* * *
26315115 TATTCGGGCCTTTGA-CCTAGCAGGCTATAATGCCGATGAGATAT
1 TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
*
26315159 TATTCGGGCC-TCGAGCCTAGCAGGCGA-AATACCGGTGA
1 TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGA
26315197 ATGAATTCGG
Statistics
Matches: 73, Mismatches: 8, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
43 12 0.16
44 48 0.66
45 13 0.18
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.24
Consensus pattern (45 bp):
TATTCGGGCCTTCGAGCCTAGCAGGCGATAATGCCGGTGAGATAT
Found at i:26316587 original size:25 final size:27
Alignment explanation
Indices: 26316550--26316603 Score: 67
Period size: 26 Copynumber: 2.1 Consensus size: 27
26316540 TCAAACATGC
26316550 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
* **
26316576 ATTTCGGT-AATTTTGCACCTAGGGGT
1 ATTTAGGTCAATTTAACACCTAGGGGT
26316602 AT
1 AT
26316604 AACAATAATT
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
25 6 0.25
26 18 0.75
ACGTcount: A:0.24, C:0.15, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACACCTAGGGGT
Found at i:26318119 original size:26 final size:26
Alignment explanation
Indices: 26318088--26318195 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
26318078 TGAAATGCCC
*
26318088 ATCATGGAACATTTACCTAAACCATT
1 ATCATGGAACATTTACCTAACCCATT
26318114 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
* *
26318140 ATCATGGAATATTTACCTAATCCATT
1 ATCATGGAACATTTACCTAACCCATT
26318166 ATCATGGAACATTTACCTAACCCATT
1 ATCATGGAACATTTACCTAACCCATT
26318192 ATCA
1 ATCA
26318196 ATTTGTACCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.36, C:0.24, G:0.07, T:0.32
Consensus pattern (26 bp):
ATCATGGAACATTTACCTAACCCATT
Found at i:26339994 original size:40 final size:40
Alignment explanation
Indices: 26339939--26340592 Score: 1026
Period size: 40 Copynumber: 16.3 Consensus size: 40
26339929 TACAGCAACG
26339939 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
26339979 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
26340019 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
26340059 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
26340099 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
*
26340139 AGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
* * * * *
26340179 AGCCCGAATAAAATC-ACTAGCACAATTGCCTTCGGGTCTT
1 AGCCCGGAT-ATATCAACTCGTACAAATGCCTTCGGGTCTT
* * * *
26340219 AACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
* * * *
26340259 AACCCGGGTATAGCAACTCGCACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
*
26340299 AGCCCGGATATATCAACT-GCACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
*
26340338 AGCCCGGATAAAATCACTTACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGAT-ATATCA---ACTCGTACAAATGCCTTCGGGTCTT
26340382 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
26340422 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
26340462 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
*
26340502 AGCCCGGATATATCAACTCGCACAAATGCCTTCGGGTCTT
1 AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
* * * * *
26340542 AGCCCGGATAAAATC-ACTAGCATAAATGCCTTCGGGACTT
1 AGCCCGGAT-ATATCAACTCGTACAAATGCCTTCGGGTCTT
*
26340582 AGCCCGAATAT
1 AGCCCGGATAT
26340593 CATTCAAATG
Statistics
Matches: 581, Mismatches: 25, Indels: 17
0.93 0.04 0.03
Matches are distributed among these distances:
39 34 0.06
40 502 0.86
41 8 0.01
43 8 0.01
44 29 0.05
ACGTcount: A:0.26, C:0.28, G:0.20, T:0.26
Consensus pattern (40 bp):
AGCCCGGATATATCAACTCGTACAAATGCCTTCGGGTCTT
Found at i:26344468 original size:21 final size:22
Alignment explanation
Indices: 26344424--26344469 Score: 58
Period size: 22 Copynumber: 2.1 Consensus size: 22
26344414 TAATATTTTC
* *
26344424 ATAATTTACTATAATAACCTTT
1 ATAAATTAATATAATAACCTTT
*
26344446 ATAAATTAATATAA-AATCTTT
1 ATAAATTAATATAATAACCTTT
26344467 ATA
1 ATA
26344470 TTGGTTGTCG
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
21 9 0.43
22 12 0.57
ACGTcount: A:0.48, C:0.09, G:0.00, T:0.43
Consensus pattern (22 bp):
ATAAATTAATATAATAACCTTT
Found at i:26346753 original size:15 final size:15
Alignment explanation
Indices: 26346723--26346752 Score: 53
Period size: 14 Copynumber: 2.1 Consensus size: 15
26346713 GGGGGTCGTG
26346723 TGCCTCAAATTTTTT
1 TGCCTCAAATTTTTT
26346738 TGCCTC-AATTTTTT
1 TGCCTCAAATTTTTT
26346752 T
1 T
26346753 TTTGTAGAAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
14 9 0.60
15 6 0.40
ACGTcount: A:0.17, C:0.20, G:0.07, T:0.57
Consensus pattern (15 bp):
TGCCTCAAATTTTTT
Found at i:26351461 original size:27 final size:27
Alignment explanation
Indices: 26351431--26351504 Score: 87
Period size: 27 Copynumber: 2.8 Consensus size: 27
26351421 CAATATCGCA
**
26351431 GCAAAGCTGCCAGTAACAGTAAATGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
* **
26351458 GCAAAGCCACTAGTAACAGTAGTTGTG
1 GCAAAGCCACCAGTAACAGTAAATGTG
*
26351485 GCAGAGCCACCAGT-ACAGTA
1 GCAAAGCCACCAGTAACAGTA
26351505 TTTCCTCCAA
Statistics
Matches: 40, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
26 6 0.15
27 34 0.85
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.18
Consensus pattern (27 bp):
GCAAAGCCACCAGTAACAGTAAATGTG
Found at i:26353780 original size:37 final size:37
Alignment explanation
Indices: 26353732--26353818 Score: 122
Period size: 37 Copynumber: 2.4 Consensus size: 37
26353722 TTTAAATAAG
*
26353732 AAGTATTTGGTTATTTGATAAGTGAACTG-AAATGAAT
1 AAGTATATGGTTATTTGATAAGTGAAC-GAAAATGAAT
* * *
26353769 AAGTATATGGTTGTTTGATATGTGTACGAAAATGAAT
1 AAGTATATGGTTATTTGATAAGTGAACGAAAATGAAT
26353806 AAGTATATGGTTA
1 AAGTATATGGTTA
26353819 AACACTTTGT
Statistics
Matches: 44, Mismatches: 5, Indels: 2
0.86 0.10 0.04
Matches are distributed among these distances:
36 1 0.02
37 43 0.98
ACGTcount: A:0.37, C:0.02, G:0.23, T:0.38
Consensus pattern (37 bp):
AAGTATATGGTTATTTGATAAGTGAACGAAAATGAAT
Found at i:26356680 original size:25 final size:25
Alignment explanation
Indices: 26356650--26356699 Score: 91
Period size: 25 Copynumber: 2.0 Consensus size: 25
26356640 GGAACACAAA
26356650 GTCTATTTCTAAACCTCAGACAGTC
1 GTCTATTTCTAAACCTCAGACAGTC
*
26356675 GTCTATTTCTGAACCTCAGACAGTC
1 GTCTATTTCTAAACCTCAGACAGTC
26356700 TCCTTCATCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.26, C:0.28, G:0.14, T:0.32
Consensus pattern (25 bp):
GTCTATTTCTAAACCTCAGACAGTC
Found at i:26369848 original size:41 final size:40
Alignment explanation
Indices: 26369717--26369909 Score: 244
Period size: 40 Copynumber: 4.8 Consensus size: 40
26369707 GGATATAGCT
* * * *
26369717 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
*
26369756 ACTCACACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
26369796 ACTCGCCCAAATGCCTTCAGGACTTAGCCCGGAATGTAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGG-ATGTAATA
** * *
26369837 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGAACTAGTC
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
* *
26369877 ACTAGCACAAAATGCCTTCAGGACTTAGCCCGG
1 ACTCGCAC-AAATGCCTTCGGGACTTAGCCCGG
26369910 TTATCATCCA
Statistics
Matches: 135, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
39 6 0.04
40 68 0.50
41 61 0.45
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGGATGTAATA
Found at i:26369853 original size:81 final size:80
Alignment explanation
Indices: 26369717--26369909 Score: 253
Period size: 81 Copynumber: 2.4 Consensus size: 80
26369707 GGATATAGCT
* * * *
26369717 ACTCGCTC-AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTT
1 ACTCGCCCAAATGCCTTCAGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTT
**
26369781 AGCCCGGATGTAATA
66 AGCCCGGAACTAATA
* *
26369796 ACTCGCCCAAATGCCTTCAGGACTTAGCCCGGAATGTAATAACTCGCACAAATGCCTTCGGGACT
1 ACTCGCCCAAATGCCTTCAGGACTTAGCCCGG-ATATAATAACTCACACAAATGCCTTCGGGACT
* *
26369861 TAGCCCGGAACTAGTC
65 TAGCCCGGAACTAATA
* *
26369877 ACTAGCACAAAATGCCTTCAGGACTTAGCCCGG
1 ACTCGC-CCAAATGCCTTCAGGACTTAGCCCGG
26369910 TTATCATCCA
Statistics
Matches: 99, Mismatches: 12, Indels: 3
0.87 0.11 0.03
Matches are distributed among these distances:
79 7 0.07
80 21 0.21
81 46 0.46
82 25 0.25
ACGTcount: A:0.28, C:0.30, G:0.21, T:0.21
Consensus pattern (80 bp):
ACTCGCCCAAATGCCTTCAGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTT
AGCCCGGAACTAATA
Found at i:26377860 original size:41 final size:40
Alignment explanation
Indices: 26377743--26377917 Score: 224
Period size: 40 Copynumber: 4.3 Consensus size: 40
26377733 CTCGCTCAAT
* * * * *
26377743 GCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAAT
1 GCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAAA
26377783 GCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAAA
1 GCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAAA
*
26377823 GCCTTCGGGACTTAGCCCGGAATGTAATAACTCGCACAAAT
1 GCCTTCGGGACTTAGCCCGG-ATGTAATAACTCGCACAAAA
** * * * *
26377864 GCCTTCGGGACTTAGCCCGGAACTAGTCACTAGCGCAAAA
1 GCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAAA
26377904 TGCCTTCGGGACTT
1 -GCCTTCGGGACTT
26377918 TGTCCGGTTA
Statistics
Matches: 120, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
40 68 0.57
41 52 0.43
ACGTcount: A:0.28, C:0.28, G:0.23, T:0.21
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATGTAATAACTCGCACAAAA
Found at i:26377870 original size:81 final size:81
Alignment explanation
Indices: 26377740--26377917 Score: 250
Period size: 81 Copynumber: 2.2 Consensus size: 81
26377730 CTACTCGCTC
* * *
26377740 AATGCCTTCGGGACATAGCCCGGATATAGTAACTCACACAAATGCCTTCGGGACTTAGCCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGAA
* *
26377805 GTAATAACTCGCACAA
66 CTAATAACTAGCACAA
* *
26377821 AA-GCCTTCGGGACTTAGCCCGGAATGTAATAACTCGCACAAATGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGG-ATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGA
* * *
26377885 ACTAGTCACTAGCGCAA
65 ACTAATAACTAGCACAA
26377902 AATGCCTTCGGGACTT
1 AATGCCTTCGGGACTT
26377918 TGTCCGGTTA
Statistics
Matches: 85, Mismatches: 10, Indels: 3
0.87 0.10 0.03
Matches are distributed among these distances:
80 19 0.22
81 53 0.62
82 13 0.15
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (81 bp):
AATGCCTTCGGGACTTAGCCCGGATATAATAACTCACACAAATGCCTTCGGGACTTAGCCCGGAA
CTAATAACTAGCACAA
Found at i:26379735 original size:44 final size:44
Alignment explanation
Indices: 26379672--26379760 Score: 178
Period size: 44 Copynumber: 2.0 Consensus size: 44
26379662 GGGTCAATTT
26379672 GGGGCTGTCACAAGCTACGAGAACTAGTATGGGATTAGGAGGGG
1 GGGGCTGTCACAAGCTACGAGAACTAGTATGGGATTAGGAGGGG
26379716 GGGGCTGTCACAAGCTACGAGAACTAGTATGGGATTAGGAGGGG
1 GGGGCTGTCACAAGCTACGAGAACTAGTATGGGATTAGGAGGGG
26379760 G
1 G
26379761 TGAAGCTTGT
Statistics
Matches: 45, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
44 45 1.00
ACGTcount: A:0.27, C:0.13, G:0.42, T:0.18
Consensus pattern (44 bp):
GGGGCTGTCACAAGCTACGAGAACTAGTATGGGATTAGGAGGGG
Found at i:26380577 original size:27 final size:27
Alignment explanation
Indices: 26380547--26380609 Score: 72
Period size: 27 Copynumber: 2.3 Consensus size: 27
26380537 TGCCAGAAAT
* *
26380547 AGTAAATGTGGCAAAGCCACCTGTATC
1 AGTAAATGTGGCAAAGCCACCAGTAAC
* * *
26380574 AGTAATTGAGGCATAGCCACCAGTAAC
1 AGTAAATGTGGCAAAGCCACCAGTAAC
*
26380601 AGTGAATGT
1 AGTAAATGT
26380610 CATATAGTCA
Statistics
Matches: 28, Mismatches: 8, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 28 1.00
ACGTcount: A:0.35, C:0.19, G:0.24, T:0.22
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTAAC
Found at i:26380796 original size:27 final size:27
Alignment explanation
Indices: 26380766--26380856 Score: 119
Period size: 27 Copynumber: 3.4 Consensus size: 27
26380756 GGGCATAATT
26380766 GTCATTTTACCATACAGGGGTATTACA
1 GTCATTTTACCATACAGGGGTATTACA
* *
26380793 GTCATTTTACCCTACAGGGGCATTACA
1 GTCATTTTACCATACAGGGGTATTACA
* * * **
26380820 GTCAATTTACCTTATAGGGGTATTATG
1 GTCATTTTACCATACAGGGGTATTACA
26380847 GTCATTTTAC
1 GTCATTTTAC
26380857 TTTTTTGGGG
Statistics
Matches: 55, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 55 1.00
ACGTcount: A:0.26, C:0.19, G:0.19, T:0.36
Consensus pattern (27 bp):
GTCATTTTACCATACAGGGGTATTACA
Found at i:26384925 original size:27 final size:28
Alignment explanation
Indices: 26384895--26384959 Score: 87
Period size: 28 Copynumber: 2.4 Consensus size: 28
26384885 GGGCATAATC
*
26384895 GTCATTTTACCATAC-AGGGGTACTACG
1 GTCATTTTACCATACAAGGGGCACTACG
* *
26384922 GTCATTTTACCCTACAAGGGGCATTACG
1 GTCATTTTACCATACAAGGGGCACTACG
*
26384950 GTTATTTTAC
1 GTCATTTTAC
26384960 TTATTTTGGG
Statistics
Matches: 33, Mismatches: 4, Indels: 1
0.87 0.11 0.03
Matches are distributed among these distances:
27 14 0.42
28 19 0.58
ACGTcount: A:0.25, C:0.22, G:0.20, T:0.34
Consensus pattern (28 bp):
GTCATTTTACCATACAAGGGGCACTACG
Found at i:26388191 original size:18 final size:18
Alignment explanation
Indices: 26388160--26388210 Score: 50
Period size: 18 Copynumber: 2.8 Consensus size: 18
26388150 TTATCGTTGT
* *
26388160 AATGCTTAATTTGTGAAA
1 AATGCTAAAGTTGTGAAA
*
26388178 AATGACTAAA-TTGTGTAA
1 AATG-CTAAAGTTGTGAAA
*
26388196 AGTGCTAAAGTTGTG
1 AATGCTAAAGTTGTG
26388211 TTCTATTAGC
Statistics
Matches: 28, Mismatches: 3, Indels: 4
0.80 0.09 0.11
Matches are distributed among these distances:
17 5 0.18
18 19 0.68
19 4 0.14
ACGTcount: A:0.37, C:0.06, G:0.22, T:0.35
Consensus pattern (18 bp):
AATGCTAAAGTTGTGAAA
Found at i:26397759 original size:46 final size:45
Alignment explanation
Indices: 26397707--26397873 Score: 128
Period size: 46 Copynumber: 3.6 Consensus size: 45
26397697 TGTGTGAACT
26397707 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTATGAGAGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTA-GAGAGCC
* * *
26397753 AGTGTAAGACCATGT-TGGGGCATGGCATC-G--GCATTGAGATGAGTTCT
1 AGTGTAAGA-CATGTCTGGGACAT-GCATCAGCCACATT-AGA-GAG--CC
* * * ***
26397800 AATGTAAGACATGTCTAGGACATGCATCAGCCTCGGGACGTA-AGCC
1 AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTA-G-AGAGCC
*
26397846 AGTATAAGACATGTCTGGGACATGCATC
1 AGTGTAAGACATGTCTGGGACATGCATC
26397874 GGCTACGAGA
Statistics
Matches: 95, Mismatches: 14, Indels: 24
0.71 0.11 0.18
Matches are distributed among these distances:
44 6 0.06
45 4 0.04
46 53 0.56
47 26 0.27
48 3 0.03
49 2 0.02
50 1 0.01
ACGTcount: A:0.29, C:0.20, G:0.28, T:0.23
Consensus pattern (45 bp):
AGTGTAAGACATGTCTGGGACATGCATCAGCCACATTAGAGAGCC
Found at i:26403054 original size:43 final size:41
Alignment explanation
Indices: 26402993--26403161 Score: 153
Period size: 43 Copynumber: 4.0 Consensus size: 41
26402983 TAGGATTTCT
*
26402993 GATATGTGATCTCGTGTAACACTACATCTGGGACATTGGCATC
1 GATATGTGAT-TCGTGTAAGAC-ACATCTGGGACATTGGCATC
*
26403036 GATATGTGATTACGTGTAAGAC-CAGGTCTGGGGCATTGGCATC
1 GATATGTGATT-CGTGTAAGACACA--TCTGGGACATTGGCATC
* * * * *
26403079 G-TATTTGGTTCGTGTAAGACCCTATCTGGGACAGTGGCATT
1 GATATGTGATTCGTGTAAGACAC-ATCTGGGACATTGGCATC
* * * *
26403120 GATATGTGATTACATGTAAGAACACGTCTGAGACGTTGGCAT
1 GATATGTGATT-CGTGTAAG-ACACATCTGGGACATTGGCAT
26403162 TGTACGATAT
Statistics
Matches: 103, Mismatches: 15, Indels: 16
0.77 0.11 0.12
Matches are distributed among these distances:
41 27 0.26
42 16 0.16
43 57 0.55
44 3 0.03
ACGTcount: A:0.25, C:0.17, G:0.28, T:0.30
Consensus pattern (41 bp):
GATATGTGATTCGTGTAAGACACATCTGGGACATTGGCATC
Found at i:26403107 original size:41 final size:43
Alignment explanation
Indices: 26402993--26403140 Score: 158
Period size: 43 Copynumber: 3.5 Consensus size: 43
26402983 TAGGATTTCT
* * *
26402993 GATATGTGATCT-CGTGTAACACTACATCTGGGACATTGGCATC
1 GATATGTGAT-TACGTGTAAGACCAGATCTGGGACATTGGCATC
* *
26403036 GATATGTGATTACGTGTAAGACCAGGTCTGGGGCATTGGCATC
1 GATATGTGATTACGTGTAAGACCAGATCTGGGACATTGGCATC
* * ** * *
26403079 G-TATTTGGTT-CGTGTAAGACCCTATCTGGGACAGTGGCATT
1 GATATGTGATTACGTGTAAGACCAGATCTGGGACATTGGCATC
*
26403120 GATATGTGATTACATGTAAGA
1 GATATGTGATTACGTGTAAGA
26403141 ACACGTCTGA
Statistics
Matches: 86, Mismatches: 16, Indels: 6
0.80 0.15 0.06
Matches are distributed among these distances:
41 26 0.30
42 15 0.17
43 45 0.52
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (43 bp):
GATATGTGATTACGTGTAAGACCAGATCTGGGACATTGGCATC
Found at i:26404762 original size:33 final size:33
Alignment explanation
Indices: 26404723--26404787 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
26404713 GAACTAGTAA
*
26404723 TGTACATGATTATATTTGACCAGTTGGTAATGT
1 TGTACATGATTATATTTGACCAATTGGTAATGT
26404756 TGTACATGATTATATTTGACCAATTGGTAATG
1 TGTACATGATTATATTTGACCAATTGGTAATG
26404788 CTTAAAAATG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.29, C:0.09, G:0.20, T:0.42
Consensus pattern (33 bp):
TGTACATGATTATATTTGACCAATTGGTAATGT
Found at i:26410180 original size:417 final size:416
Alignment explanation
Indices: 26409361--26410192 Score: 1502
Period size: 417 Copynumber: 2.0 Consensus size: 416
26409351 ATAAATATAG
26409361 TTTACCAAAATCTTTATTATAATCAATGTAATTATAATTTTCGGTAAAACATTATTATATTTATT
1 TTTACCAAAATCTTTATTATAATCAATGTAATTATAATTTTCGGTAAAACATTATTATATTTATT
* *
26409426 TATTTTAATTATGATTATTATGTTCGGATTAAAATTTAATAAATTAAGAATTTGTTATATACATA
66 TATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACATA
*
26409491 CCAACTATAAGGGCAGTTATATATGGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAAA
131 CCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAAA
*
26409556 CCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAGGAAAAATATCTCTGAAAATAGTTTTGGGGA
196 CCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAAGAAAAATATCTCTGAAAATAGTTTTGGGGA
*
26409621 TTTCTTTCGTTCATTGTCAACTAGATGGATTACGAAGAGGTTGGGATCATAAAGATTGCGGCTTG
261 TTTCTTTCGTTCATTGTCAACTAGATGGATTACGAAGAGGTCGGGATCATAAAGATTGCGGCTTG
26409686 GATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGGG
326 GATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGGG
26409751 TAATTCTGAAACCTTTTTCACCCCAT
391 TAATTCTGAAACCTTTTTCACCCCAT
*
26409777 TTTACCAAAATCTTTATTATAATTAATGTAATTATAATTTTCGGTTAAAACATTATTATATTTAT
1 TTTACCAAAATCTTTATTATAATCAATGTAATTATAATTTTCGG-TAAAACATTATTATATTTAT
26409842 TTATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACAT
65 TTATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACAT
26409907 ACCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAA
130 ACCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAA
* * * *
26409972 ACCCGAAGCTTTGCTACTAGGTCTGGTAGCTGTCAAGCAAAATATCTCTGAAAATAGTTTTGGGG
195 ACCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAAGAAAAATATCTCTGAAAATAGTTTTGGGG
* * * *
26410037 ATTTCTTTCGTTCATTGTCAACTGGGTGGATTACGTAGAGGTCGGGATCATAAATATTGCGGCTT
260 ATTTCTTTCGTTCATTGTCAACTAGATGGATTACGAAGAGGTCGGGATCATAAAGATTGCGGCTT
* *
26410102 GGATTTGAAAGCAAAATAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGG
325 GGATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGG
*
26410167 GTAATTTTGAAACCTTTTTCACCCCA
390 GTAATTCTGAAACCTTTTTCACCCCA
26410193 GTTCGTTCCT
Statistics
Matches: 398, Mismatches: 17, Indels: 1
0.96 0.04 0.00
Matches are distributed among these distances:
416 43 0.11
417 355 0.89
ACGTcount: A:0.34, C:0.13, G:0.17, T:0.36
Consensus pattern (416 bp):
TTTACCAAAATCTTTATTATAATCAATGTAATTATAATTTTCGGTAAAACATTATTATATTTATT
TATTTTAATTATGATTATTATGTTCAGATTAAAATTTAATAAATTAAGAATTCGTTATATACATA
CCAACTATAAGGGCAGTTATATATAGAAAGGGAGGAAAACCCTAAAAAGGGAATATATATACAAA
CCCGAAGCTTTCCTACTAGGTCTGGCAGCCGTCAAGAAAAATATCTCTGAAAATAGTTTTGGGGA
TTTCTTTCGTTCATTGTCAACTAGATGGATTACGAAGAGGTCGGGATCATAAAGATTGCGGCTTG
GATTCGAAAGCAAAACAGTATTCTCATTGCCGAGGCTTCATTGTCTATTCAGATTGAAGTTTGGG
TAATTCTGAAACCTTTTTCACCCCAT
Found at i:26421308 original size:28 final size:28
Alignment explanation
Indices: 26421226--26421375 Score: 187
Period size: 28 Copynumber: 5.4 Consensus size: 28
26421216 GAGATTGGCG
* * * *
26421226 CTAAGTGTGCGGGTTTAAATTGTGCAGCA
1 CTAAGTGTGCGAGTTT-GATTATGTAGCA
* *
26421255 CTAAGTGTGCGA-ATTGAATATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
26421282 CTAAGTGTGCGAGTTTGACTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
26421310 CTAAGTGTGCGAGTATGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
26421338 CTAAGTGTGCGAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATGTAGCA
*
26421365 CTGAGTGTGCG
1 CTAAGTGTGCG
26421376 GACTTAATAA
Statistics
Matches: 107, Mismatches: 13, Indels: 4
0.86 0.10 0.03
Matches are distributed among these distances:
27 42 0.39
28 54 0.50
29 11 0.10
ACGTcount: A:0.27, C:0.13, G:0.29, T:0.31
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATGTAGCA
Found at i:26421316 original size:55 final size:55
Alignment explanation
Indices: 26421251--26421375 Score: 189
Period size: 55 Copynumber: 2.3 Consensus size: 55
26421241 TAAATTGTGC
*
26421251 AGCACTAAGTGTGCGAAT-TGAATATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAATATGAATATGTAGCACTAAGTGTGCGAG-TTGACTATAT
* * *
26421306 AGCACTAAGTGTGCGAGTATGATTATGTAGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATATGAATATGTAGCACTAAGTGTGCGAGTTGACTATAT
*
26421361 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26421376 GACTTAATAA
Statistics
Matches: 64, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
55 39 0.61
56 25 0.39
ACGTcount: A:0.28, C:0.13, G:0.29, T:0.30
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAATATGAATATGTAGCACTAAGTGTGCGAGTTGACTATAT
Found at i:26426553 original size:13 final size:13
Alignment explanation
Indices: 26426535--26426560 Score: 52
Period size: 13 Copynumber: 2.0 Consensus size: 13
26426525 CAAAATCATA
26426535 ATTATAATAATTT
1 ATTATAATAATTT
26426548 ATTATAATAATTT
1 ATTATAATAATTT
26426561 CGGTAAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 13 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (13 bp):
ATTATAATAATTT
Found at i:26429634 original size:84 final size:83
Alignment explanation
Indices: 26429493--26429658 Score: 264
Period size: 84 Copynumber: 2.0 Consensus size: 83
26429483 TGCAAAAGCA
*
26429493 AGACTATTGATTTGAGGTGCGCAAATAACGAGATAATTCGAATTGAGTCTACGGACTTAAGG-GG
1 AGACTATTGATTTGAGGTGCGCAAATAACGAGATAATCCGAATTGAGTCTACGGACTT--GGAGG
26429557 GTTGCCAGCTGTAATATCAG
64 GTTGCCAGCTGTAATATCAG
*
26429577 AGACTATTGATTTGAGGTGCGCAAATAACGA-AGTAATCCGAGTTGAGTCTACGGACTTGGATGG
1 AGACTATTGATTTGAGGTGCGCAAATAACGAGA-TAATCCGAATTGAGTCTACGGACTTGGA-GG
26429641 GTTGCCAGCTGTAATATC
64 GTTGCCAGCTGTAATATC
26429659 CTCAATGTTG
Statistics
Matches: 77, Mismatches: 2, Indels: 6
0.91 0.02 0.07
Matches are distributed among these distances:
82 2 0.03
83 1 0.01
84 74 0.96
ACGTcount: A:0.30, C:0.15, G:0.28, T:0.28
Consensus pattern (83 bp):
AGACTATTGATTTGAGGTGCGCAAATAACGAGATAATCCGAATTGAGTCTACGGACTTGGAGGGT
TGCCAGCTGTAATATCAG
Found at i:26434330 original size:39 final size:40
Alignment explanation
Indices: 26434235--26434496 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
26434225 TTGAATGATG
*
26434235 TCCGGGCTAAGTCCCGAAGGC--TTGTGCTA-AGTGAC-AAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-T-ACTAAT
*
26434273 ATCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAT
26434314 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
26434353 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
* *
26434392 TCCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
*
26434431 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGA-ATTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGA-TACTAAT
* *
26434470 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
26434497 AACGAGGAGC
Statistics
Matches: 203, Mismatches: 11, Indels: 17
0.88 0.05 0.07
Matches are distributed among these distances:
39 132 0.65
40 59 0.29
41 11 0.05
42 1 0.00
ACGTcount: A:0.26, C:0.23, G:0.27, T:0.24
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGATACTAAT
Found at i:26440503 original size:79 final size:80
Alignment explanation
Indices: 26440405--26440587 Score: 230
Period size: 79 Copynumber: 2.3 Consensus size: 80
26440395 TACTCGTTCA
* *
26440405 AATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAAATGCCTTCGAGA-CTTAACCCGG
1 AATGCCTTCGGGACTTAGCCCGGAAT-TAGTAACTCGCACAAATGCCTTCG-GATCTTAACCCGG
* *
26440468 ATTTAGTAAC-TCGCACC
64 ATATAGTAACTTAGCA-C
**
26440485 AATGCCTTCGGG-CTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAGTCCGGAT
1 AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
* *
26440549 ATGGTCACTTAGCAC
66 ATAGTAACTTAGCAC
*
26440564 AAAGCCTTCGGGACTTAGCCCGGA
1 AATGCCTTCGGGACTTAGCCCGGA
26440588 CATCATTCGA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 2 0.02
79 60 0.67
80 28 0.31
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (80 bp):
AATGCCTTCGGGACTTAGCCCGGAATTAGTAACTCGCACAAATGCCTTCGGATCTTAACCCGGAT
ATAGTAACTTAGCAC
Found at i:26440587 original size:40 final size:40
Alignment explanation
Indices: 26440403--26440587 Score: 225
Period size: 40 Copynumber: 4.7 Consensus size: 40
26440393 GCTACTCGTT
* *
26440403 CAAATGCCTTCGGGACATAGCCCGGTTATAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
* * *
26440443 CAAATGCCTTCGAGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
*
26440483 CCAATGCCTTCGGG-CTTAGCCCGGA-ATTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGATA-TAGTAACTCGCA
* * * *
26440522 CAAATGCCTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGATATAGTAAC-TCGCA
26440563 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26440588 CATCATTCGA
Statistics
Matches: 124, Mismatches: 15, Indels: 12
0.82 0.10 0.08
Matches are distributed among these distances:
38 2 0.02
39 32 0.26
40 78 0.63
41 12 0.10
ACGTcount: A:0.26, C:0.28, G:0.22, T:0.24
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGATATAGTAACTCGCA
Found at i:26445727 original size:41 final size:42
Alignment explanation
Indices: 26445680--26445797 Score: 132
Period size: 43 Copynumber: 2.8 Consensus size: 42
26445670 TATGTGGTCT
* * *
26445680 CATGTAAGACCACATCTGGGACATTGGCATTGTATTTGATT-
1 CATGTAAGACCACGTCTGGGATATTGGCATTGTATGTGATTG
* * * *
26445721 CGTGTAAGACC-CTGTCTAGGATAGTGGCATCGATATGTGATTG
1 CATGTAAGACCAC-GTCTGGGATATTGGCATTG-TATGTGATTG
*
26445764 CATGTAAGACCACGTCTGGGATGTTGGCATTGTA
1 CATGTAAGACCACGTCTGGGATATTGGCATTGTA
26445798 CGTTATGCGT
Statistics
Matches: 61, Mismatches: 12, Indels: 7
0.76 0.15 0.09
Matches are distributed among these distances:
40 1 0.02
41 24 0.39
42 10 0.16
43 25 0.41
44 1 0.02
ACGTcount: A:0.25, C:0.17, G:0.27, T:0.31
Consensus pattern (42 bp):
CATGTAAGACCACGTCTGGGATATTGGCATTGTATGTGATTG
Found at i:26445792 original size:43 final size:41
Alignment explanation
Indices: 26445670--26445793 Score: 117
Period size: 41 Copynumber: 3.0 Consensus size: 41
26445660 GGATTTTTGA
* * ** *
26445670 TATGTGGTCTCATGTAAGACCACATCTGGGACATTGGCATTG
1 TATGTGAT-TCATGTAAGACCACGTCTGGGATGTTGGCATCG
* * *
26445712 TATTTGATTCGTGTAAGACC-CTGTCTAGGATAG-TGGCATCG
1 TATGTGATTCATGTAAGACCAC-GTCTGGGAT-GTTGGCATCG
26445753 ATATGTGATTGCATGTAAGACCACGTCTGGGATGTTGGCAT
1 -TATGTGATT-CATGTAAGACCACGTCTGGGATGTTGGCAT
26445794 TGTACGTTAT
Statistics
Matches: 65, Mismatches: 11, Indels: 11
0.75 0.13 0.13
Matches are distributed among these distances:
40 1 0.02
41 24 0.37
42 15 0.23
43 24 0.37
44 1 0.02
ACGTcount: A:0.23, C:0.17, G:0.27, T:0.32
Consensus pattern (41 bp):
TATGTGATTCATGTAAGACCACGTCTGGGATGTTGGCATCG
Found at i:26469036 original size:116 final size:116
Alignment explanation
Indices: 26468805--26469028 Score: 439
Period size: 116 Copynumber: 1.9 Consensus size: 116
26468795 AAAAGATTAT
26468805 GGACTAAATTGCAAAATCTTTGTATTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCAT
1 GGACTAAATTGCAAAATCTTTGTATTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCAT
*
26468870 AATGGTTATTTTTAAGTTATTGATGTTAATTATATGTTATGCTAAATTTTA
66 AATGGTTATTTTTAAGTTATTGATGTTAATTATATGATATGCTAAATTTTA
26468921 GGACTAAATTGCAAAATCTTTGTATTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCAT
1 GGACTAAATTGCAAAATCTTTGTATTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCAT
26468986 AATGGTTATTTTTAAGTTATTGATGTTAATTATATGATATGCT
66 AATGGTTATTTTTAAGTTATTGATGTTAATTATATGATATGCT
26469029 GATTTTTAAT
Statistics
Matches: 107, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
116 107 1.00
ACGTcount: A:0.33, C:0.07, G:0.18, T:0.42
Consensus pattern (116 bp):
GGACTAAATTGCAAAATCTTTGTATTTTGGTACCAAGGTAAGTTCATGTGTAAATAATGTAGCAT
AATGGTTATTTTTAAGTTATTGATGTTAATTATATGATATGCTAAATTTTA
Found at i:26471442 original size:27 final size:27
Alignment explanation
Indices: 26471411--26471750 Score: 301
Period size: 27 Copynumber: 12.6 Consensus size: 27
26471401 TTAGTTTACC
** * *
26471411 AAATTACTGAAATACCCTCAAATTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* *
26471438 AAATTACCAAAGTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* *** *
26471465 GAATTACCATTTTACCCTCGATTTATA
1 AAATTACCAAAATACCCTCGATTTGTA
* ***** **
26471492 GAATTACTGTTTTACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
* **
26471519 AAATTACTAAAATACCCTCGATTTACA
1 AAATTACCAAAATACCCTCGATTTGTA
**
26471546 AAATTACCAAAATACCCTCGATCAGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
26471573 AAATTACCAAAATACCCTAG-TTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
* * * *
26471599 AAATTGCTAAAATACCCTTGGTTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
*
26471626 AAATTA-CAGAAATACCCTCAATTTGTA
1 AAATTACCA-AAATACCCTCGATTTGTA
*
26471653 AAATTACCAAAATACCC-CTAGTTTGTA
1 AAATTACCAAAATACCCTCGA-TTTGTA
* * *
26471680 AAATTACCAAAATGCCACT-GGTTTGTG
1 AAATTACCAAAATACC-CTCGATTTGTA
* *
26471707 AAATTACCGAAATACCCTCAATTTGTA
1 AAATTACCAAAATACCCTCGATTTGTA
26471734 AAATTACCAAAATACCC
1 AAATTACCAAAATACCC
26471751 CTGATTTACA
Statistics
Matches: 261, Mismatches: 45, Indels: 14
0.82 0.14 0.04
Matches are distributed among these distances:
26 26 0.10
27 232 0.89
28 3 0.01
ACGTcount: A:0.39, C:0.21, G:0.09, T:0.31
Consensus pattern (27 bp):
AAATTACCAAAATACCCTCGATTTGTA
Found at i:26471589 original size:81 final size:79
Alignment explanation
Indices: 26471504--26471778 Score: 286
Period size: 81 Copynumber: 3.4 Consensus size: 79
26471494 ATTACTGTTT
* ** * *
26471504 TACCCTCGATTTACAAAATTACTAAAATACCCTCGATTTACAAAATTACCAAAATACCCTCGATC
1 TACCC-CGATTTACAAAATTACTAAAATACCCT-GGTTTGTAAAATTACCAAAATACCCTCAATT
*
26471569 AGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
* ** *
26471585 TA-CCCTAGTTTGTAAAATTGCTAAAATACCCTTGGTTTGTAAAATTA-CAGAAATACCCTCAAT
1 TACCCCGA-TTTACAAAATTACTAAAATACCC-TGGTTTGTAAAATTACCA-AAATACCCTCAAT
26471648 TTGTAAAATTACCAAAA
63 TTGTAAAATTACCAAAA
* ** * * * *
26471665 TACCCCTAGTTTGTAAAATTACCAAAATGCCACTGGTTTGTGAAATTACCGAAATACCCTCAATT
1 TACCCCGA-TTTACAAAATTACTAAAATACC-CTGGTTTGTAAAATTACCAAAATACCCTCAATT
26471730 TGTAAAATTACCAAAA
64 TGTAAAATTACCAAAA
*
26471746 TACCCCTGATTTACAAAGTTAC-AGAAATACCCT
1 TACCCC-GATTTACAAAATTACTA-AAATACCCT
26471779 TGACTTTCTA
Statistics
Matches: 166, Mismatches: 20, Indels: 17
0.82 0.10 0.08
Matches are distributed among these distances:
79 4 0.02
80 65 0.39
81 94 0.57
82 3 0.02
ACGTcount: A:0.40, C:0.22, G:0.09, T:0.29
Consensus pattern (79 bp):
TACCCCGATTTACAAAATTACTAAAATACCCTGGTTTGTAAAATTACCAAAATACCCTCAATTTG
TAAAATTACCAAAA
Found at i:26471828 original size:27 final size:27
Alignment explanation
Indices: 26471789--26471840 Score: 79
Period size: 27 Copynumber: 1.9 Consensus size: 27
26471779 TGACTTTCTA
26471789 AAAATTATGGAAATACCATTGGTTTAC
1 AAAATTATGGAAATACCATTGGTTTAC
*
26471816 AAAATTACT-GAAATACCTTTGGTTT
1 AAAATTA-TGGAAATACCATTGGTTT
26471841 GTAGATTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
27 22 0.96
28 1 0.04
ACGTcount: A:0.38, C:0.12, G:0.13, T:0.37
Consensus pattern (27 bp):
AAAATTATGGAAATACCATTGGTTTAC
Found at i:26471932 original size:27 final size:26
Alignment explanation
Indices: 26471857--26471958 Score: 80
Period size: 27 Copynumber: 3.8 Consensus size: 26
26471847 TTACCAAAAC
* * * *
26471857 ACCCTTATAGGATGAAATGACTAAAAT
1 ACCCCTATAGG-TAAAATGACCATAAT
*
26471884 ACCCCTATTAGGTAAAAAGACCATAA-
1 ACCCCTA-TAGGTAAAATGACCATAAT
* *
26471910 AGCCCCTATAGGGTAAAGTGACCGTAAT
1 A-CCCCTATA-GGTAAAATGACCATAAT
*
26471938 ACCCCTGTATGGTAAAATGAC
1 ACCCCTATA-GGTAAAATGAC
26471959 GAATATGCCC
Statistics
Matches: 60, Mismatches: 11, Indels: 8
0.76 0.14 0.10
Matches are distributed among these distances:
26 3 0.05
27 52 0.87
28 5 0.08
ACGTcount: A:0.39, C:0.21, G:0.18, T:0.23
Consensus pattern (26 bp):
ACCCCTATAGGTAAAATGACCATAAT
Found at i:26473484 original size:40 final size:40
Alignment explanation
Indices: 26473437--26473581 Score: 184
Period size: 40 Copynumber: 3.6 Consensus size: 40
26473427 CTCACACAAG
* * * * *
26473437 GCCTTCGGGTCTTAACCCGGATATGGTCACTAGCATAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
26473477 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
1 GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
* * * *
26473517 GCCTTC-GGATCTTAGTCCGAATGTAGTCGCTTAGCACAAAA
1 GCCTTCGGGA-CTTAGCCCGGATATAGTCGC-TAGCACAAAT
26473558 GCCTTCGGGACTTAGCCCGGATAT
1 GCCTTCGGGACTTAGCCCGGATAT
26473582 CATTCGAGTA
Statistics
Matches: 90, Mismatches: 12, Indels: 5
0.84 0.11 0.05
Matches are distributed among these distances:
39 3 0.03
40 58 0.64
41 26 0.29
42 3 0.03
ACGTcount: A:0.24, C:0.26, G:0.24, T:0.26
Consensus pattern (40 bp):
GCCTTCGGGACTTAGCCCGGATATAGTCGCTAGCACAAAT
Found at i:26474811 original size:38 final size:38
Alignment explanation
Indices: 26474769--26474844 Score: 152
Period size: 38 Copynumber: 2.0 Consensus size: 38
26474759 CAAGAACTCC
26474769 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
26474807 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
1 TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
26474845 AAAGGATGAA
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
38 38 1.00
ACGTcount: A:0.32, C:0.24, G:0.13, T:0.32
Consensus pattern (38 bp):
TTCCTCCTTCCTTAGAATTTTCGGCCAAAAGAAATGAA
Found at i:26475972 original size:16 final size:16
Alignment explanation
Indices: 26475951--26475981 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
26475941 CAAATATGGG
26475951 CATGACATTCTGCATA
1 CATGACATTCTGCATA
*
26475967 CATGACATTTTGCAT
1 CATGACATTCTGCAT
26475982 TGGGTTGGGT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (16 bp):
CATGACATTCTGCATA
Found at i:26476097 original size:52 final size:51
Alignment explanation
Indices: 26476015--26476171 Score: 232
Period size: 52 Copynumber: 3.1 Consensus size: 51
26476005 GAGGAAGTGC
*
26476015 AAAAGGGCTTATGCCCCAGTTTACCTAAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCC-AGTTTATTG
*
26476067 AAAAGGGCTTATGCCCCGGTTTACCGAAAAGGGCTTATGCGCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGC-CCAGTTTATTG
*
26476119 AAAAGGGCTT-TGCCCTAGTTTACCGAAAAGGGCTT-TGCCCCAG-TTATT-
1 AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATG-CCCAGTTTATTG
26476167 AAAAG
1 AAAAG
26476172 AGGTTAGGCC
Statistics
Matches: 99, Mismatches: 4, Indels: 8
0.89 0.04 0.07
Matches are distributed among these distances:
48 5 0.05
49 5 0.05
50 6 0.06
51 24 0.24
52 57 0.58
53 2 0.02
ACGTcount: A:0.27, C:0.21, G:0.24, T:0.28
Consensus pattern (51 bp):
AAAAGGGCTTATGCCCCAGTTTACCGAAAAGGGCTTATGCCCAGTTTATTG
Found at i:26476146 original size:25 final size:26
Alignment explanation
Indices: 26476015--26476163 Score: 203
Period size: 26 Copynumber: 5.8 Consensus size: 26
26476005 GAGGAAGTGC
*
26476015 AAAAGGGCTTATGCCCCAGTTTACCT
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
26476041 AAAAGGGCTTATGCCCTAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
26476067 AAAAGGGCTTATGCCCCGGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
* **
26476093 AAAAGGGCTTATGCGCCAGTTTATTG
1 AAAAGGGCTTATGCCCCAGTTTACCG
*
26476119 AAAAGGGCTT-TGCCCTAGTTTACCG
1 AAAAGGGCTTATGCCCCAGTTTACCG
26476144 AAAAGGGCTT-TGCCCCAGTT
1 AAAAGGGCTTATGCCCCAGTT
26476164 ATTAAAAGAG
Statistics
Matches: 106, Mismatches: 17, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
25 30 0.28
26 76 0.72
ACGTcount: A:0.26, C:0.22, G:0.24, T:0.28
Consensus pattern (26 bp):
AAAAGGGCTTATGCCCCAGTTTACCG
Found at i:26476458 original size:31 final size:31
Alignment explanation
Indices: 26476381--26476459 Score: 131
Period size: 31 Copynumber: 2.5 Consensus size: 31
26476371 CCGTTACAAT
*
26476381 AAAGGCTTCGGCCCAATGATATAATTTATGA
1 AAAGGCTTCGGCCCAGTGATATAATTTATGA
*
26476412 AAAGGCTTCGGCCCAGTGATATGATTTATGA
1 AAAGGCTTCGGCCCAGTGATATAATTTATGA
*
26476443 AAAGGCTTCAGCCCAGT
1 AAAGGCTTCGGCCCAGT
26476460 AACCGTTAAA
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
31 45 1.00
ACGTcount: A:0.32, C:0.19, G:0.23, T:0.27
Consensus pattern (31 bp):
AAAGGCTTCGGCCCAGTGATATAATTTATGA
Found at i:26476792 original size:19 final size:21
Alignment explanation
Indices: 26476768--26476806 Score: 55
Period size: 21 Copynumber: 2.0 Consensus size: 21
26476758 ATAAGGCCAT
26476768 TTTAAT-TATTT-TTAATAAC
1 TTTAATCTATTTGTTAATAAC
*
26476787 TTTAATCTGTTTGTTAATAA
1 TTTAATCTATTTGTTAATAA
26476807 ATGGGCTAGA
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
19 6 0.35
20 4 0.24
21 7 0.41
ACGTcount: A:0.33, C:0.05, G:0.05, T:0.56
Consensus pattern (21 bp):
TTTAATCTATTTGTTAATAAC
Found at i:26479423 original size:30 final size:32
Alignment explanation
Indices: 26479389--26479461 Score: 96
Period size: 30 Copynumber: 2.3 Consensus size: 32
26479379 TACTCAATTG
*
26479389 AATTTTCATACATACTTGTA-CC-ATCGTACC
1 AATTTTCATACATACATGTACCCTATCGTACC
* *
26479419 AATTTCCATACATACATGTACCCTCTCGTACC
1 AATTTTCATACATACATGTACCCTATCGTACC
*
26479451 AATTCTCATAC
1 AATTTTCATAC
26479462 TCAATCATAT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
30 18 0.50
31 2 0.06
32 16 0.44
ACGTcount: A:0.30, C:0.30, G:0.05, T:0.34
Consensus pattern (32 bp):
AATTTTCATACATACATGTACCCTATCGTACC
Found at i:26479461 original size:32 final size:29
Alignment explanation
Indices: 26479392--26479461 Score: 86
Period size: 32 Copynumber: 2.3 Consensus size: 29
26479382 TCAATTGAAT
*
26479392 TTTCATACATACTTGTACCATCGTACCAA
1 TTTCATACATACATGTACCATCGTACCAA
*
26479421 TTTCCATACATACATGTACCCTCTCGTACCAA
1 TTT-CATACATACATGTA-CC-ATCGTACCAA
26479453 TTCTCATAC
1 TT-TCATAC
26479462 TCAATCATAT
Statistics
Matches: 35, Mismatches: 2, Indels: 5
0.83 0.05 0.12
Matches are distributed among these distances:
29 3 0.09
30 13 0.37
31 2 0.06
32 16 0.46
33 1 0.03
ACGTcount: A:0.29, C:0.31, G:0.06, T:0.34
Consensus pattern (29 bp):
TTTCATACATACATGTACCATCGTACCAA
Found at i:26479565 original size:28 final size:28
Alignment explanation
Indices: 26479534--26479629 Score: 102
Period size: 28 Copynumber: 3.4 Consensus size: 28
26479524 GATACCTCAC
*
26479534 ACACTAAGTGTCGTTCTGGATGTTTCGT
1 ACACTAAGTGCCGTTCTGGATGTTTCGT
* * * ** *
26479562 ACACTAAGTGCCGTCCTCGTTACTTCGC
1 ACACTAAGTGCCGTTCTGGATGTTTCGT
* *
26479590 ACACTAAGTGCCATTCTGGATGTATCGT
1 ACACTAAGTGCCGTTCTGGATGTTTCGT
*
26479618 ACACAAAGTGCC
1 ACACTAAGTGCC
26479630 ATCCCCGATA
Statistics
Matches: 52, Mismatches: 16, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
28 52 1.00
ACGTcount: A:0.23, C:0.26, G:0.21, T:0.30
Consensus pattern (28 bp):
ACACTAAGTGCCGTTCTGGATGTTTCGT
Done.