Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 74 of 297
Found at i:26479658 original size:56 final size:56
Alignment explanation
Indices: 26479521--26479642 Score: 163
Period size: 56 Copynumber: 2.2 Consensus size: 56
26479511 AGATGCCAAA
* * * * * * *
26479521 CCCGATACCTCACACACTAAGTGTCGTTCTGGATGTTTCGTACACTAAGTGCCGTC
1 CCCGATACTTCGCACACTAAGTGCCATTCTGGATGTATCGTACACAAAGTGCCATC
* *
26479577 CTCGTTACTTCGCACACTAAGTGCCATTCTGGATGTATCGTACACAAAGTGCCATC
1 CCCGATACTTCGCACACTAAGTGCCATTCTGGATGTATCGTACACAAAGTGCCATC
26479633 CCCGATACTT
1 CCCGATACTT
26479643 TGTACGTTAA
Statistics
Matches: 55, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
56 55 1.00
ACGTcount: A:0.23, C:0.30, G:0.18, T:0.29
Consensus pattern (56 bp):
CCCGATACTTCGCACACTAAGTGCCATTCTGGATGTATCGTACACAAAGTGCCATC
Found at i:26495756 original size:45 final size:45
Alignment explanation
Indices: 26495692--26495780 Score: 169
Period size: 45 Copynumber: 2.0 Consensus size: 45
26495682 TTTATGATTT
*
26495692 GATTAAGTCATGTCATATAATCATAACGAATAAACGGAGATATAA
1 GATTAAGTCATGTCATATAAGCATAACGAATAAACGGAGATATAA
26495737 GATTAAGTCATGTCATATAAGCATAACGAATAAACGGAGATATA
1 GATTAAGTCATGTCATATAAGCATAACGAATAAACGGAGATATA
26495781 GTGATTAGTT
Statistics
Matches: 43, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 43 1.00
ACGTcount: A:0.46, C:0.11, G:0.17, T:0.26
Consensus pattern (45 bp):
GATTAAGTCATGTCATATAAGCATAACGAATAAACGGAGATATAA
Found at i:26496072 original size:40 final size:40
Alignment explanation
Indices: 26495983--26496203 Score: 295
Period size: 40 Copynumber: 5.6 Consensus size: 40
26495973 TATTCGAATG
* * *
26495983 ATATCCGGGTTAAGTCCCGAAGGCATTTAT-CTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
26496022 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* *
26496062 ATATCCGGGCTAAGTCCCAAAGGCATTTGTGCTAGTGATT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* * *
26496102 ATATCTGGGCTAAGTCCCGAAGGCTTTTGTGCTATTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
* * * *
26496142 ATATCCGGGCTAAGACCCGAAGGCATTTGCGCGAGTTG-CT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTA-TTGATT
*
26496182 ATATCC-GGCTAAATCCCGAAGG
1 ATATCCGGGCTAAGTCCCGAAGG
26496204 TACTTGGGTT
Statistics
Matches: 163, Mismatches: 17, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
39 42 0.26
40 118 0.72
41 3 0.02
ACGTcount: A:0.24, C:0.21, G:0.25, T:0.29
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTATTGATT
Found at i:26504099 original size:79 final size:82
Alignment explanation
Indices: 26503988--26504172 Score: 229
Period size: 79 Copynumber: 2.3 Consensus size: 82
26503978 GCTACTCGTT
* * *
26503988 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAACTCGCACAATTGCCTTCGGGA-CTTAACCC
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTC-GGATCTTAACCC
* *
26504051 GGATTTAGTAAC-TCGCA
65 GGATATAGTAACTTAGCA
* **
26504068 CAAATGCCTTCGGG-CTTAGCCCGGAAT-TAGTATCTCGCACAAATGCCTTCGGATCTTAGTCCG
1 CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
* *
26504131 GATATGGTCACTTAGCA
66 GATATAGTAACTTAGCA
26504148 CAAA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
26504173 CATCATTCAA
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 54 0.59
80 34 0.37
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.25
Consensus pattern (82 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATATAGTAACTCGCACAAATGCCTTCGGATCTTAACCCG
GATATAGTAACTTAGCA
Found at i:26504172 original size:40 final size:40
Alignment explanation
Indices: 26503969--26504172 Score: 229
Period size: 40 Copynumber: 5.1 Consensus size: 40
26503959 CGGAATTTAA
** *
26503969 CCGGATATAGCT-ACTCGTTCAAATGCCTTCGGGACATAGC
1 CCGGATATAG-TAACTCGCACAAATGCCTTCGGGACTTAGC
* * *
26504009 CCGGTTATAGTAACTCGCACAATTGCCTTCGGGACTTAAC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
*
26504049 CCGGATTTAGTAACTCGCACAAATGCCTTCGGG-CTTAGC
1 CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
* *
26504088 CCGGA-ATTAGTATCTCGCACAAATGCCTTC-GGATCTTAGT
1 CCGGATA-TAGTAACTCGCACAAATGCCTTCGGGA-CTTAGC
* * *
26504128 CCGGATATGGTCACTTAGCACAAA-GCCTTCGGGACTTAGC
1 CCGGATATAGTAAC-TCGCACAAATGCCTTCGGGACTTAGC
26504168 CCGGA
1 CCGGA
26504173 CATCATTCAA
Statistics
Matches: 139, Mismatches: 18, Indels: 14
0.81 0.11 0.08
Matches are distributed among these distances:
38 2 0.01
39 33 0.24
40 92 0.66
41 12 0.09
ACGTcount: A:0.25, C:0.27, G:0.23, T:0.25
Consensus pattern (40 bp):
CCGGATATAGTAACTCGCACAAATGCCTTCGGGACTTAGC
Found at i:26512737 original size:26 final size:26
Alignment explanation
Indices: 26512679--26512737 Score: 100
Period size: 26 Copynumber: 2.3 Consensus size: 26
26512669 CAAACTATTC
26512679 GGTTAAACTTGAAATTGAATAAAAAT
1 GGTTAAACTTGAAATTGAATAAAAAT
**
26512705 GACTAAACTTGAAATTGAATAAAAAT
1 GGTTAAACTTGAAATTGAATAAAAAT
26512731 GGTTAAA
1 GGTTAAA
26512738 TTGCATGTTT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 29 1.00
ACGTcount: A:0.51, C:0.05, G:0.15, T:0.29
Consensus pattern (26 bp):
GGTTAAACTTGAAATTGAATAAAAAT
Found at i:26513232 original size:114 final size:114
Alignment explanation
Indices: 26513020--26513242 Score: 365
Period size: 114 Copynumber: 2.0 Consensus size: 114
26513010 TATGCCTTAA
* *
26513020 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATGAATTAACATAACG
1 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTAACATAACA
**
26513085 TCGATCATTGATTGAGCTATTCTGAATTATTACTGCAAATCAGTTTTGT
66 TCGATCATTGATTGAGCTATTCTGAACCATTACTGCAAATCAGTTTTGT
*
26513134 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTGACATAACA
1 TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTAACATAACA
* ** *
26513199 TCGATCATTGATTGAGCTATTTTGGGCCGTTACTGCAAATCAGT
66 TCGATCATTGATTGAGCTATTCTGAACCATTACTGCAAATCAGT
26513243 CCTGTAAGTT
Statistics
Matches: 100, Mismatches: 9, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
114 100 1.00
ACGTcount: A:0.34, C:0.09, G:0.18, T:0.39
Consensus pattern (114 bp):
TTGTATAATGTTTGGATTATATTGATGTGTGTAATTGAAAATGAAAATAATAAATTAACATAACA
TCGATCATTGATTGAGCTATTCTGAACCATTACTGCAAATCAGTTTTGT
Found at i:26515147 original size:40 final size:40
Alignment explanation
Indices: 26515078--26515170 Score: 102
Period size: 40 Copynumber: 2.3 Consensus size: 40
26515068 CGAAAGTGTT
*
26515078 TGGCACTAAGTGTGCAATTTAATAAAGCTTCGGCTACA-AA
1 TGGCACTAAGTGTGCAATTGAAT-AAGCTTCGGCTACATAA
* *
26515118 TGGCACTAAGTGTGCGAATTGGCAT-AGCTTCGGCTATATAA
1 TGGCACTAAGTGTGC-AATT-GAATAAGCTTCGGCTACATAA
*
26515159 -GGCACCAAGTGT
1 TGGCACTAAGTGT
26515171 ACGATATCGA
Statistics
Matches: 46, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
40 38 0.83
41 6 0.13
42 2 0.04
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.27
Consensus pattern (40 bp):
TGGCACTAAGTGTGCAATTGAATAAGCTTCGGCTACATAA
Found at i:26517320 original size:46 final size:46
Alignment explanation
Indices: 26517193--26517321 Score: 131
Period size: 46 Copynumber: 2.8 Consensus size: 46
26517183 TGGTTGAGTT
* *
26517193 CCGAACTCGTTGAGTTGAGTCTGAGTTCGTGA--GATGTAACTAGGCA
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCGTTATGGATGTAAC-A-GCA
* * *
26517239 TCCGAGCTCGTTAAGTTGAGTCCGAGTTCACTTATGGATGTGAAC-GC-
1 -CCGAGCTCGTTGAGTTGAGTCTGAGTTC-GTTATGGATGT-AACAGCA
26517286 CCGAGCTCGTTGAGTTGAGTCTGAGTTCGTTTATGG
1 CCGAGCTCGTTGAGTTGAGTCTGAGTTCG-TTATGG
26517322 GCGGGTTACA
Statistics
Matches: 69, Mismatches: 8, Indels: 11
0.78 0.09 0.12
Matches are distributed among these distances:
46 32 0.46
47 25 0.36
48 4 0.06
50 5 0.07
51 3 0.04
ACGTcount: A:0.20, C:0.19, G:0.30, T:0.31
Consensus pattern (46 bp):
CCGAGCTCGTTGAGTTGAGTCTGAGTTCGTTATGGATGTAACAGCA
Found at i:26521049 original size:21 final size:21
Alignment explanation
Indices: 26521025--26521070 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
26521015 TCTGTTTAAC
* *
26521025 CTTATTGGTTTCCGTTCAACT
1 CTTATGGGTTTCCATTCAACT
* *
26521046 CTTATGGGTTTTCATTCAGCT
1 CTTATGGGTTTCCATTCAACT
26521067 CTTA
1 CTTA
26521071 CGAGCTTCTG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (21 bp):
CTTATGGGTTTCCATTCAACT
Found at i:26523993 original size:20 final size:20
Alignment explanation
Indices: 26523960--26523999 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
26523950 AAGTGTATAC
*
26523960 AGAGGCACCAAAGTGCAAAT
1 AGAGGCACCAAAGTACAAAT
* *
26523980 AGAGGCATCGAAGTACAAAT
1 AGAGGCACCAAAGTACAAAT
26524000 CCTGTACAAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.45, C:0.17, G:0.25, T:0.12
Consensus pattern (20 bp):
AGAGGCACCAAAGTACAAAT
Found at i:26527697 original size:20 final size:19
Alignment explanation
Indices: 26527658--26527707 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 19
26527648 TTGGTGTAGG
26527658 AATATCGATACCTTAGGAA
1 AATATCGATACCTTAGGAA
26527677 ATATATCGATACCTT-GAGAA
1 A-ATATCGATACCTTAG-GAA
26527697 AAGTATCGATA
1 AA-TATCGATA
26527708 TCGGATCGAT
Statistics
Matches: 28, Mismatches: 0, Indels: 5
0.85 0.00 0.15
Matches are distributed among these distances:
19 3 0.11
20 25 0.89
ACGTcount: A:0.42, C:0.14, G:0.16, T:0.28
Consensus pattern (19 bp):
AATATCGATACCTTAGGAA
Found at i:26533565 original size:23 final size:23
Alignment explanation
Indices: 26533538--26533587 Score: 100
Period size: 23 Copynumber: 2.2 Consensus size: 23
26533528 TACTTAGCTT
26533538 ACAAGCACTTTATGACTACTTGC
1 ACAAGCACTTTATGACTACTTGC
26533561 ACAAGCACTTTATGACTACTTGC
1 ACAAGCACTTTATGACTACTTGC
26533584 ACAA
1 ACAA
26533588 TGTAGTTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.34, C:0.26, G:0.12, T:0.28
Consensus pattern (23 bp):
ACAAGCACTTTATGACTACTTGC
Found at i:26535538 original size:9 final size:9
Alignment explanation
Indices: 26535524--26535557 Score: 68
Period size: 9 Copynumber: 3.8 Consensus size: 9
26535514 ATGAACCTGC
26535524 CGCCGCCGT
1 CGCCGCCGT
26535533 CGCCGCCGT
1 CGCCGCCGT
26535542 CGCCGCCGT
1 CGCCGCCGT
26535551 CGCCGCC
1 CGCCGCC
26535558 TGAGCTCTGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 25 1.00
ACGTcount: A:0.00, C:0.59, G:0.32, T:0.09
Consensus pattern (9 bp):
CGCCGCCGT
Found at i:26542282 original size:21 final size:21
Alignment explanation
Indices: 26542252--26542293 Score: 75
Period size: 21 Copynumber: 2.0 Consensus size: 21
26542242 ATAATATTCC
*
26542252 CCTACCCGATGTTTTGCGCCT
1 CCTACACGATGTTTTGCGCCT
26542273 CCTACACGATGTTTTGCGCCT
1 CCTACACGATGTTTTGCGCCT
26542294 TTATTCAAGC
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.12, C:0.36, G:0.19, T:0.33
Consensus pattern (21 bp):
CCTACACGATGTTTTGCGCCT
Found at i:26545858 original size:33 final size:31
Alignment explanation
Indices: 26545821--26545915 Score: 112
Period size: 33 Copynumber: 3.2 Consensus size: 31
26545811 ACATATTTTT
26545821 TTATTGTATTATTATTAAATAGTATAAGTATTA
1 TTATTGTATTATTATTAAA-A-TATAAGTATTA
*
26545854 TTATTGTATGATTATT-AAATAT---TATTA
1 TTATTGTATTATTATTAAAATATAAGTATTA
26545881 TTA-T-TATTATTATTAAAGATATAAGTATTA
1 TTATTGTATTATTATTAAA-ATATAAGTATTA
26545911 TTATT
1 TTATT
26545916 ATTCAACATA
Statistics
Matches: 54, Mismatches: 2, Indels: 14
0.77 0.03 0.20
Matches are distributed among these distances:
25 9 0.17
26 3 0.06
27 12 0.22
30 11 0.20
31 2 0.04
32 2 0.04
33 15 0.28
ACGTcount: A:0.39, C:0.00, G:0.07, T:0.54
Consensus pattern (31 bp):
TTATTGTATTATTATTAAAATATAAGTATTA
Found at i:26545915 original size:3 final size:3
Alignment explanation
Indices: 26545849--26545895 Score: 51
Period size: 3 Copynumber: 15.7 Consensus size: 3
26545839 ATAGTATAAG
* * *
26545849 TAT TAT TAT T-G TAT GAT TAT TAAA TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT T-AT TAT TAT TAT TAT TAT TAT TAT
26545894 TA
1 TA
26545896 AAGATATAAG
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
2 1 0.03
3 33 0.92
4 2 0.06
ACGTcount: A:0.36, C:0.00, G:0.04, T:0.60
Consensus pattern (3 bp):
TAT
Found at i:26550895 original size:12 final size:13
Alignment explanation
Indices: 26550859--26550896 Score: 51
Period size: 13 Copynumber: 3.0 Consensus size: 13
26550849 TACTTTTATG
*
26550859 TCAATATAAAAAT
1 TCAATATAAATAT
*
26550872 TCAATGTAAATAT
1 TCAATATAAATAT
26550885 TCAA-ATAAATAT
1 TCAATATAAATAT
26550897 ATTAATATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
12 7 0.32
13 15 0.68
ACGTcount: A:0.55, C:0.08, G:0.03, T:0.34
Consensus pattern (13 bp):
TCAATATAAATAT
Found at i:26553529 original size:37 final size:37
Alignment explanation
Indices: 26553488--26553564 Score: 145
Period size: 37 Copynumber: 2.1 Consensus size: 37
26553478 ATTAGCTTAA
26553488 CTTAAAATTTTCATTTCAAATCAAACTGACAAAGCAT
1 CTTAAAATTTTCATTTCAAATCAAACTGACAAAGCAT
*
26553525 CTTAAAATTTTCATTTCAAATCGAACTGACAAAGCAT
1 CTTAAAATTTTCATTTCAAATCAAACTGACAAAGCAT
26553562 CTT
1 CTT
26553565 GAAGACTATT
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
37 39 1.00
ACGTcount: A:0.40, C:0.19, G:0.06, T:0.34
Consensus pattern (37 bp):
CTTAAAATTTTCATTTCAAATCAAACTGACAAAGCAT
Found at i:26558174 original size:16 final size:16
Alignment explanation
Indices: 26558153--26558186 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 16
26558143 ATATATAGTT
26558153 AATTAATT-AAAATATG
1 AATTAATTGAAAAT-TG
26558169 AATTAATTGAAAATTG
1 AATTAATTGAAAATTG
26558185 AA
1 AA
26558187 AAGTGAATTA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 12 0.71
17 5 0.29
ACGTcount: A:0.56, C:0.00, G:0.09, T:0.35
Consensus pattern (16 bp):
AATTAATTGAAAATTG
Found at i:26558416 original size:47 final size:47
Alignment explanation
Indices: 26558359--26558462 Score: 156
Period size: 47 Copynumber: 2.2 Consensus size: 47
26558349 CTGTTGCCGT
26558359 TACTGTTACTGTT-TCGAATTTGTTCCAATGAGGTACTCTATGTACCG
1 TACTGTTACTGTTCT-GAATTTGTTCCAATGAGGTACTCTATGTACCG
* * *
26558406 TACTGTTACTGTTCTGGATTTGTTCCGATGAGGTACTCTGTGTACCG
1 TACTGTTACTGTTCTGAATTTGTTCCAATGAGGTACTCTATGTACCG
*
26558453 TACTGCTACT
1 TACTGTTACT
26558463 ATTATTGTTA
Statistics
Matches: 52, Mismatches: 4, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
47 51 0.98
48 1 0.02
ACGTcount: A:0.18, C:0.20, G:0.21, T:0.40
Consensus pattern (47 bp):
TACTGTTACTGTTCTGAATTTGTTCCAATGAGGTACTCTATGTACCG
Found at i:26558653 original size:18 final size:18
Alignment explanation
Indices: 26558590--26558660 Score: 56
Period size: 18 Copynumber: 3.9 Consensus size: 18
26558580 TGGAAAGATC
26558590 GACTGTTACTGAATAATTT
1 GACTGTTACTGAATAA-TT
* *
26558609 AATTGTTACT--ATATATCT
1 GACTGTTACTGAATA-AT-T
* *
26558627 GATTTTTACTGAATAATT
1 GACTGTTACTGAATAATT
*
26558645 GACTGTTACTGGATAA
1 GACTGTTACTGAATAA
26558661 CCAATCAATT
Statistics
Matches: 41, Mismatches: 7, Indels: 9
0.72 0.12 0.16
Matches are distributed among these distances:
17 4 0.10
18 24 0.59
19 10 0.24
20 3 0.07
ACGTcount: A:0.32, C:0.10, G:0.14, T:0.44
Consensus pattern (18 bp):
GACTGTTACTGAATAATT
Found at i:26558701 original size:18 final size:18
Alignment explanation
Indices: 26558677--26558740 Score: 74
Period size: 18 Copynumber: 3.6 Consensus size: 18
26558667 AATTGATTGA
26558677 TACTGAATAACTGATTAT
1 TACTGAATAACTGATTAT
* * *
26558695 TATTGAATAATTGATTGT
1 TACTGAATAACTGATTAT
* *
26558713 TACCGAATAACTGACTAT
1 TACTGAATAACTGATTAT
*
26558731 TACTAAATAA
1 TACTGAATAA
26558741 ATAATTGTTC
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
18 36 1.00
ACGTcount: A:0.41, C:0.11, G:0.11, T:0.38
Consensus pattern (18 bp):
TACTGAATAACTGATTAT
Found at i:26558740 original size:36 final size:36
Alignment explanation
Indices: 26558667--26558749 Score: 103
Period size: 36 Copynumber: 2.3 Consensus size: 36
26558657 ATAACCAATC
* * * * *
26558667 AATTGATTGATACTGAATAACTGATTATTATTGAAT
1 AATTGATTGTTACCGAATAACTGACTATTACTAAAT
26558703 AATTGATTGTTACCGAATAACTGACTATTACTAAAT
1 AATTGATTGTTACCGAATAACTGACTATTACTAAAT
* *
26558739 AAATAATTGTT
1 AATTGATTGTT
26558750 CTGATTGACT
Statistics
Matches: 40, Mismatches: 7, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.40, C:0.08, G:0.12, T:0.40
Consensus pattern (36 bp):
AATTGATTGTTACCGAATAACTGACTATTACTAAAT
Found at i:26569312 original size:43 final size:42
Alignment explanation
Indices: 26569265--26569428 Score: 149
Period size: 44 Copynumber: 3.9 Consensus size: 42
26569255 AACATATACA
* *
26569265 ATGCCAACGTCCCAAACGTGGTCTTACATGTAATCAAACATCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAA-ATCG
*
26569308 ATGCC-ACTGTCCCAGACAG-GGTCTTACACGAAATC-AAATACG
1 ATGCCAAC-GTCCCAGAC-GTGGTCTTACACGTAATCAAAAT-CG
* * * * * *
26569350 ATACCGATGTCCCAGACATGGTCGTACACGTAAAAT-AGAAGTCG
1 ATGCCAACGTCCCAGACGTGGTCTTACACGT--AATCA-AAATCG
26569394 ATGCCAACGTCCCAGACGTGGTCTTACACG-AATCA
1 ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCA
26569429 CATAATGAAA
Statistics
Matches: 97, Mismatches: 14, Indels: 21
0.73 0.11 0.16
Matches are distributed among these distances:
41 5 0.05
42 30 0.31
43 28 0.29
44 31 0.32
45 3 0.03
ACGTcount: A:0.32, C:0.27, G:0.20, T:0.21
Consensus pattern (42 bp):
ATGCCAACGTCCCAGACGTGGTCTTACACGTAATCAAAATCG
Found at i:26581671 original size:62 final size:60
Alignment explanation
Indices: 26581575--26581739 Score: 225
Period size: 54 Copynumber: 2.8 Consensus size: 60
26581565 CATGGGTCCT
* *
26581575 TTGCCTTATAGTAACTCATCAATGCCATGTCTTGGCATGGTCTTACATGGGACCATGATTTCC
1 TTGCCTTATAG-AACTTATCAATGCCATGCCTTGGCATGGTCTTACAT-GGA-CATGATTTCC
* *
26581638 TTGCCTTATAGAACTTATCAGTGCCATGCCTTGGCATGG-C---C-T-TACATGATTTCC
1 TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGGACATGATTTCC
26581692 TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
1 TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
26581740 ATATCCTTAT
Statistics
Matches: 91, Mismatches: 5, Indels: 15
0.82 0.05 0.14
Matches are distributed among these distances:
54 48 0.53
55 2 0.02
57 1 0.01
58 2 0.02
59 1 0.01
61 1 0.01
62 25 0.27
63 11 0.12
ACGTcount: A:0.22, C:0.24, G:0.19, T:0.35
Consensus pattern (60 bp):
TTGCCTTATAGAACTTATCAATGCCATGCCTTGGCATGGTCTTACATGGACATGATTTCC
Found at i:26581738 original size:116 final size:116
Alignment explanation
Indices: 26581519--26581739 Score: 338
Period size: 116 Copynumber: 1.9 Consensus size: 116
26581509 TTACGTGGTA
*
26581519 TCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGTCTTACATGGGTCCTTTGCCTTAT
1 TCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGCCTTACATGGGTCCTTTGCCTTAT
*
26581584 AGTAACTCATCAATGCCATGTCTTGGCATGGTCTTACATGGGACCATGATT
66 AGTAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGACCATGATT
* * * **
26581635 TCCTTGCCTTATAGAACTTATCAGTGCCATGCCTTGGCATGGCCTTACATGATTTCC-TTGCCTT
1 TCCTTGCCTTAT-GAACTCACCAATGCCATGCCTTGGCATGGCCTTACATG-GGTCCTTTGCCTT
*
26581699 ATAG-AACTTATCAATGCCATGCCTTGGCATGGTCTTACATG
64 ATAGTAACTCATCAATGCCATGCCTTGGCATGGTCTTACATG
26581740 ATATCCTTAT
Statistics
Matches: 95, Mismatches: 8, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
116 47 0.49
117 45 0.47
118 3 0.03
ACGTcount: A:0.21, C:0.26, G:0.19, T:0.34
Consensus pattern (116 bp):
TCCTTGCCTTATGAACTCACCAATGCCATGCCTTGGCATGGCCTTACATGGGTCCTTTGCCTTAT
AGTAACTCATCAATGCCATGCCTTGGCATGGTCTTACATGGGACCATGATT
Found at i:26591015 original size:27 final size:27
Alignment explanation
Indices: 26590942--26591018 Score: 127
Period size: 27 Copynumber: 2.9 Consensus size: 27
26590932 CACACCTGAA
*
26590942 CCCTTATGTGATAAAATGACGATATTG
1 CCCTTATGTGATAAAATGATGATATTG
**
26590969 CCCTTAAATGATAAAATGATGATATTG
1 CCCTTATGTGATAAAATGATGATATTG
26590996 CCCTTATGTGATAAAATGATGAT
1 CCCTTATGTGATAAAATGATGAT
26591019 TTTACCCCTA
Statistics
Matches: 45, Mismatches: 5, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
27 45 1.00
ACGTcount: A:0.36, C:0.13, G:0.17, T:0.34
Consensus pattern (27 bp):
CCCTTATGTGATAAAATGATGATATTG
Found at i:26591051 original size:27 final size:27
Alignment explanation
Indices: 26591021--26591182 Score: 200
Period size: 27 Copynumber: 5.9 Consensus size: 27
26591011 ATGATGATTT
*
26591021 TACCCCTATAGGGCAAAATGACTATAA
1 TACCCCTATAGGGTAAAATGACTATAA
*
26591048 TA-CCCTCATAGGGTAAAATGACTGTAA
1 TACCCCT-ATAGGGTAAAATGACTATAA
* *
26591075 TACCCCTGTAGGGTAAAATGACTGTAA
1 TACCCCTATAGGGTAAAATGACTATAA
*
26591102 TACCCCTGTATGTAGGGTAAAATGACTCTAA
1 TACCCC--TA--TAGGGTAAAATGACTATAA
* *
26591133 TACTCCTGTAGGGTAAAATGACTATAA
1 TACCCCTATAGGGTAAAATGACTATAA
*
26591160 TACCCCTATAAGGTAAAATGACT
1 TACCCCTATAGGGTAAAATGACT
26591183 GATTTGCTCT
Statistics
Matches: 118, Mismatches: 11, Indels: 12
0.84 0.08 0.09
Matches are distributed among these distances:
26 4 0.03
27 85 0.72
28 4 0.03
29 2 0.02
31 23 0.19
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.27
Consensus pattern (27 bp):
TACCCCTATAGGGTAAAATGACTATAA
Found at i:26591141 original size:58 final size:58
Alignment explanation
Indices: 26591021--26591166 Score: 210
Period size: 58 Copynumber: 2.6 Consensus size: 58
26591011 ATGATGATTT
* * * *
26591021 TACCCCTATAGGGCAAAATGACTATAATA-CCCT-CA--TAGGGTAAAATGACTGTAA
1 TACCCCTGTAGGGTAAAATGACTATAATACCCCTGTATGTAGGGTAAAATGACTCTAA
*
26591075 TACCCCTGTAGGGTAAAATGACTGTAATACCCCTGTATGTAGGGTAAAATGACTCTAA
1 TACCCCTGTAGGGTAAAATGACTATAATACCCCTGTATGTAGGGTAAAATGACTCTAA
*
26591133 TACTCCTGTAGGGTAAAATGACTATAATACCCCT
1 TACCCCTGTAGGGTAAAATGACTATAATACCCCT
26591167 ATAAGGTAAA
Statistics
Matches: 81, Mismatches: 7, Indels: 4
0.88 0.08 0.04
Matches are distributed among these distances:
54 26 0.32
55 4 0.05
56 1 0.01
58 50 0.62
ACGTcount: A:0.35, C:0.21, G:0.18, T:0.27
Consensus pattern (58 bp):
TACCCCTGTAGGGTAAAATGACTATAATACCCCTGTATGTAGGGTAAAATGACTCTAA
Found at i:26591604 original size:18 final size:18
Alignment explanation
Indices: 26591577--26591624 Score: 60
Period size: 18 Copynumber: 2.7 Consensus size: 18
26591567 TATTTGCATT
*
26591577 CTGCACTGATTATTATTA
1 CTGCACTGATTATGATTA
* * *
26591595 CTGCATTGATCATGGTTA
1 CTGCACTGATTATGATTA
26591613 CTGCACTGATTA
1 CTGCACTGATTA
26591625 CTGTCACTGC
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (18 bp):
CTGCACTGATTATGATTA
Found at i:26594759 original size:16 final size:18
Alignment explanation
Indices: 26594720--26594763 Score: 56
Period size: 16 Copynumber: 2.6 Consensus size: 18
26594710 CTTGGAGTTC
26594720 AAAATTTCAGATTTAGGG
1 AAAATTTCAGATTTAGGG
**
26594738 CTAATTT-A-ATTTAGGG
1 AAAATTTCAGATTTAGGG
26594754 AAAATTTCAG
1 AAAATTTCAG
26594764 CAATATAGAA
Statistics
Matches: 20, Mismatches: 4, Indels: 4
0.71 0.14 0.14
Matches are distributed among these distances:
16 13 0.65
17 2 0.10
18 5 0.25
ACGTcount: A:0.39, C:0.07, G:0.18, T:0.36
Consensus pattern (18 bp):
AAAATTTCAGATTTAGGG
Found at i:26605180 original size:10 final size:10
Alignment explanation
Indices: 26605165--26605192 Score: 56
Period size: 10 Copynumber: 2.8 Consensus size: 10
26605155 AGGACCTATG
26605165 TGAAAATGTT
1 TGAAAATGTT
26605175 TGAAAATGTT
1 TGAAAATGTT
26605185 TGAAAATG
1 TGAAAATG
26605193 CTATAGGCTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 18 1.00
ACGTcount: A:0.43, C:0.00, G:0.21, T:0.36
Consensus pattern (10 bp):
TGAAAATGTT
Found at i:26605343 original size:26 final size:26
Alignment explanation
Indices: 26605307--26605374 Score: 118
Period size: 26 Copynumber: 2.6 Consensus size: 26
26605297 TAGACAATAT
*
26605307 GTAAATATTCCATGATAATGGGTTAG
1 GTAAATGTTCCATGATAATGGGTTAG
26605333 GTAAATGTTCCATGATAATGGGTTAG
1 GTAAATGTTCCATGATAATGGGTTAG
*
26605359 TTAAATGTTCCATGAT
1 GTAAATGTTCCATGAT
26605375 GGGCATTTCA
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 40 1.00
ACGTcount: A:0.32, C:0.09, G:0.22, T:0.37
Consensus pattern (26 bp):
GTAAATGTTCCATGATAATGGGTTAG
Found at i:26607014 original size:27 final size:26
Alignment explanation
Indices: 26606973--26607112 Score: 163
Period size: 27 Copynumber: 5.2 Consensus size: 26
26606963 GGAAGCGTCT
*
26606973 TGGTGGCTATGCCACAATTATCTGATC
1 TGGTGGCTCTGCCAC-ATTATCTGATC
* * *
26607000 TGGTGGCTCTTCCACATATATCTGTTT
1 TGGTGGCTCTGCCACAT-TATCTGATC
*
26607027 TGGTGGCTATGCCACGATTATCTGATC
1 TGGTGGCTCTGCCAC-ATTATCTGATC
* *
26607054 TGGTGGCTCTACCACATATATCTGTTC
1 TGGTGGCTCTGCCACAT-TATCTGATC
*
26607081 TGGTGGCTCTGCCACAATATCTGTATC
1 TGGTGGCTCTGCCACATTATCTG-ATC
26607108 TGGTG
1 TGGTG
26607113 ACTTCATCAC
Statistics
Matches: 95, Mismatches: 14, Indels: 8
0.81 0.12 0.07
Matches are distributed among these distances:
26 10 0.11
27 83 0.87
28 2 0.02
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.36
Consensus pattern (26 bp):
TGGTGGCTCTGCCACATTATCTGATC
Found at i:26607054 original size:54 final size:53
Alignment explanation
Indices: 26606972--26607112 Score: 219
Period size: 54 Copynumber: 2.6 Consensus size: 53
26606962 AGGAAGCGTC
*
26606972 TTGGTGGCTATGCCACAATTATCTGATCTGGTGGCTCTTCCACATATATCTGTT
1 TTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
26607026 TTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
1 TTGGTGGCTATGCCAC-ATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
* * *
26607080 CTGGTGGCTCTGCCACAATATCTGTATCTGGTG
1 TTGGTGGCTATGCCACATTATCTG-ATCTGGTG
26607113 ACTTCATCAC
Statistics
Matches: 81, Mismatches: 5, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
53 7 0.09
54 74 0.91
ACGTcount: A:0.18, C:0.23, G:0.23, T:0.37
Consensus pattern (53 bp):
TTGGTGGCTATGCCACATTATCTGATCTGGTGGCTCTACCACATATATCTGTT
Found at i:26612447 original size:26 final size:26
Alignment explanation
Indices: 26612410--26612491 Score: 137
Period size: 26 Copynumber: 3.2 Consensus size: 26
26612400 TGATAAAAAT
* *
26612410 TGATAATAGGTTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26612436 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
26612462 TGATAATGGGTTAGTTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
26612488 TGAT
1 TGAT
26612492 GGGCATTTCA
Statistics
Matches: 53, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
26 53 1.00
ACGTcount: A:0.33, C:0.07, G:0.23, T:0.37
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:26614181 original size:27 final size:27
Alignment explanation
Indices: 26614086--26614190 Score: 126
Period size: 27 Copynumber: 3.9 Consensus size: 27
26614076 AGGAAGCGTC
* *
26614086 CTGGTGGCTATGCCACAATTATCTG-AT
1 CTGGTGGCTCTGTCACAA-TATCTGTAT
*
26614113 CTGGTGGCTCTGCCACATATATCTGT-T
1 CTGGTGGCTCTGTCACA-ATATCTGTAT
26614140 CTGGTGGCTCTGTCACAATATCTGTAT
1 CTGGTGGCTCTGTCACAATATCTGTAT
*
26614167 CTGGTGACT-TCGTCACAATATCTG
1 CTGGTGGCTCT-GTCACAATATCTG
26614191 GCAGCCTCGC
Statistics
Matches: 71, Mismatches: 3, Indels: 8
0.87 0.04 0.10
Matches are distributed among these distances:
26 9 0.13
27 61 0.86
28 1 0.01
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (27 bp):
CTGGTGGCTCTGTCACAATATCTGTAT
Found at i:26615634 original size:26 final size:24
Alignment explanation
Indices: 26615586--26615636 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 24
26615576 GCAACTATAA
* *
26615586 AAAAAACTTATTTTAATATAAAAT
1 AAAAAACTTATTTTAAGACAAAAT
26615610 AAAAAACTTACTTTTCAAGACAAAAT
1 AAAAAACTTA-TTTT-AAGACAAAAT
26615636 A
1 A
26615637 GCGTAAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
24 10 0.43
25 4 0.17
26 9 0.39
ACGTcount: A:0.57, C:0.10, G:0.02, T:0.31
Consensus pattern (24 bp):
AAAAAACTTATTTTAAGACAAAAT
Found at i:26620007 original size:21 final size:20
Alignment explanation
Indices: 26619982--26620021 Score: 53
Period size: 20 Copynumber: 1.9 Consensus size: 20
26619972 GAAATGTAAA
*
26619982 ACTTATAAACTAGCTTAAAAG
1 ACTTA-AAAATAGCTTAAAAG
*
26620003 ACTTAAAAATATCTTAAAA
1 ACTTAAAAATAGCTTAAAA
26620022 TTCAAATTAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
20 12 0.71
21 5 0.29
ACGTcount: A:0.53, C:0.12, G:0.05, T:0.30
Consensus pattern (20 bp):
ACTTAAAAATAGCTTAAAAG
Found at i:26620936 original size:29 final size:29
Alignment explanation
Indices: 26620902--26620969 Score: 91
Period size: 29 Copynumber: 2.3 Consensus size: 29
26620892 CGACACAGCT
* * *
26620902 TACCACATGGTTGTGTGACCTACACGGTC
1 TACCACATGGTCGTGTAACCTACACGATC
* *
26620931 TACCACACGGTCGTGTAACTTACACGATC
1 TACCACATGGTCGTGTAACCTACACGATC
26620960 TACCACATGG
1 TACCACATGG
26620970 CCTAGCACAT
Statistics
Matches: 33, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 33 1.00
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (29 bp):
TACCACATGGTCGTGTAACCTACACGATC
Found at i:26621007 original size:41 final size:41
Alignment explanation
Indices: 26620952--26621071 Score: 152
Period size: 41 Copynumber: 2.9 Consensus size: 41
26620942 CGTGTAACTT
* *
26620952 ACACGATCTACCACATGGCCTAGCACATGATCGTGTGACCA
1 ACACGGTCTGCCACATGGCCTAGCACATGATCGTGTGACCA
* * *
26620993 ACACGGTCTGCCACATGGCCTACCACACGATTGTGTGACCA
1 ACACGGTCTGCCACATGGCCTAGCACATGATCGTGTGACCA
* * *
26621034 ACATGGTTTGCCACATGGCC-AGCTACATGGTCGTGTGA
1 ACACGGTCTGCCACATGGCCTAGC-ACATGATCGTGTGA
26621072 TGCAGTTTAC
Statistics
Matches: 67, Mismatches: 11, Indels: 2
0.84 0.14 0.03
Matches are distributed among these distances:
40 2 0.03
41 65 0.97
ACGTcount: A:0.25, C:0.30, G:0.23, T:0.22
Consensus pattern (41 bp):
ACACGGTCTGCCACATGGCCTAGCACATGATCGTGTGACCA
Found at i:26629363 original size:17 final size:17
Alignment explanation
Indices: 26629343--26629388 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 17
26629333 TAAAAAAATA
26629343 AAATTAATTAGGAGTTT
1 AAATTAATTAGGAGTTT
* *
26629360 AAATTTA-TA--TGTTT
1 AAATTAATTAGGAGTTT
26629374 AAATTAATTAGGAGT
1 AAATTAATTAGGAGT
26629389 CTATTTTCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 6
0.69 0.12 0.19
Matches are distributed among these distances:
14 10 0.45
15 2 0.09
16 2 0.09
17 8 0.36
ACGTcount: A:0.41, C:0.00, G:0.15, T:0.43
Consensus pattern (17 bp):
AAATTAATTAGGAGTTT
Found at i:26637300 original size:188 final size:188
Alignment explanation
Indices: 26637061--26637887 Score: 1588
Period size: 188 Copynumber: 4.4 Consensus size: 188
26637051 AGACGAGGGC
** *
26637061 TAGTGTAAGACATGTCAAGGACATGCATTAG--C-CATATTATGAGAGCCAGTGTAAGACCATGT
1 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
26637123 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
66 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
26637188 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
131 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
26637246 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
1 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
26637311 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
66 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
26637376 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
131 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
26637434 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
1 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
26637499 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
66 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
26637564 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
131 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
26637622 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
1 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
26637687 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
66 CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
26637752 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
131 TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
*
26637810 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATCT
1 TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
*
26637875 CTGGGACATGGCA
66 CTGGGACAGGGCA
26637888 ACAGCAATAT
Statistics
Matches: 634, Mismatches: 5, Indels: 3
0.99 0.01 0.00
Matches are distributed among these distances:
185 28 0.04
187 1 0.00
188 605 0.95
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.20
Consensus pattern (188 bp):
TAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGAGCCAGTGTAAGACCATGT
CTGGGACAGGGCATCGGCACAGAGATGAGTGCCAGAGTAAGACATGTCTGGGACATGCATCGGCC
TCGACAGAGAAAGCCAGTGTAAGACGTGTCAGGGACACGCATCGGCTAAGAGTTGTGT
Found at i:26637768 original size:47 final size:46
Alignment explanation
Indices: 26636966--26637884 Score: 564
Period size: 47 Copynumber: 19.6 Consensus size: 46
26636956 TGATTTGTGC
* * * *
26636966 GCCAGTGTAA-ACATGTTTGGGACATGCTTTGGC-CACATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACA-GATGAGA
* * * *
26637011 GCCAGTGTAAGACCATGTTTGGGACATGGCATCAGCATC-CAGACGAGG
1 GCCAGTGTAAGA-CATGTCTGGGACAT-GCATCGGCA-CACAGATGAGA
* ** ** * *
26637059 GCTAGTGTAAGACATGTCAAGGACATGCATTAGC-CATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACA-GATGAGA
* * *
26637105 GCCAGTGTAAGACCATGTCTGGGACAGGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCACACAGATGAGA
* * *
26637153 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CAC-ACAGATGAGA
* * * * * *
26637200 GCCAGTGTAAGACGTGTCAGGGACACGCATCGGC-TA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACAGATG-AGA
** * * * *
26637244 GTTAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--CACA-GATGAGA
* * *
26637293 GCCAGTGTAAGACCATGTCTGGGACAGGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCACACAGATGAGA
* * *
26637341 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CAC-ACAGATGAGA
* * * * * *
26637388 GCCAGTGTAAGACGTGTCAGGGACACGCATCGGC-TA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACAGATG-AGA
** * * * *
26637432 GTTAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--CACA-GATGAGA
* * *
26637481 GCCAGTGTAAGACCATGTCTGGGACAGGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCACACAGATGAGA
* * *
26637529 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CAC-ACAGATGAGA
* * * * * *
26637576 GCCAGTGTAAGACGTGTCAGGGACACGCATCGGC-TA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACAGATG-AGA
** * * * *
26637620 GTTAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--CACA-GATGAGA
* * *
26637669 GCCAGTGTAAGACCATGTCTGGGACAGGGCATCGGCACAGAGATGAGT
1 GCCAGTGTAAGA-CATGTCTGGGACA-TGCATCGGCACACAGATGAGA
* * *
26637717 GCCAGAGTAAGACATGTCTGGGACATGCATCGGCCTCGACAGA-GAAA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGG-CAC-ACAGATGAGA
* * * * * *
26637764 GCCAGTGTAAGACGTGTCAGGGACACGCATCGGC-TA-AGA-GTTGT
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACAGATG-AGA
** * * * *
26637808 GTTAGTGTAAGACATGTCCGGGACATGCATCAGCACGCATATTATGAGA
1 GCCAGTGTAAGACATGTCTGGGACATGCATCGGCA--CACA-GATGAGA
*
26637857 GCCAGTGTAAGACCATCTCTGGGACATG
1 GCCAGTGTAAGA-CATGTCTGGGACATG
26637885 GCAACAGCAA
Statistics
Matches: 673, Mismatches: 148, Indels: 101
0.73 0.16 0.11
Matches are distributed among these distances:
43 16 0.02
44 117 0.17
45 11 0.02
46 55 0.08
47 224 0.33
48 110 0.16
49 62 0.09
50 54 0.08
51 24 0.04
ACGTcount: A:0.29, C:0.21, G:0.31, T:0.20
Consensus pattern (46 bp):
GCCAGTGTAAGACATGTCTGGGACATGCATCGGCACACAGATGAGA
Found at i:26640918 original size:26 final size:26
Alignment explanation
Indices: 26640889--26640966 Score: 66
Period size: 26 Copynumber: 2.9 Consensus size: 26
26640879 CAACCTTAAC
* *
26640889 CCTATGGGTATATCAGTAATTTTGCT
1 CCTATGGGTATATCAGTAATTTTCCA
* * *
26640915 CCTAGGGGTAAATCTGTAAATTTTCCA
1 CCTATGGGTATATCAGT-AATTTTCCA
* *
26640942 CCTATACAGGTATTTCAGTAATTTT
1 CCTAT--GGGTATATCAGTAATTTT
26640967 ATCAGTTTTA
Statistics
Matches: 39, Mismatches: 10, Indels: 4
0.74 0.19 0.08
Matches are distributed among these distances:
26 14 0.36
27 11 0.28
28 6 0.15
29 8 0.21
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.40
Consensus pattern (26 bp):
CCTATGGGTATATCAGTAATTTTCCA
Found at i:26643888 original size:22 final size:22
Alignment explanation
Indices: 26643862--26643903 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
26643852 CATGTAGTTT
26643862 AACAACATATAAAA-CCAAAACC
1 AACAA-ATATAAAACCCAAAACC
*
26643884 AACAATTATAAAACCCAAAA
1 AACAAATATAAAACCCAAAA
26643904 ACTCCAGAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 7 0.39
22 11 0.61
ACGTcount: A:0.64, C:0.24, G:0.00, T:0.12
Consensus pattern (22 bp):
AACAAATATAAAACCCAAAACC
Found at i:26653983 original size:39 final size:39
Alignment explanation
Indices: 26653940--26654166 Score: 127
Period size: 40 Copynumber: 5.7 Consensus size: 39
26653930 AGAACAAGCA
*
26653940 TTAGCGGCACTTTTTAAAAACACCGCTATATGTAAACCT
1 TTAGCGGCACTTTTTAAAAACGCCGCTATATGTAAACCT
* * * * *
26653979 TTAGCGGCATTTTTTAAGAAACGCTGCTATAGGCACACCT
1 TTAGCGGCACTTTTTAA-AAACGCCGCTATATGTAAACCT
* * * ** *
26654019 TTAGCGACGTCTTTTAAAAAACGCCGCTA-ATGCTCGATCT
1 TTAGCGGC-ACTTTTTAAAAACGCCGCTATATG-TAAACCT
* * ** ** *
26654059 TTAGCGGCGCTTTTTAAAAAATGCTACTA-ATGCTCGATCT
1 TTAGCGGCACTTTTT-AAAAACGCCGCTATATG-TAAACCT
* * *
26654099 TTAGCGGCGCTTTTTTAAAAAACGCCGCTA-ATGCTTAATCT
1 TTAGCGGCAC-TTTTT-AAAAACGCCGCTATATG-TAAACCT
** *
26654140 TTAGCGGCGTTTTTTGAACAACGCCGC
1 TTAGCGGCACTTTTT-AAAAACGCCGC
26654167 AAAAGAATTT
Statistics
Matches: 153, Mismatches: 30, Indels: 9
0.80 0.16 0.05
Matches are distributed among these distances:
39 23 0.15
40 90 0.59
41 40 0.26
ACGTcount: A:0.27, C:0.23, G:0.18, T:0.32
Consensus pattern (39 bp):
TTAGCGGCACTTTTTAAAAACGCCGCTATATGTAAACCT
Found at i:26654114 original size:41 final size:40
Alignment explanation
Indices: 26653977--26654166 Score: 211
Period size: 40 Copynumber: 4.7 Consensus size: 40
26653967 ATATGTAAAC
* * * * * *
26653977 CTTTAGCGGCATTTTTTAAGAAACGCTGCTATAGGCAC-AC
1 CTTTAGCGGCGTTTTTTAAAAAACGCCGCTA-ATGCTCGAT
* *
26654017 CTTTAGCGACGTCTTTTAAAAAACGCCGCTAATGCTCGAT
1 CTTTAGCGGCGTTTTTTAAAAAACGCCGCTAATGCTCGAT
* * **
26654057 CTTTAGCGGCGCTTTTTAAAAAATGCTACTAATGCTCGAT
1 CTTTAGCGGCGTTTTTTAAAAAACGCCGCTAATGCTCGAT
**
26654097 CTTTAGCGGCGCTTTTTTAAAAAACGCCGCTAATGCTTAAT
1 CTTTAGCGGCG-TTTTTTAAAAAACGCCGCTAATGCTCGAT
* *
26654138 CTTTAGCGGCGTTTTTTGAACAACGCCGC
1 CTTTAGCGGCGTTTTTTAAAAAACGCCGC
26654167 AAAAGAATTT
Statistics
Matches: 126, Mismatches: 22, Indels: 4
0.83 0.14 0.03
Matches are distributed among these distances:
39 4 0.03
40 88 0.70
41 34 0.27
ACGTcount: A:0.26, C:0.23, G:0.19, T:0.32
Consensus pattern (40 bp):
CTTTAGCGGCGTTTTTTAAAAAACGCCGCTAATGCTCGAT
Found at i:26654140 original size:81 final size:81
Alignment explanation
Indices: 26653940--26654163 Score: 233
Period size: 80 Copynumber: 2.8 Consensus size: 81
26653930 AGAACAAGCA
* * * * *
26653940 TTAGCGGCAC-TTTTT-AAAAACACCGCTATATG-TAAACCTTTAGCGGCATTTTTTAAGAAACG
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTA-ATGCTAAATCTTTAGCGGCGTTTTTTAAAAAACG
*
26654002 CTGCTATAGGCACACCT
65 CTACTATAGGCACACCT
* * ** * *
26654019 TTAGCGACG-TCTTTTAAAAAACGCCGCTAATGCTCGATCTTTAGCGGCGCTTTTTAAAAAATGC
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAATGCTAAATCTTTAGCGGCGTTTTTTAAAAAACGC
* * *
26654083 TACTA-ATGCTCGATCT
66 TACTATAGGCAC-ACCT
* * *
26654099 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAATGCTTAATCTTTAGCGGCGTTTTTTGAACAACGC
1 TTAGCGGCGCTTTTTTAAAAAACGCCGCTAATGCTAAATCTTTAGCGGCGTTTTTTAAAAAACGC
26654164 CGCAAAAGAA
Statistics
Matches: 117, Mismatches: 23, Indels: 8
0.79 0.16 0.05
Matches are distributed among these distances:
79 18 0.15
80 51 0.44
81 48 0.41
ACGTcount: A:0.28, C:0.22, G:0.18, T:0.32
Consensus pattern (81 bp):
TTAGCGGCGCTTTTTTAAAAAACGCCGCTAATGCTAAATCTTTAGCGGCGTTTTTTAAAAAACGC
TACTATAGGCACACCT
Found at i:26654553 original size:7 final size:7
Alignment explanation
Indices: 26654484--26654604 Score: 68
Period size: 7 Copynumber: 17.0 Consensus size: 7
26654474 GTTTAAAGGT
26654484 GGTTTAAG
1 GGTTT-AG
26654492 GG-TTAG
1 GGTTTAG
*
26654498 GGTTTAA
1 GGTTTAG
*
26654505 TGTTTA-
1 GGTTTAG
26654511 GGTGTTAGG
1 GGT-TTA-G
*
26654520 GGTTAAG
1 GGTTTAG
26654527 GG-TTATG
1 GGTTTA-G
* * *
26654534 AGTTCAA
1 GGTTTAG
26654541 GGTTTAG
1 GGTTTAG
*
26654548 GGTTTAT
1 GGTTTAG
*
26654555 GTTTTAG
1 GGTTTAG
* *
26654562 GATTTAT
1 GGTTTAG
26654569 GGTTTAG
1 GGTTTAG
26654576 GGTTTAG
1 GGTTTAG
*
26654583 GGATTAAG
1 GG-TTTAG
*
26654591 AGTTTAG
1 GGTTTAG
26654598 GGTTTAG
1 GGTTTAG
26654605 ATTAATTAGT
Statistics
Matches: 84, Mismatches: 22, Indels: 15
0.69 0.18 0.12
Matches are distributed among these distances:
6 8 0.10
7 62 0.74
8 11 0.13
9 3 0.04
ACGTcount: A:0.21, C:0.01, G:0.36, T:0.42
Consensus pattern (7 bp):
GGTTTAG
Found at i:26654567 original size:21 final size:21
Alignment explanation
Indices: 26654543--26654604 Score: 70
Period size: 22 Copynumber: 2.9 Consensus size: 21
26654533 GAGTTCAAGG
* *
26654543 TTTAGGGTTTATGTTTTAGGA
1 TTTAGGGTTTAGGGTTTAGGA
*
26654564 TTTATGGTTTAGGGTTTAGGGA
1 TTTAGGGTTTAGGGTTTA-GGA
* *
26654586 TTAAGAGTTTAGGGTTTAG
1 TTTAGGGTTTAGGGTTTAG
26654605 ATTAATTAGT
Statistics
Matches: 34, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 16 0.47
22 18 0.53
ACGTcount: A:0.21, C:0.00, G:0.32, T:0.47
Consensus pattern (21 bp):
TTTAGGGTTTAGGGTTTAGGA
Found at i:26654717 original size:14 final size:14
Alignment explanation
Indices: 26654698--26654742 Score: 63
Period size: 14 Copynumber: 3.2 Consensus size: 14
26654688 TTAATTATCA
*
26654698 TTATAGTTTAGAGT
1 TTATAGTTTAGGGT
26654712 TTATAGTTTAGGGT
1 TTATAGTTTAGGGT
* *
26654726 ATATGGTTTAGGGT
1 TTATAGTTTAGGGT
26654740 TTA
1 TTA
26654743 AAGTGTATGG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 27 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (14 bp):
TTATAGTTTAGGGT
Found at i:26654801 original size:14 final size:14
Alignment explanation
Indices: 26654766--26654803 Score: 58
Period size: 15 Copynumber: 2.6 Consensus size: 14
26654756 ACTATTTTAA
*
26654766 GGTTTACGGATTAT
1 GGTTTAGGGATTAT
26654780 GAGTTTAGGGATTAT
1 G-GTTTAGGGATTAT
26654795 GGTTTAGGG
1 GGTTTAGGG
26654804 GTTGGGGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
14 9 0.41
15 13 0.59
ACGTcount: A:0.21, C:0.03, G:0.37, T:0.39
Consensus pattern (14 bp):
GGTTTAGGGATTAT
Found at i:26654843 original size:21 final size:21
Alignment explanation
Indices: 26654795--26654844 Score: 57
Period size: 21 Copynumber: 2.4 Consensus size: 21
26654785 TAGGGATTAT
26654795 GGTTTAGGGGTTGGGGTTTAA
1 GGTTTAGGGGTTGGGGTTTAA
* *
26654816 GGCTTAGGGGTTATGGG-TTAA
1 GGTTTAGGGGTT-GGGGTTTAA
*
26654837 GTTTTAGG
1 GGTTTAGG
26654845 TTTTTAAGGT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.16, C:0.02, G:0.44, T:0.38
Consensus pattern (21 bp):
GGTTTAGGGGTTGGGGTTTAA
Found at i:26655626 original size:8 final size:8
Alignment explanation
Indices: 26655581--26655653 Score: 53
Period size: 7 Copynumber: 8.9 Consensus size: 8
26655571 TTTATATGAT
26655581 AATTTAAA
1 AATTTAAA
26655589 AATTATAAA
1 AATT-TAAA
26655598 AATCTTCAAAAA
1 AAT-TT---AAA
26655610 AATTT-AA
1 AATTTAAA
26655617 AATTTAAA
1 AATTTAAA
26655625 AA-TTAAA
1 AATTTAAA
*
26655632 AA-TAAAA
1 AATTTAAA
*
26655639 AACTTAAA
1 AATTTAAA
*
26655647 ACTTTAA
1 AATTTAA
26655654 TATTTAATAT
Statistics
Matches: 54, Mismatches: 4, Indels: 14
0.75 0.06 0.19
Matches are distributed among these distances:
7 20 0.37
8 17 0.31
9 8 0.15
10 1 0.02
11 2 0.04
12 6 0.11
ACGTcount: A:0.63, C:0.05, G:0.00, T:0.32
Consensus pattern (8 bp):
AATTTAAA
Found at i:26660422 original size:43 final size:43
Alignment explanation
Indices: 26660314--26660504 Score: 258
Period size: 43 Copynumber: 4.5 Consensus size: 43
26660304 GGGATAGTGG
* * ** * *
26660314 TGACTTTTAGTGGCATTTTTAAGGAAAGCGTCGCTAAAA-CCA
1 TGACCTTTAGCGGCATTTTTGGGGAAAGCGCCGCTAAAAGTCA
* *
26660356 TGACCTTTAGCGGCATTTGTGGGGTAAGCGCCGCTAAAAGTCA
1 TGACCTTTAGCGGCATTTTTGGGGAAAGCGCCGCTAAAAGTCA
* *
26660399 TGACCTTTAGCGGCGTTTTTGGGGAAAGCGCAGCTAAAAGTCA
1 TGACCTTTAGCGGCATTTTTGGGGAAAGCGCCGCTAAAAGTCA
* * *
26660442 TGACCTTTAGCGGCATTTTTTGGGAAAGCGCCACTAAAGGTCA
1 TGACCTTTAGCGGCATTTTTGGGGAAAGCGCCGCTAAAAGTCA
26660485 TGACCTTTAGCGGCATTTTT
1 TGACCTTTAGCGGCATTTTT
26660505 TAAATAAACG
Statistics
Matches: 131, Mismatches: 17, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
42 32 0.24
43 99 0.76
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.29
Consensus pattern (43 bp):
TGACCTTTAGCGGCATTTTTGGGGAAAGCGCCGCTAAAAGTCA
Found at i:26663156 original size:46 final size:46
Alignment explanation
Indices: 26663089--26664052 Score: 1788
Period size: 46 Copynumber: 21.0 Consensus size: 46
26663079 TTATCTTTGA
* * * * * *
26663089 CATGATGTCATAGTGTCTTTCAACTATGGTCTTACTCATTTTC-TGT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACA-TTTCATAT
* ** * *
26663135 CATGTTGCCATGGTATCTTTCAACCATGGTCTTATTCTTTTCATGT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
*
26663181 CACGTTG-CAATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTC-ATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663227 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663273 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663319 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663365 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663411 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663457 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663503 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663549 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663595 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663641 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663687 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663733 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663779 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663825 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663871 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663917 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26663963 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
26664009 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
1 CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCAT
26664053 TTCAGAGAGC
Statistics
Matches: 902, Mismatches: 13, Indels: 6
0.98 0.01 0.01
Matches are distributed among these distances:
45 5 0.01
46 896 0.99
47 1 0.00
ACGTcount: A:0.23, C:0.22, G:0.13, T:0.41
Consensus pattern (46 bp):
CATGTTGTCATGGTATCTTTCAACCATGGTCTTACACATTTCATAT
Found at i:26665911 original size:11 final size:11
Alignment explanation
Indices: 26665895--26665942 Score: 51
Period size: 11 Copynumber: 4.2 Consensus size: 11
26665885 CTTTATATAC
26665895 TAATAAAATAA
1 TAATAAAATAA
*
26665906 TAATAAAATATCT
1 TAATAAAATA--A
* *
26665919 TATTAAAATAT
1 TAATAAAATAA
26665930 TAATAAAATAA
1 TAATAAAATAA
26665941 TA
1 TA
26665943 TTTATCTAAT
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
11 22 0.71
13 9 0.29
ACGTcount: A:0.62, C:0.02, G:0.00, T:0.35
Consensus pattern (11 bp):
TAATAAAATAA
Found at i:26670037 original size:6 final size:6
Alignment explanation
Indices: 26670007--26670131 Score: 60
Period size: 6 Copynumber: 20.3 Consensus size: 6
26669997 AAGAAACATT
* * * *
26670007 ATCAGA A-CTAGA ATCAAA ATGAGA ATCAGA ATCAGA ATTAG- GTGACAGA
1 ATCAGA ATC-AGA ATCAGA ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA
* * * * *
26670056 ATCAGA ATCAGA ATCAAA ATTAG- GTGACAGA ATTAGA ATCAGA ATCAGT
1 ATCAGA ATCAGA ATCAGA ATCAGA AT--CAGA ATCAGA ATCAGA ATCAGA
* *
26670105 ATTAGGTA A-CAGA ATCAAA ATCAGA AT
1 ATCA-G-A ATCAGA ATCAGA ATCAGA AT
26670132 GTGAATGCAA
Statistics
Matches: 86, Mismatches: 22, Indels: 22
0.66 0.17 0.17
Matches are distributed among these distances:
5 5 0.06
6 71 0.83
7 7 0.08
8 3 0.03
ACGTcount: A:0.49, C:0.12, G:0.18, T:0.21
Consensus pattern (6 bp):
ATCAGA
Found at i:26670065 original size:31 final size:31
Alignment explanation
Indices: 26670028--26670131 Score: 163
Period size: 31 Copynumber: 3.4 Consensus size: 31
26670018 AATCAAAATG
26670028 AGAATCAGAATCAGAATTAGGTGACAGAATC
1 AGAATCAGAATCAGAATTAGGTGACAGAATC
* *
26670059 AGAATCAGAATCAAAATTAGGTGACAGAATT
1 AGAATCAGAATCAGAATTAGGTGACAGAATC
* *
26670090 AGAATCAGAATCAGTATTAGGTAACAGAATC
1 AGAATCAGAATCAGAATTAGGTGACAGAATC
*
26670121 AAAATCAGAAT
1 AGAATCAGAAT
26670132 GTGAATGCAA
Statistics
Matches: 66, Mismatches: 7, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 66 1.00
ACGTcount: A:0.48, C:0.12, G:0.19, T:0.21
Consensus pattern (31 bp):
AGAATCAGAATCAGAATTAGGTGACAGAATC
Found at i:26670298 original size:27 final size:26
Alignment explanation
Indices: 26670250--26670309 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
26670240 GCGAGGCTAC
*
26670250 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
26670277 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
26670303 CAGATAT
1 CAGATAT
26670310 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:26670358 original size:71 final size:67
Alignment explanation
Indices: 26670277--26670418 Score: 176
Period size: 67 Copynumber: 2.1 Consensus size: 67
26670267 TCACCAGATA
* * * * *
26670277 CAGATATTGTGGCTAGGCCACCAGAACAGATATATATATGTGGCGAAGCCACCAGATTGCAGCGA
1 CAGATATTGTGACGAAGCCACCAGAAC--A-A-ATATATGTGGCGAAGCCACCAGATTACAGCAA
26670342 GGCTAC
62 GGCTAC
* *
26670348 CAGATATTGTGACGAAGTCACCAGAACAAATATATGTGGCGAGGCCACCAGATTACAGCAAGGCT
1 CAGATATTGTGACGAAGCCACCAGAACAAATATATGTGGCGAAGCCACCAGATTACAGCAAGGCT
*
26670413 GC
66 AC
26670415 CAGA
1 CAGA
26670419 ACGCTTCCTC
Statistics
Matches: 63, Mismatches: 8, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
67 38 0.60
68 1 0.02
69 1 0.02
71 23 0.37
ACGTcount: A:0.33, C:0.23, G:0.26, T:0.18
Consensus pattern (67 bp):
CAGATATTGTGACGAAGCCACCAGAACAAATATATGTGGCGAAGCCACCAGATTACAGCAAGGCT
AC
Found at i:26670665 original size:27 final size:27
Alignment explanation
Indices: 26670635--26671017 Score: 462
Period size: 27 Copynumber: 14.2 Consensus size: 27
26670625 AACACCGTAG
* * * *
26670635 GGGTAAAATGGTAATTTTATAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
26670662 GGGTAAAA-CGATAATTCTATAAATCGA
1 GGGTAAAATAG-TAATTCTGTAAATCGA
* *
26670689 GGGTAAAATAGTAATTTTGTAAATCAA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
26670716 GGGTAAAACAGTAATTTTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
26670743 GGGTAAAATAATAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
26670770 GGGTAAAACAATAATTCTGTCAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * * *
26670797 GGGTAAAACAGTAATTTTGCAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* *
26670824 GGGTAGAATAATAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
*
26670851 GGGTAAAATAGTAATTCTGTCAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
** *
26670878 GGGTAAAACGGTAATTCTATAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
26670905 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * * *
26670932 GCGTAAAATTGTAATTTTGTAAATTGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
26670959 GGGTAAAATAGTAATTCTGTAAATCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
* * *
26670986 GGGTAAAACAGTAATTTTGTAATTCGA
1 GGGTAAAATAGTAATTCTGTAAATCGA
26671013 GGGTA
1 GGGTA
26671018 CTTTGATAAT
Statistics
Matches: 306, Mismatches: 48, Indels: 4
0.85 0.13 0.01
Matches are distributed among these distances:
26 1 0.00
27 304 0.99
28 1 0.00
ACGTcount: A:0.41, C:0.08, G:0.21, T:0.31
Consensus pattern (27 bp):
GGGTAAAATAGTAATTCTGTAAATCGA
Found at i:26671100 original size:27 final size:27
Alignment explanation
Indices: 26671024--26671142 Score: 100
Period size: 27 Copynumber: 4.4 Consensus size: 27
26671014 GGTACTTTGA
* * *
26671024 TAATTTTACAAGTCAAAGG-TATTTCAG
1 TAATTTTACAAATC-GAGGATATTTCGG
* *
26671051 TAATTTTACAAA-CTAAGAGTATTTCGG
1 TAATTTTACAAATCGAGGA-TATTTCGG
*
26671078 TAATTTTACAAATCGAGGATATTTGGG
1 TAATTTTACAAATCGAGGATATTTCGG
* * * *
26671105 TAATTTTATAAACCGGGGGTACTTT-GG
1 TAATTTTACAAATCGAGGATA-TTTCGG
26671132 TAATTTTACAA
1 TAATTTTACAA
26671143 CTGGGGGTAT
Statistics
Matches: 76, Mismatches: 12, Indels: 8
0.79 0.12 0.08
Matches are distributed among these distances:
25 2 0.03
26 1 0.01
27 66 0.87
28 7 0.09
ACGTcount: A:0.34, C:0.10, G:0.18, T:0.38
Consensus pattern (27 bp):
TAATTTTACAAATCGAGGATATTTCGG
Found at i:26671134 original size:54 final size:54
Alignment explanation
Indices: 26671012--26671142 Score: 140
Period size: 54 Copynumber: 2.4 Consensus size: 54
26671002 TTGTAATTCG
* * *
26671012 AGGGTACTTTGATAATTTTACAAGTCAAAGGTATTTCAGTAATTTTACAAACTA
1 AGGGTACTTTGGTAATTTTACAAATCAAAGGTATTTCAGTAATTTTACAAACCA
* * ** * *
26671066 AGAGTA-TTTCGGTAATTTTACAAATC-GAGGATATTTGGGTAATTTTATAAACCG
1 AGGGTACTTT-GGTAATTTTACAAATCAAAGG-TATTTCAGTAATTTTACAAACCA
*
26671120 GGGGTACTTTGGTAATTTTACAA
1 AGGGTACTTTGGTAATTTTACAA
26671143 CTGGGGGTAT
Statistics
Matches: 63, Mismatches: 11, Indels: 6
0.79 0.14 0.08
Matches are distributed among these distances:
53 6 0.10
54 54 0.86
55 3 0.05
ACGTcount: A:0.34, C:0.10, G:0.19, T:0.37
Consensus pattern (54 bp):
AGGGTACTTTGGTAATTTTACAAATCAAAGGTATTTCAGTAATTTTACAAACCA
Found at i:26671160 original size:26 final size:26
Alignment explanation
Indices: 26671041--26671163 Score: 95
Period size: 27 Copynumber: 4.6 Consensus size: 26
26671031 ACAAGTCAAA
* *
26671041 GGTATTTCAGTAATTTTACAAACTAAG
1 GGTATTTCGGTAATTTTAC-AACTGAG
* *
26671068 AGTATTTCGGTAATTTTACAAATCGAG
1 GGTATTTCGGTAATTTTACAACT-GAG
* * * * *
26671095 GATATTTGGGTAATTTTATAAACCGGG
1 GGTATTTCGGTAATTTTA-CAACTGAG
*
26671122 GGTACTTT-GGTAATTTTACAACTGGG
1 GGTA-TTTCGGTAATTTTACAACTGAG
**
26671148 GGTATTTTAGTAATTT
1 GGTATTTCGGTAATTT
26671164 AGTAAACTAA
Statistics
Matches: 77, Mismatches: 15, Indels: 9
0.76 0.15 0.09
Matches are distributed among these distances:
25 3 0.04
26 20 0.26
27 49 0.64
28 5 0.06
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.40
Consensus pattern (26 bp):
GGTATTTCGGTAATTTTACAACTGAG
Found at i:26671171 original size:27 final size:26
Alignment explanation
Indices: 26671104--26671171 Score: 75
Period size: 26 Copynumber: 2.5 Consensus size: 26
26671094 GGATATTTGG
* *
26671104 GTAATTTTATAAACCGGGGGTACTTTG
1 GTAA-TTTATAAACTGGGGGTACTTTA
*
26671131 GTAATTT-TACAACTGGGGGTATTTTA
1 GTAATTTATA-AACTGGGGGTACTTTA
26671157 GTAATTTAGTAAACT
1 GTAATTTA-TAAACT
26671172 AAAGTATTCT
Statistics
Matches: 35, Mismatches: 3, Indels: 6
0.80 0.07 0.14
Matches are distributed among these distances:
25 2 0.06
26 23 0.66
27 8 0.23
28 2 0.06
ACGTcount: A:0.29, C:0.09, G:0.22, T:0.40
Consensus pattern (26 bp):
GTAATTTATAAACTGGGGGTACTTTA
Found at i:26677990 original size:27 final size:27
Alignment explanation
Indices: 26677959--26678136 Score: 160
Period size: 27 Copynumber: 6.6 Consensus size: 27
26677949 TAAATTGTAC
* * *
26677959 AGCACTAAGTATGCGATTTAACTATGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * * *
26677986 TGCACTAAGTGTGCGAAATGAATA-GG
1 AGCACTAAGTGTGCGAATTGACTATGT
* *
26678012 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGAATTGACTATGT
* * *
26678040 GGCACTAAGTGTGCGAGGTTGATTATGT
1 AGCACTAAGTGTGCGA-ATTGACTATGT
* * *
26678068 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGAATTGACTATGT
* * *
26678095 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAATTGACTATGT
*
26678122 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26678137 GACTCAATAT
Statistics
Matches: 124, Mismatches: 24, Indels: 6
0.81 0.16 0.04
Matches are distributed among these distances:
26 1 0.01
27 100 0.81
28 23 0.19
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAATTGACTATGT
Found at i:26678083 original size:55 final size:54
Alignment explanation
Indices: 26677987--26678136 Score: 167
Period size: 55 Copynumber: 2.8 Consensus size: 54
26677977 TAACTATGTT
** * * * *
26677987 GCACTAAGTGTGCGAAATGAATAGGAT-GCACTAAGTGTGCGAATTGACCATGCG
1 GCACTAAGTGTGCGAGTTGATTA-TATAGCACTAAGTGTGCGAATTGACCACGCA
* * ** *
26678041 GCACTAAGTGTGCGAGGTTGATTATGTAGCACTAAGTGTGCGATTTGATTACGTA
1 GCACTAAGTGTGCGA-GTTGATTATATAGCACTAAGTGTGCGAATTGACCACGCA
*
26678096 GCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 GCACTAAGTGTGCGAGTTGATTATATAGCACTAAGTGTGCG
26678137 GACTCAATAT
Statistics
Matches: 81, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
54 40 0.49
55 41 0.51
ACGTcount: A:0.27, C:0.15, G:0.30, T:0.28
Consensus pattern (54 bp):
GCACTAAGTGTGCGAGTTGATTATATAGCACTAAGTGTGCGAATTGACCACGCA
Found at i:26678127 original size:82 final size:81
Alignment explanation
Indices: 26677956--26678136 Score: 193
Period size: 82 Copynumber: 2.2 Consensus size: 81
26677946 GATTAAATTG
* * *
26677956 TACAGCACTAAGTATGCGATTTAACTATGTTGCACTAAGTGTGCGAAATGAATAGGATGCACTAA
1 TACAGCACTAAGTGTGCGAGTTAACTATGTAGCACTAAGTGTGCGAAATGAATAGGATGCACTAA
26678021 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * * ** * *
26678037 TGCGGCACTAAGTGTGCGAGGTTGATTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-GTTAACTATGTAGCACTAAGTGTGCGAAATGAATAGGAT-GCACT
* **
26678101 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26678119 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26678137 GACTCAATAT
Statistics
Matches: 80, Mismatches: 18, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
81 17 0.21
82 63 0.79
ACGTcount: A:0.28, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGAGTTAACTATGTAGCACTAAGTGTGCGAAATGAATAGGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26686053 original size:27 final size:27
Alignment explanation
Indices: 26686022--26686199 Score: 205
Period size: 27 Copynumber: 6.6 Consensus size: 27
26686012 TAAATTGTAC
26686022 AGCACTAAGTGTGCGATTTGACTATGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* ** *
26686049 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26686075 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGATTTGACTATGT
*
26686103 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGA-TTTGACTATGT
* *
26686131 AGCACTAAGTGTGCGATTTGATTACGT
1 AGCACTAAGTGTGCGATTTGACTATGT
* * *
26686158 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGATTTGACTATGT
*
26686185 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
26686200 GACTCAATAT
Statistics
Matches: 129, Mismatches: 19, Indels: 6
0.84 0.12 0.04
Matches are distributed among these distances:
27 106 0.82
28 23 0.18
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGATTTGACTATGT
Found at i:26686136 original size:82 final size:81
Alignment explanation
Indices: 26686023--26686178 Score: 233
Period size: 82 Copynumber: 1.9 Consensus size: 81
26686013 AAATTGTACA
* *
26686023 GCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATG-ATGCACTAAGTG
1 GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTA-GCACTAAGTG
26686087 TGCGAATTGACCATGCG
65 TGCGAATTGACCATGCG
** *
26686104 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACGTAGCACTAAGTG
1 GCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTG
*
26686169 TGCGAGTTGA
65 TGCGAATTGA
26686179 TTATATAGCA
Statistics
Matches: 67, Mismatches: 6, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
81 15 0.22
82 51 0.76
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.29
Consensus pattern (81 bp):
GCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:26686190 original size:82 final size:81
Alignment explanation
Indices: 26686019--26686199 Score: 229
Period size: 82 Copynumber: 2.2 Consensus size: 81
26686009 GATTAAATTG
* *
26686019 TACAGCACTAAGTGTGCGATTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
26686084 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * ** *
26686100 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCGATTTGATTACG-TAGCACT
1 TACAGCACTAAGTGTGCGA-TTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGAT-GCACT
* **
26686164 AAGTGTGCGAGTTGATTA
64 AAGTGTGCGAATTGACCA
* *
26686182 TATAGCACTGAGTGTGCG
1 TACAGCACTAAGTGTGCG
26686200 GACTCAATAT
Statistics
Matches: 84, Mismatches: 14, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
81 18 0.21
82 66 0.79
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGATTTGACTATGTAGCACTAAGTGTGCGAAATGAATACGATGCACTAA
GTGTGCGAATTGACCA
Found at i:26699766 original size:40 final size:40
Alignment explanation
Indices: 26699722--26699979 Score: 306
Period size: 40 Copynumber: 6.5 Consensus size: 40
26699712 CTGTCCGGGC
* * *
26699722 TAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGAT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTG-TTAAATCCGGAT
* * *
26699762 TAAGTTCCGAAGGCATTTGTACGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
* *
26699802 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
**
26699842 TAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGAT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
* *
26699882 TAAGTTCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
* * ** **
26699922 TATGTCCCGAAGGCA-TTGTGTGAGTTACTAAATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
*
26699961 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
26699980 AACGAGGAGC
Statistics
Matches: 194, Mismatches: 21, Indels: 6
0.88 0.10 0.03
Matches are distributed among these distances:
39 35 0.18
40 151 0.78
41 8 0.04
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
Found at i:26699929 original size:120 final size:119
Alignment explanation
Indices: 26699715--26699976 Score: 375
Period size: 120 Copynumber: 2.2 Consensus size: 119
26699705 TTGAATGCTG
** * * *
26699715 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGTTCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATACGTGC-GAGTTG-TTAAATCCGGATTAAGTTCCGAAGGCAT
**
26699778 TTGTACGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
64 TTGTACGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
26699835 TCCGGGTTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGATTAAGTTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGATTAAGTTCCGAAGGCATTT
* * *
26699900 GTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
66 GTACGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
*
26699954 TCCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
26699977 TTGAACGAGG
Statistics
Matches: 127, Mismatches: 13, Indels: 5
0.88 0.09 0.03
Matches are distributed among these distances:
119 33 0.26
120 87 0.69
121 7 0.06
ACGTcount: A:0.24, C:0.19, G:0.28, T:0.29
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGATTAAGTTCCGAAGGCATTT
GTACGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:26706019 original size:57 final size:57
Alignment explanation
Indices: 26705931--26706044 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
26705921 CCAAAGTTGA
*
26705931 CCCTAGTCGGGAAGTGGTTTCGGGACCGCTAAACCGAGTCACCGAAATGTTTGAATG
1 CCCTAGTCGGGAAGTGGCTTCGGGACCGCTAAACCGAGTCACCGAAATGTTTGAATG
*
26705988 CCCTAGTGGGGAAGTGGCTTCGGGACCGCTAAACCGAGTCACCGAAATGTTTGAATG
1 CCCTAGTCGGGAAGTGGCTTCGGGACCGCTAAACCGAGTCACCGAAATGTTTGAATG
26706045 TGATACTTAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.25, C:0.23, G:0.31, T:0.22
Consensus pattern (57 bp):
CCCTAGTCGGGAAGTGGCTTCGGGACCGCTAAACCGAGTCACCGAAATGTTTGAATG
Found at i:26706284 original size:56 final size:58
Alignment explanation
Indices: 26706218--26706332 Score: 180
Period size: 56 Copynumber: 2.0 Consensus size: 58
26706208 GACTTGCATG
* *
26706218 TCAAATTCCCCCCCCCCCTAATGAGTAGT-G-GGCCATGACAAGGAAGGATGGGCAAA
1 TCAAAATCCCCCCCCCCCTAATGAGTAGTGGCGGCCATGACAAAGAAGGATGGGCAAA
*
26706274 TCAAAATCCCCCCCCCCCTAATGAGTAGTGGCCGGCCATGACAAAGAATGATGGGCAAA
1 TCAAAATCCCCCCCCCCCTAATGAGTAGTGG-CGGCCATGACAAAGAAGGATGGGCAAA
26706333 ACATGTCATG
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
56 28 0.53
57 1 0.02
59 24 0.45
ACGTcount: A:0.31, C:0.30, G:0.23, T:0.16
Consensus pattern (58 bp):
TCAAAATCCCCCCCCCCCTAATGAGTAGTGGCGGCCATGACAAAGAAGGATGGGCAAA
Found at i:26707557 original size:40 final size:40
Alignment explanation
Indices: 26707513--26707770 Score: 315
Period size: 40 Copynumber: 6.5 Consensus size: 40
26707503 CTGTCCGGGC
* * *
26707513 TAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGAT
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTG-TTAAATCCGGAT
* *
26707553 TAAGTTCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
* *
26707593 TAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
**
26707633 TAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGAT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
* *
26707673 TAAGTTCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
* * ** **
26707713 TATGTCCCGAAGGCA-TTGTGTGAGTTACTAAATCCGGGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
*
26707752 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
26707771 AACGAGGAGC
Statistics
Matches: 196, Mismatches: 19, Indels: 6
0.89 0.09 0.03
Matches are distributed among these distances:
39 35 0.18
40 152 0.78
41 9 0.05
ACGTcount: A:0.24, C:0.18, G:0.28, T:0.29
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTGTTAAATCCGGAT
Found at i:26707720 original size:120 final size:119
Alignment explanation
Indices: 26707506--26707767 Score: 384
Period size: 120 Copynumber: 2.2 Consensus size: 119
26707496 TTGAATGCTG
** * * *
26707506 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAG-TGAATATATCCGGATTAAGTTCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATACGTGC-GAGTTG-TTAAATCCGGATTAAGTTCCGAAGGCAT
**
26707569 TTGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
64 TTGTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAA
*
26707626 TCCGGGTTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGATTAAGTTCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGATTAAGTTCCGAAGGCATTT
* *
26707691 GTGCGAGTTGTTAAATCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAA
66 GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
*
26707745 TCCGGGCTATGTCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCAT
26707768 TTGAACGAGG
Statistics
Matches: 128, Mismatches: 12, Indels: 5
0.88 0.08 0.03
Matches are distributed among these distances:
119 33 0.26
120 88 0.69
121 7 0.05
ACGTcount: A:0.24, C:0.19, G:0.29, T:0.29
Consensus pattern (119 bp):
TCCGGGCTAAGTCCCGAAGGCATACGTGCGAGTTGTTAAATCCGGATTAAGTTCCGAAGGCATTT
GTGCGAGTTGTTAAATCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAA
Found at i:26709717 original size:27 final size:27
Alignment explanation
Indices: 26709660--26709746 Score: 86
Period size: 27 Copynumber: 3.3 Consensus size: 27
26709650 TATACCGATG
* * **
26709660 GCTTCGCCACATATACTATTTCTGGTG
1 GCTTTGCCACATATACTATTACTGGCA
*
26709687 GCTTTGCCACATATACTGTTACTGGCA
1 GCTTTGCCACATATACTATTACTGGCA
***
26709714 GCTTTGTTGCA-ATACTATTACTGGCA
1 GCTTTGCCACATATACTATTACTGGCA
*
26709740 GCCTTGC
1 GCTTTGC
26709747 TGTGATATTG
Statistics
Matches: 49, Mismatches: 11, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
26 19 0.39
27 30 0.61
ACGTcount: A:0.20, C:0.25, G:0.20, T:0.36
Consensus pattern (27 bp):
GCTTTGCCACATATACTATTACTGGCA
Found at i:26713400 original size:40 final size:40
Alignment explanation
Indices: 26713344--26713446 Score: 145
Period size: 40 Copynumber: 2.6 Consensus size: 40
26713334 TGCTCACGTA
* * *
26713344 GGAGCTTTGCTGATACACAGCTTATTCATAAGCTCACAGG
1 GGAGATTTGCTAATACACAGCTTATTCATAAGCTCACAAG
*
26713384 GGA-AGTTTGTTAATACACAGCTTATTCATAAGCTCACAAG
1 GGAGA-TTTGCTAATACACAGCTTATTCATAAGCTCACAAG
*
26713424 GGAGATTTGCTAATACACGGCTT
1 GGAGATTTGCTAATACACAGCTT
26713447 GTCCTTAGCT
Statistics
Matches: 55, Mismatches: 6, Indels: 4
0.85 0.09 0.06
Matches are distributed among these distances:
40 54 0.98
41 1 0.02
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.29
Consensus pattern (40 bp):
GGAGATTTGCTAATACACAGCTTATTCATAAGCTCACAAG
Found at i:26713496 original size:39 final size:39
Alignment explanation
Indices: 26713276--26713564 Score: 169
Period size: 39 Copynumber: 7.4 Consensus size: 39
26713266 GGATCTTCAT
* * * **
26713276 TGATACACAAGTTATCCATAAGTTCACAGAAGAGCTTCCC
1 TGATACACAACTTATCCATAAGCTCATAG-AGAGCTTTGC
* * **
26713316 TGATA-ATAATTTAT-CATTTGCTCACGTAG-GAGCTTTGC
1 TGATACACAACTTATCCATAAGCTCA--TAGAGAGCTTTGC
* * * * *
26713354 TGATACACAGCTTATTCATAAGCTCACAGGGGAAG-TTTGT
1 TGATACACAACTTATCCATAAGCTCATA-GAG-AGCTTTGC
* * * * * *
26713394 TAATACACAGCTTATTCATAAGCTCACAAGGGAGATTTGC
1 TGATACACAACTTATCCATAAGCTCA-TAGAGAGCTTTGC
* ** * * *
26713434 TAATACACGGCTTGTCC-TTAGCTCATAGAAAGCTTTGC
1 TGATACACAACTTATCCATAAGCTCATAGAGAGCTTTGC
* * *
26713472 TGATACACAATTTATCCATAAGCTCA-AGGGGAGCTTTGT
1 TGATACACAACTTATCCATAAGCTCATA-GAGAGCTTTGC
* * *
26713511 TGATACACAACTTCTCC-TTAGCTCATGGAGGAGCTTTGC
1 TGATACACAACTTATCCATAAGCTCATAGA-GAGCTTTGC
26713550 TGATACACAACTTAT
1 TGATACACAACTTAT
26713565 AAAACCATTC
Statistics
Matches: 194, Mismatches: 42, Indels: 27
0.74 0.16 0.10
Matches are distributed among these distances:
38 50 0.26
39 75 0.39
40 66 0.34
41 3 0.02
ACGTcount: A:0.30, C:0.21, G:0.18, T:0.31
Consensus pattern (39 bp):
TGATACACAACTTATCCATAAGCTCATAGAGAGCTTTGC
Found at i:26713530 original size:77 final size:79
Alignment explanation
Indices: 26713396--26713564 Score: 216
Period size: 78 Copynumber: 2.2 Consensus size: 79
26713386 AAGTTTGTTA
* * ** *
26713396 ATACACAGCTTATTCATAAGCTCACAAGGGAGATTTGCTAATACACGGCTTGTCCTTAGCTCATA
1 ATACACAACTTATCCATAAGCTCACAAGGGAGATTTGCTAATACACAACTTCTCCTTAGCTCATA
26713461 GA-AAGCTTTGCTG
66 GAGAAGCTTTGCTG
* * * * * *
26713474 ATACACAATTTATCCATAAGCTCA-AGGGGAGCTTTGTTGATACACAACTTCTCCTTAGCTCATG
1 ATACACAACTTATCCATAAGCTCACAAGGGAGATTTGCTAATACACAACTTCTCCTTAGCTCATA
*
26713538 GAGGAGCTTTGCTG
66 GAGAAGCTTTGCTG
26713552 ATACACAACTTAT
1 ATACACAACTTAT
26713565 AAAACCATTC
Statistics
Matches: 77, Mismatches: 13, Indels: 2
0.84 0.14 0.02
Matches are distributed among these distances:
77 34 0.44
78 43 0.56
ACGTcount: A:0.30, C:0.22, G:0.18, T:0.30
Consensus pattern (79 bp):
ATACACAACTTATCCATAAGCTCACAAGGGAGATTTGCTAATACACAACTTCTCCTTAGCTCATA
GAGAAGCTTTGCTG
Found at i:26715976 original size:15 final size:15
Alignment explanation
Indices: 26715956--26715997 Score: 59
Period size: 15 Copynumber: 2.8 Consensus size: 15
26715946 TAAAATATAA
*
26715956 TTATTATTTT-TATTT
1 TTATTATTTTGGA-TT
26715971 TTATTATTTTGGATT
1 TTATTATTTTGGATT
26715986 TTATTATTTTGG
1 TTATTATTTTGG
26715998 GGAAGTTCAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
15 24 0.96
16 1 0.04
ACGTcount: A:0.19, C:0.00, G:0.10, T:0.71
Consensus pattern (15 bp):
TTATTATTTTGGATT
Found at i:26729458 original size:43 final size:42
Alignment explanation
Indices: 26729410--26729490 Score: 101
Period size: 42 Copynumber: 1.9 Consensus size: 42
26729400 CCATATTGTA
26729410 GACAAGCCACCA-ATAATTGCAGATAAACTACCAAAAATATGTG
1 GACAAGCCACCAGAT--TTGCAGATAAACTACCAAAAATATGTG
* * * *
26729453 GACAAGCTACCAGATTTGTAGATAAACTGCCAGAAATA
1 GACAAGCCACCAGATTTGCAGATAAACTACCAAAAATA
26729491 CATGGTTAAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
42 20 0.61
43 11 0.33
44 2 0.06
ACGTcount: A:0.44, C:0.20, G:0.16, T:0.20
Consensus pattern (42 bp):
GACAAGCCACCAGATTTGCAGATAAACTACCAAAAATATGTG
Found at i:26731930 original size:47 final size:47
Alignment explanation
Indices: 26731797--26731967 Score: 184
Period size: 47 Copynumber: 3.6 Consensus size: 47
26731787 ATAGTAAAAC
* * * *
26731797 TATGGTCTTGCACA-TAGTCACATATCACATACCGAGGCCATAGCCCAGC
1 TATGGTCTTACACAGTAG-CACATATCAC--ACCGATGCCATATCCCAGA
* * * *
26731846 CATGGTCTTACAC-GGATCACATATCACACTGATGCCATATCCCAGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* *
26731892 TATGGTCTTATACAGTAGCACATATCACACCGATGCCATATCCCGGA
1 TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
* * *
26731939 TATGGTCTTATACGGAAGCACATATCACA
1 TATGGTCTTACACAGTAGCACATATCACA
26731968 TTTCTCCGAA
Statistics
Matches: 104, Mismatches: 16, Indels: 6
0.83 0.13 0.05
Matches are distributed among these distances:
46 26 0.25
47 56 0.54
48 10 0.10
49 12 0.12
ACGTcount: A:0.30, C:0.28, G:0.17, T:0.25
Consensus pattern (47 bp):
TATGGTCTTACACAGTAGCACATATCACACCGATGCCATATCCCAGA
Found at i:26734379 original size:24 final size:23
Alignment explanation
Indices: 26734325--26734393 Score: 70
Period size: 24 Copynumber: 3.0 Consensus size: 23
26734315 GGTACGAAAC
* *
26734325 AAAAGGAAAGGAAAGA-GAGAAG
1 AAAAGGAGAGGAAAAAGGAGAAG
26734347 AAAAGGGAGAGGAAAAAGGAGAAG
1 AAAA-GGAGAGGAAAAAGGAGAAG
*
26734371 AGTAAGGAGA-GAAAAGAGGAGAA
1 A-AAAGGAGAGGAAAA-AGGAGAA
26734394 AAGTTTGGTG
Statistics
Matches: 40, Mismatches: 3, Indels: 6
0.82 0.06 0.12
Matches are distributed among these distances:
22 4 0.10
23 15 0.38
24 19 0.47
25 2 0.05
ACGTcount: A:0.59, C:0.00, G:0.39, T:0.01
Consensus pattern (23 bp):
AAAAGGAGAGGAAAAAGGAGAAG
Found at i:26736740 original size:14 final size:14
Alignment explanation
Indices: 26736721--26736747 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
26736711 CTAAAGTCAA
26736721 ATAAATATTTAAAT
1 ATAAATATTTAAAT
26736735 ATAAATATTTAAA
1 ATAAATATTTAAA
26736748 CATGCCTTTG
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (14 bp):
ATAAATATTTAAAT
Found at i:26747764 original size:15 final size:15
Alignment explanation
Indices: 26747744--26747776 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26747734 AATCATTGGG
26747744 TTGAGCCTGAAAAGT
1 TTGAGCCTGAAAAGT
*
26747759 TTGAGCCTGAAAGGT
1 TTGAGCCTGAAAAGT
26747774 TTG
1 TTG
26747777 TCAACAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (15 bp):
TTGAGCCTGAAAAGT
Found at i:26748610 original size:16 final size:17
Alignment explanation
Indices: 26748582--26748613 Score: 57
Period size: 16 Copynumber: 1.9 Consensus size: 17
26748572 AGAAAGAGAC
26748582 AGAGAACAGAGAAACAG
1 AGAGAACAGAGAAACAG
26748599 AGAGAA-AGAGAAACA
1 AGAGAACAGAGAAACA
26748614 AAAACTAAAT
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 9 0.60
17 6 0.40
ACGTcount: A:0.62, C:0.09, G:0.28, T:0.00
Consensus pattern (17 bp):
AGAGAACAGAGAAACAG
Found at i:26753865 original size:9 final size:9
Alignment explanation
Indices: 26753851--26753876 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
26753841 TTGATTTGAT
26753851 TAACTCGAA
1 TAACTCGAA
26753860 TAACTCGAA
1 TAACTCGAA
26753869 TAACTCGA
1 TAACTCGA
26753877 TTCAAATAAC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.42, C:0.23, G:0.12, T:0.23
Consensus pattern (9 bp):
TAACTCGAA
Found at i:26755215 original size:40 final size:40
Alignment explanation
Indices: 26755155--26755234 Score: 133
Period size: 40 Copynumber: 2.0 Consensus size: 40
26755145 GGGCTTTTCT
* * *
26755155 AGATCGCAAGACTATCGAGATCTTAAATCGCGAATGCAAG
1 AGATAGCAAGACTATCGAGATCTTAAATCACGAACGCAAG
26755195 AGATAGCAAGACTATCGAGATCTTAAATCACGAACGCAAG
1 AGATAGCAAGACTATCGAGATCTTAAATCACGAACGCAAG
26755235 TTACGTGATT
Statistics
Matches: 37, Mismatches: 3, Indels: 0
0.93 0.08 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.40, C:0.20, G:0.21, T:0.19
Consensus pattern (40 bp):
AGATAGCAAGACTATCGAGATCTTAAATCACGAACGCAAG
Found at i:26760680 original size:19 final size:19
Alignment explanation
Indices: 26760635--26760681 Score: 60
Period size: 18 Copynumber: 2.5 Consensus size: 19
26760625 AGTAAAGTTT
* *
26760635 ATATTAAAATCCTTGAAGG
1 ATATTAAAATCCTAGAAGC
*
26760654 AT-TTAAAATGCTAGAAGC
1 ATATTAAAATCCTAGAAGC
26760672 ATATTAAAAT
1 ATATTAAAAT
26760682 TCTCGGGAAA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
18 15 0.62
19 9 0.38
ACGTcount: A:0.47, C:0.09, G:0.13, T:0.32
Consensus pattern (19 bp):
ATATTAAAATCCTAGAAGC
Found at i:26761991 original size:13 final size:13
Alignment explanation
Indices: 26761968--26762009 Score: 52
Period size: 13 Copynumber: 3.2 Consensus size: 13
26761958 TTCTAAAATC
26761968 AAATA-AATACTT
1 AAATATAATACTT
26761980 AAATATAATACTT
1 AAATATAATACTT
26761993 CAAA-ATAAATACTT
1 -AAATAT-AATACTT
26762007 AAA
1 AAA
26762010 CATGCCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
12 5 0.19
13 12 0.44
14 10 0.37
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (13 bp):
AAATATAATACTT
Found at i:26762003 original size:14 final size:12
Alignment explanation
Indices: 26761968--26762009 Score: 57
Period size: 12 Copynumber: 3.2 Consensus size: 12
26761958 TTCTAAAATC
26761968 AAATAAATACTT
1 AAATAAATACTT
26761980 AAATATAATACTT
1 AAATA-AATACTT
26761993 CAAAATAAATACTT
1 --AAATAAATACTT
26762007 AAA
1 AAA
26762010 CATGCCTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 6
0.82 0.00 0.18
Matches are distributed among these distances:
12 8 0.30
13 7 0.26
14 7 0.26
15 5 0.19
ACGTcount: A:0.60, C:0.10, G:0.00, T:0.31
Consensus pattern (12 bp):
AAATAAATACTT
Found at i:26763568 original size:15 final size:15
Alignment explanation
Indices: 26763548--26763580 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26763538 AATCATTGGG
26763548 TTGAGCCTGAAAAGT
1 TTGAGCCTGAAAAGT
*
26763563 TTGAGCCTGAAAGGT
1 TTGAGCCTGAAAAGT
26763578 TTG
1 TTG
26763581 TCAAAAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (15 bp):
TTGAGCCTGAAAAGT
Found at i:26764172 original size:15 final size:15
Alignment explanation
Indices: 26764152--26764181 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
26764142 CCCATCTGCT
*
26764152 TACCCAATTACCTAA
1 TACCCAATAACCTAA
26764167 TACCCAATAACCTAA
1 TACCCAATAACCTAA
26764182 GCCCATACAA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.33, G:0.00, T:0.23
Consensus pattern (15 bp):
TACCCAATAACCTAA
Found at i:26766464 original size:28 final size:28
Alignment explanation
Indices: 26766430--26766487 Score: 116
Period size: 28 Copynumber: 2.1 Consensus size: 28
26766420 ACTATTTGTG
26766430 TTGTGCTCATATTTTCCTTTTATATTTA
1 TTGTGCTCATATTTTCCTTTTATATTTA
26766458 TTGTGCTCATATTTTCCTTTTATATTTA
1 TTGTGCTCATATTTTCCTTTTATATTTA
26766486 TT
1 TT
26766488 ATTCTCTAAG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 30 1.00
ACGTcount: A:0.17, C:0.14, G:0.07, T:0.62
Consensus pattern (28 bp):
TTGTGCTCATATTTTCCTTTTATATTTA
Found at i:26769508 original size:65 final size:65
Alignment explanation
Indices: 26769399--26769528 Score: 251
Period size: 65 Copynumber: 2.0 Consensus size: 65
26769389 TTGTTTTTTC
*
26769399 CCTATAAATATTAATTTTGGACTCAACAAACTGATGAGTGAATGTCGGAGTCAACAAAAACATAA
1 CCTACAAATATTAATTTTGGACTCAACAAACTGATGAGTGAATGTCGGAGTCAACAAAAACATAA
26769464 CCTACAAATATTAATTTTGGACTCAACAAACTGATGAGTGAATGTCGGAGTCAACAAAAACATAA
1 CCTACAAATATTAATTTTGGACTCAACAAACTGATGAGTGAATGTCGGAGTCAACAAAAACATAA
26769529 AGATGATGGG
Statistics
Matches: 64, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
65 64 1.00
ACGTcount: A:0.43, C:0.16, G:0.15, T:0.25
Consensus pattern (65 bp):
CCTACAAATATTAATTTTGGACTCAACAAACTGATGAGTGAATGTCGGAGTCAACAAAAACATAA
Found at i:26770203 original size:29 final size:29
Alignment explanation
Indices: 26770153--26770221 Score: 77
Period size: 29 Copynumber: 2.3 Consensus size: 29
26770143 TTTTTATGAA
*
26770153 TTTAAAATTTAGTCTTTGTA-TTTATATT
1 TTTAAAAATTAGTCTTTGTATTTTATATT
* *
26770181 TTTAAGAAATTAGTTTTTTTATTTTTATATT
1 TTTAA-AAATTAGTCTTTGTA-TTTTATATT
*
26770212 TTTTAAAATT
1 TTTAAAAATT
26770222 TAATTTAAAT
Statistics
Matches: 34, Mismatches: 4, Indels: 4
0.81 0.10 0.10
Matches are distributed among these distances:
28 5 0.15
29 12 0.35
30 5 0.15
31 12 0.35
ACGTcount: A:0.30, C:0.01, G:0.06, T:0.62
Consensus pattern (29 bp):
TTTAAAAATTAGTCTTTGTATTTTATATT
Found at i:26775439 original size:20 final size:20
Alignment explanation
Indices: 26775413--26775464 Score: 61
Period size: 20 Copynumber: 2.6 Consensus size: 20
26775403 ACGGCTGTGC
26775413 CACACGGGCGTGT-GATAAGT
1 CACACGGGCGTGTGGA-AAGT
* *
26775433 TACACGGGTGTGTGGAAAGT
1 CACACGGGCGTGTGGAAAGT
*
26775453 CACACGGACGTG
1 CACACGGGCGTG
26775465 GGAGAAGTAA
Statistics
Matches: 26, Mismatches: 5, Indels: 2
0.79 0.15 0.06
Matches are distributed among these distances:
20 24 0.92
21 2 0.08
ACGTcount: A:0.25, C:0.19, G:0.37, T:0.19
Consensus pattern (20 bp):
CACACGGGCGTGTGGAAAGT
Found at i:26775472 original size:20 final size:19
Alignment explanation
Indices: 26775413--26775472 Score: 57
Period size: 20 Copynumber: 3.0 Consensus size: 19
26775403 ACGGCTGTGC
*
26775413 CACACGGGCGTGTGATAAGT
1 CACACGGGCGTGGGA-AAGT
* *
26775433 TACACGGGTGTGTGGAAAGT
1 CACACGGGCGTG-GGAAAGT
*
26775453 CACACGGACGTGGGAGAAGT
1 CACACGGGCGTGGGA-AAGT
26775473 AAAGGAGATT
Statistics
Matches: 32, Mismatches: 6, Indels: 4
0.76 0.14 0.10
Matches are distributed among these distances:
19 3 0.09
20 27 0.84
21 2 0.06
ACGTcount: A:0.27, C:0.17, G:0.38, T:0.18
Consensus pattern (19 bp):
CACACGGGCGTGGGAAAGT
Found at i:26780103 original size:10 final size:10
Alignment explanation
Indices: 26780076--26780125 Score: 57
Period size: 10 Copynumber: 4.9 Consensus size: 10
26780066 TTAAATTCTA
26780076 AAAGATAAAT
1 AAAGATAAAT
26780086 ACAA-ATAAAT
1 A-AAGATAAAT
*
26780096 AAAGATAATT
1 AAAGATAAAT
*
26780106 AAAGATAAAAA
1 AAAGAT-AAAT
26780117 AAAGATAAA
1 AAAGATAAA
26780126 AGCTAAAATT
Statistics
Matches: 34, Mismatches: 3, Indels: 6
0.79 0.07 0.14
Matches are distributed among these distances:
9 2 0.06
10 22 0.65
11 10 0.29
ACGTcount: A:0.72, C:0.02, G:0.08, T:0.18
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:26780785 original size:19 final size:19
Alignment explanation
Indices: 26780754--26780804 Score: 56
Period size: 19 Copynumber: 2.8 Consensus size: 19
26780744 AATACATCAC
26780754 TTTTTTTTC--TTTTT-CT
1 TTTTTTTTCTATTTTTCCT
26780770 ATTTTTTTTCTATTTTTCCT
1 -TTTTTTTTCTATTTTTCCT
26780790 TTTTGTTTT-TATTTT
1 TTTT-TTTTCTATTTT
26780805 AATCATTATT
Statistics
Matches: 30, Mismatches: 0, Indels: 6
0.83 0.00 0.17
Matches are distributed among these distances:
17 9 0.30
19 15 0.50
20 6 0.20
ACGTcount: A:0.06, C:0.10, G:0.02, T:0.82
Consensus pattern (19 bp):
TTTTTTTTCTATTTTTCCT
Found at i:26780998 original size:99 final size:99
Alignment explanation
Indices: 26780822--26781005 Score: 269
Period size: 99 Copynumber: 1.9 Consensus size: 99
26780812 ATTATTATTG
* * * * * *
26780822 CTTAAGAATACATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCGCCCCGGTTAC
1 CTTAAGAACACATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCACCCCGATTAC
26780887 TCAGCCCAACATACTCCTAATTTATTATATTTTT
66 TCAGCCCAACATACTCCTAATTTATTATATTTTT
* **
26780921 CTTAAGAACATATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCACCTTGATTAC
1 CTTAAGAACACATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCACCCCGATTAC
* *
26780986 TCAGCCCGACATATTCCTAA
66 TCAGCCCAACATACTCCTAA
26781006 AAAAAATTAT
Statistics
Matches: 74, Mismatches: 11, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
99 74 1.00
ACGTcount: A:0.33, C:0.28, G:0.14, T:0.25
Consensus pattern (99 bp):
CTTAAGAACACATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCACCCCGATTAC
TCAGCCCAACATACTCCTAATTTATTATATTTTT
Found at i:26781017 original size:99 final size:98
Alignment explanation
Indices: 26780812--26781017 Score: 241
Period size: 99 Copynumber: 2.1 Consensus size: 98
26780802 TTTAATCATT
* * * * *
26780812 ATTATTATTGCTTAAGAATACATTGAACCTTTTGACGCGAAGAGAGATGACAGCCAAGCACCCCG
1 ATTATT-TTGCTTAAGAACACATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCA
* ***
26780877 CCCCGGTTACTCAGCCCAACATACTCCTAATTTA
65 CCCCGATTACTCAGCCCAACATACTCCTAAAAAA
* * *
26780911 TTATATTTTTCTTAAGAACATATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCA
1 AT-TATTTTGCTTAAGAACACATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCA
** * *
26780976 CCTTGATTACTCAGCCCGACATATTCCTAAAAAAA
65 CCCCGATTACTCAGCCCAACATACTCCT-AAAAAA
26781011 ATTATTT
1 ATTATTT
26781018 AATTTTGGTT
Statistics
Matches: 88, Mismatches: 17, Indels: 4
0.81 0.16 0.04
Matches are distributed among these distances:
99 80 0.91
100 8 0.09
ACGTcount: A:0.34, C:0.25, G:0.13, T:0.28
Consensus pattern (98 bp):
ATTATTTTGCTTAAGAACACATTAAACCTTTTGACACGAAGAGAGATGACAGCCAAACACCCCAC
CCCGATTACTCAGCCCAACATACTCCTAAAAAA
Found at i:26781494 original size:3 final size:3
Alignment explanation
Indices: 26781486--26781528 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
26781476 AATATTCTTA
26781486 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT A
26781529 TGGGCAGCAA
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:26781868 original size:16 final size:16
Alignment explanation
Indices: 26781847--26781917 Score: 76
Period size: 16 Copynumber: 4.5 Consensus size: 16
26781837 ACATCCAAAC
*
26781847 AAAATAAAGTAATAAT
1 AAAATAAAGTAAAAAT
*
26781863 AAAATAAAAT-AAAAT
1 AAAATAAAGTAAAAAT
*
26781878 AAAAATTAAG-AAAAAT
1 -AAAATAAAGTAAAAAT
26781894 AAAATAAA-TAAAAAT
1 AAAATAAAGTAAAAAT
26781909 ACAAATAAA
1 A-AAATAAA
26781918 AATTGGGTTG
Statistics
Matches: 46, Mismatches: 5, Indels: 8
0.78 0.08 0.14
Matches are distributed among these distances:
15 18 0.39
16 28 0.61
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.20
Consensus pattern (16 bp):
AAAATAAAGTAAAAAT
Found at i:26781870 original size:5 final size:5
Alignment explanation
Indices: 26781847--26781918 Score: 67
Period size: 5 Copynumber: 13.8 Consensus size: 5
26781837 ACATCCAAAC
* *
26781847 AAAAT AAAGT AATAAT AAAAT AAAAT AAAAT AAAAATT AAGA- AAAAT
1 AAAAT AAAAT AA-AAT AAAAT AAAAT AAAAT -AAAA-T AAAAT AAAAT
26781894 AAAAT -AAAT AAAAAT ACAAAT AAAA
1 AAAAT AAAAT -AAAAT A-AAAT AAAA
26781919 ATTGGGTTGC
Statistics
Matches: 56, Mismatches: 4, Indels: 14
0.76 0.05 0.19
Matches are distributed among these distances:
4 7 0.12
5 28 0.50
6 20 0.36
7 1 0.02
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.19
Consensus pattern (5 bp):
AAAAT
Found at i:26781871 original size:21 final size:20
Alignment explanation
Indices: 26781847--26781918 Score: 67
Period size: 21 Copynumber: 3.5 Consensus size: 20
26781837 ACATCCAAAC
*
26781847 AAAATAAAGTAATAATAAAAT
1 AAAATAAAATAA-AATAAAAT
*
26781868 AAAATAAAATAAAAATTAAGA-
1 AAAATAAAAT-AAAA-TAAAAT
26781889 AAAATAAAAT-AAATAAAAAT
1 AAAATAAAATAAAAT-AAAAT
26781909 ACAAATAAAA
1 A-AAATAAAA
26781919 ATTGGGTTGC
Statistics
Matches: 43, Mismatches: 3, Indels: 10
0.77 0.05 0.18
Matches are distributed among these distances:
18 1 0.02
19 6 0.14
20 1 0.02
21 29 0.67
22 6 0.14
ACGTcount: A:0.76, C:0.01, G:0.03, T:0.19
Consensus pattern (20 bp):
AAAATAAAATAAAATAAAAT
Found at i:26785559 original size:20 final size:20
Alignment explanation
Indices: 26785522--26785559 Score: 51
Period size: 20 Copynumber: 1.9 Consensus size: 20
26785512 TGATGGGGAG
*
26785522 CAAGAATATCAAGTTGGATT
1 CAAGAATATCAAGCTGGATT
26785542 CAAGAA-ATCGAAGCTGGA
1 CAAGAATATC-AAGCTGGA
26785560 GGAGAGAGAA
Statistics
Matches: 16, Mismatches: 1, Indels: 2
0.84 0.05 0.11
Matches are distributed among these distances:
19 3 0.19
20 13 0.81
ACGTcount: A:0.42, C:0.13, G:0.24, T:0.21
Consensus pattern (20 bp):
CAAGAATATCAAGCTGGATT
Found at i:26787217 original size:46 final size:46
Alignment explanation
Indices: 26787165--26787396 Score: 306
Period size: 46 Copynumber: 5.0 Consensus size: 46
26787155 GTGTGCTATT
*
26787165 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACTATGGCAATC-
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAA-CA
*
26787211 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACC
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * *
26787257 TGATATGAAATGTCTAAGACCATGGTTGAAAGATACCATAGCAACG
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
***
26787303 TGATATGAAATGAACAAGACCATGGTTGAAAGATACCATGGCAACA
1 TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
* * * * * *
26787349 TGACA-GAAAATGAGTAAGACCATAGTTGAAAGACACTATGGCATCA
1 TGATATG-AAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
26787395 TG
1 TG
26787397 TCAAAGATAA
Statistics
Matches: 168, Mismatches: 16, Indels: 4
0.89 0.09 0.02
Matches are distributed among these distances:
45 2 0.01
46 166 0.99
ACGTcount: A:0.40, C:0.14, G:0.23, T:0.23
Consensus pattern (46 bp):
TGATATGAAATGTGTAAGACCATGGTTGAAAGATACCATGGCAACA
Found at i:26789878 original size:10 final size:10
Alignment explanation
Indices: 26789861--26789918 Score: 75
Period size: 10 Copynumber: 5.9 Consensus size: 10
26789851 TTAAATTCTA
26789861 AAAGATAAAT
1 AAAGATAAAT
*
26789871 ACAGATAAAT
1 AAAGATAAAT
*
26789881 -AAGATAATT
1 AAAGATAAAT
26789890 AAAGATAGAA-
1 AAAGATA-AAT
26789900 AAAGATAAAT
1 AAAGATAAAT
26789910 AAAGATAAA
1 AAAGATAAA
26789919 AGCTAAAATT
Statistics
Matches: 41, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
9 9 0.22
10 31 0.76
11 1 0.02
ACGTcount: A:0.67, C:0.02, G:0.12, T:0.19
Consensus pattern (10 bp):
AAAGATAAAT
Found at i:26794413 original size:20 final size:21
Alignment explanation
Indices: 26794384--26794426 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
26794374 AGTTATAATT
* *
26794384 AAATTTAAAATTTTAA-AAAA
1 AAATTAAAAATTTGAACAAAA
26794404 AAATTAAAAATTTGAACAAAA
1 AAATTAAAAATTTGAACAAAA
26794425 AA
1 AA
26794427 GGTGAGAGAG
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
20 14 0.70
21 6 0.30
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.28
Consensus pattern (21 bp):
AAATTAAAAATTTGAACAAAA
Found at i:26795964 original size:15 final size:15
Alignment explanation
Indices: 26795944--26795976 Score: 57
Period size: 15 Copynumber: 2.2 Consensus size: 15
26795934 AATTATTGGG
26795944 TTGAGCCTGAAAAGT
1 TTGAGCCTGAAAAGT
*
26795959 TTGAGCCTGAAAGGT
1 TTGAGCCTGAAAAGT
26795974 TTG
1 TTG
26795977 TAAACAGTTC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.27, C:0.12, G:0.30, T:0.30
Consensus pattern (15 bp):
TTGAGCCTGAAAAGT
Found at i:26798194 original size:148 final size:144
Alignment explanation
Indices: 26797944--26798234 Score: 458
Period size: 148 Copynumber: 2.0 Consensus size: 144
26797934 AAATATAATT
* *
26797944 TTTTAATAAAAGTTATTTTAAAGATAAAATGTGAATACCAATATAAAATTTTAACATGAATATTT
1 TTTTAATAAAAGTTATTTTAAAAATAAAATGTGAATACCAATATAAAATTTTAACACGAATATTT
26798009 AATGGCATAATTAATAATTTAATTTTAATATAAATATTCAATATGACTAAACAATTCAATAATAT
66 AATGGCATAATTAATAATTTAATTTTAATATAAATATTCAATATGACTAAACAATTCAATAATAT
*
26798074 AAATAATATAAAAC
131 AAACAATATAAAAC
* *
26798088 TTTTCATAAAATTTATTTTAAAAATAAAATGTGAAATTTATACCAATATAAAATTTTAACACGAA
1 TTTTAATAAAAGTTATTTTAAAAATAAAATGTG--A---ATACCAATATAAAATTTTAACACGAA
* * *
26798153 TATTTTATGGC-TAATTAATAATTTAATTTTGATATAAATATTCAATATGACTAAACAATTTAAT
61 TATTTAATGGCATAATTAATAATTTAATTTTAATATAAATATTCAATATGACTAAACAATTCAAT
26798217 AATATAAACAATATAAAA
126 AATATAAACAATATAAAA
26798235 TGTGAAATTT
Statistics
Matches: 134, Mismatches: 8, Indels: 6
0.91 0.05 0.04
Matches are distributed among these distances:
144 30 0.22
146 1 0.01
148 68 0.51
149 35 0.26
ACGTcount: A:0.50, C:0.07, G:0.05, T:0.38
Consensus pattern (144 bp):
TTTTAATAAAAGTTATTTTAAAAATAAAATGTGAATACCAATATAAAATTTTAACACGAATATTT
AATGGCATAATTAATAATTTAATTTTAATATAAATATTCAATATGACTAAACAATTCAATAATAT
AAACAATATAAAAC
Found at i:26798224 original size:17 final size:17
Alignment explanation
Indices: 26798204--26798260 Score: 53
Period size: 17 Copynumber: 3.2 Consensus size: 17
26798194 TCAATATGAC
26798204 TAAACAATTTAATAATA
1 TAAACAATTTAATAATA
* *
26798221 TAAACAATATAA-AATG
1 TAAACAATTTAATAATA
*
26798237 TGAAATTTAATTTAATAATA
1 T-AAA--CAATTTAATAATA
26798257 TAAA
1 TAAA
26798261 TAGTAGAAAT
Statistics
Matches: 31, Mismatches: 5, Indels: 6
0.74 0.12 0.14
Matches are distributed among these distances:
16 4 0.13
17 14 0.45
19 9 0.29
20 4 0.13
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.35
Consensus pattern (17 bp):
TAAACAATTTAATAATA
Found at i:26798774 original size:9 final size:9
Alignment explanation
Indices: 26798760--26798796 Score: 56
Period size: 9 Copynumber: 4.1 Consensus size: 9
26798750 CTATGTTTAA
26798760 TATTCGAAT
1 TATTCGAAT
26798769 TATTCGAAT
1 TATTCGAAT
* *
26798778 TATTTGAGT
1 TATTCGAAT
26798787 TATTCGAAT
1 TATTCGAAT
26798796 T
1 T
26798797 CGAAAACTCA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
9 24 1.00
ACGTcount: A:0.30, C:0.08, G:0.14, T:0.49
Consensus pattern (9 bp):
TATTCGAAT
Found at i:26812779 original size:3 final size:3
Alignment explanation
Indices: 26812771--26812870 Score: 53
Period size: 3 Copynumber: 32.3 Consensus size: 3
26812761 AATATTTATA
* * *
26812771 AAT AAT AAT AGT AA- ATAT AAT AAT AAT AAT ATT AAGT -AT AGT -AT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT
* * * *
26812815 AAAT AAT ATGT ACAT AAC AGT AAT AAT AAT AAGT AAC AAT AAT AAT AAT
1 -AAT AAT A-AT A-AT AAT AAT AAT AAT AAT AA-T AAT AAT AAT AAT AAT
*
26812864 AGT AAT A
1 AAT AAT A
26812871 TAGAAATTCA
Statistics
Matches: 72, Mismatches: 17, Indels: 16
0.69 0.16 0.15
Matches are distributed among these distances:
2 3 0.04
3 58 0.81
4 11 0.15
ACGTcount: A:0.58, C:0.03, G:0.07, T:0.32
Consensus pattern (3 bp):
AAT
Done.