Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 85 of 297
Found at i:30639243 original size:40 final size:39
Alignment explanation
Indices: 30639159--30639313 Score: 177
Period size: 40 Copynumber: 3.9 Consensus size: 39
30639149 TCGAATGATG
* * * *
30639159 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
30639199 TCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
30639239 TCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
*
30639278 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTAC
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGCGAGTTAC
30639314 ATGTTTTAAG
Statistics
Matches: 97, Mismatches: 15, Indels: 6
0.82 0.13 0.05
Matches are distributed among these distances:
39 34 0.35
40 56 0.58
41 7 0.07
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:30639295 original size:79 final size:80
Alignment explanation
Indices: 30639159--30639313 Score: 199
Period size: 79 Copynumber: 1.9 Consensus size: 80
30639149 TCGAATGATG
* *
30639159 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
30639224 GTGAGAGTTACTAAT
66 GTGAGAGTTACTAAT
* * * **
30639239 TCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGC-TTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCAT
*
30639301 TTGTGCGAGTTAC
64 TTGTGAGAGTTAC
30639314 ATGTTTTAAG
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
78 1 0.02
79 47 0.72
80 17 0.26
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.25
Consensus pattern (80 bp):
TCCGGGCTAAGTCCCGAAGGCTTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATTT
GTGAGAGTTACTAAT
Found at i:30639565 original size:310 final size:310
Alignment explanation
Indices: 30639003--30639623 Score: 1224
Period size: 310 Copynumber: 2.0 Consensus size: 310
30638993 TTGATTAGAT
30639003 CATGTTTTAAGCAAATCAAAATCATGCTCTTTGTGTGTGGCTATTGAGCCGAAATTGCAAGAATG
1 CATGTTTTAAGCAAATCAAAATCATGCTCTTTGTGTGTGGCTATTGAGCCGAAATTGCAAGAATG
30639068 ATAAGTGTCTTGTGTTTGAGTTTTGCTAATGAAAATGAAATACGAATGTGTCATGATTTATTGTT
66 ATAAGTGTCTTGTGTTTGAGTTTTGCTAATGAAAATGAAATACGAATGTGTCATGATTTATTGTT
30639133 AAATGTGCATGGTTATTCGAATGATGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAT
131 AAATGTGCATGGTTATTCGAATGATGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAT
30639198 ATCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
196 ATCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
30639263 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA
261 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA
30639313 CATGTTTTAAGCAAATCAAAATCATGCTCTTTGTGTGTGGCTATTGAGCCGAAATTGCAAGAATG
1 CATGTTTTAAGCAAATCAAAATCATGCTCTTTGTGTGTGGCTATTGAGCCGAAATTGCAAGAATG
30639378 ATAAGTGTCTTGTGTTTGAGTTTTGCTAATGAAAATGAAATACGAATGTGTCATGATTTATTGTT
66 ATAAGTGTCTTGTGTTTGAGTTTTGCTAATGAAAATGAAATACGAATGTGTCATGATTTATTGTT
30639443 AAATGTGCATGGTTATTCGAATGATGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAT
131 AAATGTGCATGGTTATTCGAATGATGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAT
*
30639508 ATCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACTAATTCCGGGCTAAGCCCGAAGGTATTG
196 ATCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
*
30639573 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTA
261 GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA
30639623 C
1 C
30639624 TATAACCGGG
Statistics
Matches: 309, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
310 309 1.00
ACGTcount: A:0.27, C:0.16, G:0.25, T:0.32
Consensus pattern (310 bp):
CATGTTTTAAGCAAATCAAAATCATGCTCTTTGTGTGTGGCTATTGAGCCGAAATTGCAAGAATG
ATAAGTGTCTTGTGTTTGAGTTTTGCTAATGAAAATGAAATACGAATGTGTCATGATTTATTGTT
AAATGTGCATGGTTATTCGAATGATGTCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGTGACCAT
ATCCGGACTAAGATCCGAAGGCATTTGTGAGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTG
GTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTA
Found at i:30639581 original size:39 final size:40
Alignment explanation
Indices: 30639469--30639653 Score: 184
Period size: 40 Copynumber: 4.7 Consensus size: 40
30639459 TCGAATGATG
* *
30639469 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTA-AGTGAC-CAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTG--AGAGTTACTAAT
*
30639508 ATCCGGACTAAGAT-CCGAAGGCATTTGTGAGAGTTACTAAT
1 -TCCGGGCTAAG-TCCCGAAGGCATTTGTGAGAGTTACTAAT
* * * *
30639549 TCCGGGCTAAG-CCCGAAGGTATTGGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAT
* *
30639588 TCCGGGTTAAGTCCCGAAGGCATTTGTGTGAGTTACT-AT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAT
* *
30639627 AACCGGGCTATGTCCCGAAGGCATTTG
1 -TCCGGGCTAAGTCCCGAAGGCATTTG
30639654 AACGAGTAGC
Statistics
Matches: 122, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
39 35 0.29
40 78 0.64
41 9 0.07
ACGTcount: A:0.24, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGAGAGTTACTAAT
Found at i:30639675 original size:79 final size:79
Alignment explanation
Indices: 30639522--30639676 Score: 190
Period size: 79 Copynumber: 2.0 Consensus size: 79
30639512 GGACTAAGAT
* * **
30639522 CCGAAGGCATTTGTGAGAGTTACTAATTCCGGGCTAAGCCCGAAGGTATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
30639587 ATCCGGGTTAAGTC
66 ATCCGGGTTAAGTC
* * *
30639601 CCGAAGGCATTTGTGTGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGAGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
*
30639664 TATATCC-GGTTAA
63 TAAATCCGGGTTAA
30639677 ATTCTGAAGG
Statistics
Matches: 65, Mismatches: 8, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
78 2 0.03
79 40 0.62
80 23 0.35
ACGTcount: A:0.26, C:0.19, G:0.28, T:0.27
Consensus pattern (79 bp):
CCGAAGGCATTTGTGAGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAGTC
Found at i:30646416 original size:27 final size:27
Alignment explanation
Indices: 30646381--30646492 Score: 93
Period size: 27 Copynumber: 4.1 Consensus size: 27
30646371 AGCATGGCTG
*
30646381 CCAGAACAGATAAT-GTGACAGAGTCA
1 CCAGAACAGATAATCGTGACAGAGCCA
*
30646407 CCAGATACAGATAATCGTGGCAGAGCCA
1 CCAGA-ACAGATAATCGTGACAGAGCCA
* * * *
30646435 CCAGAATAGA-AATATGTGGCAGAGCGA
1 CCAGAACAGATAAT-CGTGACAGAGCCA
* * * * *
30646462 CCAGATCAAATAATTGTGGCATAGCCA
1 CCAGAACAGATAATCGTGACAGAGCCA
30646489 CCAG
1 CCAG
30646493 GACGCTTCCC
Statistics
Matches: 72, Mismatches: 10, Indels: 7
0.81 0.11 0.08
Matches are distributed among these distances:
26 8 0.11
27 46 0.64
28 18 0.25
ACGTcount: A:0.38, C:0.21, G:0.24, T:0.16
Consensus pattern (27 bp):
CCAGAACAGATAATCGTGACAGAGCCA
Found at i:30653514 original size:27 final size:27
Alignment explanation
Indices: 30653483--30653552 Score: 95
Period size: 27 Copynumber: 2.6 Consensus size: 27
30653473 AACATGTCAA
*
30653483 GAAAGAAAAGTCTTTGTGGCGTAAAAT
1 GAAAGAAAAGCCTTTGTGGCGTAAAAT
* *
30653510 GAAAGAAAAGCCTTTGTGGCTTAATAT
1 GAAAGAAAAGCCTTTGTGGCGTAAAAT
* *
30653537 CAAAAAAAAGCCTTTG
1 GAAAGAAAAGCCTTTG
30653553 AGGAAAAAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 38 1.00
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.26
Consensus pattern (27 bp):
GAAAGAAAAGCCTTTGTGGCGTAAAAT
Found at i:30659406 original size:27 final size:26
Alignment explanation
Indices: 30659358--30659417 Score: 75
Period size: 27 Copynumber: 2.3 Consensus size: 26
30659348 GCGAGGCTGC
*
30659358 CAGATATTGTGACGAAGTCACCAGATA
1 CAGATATTGTGACGAAGCCACCAGA-A
* * *
30659385 CAGATATTGTGGCTAGGCCACCAGAA
1 CAGATATTGTGACGAAGCCACCAGAA
30659411 CAGATAT
1 CAGATAT
30659418 ATATATGTGG
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.35, C:0.20, G:0.23, T:0.22
Consensus pattern (26 bp):
CAGATATTGTGACGAAGCCACCAGAA
Found at i:30662831 original size:27 final size:27
Alignment explanation
Indices: 30662801--30662962 Score: 193
Period size: 27 Copynumber: 6.0 Consensus size: 27
30662791 ATCGGTAGTC
* *
30662801 CTACCCTACAGAGGTATTTTAGTAAAT
1 CTACCCTACAGAGGTATTTCAGTAATT
*
30662828 CTACCCTACA-AGGGTATTTCGGTAATT
1 CTACCCTACAGA-GGTATTTCAGTAATT
* *
30662855 CTACCTTACAGGGGTATTTCAGTAATT
1 CTACCCTACAGAGGTATTTCAGTAATT
* *
30662882 CTACCCAACA-AGGGTATTTCGGTAATT
1 CTACCCTACAGA-GGTATTTCAGTAATT
* * *
30662909 CTACCTTACAGGGGTATTTCATTAATT
1 CTACCCTACAGAGGTATTTCAGTAATT
*
30662936 CTACCCTACAGGGGTATTTCAGTAATT
1 CTACCCTACAGAGGTATTTCAGTAATT
30662963 TTACAATCGA
Statistics
Matches: 114, Mismatches: 17, Indels: 8
0.82 0.12 0.06
Matches are distributed among these distances:
26 1 0.01
27 113 0.99
ACGTcount: A:0.28, C:0.20, G:0.17, T:0.35
Consensus pattern (27 bp):
CTACCCTACAGAGGTATTTCAGTAATT
Found at i:30662843 original size:54 final size:54
Alignment explanation
Indices: 30662792--30662962 Score: 252
Period size: 54 Copynumber: 3.2 Consensus size: 54
30662782 TAGGGGTAAA
* * * * * *
30662792 TCGGTAGTCCTACCCTACAGAGGTATTTTAGTAAATCTACCCTACAAGGGTATT
1 TCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATT
*
30662846 TCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCAACAAGGGTATT
1 TCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATT
* *
30662900 TCGGTAATTCTACCTTACAGGGGTATTTCATTAATTCTACCCTACAGGGGTATT
1 TCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATT
*
30662954 TCAGTAATT
1 TCGGTAATT
30662963 TTACAATCGA
Statistics
Matches: 106, Mismatches: 11, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 106 1.00
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (54 bp):
TCGGTAATTCTACCTTACAGGGGTATTTCAGTAATTCTACCCTACAAGGGTATT
Found at i:30662924 original size:81 final size:81
Alignment explanation
Indices: 30662813--30662962 Score: 228
Period size: 81 Copynumber: 1.9 Consensus size: 81
30662803 ACCCTACAGA
* * *
30662813 GGTATTTTAGTAAATCTACCCTACAAGGGTATTTCGGTAATTCTACCTTACAGGGGTATTTCAGT
1 GGTATTTCAGTAAATCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGT
30662878 AATTCTACCCAACAAG
66 AATTCTACCCAACAAG
* * * * *
30662894 GGTATTTCGGTAATTCTACCTTACAGGGGTATTTCATTAATTCTACCCTACAGGGGTATTTCAGT
1 GGTATTTCAGTAAATCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGT
30662959 AATT
66 AATT
30662963 TTACAATCGA
Statistics
Matches: 61, Mismatches: 8, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
81 61 1.00
ACGTcount: A:0.27, C:0.19, G:0.18, T:0.36
Consensus pattern (81 bp):
GGTATTTCAGTAAATCTACCCTACAAGGGTATTTCAGTAATTCTACCCTACAGGGGTATTTCAGT
AATTCTACCCAACAAG
Found at i:30663006 original size:27 final size:26
Alignment explanation
Indices: 30662948--30663048 Score: 78
Period size: 27 Copynumber: 3.8 Consensus size: 26
30662938 ACCCTACAGG
** *
30662948 GGTATTTCAGTAATTTTAC-AATCGAT
1 GGTATTTTGGTAATTTTACAAATC-AA
30662974 GGTATTTTGGTAATTTTACAAATCAA
1 GGTATTTTGGTAATTTTACAAATCAA
* * * * **
30663000 GGATATTTGGGTGATTTTATAAACCGGG
1 GG-TATTTTGGTAATTTTACAAATC-AA
*
30663028 GGTACTTTGGTAATTTTACAA
1 GGTATTTTGGTAATTTTACAA
30663049 CTGGGGGTAT
Statistics
Matches: 59, Mismatches: 13, Indels: 5
0.77 0.17 0.06
Matches are distributed among these distances:
26 20 0.34
27 37 0.63
28 2 0.03
ACGTcount: A:0.30, C:0.09, G:0.21, T:0.41
Consensus pattern (26 bp):
GGTATTTTGGTAATTTTACAAATCAA
Found at i:30663066 original size:26 final size:27
Alignment explanation
Indices: 30662946--30663069 Score: 94
Period size: 26 Copynumber: 4.7 Consensus size: 27
30662936 CTACCCTACA
*
30662946 GGGGTATTTCAGTAATTTTACAA-TCG
1 GGGGTATTTCGGTAATTTTACAACTCG
** * * *
30662972 ATGGTATTTTGGTAATTTTACAAATCA
1 GGGGTATTTCGGTAATTTTACAACTCG
* * * * *
30662999 AGGATATTTGGGTGATTTTATAAAC-CG
1 GGGGTATTTCGGTAATTTTA-CAACTCG
30663026 GGGGTACTTT-GGTAATTTTACAACT-G
1 GGGGTA-TTTCGGTAATTTTACAACTCG
*
30663052 GGGGTATTTCAGTAATTT
1 GGGGTATTTCGGTAATTT
30663070 GGTAAACTAA
Statistics
Matches: 76, Mismatches: 17, Indels: 10
0.74 0.17 0.10
Matches are distributed among these distances:
25 3 0.04
26 36 0.47
27 32 0.42
28 5 0.07
ACGTcount: A:0.27, C:0.09, G:0.23, T:0.40
Consensus pattern (27 bp):
GGGGTATTTCGGTAATTTTACAACTCG
Found at i:30668652 original size:42 final size:43
Alignment explanation
Indices: 30668591--30668697 Score: 137
Period size: 42 Copynumber: 2.5 Consensus size: 43
30668581 ATATGTGTTC
* * * *
30668591 TCGTGTAAGACCACATCTGGTACATTGGCATC-ATATTTGCTT
1 TCGTGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATT
30668633 TCGTGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATT
1 TCGTGTAAGACCAC-GTCTGGGACAGTGGCATCGATATTTGATT
* *
30668676 ACATGTAAGACCACGTCTGGGA
1 TCGTGTAAGACCACGTCTGGGA
30668698 TGTTGGCATT
Statistics
Matches: 56, Mismatches: 6, Indels: 5
0.84 0.09 0.07
Matches are distributed among these distances:
41 1 0.02
42 27 0.48
43 27 0.48
44 1 0.02
ACGTcount: A:0.24, C:0.21, G:0.24, T:0.31
Consensus pattern (43 bp):
TCGTGTAAGACCACGTCTGGGACAGTGGCATCGATATTTGATT
Found at i:30668684 original size:43 final size:42
Alignment explanation
Indices: 30668594--30668697 Score: 129
Period size: 43 Copynumber: 2.5 Consensus size: 42
30668584 TGTGTTCTCG
* * * * * *
30668594 TGTAAGACCACATCTGGTACATTGGCATCATATTTGCTTTCG
1 TGTAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACA
30668636 TGTAAGACC-CTGTCTGGGACAGTGGCATCGATATTTGATTACA
1 TGTAAGACCAC-GTCTGGGACAGTGGCATC-ATATTTGATTACA
30668679 TGTAAGACCACGTCTGGGA
1 TGTAAGACCACGTCTGGGA
30668698 TGTTGGCATT
Statistics
Matches: 53, Mismatches: 6, Indels: 5
0.83 0.09 0.08
Matches are distributed among these distances:
41 1 0.02
42 24 0.45
43 27 0.51
44 1 0.02
ACGTcount: A:0.25, C:0.20, G:0.24, T:0.31
Consensus pattern (42 bp):
TGTAAGACCACGTCTGGGACAGTGGCATCATATTTGATTACA
Found at i:30685369 original size:42 final size:42
Alignment explanation
Indices: 30685324--30685472 Score: 167
Period size: 42 Copynumber: 3.5 Consensus size: 42
30685314 TGAGTTTACG
* **
30685324 TGTAAGACCATATATGGGATATGGCATC-ATTATGAGATTTTG
1 TGTAAGACCATATCTGGGATATGGCATCGA-TATGAGATTTCA
* * *
30685366 TGTAAGACCATGTCTGGGACATGGCATCGATATGAGA-ATCA
1 TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
* * * **
30685407 TGTAAGACCATAGCTAGGCTATTGGCATCGATATGAGATCCCA
1 TGTAAGACCATATCTGGGATA-TGGCATCGATATGAGATTTCA
30685450 TGTAAGACCATATCTGGGATATG
1 TGTAAGACCATATCTGGGATATG
30685473 TCATTGGTAT
Statistics
Matches: 88, Mismatches: 16, Indels: 6
0.80 0.15 0.05
Matches are distributed among these distances:
41 17 0.19
42 50 0.57
43 21 0.24
ACGTcount: A:0.31, C:0.15, G:0.25, T:0.29
Consensus pattern (42 bp):
TGTAAGACCATATCTGGGATATGGCATCGATATGAGATTTCA
Found at i:30690806 original size:47 final size:47
Alignment explanation
Indices: 30690748--30690877 Score: 179
Period size: 47 Copynumber: 2.8 Consensus size: 47
30690738 GTGCAAATAA
* * *
30690748 TACCTTGATTTGGCTACGGGCCATGGTATAGGTATTCAGAGAGGAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGT
* * * *
30690795 TACCTTGATTTGGCTATGGGCCATGGTATAGTTACTCCGGGATAAGT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGT
* *
30690842 TACCTTGATTTGGCTATAGGCCATGGTATAAGTACT
1 TACCTTGATTTGGCTATGGGCCATGGTATAGGTACT
30690878 TATCAATTGA
Statistics
Matches: 73, Mismatches: 10, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
47 73 1.00
ACGTcount: A:0.23, C:0.16, G:0.28, T:0.33
Consensus pattern (47 bp):
TACCTTGATTTGGCTATGGGCCATGGTATAGGTACTCAGAGAGAAGT
Found at i:30696223 original size:28 final size:28
Alignment explanation
Indices: 30696191--30696343 Score: 229
Period size: 28 Copynumber: 5.5 Consensus size: 28
30696181 ACTTGATATT
*
30696191 TCGCACACTAAGTTCCATAC-CAAATGTC
1 TCGCACACTAAGTGCCATACTC-AATGTC
* *
30696219 TCGCACACTAAGTGTCATATTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
*
30696247 TCACACACTAAGTGCCATACTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
*
30696275 TCACACACTAAGTGCCATACTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
30696303 TCGCACACTAAGTGCC-TACTCAATGTC
1 TCGCACACTAAGTGCCATACTCAATGTC
*
30696330 TTGCACACTAAGTG
1 TCGCACACTAAGTG
30696344 TCGTATATAG
Statistics
Matches: 116, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
27 24 0.21
28 91 0.78
29 1 0.01
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.27
Consensus pattern (28 bp):
TCGCACACTAAGTGCCATACTCAATGTC
Found at i:30709235 original size:39 final size:39
Alignment explanation
Indices: 30709176--30709252 Score: 145
Period size: 39 Copynumber: 2.0 Consensus size: 39
30709166 GTCACCACAA
*
30709176 AACCATCCCGTTGAACAATTCGGATTAATCCTCGATACG
1 AACCATCCCGTTGAAAAATTCGGATTAATCCTCGATACG
30709215 AACCATCCCGTTGAAAAATTCGGATTAATCCTCGATAC
1 AACCATCCCGTTGAAAAATTCGGATTAATCCTCGATAC
30709253 TTGATGGTTT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.32, C:0.27, G:0.14, T:0.26
Consensus pattern (39 bp):
AACCATCCCGTTGAAAAATTCGGATTAATCCTCGATACG
Found at i:30728076 original size:21 final size:21
Alignment explanation
Indices: 30728051--30728091 Score: 82
Period size: 21 Copynumber: 2.0 Consensus size: 21
30728041 CATTGATTTA
30728051 GTAAATTAGTTTATGAAATTC
1 GTAAATTAGTTTATGAAATTC
30728072 GTAAATTAGTTTATGAAATT
1 GTAAATTAGTTTATGAAATT
30728092 AGAATATGCA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.39, C:0.02, G:0.15, T:0.44
Consensus pattern (21 bp):
GTAAATTAGTTTATGAAATTC
Found at i:30728835 original size:39 final size:39
Alignment explanation
Indices: 30728717--30728838 Score: 199
Period size: 39 Copynumber: 3.1 Consensus size: 39
30728707 GTTCAATATT
*
30728717 TGGAAACATATCAGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
* * **
30728756 TAGAAACATATCCGAACTTGAGGTCTACAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
30728795 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
30728834 TGGAA
1 TGGAA
30728839 TATATCCAGG
Statistics
Matches: 74, Mismatches: 9, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 74 1.00
ACGTcount: A:0.27, C:0.23, G:0.29, T:0.21
Consensus pattern (39 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTGC
Found at i:30735455 original size:39 final size:38
Alignment explanation
Indices: 30735400--30735490 Score: 130
Period size: 39 Copynumber: 2.4 Consensus size: 38
30735390 GCATGATATT
* *
30735400 TGGAAACATATTCGGACTTGAGGTCTGCAAGCTACGTGC
1 TGGAAACATATCCGGACTTGAGGTCCGCAAGCTACGT-C
*
30735439 TGGAAACATATCCGGACTTGAGGTCCGCAGGCTACGTC
1 TGGAAACATATCCGGACTTGAGGTCCGCAAGCTACGTC
*
30735477 TGG-AATATATCCGG
1 TGGAAACATATCCGG
30735491 GCCTAAAGTC
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
37 10 0.21
38 4 0.08
39 34 0.71
ACGTcount: A:0.25, C:0.22, G:0.29, T:0.24
Consensus pattern (38 bp):
TGGAAACATATCCGGACTTGAGGTCCGCAAGCTACGTC
Found at i:30741563 original size:358 final size:355
Alignment explanation
Indices: 30740906--30741958 Score: 1460
Period size: 358 Copynumber: 3.0 Consensus size: 355
30740896 AGTTAAATTT
* *
30740906 TAGCACT-ACGTTTCACCCTCGACTGATGGCCAACCAAAAAGAGTTATTCAGGTCTTAGAGGATA
1 TAGCACTGA-GTTTCACCCTCGACTGATGG-CAATCAAAAAAAGTTATTCAGGTCTTAGAGGATA
* * *
30740970 TAATGCGTTCCTGTGTGATTGACTTTGGAATAAATTGGGAGAAGTATGTCCCTCTAGTTGAATTC
64 TAATGCGTTTCTGTGTGATTGATTTTGGAATAAACTGGGAGAAGTATGTCCCTCTAGTTGAATTC
* ** * *
30741035 TCCTATAATAACAGTTACCATGTAAACCTGAAGATGTCTCCATTCGAAGCCTTGTATGGTAGAAG
129 TCCTATAATAATAGTTACCACATCAGCCTGAAGATGTCTCCATTCGAAGCCTTGTATGGTAGAAG
* * * *
30741100 GTGTAGGACACCTGCCTATTTGATAGAATTGAGCGAAAGAAAGATAATGGATCCAAACATAGTAC
194 GTGTAGGACACCTACCTATTGGA-AGAATTGAGCGAAAGAAAGATAGTGGGTCCAAAC-TAGTAC
* * * *
30741165 GTGAAATAGAAGAGAAAGCTGCCATCATCCATAGTCACTTAAAAACTACACAGGACCAACAGAAA
257 GTGAAACAGAAGAGAAAGTTGCCATCATCCATAGTCACTTAAAAACTATACAGGACCGACAGAAA
*
30741230 TCATATACAAATTTAAAAATGACAGACAAAAATC
322 TCATATACAAATTTAAAAAAGACAGACAAAAATC
*
30741264 TAGCACTGAGTTTCACCCTCGACTGAAGGCTAATCAAAAAAAGTTATTCAGGTCTTAGAGGATAT
1 TAGCACTGAGTTTCACCCTCGACTGATGGC-AATCAAAAAAAGTTATTCAGGTCTTAGAGGATAT
* * * *
30741329 AATGCATTTCTGTGTGATTGATTTTGGAATAAACTAGGAAAAGTATGTCCCTCTGGTTGAATTCT
65 AATGCGTTTCTGTGTGATTGATTTTGGAATAAACTGGGAGAAGTATGTCCCTCTAGTTGAATTCT
* * * *
30741394 CCTACAATAATAGTTACCACATCAGCCTGAAGATGTCTCCATTTGAGGCCTTGTATGGTAGAAGA
130 CCTATAATAATAGTTACCACATCAGCCTGAAGATGTCTCCATTCGAAGCCTTGTATGGTAGAAGG
*
30741459 TGTAGGACACCTA-CTCATTGGAAGAAATTGAGCGAAAGAAAGATAGTGGGTCCAAACTCAGTAT
195 TGTAGGACACCTACCT-ATTGGAAG-AATTGAGCGAAAGAAAGATAGTGGGTCCAAACT-AGTAC
* * * *
30741523 GTTAAACAGAGGAGAAAGTTGTCATCATCCATAGTCACTTAAAAACTATACAGGACCGATAGAAA
257 GTGAAACAGAAGAGAAAGTTGCCATCATCCATAGTCACTTAAAAACTATACAGGACCGACAGAAA
* * * *
30741588 TCATATACAGATTTAAAAAAGACTGCCAAAAATT
322 TCATATACAAATTTAAAAAAGACAGACAAAAATC
* * *
30741622 TAGCACTGCA-TTTCACCCTTGACTGATGGACAATCAGAAAAAGTTATTTAGGTCTTAGAGGATA
1 TAGCACTG-AGTTTCACCCTCGACTGATGG-CAATCAAAAAAAGTTATTCAGGTCTTAGAGGATA
* * * * *
30741686 TAACGTGTTTCTGTGTGAGTGATTTAGGAATAAACTGGGAGAAGTATGTCCTTCTAGTTGAATTC
64 TAATGCGTTTCTGTGTGATTGATTTTGGAATAAACTGGGAGAAGTATGTCCCTCTAGTTGAATTC
30741751 TCCTATAATAATTA-TTACCACATCAGCCTGAAGATGTCTCCATTCGAAGCC-----T-GTAGAA
129 TCCTATAATAA-TAGTTACCACATCAGCCTGAAGATGTCTCCATTCGAAGCCTTGTATGGTAGAA
* ** *
30741809 GGTGTAGGACACCTACCTATTGGATGGAATTGAGAAAAAGAAAGATAGTGGGTCCAAACTTGGTA
193 GGTGTAGGACACCTACCTATTGGA-AGAATTGAGCGAAAGAAAGATAGTGGGTCCAAAC-TAGTA
* *
30741874 CGTGAAACAGAAGAGAAAGTTGCCATCATCCATAGTCACTTAAAAACTATACATGACCGACATAA
256 CGTGAAACAGAAGAGAAAGTTGCCATCATCCATAGTCACTTAAAAACTATACAGGACCGACAGAA
30741939 ATCATATACAAATTTAAAAA
321 ATCATATACAAATTTAAAAA
30741959 GGAACTTGAG
Statistics
Matches: 618, Mismatches: 66, Indels: 28
0.87 0.09 0.04
Matches are distributed among these distances:
352 136 0.22
353 5 0.01
357 6 0.01
358 466 0.75
359 5 0.01
ACGTcount: A:0.36, C:0.17, G:0.20, T:0.27
Consensus pattern (355 bp):
TAGCACTGAGTTTCACCCTCGACTGATGGCAATCAAAAAAAGTTATTCAGGTCTTAGAGGATATA
ATGCGTTTCTGTGTGATTGATTTTGGAATAAACTGGGAGAAGTATGTCCCTCTAGTTGAATTCTC
CTATAATAATAGTTACCACATCAGCCTGAAGATGTCTCCATTCGAAGCCTTGTATGGTAGAAGGT
GTAGGACACCTACCTATTGGAAGAATTGAGCGAAAGAAAGATAGTGGGTCCAAACTAGTACGTGA
AACAGAAGAGAAAGTTGCCATCATCCATAGTCACTTAAAAACTATACAGGACCGACAGAAATCAT
ATACAAATTTAAAAAAGACAGACAAAAATC
Found at i:30744963 original size:64 final size:64
Alignment explanation
Indices: 30744847--30744966 Score: 154
Period size: 64 Copynumber: 1.9 Consensus size: 64
30744837 ATCTCCCTAG
* *
30744847 AGGTTTTCTTAATTGATCCGCTACATCAGGAGGACCCTATGGCACATCAAGACCATTTCCCCAC
1 AGGTTATCTTAATTGATCCGCTACATCAGGAAGACCCTATGGCACATCAAGACCATTTCCCCAC
* * * *
30744911 AGGTTATCTTAGTTGATTCGCTACATCATGAAGATCCTA-GGC-CATGCTAAGACCAT
1 AGGTTATCTTAATTGATCCGCTACATCAGGAAGACCCTATGGCACAT-C-AAGACCAT
30744967 CCAAGTTGAT
Statistics
Matches: 48, Mismatches: 6, Indels: 4
0.83 0.10 0.07
Matches are distributed among these distances:
62 3 0.06
63 4 0.08
64 41 0.85
ACGTcount: A:0.28, C:0.26, G:0.18, T:0.28
Consensus pattern (64 bp):
AGGTTATCTTAATTGATCCGCTACATCAGGAAGACCCTATGGCACATCAAGACCATTTCCCCAC
Found at i:30745015 original size:13 final size:13
Alignment explanation
Indices: 30744999--30745033 Score: 61
Period size: 13 Copynumber: 2.7 Consensus size: 13
30744989 TCACCCTAGT
30744999 CGATCATCTTTTA
1 CGATCATCTTTTA
30745012 CGATCATCTTTTA
1 CGATCATCTTTTA
*
30745025 CAATCATCT
1 CGATCATCT
30745034 CAATGGATTA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 21 1.00
ACGTcount: A:0.26, C:0.26, G:0.06, T:0.43
Consensus pattern (13 bp):
CGATCATCTTTTA
Found at i:30745295 original size:47 final size:48
Alignment explanation
Indices: 30745222--30745315 Score: 120
Period size: 47 Copynumber: 2.0 Consensus size: 48
30745212 CCACCCTCAA
*
30745222 AAAATATAATAAAATAAGAATAAAAACACATATTATATATACATAACT
1 AAAATATAAAAAAATAAGAATAAAAACACATATTATATATACATAACT
* ** *
30745270 AAAATA-AAAAAAATGAA-AATGAAAACATGTATTATTTATACATAAC
1 AAAATATAAAAAAAT-AAGAATAAAAACACATATTATATATACATAAC
30745316 CAATTGAAAA
Statistics
Matches: 40, Mismatches: 5, Indels: 3
0.83 0.10 0.06
Matches are distributed among these distances:
47 32 0.80
48 8 0.20
ACGTcount: A:0.62, C:0.07, G:0.04, T:0.27
Consensus pattern (48 bp):
AAAATATAAAAAAATAAGAATAAAAACACATATTATATATACATAACT
Found at i:30755522 original size:24 final size:23
Alignment explanation
Indices: 30755492--30755568 Score: 68
Period size: 24 Copynumber: 3.3 Consensus size: 23
30755482 TTAATTTAGG
30755492 TGATTTTATAATTGCTTTAATACA
1 TGATTTTATAATT-CTTTAATACA
* * * *
30755516 TGATTTTAT--GTCTAATTGATGCT
1 TGATTTTATAATTCT--TTAATACA
30755539 TGATTTTATAATTTCTTTAATACA
1 TGATTTTATAA-TTCTTTAATACA
30755563 TGATTT
1 TGATTT
30755569 GACTAAAAGA
Statistics
Matches: 40, Mismatches: 8, Indels: 10
0.69 0.14 0.17
Matches are distributed among these distances:
21 2 0.05
22 1 0.03
23 14 0.35
24 20 0.50
26 3 0.08
ACGTcount: A:0.29, C:0.08, G:0.10, T:0.53
Consensus pattern (23 bp):
TGATTTTATAATTCTTTAATACA
Found at i:30756900 original size:7 final size:7
Alignment explanation
Indices: 30756885--30756924 Score: 71
Period size: 7 Copynumber: 5.7 Consensus size: 7
30756875 CCTAGATGAA
30756885 TTGGGCT
1 TTGGGCT
*
30756892 TTAGGCT
1 TTGGGCT
30756899 TTGGGCT
1 TTGGGCT
30756906 TTGGGCT
1 TTGGGCT
30756913 TTGGGCT
1 TTGGGCT
30756920 TTGGG
1 TTGGG
30756925 TTTCATAAAA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
7 31 1.00
ACGTcount: A:0.03, C:0.12, G:0.42, T:0.42
Consensus pattern (7 bp):
TTGGGCT
Found at i:30781864 original size:28 final size:27
Alignment explanation
Indices: 30781798--30781867 Score: 106
Period size: 27 Copynumber: 2.6 Consensus size: 27
30781788 ATATTAAGTC
30781798 CGCACA-CTCAGTGCTATATAATCAACT
1 CGCACACCT-AGTGCTATATAATCAACT
*
30781825 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACCTAGTGCTATATAATC-AACT
30781853 CGCACACCTAGTGCT
1 CGCACACCTAGTGCT
30781868 GTACAATTTA
Statistics
Matches: 39, Mismatches: 2, Indels: 3
0.89 0.05 0.07
Matches are distributed among these distances:
27 20 0.51
28 19 0.49
ACGTcount: A:0.31, C:0.30, G:0.13, T:0.26
Consensus pattern (27 bp):
CGCACACCTAGTGCTATATAATCAACT
Found at i:30782122 original size:306 final size:306
Alignment explanation
Indices: 30781569--30782173 Score: 1129
Period size: 306 Copynumber: 2.0 Consensus size: 306
30781559 TTTATTTTCG
30781569 TTACAATCATACAACTAAACGACCTTTCACCTATTCCACGATAAATCTTATGTACGTGACTTCAA
1 TTACAATCATACAACTAAACGACCTTTCACCTATTCCACGATAAATCTTATGTACGTGACTTCAA
30781634 TTATAATTGTCACATAGGTTCAAACTTACCAAGCTCAACTCCAAATATAAACATAGCGCCTATTA
66 TTATAATTGTCACATAGGTTCAAACTTACCAAGCTCAACTCCAAATATAAACATAGCGCCTATTA
*
30781699 GCCATGAACTCAAGGTACTTACCCGATCCGCTGTCCGTGATCAACTCAATAATGTCGCACACTTA
131 GCCACGAACTCAAGGTACTTACCCGATCCGCTGTCCGTGATCAACTCAATAATGTCGCACACTTA
30781764 GTGTCCATAGTGATTCAAAAGTATATATTAAGTCCGCACACTCAGTGCTATATAATCAACTCGCA
196 GTGTCCATAGTGATTCAAAAGTATATATTAAGTCCGCACACTCAGTGCTATATAATCAACTCGCA
30781829 CACTTAGTGCTATATAATCAAACTCGCACACCTAGTGCTGTACAAT
261 CACTTAGTGCTATATAATCAAACTCGCACACCTAGTGCTGTACAAT
*
30781875 TTACAATCATACAACTAAACGACCTTTCACCTATTCCATGATAAATCTTATGTACGTGACTTCAA
1 TTACAATCATACAACTAAACGACCTTTCACCTATTCCACGATAAATCTTATGTACGTGACTTCAA
* *
30781940 TTATAATTGTCACATAGGTTCAAACTTACCAAGCTCAACTTCAAATATAAACATAGCGCTTATTA
66 TTATAATTGTCACATAGGTTCAAACTTACCAAGCTCAACTCCAAATATAAACATAGCGCCTATTA
* * * *
30782005 GTCACGAACTCGAGGTACTTACCCGATCCGCTGTCCGTGATCGACTTAATAATGTCGCACACTTA
131 GCCACGAACTCAAGGTACTTACCCGATCCGCTGTCCGTGATCAACTCAATAATGTCGCACACTTA
30782070 GTGTCCATAGTGATTCAAAAGTATATATTAAGTCCGCACACTCAGTGCTATATAATCAACTCGCA
196 GTGTCCATAGTGATTCAAAAGTATATATTAAGTCCGCACACTCAGTGCTATATAATCAACTCGCA
*
30782135 CACTTAGTGCTATATAATCAAACTCGCACACTTAGTGCT
261 CACTTAGTGCTATATAATCAAACTCGCACACCTAGTGCT
30782174 ACATAATCAA
Statistics
Matches: 290, Mismatches: 9, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
306 290 1.00
ACGTcount: A:0.33, C:0.25, G:0.13, T:0.29
Consensus pattern (306 bp):
TTACAATCATACAACTAAACGACCTTTCACCTATTCCACGATAAATCTTATGTACGTGACTTCAA
TTATAATTGTCACATAGGTTCAAACTTACCAAGCTCAACTCCAAATATAAACATAGCGCCTATTA
GCCACGAACTCAAGGTACTTACCCGATCCGCTGTCCGTGATCAACTCAATAATGTCGCACACTTA
GTGTCCATAGTGATTCAAAAGTATATATTAAGTCCGCACACTCAGTGCTATATAATCAACTCGCA
CACTTAGTGCTATATAATCAAACTCGCACACCTAGTGCTGTACAAT
Found at i:30782167 original size:28 final size:28
Alignment explanation
Indices: 30782104--30782226 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
30782094 ATATTAAGTC
*
30782104 CGCACACTCAGTGCTATATAATC-AACT
1 CGCACACTTAGTGCTATATAATCAAACT
30782131 CGCACACTTAGTGCTATATAATCAAACT
1 CGCACACTTAGTGCTATATAATCAAACT
* *
30782159 CGCACACTTAGTGCTACATAATCAAGCT
1 CGCACACTTAGTGCTATATAATCAAACT
* * * *
30782187 CGCACACTTAGTGCTGTACAATTTAAACC
1 CGCACACTTAGTGCTATATAA-TCAAACT
30782216 CGCACACTTAG
1 CGCACACTTAG
30782227 CGCCAATCTC
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 22 0.26
28 48 0.56
29 15 0.18
ACGTcount: A:0.33, C:0.28, G:0.13, T:0.26
Consensus pattern (28 bp):
CGCACACTTAGTGCTATATAATCAAACT
Found at i:30782174 original size:55 final size:57
Alignment explanation
Indices: 30782103--30782226 Score: 180
Period size: 55 Copynumber: 2.2 Consensus size: 57
30782093 TATATTAAGT
* * *
30782103 CCGCACACTCAGTGCTATATAATCAA-CTCGCACACTTAGTGCTATATAA-TCAAAC
1 CCGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTATACAATTCAAAC
* * *
30782158 TCGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTGTACAATTTAAAC
1 CCGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTATACAATTCAAAC
30782215 CCGCACACTTAG
1 CCGCACACTTAG
30782227 CGCCAATCTC
Statistics
Matches: 60, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.38
56 21 0.35
57 16 0.27
ACGTcount: A:0.32, C:0.29, G:0.13, T:0.26
Consensus pattern (57 bp):
CCGCACACTTAGTGCTACATAATCAAGCTCGCACACTTAGTGCTATACAATTCAAAC
Found at i:30786853 original size:36 final size:36
Alignment explanation
Indices: 30786806--30786879 Score: 139
Period size: 36 Copynumber: 2.1 Consensus size: 36
30786796 GTTATGCGAG
30786806 TAAATTACAGTGTGAACATATGCGATGCTATTCGAT
1 TAAATTACAGTGTGAACATATGCGATGCTATTCGAT
*
30786842 TAAATTACAGTGTGAGCATATGCGATGCTATTCGAT
1 TAAATTACAGTGTGAACATATGCGATGCTATTCGAT
30786878 TA
1 TA
30786880 GATATGAAGC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.32, C:0.14, G:0.20, T:0.34
Consensus pattern (36 bp):
TAAATTACAGTGTGAACATATGCGATGCTATTCGAT
Found at i:30786981 original size:20 final size:19
Alignment explanation
Indices: 30786956--30787001 Score: 83
Period size: 20 Copynumber: 2.4 Consensus size: 19
30786946 TGGTCTGAAC
30786956 TCATGAGTTGAGTCTAAGTT
1 TCATGAGTTGAGTCTAAG-T
30786976 TCATGAGTTGAGTCTAAGT
1 TCATGAGTTGAGTCTAAGT
30786995 TCATGAG
1 TCATGAG
30787002 ATAAATGCTA
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
19 8 0.31
20 18 0.69
ACGTcount: A:0.26, C:0.11, G:0.26, T:0.37
Consensus pattern (19 bp):
TCATGAGTTGAGTCTAAGT
Found at i:30789843 original size:15 final size:15
Alignment explanation
Indices: 30789823--30789855 Score: 66
Period size: 15 Copynumber: 2.2 Consensus size: 15
30789813 TGTATTTCTT
30789823 ATTTTACTTCATGAA
1 ATTTTACTTCATGAA
30789838 ATTTTACTTCATGAA
1 ATTTTACTTCATGAA
30789853 ATT
1 ATT
30789856 CAAGTATTAT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 18 1.00
ACGTcount: A:0.33, C:0.12, G:0.06, T:0.48
Consensus pattern (15 bp):
ATTTTACTTCATGAA
Found at i:30791383 original size:16 final size:16
Alignment explanation
Indices: 30791364--30791394 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
30791354 CTTCTTCACT
30791364 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
30791380 TACTTACTTACTTAA
1 TACTCACTTACTTAA
30791395 TCAGATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:30791511 original size:23 final size:24
Alignment explanation
Indices: 30791473--30791517 Score: 74
Period size: 23 Copynumber: 1.9 Consensus size: 24
30791463 TTTGCTCTTC
*
30791473 TAGCATGAACTTGTCTTACCTTTT
1 TAGCATGAACTCGTCTTACCTTTT
30791497 TAGCAT-AACTCGTCTTACCTT
1 TAGCATGAACTCGTCTTACCTT
30791518 ACCTTACCTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
23 14 0.70
24 6 0.30
ACGTcount: A:0.22, C:0.24, G:0.11, T:0.42
Consensus pattern (24 bp):
TAGCATGAACTCGTCTTACCTTTT
Found at i:30794696 original size:12 final size:12
Alignment explanation
Indices: 30794679--30794711 Score: 57
Period size: 12 Copynumber: 2.8 Consensus size: 12
30794669 AGAAAGAAAA
*
30794679 GAGTGAAAAGGT
1 GAGTGAAAAAGT
30794691 GAGTGAAAAAGT
1 GAGTGAAAAAGT
30794703 GAGTGAAAA
1 GAGTGAAAA
30794712 TAAACGAGGG
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
12 20 1.00
ACGTcount: A:0.48, C:0.00, G:0.36, T:0.15
Consensus pattern (12 bp):
GAGTGAAAAAGT
Found at i:30819621 original size:58 final size:57
Alignment explanation
Indices: 30819546--30819730 Score: 137
Period size: 58 Copynumber: 3.2 Consensus size: 57
30819536 TTTTGTTTCT
* *
30819546 TTTTCTTTGATGAAATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTG
1 TTTTATTTAATGAAATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTG
* ** * * * * * * *
30819603 TTTTATTTAACCT-TAATCAAGCAAA-ACCAT-AGTCGAAACCCT-AAGCTTAAT-TTTGTTTCT
1 TTTTATTTAA--TGAAATC-AGCAAAGATGATGAAT--ATATCATCAA-ATTCATGTTT-TTT-G
* *
30819663 TTTTCTTTGATGAAATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTG
1 TTTTATTTAATGAAATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTG
30819720 TTTTATTTAAT
1 TTTTATTTAAT
30819731 TATCATAATA
Statistics
Matches: 89, Mismatches: 26, Indels: 26
0.63 0.18 0.18
Matches are distributed among these distances:
57 19 0.21
58 30 0.34
59 30 0.34
60 10 0.11
ACGTcount: A:0.33, C:0.13, G:0.11, T:0.43
Consensus pattern (57 bp):
TTTTATTTAATGAAATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTG
Found at i:30819642 original size:117 final size:117
Alignment explanation
Indices: 30819495--30819729 Score: 470
Period size: 117 Copynumber: 2.0 Consensus size: 117
30819485 CAAAAATCAT
30819495 ACCTTAATCAAGCAAAACCATAGTCGAAACCCTAAGCTTAATTTTGTTTCTTTTTCTTTGATGAA
1 ACCTTAATCAAGCAAAACCATAGTCGAAACCCTAAGCTTAATTTTGTTTCTTTTTCTTTGATGAA
30819560 ATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTGTTTTATTTA
66 ATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTGTTTTATTTA
30819612 ACCTTAATCAAGCAAAACCATAGTCGAAACCCTAAGCTTAATTTTGTTTCTTTTTCTTTGATGAA
1 ACCTTAATCAAGCAAAACCATAGTCGAAACCCTAAGCTTAATTTTGTTTCTTTTTCTTTGATGAA
30819677 ATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTGTTTTATTTA
66 ATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTGTTTTATTTA
30819729 A
1 A
30819730 TTATCATAAT
Statistics
Matches: 118, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
117 118 1.00
ACGTcount: A:0.34, C:0.15, G:0.11, T:0.40
Consensus pattern (117 bp):
ACCTTAATCAAGCAAAACCATAGTCGAAACCCTAAGCTTAATTTTGTTTCTTTTTCTTTGATGAA
ATCAGCAAAGATGATGAATATATCATCAAATTCATGTTTTTTGTTTTATTTA
Found at i:30820499 original size:13 final size:13
Alignment explanation
Indices: 30820481--30820512 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
30820471 GAGCACGCAT
*
30820481 AAAACATATCTTG
1 AAAACATAACTTG
30820494 AAAACATAACTTG
1 AAAACATAACTTG
30820507 AAAACA
1 AAAACA
30820513 GAGTTTTATA
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.56, C:0.16, G:0.06, T:0.22
Consensus pattern (13 bp):
AAAACATAACTTG
Found at i:30825642 original size:39 final size:39
Alignment explanation
Indices: 30825569--30825643 Score: 96
Period size: 39 Copynumber: 1.9 Consensus size: 39
30825559 ATATATATAT
* *
30825569 ATCAGGTTACTAGTCTGAGCTAAACCTATATCACAACAC
1 ATCAGGTTACTAGTCCGAGCTAAACCCATATCACAACAC
* * * *
30825608 ATCAGGTTATTCGTCCGAGCTAAACCCGTGTCACAA
1 ATCAGGTTACTAGTCCGAGCTAAACCCATATCACAA
30825644 AATGCCCACG
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
39 30 1.00
ACGTcount: A:0.32, C:0.27, G:0.16, T:0.25
Consensus pattern (39 bp):
ATCAGGTTACTAGTCCGAGCTAAACCCATATCACAACAC
Found at i:30826162 original size:68 final size:67
Alignment explanation
Indices: 30826051--30826185 Score: 216
Period size: 68 Copynumber: 2.0 Consensus size: 67
30826041 TTCCATATGA
* * *
30826051 ACTTACCTATTCAAAATGTGAAAAGAGTGGATATTTTAAGGACTAATATGCAATTTTAGTTTCTT
1 ACTTACCCATTCAAAATGTGAAAAGAGTGGATATTTCAAGGACTAATATACAATTTTAGTTTCTT
30826116 TC
66 TC
* *
30826118 NACTTACCCATTCAAAATGTGAAAAGAGTGGATATTTCAGGGACTAATATATAATTTTAGTTTCT
1 -ACTTACCCATTCAAAATGTGAAAAGAGTGGATATTTCAAGGACTAATATACAATTTTAGTTTCT
30826183 TTC
65 TTC
30826186 CCTATTAGCT
Statistics
Matches: 62, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
68 62 1.00
ACGTcount: A:0.34, C:0.13, G:0.15, T:0.38
Consensus pattern (67 bp):
ACTTACCCATTCAAAATGTGAAAAGAGTGGATATTTCAAGGACTAATATACAATTTTAGTTTCTT
TC
Found at i:30829583 original size:43 final size:43
Alignment explanation
Indices: 30829522--30829680 Score: 169
Period size: 43 Copynumber: 3.7 Consensus size: 43
30829512 CAAAGCCATA
* * *
30829522 TCCCAGATATGGTCTTACATGTTATCACATATCGATGCCACTG
1 TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
* * * * * *
30829565 TCCCAGACAGGGCCTTACATGAAATTA-ATTAACGATTCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACA-TATCGATGCCAATG
* * *
30829608 TCCCAAACATGGTCTTACACGTAATCACA-ATACAATGCCAATG
1 TCCCAGACATGGTCTTACATGTAATCACATAT-CGATGCCAATG
*
30829651 TCCAAGACATGGTCTTACATGTAATCACAT
1 TCCCAGACATGGTCTTACATGTAATCACAT
30829681 CTCGGTAACA
Statistics
Matches: 91, Mismatches: 21, Indels: 7
0.76 0.18 0.06
Matches are distributed among these distances:
42 2 0.02
43 88 0.97
44 1 0.01
ACGTcount: A:0.33, C:0.25, G:0.14, T:0.28
Consensus pattern (43 bp):
TCCCAGACATGGTCTTACATGTAATCACATATCGATGCCAATG
Found at i:30833496 original size:47 final size:47
Alignment explanation
Indices: 30833422--30833638 Score: 250
Period size: 47 Copynumber: 4.6 Consensus size: 47
30833412 GTAAGGTGCT
30833422 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGTC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTC
*
30833469 GATGTCATGTCCCAGACATGGTCTTACACTGGC-CATCATCTCATAATC
1 GATG-CATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGTC
* * * *
30833517 GATGCATGTCCTAGACAT-GTCTTACACTGGCTTA-CATCTCGAGAC
1 GATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTC
* * *
30833562 TGATGCATGTCCCAGACAT-GTCTTACACTAGCAC-TCATCT-TAGTGCC
1 -GATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT--C
30833609 GATGCCATGTCCCAGACATGGTCTTACACT
1 GATG-CATGTCCCAGACATGGTCTTACACT
30833639 AGCTTCCATA
Statistics
Matches: 148, Mismatches: 13, Indels: 17
0.83 0.07 0.10
Matches are distributed among these distances:
45 4 0.03
46 60 0.41
47 67 0.45
48 17 0.11
ACGTcount: A:0.24, C:0.29, G:0.18, T:0.29
Consensus pattern (47 bp):
GATGCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGTC
Found at i:30833665 original size:47 final size:45
Alignment explanation
Indices: 30833417--30833687 Score: 166
Period size: 47 Copynumber: 5.8 Consensus size: 45
30833407 TATGGGTAAG
* *
30833417 GTGCTGATGCCATGTCCCAGACATGGTCTTACACTGGC-T-CATAT
1 GTGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTTCCATAT
* * * *
30833461 CTCAAGTCGATGTCATGTCCCAGACATGGTCTTACACTGGCCATCATCTCATA-
1 GT---GCCGATGCCATGTCCCAGACAT-GTCTTACACTAG-C-T--TC-CATAT
* * * * *
30833514 AT--CGATG-CATGTCCTAGACATGTCTTACACTGGCTTACATCT
1 GTGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTCCATAT
* * * *
30833556 CGAGACTGATG-CATGTCCCAGACATGTCTTACACTAGC-ACTCATCTT
1 -GTG-CCGATGCCATGTCCCAGACATGTCTTACACTAGCTTC-CAT-AT
30833603 AGTGCCGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCCATAAT
1 -GTGCCGATGCCATGTCCCAGACAT-GTCTTACACTAGCTTCCAT-AT
30833651 GTGGCCGATG-CATGTCCC-GAACATGTCTTACACTAGC
1 GT-GCCGATGCCATGTCCCAG-ACATGTCTTACACTAGC
30833688 ACACACAAGT
Statistics
Matches: 183, Mismatches: 22, Indels: 42
0.74 0.09 0.17
Matches are distributed among these distances:
41 3 0.02
42 1 0.01
44 2 0.01
45 1 0.01
46 63 0.34
47 76 0.42
48 30 0.16
49 1 0.01
52 1 0.01
53 1 0.01
54 4 0.02
ACGTcount: A:0.24, C:0.29, G:0.19, T:0.28
Consensus pattern (45 bp):
GTGCCGATGCCATGTCCCAGACATGTCTTACACTAGCTTCCATAT
Found at i:30841968 original size:40 final size:40
Alignment explanation
Indices: 30841892--30842070 Score: 220
Period size: 40 Copynumber: 4.5 Consensus size: 40
30841882 ATGTCCAGGC
* * * * **
30841892 TAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGAC
1 TAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGT
30841932 TAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
30841972 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
* * *
30842012 TAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CTGCGC
1 TAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCGGGT
*
30842052 TATGTCCCGAAGGCATTTG
1 TAAGTCCCGAAGGCATTTG
30842071 AACGAGGAGC
Statistics
Matches: 125, Mismatches: 10, Indels: 8
0.87 0.07 0.06
Matches are distributed among these distances:
39 1 0.01
40 114 0.91
41 10 0.08
ACGTcount: A:0.25, C:0.21, G:0.26, T:0.27
Consensus pattern (40 bp):
TAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGT
Found at i:30842088 original size:80 final size:79
Alignment explanation
Indices: 30841890--30842103 Score: 202
Period size: 80 Copynumber: 2.7 Consensus size: 79
30841880 TGATGTCCAG
** * * * *
30841890 GCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCATTTGTG
1 GCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCATTTGTG
*
30841953 CGAGTTACTAAATCCGG
63 CGAGTTACTAAATCCGC
* ** * *
30841970 GTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTTGTGCG
1 GCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTTGTGCG
*
30842035 AGTTACTATAA-CTGC
65 AGTTACTA-AATCCGC
* * *
30842050 GCTATGTCCCGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 GCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
30842104 TACGTGATTT
Statistics
Matches: 112, Mismatches: 17, Indels: 11
0.80 0.12 0.08
Matches are distributed among these distances:
79 16 0.14
80 85 0.76
81 11 0.10
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
GCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTGTGCGA
GTTACTAAATCCGC
Found at i:30847079 original size:47 final size:48
Alignment explanation
Indices: 30847010--30847227 Score: 254
Period size: 47 Copynumber: 4.6 Consensus size: 48
30847000 GGTAAGGTAC
30847010 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCAT-ATCTCAAGT
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
* * *
30847057 CGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCATCTCGTAGC
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTC-AAGT
* * *
30847105 CGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTA-CATCTCGAGG
1 CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
* * * *
30847150 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCCTCTCAGTGT
1 C-GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCA-AGT
*
30847197 TGATGCCATGTCCCAGACATGGTCTTACACT
1 CGATGCCATGTCCCAGACATGGTCTTACACT
30847228 AGCTTCCATA
Statistics
Matches: 148, Mismatches: 15, Indels: 15
0.83 0.08 0.08
Matches are distributed among these distances:
45 3 0.02
46 60 0.41
47 68 0.46
48 17 0.11
ACGTcount: A:0.22, C:0.31, G:0.19, T:0.28
Consensus pattern (48 bp):
CGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATCATCTCAAGT
Found at i:30847145 original size:46 final size:48
Alignment explanation
Indices: 30847009--30847273 Score: 248
Period size: 47 Copynumber: 5.7 Consensus size: 48
30846999 GGGTAAGGTA
* * *
30847009 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTC-AAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAG
* * *
30847056 TCGATGCCATGTCCCAGACATGGTCTTACACTGAC-CATCATCTCGTAG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTA-CATCTCGTAG
30847104 CCGATG-CATGTCCCAGACAT-GTCTTACACTGGCTTACATCTCG-AGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTA-G
* * * *
30847150 CTGATG-CATGTCCCAGACAT-GTCTTACACTAGCACT-CCTCTCAGT-G
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGC-TTACATCTC-GTAG
** * * * *
30847196 TTGATGCCATGTCCCAGACATGGTCTTACACTAGCTTCCATAAT-GTGG
1 CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACAT-CTCGTAG
*
30847244 CCGATG-CATGTCCAAGACAT-GTCTTACACT
1 CCGATGCCATGTCCCAGACATGGTCTTACACT
30847274 AGCACACATA
Statistics
Matches: 188, Mismatches: 18, Indels: 25
0.81 0.08 0.11
Matches are distributed among these distances:
45 1 0.01
46 74 0.39
47 85 0.45
48 27 0.14
49 1 0.01
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (48 bp):
CCGATGCCATGTCCCAGACATGGTCTTACACTGGCTTACATCTCGTAG
Found at i:30847268 original size:140 final size:141
Alignment explanation
Indices: 30847011--30847273 Score: 365
Period size: 140 Copynumber: 1.9 Consensus size: 141
30847001 GTAAGGTACC
* *
30847011 GATGCCATGTCCCAGACATGGTCTTACACTGGCTCATATCTCAAGTCGATGCCATGTCCCAGACA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGTCGATGCCATGTCCCAGACA
* *
30847076 TGGTCTTACACTGACCATCATCTCGTAGCCGATGCATGTCCCAGACATGTCTTACACTGGCTTAC
66 TGGTCTTACACTGACCATCATATCGTAGCCGATGCATGTCCAAGACATGTCTTACACTGGCTTAC
30847141 ATCTCGAGGCT
131 ATCTCGAGGCT
* * *
30847152 GATG-CATGTCCCAGACAT-GTCTTACACTAGCAC-TCCTCTCAGTGTTGATGCCATGTCCCAGA
1 GATGCCATGTCCCAGACATGGTCTTACACTAGCACAT-ATCTCA-AGTCGATGCCATGTCCCAGA
* * *
30847214 CATGGTCTTACACT-AGCTTCCATAAT-GTGGCCGATGCATGTCCAAGACATGTCTTACACT
64 CATGGTCTTACACTGACCAT-CAT-ATCGTAGCCGATGCATGTCCAAGACATGTCTTACACT
30847274 AGCACACATA
Statistics
Matches: 108, Mismatches: 10, Indels: 9
0.85 0.08 0.07
Matches are distributed among these distances:
138 1 0.01
139 21 0.19
140 81 0.75
141 5 0.05
ACGTcount: A:0.23, C:0.30, G:0.19, T:0.28
Consensus pattern (141 bp):
GATGCCATGTCCCAGACATGGTCTTACACTAGCACATATCTCAAGTCGATGCCATGTCCCAGACA
TGGTCTTACACTGACCATCATATCGTAGCCGATGCATGTCCAAGACATGTCTTACACTGGCTTAC
ATCTCGAGGCT
Found at i:30847985 original size:12 final size:12
Alignment explanation
Indices: 30847968--30847992 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
30847958 CAAAAATGTA
30847968 AAAATCATCAAG
1 AAAATCATCAAG
30847980 AAAATCATCAAG
1 AAAATCATCAAG
30847992 A
1 A
30847993 TCACTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.16, G:0.08, T:0.16
Consensus pattern (12 bp):
AAAATCATCAAG
Found at i:30850073 original size:26 final size:26
Alignment explanation
Indices: 30850034--30850090 Score: 87
Period size: 26 Copynumber: 2.2 Consensus size: 26
30850024 TCTCATTCCT
*
30850034 ATTTTACCCCTAGTAAAATTTTGATG
1 ATTTTACCCCTAGTAAAATTTTGACG
* *
30850060 ATTTTATCCTTAGTAAAATTTTGACG
1 ATTTTACCCCTAGTAAAATTTTGACG
30850086 ATTTT
1 ATTTT
30850091 GGTTCAGGTA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
26 28 1.00
ACGTcount: A:0.30, C:0.12, G:0.11, T:0.47
Consensus pattern (26 bp):
ATTTTACCCCTAGTAAAATTTTGACG
Found at i:30850267 original size:6 final size:6
Alignment explanation
Indices: 30850253--30850286 Score: 50
Period size: 6 Copynumber: 5.7 Consensus size: 6
30850243 CAAATGACTT
* *
30850253 ATTTAC ATTTTC ATTTCC ATTTCC ATTTCC ATTT
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC ATTT
30850287 TTGGAAACCT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.21, C:0.24, G:0.00, T:0.56
Consensus pattern (6 bp):
ATTTCC
Found at i:30862352 original size:46 final size:46
Alignment explanation
Indices: 30862180--30862352 Score: 174
Period size: 46 Copynumber: 3.7 Consensus size: 46
30862170 AACCCGCCCC
** * * * *
30862180 TAAGTGAACTCAAACTCAACTCAACGAGCTCGGGCGTTCGAATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* *
30862226 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGATGCCTAGTT-ACAT--T
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA---C-A-TTCGCATCCA
* *
30862274 TCA-CGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
*
30862319 TAAGTGAACTCGGACACAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
30862353 TGCTCAACCA
Statistics
Matches: 103, Mismatches: 15, Indels: 18
0.76 0.11 0.13
Matches are distributed among these distances:
42 2 0.02
43 4 0.04
44 1 0.01
45 2 0.02
46 58 0.56
47 29 0.28
48 2 0.02
49 1 0.01
50 2 0.02
51 2 0.02
ACGTcount: A:0.31, C:0.27, G:0.20, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:30868096 original size:21 final size:21
Alignment explanation
Indices: 30868072--30868113 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
30868062 TCATCAGATC
*
30868072 TACACCTTGAGGCATCGGGGG
1 TACACCTTGAGGAATCGGGGG
**
30868093 TACAGGTTGAGGAATCGGGGG
1 TACACCTTGAGGAATCGGGGG
30868114 AGGTGGGGGA
Statistics
Matches: 18, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.21, C:0.17, G:0.43, T:0.19
Consensus pattern (21 bp):
TACACCTTGAGGAATCGGGGG
Found at i:30869397 original size:53 final size:53
Alignment explanation
Indices: 30869317--30869423 Score: 205
Period size: 53 Copynumber: 2.0 Consensus size: 53
30869307 AGCCATTTTA
*
30869317 ACAATTTAAGCCTTCGGATAGTGTGAACGAGTCTTCGACCTATCCCGATTCTC
1 ACAATTTAAGCCTTAGGATAGTGTGAACGAGTCTTCGACCTATCCCGATTCTC
30869370 ACAATTTAAGCCTTAGGATAGTGTGAACGAGTCTTCGACCTATCCCGATTCTC
1 ACAATTTAAGCCTTAGGATAGTGTGAACGAGTCTTCGACCTATCCCGATTCTC
30869423 A
1 A
30869424 AGCCTGCTTG
Statistics
Matches: 53, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
53 53 1.00
ACGTcount: A:0.26, C:0.25, G:0.19, T:0.30
Consensus pattern (53 bp):
ACAATTTAAGCCTTAGGATAGTGTGAACGAGTCTTCGACCTATCCCGATTCTC
Found at i:30872586 original size:40 final size:40
Alignment explanation
Indices: 30872542--30872638 Score: 108
Period size: 40 Copynumber: 2.5 Consensus size: 40
30872532 TACGGTACCT
* *
30872542 CTTGGTGTGTAGGGTTGGATGGGTTAATTTTATCCCCATA
1 CTTGGTGTGTAGGGTTGGATGGGTCAATCTTATCCCCATA
* * * * *
30872582 CTTGGTTTGTAGGGCTGGGTTGGTCGATCTTATCCCCATA
1 CTTGGTGTGTAGGGTTGGATGGGTCAATCTTATCCCCATA
*
30872622 --TGGTGTGTTGGGTTGGA
1 CTTGGTGTGTAGGGTTGGA
30872639 CAGAGATGGT
Statistics
Matches: 46, Mismatches: 11, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
38 13 0.28
40 33 0.72
ACGTcount: A:0.13, C:0.13, G:0.34, T:0.39
Consensus pattern (40 bp):
CTTGGTGTGTAGGGTTGGATGGGTCAATCTTATCCCCATA
Found at i:30877551 original size:55 final size:55
Alignment explanation
Indices: 30877451--30877556 Score: 124
Period size: 55 Copynumber: 1.9 Consensus size: 55
30877441 TGACTTTTAA
* ** * *
30877451 ACACGATCATGGCACACACCCGTATGGCCTGTCCGTGTTCAATACTGACTTTGGG
1 ACACGATCATGGCACACACCCGTATGACCTACCCGTGTCCAATACTAACTTTGGG
* * *
30877506 ACACGA-CTATGGCACACGCCCGTGTGACCTACCCGTGTCCTATACTAACTT
1 ACACGATC-ATGGCACACACCCGTATGACCTACCCGTGTCCAATACTAACTT
30877557 AAAATTTTAA
Statistics
Matches: 42, Mismatches: 8, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
54 1 0.02
55 41 0.98
ACGTcount: A:0.23, C:0.32, G:0.21, T:0.25
Consensus pattern (55 bp):
ACACGATCATGGCACACACCCGTATGACCTACCCGTGTCCAATACTAACTTTGGG
Found at i:30882712 original size:40 final size:40
Alignment explanation
Indices: 30882668--30882764 Score: 117
Period size: 40 Copynumber: 2.5 Consensus size: 40
30882658 TACGGTACCT
* * *
30882668 CTTGGTGTGTAGGGTTGGATGGGTTGATTTTATCCCCATA
1 CTTGGTGTGTAGGGTTGGATGAGTCGATCTTATCCCCATA
* * *
30882708 CTTGGTTTGTAGGGCTGGGTGAGTCGATCTTATCCCCATA
1 CTTGGTGTGTAGGGTTGGATGAGTCGATCTTATCCCCATA
*
30882748 --TGGTGTGTTGGGTTGGA
1 CTTGGTGTGTAGGGTTGGA
30882765 CGGAGATGGT
Statistics
Matches: 47, Mismatches: 10, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
38 13 0.28
40 34 0.72
ACGTcount: A:0.13, C:0.13, G:0.35, T:0.38
Consensus pattern (40 bp):
CTTGGTGTGTAGGGTTGGATGAGTCGATCTTATCCCCATA
Found at i:30889402 original size:44 final size:44
Alignment explanation
Indices: 30889353--30889436 Score: 125
Period size: 44 Copynumber: 1.9 Consensus size: 44
30889343 TGTTCAGGGA
**
30889353 TACTTCAACCTT-GAGTCGATGAGGCATTATAAGTGTCGTATTGT
1 TACTTCAA-CTTCGAGTCGATGAGGCACCATAAGTGTCGTATTGT
*
30889397 TACTTCAACTTCGAGTCGATGAGGCACCATATGTGTCGTA
1 TACTTCAACTTCGAGTCGATGAGGCACCATAAGTGTCGTA
30889437 CTGCTACTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
43 3 0.08
44 33 0.92
ACGTcount: A:0.25, C:0.19, G:0.23, T:0.33
Consensus pattern (44 bp):
TACTTCAACTTCGAGTCGATGAGGCACCATAAGTGTCGTATTGT
Found at i:30899869 original size:14 final size:15
Alignment explanation
Indices: 30899845--30899880 Score: 56
Period size: 14 Copynumber: 2.5 Consensus size: 15
30899835 AGTTATCAGA
30899845 ATTTATAAAATAGTT
1 ATTTATAAAATAGTT
*
30899860 ATTT-TAAAATATTT
1 ATTTATAAAATAGTT
30899874 ATTTATA
1 ATTTATA
30899881 TTAGAAGAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
14 13 0.68
15 6 0.32
ACGTcount: A:0.44, C:0.00, G:0.03, T:0.53
Consensus pattern (15 bp):
ATTTATAAAATAGTT
Found at i:30907215 original size:22 final size:22
Alignment explanation
Indices: 30907190--30907264 Score: 69
Period size: 22 Copynumber: 3.2 Consensus size: 22
30907180 AGGTAGAGGA
30907190 AAAAGTAGATAGAGAAAGATGC
1 AAAAGTAGATAGAGAAAGATGC
* * * * *
30907212 AAAAGAGGNAGATGAAAGGAAGAGGA
1 -AAA-A-GTAGAT-AGAGAAAGATGC
30907238 AAAAGTAGATAGAGAAAGATGC
1 AAAAGTAGATAGAGAAAGATGC
30907260 AAAAG
1 AAAAG
30907265 AGGAAGCAGA
Statistics
Matches: 39, Mismatches: 10, Indels: 7
0.70 0.18 0.12
Matches are distributed among these distances:
22 13 0.33
23 8 0.21
24 2 0.05
25 8 0.21
26 8 0.21
ACGTcount: A:0.56, C:0.03, G:0.31, T:0.09
Consensus pattern (22 bp):
AAAAGTAGATAGAGAAAGATGC
Found at i:30907236 original size:48 final size:47
Alignment explanation
Indices: 30907173--30907268 Score: 174
Period size: 48 Copynumber: 2.0 Consensus size: 47
30907163 AGGAAAACAA
*
30907173 AGATGAAAGGTAGAGGAAAAAGTAGATAGAGAAAGATGCAAAAGAGG
1 AGATGAAAGGAAGAGGAAAAAGTAGATAGAGAAAGATGCAAAAGAGG
30907220 NAGATGAAAGGAAGAGGAAAAAGTAGATAGAGAAAGATGCAAAAGAGG
1 -AGATGAAAGGAAGAGGAAAAAGTAGATAGAGAAAGATGCAAAAGAGG
30907268 A
1 A
30907269 AGCAGAAATA
Statistics
Matches: 47, Mismatches: 1, Indels: 1
0.96 0.02 0.02
Matches are distributed among these distances:
47 1 0.02
48 46 0.98
ACGTcount: A:0.54, C:0.02, G:0.33, T:0.09
Consensus pattern (47 bp):
AGATGAAAGGAAGAGGAAAAAGTAGATAGAGAAAGATGCAAAAGAGG
Found at i:30910319 original size:127 final size:127
Alignment explanation
Indices: 30910144--30910465 Score: 412
Period size: 127 Copynumber: 2.5 Consensus size: 127
30910134 CTTTAAAATG
** * * *
30910144 AAGGCAATGTTTGATGTTTAGAAATTCGGGAAATCATGCCCTACCGTGCTGGGTTTCGGTTTCTC
1 AAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCATGCCCTACCGTGCTGGGTTTCGATTTCTC
* *
30910209 GTTTGTTCAAAATAATCGAATATTCTTTTAGAATTTCACTCGTGTTTTCCAAATTCTAAAAC
66 GTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTACAAATTCTAAAAC
* * * * *
30910271 AAGGCAATGTTCAAGGTTTGGAAATTCGGGGAATCGTGCCCTATCGTGCTGGTTTTTGATTTC-C
1 AAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCATGCCCTACCGTGCTGGGTTTCGATTTCTC
* * * * * * *
30910335 GGTTTGTTCCAAATAATTGAATGTTCCTTTAGTATTTCACTCGTGTTTTATAAATTTTAAAGC
66 -GTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTACAAATTCTAAAAC
* ** * *
30910398 AAGGCAATGTTCAATGTTTGGAAGTTCAAGGAATCATGCCCTACCGTGCCGGGTTTCGATTTTTC
1 AAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCATGCCCTACCGTGCTGGGTTTCGATTTCTC
30910463 GTT
66 GTT
30910466 GGACTAAATA
Statistics
Matches: 164, Mismatches: 29, Indels: 4
0.83 0.15 0.02
Matches are distributed among these distances:
126 1 0.01
127 162 0.99
128 1 0.01
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.38
Consensus pattern (127 bp):
AAGGCAATGTTCAATGTTTGGAAATTCGGGGAATCATGCCCTACCGTGCTGGGTTTCGATTTCTC
GTTTGTTCAAAATAATCGAATATTCCTTTAGAATTTCACTCGTGTTTTACAAATTCTAAAAC
Found at i:30916538 original size:43 final size:43
Alignment explanation
Indices: 30916487--30916632 Score: 229
Period size: 43 Copynumber: 3.4 Consensus size: 43
30916477 TTTAATGTAA
30916487 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTATT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTATT
* *
30916530 TGACACTAAGTGTGCGATACAATTATAGCTTCGGCTAGTTATT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTATT
* * * * *
30916573 TGGCACTAAATGTGCGAAATAATTATAGCTTCGACTAATTAAT
1 TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTATT
30916616 TGGCACTAAGTGTGCGA
1 TGGCACTAAGTGTGCGA
30916633 GTTAGTTGAA
Statistics
Matches: 93, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
43 93 1.00
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.33
Consensus pattern (43 bp):
TGGCACTAAGTGTGCGATACAATTATAGCTTCGGCTAATTATT
Found at i:30922788 original size:54 final size:53
Alignment explanation
Indices: 30922631--30922788 Score: 203
Period size: 54 Copynumber: 2.9 Consensus size: 53
30922621 CACATTTCTT
* *
30922631 CGATGCCATAGCCCAGCTATGGTCTTATAC-GAGTCGCTTGTATCATTT-TAATC
1 CGATGCCATAGCCCAGCTATGGTCTTATACGGAATCGC-T-TATCATTTGTTATC
* ** * *
30922684 CGAAGCCATAGCCCAGCTATGGTCTTATACGGGAATCATTTATCACTTGTTTTC
1 CGATGCCATAGCCCAGCTATGGTCTTATAC-GGAATCGCTTATCATTTGTTATC
30922738 CGATGCCATAGCCCAGCTATGGTCTTATACGGATATCGCTTATCATTTGTT
1 CGATGCCATAGCCCAGCTATGGTCTTATACGGA-ATCGCTTATCATTTGTT
30922789 GCCATAGTCC
Statistics
Matches: 90, Mismatches: 11, Indels: 7
0.83 0.10 0.06
Matches are distributed among these distances:
53 39 0.43
54 47 0.52
55 4 0.04
ACGTcount: A:0.23, C:0.24, G:0.19, T:0.34
Consensus pattern (53 bp):
CGATGCCATAGCCCAGCTATGGTCTTATACGGAATCGCTTATCATTTGTTATC
Found at i:30924408 original size:52 final size:52
Alignment explanation
Indices: 30924332--30924525 Score: 238
Period size: 52 Copynumber: 3.8 Consensus size: 52
30924322 CCATGGCAGC
* *
30924332 ATGTGAAATGTGATTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
1 ATGTGATATGTG-CTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
* *
30924385 ATGTGATTTGTGCTTCCGTATAAGACCATAGTTGGGCTATGGCTTCGGAGAA
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
* * * * *
30924437 ATGTGATATGTGCTACTGTATAAGACCATATCTGGGATATGGCATC--AG--
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
* *
30924485 -TGTGATATGTG-ATCCGTATAAGACCATGGCTGGGCTATGGC
1 ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGC
30924526 CTTGGTATGT
Statistics
Matches: 124, Mismatches: 17, Indels: 7
0.84 0.11 0.05
Matches are distributed among these distances:
46 24 0.19
47 11 0.09
50 2 0.02
52 77 0.62
53 10 0.08
ACGTcount: A:0.26, C:0.15, G:0.28, T:0.30
Consensus pattern (52 bp):
ATGTGATATGTGCTTCCGTATAAGACCATAGCTGGGCTATGGCTTCGGAGAA
Found at i:30934629 original size:2 final size:2
Alignment explanation
Indices: 30934616--30934646 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
30934606 AGGATATTTT
*
30934616 GA GA GG GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA GA GA GA G
30934647 CAAGGACTTA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.45, C:0.00, G:0.55, T:0.00
Consensus pattern (2 bp):
GA
Found at i:30936491 original size:10 final size:9
Alignment explanation
Indices: 30936476--30936538 Score: 51
Period size: 8 Copynumber: 6.9 Consensus size: 9
30936466 ATTTTTCTTT
30936476 AAAATTATTA
1 AAAATTA-TA
30936486 AAAATTAT-
1 AAAATTATA
30936494 AAAATTAT-
1 AAAATTATA
*
30936502 AAAATAATAA
1 AAAATTAT-A
30936512 AAAAGTGTA-A
1 AAAA-T-TATA
*
30936522 AAAAATATA
1 AAAATTATA
30936531 AAAATTAT
1 AAAATTAT
30936539 TGTATATGAC
Statistics
Matches: 44, Mismatches: 4, Indels: 11
0.75 0.07 0.19
Matches are distributed among these distances:
8 17 0.39
9 9 0.20
10 16 0.36
11 1 0.02
12 1 0.02
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (9 bp):
AAAATTATA
Found at i:30936515 original size:18 final size:17
Alignment explanation
Indices: 30936476--30936538 Score: 56
Period size: 18 Copynumber: 3.5 Consensus size: 17
30936466 ATTTTTCTTT
* *
30936476 AAAATTATTAAAAATTAT
1 AAAATTA-TAAAAAATAA
30936494 AAAATTATAAAATAATAA
1 AAAATTATAAAA-AATAA
30936512 AAAAGTGTA-AAAAAATATA
1 AAAA-T-TATAAAAAATA-A
30936531 AAAATTAT
1 AAAATTAT
30936539 TGTATATGAC
Statistics
Matches: 38, Mismatches: 2, Indels: 10
0.76 0.04 0.20
Matches are distributed among these distances:
17 7 0.18
18 19 0.50
19 10 0.26
20 2 0.05
ACGTcount: A:0.67, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
AAAATTATAAAAAATAA
Found at i:30936600 original size:19 final size:18
Alignment explanation
Indices: 30936577--30936636 Score: 66
Period size: 18 Copynumber: 3.3 Consensus size: 18
30936567 GAAACTTTTT
*
30936577 AAAAAAATAGGAAATTAC
1 AAAAAAATAGAAAATTAC
* * *
30936595 TGAAAATATATAAAATTAC
1 -AAAAAAATAGAAAATTAC
*
30936614 AAAAAAATAAAAAATTAC
1 AAAAAAATAGAAAATTAC
30936632 AAAAA
1 AAAAA
30936637 TTTTACAAAA
Statistics
Matches: 34, Mismatches: 7, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
18 20 0.59
19 14 0.41
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.20
Consensus pattern (18 bp):
AAAAAAATAGAAAATTAC
Found at i:30938143 original size:14 final size:16
Alignment explanation
Indices: 30938113--30938144 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
30938103 TAAATATCTA
30938113 AATAAATAAAAGATAG
1 AATAAATAAAAGATAG
30938129 AATAAA-AAAAG-TAG
1 AATAAATAAAAGATAG
30938143 AA
1 AA
30938145 GATGGATCGA
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 5 0.31
15 5 0.31
16 6 0.38
ACGTcount: A:0.72, C:0.00, G:0.12, T:0.16
Consensus pattern (16 bp):
AATAAATAAAAGATAG
Found at i:30938900 original size:105 final size:105
Alignment explanation
Indices: 30938713--30938918 Score: 322
Period size: 105 Copynumber: 2.0 Consensus size: 105
30938703 TAAAAGCCTT
* * * *
30938713 AAACTCGTAATTTTTGTAATAATTTCATCTAGAAATTCTACTCGCACAATCTTCACTAAAACGGT
1 AAACTCGTAATTTTTGTAATAATTTCATCCAAAAATTCTACTCACACAATCTTCACTAAAACGAT
30938778 CATAAATTGAGCCCCTGAAATCGAAATCAAGTGATTAAAA
66 CATAAATTGAGCCCCTGAAATCGAAATCAAGTGATTAAAA
* **
30938818 AAACTCGTAATTTTTGTACTAATTTCATCCAAAAATTCTACTCATGCAATCTTCACTAAAACGAT
1 AAACTCGTAATTTTTGTAATAATTTCATCCAAAAATTCTACTCACACAATCTTCACTAAAACGAT
* * *
30938883 CATAAATTGAGCTCCTGAAATCTAAATCGAGTGATT
66 CATAAATTGAGCCCCTGAAATCGAAATCAAGTGATT
30938919 CAAAGTGCGT
Statistics
Matches: 91, Mismatches: 10, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
105 91 1.00
ACGTcount: A:0.38, C:0.19, G:0.11, T:0.32
Consensus pattern (105 bp):
AAACTCGTAATTTTTGTAATAATTTCATCCAAAAATTCTACTCACACAATCTTCACTAAAACGAT
CATAAATTGAGCCCCTGAAATCGAAATCAAGTGATTAAAA
Found at i:30941390 original size:28 final size:28
Alignment explanation
Indices: 30941316--30941378 Score: 108
Period size: 28 Copynumber: 2.2 Consensus size: 28
30941306 TACGTACATG
*
30941316 CATATGGCCCATTAGGCCCAATCTCATT
1 CATATGGCCCACTAGGCCCAATCTCATT
*
30941344 CATATGGCCCACTACGCCCAATCTCATT
1 CATATGGCCCACTAGGCCCAATCTCATT
30941372 CATATGG
1 CATATGG
30941379 TCTATCTGGC
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
28 33 1.00
ACGTcount: A:0.25, C:0.33, G:0.14, T:0.27
Consensus pattern (28 bp):
CATATGGCCCACTAGGCCCAATCTCATT
Found at i:30941630 original size:8 final size:8
Alignment explanation
Indices: 30941617--30941647 Score: 53
Period size: 8 Copynumber: 3.9 Consensus size: 8
30941607 GTAGCCAGAC
30941617 TTTCGGCT
1 TTTCGGCT
*
30941625 TTTCGGCA
1 TTTCGGCT
30941633 TTTCGGCT
1 TTTCGGCT
30941641 TTTCGGC
1 TTTCGGC
30941648 ATTCTAACGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.03, C:0.26, G:0.26, T:0.45
Consensus pattern (8 bp):
TTTCGGCT
Found at i:30941638 original size:16 final size:16
Alignment explanation
Indices: 30941617--30941650 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
30941607 GTAGCCAGAC
30941617 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
30941633 TTTCGGCTTTTCGGCA
1 TTTCGGCTTTTCGGCA
30941649 TT
1 TT
30941651 CTAACGTGTG
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.06, C:0.24, G:0.24, T:0.47
Consensus pattern (16 bp):
TTTCGGCTTTTCGGCA
Found at i:30946385 original size:13 final size:13
Alignment explanation
Indices: 30946367--30946391 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
30946357 TGGTCATCAT
30946367 GGTGTGAACACAA
1 GGTGTGAACACAA
30946380 GGTGTGAACACA
1 GGTGTGAACACA
30946392 TGATCAATAC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.36, C:0.16, G:0.32, T:0.16
Consensus pattern (13 bp):
GGTGTGAACACAA
Found at i:30946835 original size:30 final size:30
Alignment explanation
Indices: 30946801--30946883 Score: 78
Period size: 30 Copynumber: 2.8 Consensus size: 30
30946791 TAAACTAAAA
*
30946801 TGAGCTAAGCTTTAGCTCGTGAGCTAAAGT
1 TGAGCTAAGCTTTAGCTCATGAGCTAAAGT
* * * * * *
30946831 TGAGCTGAGGC-TAAACTCCTAAGCTGAAGT
1 TGAGCT-AAGCTTTAGCTCATGAGCTAAAGT
*
30946861 TGAGCTAAGGTTTAGCTCATGAG
1 TGAGCTAAGCTTTAGCTCATGAG
30946884 TTGAAAATGA
Statistics
Matches: 39, Mismatches: 12, Indels: 4
0.71 0.22 0.07
Matches are distributed among these distances:
29 2 0.05
30 34 0.87
31 3 0.08
ACGTcount: A:0.28, C:0.17, G:0.28, T:0.28
Consensus pattern (30 bp):
TGAGCTAAGCTTTAGCTCATGAGCTAAAGT
Found at i:30951292 original size:21 final size:22
Alignment explanation
Indices: 30951266--30951327 Score: 90
Period size: 23 Copynumber: 2.8 Consensus size: 22
30951256 GGTGGATCAA
*
30951266 CTCTTACGAGCTTTTGTT-TAG
1 CTCTTACGAGCTTTTGTTACAG
30951287 CTCTTACGAGCTTTTGTTACCAG
1 CTCTTACGAGCTTTTGTTA-CAG
*
30951310 CTCTTATGAGCTTTTGTT
1 CTCTTACGAGCTTTTGTT
30951328 GATGATGTAA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
21 18 0.49
23 19 0.51
ACGTcount: A:0.15, C:0.21, G:0.18, T:0.47
Consensus pattern (22 bp):
CTCTTACGAGCTTTTGTTACAG
Found at i:30952227 original size:17 final size:17
Alignment explanation
Indices: 30952215--30952248 Score: 59
Period size: 17 Copynumber: 1.9 Consensus size: 17
30952205 AGAGAAGGAA
30952215 AGAAAGAAAAGAAAAAG
1 AGAAAGAAAAGAAAAAG
30952232 AGAAAGAAAAGAGAAAA
1 AGAAAGAAAAGA-AAAA
30952249 AGCTAAGGTT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
17 12 0.75
18 4 0.25
ACGTcount: A:0.76, C:0.00, G:0.24, T:0.00
Consensus pattern (17 bp):
AGAAAGAAAAGAAAAAG
Found at i:30954093 original size:41 final size:42
Alignment explanation
Indices: 30954026--30954105 Score: 101
Period size: 41 Copynumber: 1.9 Consensus size: 42
30954016 ATTTTGAGTC
*
30954026 CACACGGCTAGACACATGGGCTTGTGACTAGACCGTGTGAGA
1 CACACGGCTAGACACACGGGCTTGTGACTAGACCGTGTGAGA
* * *
30954068 CACATGGCTA-ACACACGGG-TGTGTGACTTGGCCGTGTG
1 CACACGGCTAGACACACGGGCT-TGTGACTAGACCGTGTG
30954106 TCCCTTGCAA
Statistics
Matches: 33, Mismatches: 4, Indels: 3
0.82 0.10 0.08
Matches are distributed among these distances:
40 1 0.03
41 23 0.70
42 9 0.27
ACGTcount: A:0.23, C:0.24, G:0.33, T:0.21
Consensus pattern (42 bp):
CACACGGCTAGACACACGGGCTTGTGACTAGACCGTGTGAGA
Found at i:30956603 original size:57 final size:57
Alignment explanation
Indices: 30956510--30956623 Score: 210
Period size: 57 Copynumber: 2.0 Consensus size: 57
30956500 GAAGATAGTT
* *
30956510 TTGCTGATGACAAAGTTGTTGCAAAAGAATTTTTAGTTCGTCTGGGATGATCAGTGC
1 TTGCCGATGACAAAGTTGTTGCAAAAGAATTTTTAGTTCGTCTGGAATGATCAGTGC
30956567 TTGCCGATGACAAAGTTGTTGCAAAAGAATTTTTAGTTCGTCTGGAATGATCAGTGC
1 TTGCCGATGACAAAGTTGTTGCAAAAGAATTTTTAGTTCGTCTGGAATGATCAGTGC
30956624 CAAGAAACTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
57 55 1.00
ACGTcount: A:0.27, C:0.13, G:0.25, T:0.34
Consensus pattern (57 bp):
TTGCCGATGACAAAGTTGTTGCAAAAGAATTTTTAGTTCGTCTGGAATGATCAGTGC
Found at i:30964706 original size:17 final size:18
Alignment explanation
Indices: 30964684--30964721 Score: 51
Period size: 18 Copynumber: 2.2 Consensus size: 18
30964674 AAGTTAAAAG
30964684 GGCCAAATA-AGAAATTA
1 GGCCAAATACAGAAATTA
* *
30964701 GGCCAATTACATAAATTA
1 GGCCAAATACAGAAATTA
30964719 GGC
1 GGC
30964722 ATCATAAGTA
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
17 8 0.44
18 10 0.56
ACGTcount: A:0.45, C:0.16, G:0.18, T:0.21
Consensus pattern (18 bp):
GGCCAAATACAGAAATTA
Found at i:30964773 original size:5 final size:5
Alignment explanation
Indices: 30964765--30964793 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
30964755 AAGTTAAGTG
30964765 TATAT TATAT TATAT TATAT TATAT TATA
1 TATAT TATAT TATAT TATAT TATAT TATA
30964794 AAGGAAAAAG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
TATAT
Found at i:30973984 original size:24 final size:22
Alignment explanation
Indices: 30973931--30973984 Score: 65
Period size: 25 Copynumber: 2.4 Consensus size: 22
30973921 TATTAAAGAG
*
30973931 AAAA-TTAATATTTTTTTGTTA
1 AAAATTTAATATTTTATTGTTA
30973952 AAAATTTTATATATTTGTATTGTTA
1 AAAA-TTTA-ATATTT-TATTGTTA
30973977 AAAATTTA
1 AAAATTTA
30973985 CATGGTTGAC
Statistics
Matches: 28, Mismatches: 1, Indels: 5
0.82 0.03 0.15
Matches are distributed among these distances:
21 4 0.14
23 3 0.11
24 10 0.36
25 11 0.39
ACGTcount: A:0.41, C:0.00, G:0.06, T:0.54
Consensus pattern (22 bp):
AAAATTTAATATTTTATTGTTA
Found at i:30975654 original size:31 final size:31
Alignment explanation
Indices: 30975613--30975679 Score: 98
Period size: 31 Copynumber: 2.2 Consensus size: 31
30975603 ATTAAACGTG
* * *
30975613 TATAATTGAATTAAAATGAAAGTTTCATGTA
1 TATATTTGAATTAAAATCAAAGTTTCATATA
*
30975644 TATATTTGAATTATAATCAAAGTTTCATATA
1 TATATTTGAATTAAAATCAAAGTTTCATATA
30975675 TATAT
1 TATAT
30975680 ATATATATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.43, C:0.04, G:0.09, T:0.43
Consensus pattern (31 bp):
TATATTTGAATTAAAATCAAAGTTTCATATA
Found at i:30981073 original size:59 final size:59
Alignment explanation
Indices: 30980997--30981156 Score: 189
Period size: 59 Copynumber: 2.7 Consensus size: 59
30980987 TTAGCCTTTT
* * *
30980997 AACTTGACAAATGTTCTCACATTGAAGCTTGAACTTTCTTTTATCCAAATTAGGCTC-TG
1 AACTTGACAATTGTTCTCACATTGAAGCCTAAACTTTCTTTTATCCAAATTAGGC-CGTG
* ** * *
30981056 AACTTGACAATTATTCTCACATTGGGGCCTAAACTTTTTTTTATCCAAATTAGTCCGTG
1 AACTTGACAATTGTTCTCACATTGAAGCCTAAACTTTCTTTTATCCAAATTAGGCCGTG
* * *
30981115 AACTTGGCAATTGTTCTCAC-TTTAAGGCCTAAACTTTTTTTT
1 AACTTGACAATTGTTCTCACATTGAA-GCCTAAACTTTCTTTT
30981157 TATTAAGTTA
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
58 3 0.03
59 83 0.97
ACGTcount: A:0.27, C:0.20, G:0.13, T:0.40
Consensus pattern (59 bp):
AACTTGACAATTGTTCTCACATTGAAGCCTAAACTTTCTTTTATCCAAATTAGGCCGTG
Found at i:30981184 original size:59 final size:59
Alignment explanation
Indices: 30981008--30981197 Score: 149
Period size: 59 Copynumber: 3.2 Consensus size: 59
30980998 ACTTGACAAA
* * * * * *
30981008 TGTTCTCACATTGAA-GCTTGAACTTTCTTTTATCCAAATTAGGCTC-TGAAC-TTGACAAT
1 TGTTCTCACATT-AAGGCCTAAACTTTTTTTTATCCAAATTAGTC-CGTAAACATAG-CAAT
* ** * * *
30981067 TATTCTCACATTGGGGCCTAAACTTTTTTTTATCCAAATTAGTCCGTGAACTTGGCAAT
1 TGTTCTCACATTAAGGCCTAAACTTTTTTTTATCCAAATTAGTCCGTAAACATAGCAAT
* * *
30981126 TGTTCTCACTTTAAGGCCTAAACTTTTTTTTTAT-TAAGTTAGGTCC-TAAACATAGCAAT
1 TGTTCTCACATTAAGGCCTAAAC-TTTTTTTTATCCAAATTA-GTCCGTAAACATAGCAAT
30981185 TGTT-TCCACATTA
1 TGTTCT-CACATTA
30981198 GGGCATGGAT
Statistics
Matches: 107, Mismatches: 18, Indels: 12
0.78 0.13 0.09
Matches are distributed among these distances:
58 2 0.02
59 89 0.83
60 16 0.15
ACGTcount: A:0.27, C:0.19, G:0.13, T:0.41
Consensus pattern (59 bp):
TGTTCTCACATTAAGGCCTAAACTTTTTTTTATCCAAATTAGTCCGTAAACATAGCAAT
Found at i:30981308 original size:31 final size:31
Alignment explanation
Indices: 30981249--30981319 Score: 79
Period size: 31 Copynumber: 2.3 Consensus size: 31
30981239 GAAAACCCTA
* *
30981249 AAGTTCAAGCCCCAATGTAAGAATAATTGCT
1 AAGTTCAAGCCCCAATATAAGAACAATTGCT
* ** *
30981280 AAGTTCATGCCCCAATATGGGAACAATTGCC
1 AAGTTCAAGCCCCAATATAAGAACAATTGCT
*
30981311 AAGGTCAAG
1 AAGTTCAAG
30981320 GATTAACTGA
Statistics
Matches: 32, Mismatches: 8, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
31 32 1.00
ACGTcount: A:0.37, C:0.21, G:0.20, T:0.23
Consensus pattern (31 bp):
AAGTTCAAGCCCCAATATAAGAACAATTGCT
Found at i:30990677 original size:27 final size:27
Alignment explanation
Indices: 30990639--30990694 Score: 94
Period size: 27 Copynumber: 2.1 Consensus size: 27
30990629 GGAACCCTTA
*
30990639 AAGTTGTGATGTCAACTCCAAAATTTG
1 AAGTTGTGATGTCAACACCAAAATTTG
*
30990666 AAGTTGTGATGTCAACACTAAAATTTG
1 AAGTTGTGATGTCAACACCAAAATTTG
30990693 AA
1 AA
30990695 AACATTACAA
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.38, C:0.12, G:0.18, T:0.32
Consensus pattern (27 bp):
AAGTTGTGATGTCAACACCAAAATTTG
Found at i:30991198 original size:17 final size:17
Alignment explanation
Indices: 30991159--30991210 Score: 50
Period size: 18 Copynumber: 2.9 Consensus size: 17
30991149 TGAAAAAAAT
*
30991159 GATAAGGTTAAGGGTTTA
1 GATAGGGTT-AGGGTTTA
* *
30991177 TATAGGGTTAGGGTTTG
1 GATAGGGTTAGGGTTTA
*
30991194 GATAGTCGTTAGGGTTT
1 GATAG-GGTTAGGGTTT
30991211 TTTTTTAATT
Statistics
Matches: 28, Mismatches: 5, Indels: 2
0.80 0.14 0.06
Matches are distributed among these distances:
17 11 0.39
18 17 0.61
ACGTcount: A:0.23, C:0.02, G:0.37, T:0.38
Consensus pattern (17 bp):
GATAGGGTTAGGGTTTA
Found at i:30993749 original size:181 final size:181
Alignment explanation
Indices: 30993445--30993805 Score: 488
Period size: 181 Copynumber: 2.0 Consensus size: 181
30993435 AAAGTAAATA
* *
30993445 AATAATTAACCTTTAAAACAAAACTAGACTTAAACCGAAACTAAAATAACACACATGAGGACTCA
1 AATAATTAACCTTTAAAACAAAACTAGACTTAAACCAAAACTAAAATAACACACATAAGGACTCA
*** * ** ** *
30993510 AACTTGAGACCCAATGATAGACTAACACTCATTCAACCACTGAACCAGTAGACTCATTCTAGCAC
66 AACCCAAGACCCAATGATAAACTAACACTCATTCAACCACCAAACCAACAGACTCATTCTAACAC
* * * *
30993575 TAAATTGAGAAAATAATTTCAACTGCTCGACTTACTCATTGACCCTAACTT
131 TAAATTGAGAAAATAAATTCAACAGCTCAACCTACTCATTGACCCTAACTT
* * * **
30993626 AATAATTAATCTTTAAAACAAAACTAGATTTGAACCAAAACTAAAATAACACACATAAGGACTTG
1 AATAATTAACCTTTAAAACAAAACTAGACTTAAACCAAAACTAAAATAACACACATAAGGACTCA
* * * *
30993691 AACCCAAGACCTAATGATAAACTAACACTTATTCAACCACCAAACCAACAGGCTCATTCTAATAC
66 AACCCAAGACCCAATGATAAACTAACACTCATTCAACCACCAAACCAACAGACTCATTCTAACAC
* *
30993756 TAAATTGCGAAAATAAATTCAACAGCTCAACCTATTCATTGACCCTAACT
131 TAAATTGAGAAAATAAATTCAACAGCTCAACCTACTCATTGACCCTAACT
30993806 ACAAACCTCA
Statistics
Matches: 154, Mismatches: 26, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
181 154 1.00
ACGTcount: A:0.44, C:0.24, G:0.09, T:0.24
Consensus pattern (181 bp):
AATAATTAACCTTTAAAACAAAACTAGACTTAAACCAAAACTAAAATAACACACATAAGGACTCA
AACCCAAGACCCAATGATAAACTAACACTCATTCAACCACCAAACCAACAGACTCATTCTAACAC
TAAATTGAGAAAATAAATTCAACAGCTCAACCTACTCATTGACCCTAACTT
Found at i:31008453 original size:20 final size:20
Alignment explanation
Indices: 31008424--31008468 Score: 63
Period size: 20 Copynumber: 2.2 Consensus size: 20
31008414 TTATTTTAAA
*
31008424 TCAAATTTTCAAACAGGGTT
1 TCAAAATTTCAAACAGGGTT
* *
31008444 TCAAAATTTCAAATAGTGTT
1 TCAAAATTTCAAACAGGGTT
31008464 TCAAA
1 TCAAA
31008469 CAATCAAATT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
20 22 1.00
ACGTcount: A:0.40, C:0.13, G:0.11, T:0.36
Consensus pattern (20 bp):
TCAAAATTTCAAACAGGGTT
Found at i:31021390 original size:40 final size:40
Alignment explanation
Indices: 31021313--31021394 Score: 101
Period size: 40 Copynumber: 2.0 Consensus size: 40
31021303 TTGACTTGTA
* * * *
31021313 AATGGTTGGATAATATGGTGGTATACACCGTGGAAGGTGT
1 AATGGTTGGACAACATGGTGGTACACACCGTGAAAGGTGT
* **
31021353 AATGGTTGGACAACATGGTGGTACATATTGTGAAAGGTGT
1 AATGGTTGGACAACATGGTGGTACACACCGTGAAAGGTGT
31021393 AA
1 AA
31021395 AGAGTCATTA
Statistics
Matches: 35, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.30, C:0.07, G:0.33, T:0.29
Consensus pattern (40 bp):
AATGGTTGGACAACATGGTGGTACACACCGTGAAAGGTGT
Found at i:31025011 original size:18 final size:17
Alignment explanation
Indices: 31024971--31025013 Score: 52
Period size: 16 Copynumber: 2.5 Consensus size: 17
31024961 CAAGCACTCT
*
31024971 CATAATCCAGCAGTTCC
1 CATAAACCAGCAGTTCC
*
31024988 CA-AAACCAGCAGTTTTC
1 CATAAACCAGCAG-TTCC
31025005 CATAAACCA
1 CATAAACCA
31025014 TCCCGTTTGC
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 9 0.41
17 7 0.32
18 6 0.27
ACGTcount: A:0.37, C:0.33, G:0.09, T:0.21
Consensus pattern (17 bp):
CATAAACCAGCAGTTCC
Found at i:31034751 original size:17 final size:19
Alignment explanation
Indices: 31034691--31034779 Score: 64
Period size: 18 Copynumber: 4.9 Consensus size: 19
31034681 AAAAAAGTTC
* *
31034691 TAAATAATTTTTAA-AATT
1 TAAAAAATTTATAATAATT
* * *
31034709 CAAAATATTTATAA-AAAT
1 TAAAAAATTTATAATAATT
* *
31034727 TCAAAAATTTAT-AT-TTT
1 TAAAAAATTTATAATAATT
31034744 TAAAAAA-TTATAATAATT
1 TAAAAAATTTATAATAATT
31034762 TAAAAAATTCTA-AATAAT
1 TAAAAAATT-TATAATAAT
31034780 ATATAAATAA
Statistics
Matches: 54, Mismatches: 12, Indels: 9
0.72 0.16 0.12
Matches are distributed among these distances:
16 4 0.07
17 10 0.19
18 31 0.57
19 7 0.13
20 2 0.04
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (19 bp):
TAAAAAATTTATAATAATT
Found at i:31034777 original size:19 final size:19
Alignment explanation
Indices: 31034681--31034779 Score: 67
Period size: 19 Copynumber: 4.9 Consensus size: 19
31034671 AAAATTACAA
31034681 AAAAAAGTTCTAAATAATTT
1 AAAAAA-TTCTAAATAATTT
** *
31034701 TTAAAATTCAAAAT-ATTT
1 AAAAAATTCTAAATAATTT
*
31034719 ATAAAAATTCAAAAATTTATATTTTT
1 A-AAAAATTC-TAAA--TA-A--TTT
*
31034745 AAAAAATTAT-AATAATTT
1 AAAAAATTCTAAATAATTT
31034763 AAAAAATTCTAAATAAT
1 AAAAAATTCTAAATAAT
31034780 ATATAAATAA
Statistics
Matches: 62, Mismatches: 8, Indels: 19
0.70 0.09 0.21
Matches are distributed among these distances:
18 16 0.26
19 20 0.32
20 9 0.15
21 2 0.03
22 1 0.02
23 2 0.03
24 1 0.02
25 7 0.11
26 4 0.06
ACGTcount: A:0.56, C:0.04, G:0.01, T:0.39
Consensus pattern (19 bp):
AAAAAATTCTAAATAATTT
Found at i:31035053 original size:16 final size:16
Alignment explanation
Indices: 31035014--31035055 Score: 50
Period size: 16 Copynumber: 2.7 Consensus size: 16
31035004 AACTTGAACA
*
31035014 ATTTCACTCG-ATTTG
1 ATTTCACTCGAATTTC
**
31035029 ATTAGACTCGAATTTC
1 ATTTCACTCGAATTTC
31035045 ATTTCACTCGA
1 ATTTCACTCGA
31035056 CTTGATTTGA
Statistics
Matches: 21, Mismatches: 5, Indels: 1
0.78 0.19 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.40
Consensus pattern (16 bp):
ATTTCACTCGAATTTC
Found at i:31038624 original size:7 final size:7
Alignment explanation
Indices: 31038612--31038636 Score: 50
Period size: 7 Copynumber: 3.6 Consensus size: 7
31038602 TTTTTTAATT
31038612 ATATTTA
1 ATATTTA
31038619 ATATTTA
1 ATATTTA
31038626 ATATTTA
1 ATATTTA
31038633 ATAT
1 ATAT
31038637 ATATTGTATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (7 bp):
ATATTTA
Found at i:31039079 original size:12 final size:12
Alignment explanation
Indices: 31039062--31039101 Score: 62
Period size: 12 Copynumber: 3.3 Consensus size: 12
31039052 CCAAGCCAAT
31039062 TAATTATTATAA
1 TAATTATTATAA
*
31039074 TAATTATTATAT
1 TAATTATTATAA
*
31039086 TATTTATTATAA
1 TAATTATTATAA
31039098 TAAT
1 TAAT
31039102 AGATAGTGAA
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
12 24 1.00
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (12 bp):
TAATTATTATAA
Found at i:31049491 original size:18 final size:18
Alignment explanation
Indices: 31049468--31049502 Score: 61
Period size: 18 Copynumber: 1.9 Consensus size: 18
31049458 GCCAAGTGCG
*
31049468 TATCCTAGCCCTTATATA
1 TATCCTAACCCTTATATA
31049486 TATCCTAACCCTTATAT
1 TATCCTAACCCTTATAT
31049503 GTTTCTTTTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.29, C:0.29, G:0.03, T:0.40
Consensus pattern (18 bp):
TATCCTAACCCTTATATA
Found at i:31050635 original size:24 final size:26
Alignment explanation
Indices: 31050594--31050642 Score: 75
Period size: 24 Copynumber: 2.0 Consensus size: 26
31050584 AAATAACTTC
*
31050594 AAAATGTACAATATAATTAAATAATA
1 AAAATGTACAATAAAATTAAATAATA
31050620 AAAAT-TA-AATAAAATTAAATAAT
1 AAAATGTACAATAAAATTAAATAAT
31050643 TTAATTAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
24 15 0.68
25 2 0.09
26 5 0.23
ACGTcount: A:0.65, C:0.02, G:0.02, T:0.31
Consensus pattern (26 bp):
AAAATGTACAATAAAATTAAATAATA
Found at i:31052935 original size:5 final size:5
Alignment explanation
Indices: 31052925--31052970 Score: 85
Period size: 5 Copynumber: 9.4 Consensus size: 5
31052915 TTATGTTTTA
31052925 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT A-TAT AT
1 ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT ATTAT AT
31052971 AAACTAAAGA
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
4 4 0.10
5 36 0.90
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (5 bp):
ATTAT
Found at i:31054883 original size:36 final size:36
Alignment explanation
Indices: 31054795--31055073 Score: 181
Period size: 36 Copynumber: 7.5 Consensus size: 36
31054785 AAAGGTATAA
* * *
31054795 AATAACTGATTATTACTGAATAATTGACTGTTAC-C
1 AATAACTAATTGTTACTGAATAATTGACTGTTACTG
* * * *
31054830 AGATAATTGACTGTTACTGGAT-ATTAGACTGTTACTG
1 A-ATAACTAATTGTTACTGAATAATT-GACTGTTACTG
* * *
31054867 AATAACTAAATATTACTGAATAATTGA-TCATTACTG
1 AATAACTAATTGTTACTGAATAATTGACT-GTTACTG
* *
31054903 AATAACTGATTGTCACTGAATGAA-TGACTGTTACTG
1 AATAACTAATTGTTACTGAAT-AATTGACTGTTACTG
*
31054939 AATAACTTAATTGTTACTGAATAATTGACTGTTATTG
1 AATAAC-TAATTGTTACTGAATAATTGACTGTTACTG
* * ** * *
31054976 GATAATCGATCAATTGATCGATACTGAATAACTGGTTATTATTG
1 AATAA-C--T-AATTG-T---TACTGAATAATTGACTGTTACTG
** * * *
31055020 AATATTTGATTGTTACCGAATAACTGACTGTTACTG
1 AATAACTAATTGTTACTGAATAATTGACTGTTACTG
*
31055056 AATAAATAATTGTT-CTGA
1 AATAACTAATTGTTACTGA
31055074 GAGTTAATGA
Statistics
Matches: 190, Mismatches: 38, Indels: 32
0.73 0.15 0.12
Matches are distributed among these distances:
35 8 0.04
36 111 0.58
37 35 0.18
38 1 0.01
39 2 0.01
40 9 0.05
41 2 0.01
44 22 0.12
ACGTcount: A:0.35, C:0.11, G:0.15, T:0.38
Consensus pattern (36 bp):
AATAACTAATTGTTACTGAATAATTGACTGTTACTG
Found at i:31054981 original size:18 final size:18
Alignment explanation
Indices: 31054807--31054972 Score: 151
Period size: 18 Copynumber: 9.2 Consensus size: 18
31054797 TAACTGATTA
31054807 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
*
31054825 TTAC-CAGATAATTGACTG
1 TTACTGA-ATAATTGACTG
*
31054843 TTACTGGAT-ATTAGACTG
1 TTACTGAATAATT-GACTG
* * * *
31054861 TTACTGAATAACTAAATA
1 TTACTGAATAATTGACTG
*
31054879 TTACTGAATAATTGA-TCA
1 TTACTGAATAATTGACT-G
* *
31054897 TTACTGAATAACTGATTG
1 TTACTGAATAATTGACTG
*
31054915 TCACTGAATGAA-TGACTG
1 TTACTGAAT-AATTGACTG
* *
31054933 TTACTGAATAACTTAATTG
1 TTACTGAATAA-TTGACTG
31054952 TTACTGAATAATTGACTG
1 TTACTGAATAATTGACTG
31054970 TTA
1 TTA
31054973 TTGGATAATC
Statistics
Matches: 120, Mismatches: 19, Indels: 18
0.76 0.12 0.11
Matches are distributed among these distances:
17 7 0.06
18 93 0.77
19 20 0.17
ACGTcount: A:0.36, C:0.12, G:0.15, T:0.37
Consensus pattern (18 bp):
TTACTGAATAATTGACTG
Found at i:31059292 original size:62 final size:62
Alignment explanation
Indices: 31059195--31059316 Score: 217
Period size: 62 Copynumber: 2.0 Consensus size: 62
31059185 AAGGAGTTCT
*
31059195 TGCTTCATGTTTGGTTTGGAAGAGGATTAGGAGGAGATTTGGCCATACTTGTATCTAGATCA
1 TGCTTCATGTTTGGTTTGGAAGAGGATTAGGAGGAGATTTGGACATACTTGTATCTAGATCA
* *
31059257 TGCTTCTTGTTTGGTTTGGAAGAGGTTTAGGAGGAGATTTGGACATACTTGTATCTAGAT
1 TGCTTCATGTTTGGTTTGGAAGAGGATTAGGAGGAGATTTGGACATACTTGTATCTAGAT
31059317 AATGGTATGT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
62 57 1.00
ACGTcount: A:0.23, C:0.10, G:0.30, T:0.38
Consensus pattern (62 bp):
TGCTTCATGTTTGGTTTGGAAGAGGATTAGGAGGAGATTTGGACATACTTGTATCTAGATCA
Found at i:31060319 original size:40 final size:39
Alignment explanation
Indices: 31060235--31060419 Score: 194
Period size: 40 Copynumber: 4.6 Consensus size: 39
31060225 TTGAATGATG
* * * *
31060235 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGT-CCGAAGGCATTTGTGC-GAGTTACTAAA
* * *
31060275 TCCGGACTAAGATCCGAAGGCATTTGTGCGAGATACTAAT
1 TCCGGGCTAAG-TCCGAAGGCATTTGTGCGAGTTACTAAA
* *
31060315 TCCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAAA
1 TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
* *
31060354 TCCGGGTTAAGTCCTGAAGGCAATTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCC-GAAGGCATTTGTGCGAGTTACTA-AA
*
31060395 -CCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGT-CCGAAGGCATTTG
31060420 AACGAGTAGC
Statistics
Matches: 121, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
39 36 0.30
40 73 0.60
41 12 0.10
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (39 bp):
TCCGGGCTAAGTCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:31060373 original size:79 final size:81
Alignment explanation
Indices: 31060235--31060419 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
31060225 TTGAATGATG
* *
31060235 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
31060299 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
31060314 TTCCGGGCTAAG-CCCGAAGGCATTTGTG-TGAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCC-GAAGGCA
*
31060376 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
31060394 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
31060420 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 3 0.03
79 56 0.62
80 32 0.35
ACGTcount: A:0.25, C:0.22, G:0.28, T:0.26
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:31060441 original size:79 final size:78
Alignment explanation
Indices: 31060236--31060452 Score: 192
Period size: 79 Copynumber: 2.7 Consensus size: 78
31060226 TGAATGATGT
** * * * * *
31060236 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATTT
1 CCGGGCTAAG-CCCGAAGGCATTTGAAC-GAGTTACTATATCCGG-TTAAGATCCGAAGGCAATT
*
31060300 GTGCGAGATACTAATT
63 GTGCGAGATACTAATA
*** *
31060316 CCGGGCTAAGCCCGAAGGCATTTGTGTGAGTTACTAAATCCGGGTTAAG-TCCTGAAGGCAATTG
1 CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCC-GGTTAAGATCC-GAAGGCAATTG
*
31060380 TGCGAGTTACT-ATAA
64 TGCGAGATACTAAT-A
*
31060395 CCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGCTATATCCGGTTAA-ATTCCGAAGG
1 CCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-CTATATCCGGTTAAGA-TCCGAAGG
31060453 TACGTGATTT
Statistics
Matches: 115, Mismatches: 14, Indels: 17
0.79 0.10 0.12
Matches are distributed among these distances:
78 5 0.04
79 65 0.57
80 45 0.39
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.25
Consensus pattern (78 bp):
CCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTATATCCGGTTAAGATCCGAAGGCAATTGTG
CGAGATACTAATA
Found at i:31073880 original size:3 final size:3
Alignment explanation
Indices: 31073874--31073904 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
31073864 ATAATATTAA
31073874 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
1 ATT ATT ATT ATT ATT ATT ATT ATT ATT ATT A
31073905 CTTCAAAATT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.35, C:0.00, G:0.00, T:0.65
Consensus pattern (3 bp):
ATT
Found at i:31082056 original size:30 final size:30
Alignment explanation
Indices: 31082015--31082072 Score: 82
Period size: 30 Copynumber: 1.9 Consensus size: 30
31082005 GGTGGGATGA
* *
31082015 GAGGAGAGTAAAAGTTTTGTGGGGAAAGTGG
1 GAGGAGAGTAAAAGTATTG-GGGAAAAGTGG
31082046 GAGG-GAGTAAAAGTATTGGGGAAAAGT
1 GAGGAGAGTAAAAGTATTGGGGAAAAGT
31082073 ACAAAAGTTT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
29 8 0.32
30 13 0.52
31 4 0.16
ACGTcount: A:0.36, C:0.00, G:0.43, T:0.21
Consensus pattern (30 bp):
GAGGAGAGTAAAAGTATTGGGGAAAAGTGG
Found at i:31083027 original size:22 final size:22
Alignment explanation
Indices: 31083002--31083043 Score: 66
Period size: 22 Copynumber: 1.9 Consensus size: 22
31082992 ATTTATTAAT
* *
31083002 TTAAAATATTAATTAAAAAAAC
1 TTAAAATATGAAATAAAAAAAC
31083024 TTAAAATATGAAATAAAAAA
1 TTAAAATATGAAATAAAAAA
31083044 TACAAATGTG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
22 18 1.00
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (22 bp):
TTAAAATATGAAATAAAAAAAC
Found at i:31086963 original size:23 final size:23
Alignment explanation
Indices: 31086937--31086982 Score: 92
Period size: 23 Copynumber: 2.0 Consensus size: 23
31086927 ATAGAACGCA
31086937 ATCAATCTAACACAATCACAAAT
1 ATCAATCTAACACAATCACAAAT
31086960 ATCAATCTAACACAATCACAAAT
1 ATCAATCTAACACAATCACAAAT
31086983 TAAGTCATTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 23 1.00
ACGTcount: A:0.52, C:0.26, G:0.00, T:0.22
Consensus pattern (23 bp):
ATCAATCTAACACAATCACAAAT
Found at i:31099950 original size:38 final size:38
Alignment explanation
Indices: 31099908--31100004 Score: 149
Period size: 38 Copynumber: 2.6 Consensus size: 38
31099898 TTTTCTAGCA
*
31099908 TAGTGGTTTGTCATGGGATGTGTTCCTAGTTTGAAGGG
1 TAGTGGTTTGTCATGGGATGTGTCCCTAGTTTGAAGGG
* *
31099946 TAGTGGCTTGTCATGGGATGTGTCCCTAGTTTTAAGGG
1 TAGTGGTTTGTCATGGGATGTGTCCCTAGTTTGAAGGG
* *
31099984 TAGTGGTTTGCCATGAGATGT
1 TAGTGGTTTGTCATGGGATGT
31100005 AAGCCTCTAT
Statistics
Matches: 53, Mismatches: 6, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
38 53 1.00
ACGTcount: A:0.16, C:0.10, G:0.35, T:0.38
Consensus pattern (38 bp):
TAGTGGTTTGTCATGGGATGTGTCCCTAGTTTGAAGGG
Found at i:31106442 original size:172 final size:172
Alignment explanation
Indices: 31106156--31106501 Score: 683
Period size: 172 Copynumber: 2.0 Consensus size: 172
31106146 ATGGTATGAG
*
31106156 TAAGTTCTTTGAGATGGAAGTTGTTTTGATATGCTTGAATATGTGAGTAATTACTAATGTGAATG
1 TAAGTTCTTTGAGATGGAAGTTGTTTTGATATGCTTGAATATGTGAGCAATTACTAATGTGAATG
31106221 GTGAATTGGTATTTGGGGATCAGGAATTATAAATTATCTCTTTAAGTGTTTACTTTGATTAAGGT
66 GTGAATTGGTATTTGGGGATCAGGAATTATAAATTATCTCTTTAAGTGTTTACTTTGATTAAGGT
31106286 AAGTTAATTTGATGTTTATACTATGAGCTTACTAAGCTTCTT
131 AAGTTAATTTGATGTTTATACTATGAGCTTACTAAGCTTCTT
31106328 TAAGTTCTTTGAGATGGAAGTTGTTTTGATATGCTTGAATATGTGAGCAATTACTAATGTGAATG
1 TAAGTTCTTTGAGATGGAAGTTGTTTTGATATGCTTGAATATGTGAGCAATTACTAATGTGAATG
31106393 GTGAATTGGTATTTGGGGATCAGGAATTATAAATTATCTCTTTAAGTGTTTACTTTGATTAAGGT
66 GTGAATTGGTATTTGGGGATCAGGAATTATAAATTATCTCTTTAAGTGTTTACTTTGATTAAGGT
31106458 AAGTTAATTTGATGTTTATACTATGAGCTTACTAAGCTTCTT
131 AAGTTAATTTGATGTTTATACTATGAGCTTACTAAGCTTCTT
31106500 TA
1 TA
31106502 GCTTGTTTCA
Statistics
Matches: 173, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
172 173 1.00
ACGTcount: A:0.29, C:0.07, G:0.21, T:0.43
Consensus pattern (172 bp):
TAAGTTCTTTGAGATGGAAGTTGTTTTGATATGCTTGAATATGTGAGCAATTACTAATGTGAATG
GTGAATTGGTATTTGGGGATCAGGAATTATAAATTATCTCTTTAAGTGTTTACTTTGATTAAGGT
AAGTTAATTTGATGTTTATACTATGAGCTTACTAAGCTTCTT
Found at i:31107390 original size:24 final size:25
Alignment explanation
Indices: 31107343--31107388 Score: 69
Period size: 24 Copynumber: 1.9 Consensus size: 25
31107333 TTATATCTTA
*
31107343 AATTTATTTGTTTATATATGTTTGT
1 AATTTATTTGTTTAAATATGTTTGT
31107368 AATTT-TTTGTTTAAAT-TGTTT
1 AATTTATTTGTTTAAATATGTTT
31107389 TGAAATGAAG
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 5 0.25
24 10 0.50
25 5 0.25
ACGTcount: A:0.24, C:0.00, G:0.11, T:0.65
Consensus pattern (25 bp):
AATTTATTTGTTTAAATATGTTTGT
Found at i:31109284 original size:46 final size:46
Alignment explanation
Indices: 31109216--31109327 Score: 154
Period size: 46 Copynumber: 2.4 Consensus size: 46
31109206 TGATATGTAT
*
31109216 GCTAGTGTAAGACATGTCTGGGACATGCATCAGCCA-CAACATGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATC-GCCATCAACACGAGA
* * ** *
31109262 GCTAGTGTAAGACATGTTTGGGACATGCATCGGCATTGAGACGAGA
1 GCTAGTGTAAGACATGTCTGGGACATGCATCGCCATCAACACGAGA
31109308 GCTAGTGTAAGACATGTCTG
1 GCTAGTGTAAGACATGTCTG
31109328 TGATGTGCAT
Statistics
Matches: 58, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
45 3 0.05
46 55 0.95
ACGTcount: A:0.29, C:0.18, G:0.29, T:0.23
Consensus pattern (46 bp):
GCTAGTGTAAGACATGTCTGGGACATGCATCGCCATCAACACGAGA
Found at i:31109527 original size:50 final size:50
Alignment explanation
Indices: 31109404--31109528 Score: 138
Period size: 45 Copynumber: 2.6 Consensus size: 50
31109394 TGGCGTGTTT
* * *
31109404 GTGTAAGACC-TGTTTGGGACATGGCATCGACACCGATAGATGAGAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCA
* * *
31109453 GTGTAAG---A--TCTAGGACATGGCATCGGC-CTCGCTATATGAAAGCCA
1 GTGTAAGACCATGTCTGGGACATGGCATCGGCAC-CGATAGATGAAAGCCA
31109498 GTGTAAGACCATGTCTGGGACATGGCATCGG
1 GTGTAAGACCATGTCTGGGACATGGCATCGG
31109529 TATCTTAACC
Statistics
Matches: 62, Mismatches: 7, Indels: 13
0.76 0.09 0.16
Matches are distributed among these distances:
44 1 0.02
45 36 0.58
48 1 0.02
49 7 0.11
50 17 0.27
ACGTcount: A:0.27, C:0.21, G:0.30, T:0.22
Consensus pattern (50 bp):
GTGTAAGACCATGTCTGGGACATGGCATCGGCACCGATAGATGAAAGCCA
Found at i:31122506 original size:86 final size:87
Alignment explanation
Indices: 31122362--31122523 Score: 213
Period size: 86 Copynumber: 1.9 Consensus size: 87
31122352 TAATGCCAAC
* * * * * * *
31122362 GTCCCAGACGTGGTCTTACATGTAATTCAGTATCGATGCGTCTGTCCTAGACATGGTCTTATACG
1 GTCCCAAACATGGTCTTACATGTAATTCAGAATCGATGCCTCTGTCCCAGACACGGTCTTACACG
31122427 A-AA-TCAGATATGATGTCGAT
66 ATAATTCAGATATGATGTCGAT
*
31122447 GTCCCAAACATGGTCTTACATGTAAATTTCA-AATCGATGCCTGTGTCCCAGACACGGTCTTACA
1 GTCCCAAACATGGTCTTACATGT-AA-TTCAGAATCGATGCCTCTGTCCCAGACACGGTCTTACA
31122511 CGATAATTCAGAT
64 CGATAATTCAGAT
31122524 TAATACCAAT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
85 21 0.32
86 32 0.49
87 6 0.09
88 6 0.09
ACGTcount: A:0.28, C:0.22, G:0.20, T:0.30
Consensus pattern (87 bp):
GTCCCAAACATGGTCTTACATGTAATTCAGAATCGATGCCTCTGTCCCAGACACGGTCTTACACG
ATAATTCAGATATGATGTCGAT
Done.