Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: At_chr12
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 101062743
ACGTcount: A:0.31, C:0.17, G:0.17, T:0.31
Warning! 4026412 characters in sequence are not A, C, G, or T
File 95 of 297
Found at i:34336629 original size:40 final size:40
Alignment explanation
Indices: 34336585--34336846 Score: 337
Period size: 39 Copynumber: 6.7 Consensus size: 40
34336575 GCTCCTCGTT
* *
34336585 CAAATGCCTTCGGGACATAGCCCGG-TTATAGTAAT-TCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAAT-TAGT-ATCTCGCA
* * *
34336625 CAAATGCCTTCGGGACTTAACCCGGATTTAGTAACTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
34336665 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
34336704 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
34336743 CAAATGCCTTCGGG-CTTAGCCCGGAATTAGTATCTCGCA
1 CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
* *
34336782 CAAATGCCTTC-GGATCTTAGTCCGGATATT-GTCA-CTTAGCA
1 CAAATGCCTTCGGGA-CTTAGCCCGGA-ATTAGT-ATC-TCGCA
34336823 C-AA-GCCTTCGGGACTTAGCCCGGA
1 CAAATGCCTTCGGGACTTAGCCCGGA
34336847 CATCATTCAA
Statistics
Matches: 205, Mismatches: 9, Indels: 17
0.89 0.04 0.07
Matches are distributed among these distances:
38 2 0.01
39 128 0.62
40 64 0.31
41 11 0.05
ACGTcount: A:0.24, C:0.27, G:0.23, T:0.26
Consensus pattern (40 bp):
CAAATGCCTTCGGGACTTAGCCCGGAATTAGTATCTCGCA
Found at i:34340665 original size:13 final size:14
Alignment explanation
Indices: 34340644--34340676 Score: 50
Period size: 13 Copynumber: 2.4 Consensus size: 14
34340634 GTGATAAATA
*
34340644 AAATATGCATT-TT
1 AAATTTGCATTATT
34340657 AAATTTGCATTATT
1 AAATTTGCATTATT
34340671 AAATTT
1 AAATTT
34340677 AATGGCTTTA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 10 0.56
14 8 0.44
ACGTcount: A:0.39, C:0.06, G:0.06, T:0.48
Consensus pattern (14 bp):
AAATTTGCATTATT
Found at i:34341324 original size:47 final size:47
Alignment explanation
Indices: 34341257--34341402 Score: 240
Period size: 47 Copynumber: 3.1 Consensus size: 47
34341247 TAAGTTGAAT
34341257 TTAAAGCTTGTTAAA-TTGCTCTTAATATTTCCGGATAAGTTACTTAG
1 TTAAA-CTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
*
34341304 TTAAACTTGTTAAATTTGCTCTTAATATTTCCAGATAAGTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
* * *
34341351 TTAAGCTTGTTAAATTTGCTTTTAATATTTTCGGATAAGTTACTTAG
1 TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
34341398 TTAAA
1 TTAAA
34341403 GAAAATTTTA
Statistics
Matches: 92, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
46 9 0.10
47 83 0.90
ACGTcount: A:0.31, C:0.11, G:0.13, T:0.45
Consensus pattern (47 bp):
TTAAACTTGTTAAATTTGCTCTTAATATTTCCGGATAAGTTACTTAG
Found at i:34342268 original size:45 final size:45
Alignment explanation
Indices: 34342204--34342422 Score: 288
Period size: 45 Copynumber: 5.0 Consensus size: 45
34342194 ATATCGCACA
* * * *
34342204 ATACTATTCGGGCCTTTGAGCCTAGTAGGCTATACTGCCGGTGAG
1 ATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
*
34342249 ATACTATTCAGGCCTTTGAGCCTAGCAGGCTATAATGCCGGTGAG
1 ATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
*
34342294 ATACTATTCAGG-CTTCGAGCCTAGCAGGC-AAAATGCCGGTGAG
1 ATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
* *
34342337 ATACTATTCAGGCATTCGAGCCTAGCAGGCTATAATGCCGGTGAA
1 ATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
* * *
34342382 ATGA-TA-TC-GGGCTTCGAGCCTAGCAGGCGA-AATACCGGTGA
1 AT-ACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGA
34342423 ATGAATTTAG
Statistics
Matches: 159, Mismatches: 12, Indels: 9
0.88 0.07 0.05
Matches are distributed among these distances:
42 10 0.06
43 44 0.28
44 34 0.21
45 70 0.44
46 1 0.01
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (45 bp):
ATACTATTCAGGCCTTCGAGCCTAGCAGGCTATAATGCCGGTGAG
Found at i:34342358 original size:88 final size:88
Alignment explanation
Indices: 34342203--34342422 Score: 309
Period size: 88 Copynumber: 2.5 Consensus size: 88
34342193 AATATCGCAC
* * * * * *
34342203 AATACTATTCGGGCCTTTGAGCCTAGTAGGCTATACTGCCGGTGAGATACTATTCAGGCCTTTGA
1 AATACTATTCGGG-CTTCGAGCCTAGCAGGC-AAAATGCCGGTGAGATACTATTCAGGCATTCGA
34342268 GCCTAGCAGGCTATAATGCCGGTGA
64 GCCTAGCAGGCTATAATGCCGGTGA
* *
34342293 GATACTATTCAGGCTTCGAGCCTAGCAGGCAAAATGCCGGTGAGATACTATTCAGGCATTCGAGC
1 AATACTATTCGGGCTTCGAGCCTAGCAGGCAAAATGCCGGTGAGATACTATTCAGGCATTCGAGC
34342358 CTAGCAGGCTATAATGCCGGTGA
66 CTAGCAGGCTATAATGCCGGTGA
* *
34342381 AATGA-TA-TCGGGCTTCGAGCCTAGCAGGCGAAATACCGGTGA
1 AAT-ACTATTCGGGCTTCGAGCCTAGCAGGCAAAATGCCGGTGA
34342423 ATGAATTTAG
Statistics
Matches: 117, Mismatches: 12, Indels: 5
0.87 0.09 0.04
Matches are distributed among these distances:
87 32 0.27
88 58 0.50
89 16 0.14
90 11 0.09
ACGTcount: A:0.26, C:0.22, G:0.28, T:0.24
Consensus pattern (88 bp):
AATACTATTCGGGCTTCGAGCCTAGCAGGCAAAATGCCGGTGAGATACTATTCAGGCATTCGAGC
CTAGCAGGCTATAATGCCGGTGA
Found at i:34342979 original size:16 final size:18
Alignment explanation
Indices: 34342948--34342980 Score: 52
Period size: 16 Copynumber: 1.9 Consensus size: 18
34342938 AACTCGTCAC
34342948 ACTATCTATCATTTTGGT
1 ACTATCTATCATTTTGGT
34342966 ACTA-CTAT-ATTTTGG
1 ACTATCTATCATTTTGG
34342981 AGCTTGCATG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
17 4 0.27
18 4 0.27
ACGTcount: A:0.24, C:0.15, G:0.12, T:0.48
Consensus pattern (18 bp):
ACTATCTATCATTTTGGT
Found at i:34348639 original size:47 final size:47
Alignment explanation
Indices: 34348580--34348709 Score: 152
Period size: 47 Copynumber: 2.8 Consensus size: 47
34348570 TAAATCGATA
* * * *
34348580 AGTAGCTATACCATGGCCAATAGCCCAATCAAGGTAACTTATCCCGG
1 AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCCCGG
* * * * *
34348627 AGTACCTATACCAAGGCCCGTAGCCAAATCAAGGTAACTCCTCTCTG
1 AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCCCGG
* * *
34348674 AATACCTATACCATGGCCTGTAGCTAAATCAAGGTA
1 AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTA
34348710 TTATTCTCAC
Statistics
Matches: 70, Mismatches: 13, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.32, C:0.28, G:0.18, T:0.22
Consensus pattern (47 bp):
AGTACCTATACCATGGCCAGTAGCCAAATCAAGGTAACTCATCCCGG
Found at i:34357415 original size:39 final size:40
Alignment explanation
Indices: 34357211--34357433 Score: 227
Period size: 40 Copynumber: 5.6 Consensus size: 40
34357201 TTGAATGCTG
* * * * * *
34357211 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGC-GAGTTACTAAA
** * * *
34357251 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTCGTGCGAGTTACTAAA
*
34357291 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* **
34357331 TCCGGGTTAAGTCCCGAAGGCATTCATGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* *
34357371 TCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
* * *
34357410 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATT
34357434 TGAACGAGGA
Statistics
Matches: 159, Mismatches: 21, Indels: 7
0.85 0.11 0.04
Matches are distributed among these distances:
39 34 0.21
40 117 0.74
41 8 0.05
ACGTcount: A:0.25, C:0.21, G:0.27, T:0.26
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAA
Found at i:34357453 original size:79 final size:79
Alignment explanation
Indices: 34357286--34357468 Score: 219
Period size: 79 Copynumber: 2.3 Consensus size: 79
34357276 GTGCGAGATA
* * *
34357286 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAATCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
**
34357351 CATTCATGCGAGTTG
66 CATT-ATGCGAGGAG
* * * *
34357366 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
34357430 CATT-TGAACGAGGAG
66 CATTATG--CGAGGAG
* *
34357445 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
34357469 TACGTGATTT
Statistics
Matches: 88, Mismatches: 13, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
77 2 0.02
78 14 0.16
79 45 0.51
80 27 0.31
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTATGCGAGGAG
Found at i:34358836 original size:26 final size:27
Alignment explanation
Indices: 34358782--34359083 Score: 86
Period size: 27 Copynumber: 11.3 Consensus size: 27
34358772 TTACATGGTC
* **
34358782 ATTTTTCACTACAAGGGTATTTCGGTA
1 ATTTTACACTACAAGGGTATTTCAATA
*
34358809 ATTTTACACTACAAGGTTA-TTCAATA
1 ATTTTACACTACAAGGGTATTTCAATA
* ** * *
34358835 ATTTTACA-AATCGGGGGTGTTTCAGTA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * ***
34358862 ATTTTACA-AATCGAGGGTATTT-GGGA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * * **
34358888 GTTTTACA-AATCGAGGGTATTTCGGTA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * * *
34358915 ATTTTACA-AATCAATGGTGTTTCAGTA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * * * *
34358942 ATTTCACA-AATCGAGGGTGTTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * * *
34358969 ATTTCACA-AATCAGGGGTATTTCGATA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * *
34358996 ATTTTACA-AATCGAGGGTATTTCAGTA
1 ATTTTACACTA-CAAGGGTATTTCAATA
* * * *
34359023 ATTTCACAAT-CGAGGGTATTTCGATA
1 ATTTTACACTACAAGGGTATTTCAATA
* *
34359049 ATTTTACA-AATCGAGGGTATTTCAATA
1 ATTTTACACTA-CAAGGGTATTTCAATA
34359076 ATTTTACA
1 ATTTTACA
34359084 AACCAGGGGT
Statistics
Matches: 228, Mismatches: 41, Indels: 12
0.81 0.15 0.04
Matches are distributed among these distances:
25 1 0.00
26 61 0.27
27 166 0.73
ACGTcount: A:0.31, C:0.13, G:0.19, T:0.37
Consensus pattern (27 bp):
ATTTTACACTACAAGGGTATTTCAATA
Found at i:34358865 original size:27 final size:27
Alignment explanation
Indices: 34358828--34359294 Score: 414
Period size: 27 Copynumber: 17.4 Consensus size: 27
34358818 TACAAGGTTA
* *
34358828 TTCAATAATTTTACAAATCGGGGGTGT
1 TTCAGTAATTTTACAAATCGGGGGTAT
*
34358855 TTCAGTAATTTTACAAATCGAGGGTAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
* * * *
34358882 TT-GGGAGTTTTACAAATCGAGGGTAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
* *** *
34358908 TTCGGTAATTTTACAAATCAATGGTGT
1 TTCAGTAATTTTACAAATCGGGGGTAT
* * *
34358935 TTCAGTAATTTCACAAATCGAGGGTGT
1 TTCAGTAATTTTACAAATCGGGGGTAT
* *
34358962 TTC-GATAATTTCACAAATCAGGGGTAT
1 TTCAG-TAATTTTACAAATCGGGGGTAT
*
34358989 TTC-GATAATTTTACAAATCGAGGGTAT
1 TTCAG-TAATTTTACAAATCGGGGGTAT
* *
34359016 TTCAGTAATTTCAC-AATCGAGGGTAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
*
34359042 TTC-GATAATTTTACAAATCGAGGGTAT
1 TTCAG-TAATTTTACAAATCGGGGGTAT
* * *
34359069 TTCAATAATTTTACAAACCAGGGGTAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
*
34359096 TT-AGGTAATTTTATAAA-CTGGGGGTAT
1 TTCA-GTAATTTTACAAATC-GGGGGTAT
* * * *
34359123 TTTAGTAATTTTACAAATCAGAGATAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
* * *
34359150 TTCAATAATTTTACAAA-CCGAGGTAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
* *
34359176 TTCGGTAATTTTACAAATTGGGGGTAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
** * **
34359203 TTTGGTAATTTTACAAACCAAGGGTAT
1 TTCAGTAATTTTACAAATCGGGGGTAT
*
34359230 TTC-GATAATTTTACAAATCGGGGGTAC
1 TTCAG-TAATTTTACAAATCGGGGGTAT
**
34359257 TTC-GATAATTTTACAAATTAGGGGTAT
1 TTCAG-TAATTTTACAAATCGGGGGTAT
*
34359284 TTCGGTAATTT
1 TTCAGTAATTT
34359295 CTCTTTATTA
Statistics
Matches: 371, Mismatches: 56, Indels: 26
0.82 0.12 0.06
Matches are distributed among these distances:
25 1 0.00
26 72 0.19
27 294 0.79
28 4 0.01
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (27 bp):
TTCAGTAATTTTACAAATCGGGGGTAT
Found at i:34359072 original size:134 final size:135
Alignment explanation
Indices: 34358795--34359295 Score: 547
Period size: 134 Copynumber: 3.7 Consensus size: 135
34358785 TTTCACTACA
* * * * *
34358795 AGGGTATTTCGGTAATTTTACACTACAAGGTTA-TTCAATAATTTTACAAATCGGGGGTGTTTC-
1 AGGGTATTTCAGTAATTTTACA-AACAAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCG
* * * *
34358858 AGTAATTTTACAAATCGAGGGTATTT-GGGAGTTTTACAAATCGAGGGTATTTCGGTAATTTTAC
65 AGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGGTAATTTTAC
*
34358922 AAATCA
130 AAATCG
* * * * * * *
34358928 ATGGTGTTTCAGTAATTTCACAAATCGAGGGTGTTTCGATAATTTCACAAATCAGGGGTATTTCG
1 AGGGTATTTCAGTAATTTTACAAA-CAAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCG
*
34358993 A-TAATTTTACAAATCGAGGGTATTTCAGTAATTTCAC-AATCGAGGGTATTTCGATAATTTTAC
65 AGTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGGTAATTTTAC
34359056 AAATCG
130 AAATCG
* * * * *
34359062 AGGGTATTTCAATAATTTTACAAACCAGGGGTATTTAGGTAATTTTATAAA-CTGGGGGTATTT-
1 AGGGTATTTCAGTAATTTTACAAA-CAAGGGTATTTCGATAATTTTACAAATC-GGGGGTATTTC
* * * * *
34359125 TAGTAATTTTACAAATC-AGAGATATTTCAATAATTTTACAAACCGA-GGTATTTCGGTAATTTT
64 GAGTAATTTTACAAATCGAG-GGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGGTAATTTT
*
34359188 ACAAATTG
128 ACAAATCG
* ** *
34359196 GGGGTATTTTGGTAATTTTACAAACCAAGGGTATTTCGATAATTTTACAAATCGGGGGTACTTCG
1 AGGGTATTTCAGTAATTTTACAAA-CAAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCG
* *
34359261 A-TAATTTTACAAAT-TAGGGGTATTTCGGTAATTTC
65 AGTAATTTTACAAATCGA-GGGTATTTCAGTAATTTC
34359296 TCTTTATTAT
Statistics
Matches: 304, Mismatches: 52, Indels: 23
0.80 0.14 0.06
Matches are distributed among these distances:
132 1 0.00
133 27 0.09
134 260 0.86
135 16 0.05
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (135 bp):
AGGGTATTTCAGTAATTTTACAAACAAGGGTATTTCGATAATTTTACAAATCGGGGGTATTTCGA
GTAATTTTACAAATCGAGGGTATTTCAGTAATTTCACAAATCGAGGGTATTTCGGTAATTTTACA
AATCG
Found at i:34359265 original size:107 final size:107
Alignment explanation
Indices: 34358795--34359294 Score: 485
Period size: 107 Copynumber: 4.7 Consensus size: 107
34358785 TTTCACTACA
* * * * *
34358795 AGGGTATTTCGGTAATTTTAC-ACTACAAGGTTA-TTCAATAATTTTACAAATCGGGGGTGTTTC
1 AGGGTATTTCGATAATTTTACAAAT-CAAGGGTATTTCAATAATTTTACAAATC-GAGGTATTTC
* * * *
34358858 AGTAATTTTACAAATC-GAGGGTA-TTTGGGAGTTTTACAAATCG
64 GGTAATTTTACAAATCAG-GGGTATTTTGGTAATTTTACAAACCG
* * * * * *
34358901 AGGGTATTTCGGTAATTTTACAAATCAATGGTGTTTCAGTAATTTCACAAATCGAGGGTGTTTCG
1 AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCGA-GGTATTTCG
* * * * *
34358966 ATAATTTCACAAATCAGGGGTATTTCGATAATTTTACAAATCG
65 GTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCG
* * *
34359009 AGGGTATTTC-AGTAATTTCAC-AATCGAGGGTATTTCGATAATTTTACAAATCGAGGGTATTTC
1 AGGGTATTTCGA-TAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCGA-GGTATTTC
** * * * *
34359072 AATAATTTTACAAACCAGGGGTATTTAGGTAATTTTATAAACTG
64 GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCG
* * * *
34359116 GGGGTATTT-TAGTAATTTTACAAATC-AGAGATATTTCAATAATTTTACAAACCGAGGTATTTC
1 AGGGTATTTCGA-TAATTTTACAAATCAAG-GGTATTTCAATAATTTTACAAATCGAGGTATTTC
** *
34359179 GGTAATTTTACAAATTGGGGGTATTTTGGTAATTTTACAAACCA
64 GGTAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCG
** * * * *
34359223 AGGGTATTTCGATAATTTTACAAATCGGGGGTACTTCGATAATTTTACAAATTAGGGGTATTTCG
1 AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAA-TCGAGGTATTTCG
34359288 GTAATTT
65 GTAATTT
34359295 CTCTTTATTA
Statistics
Matches: 328, Mismatches: 54, Indels: 22
0.81 0.13 0.05
Matches are distributed among these distances:
106 27 0.08
107 220 0.67
108 81 0.25
ACGTcount: A:0.32, C:0.11, G:0.20, T:0.37
Consensus pattern (107 bp):
AGGGTATTTCGATAATTTTACAAATCAAGGGTATTTCAATAATTTTACAAATCGAGGTATTTCGG
TAATTTTACAAATCAGGGGTATTTTGGTAATTTTACAAACCG
Found at i:34359658 original size:27 final size:28
Alignment explanation
Indices: 34359599--34359683 Score: 127
Period size: 27 Copynumber: 3.0 Consensus size: 28
34359589 CTTATTCCTT
* *
34359599 TGGCCCATTTAGGCCCAATCTCGTTCATA
1 TGGCCCA-TTAGGCCCAATCACATTCATA
34359628 TGGCCCATTAGGCCCAA-CACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
*
34359655 TGGCCCATGAGGCCCAATCACATTCATA
1 TGGCCCATTAGGCCCAATCACATTCATA
34359683 T
1 T
34359684 CACCCATCAC
Statistics
Matches: 52, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
27 24 0.46
28 21 0.40
29 7 0.13
ACGTcount: A:0.26, C:0.32, G:0.16, T:0.26
Consensus pattern (28 bp):
TGGCCCATTAGGCCCAATCACATTCATA
Found at i:34359689 original size:28 final size:28
Alignment explanation
Indices: 34359599--34359699 Score: 114
Period size: 28 Copynumber: 3.6 Consensus size: 28
34359589 CTTATTCCTT
* * *
34359599 TGGCCCATTTAGGCCCAATCTCGTTCATA
1 TGGCCCA-TCAGGCCCAATCACATTCATA
*
34359628 TGGCCCATTAGGCCCAA-CACATTCATA
1 TGGCCCATCAGGCCCAATCACATTCATA
*
34359655 TGGCCCATGAGGCCCAATCACATTCATA
1 TGGCCCATCAGGCCCAATCACATTCATA
** *
34359683 TCACCCATCACGCCCAA
1 TGGCCCATCAGGCCCAA
34359700 CTACTTCCCA
Statistics
Matches: 64, Mismatches: 7, Indels: 3
0.86 0.09 0.04
Matches are distributed among these distances:
27 24 0.38
28 33 0.52
29 7 0.11
ACGTcount: A:0.27, C:0.36, G:0.15, T:0.23
Consensus pattern (28 bp):
TGGCCCATCAGGCCCAATCACATTCATA
Found at i:34364324 original size:22 final size:21
Alignment explanation
Indices: 34364276--34364316 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
34364266 TGTTTTGAAT
* *
34364276 TTTTACAAAATGTGTCGATAA
1 TTTTACAAAAAGTATCGATAA
34364297 TTTTACAAAAAGTATCGATA
1 TTTTACAAAAAGTATCGATA
34364317 CCTTTTACCA
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.41, C:0.10, G:0.12, T:0.37
Consensus pattern (21 bp):
TTTTACAAAAAGTATCGATAA
Found at i:34365242 original size:21 final size:21
Alignment explanation
Indices: 34365212--34365253 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
34365202 AGATTCCCAG
* *
34365212 CCCATTCCAACCAATACACCA
1 CCCATACCAACCAACACACCA
34365233 CCCATACCAACCAACACACCA
1 CCCATACCAACCAACACACCA
34365254 TGTAGGGATA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.40, C:0.50, G:0.00, T:0.10
Consensus pattern (21 bp):
CCCATACCAACCAACACACCA
Found at i:34365655 original size:26 final size:27
Alignment explanation
Indices: 34365608--34365659 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
34365598 CATTCTACCA
34365608 TACAGGGGTATTACGGTCATTTTACAC
1 TACAGGGGTATTACGGTCATTTTACAC
** *
34365635 TACA-GGGTATTTTGGTGATTTTACA
1 TACAGGGGTATTACGGTCATTTTACA
34365660 AACTGGGGTC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 18 0.82
27 4 0.18
ACGTcount: A:0.25, C:0.13, G:0.23, T:0.38
Consensus pattern (27 bp):
TACAGGGGTATTACGGTCATTTTACAC
Found at i:34368501 original size:41 final size:41
Alignment explanation
Indices: 34368406--34368511 Score: 133
Period size: 41 Copynumber: 2.6 Consensus size: 41
34368396 TGACAAATCA
* *
34368406 GCTATATGTGGCACTTAATGTGC-AAATCGACATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAAATCGACATAGCTTCG
* * * *
34368446 GCTACATATGGCACTTAGTGTGCGAGATTGAGATAGCTTCG
1 GCTATATATGGCACTTAGTGTGCGAAATCGACATAGCTTCG
* *
34368487 GCTATATATAGCACTAAGTGTGCGA
1 GCTATATATGGCACTTAGTGTGCGA
34368512 TGGATGGCAC
Statistics
Matches: 56, Mismatches: 9, Indels: 1
0.85 0.14 0.02
Matches are distributed among these distances:
40 20 0.36
41 36 0.64
ACGTcount: A:0.27, C:0.18, G:0.25, T:0.29
Consensus pattern (41 bp):
GCTATATATGGCACTTAGTGTGCGAAATCGACATAGCTTCG
Found at i:34372272 original size:13 final size:13
Alignment explanation
Indices: 34372244--34372374 Score: 57
Period size: 11 Copynumber: 10.1 Consensus size: 13
34372234 TTATTTGTTT
34372244 TATTTTTA-ATCT-
1 TATTTTTATAT-TA
34372256 TATTTTTATATTA
1 TATTTTTATATTA
*
34372269 TA-TTATATAATTA
1 TATTTTTAT-ATTA
34372282 TTTGATTATTTATTATTCA
1 --T-ATT-TTTA-TATT-A
34372301 TATTATTTATA-TA
1 TATT-TTTATATTA
*
34372314 TA-TTATATA-T-
1 TATTTTTATATTA
34372324 TATTTTTATATATA
1 TATTTTTATAT-TA
**
34372338 TATTTTCGTATTA
1 TATTTTTATATTA
*
34372351 TA-TATTATATT-
1 TATTTTTATATTA
34372362 TA-TTTTATATTA
1 TATTTTTATATTA
34372374 T
1 T
34372375 TATGTCATTT
Statistics
Matches: 94, Mismatches: 10, Indels: 30
0.70 0.07 0.22
Matches are distributed among these distances:
10 2 0.02
11 22 0.23
12 22 0.23
13 16 0.17
14 10 0.11
15 3 0.03
16 9 0.10
17 2 0.02
18 6 0.06
19 2 0.02
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (13 bp):
TATTTTTATATTA
Found at i:34372283 original size:16 final size:16
Alignment explanation
Indices: 34372264--34372335 Score: 52
Period size: 16 Copynumber: 4.9 Consensus size: 16
34372254 CTTATTTTTA
34372264 TATTATATTATATAAT
1 TATTATATTATATAAT
*
34372280 TATT-TGATTAT-TTAT
1 TATTAT-ATTATATAAT
*
34372295 TATTCATATTAT-TTA-
1 TATT-ATATTATATAAT
34372310 TA-TATATTATAT-AT
1 TATTATATTATATAAT
34372324 TATT-T-TTATATA
1 TATTATATTATATA
34372336 TATATTTTCG
Statistics
Matches: 48, Mismatches: 1, Indels: 16
0.74 0.02 0.25
Matches are distributed among these distances:
13 14 0.29
14 5 0.10
15 11 0.23
16 17 0.35
17 1 0.02
ACGTcount: A:0.36, C:0.01, G:0.01, T:0.61
Consensus pattern (16 bp):
TATTATATTATATAAT
Found at i:34372289 original size:8 final size:7
Alignment explanation
Indices: 34372255--34372342 Score: 58
Period size: 7 Copynumber: 12.3 Consensus size: 7
34372245 ATTTTTAATC
34372255 TTATT-T
1 TTATTAT
34372261 TTA-TAT
1 TTATTAT
34372267 TATATTAT
1 T-TATTAT
*
34372275 ATAATTAT
1 -TTATTAT
34372283 TTGATTAT
1 TT-ATTAT
34372291 TTATTAT
1 TTATTAT
34372298 TCATATTAT
1 T--TATTAT
34372307 TTA-TAT
1 TTATTAT
*
34372313 ATATTAT
1 TTATTAT
*
34372320 ATATTAT
1 TTATTAT
34372327 TT-TTAT
1 TTATTAT
*
34372333 ATATATAT
1 TTAT-TAT
34372341 TT
1 TT
34372343 TCGTATTATA
Statistics
Matches: 66, Mismatches: 6, Indels: 18
0.73 0.07 0.20
Matches are distributed among these distances:
5 1 0.02
6 15 0.23
7 23 0.35
8 19 0.29
9 8 0.12
ACGTcount: A:0.34, C:0.01, G:0.01, T:0.64
Consensus pattern (7 bp):
TTATTAT
Found at i:34372292 original size:32 final size:33
Alignment explanation
Indices: 34372255--34372374 Score: 108
Period size: 32 Copynumber: 3.6 Consensus size: 33
34372245 ATTTTTAATC
*
34372255 TTATTTTTATAT-TATATTATATA-ATTATTTGA
1 TTATTTTTATATATATATTATATATATTATAT-A
34372287 TTATTTATTAT-TCATATTATTTATATATATTATATA
1 TTATTT-TTATAT-ATA-TA-TTATATATATTATATA
*
34372323 TTATTTTTATATATATATT-T-TCGTATTATATA
1 TTATTTTTATATATATATTATAT-ATATTATATA
* *
34372355 TTATATTTAT-TTTATATTAT
1 TTATTTTTATATATATATTAT
34372375 TATGTCATTT
Statistics
Matches: 75, Mismatches: 4, Indels: 18
0.77 0.04 0.19
Matches are distributed among these distances:
31 8 0.11
32 27 0.36
33 6 0.08
34 4 0.05
35 9 0.12
36 15 0.20
37 6 0.08
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (33 bp):
TTATTTTTATATATATATTATATATATTATATA
Found at i:34372306 original size:9 final size:9
Alignment explanation
Indices: 34372261--34372421 Score: 58
Period size: 9 Copynumber: 18.6 Consensus size: 9
34372251 AATCTTATTT
34372261 TTATATTATA
1 TTAT-TTATA
*
34372271 TTATATA-A
1 TTATTTATA
*
34372279 TTATTT-GA
1 TTATTTATA
34372287 TTA-TT-TA
1 TTATTTATA
*
34372294 TTATTCATA
1 TTATTTATA
34372303 TTATTTATA
1 TTATTTATA
34372312 TATATTATATA
1 T-TATT-TATA
*
34372323 TTATTTTTA
1 TTATTTATA
*
34372332 -TATATATA
1 TTATTTATA
**
34372340 TT-TTCGTA
1 TTATTTATA
*
34372348 TTATATAT-
1 TTATTTATA
*
34372356 TATATTTATT
1 T-TATTTATA
*
34372366 TTATAT-TA
1 TTATTTATA
*
34372374 TTATGTCAT-
1 TTAT-TTATA
34372383 TTATTTTATA
1 TTA-TTTATA
*
34372393 CTA-TTATA
1 TTATTTATA
*
34372401 -TATTT-TT
1 TTATTTATA
*
34372408 TTATCTATA
1 TTATTTATA
34372417 TTATT
1 TTATT
34372422 ATTATCAAAA
Statistics
Matches: 110, Mismatches: 25, Indels: 33
0.65 0.15 0.20
Matches are distributed among these distances:
7 9 0.08
8 39 0.35
9 40 0.36
10 17 0.15
11 5 0.05
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (9 bp):
TTATTTATA
Found at i:34372307 original size:48 final size:47
Alignment explanation
Indices: 34372255--34372426 Score: 124
Period size: 45 Copynumber: 3.6 Consensus size: 47
34372245 ATTTTTAATC
*
34372255 TTATTTTTATATTATATTATATAATTATTTGATTATTTATTATTCATA
1 TTATTTTTATATTATATTATAT-ATTATTTCATTATTTATTATTCATA
* * *
34372303 TTA--TTTATA-TATATTATATATTATTTTTATATATATATT-TTCGTA
1 TTATTTTTATATTATATTATATATTA-TTTCAT-TATTTATTATTCATA
* * *
34372348 TTATATATTATATTTATTTTATATTATTATGTCATTTATTTTATACTATT-ATA
1 TTAT-TTTTATA-TTATATTATA-TATTATTTCA-TTA-TTTAT--TATTCATA
*
34372401 -TATTTTTTTATCTATATTAT-TATTAT
1 TTATTTTTATAT-TATATTATATATTAT
34372427 CAAAAGTTTT
Statistics
Matches: 98, Mismatches: 12, Indels: 27
0.72 0.09 0.20
Matches are distributed among these distances:
44 4 0.04
45 23 0.23
46 13 0.13
48 8 0.08
49 6 0.06
50 14 0.14
51 22 0.22
52 3 0.03
53 3 0.03
54 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (47 bp):
TTATTTTTATATTATATTATATATTATTTCATTATTTATTATTCATA
Found at i:34372310 original size:20 final size:20
Alignment explanation
Indices: 34372256--34372426 Score: 117
Period size: 22 Copynumber: 8.3 Consensus size: 20
34372246 TTTTTAATCT
34372256 TATT-TTTATATTATATTATA
1 TATTATTTATA-TATATTATA
*
34372276 TAATTATTTGATTATTTATTATTCA
1 T-ATTATTT-A-TATATATTA-T-A
34372301 TATTATTTATATATATTATA
1 TATTATTTATATATATTATA
34372321 TATTATTT-T-TATA-TATA
1 TATTATTTATATATATTATA
34372338 TATT-TTCGTATTATATATTATA
1 TATTATT--TA-TATATATTATA
*
34372360 T-TTATTT-TATATTATTATG
1 TATTATTTATATA-TATTATA
34372379 TCATTTATTT-TATACTATTATA
1 T-A-TTATTTATATA-TATTATA
* *
34372401 TATTTTTTTATCTATATTAT-
1 TA-TTATTTATATATATTATA
34372421 TATTAT
1 TATTAT
34372427 CAAAAGTTTT
Statistics
Matches: 125, Mismatches: 8, Indels: 37
0.74 0.05 0.22
Matches are distributed among these distances:
16 2 0.02
17 8 0.06
18 9 0.07
19 11 0.09
20 14 0.11
21 23 0.18
22 38 0.30
23 8 0.06
24 10 0.08
25 2 0.02
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (20 bp):
TATTATTTATATATATTATA
Found at i:34372316 original size:45 final size:44
Alignment explanation
Indices: 34372234--34372328 Score: 122
Period size: 45 Copynumber: 2.1 Consensus size: 44
34372224 TATAAATTTT
* *
34372234 TTATTTGTTTTATTTTTAATCTTATTTTTATATTATATTATATAA
1 TTATTTGTATTATTTTTAATCATATTTTTATATTATATTATAT-A
*
34372279 TTATTTG-ATTATTTATTATTCATATTATTTATA-TATATTATATA
1 TTATTTGTATTATTT-TTAATCATATT-TTTATATTATATTATATA
34372323 TTATTT
1 TTATTT
34372329 TTATATATAT
Statistics
Matches: 45, Mismatches: 3, Indels: 5
0.85 0.06 0.09
Matches are distributed among these distances:
44 13 0.29
45 26 0.58
46 6 0.13
ACGTcount: A:0.31, C:0.02, G:0.02, T:0.65
Consensus pattern (44 bp):
TTATTTGTATTATTTTTAATCATATTTTTATATTATATTATATA
Found at i:34372340 original size:24 final size:24
Alignment explanation
Indices: 34372255--34372423 Score: 100
Period size: 24 Copynumber: 6.9 Consensus size: 24
34372245 ATTTTTAATC
34372255 TTATTTTTATAT-TATATTATATAA
1 TTATTTTTATATATATATTATAT-A
* *
34372279 TTA-TTTGAT-TATTTATTAT-TCA
1 TTATTTTTATATATATATTATAT-A
*
34372301 -TATTATT-TATATATATTATATA
1 TTATTTTTATATATATATTATATA
* *
34372323 TTATTTTTATATATATATTTTCGTA
1 TTATTTTTATATATATATTAT-ATA
* * *
34372348 TTATATATTATATTTATTTTATATTA
1 TTAT-TTTTATATATATATTATA-TA
*
34372374 TTATGTCATTTATTTTATACTATTATATA
1 TTAT-T--TTTA-TATATA-TATTATATA
*
34372403 TT-TTTTTATCTATATTATTAT
1 TTATTTTTATATATA-TATTAT
34372424 TATCAAAAGT
Statistics
Matches: 111, Mismatches: 21, Indels: 26
0.70 0.13 0.16
Matches are distributed among these distances:
21 3 0.03
22 15 0.14
23 19 0.17
24 25 0.23
25 10 0.09
26 20 0.18
27 1 0.01
28 4 0.04
29 8 0.07
30 6 0.05
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.63
Consensus pattern (24 bp):
TTATTTTTATATATATATTATATA
Found at i:34372377 original size:13 final size:13
Alignment explanation
Indices: 34372259--34372377 Score: 56
Period size: 13 Copynumber: 9.1 Consensus size: 13
34372249 TTAATCTTAT
34372259 TTTTATATTA-TA
1 TTTTATATTATTA
*
34372271 TTATATAATTATTTGA
1 TTTTAT-ATTA-TT-A
34372287 TTATT-TATTATTCA
1 TT-TTATATTATT-A
*
34372301 TATTAT-TTATATA
1 TTTTATATTAT-TA
*
34372314 TATTATA-TATTA
1 TTTTATATTATTA
34372326 TTTT-TATATATATA
1 TTTTATAT-TAT-TA
*
34372340 TTTTCGTATTA-TA
1 TTTT-ATATTATTA
*
34372353 TATTATA-T-TTA
1 TTTTATATTATTA
34372364 TTTTATATTATTA
1 TTTTATATTATTA
34372377 T
1 T
34372378 GTCATTTATT
Statistics
Matches: 83, Mismatches: 8, Indels: 31
0.68 0.07 0.25
Matches are distributed among these distances:
11 11 0.13
12 13 0.16
13 32 0.39
14 12 0.14
15 7 0.08
16 7 0.08
17 1 0.01
ACGTcount: A:0.34, C:0.02, G:0.02, T:0.63
Consensus pattern (13 bp):
TTTTATATTATTA
Found at i:34372387 original size:80 final size:82
Alignment explanation
Indices: 34372243--34372417 Score: 213
Period size: 80 Copynumber: 2.2 Consensus size: 82
34372233 TTTATTTGTT
* *
34372243 TTATTTTTA-ATCT-TATTTTTATATTATATTATATAATTATTTGATTATTTATTATTCATATTA
1 TTATTTTTATATATATATTTTCATATTATATTATATAATTATTTGATTATTTATTATTCATATTA
34372306 TTTATATA-TATTATATA
66 TTT-TATACTATTATATA
* * *
34372323 TTATTTTTATATATATATTTTCGTATTATA-TATTATATTTATTTTA-TA-TTATTATGTCAT-T
1 TTATTTTTATATATATATTTTCATATTATATTA-TATAATTATTTGATTATTTATTAT-TCATAT
34372384 TATTTTATACTATTATATA
64 TATTTTATACTATTATATA
*
34372403 TT-TTTTTATCTATAT
1 TTATTTTTATATATAT
34372418 TATTATTATC
Statistics
Matches: 84, Mismatches: 6, Indels: 11
0.83 0.06 0.11
Matches are distributed among these distances:
79 16 0.19
80 33 0.39
81 11 0.13
82 24 0.29
ACGTcount: A:0.31, C:0.03, G:0.02, T:0.63
Consensus pattern (82 bp):
TTATTTTTATATATATATTTTCATATTATATTATATAATTATTTGATTATTTATTATTCATATTA
TTTTATACTATTATATA
Found at i:34372748 original size:12 final size:13
Alignment explanation
Indices: 34372704--34372752 Score: 57
Period size: 14 Copynumber: 3.8 Consensus size: 13
34372694 TATAATTTTT
*
34372704 TTATTATATATTA
1 TTATTAAATATTA
*
34372717 TATATTAAATACTA
1 T-TATTAAATATTA
34372731 TT-TTAAA-ATTA
1 TTATTAAATATTA
34372742 TTATTAAATAT
1 TTATTAAATAT
34372753 CATATTTTTT
Statistics
Matches: 30, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
11 5 0.17
12 10 0.33
13 4 0.13
14 11 0.37
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (13 bp):
TTATTAAATATTA
Found at i:34381491 original size:40 final size:40
Alignment explanation
Indices: 34381431--34382331 Score: 1678
Period size: 40 Copynumber: 22.6 Consensus size: 40
34381421 TATTCGGATG
*
34381431 ATATACGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381471 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381511 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381551 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381591 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381631 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381671 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381711 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381751 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381791 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381831 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381871 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381911 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381951 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34381991 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34382031 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34382071 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34382111 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34382151 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
34382191 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
34382231 ATATCCGGGCTAAGTCCCGAAGCCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** *
34382271 ATATCCGGGCTAAGACCCGAAGGCATTTGTGTGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
*
34382311 ATATCC-GGCTAAATCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
34382332 ATACTTGGGT
Statistics
Matches: 845, Mismatches: 16, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
39 13 0.02
40 832 0.98
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:34389192 original size:48 final size:48
Alignment explanation
Indices: 34389125--34389228 Score: 183
Period size: 48 Copynumber: 2.2 Consensus size: 48
34389115 AAAAATTGGA
34389125 AGTTAGATGAAGTAGAGTCTAACAAATGAGCACATATGTGCATTAGTT
1 AGTTAGATGAAGTAGAGTCTAACAAATGAGCACATATGTGCATTAGTT
*
34389173 AGTTAGGTGAAGTAGAGTCTAACAAATGAGCACATATGTGCATTAGTT
1 AGTTAGATGAAGTAGAGTCTAACAAATGAGCACATATGTGCATTAGTT
*
34389221 -GCTAGATG
1 AGTTAGATG
34389229 GAGAAAAATC
Statistics
Matches: 53, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
47 6 0.11
48 47 0.89
ACGTcount: A:0.36, C:0.11, G:0.25, T:0.29
Consensus pattern (48 bp):
AGTTAGATGAAGTAGAGTCTAACAAATGAGCACATATGTGCATTAGTT
Found at i:34390415 original size:40 final size:40
Alignment explanation
Indices: 34390360--34391260 Score: 1705
Period size: 40 Copynumber: 22.6 Consensus size: 40
34390350 TATTTGGATG
34390360 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390400 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390440 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390480 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390520 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390560 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390600 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390640 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390680 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390720 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390760 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390800 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390840 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390880 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390920 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34390960 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34391000 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34391040 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34391080 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* *
34391120 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* ** * *
34391160 ATATCCGGGCTAAGTCCCGAAGCCATTCATGCTAGTGACT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
* * *
34391200 ATATCCGGGCTAAGACCCGAAGGCATTTGTGCGAGTTGCT
1 ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
34391240 ATATCC-GGCTAAGTCCCGAAG
1 ATATCCGGGCTAAGTCCCGAAG
34391261 ATACTTGGGT
Statistics
Matches: 848, Mismatches: 13, Indels: 1
0.98 0.02 0.00
Matches are distributed among these distances:
39 14 0.02
40 834 0.98
ACGTcount: A:0.25, C:0.23, G:0.25, T:0.27
Consensus pattern (40 bp):
ATATCCGGGCTAAGTCCCGAAGGCATTTGTGCAAGTTACT
Found at i:34397979 original size:205 final size:205
Alignment explanation
Indices: 34397619--34398372 Score: 1131
Period size: 205 Copynumber: 3.7 Consensus size: 205
34397609 GCAGATCTAG
* * * * *
34397619 CTGAAGCAAGATCCAAGATGGTTTGACATTCTTGTGCTTGCAAGGAACAAACCAAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGACATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* *
34397684 GATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTCTATATTGTCAG
66 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
* * *
34397749 AGAGCAAATCGAAGTCTGGCATCTCCACTTCAACAGGGAGTAGATACATAGCAGAACTCACCTTC
131 AGAACAAATCGAAGTCTGGCATCTCCACTTCAAC-GGGAGCAGATACATAGCAGATCTCACCTTC
34397814 AGATGTTTATA
195 AGATGTTTATA
* * *
34397825 CTGAAGC-AGATCCAAGATGATTT-AGTATCCTTGTGCTTACAAGGAGCGAATCGAAGACATAGC
1 CTGAAGCAAGATCCAAGATGATTTGA-CATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
* * *
34397888 TAATTTGGCTTTCACGTGTTTACGTTGAAGCAAATCTAAGATGATTTGGCATCTTTGTATTGTCA
65 TGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
*
34397953 GAGAGCAAATCGAAGTCTGGCATCTCCACTTCAACGAGGAGCAGATACATAGCAGATCTCACCTT
130 GAGAACAAATCGAAGTCTGGCATCTCCACTTCAACG-GGAGCAGATACATAGCAGATCTCACCTT
34398018 CAGATGTTTATA
194 CAGATGTTTATA
* * * *
34398030 CTGAAG-TAGATCCAAGTTGATTT-AGCATCCTTGTGCTTACAAGGAGCAAATCGAAGGCATAGC
1 CTGAAGCAAGATCCAAGATGATTTGA-CATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGC
*
34398093 TGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGCATTGTCA
65 TGATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCA
* *
34398158 GAGAACAAATCAAAGTCTGGCATCTCCACTTCAACGGGGAGCAGATACATAGTAGATCTCACCTT
130 GAGAACAAATCGAAGTCTGGCATCTCCACTTCAAC-GGGAGCAGATACATAGCAGATCTCACCTT
* *
34398223 CAGATAATTT-CA
194 CAGAT-GTTTATA
* * *
34398235 CTAAAGCAAGATCCATGATGATTTGACATTCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
1 CTGAAGCAAGATCCAAGATGATTTGACATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
* * *
34398300 GATTTGGCTTTCATGTGCTTACGATGAAGCAAATCTAAGATGATTTGGCATATCTGTATTGTCAG
66 GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
34398365 AGAACAAA
131 AGAACAAA
34398373 CCAAAGAAGT
Statistics
Matches: 504, Mismatches: 37, Indels: 14
0.91 0.07 0.03
Matches are distributed among these distances:
204 2 0.00
205 371 0.74
206 130 0.26
207 1 0.00
ACGTcount: A:0.31, C:0.19, G:0.21, T:0.29
Consensus pattern (205 bp):
CTGAAGCAAGATCCAAGATGATTTGACATCCTTGTGCTTACAAGGAACAAATCGAAGACATAGCT
GATTTGGCTTTCACGTGTTTACGATGAAGCAAATCTAAGATGATTTGGCATCTCTGTATTGTCAG
AGAACAAATCGAAGTCTGGCATCTCCACTTCAACGGGAGCAGATACATAGCAGATCTCACCTTCA
GATGTTTATA
Found at i:34400070 original size:52 final size:52
Alignment explanation
Indices: 34399995--34400110 Score: 132
Period size: 52 Copynumber: 2.2 Consensus size: 52
34399985 TTTCTGTTGT
* * * *
34399995 TATTATATA-AATATAAATTTTTTATCTGTTTTATTTTTAATCTTATTT-T-TA
1 TATTATATATTATATAAATTTTTTAT-T-ATTTATTATTAATATTATTTATATA
*
34400046 TATTATATATTATAT-AATTATTTTATTATTTATTATTCATATTATTTATATA
1 TATTATATATTATATAAATT-TTTTATTATTTATTATTAATATTATTTATATA
34400098 TATTATATATTAT
1 TATTATATATTAT
34400111 TTTTACATAT
Statistics
Matches: 56, Mismatches: 5, Indels: 7
0.82 0.07 0.10
Matches are distributed among these distances:
50 16 0.29
51 15 0.27
52 25 0.45
ACGTcount: A:0.34, C:0.03, G:0.01, T:0.62
Consensus pattern (52 bp):
TATTATATATTATATAAATTTTTTATTATTTATTATTAATATTATTTATATA
Found at i:34400088 original size:13 final size:11
Alignment explanation
Indices: 34400037--34400208 Score: 72
Period size: 12 Copynumber: 14.9 Consensus size: 11
34400027 ATTTTTAATC
*
34400037 TTATTTTTATA
1 TTATTATTATA
34400048 TTATATATTATA
1 TTAT-TATTATA
* *
34400060 TAATTATTTTA
1 TTATTATTATA
34400071 TTATTTATTAT-
1 TTA-TTATTATA
34400082 TCATATTATTTATA
1 T--TATTA-TTATA
34400096 TATATTA-TATA
1 T-TATTATTATA
*
34400107 TTATTTTTACATA
1 TTATTATT--ATA
*
34400120 TATACTT-TCATA
1 T-TA-TTATTATA
34400132 TTATATATTATA
1 TTAT-TATTATA
34400144 TTTATT-TTATA
1 -TTATTATTATA
*
34400155 TTATTATGT-CA
1 TTATTAT-TATA
34400166 TT-TT-TTATA
1 TTATTATTATA
*
34400175 CTATTA-TATAA
1 TTATTATTAT-A
*
34400186 TTTTTTATCTATA
1 -TTATTAT-TATA
34400199 TTATTATTAT
1 TTATTATTAT
34400209 CAAAAGTTTT
Statistics
Matches: 124, Mismatches: 14, Indels: 46
0.67 0.08 0.25
Matches are distributed among these distances:
8 1 0.01
9 3 0.02
10 17 0.14
11 35 0.28
12 38 0.31
13 21 0.17
14 7 0.06
15 2 0.02
ACGTcount: A:0.33, C:0.04, G:0.01, T:0.62
Consensus pattern (11 bp):
TTATTATTATA
Found at i:34400090 original size:9 final size:9
Alignment explanation
Indices: 34400038--34400112 Score: 65
Period size: 8 Copynumber: 8.9 Consensus size: 9
34400028 TTTTTAATCT
34400038 TATT-TTTA
1 TATTATTTA
34400046 TATTA--TA
1 TATTATTTA
*
34400053 TATTATATA
1 TATTATTTA
34400062 -ATTATTT-
1 TATTATTTA
34400069 TATTA-TT-
1 TATTATTTA
*
34400076 TATTATTCA
1 TATTATTTA
34400085 TATTATTTA
1 TATTATTTA
34400094 TATATATTATA
1 TAT-TATT-TA
34400105 TATTATTT
1 TATTATTT
34400113 TTACATATAT
Statistics
Matches: 56, Mismatches: 3, Indels: 15
0.76 0.04 0.20
Matches are distributed among these distances:
7 14 0.25
8 15 0.27
9 14 0.25
10 8 0.14
11 5 0.09
ACGTcount: A:0.35, C:0.01, G:0.00, T:0.64
Consensus pattern (9 bp):
TATTATTTA
Found at i:34400111 original size:32 final size:34
Alignment explanation
Indices: 34400072--34400159 Score: 87
Period size: 39 Copynumber: 2.6 Consensus size: 34
34400062 ATTATTTTAT
34400072 TATTTATTATTCATATTA-TT--TA-TATATATTA
1 TATTTATT-TTCATATTATTTCATATTATATATTA
34400103 TATATTATTTTTACATATATACTTTCATATTATATATTA
1 TAT-TTA-TTTT-CATAT-TA-TTTCATATTATATATTA
34400142 TATTTATTTT-ATATTATT
1 TATTTATTTTCATATTATT
34400160 ATGTCATTTT
Statistics
Matches: 48, Mismatches: 0, Indels: 16
0.75 0.00 0.25
Matches are distributed among these distances:
31 3 0.06
32 5 0.10
33 9 0.19
34 4 0.08
35 4 0.08
36 2 0.04
37 4 0.08
38 5 0.10
39 12 0.25
ACGTcount: A:0.34, C:0.05, G:0.00, T:0.61
Consensus pattern (34 bp):
TATTTATTTTCATATTATTTCATATTATATATTA
Found at i:34400115 original size:45 final size:43
Alignment explanation
Indices: 34400043--34400161 Score: 127
Period size: 45 Copynumber: 2.7 Consensus size: 43
34400033 AATCTTATTT
* *
34400043 TTATAT-TATATATTATATAATTATTTTATTATTTATTATTCATA
1 TTATATATATATATTATAT-ATTATTTTATTATATACT-TTCATA
* *
34400087 TTATTTATATATATTATATATTATTTTTACATATATACTTTCATA
1 TTATATATATATATTATATATTA-TTTTA-TTATATACTTTCATA
* *
34400132 TTATATAT-TATATT-TATTTTATATTATTAT
1 TTATATATATATATTATATATTATTTTATTAT
34400162 GTCATTTTTT
Statistics
Matches: 64, Mismatches: 8, Indels: 9
0.79 0.10 0.11
Matches are distributed among these distances:
41 3 0.05
42 4 0.06
43 6 0.09
44 15 0.23
45 30 0.47
46 6 0.09
ACGTcount: A:0.35, C:0.03, G:0.00, T:0.61
Consensus pattern (43 bp):
TTATATATATATATTATATATTATTTTATTATATACTTTCATA
Found at i:34400188 original size:20 final size:20
Alignment explanation
Indices: 34400043--34400193 Score: 102
Period size: 20 Copynumber: 7.5 Consensus size: 20
34400033 AATCTTATTT
*
34400043 TTATATTATATATTATATAA
1 TTATTTTATATATTATATAA
34400063 TTATTTTAT-TATTTATTATTCATA
1 TTATTTTATATA-TTA-TA-T-A-A
34400087 TTATTTATATATATTATAT-A
1 TTATTT-TATATATTATATAA
* *
34400107 TTATTTT-TACA-TATATACT
1 TTATTTTATATATTATATA-A
*
34400126 TTCATATTATATATTATAT--
1 TT-ATTTTATATATTATATAA
* *
34400145 TTATTTTATATTATTATGTCA
1 TTATTTTATA-TATTATATAA
34400166 TT-TTTTATACTATTATATAA
1 TTATTTTATA-TATTATATAA
34400186 TT-TTTTAT
1 TTATTTTAT
34400194 CTATATTATT
Statistics
Matches: 106, Mismatches: 10, Indels: 30
0.73 0.07 0.21
Matches are distributed among these distances:
17 5 0.05
18 10 0.09
19 14 0.13
20 45 0.42
21 7 0.07
22 6 0.06
23 2 0.02
24 9 0.08
25 6 0.06
26 2 0.02
ACGTcount: A:0.34, C:0.04, G:0.01, T:0.62
Consensus pattern (20 bp):
TTATTTTATATATTATATAA
Found at i:34400518 original size:7 final size:7
Alignment explanation
Indices: 34400506--34400532 Score: 54
Period size: 7 Copynumber: 3.9 Consensus size: 7
34400496 ATTTTTTTGT
34400506 TATTATA
1 TATTATA
34400513 TATTATA
1 TATTATA
34400520 TATTATA
1 TATTATA
34400527 TATTAT
1 TATTAT
34400533 TTTAAAATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 20 1.00
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (7 bp):
TATTATA
Found at i:34400536 original size:44 final size:39
Alignment explanation
Indices: 34400460--34400541 Score: 92
Period size: 43 Copynumber: 2.0 Consensus size: 39
34400450 AACCAATAAA
* *
34400460 TTTTTTATTTTATATATAATTATTAGTCTTTTATAAATTT
1 TTTTTTATTATATATATAATTATTAGTATTTTA-AAATTT
*
34400500 TTTTGTTATTATATATTATATATTATATATTATTTTAAAATT
1 TTTT-TTATTATATA-TATA-ATTAT-TAGTATTTTAAAATT
34400542 ATTATTAAAT
Statistics
Matches: 35, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
40 4 0.11
41 9 0.26
42 4 0.11
43 10 0.29
44 8 0.23
ACGTcount: A:0.33, C:0.01, G:0.02, T:0.63
Consensus pattern (39 bp):
TTTTTTATTATATATATAATTATTAGTATTTTAAAATTT
Found at i:34403026 original size:33 final size:33
Alignment explanation
Indices: 34402984--34403049 Score: 98
Period size: 33 Copynumber: 2.0 Consensus size: 33
34402974 ACCTTTATGC
* *
34402984 CTTAAATTGAAAATGATTTTTA-TATAGGGGGAG
1 CTTAAATTGAAAATGACTTTGACTA-AGGGGGAG
34403017 CTTAAATTGAAAATGACTTTGACTAAGGGGGAG
1 CTTAAATTGAAAATGACTTTGACTAAGGGGGAG
34403050 TAATCTATTC
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.93
34 2 0.07
ACGTcount: A:0.36, C:0.06, G:0.26, T:0.32
Consensus pattern (33 bp):
CTTAAATTGAAAATGACTTTGACTAAGGGGGAG
Found at i:34406975 original size:40 final size:40
Alignment explanation
Indices: 34406931--34407081 Score: 234
Period size: 40 Copynumber: 3.8 Consensus size: 40
34406921 TGATATAGCT
*
34406931 ACTCGCTCAAATGCCTTCGGGACTTAGCCCGATTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
*
34406971 ACTCGCACAAATGCCTTCGGGACTTAGCCCGGTTATAGTA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
* *
34407011 ACTAGCACAAATGCCTTCGGGACTTAGCCCGGA-TATAATA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCC-GATTATAGTA
*
34407051 ACTCGCACAATTGCCTTCGGG-CTTAGCCCGA
1 ACTCGCACAAATGCCTTCGGGACTTAGCCCGA
34407082 AATTAGTCAC
Statistics
Matches: 103, Mismatches: 7, Indels: 4
0.90 0.06 0.04
Matches are distributed among these distances:
38 2 0.02
39 8 0.08
40 92 0.89
41 1 0.01
ACGTcount: A:0.26, C:0.28, G:0.21, T:0.25
Consensus pattern (40 bp):
ACTCGCACAAATGCCTTCGGGACTTAGCCCGATTATAGTA
Found at i:34411098 original size:188 final size:188
Alignment explanation
Indices: 34410781--34411156 Score: 743
Period size: 188 Copynumber: 2.0 Consensus size: 188
34410771 TTAGGGGCGA
*
34410781 GTTACATGATTTCTTGATTACATATGAGGCACTTATGTGCAAATTATCCGTGTATCCGAGTTGTA
1 GTTACATGATTTCTTAATTACATATGAGGCACTTATGTGCAAATTATCCGTGTATCCGAGTTGTA
34410846 TTCCGATGTGTTCAACGGGTGAAATTTCTGGTGAAATGAAAGAACACTTAAGATGCAAGCGACGT
66 TTCCGATGTGTTCAACGGGTGAAATTTCTGGTGAAATGAAAGAACACTTAAGATGCAAGCGACGT
34410911 ATTGGTAAGTGTTGTGAAATAGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTG
131 ATTGGTAAGTGTTGTGAAATAGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTG
34410969 GTTACATGATTTCTTAATTACATATGAGGCACTTATGTGCAAATTATCCGTGTATCCGAGTTGTA
1 GTTACATGATTTCTTAATTACATATGAGGCACTTATGTGCAAATTATCCGTGTATCCGAGTTGTA
34411034 TTCCGATGTGTTCAACGGGTGAAATTTCTGGTGAAATGAAAGAACACTTAAGATGCAAGCGACGT
66 TTCCGATGTGTTCAACGGGTGAAATTTCTGGTGAAATGAAAGAACACTTAAGATGCAAGCGACGT
34411099 ATTGGTAAGTGTTGTGAAATAGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTG
131 ATTGGTAAGTGTTGTGAAATAGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTG
34411157 ATAATAGATA
Statistics
Matches: 187, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
188 187 1.00
ACGTcount: A:0.28, C:0.15, G:0.24, T:0.33
Consensus pattern (188 bp):
GTTACATGATTTCTTAATTACATATGAGGCACTTATGTGCAAATTATCCGTGTATCCGAGTTGTA
TTCCGATGTGTTCAACGGGTGAAATTTCTGGTGAAATGAAAGAACACTTAAGATGCAAGCGACGT
ATTGGTAAGTGTTGTGAAATAGACACTTTGGACAGGTATGTTCTTAACCCTCGGGTTG
Found at i:34417961 original size:46 final size:46
Alignment explanation
Indices: 34417911--34418772 Score: 1688
Period size: 46 Copynumber: 18.7 Consensus size: 46
34417901 TGGTTGAGCA
34417911 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34417957 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418003 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418049 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418095 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418141 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418187 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418233 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418279 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418325 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418371 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418417 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418463 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418509 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418555 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418601 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
34418647 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
*
34418693 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACG
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
* * *
34418739 CCCGAGCTTGTTGAGTTGAGTCCGAGTTCACTTA
1 TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTA
34418773 GGGGCGAGTT
Statistics
Matches: 812, Mismatches: 4, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
46 812 1.00
ACGTcount: A:0.22, C:0.20, G:0.28, T:0.30
Consensus pattern (46 bp):
TCCGAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATG
Found at i:34422715 original size:49 final size:49
Alignment explanation
Indices: 34422588--34422717 Score: 156
Period size: 48 Copynumber: 2.7 Consensus size: 49
34422578 ACGTCAAAGT
* * *
34422588 CGATGCCATGTCCCAGACAGGTCTTACACTGACTTTCATATGTCGAGGC
1 CGATGCCATGTCCCAGAAAGGTCTTACACTGACTCTCATATATCGAGGC
* * * * *
34422637 TGATGTCGTGTCCCA-AAAGGTCTTACACTGGCTCTCATCTATCG-GTGC
1 CGATGCCATGTCCCAGAAAGGTCTTACACTGACTCTCATATATCGAG-GC
*
34422685 CGATGCCATGTCCCAGAGAGGTCTTACACTGAC
1 CGATGCCATGTCCCAGAAAGGTCTTACACTGAC
34422718 ACACAACAAG
Statistics
Matches: 66, Mismatches: 13, Indels: 4
0.80 0.16 0.05
Matches are distributed among these distances:
47 1 0.02
48 38 0.58
49 27 0.41
ACGTcount: A:0.22, C:0.28, G:0.23, T:0.27
Consensus pattern (49 bp):
CGATGCCATGTCCCAGAAAGGTCTTACACTGACTCTCATATATCGAGGC
Found at i:34422801 original size:48 final size:48
Alignment explanation
Indices: 34422735--34422902 Score: 207
Period size: 48 Copynumber: 3.6 Consensus size: 48
34422725 AAGCTGACGC
* * *
34422735 CATGTCCCAAACAGGTCTTAGACTAGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
* * * * * *
34422783 CATGTCCTAGACATGTCTTACACTAGC-TCT-CATCTTGATGCCGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
* *
34422829 TATGTCCCAGACATGTCTTACACTGGCTTGTATATCTCGAGGCTGATG
1 CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
*
34422877 CATGTCCCA-ACATGTCTTTCACTAGC
1 CATGTCCCAGACATGTCTTACACTAGC
34422903 ACACATATCA
Statistics
Matches: 98, Mismatches: 20, Indels: 5
0.80 0.16 0.04
Matches are distributed among these distances:
46 36 0.37
47 19 0.19
48 43 0.44
ACGTcount: A:0.23, C:0.26, G:0.20, T:0.32
Consensus pattern (48 bp):
CATGTCCCAGACATGTCTTACACTAGCTTGTATATCTCGAGGCTGATG
Found at i:34422801 original size:141 final size:138
Alignment explanation
Indices: 34422592--34422853 Score: 341
Period size: 141 Copynumber: 1.9 Consensus size: 138
34422582 CAAAGTCGAT
* * *
34422592 GCCATGTCCCAGACAGGTCTTACACTGACTTTCATATGTCGAGGCTGATGTCGTGTCCCAAAAGG
1 GCCATGTCCCAAACAGGTCTTACACTGACTTTCATATCTCGAGGCTGATGTCATGTCCCAAAAGG
* * *
34422657 TCTTACACTGGCTCTCATCTATCGGTGCCGATGCCATGTCCCAGAGAGGTCTTACACTGACACAC
66 TCTTACACTAGCTCTCATCT-T-GATGCCGATG-CATGTCCCAGACAGGTCTTACACTGACACAC
34422722 AACAAGCTGAC
128 AACAAGCTGAC
* * *
34422733 GCCATGTCCCAAACAGGTCTTAGACT-AGCTTGT-ATATCTCGAGGCTGATG-CATGTCCTAGAC
1 GCCATGTCCCAAACAGGTCTTACACTGA-CTT-TCATATCTCGAGGCTGATGTCATGTCCCA-AA
* * *
34422795 ATGTCTTACACTAGCTCTCATCTTGATGCCGATGTATGTCCCAGACATGTCTTACACTG
63 AGGTCTTACACTAGCTCTCATCTTGATGCCGATGCATGTCCCAGACAGGTCTTACACTG
34422854 GCTTGTATAT
Statistics
Matches: 106, Mismatches: 12, Indels: 9
0.83 0.09 0.07
Matches are distributed among these distances:
138 22 0.21
139 9 0.08
140 9 0.08
141 65 0.61
142 1 0.01
ACGTcount: A:0.24, C:0.28, G:0.21, T:0.27
Consensus pattern (138 bp):
GCCATGTCCCAAACAGGTCTTACACTGACTTTCATATCTCGAGGCTGATGTCATGTCCCAAAAGG
TCTTACACTAGCTCTCATCTTGATGCCGATGCATGTCCCAGACAGGTCTTACACTGACACACAAC
AAGCTGAC
Found at i:34424672 original size:23 final size:23
Alignment explanation
Indices: 34424646--34424689 Score: 88
Period size: 23 Copynumber: 1.9 Consensus size: 23
34424636 TACAAAATGT
34424646 GCCACAAAGGCTATATAGAATAC
1 GCCACAAAGGCTATATAGAATAC
34424669 GCCACAAAGGCTATATAGAAT
1 GCCACAAAGGCTATATAGAAT
34424690 GCACCAAAAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.43, C:0.20, G:0.18, T:0.18
Consensus pattern (23 bp):
GCCACAAAGGCTATATAGAATAC
Found at i:34424700 original size:23 final size:23
Alignment explanation
Indices: 34424651--34424714 Score: 74
Period size: 23 Copynumber: 2.8 Consensus size: 23
34424641 AATGTGCCAC
* * *
34424651 AAAGGCTATATAGAATACGCCAC
1 AAAGGCTATATAGAATGCACCAA
34424674 AAAGGCTATATAGAATGCACCAA
1 AAAGGCTATATAGAATGCACCAA
* * *
34424697 AAAGACAATACAGAATGC
1 AAAGGCTATATAGAATGC
34424715 CACAAAGTCA
Statistics
Matches: 35, Mismatches: 6, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.48, C:0.19, G:0.17, T:0.16
Consensus pattern (23 bp):
AAAGGCTATATAGAATGCACCAA
Found at i:34426471 original size:22 final size:22
Alignment explanation
Indices: 34426446--34426489 Score: 70
Period size: 22 Copynumber: 2.0 Consensus size: 22
34426436 TGTATGAAAA
*
34426446 AGCAGGCCTTGAGTAGGTGTTT
1 AGCAGGCCTTGAGCAGGTGTTT
*
34426468 AGCAGGCCTTGAGCCGGTGTTT
1 AGCAGGCCTTGAGCAGGTGTTT
34426490 TTTTAGCAGG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.16, C:0.18, G:0.36, T:0.30
Consensus pattern (22 bp):
AGCAGGCCTTGAGCAGGTGTTT
Found at i:34432694 original size:16 final size:16
Alignment explanation
Indices: 34432673--34432719 Score: 78
Period size: 16 Copynumber: 3.0 Consensus size: 16
34432663 ACTCACAAAG
34432673 TCCATAGTTACTCTTT
1 TCCATAGTTACTCTTT
34432689 TCCATAGTTACTC-TT
1 TCCATAGTTACTCTTT
*
34432704 TCCATATTTACTCTTT
1 TCCATAGTTACTCTTT
34432720 CTCACTTCCA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
15 14 0.48
16 15 0.52
ACGTcount: A:0.19, C:0.26, G:0.04, T:0.51
Consensus pattern (16 bp):
TCCATAGTTACTCTTT
Found at i:34432707 original size:15 final size:15
Alignment explanation
Indices: 34432673--34432720 Score: 78
Period size: 15 Copynumber: 3.1 Consensus size: 15
34432663 ACTCACAAAG
34432673 TCCATAGTTACTCTTT
1 TCCATAGTTACTC-TT
34432689 TCCATAGTTACTCTT
1 TCCATAGTTACTCTT
*
34432704 TCCATATTTACTCTT
1 TCCATAGTTACTCTT
34432719 TC
1 TC
34432721 TCACTTCCAT
Statistics
Matches: 31, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
15 18 0.58
16 13 0.42
ACGTcount: A:0.19, C:0.27, G:0.04, T:0.50
Consensus pattern (15 bp):
TCCATAGTTACTCTT
Found at i:34447914 original size:47 final size:49
Alignment explanation
Indices: 34447797--34447975 Score: 207
Period size: 46 Copynumber: 3.8 Consensus size: 49
34447787 GTAACCCGCC
* * * *
34447797 CATAAGAGAACTCGGACTCAACTCAATGAGCTTGG--G-CGTTCACATC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGTTCACATT
34447843 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCTAGTT-ACA-T
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC--GTTCACATT
* * *
34447892 C-TCA-TGAACTCGGACTCAACTCAACGAGTTCGGA---CGTTCGCATT
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGTTCACATT
34447936 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
1 CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCC
34447976 CAAATATCCT
Statistics
Matches: 112, Mismatches: 9, Indels: 21
0.79 0.06 0.15
Matches are distributed among these distances:
42 3 0.03
43 2 0.02
44 3 0.03
45 2 0.02
46 61 0.54
47 29 0.26
48 3 0.03
49 3 0.03
50 3 0.03
51 3 0.03
ACGTcount: A:0.29, C:0.28, G:0.21, T:0.22
Consensus pattern (49 bp):
CATAAGTGAACTCGGACTCAACTCAACGAGCTCGGATGCCGTTCACATT
Found at i:34447930 original size:93 final size:93
Alignment explanation
Indices: 34447804--34447975 Score: 292
Period size: 93 Copynumber: 1.8 Consensus size: 93
34447794 GCCCATAAGA
* *
34447804 GAACTCGGACTCAACTCAATGAGCTTGGGCGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
1 GAACTCGGACTCAACTCAACGAGCTTGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
34447869 CGAGCTCGGATGCCTAGTTACATCTCAT
66 CGAGCTCGGATGCCTAGTTACATCTCAT
* *
34447897 GAACTCGGACTCAACTCAACGAG-TTCGGACGTTCGCATTCATAAGTGAACTCGGACTCAACTCA
1 GAACTCGGACTCAACTCAACGAGCTT-GGACGTTCACATCCATAAGTGAACTCGGACTCAACTCA
34447961 ACGAGCTCGGATGCC
65 ACGAGCTCGGATGCC
34447976 CAAATATCCT
Statistics
Matches: 74, Mismatches: 4, Indels: 2
0.93 0.05 0.03
Matches are distributed among these distances:
92 2 0.03
93 72 0.97
ACGTcount: A:0.28, C:0.28, G:0.22, T:0.22
Consensus pattern (93 bp):
GAACTCGGACTCAACTCAACGAGCTTGGACGTTCACATCCATAAGTGAACTCGGACTCAACTCAA
CGAGCTCGGATGCCTAGTTACATCTCAT
Found at i:34458937 original size:34 final size:34
Alignment explanation
Indices: 34458899--34458981 Score: 94
Period size: 34 Copynumber: 2.4 Consensus size: 34
34458889 CTGATATGTT
* *
34458899 AACGGGCTTAGGCCCAGACTACTACTGTTACTGA
1 AACGGGCTAAGGCCCAGACTACTACTATTACTGA
* * * * *
34458933 AACGGGCTCAGGCCTAGATTGCTACTATTATTGA
1 AACGGGCTAAGGCCCAGACTACTACTATTACTGA
*
34458967 AATGGGCTAAGGCCC
1 AACGGGCTAAGGCCC
34458982 TAACTGTTAC
Statistics
Matches: 40, Mismatches: 9, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
34 40 1.00
ACGTcount: A:0.27, C:0.24, G:0.25, T:0.24
Consensus pattern (34 bp):
AACGGGCTAAGGCCCAGACTACTACTATTACTGA
Found at i:34461054 original size:6 final size:6
Alignment explanation
Indices: 34461043--34461070 Score: 56
Period size: 6 Copynumber: 4.7 Consensus size: 6
34461033 ACAAAATTCG
34461043 GACCTC GACCTC GACCTC GACCTC GACC
1 GACCTC GACCTC GACCTC GACCTC GACC
34461071 GGGGGAAGAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 22 1.00
ACGTcount: A:0.18, C:0.50, G:0.18, T:0.14
Consensus pattern (6 bp):
GACCTC
Found at i:34469153 original size:40 final size:40
Alignment explanation
Indices: 34469070--34469255 Score: 243
Period size: 40 Copynumber: 4.7 Consensus size: 40
34469060 TTGAATGATG
* * * *
34469070 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAA
*
34469110 TCCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34469150 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
*
34469190 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AA
* *
34469231 -CCGGGCTATGTCCTGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
34469256 AACGAGGAGC
Statistics
Matches: 132, Mismatches: 10, Indels: 8
0.88 0.07 0.05
Matches are distributed among these distances:
39 1 0.01
40 121 0.92
41 10 0.08
ACGTcount: A:0.24, C:0.22, G:0.27, T:0.27
Consensus pattern (40 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAA
Found at i:34469273 original size:80 final size:79
Alignment explanation
Indices: 34469070--34469288 Score: 221
Period size: 80 Copynumber: 2.7 Consensus size: 79
34469060 TTGAATGATG
** * * * *
34469070 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGAT-CCGAAGGCAT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAAC-GAGTGACTAAATCCGG-TTAA-ATCCCGAAGGCAT
34469133 TTGTGCGAGTTACTAAA
63 TTGTGCGAGTTACTAAA
* ** * *
34469150 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCGGGTTAAGTCCCGAAGGCATTT
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCC-GGTTAAATCCCGAAGGCATTT
34469215 GTGCGAGTTACTATAA
65 GTGCGAGTTACTA-AA
* * * *
34469231 -CCGGGCTATGTCCTGAAGGCATTTGAACGAG-GAGCTATATCCGGTTAAATTCCGAAGG
1 TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGA-CTAAATCCGGTTAAATCCCGAAGG
34469289 TACGTGATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 11
0.81 0.11 0.08
Matches are distributed among these distances:
79 16 0.14
80 91 0.77
81 11 0.09
ACGTcount: A:0.26, C:0.21, G:0.27, T:0.26
Consensus pattern (79 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGAACGAGTGACTAAATCCGGTTAAATCCCGAAGGCATTTG
TGCGAGTTACTAAA
Found at i:34469753 original size:173 final size:173
Alignment explanation
Indices: 34469464--34469809 Score: 665
Period size: 173 Copynumber: 2.0 Consensus size: 173
34469454 CTTTTCTGTA
34469464 TGTACATAAGGGTTGGTAATGTGAAGCAAGTATGATATCGAAAATTTGTGCATATGAAATTATCC
1 TGTACATAAGGGTTGGTAATGTGAAGCAAGTATGATATCGAAAATTTGTGCATATGAAATTATCC
*
34469529 TTTTAGCTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCAT
66 GTTTAGCTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCAT
34469594 AAATTGCTTACTCCGTTTCATTGCTCCTCTGTTTTATAGATTT
131 AAATTGCTTACTCCGTTTCATTGCTCCTCTGTTTTATAGATTT
34469637 TGTACATAAGGGTTGGTAATGTGAAGCAAGTATGATATCGAAAATTTGTGCATATGAAATTATCC
1 TGTACATAAGGGTTGGTAATGTGAAGCAAGTATGATATCGAAAATTTGTGCATATGAAATTATCC
*
34469702 GTTTAGCTATATGAATGCTATACTTTTGTTGTGCTGGCATTCCTTGCTCAAAACTTACTAAGCAT
66 GTTTAGCTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCAT
*
34469767 AAATTGCTTACTCCGTTTCATTGCTTCTCTGTTTTATAGATTT
131 AAATTGCTTACTCCGTTTCATTGCTCCTCTGTTTTATAGATTT
34469810 GGTTCTCCAG
Statistics
Matches: 170, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
173 170 1.00
ACGTcount: A:0.27, C:0.15, G:0.18, T:0.40
Consensus pattern (173 bp):
TGTACATAAGGGTTGGTAATGTGAAGCAAGTATGATATCGAAAATTTGTGCATATGAAATTATCC
GTTTAGCTATATGAATGCTATACTTTTGTTGTGCTGGAATTCCTTGCTCAAAACTTACTAAGCAT
AAATTGCTTACTCCGTTTCATTGCTCCTCTGTTTTATAGATTT
Found at i:34477323 original size:40 final size:40
Alignment explanation
Indices: 34477237--34477457 Score: 261
Period size: 40 Copynumber: 5.5 Consensus size: 40
34477227 ATGATGTCCA
* * * *
34477237 GGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTAAATCCG
* * * * *
34477277 GACTAAGAT-CCAAAGGCATTTGTGCGAGATACTAATTTCG
1 GGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
34477317 GGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
34477356 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
*
34477396 GGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA-CCG
1 GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTA-AATCCG
* *
34477436 GGCTATGTCCAGAAGGCATTTG
1 GGCTAAGTCCCGAAGGCATTTG
34477458 AACGAGGAGC
Statistics
Matches: 156, Mismatches: 20, Indels: 10
0.84 0.11 0.05
Matches are distributed among these distances:
39 32 0.21
40 114 0.73
41 10 0.06
ACGTcount: A:0.26, C:0.21, G:0.28, T:0.26
Consensus pattern (40 bp):
GGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTAAATCCG
Found at i:34482232 original size:27 final size:27
Alignment explanation
Indices: 34482107--34482242 Score: 146
Period size: 27 Copynumber: 5.0 Consensus size: 27
34482097 GTAAACACGC
* **
34482107 CATGAAAGAAATGTCTTTGTGGCGAAT
1 CATGAAAGAAATGCCTTTGTGGAAAAT
34482134 CATGAAAGAAATGCCTTTTGTGGAAAAT
1 CATGAAAGAAATGCC-TTTGTGGAAAAT
* * * * **
34482162 CACGAAAGAAGTGCTTTTATGGCGAAT
1 CATGAAAGAAATGCCTTTGTGGAAAAT
*
34482189 CATGAAAGAAATTCCTTTGTGGAAAAT
1 CATGAAAGAAATGCCTTTGTGGAAAAT
* * *
34482216 CATGAAAGAAAAGCCTTGGTGGTAAAT
1 CATGAAAGAAATGCCTTTGTGGAAAAT
34482243 TTTGAAGGGA
Statistics
Matches: 88, Mismatches: 20, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
27 66 0.75
28 22 0.25
ACGTcount: A:0.38, C:0.12, G:0.24, T:0.27
Consensus pattern (27 bp):
CATGAAAGAAATGCCTTTGTGGAAAAT
Found at i:34484240 original size:42 final size:43
Alignment explanation
Indices: 34484113--34484242 Score: 154
Period size: 44 Copynumber: 3.0 Consensus size: 43
34484103 ACATAGGATT
* *
34484113 TCGATATGTGTTTTCATGCAAGACCACGTCTGGGACGTTGGCA
1 TCGATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
* * * * * *
34484156 TCGATCTGTGATTTACGTGTAAGACGATGTCTAGGACATTGGCA
1 TCGATATGTGATTT-CATGTAAGACCACGTCTGGGACGTTGGCA
* *
34484200 TC-ATATTTGATTTCATGTAAGACCACATCTGGGACGTTGGCA
1 TCGATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
34484242 T
1 T
34484243 TGTACGAGCT
Statistics
Matches: 70, Mismatches: 16, Indels: 3
0.79 0.18 0.03
Matches are distributed among these distances:
42 24 0.34
43 21 0.30
44 25 0.36
ACGTcount: A:0.24, C:0.18, G:0.25, T:0.32
Consensus pattern (43 bp):
TCGATATGTGATTTCATGTAAGACCACGTCTGGGACGTTGGCA
Found at i:34488816 original size:124 final size:124
Alignment explanation
Indices: 34488596--34488843 Score: 487
Period size: 124 Copynumber: 2.0 Consensus size: 124
34488586 ATAAGGTGAC
34488596 TATAAAGAATAAATATCCTTTGCCACGAATTGATGACTTGTTCGATTAGTTGAAAGGGGCCATAG
1 TATAAAGAATAAATATCCTTTGCCACGAATTGATGACTTGTTCGATTAGTTGAAAGGGGCCATAG
*
34488661 TGTTTTCAAAGATAGATTTTAGATCAGGTTACTATCAGCTGCAAGTCAAAGCCTCTGAT
66 TGTTTTCAAAGATAGATTTTAGATCAGGTTACTATCAGCTGCAAGTCAAAGACTCTGAT
34488720 TATAAAGAATAAATATCCTTTGCCACGAATTGATGACTTGTTCGATTAGTTGAAAGGGGCCATAG
1 TATAAAGAATAAATATCCTTTGCCACGAATTGATGACTTGTTCGATTAGTTGAAAGGGGCCATAG
34488785 TGTTTTCAAAGATAGATTTTAGATCAGGTTACTATCAGCTGCAAGTCAAAGACTCTGAT
66 TGTTTTCAAAGATAGATTTTAGATCAGGTTACTATCAGCTGCAAGTCAAAGACTCTGAT
34488844 ATGCCAAAAA
Statistics
Matches: 123, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
124 123 1.00
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32
Consensus pattern (124 bp):
TATAAAGAATAAATATCCTTTGCCACGAATTGATGACTTGTTCGATTAGTTGAAAGGGGCCATAG
TGTTTTCAAAGATAGATTTTAGATCAGGTTACTATCAGCTGCAAGTCAAAGACTCTGAT
Found at i:34492638 original size:42 final size:43
Alignment explanation
Indices: 34492535--34492643 Score: 134
Period size: 44 Copynumber: 2.5 Consensus size: 43
34492525 TATGTGTTTT
34492535 CATGTAAGACCACGTCTGGGACGATAGCATCGACCTATGATTTA
1 CATGTAAGACCACGTCTGGGACGATAGCATCGA-CTATGATTTA
* * * *
34492579 CGTGTAAGACCATGTCTGGGAC-ATCGACATCGTA-TTTGATTTA
1 CATGTAAGACCACGTCTGGGACGATAG-CATCG-ACTATGATTTA
34492622 -ATGTAAGACCACGTCTGGGACG
1 CATGTAAGACCACGTCTGGGACG
34492644 TTGGCATTGC
Statistics
Matches: 56, Mismatches: 6, Indels: 7
0.81 0.09 0.10
Matches are distributed among these distances:
42 19 0.34
43 11 0.20
44 25 0.45
45 1 0.02
ACGTcount: A:0.28, C:0.21, G:0.25, T:0.27
Consensus pattern (43 bp):
CATGTAAGACCACGTCTGGGACGATAGCATCGACTATGATTTA
Found at i:34494959 original size:27 final size:27
Alignment explanation
Indices: 34494929--34495106 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
34494919 ATATTGAGCC
* *
34494929 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
34494956 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
34494983 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
34495011 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
34495038 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
34495065 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
34495092 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34495107 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:34495041 original size:55 final size:54
Alignment explanation
Indices: 34494929--34495106 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
34494919 ATATTGAGCC
* * * * *
34494929 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
34494983 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
34495038 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
34495092 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34495107 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:34503234 original size:27 final size:27
Alignment explanation
Indices: 34503204--34503381 Score: 137
Period size: 27 Copynumber: 6.6 Consensus size: 27
34503194 ATATTGAGTC
* *
34503204 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * * *
34503231 CGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
* *
34503258 CGCACACTTAGTGCTACATAGTCAAACC
1 CGCACACTTAGTGCTACATAATC-AACT
** ** *
34503286 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
* **
34503313 CGCACACTTAGTGC-ATCATATTCATTT
1 CGCACACTTAGTGCTA-CATAATCAACT
* *
34503340 CGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTACATAA-TCA-ACT
34503367 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34503382 GTACAATTTA
Statistics
Matches: 121, Mismatches: 25, Indels: 10
0.78 0.16 0.06
Matches are distributed among these distances:
26 2 0.02
27 96 0.79
28 23 0.19
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:34503316 original size:55 final size:54
Alignment explanation
Indices: 34503204--34503381 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 54
34503194 ATATTGAGTC
* * * * *
34503204 CGCACACTCAGTGCTATATAATCAACTCGCACATTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
* * ** *
34503258 CGCACACTTAGTGCTACATAGTCAAACCCGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATC-AACCCGCACACTTAGTGCCACATAATCAAAT
* *** *
34503313 CGCACACTTAGTGC-ATCATATTCATTTCGCACACTTAGTGCAACA-AAGT-AGAAT
1 CGCACACTTAGTGCTA-CATAATCAACCCGCACACTTAGTGCCACATAA-TCA-AAT
34503367 CGCACACTTAGTGCT
1 CGCACACTTAGTGCT
34503382 GTACAATTTA
Statistics
Matches: 100, Mismatches: 19, Indels: 9
0.78 0.15 0.07
Matches are distributed among these distances:
53 1 0.01
54 55 0.55
55 44 0.44
ACGTcount: A:0.30, C:0.28, G:0.16, T:0.26
Consensus pattern (54 bp):
CGCACACTTAGTGCTACATAATCAACCCGCACACTTAGTGCCACATAATCAAAT
Found at i:34511475 original size:27 final size:27
Alignment explanation
Indices: 34511445--34511622 Score: 153
Period size: 27 Copynumber: 6.6 Consensus size: 27
34511435 ATATTGAGCC
* *
34511445 CGCACACTCAGTGCTATATAATCAACT
1 CGCACACTTAGTGCTACATAATCAACT
* * *
34511472 CGCACACTTAGTGCCACGTAATCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
34511499 CGCACACTTAGTGCTACATAGTCAGACT
1 CGCACACTTAGTGCTACATAATCA-ACT
** ** *
34511527 CGCACACTTAGTGCCGCATGGTCAATT
1 CGCACACTTAGTGCTACATAATCAACT
**
34511554 CGCACACTTAGTGC-ATCAT-ATACATTT
1 CGCACACTTAGTGCTA-CATAAT-CAACT
* * * *
34511581 CGCACACTGAGTGCAACATAGTCAAAT
1 CGCACACTTAGTGCTACATAATCAACT
*
34511608 CGCACCCTTAGTGCT
1 CGCACACTTAGTGCT
34511623 GTACAATTTA
Statistics
Matches: 123, Mismatches: 23, Indels: 10
0.79 0.15 0.06
Matches are distributed among these distances:
26 1 0.01
27 97 0.79
28 25 0.20
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.25
Consensus pattern (27 bp):
CGCACACTTAGTGCTACATAATCAACT
Found at i:34517249 original size:6 final size:6
Alignment explanation
Indices: 34517238--34517268 Score: 53
Period size: 6 Copynumber: 5.2 Consensus size: 6
34517228 AATATTTCCC
*
34517238 ACAGAA ACAGAA ACAGAA ACAAAA ACAGAA A
1 ACAGAA ACAGAA ACAGAA ACAGAA ACAGAA A
34517269 ATACAAACCC
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.71, C:0.16, G:0.13, T:0.00
Consensus pattern (6 bp):
ACAGAA
Found at i:34523914 original size:80 final size:79
Alignment explanation
Indices: 34523765--34523987 Score: 232
Period size: 80 Copynumber: 2.8 Consensus size: 79
34523755 TTGAATGCTG
* * * ** * * * * *
34523765 TCCGGGCTAAGTCCCGAAGGCTTTGTGCTAAGCGAATATATCCGGACTAAGAT-CCGAAGGCCTT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGC-GAGTTACTAAAGCCGGGCTAAG-TCCCGAAGGCATT
*
34523829 TGTGCGAGATACTAAA
64 CGTGCGAGATACTAAA
* *
34523845 TCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGGCATTC
1 TCCGGGTTAAGTCCCGAAGGCATT-GTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTC
* **
34523910 GTGCGAGTTGTTAAA
65 GTGCGAGATACTAAA
* * * *
34523925 TCCGGGTTATGTCCCGAAGGCATTGTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGGCATT
1 TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATT
34523988 TGAACGAGGA
Statistics
Matches: 120, Mismatches: 21, Indels: 5
0.82 0.14 0.03
Matches are distributed among these distances:
79 35 0.29
80 81 0.68
81 4 0.03
ACGTcount: A:0.24, C:0.22, G:0.28, T:0.26
Consensus pattern (79 bp):
TCCGGGTTAAGTCCCGAAGGCATTGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGGCATTCG
TGCGAGATACTAAA
Found at i:34523968 original size:39 final size:40
Alignment explanation
Indices: 34523818--34523987 Score: 234
Period size: 40 Copynumber: 4.3 Consensus size: 40
34523808 GGACTAAGAT
* * *
34523818 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* *
34523858 CCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
34523898 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * *
34523938 CCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
34523977 CCGAAGGCATT
1 CCGAAGGCATT
34523988 TGAACGAGGA
Statistics
Matches: 118, Mismatches: 12, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
39 35 0.30
40 83 0.70
ACGTcount: A:0.24, C:0.21, G:0.29, T:0.26
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:34524007 original size:79 final size:80
Alignment explanation
Indices: 34523840--34524022 Score: 226
Period size: 79 Copynumber: 2.3 Consensus size: 80
34523830 GTGCGAGATA
* *
34523840 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
** **
34523905 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * * *
34523920 TTAAATCCGGGTTATGTCCCGAAGGCATT-GTGTGAGTTACTAAATCCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
*
34523984 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
34523999 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
34524023 TACGTGATTT
Statistics
Matches: 87, Mismatches: 16, Indels: 2
0.83 0.15 0.02
Matches are distributed among these distances:
78 14 0.16
79 46 0.53
80 27 0.31
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.26
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTACTAAAGCCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:34525132 original size:54 final size:54
Alignment explanation
Indices: 34525047--34525156 Score: 157
Period size: 54 Copynumber: 2.0 Consensus size: 54
34525037 AAACAAACGG
* * * *
34525047 CATCAGTATTGAAGCTCTGTGCAGAGTGATATCCCAGTCGTAATGGGAAAAGGT
1 CATCAGCATGGAAGCTCTGTACAGAGAGATATCCCAGTCGTAATGGGAAAAGGT
* * *
34525101 CATCAGCATGGAAGTTCTGTACAGGGAGATATCCCGGTCGTAATGGGAAAAGGT
1 CATCAGCATGGAAGCTCTGTACAGAGAGATATCCCAGTCGTAATGGGAAAAGGT
34525155 CA
1 CA
34525157 GTGTAGTCGA
Statistics
Matches: 49, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
54 49 1.00
ACGTcount: A:0.30, C:0.17, G:0.29, T:0.24
Consensus pattern (54 bp):
CATCAGCATGGAAGCTCTGTACAGAGAGATATCCCAGTCGTAATGGGAAAAGGT
Found at i:34528477 original size:83 final size:83
Alignment explanation
Indices: 34528338--34528506 Score: 329
Period size: 83 Copynumber: 2.0 Consensus size: 83
34528328 TGGGAAGAAT
34528338 GTTGTTCTGAAGAAATTTTTCAAAGGTTTTTCCGAGAAATTCTTTTCAAATTTGTGCATTACTCG
1 GTTGTTCTGAAGAAATTTTTCAAAGGTTTTTCCGAGAAATTCTTTTCAAATTTGTGCATTACTCG
34528403 GGACAAGCAATGAATTAA
66 GGACAAGCAATGAATTAA
*
34528421 GTTGTTCTGAAGAAATTTTTCAAAGGTTTTTTCGAGAAATTCTTTTCAAATTTGTGCATTACTCG
1 GTTGTTCTGAAGAAATTTTTCAAAGGTTTTTCCGAGAAATTCTTTTCAAATTTGTGCATTACTCG
34528486 GGACAAGCAATGAATTAA
66 GGACAAGCAATGAATTAA
34528504 GTT
1 GTT
34528507 CGGGGGTGTG
Statistics
Matches: 85, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
83 85 1.00
ACGTcount: A:0.31, C:0.12, G:0.18, T:0.38
Consensus pattern (83 bp):
GTTGTTCTGAAGAAATTTTTCAAAGGTTTTTCCGAGAAATTCTTTTCAAATTTGTGCATTACTCG
GGACAAGCAATGAATTAA
Found at i:34529284 original size:24 final size:25
Alignment explanation
Indices: 34529242--34529289 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 25
34529232 CCTTCTCATA
*
34529242 TCTTCACTTCTCTCTCATTTTTCTC
1 TCTTCACTTCTCTCTCATTGTTCTC
34529267 TCTTCA-TTCTCT-TCCATTGTTCT
1 TCTTCACTTCTCTCT-CATTGTTCT
34529290 TCATTTCCTT
Statistics
Matches: 21, Mismatches: 1, Indels: 3
0.84 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 14 0.67
25 6 0.29
ACGTcount: A:0.08, C:0.33, G:0.02, T:0.56
Consensus pattern (25 bp):
TCTTCACTTCTCTCTCATTGTTCTC
Found at i:34531015 original size:40 final size:40
Alignment explanation
Indices: 34530843--34531008 Score: 264
Period size: 40 Copynumber: 4.2 Consensus size: 40
34530833 AACCTAAGTA
* *
34530843 CCTTCGGGATTTAG-CCGGATATAG-CAACTCGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTC-ACTAGCACAAATG
34530882 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
* *
34530922 CCTTCGGGACTTAGCCCAGATATAGTAACTAGCACAAATG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
*
34530962 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAGTG
1 CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
34531002 CCTTCGG
1 CCTTCGG
34531009 ATCTTAGTCC
Statistics
Matches: 118, Mismatches: 7, Indels: 3
0.92 0.05 0.02
Matches are distributed among these distances:
39 13 0.11
40 104 0.88
41 1 0.01
ACGTcount: A:0.27, C:0.27, G:0.23, T:0.23
Consensus pattern (40 bp):
CCTTCGGGACTTAGCCCGGATATAGTCACTAGCACAAATG
Found at i:34532440 original size:13 final size:13
Alignment explanation
Indices: 34532424--34532451 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
34532414 TTTATTATTT
34532424 TTAACACAAAATA
1 TTAACACAAAATA
34532437 TTAACACAAAATA
1 TTAACACAAAATA
34532450 TT
1 TT
34532452 TATAATATGT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.57, C:0.14, G:0.00, T:0.29
Consensus pattern (13 bp):
TTAACACAAAATA
Found at i:34536111 original size:30 final size:29
Alignment explanation
Indices: 34536040--34536172 Score: 176
Period size: 29 Copynumber: 4.5 Consensus size: 29
34536030 TCGGCTATCG
* *
34536040 ATTATAAAAAGGGATGCTGACGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
* * *
34536069 ACTATGAGAAGGGATGGTGACGACCATTGA
1 ATTATGAAAAGGGATGGTGACGACCA-TCA
*
34536099 ATTATGAAAAGGGATGGTGATGACCATCA
1 ATTATGAAAAGGGATGGTGACGACCATCA
*
34536128 ACTATGAAAAGGGATGGTGACGACCATCGA
1 ATTATGAAAAGGGATGGTGACGACCATC-A
*
34536158 ATTATGAAAAAGGAT
1 ATTATGAAAAGGGAT
34536173 AGCTTTGGCT
Statistics
Matches: 89, Mismatches: 13, Indels: 3
0.85 0.12 0.03
Matches are distributed among these distances:
29 50 0.56
30 39 0.44
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (29 bp):
ATTATGAAAAGGGATGGTGACGACCATCA
Found at i:34536111 original size:59 final size:59
Alignment explanation
Indices: 34536036--34536172 Score: 213
Period size: 59 Copynumber: 2.3 Consensus size: 59
34536026 AGCTTCGGCT
* *
34536036 ATCG-ATTATAAAAAGGGATGCTGACGACCATCAACTATGAGAAGGGATGGTGACGACC
1 ATCGAATTATGAAAAGGGATGCTGACGACCATCAACTATGAAAAGGGATGGTGACGACC
* * *
34536094 ATTGAATTATGAAAAGGGATGGTGATGACCATCAACTATGAAAAGGGATGGTGACGACC
1 ATCGAATTATGAAAAGGGATGCTGACGACCATCAACTATGAAAAGGGATGGTGACGACC
*
34536153 ATCGAATTATGAAAAAGGAT
1 ATCGAATTATGAAAAGGGAT
34536173 AGCTTTGGCT
Statistics
Matches: 71, Mismatches: 7, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
58 3 0.04
59 68 0.96
ACGTcount: A:0.39, C:0.13, G:0.27, T:0.21
Consensus pattern (59 bp):
ATCGAATTATGAAAAGGGATGCTGACGACCATCAACTATGAAAAGGGATGGTGACGACC
Found at i:34536273 original size:59 final size:57
Alignment explanation
Indices: 34536071--34536290 Score: 194
Period size: 59 Copynumber: 3.8 Consensus size: 57
34536061 GACCATCAAC
* * * * * * *
34536071 TATGAGAAGGGATGGTGACGACCATTGAATTATGAAAAGGGAT-GGTGATGACCATCAA
1 TATGAAAAGGAATGGTGACGACCATTGAATTATGAAAAGGAATAGCT--TGGCTATCGA
* *
34536129 CTATGAAAAGGGATGGTGACGACCATCGAATTATGAAAAAGG-ATAGCTTTGGCTATCGGA
1 -TATGAAAAGGAATGGTGACGACCATTGAATTATG-AAAAGGAATAGC-TTGGCTATC-GA
* * *
34536189 TATTGAAAATGAATTGTGATGACCATTGAATTATGAAAAGGAATAGCTTCGGCTATCGA
1 TA-TGAAAAGGAATGGTGACGACCATTGAATTATGAAAAGGAATAGCTT-GGCTATCGA
* * * *
34536248 TTATGAAAAGGAATGGCGACGACCA-TCAACTATGAACAGGAAT
1 -TATGAAAAGGAATGGTGACGACCATTGAATTATGAAAAGGAAT
34536291 GGTGACGGCC
Statistics
Matches: 135, Mismatches: 18, Indels: 17
0.79 0.11 0.10
Matches are distributed among these distances:
58 15 0.11
59 70 0.52
60 49 0.36
61 1 0.01
ACGTcount: A:0.37, C:0.12, G:0.26, T:0.24
Consensus pattern (57 bp):
TATGAAAAGGAATGGTGACGACCATTGAATTATGAAAAGGAATAGCTTGGCTATCGA
Found at i:34536281 original size:29 final size:29
Alignment explanation
Indices: 34536192--34536304 Score: 84
Period size: 29 Copynumber: 3.9 Consensus size: 29
34536182 TATCGGATAT
* * * *
34536192 TGAAAATGAATTGTGATGACCATTGAATTA
1 TGAAAAGGAATGGTGACGACCA-TCAATTA
* * * * *
34536222 TGAAAAGGAATAGCT-TCGGCTATCGATTA
1 TGAAAAGGAAT-GGTGACGACCATCAATTA
* *
34536251 TGAAAAGGAATGGCGACGACCATCAACTA
1 TGAAAAGGAATGGTGACGACCATCAATTA
* *
34536280 TGAACAGGAATGGTGACGGCCATCA
1 TGAAAAGGAATGGTGACGACCATCA
34536305 TGATTCCACT
Statistics
Matches: 62, Mismatches: 19, Indels: 5
0.72 0.22 0.06
Matches are distributed among these distances:
28 1 0.02
29 47 0.76
30 13 0.21
31 1 0.02
ACGTcount: A:0.37, C:0.15, G:0.25, T:0.23
Consensus pattern (29 bp):
TGAAAAGGAATGGTGACGACCATCAATTA
Found at i:34546364 original size:68 final size:68
Alignment explanation
Indices: 34546255--34546391 Score: 265
Period size: 68 Copynumber: 2.0 Consensus size: 68
34546245 TATCGAGATA
34546255 AGTTTGCGATAAATAAATGCAATGTTTTATTATTTATAATTAATGATGTTATTTTTCAGCATCTA
1 AGTTTGCGATAAATAAATGCAATGTTTTATTATTTATAATTAATGATGTTATTTTTCAGCATCTA
34546320 TAT
66 TAT
*
34546323 AGTTTGCGTTAAATAAATGCAATGTTTTATTATTTATAATTAATGATGTTATTTTTCAGCATCTA
1 AGTTTGCGATAAATAAATGCAATGTTTTATTATTTATAATTAATGATGTTATTTTTCAGCATCTA
34546388 TAT
66 TAT
34546391 A
1 A
34546392 TTTATTTTGT
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.34, C:0.07, G:0.12, T:0.47
Consensus pattern (68 bp):
AGTTTGCGATAAATAAATGCAATGTTTTATTATTTATAATTAATGATGTTATTTTTCAGCATCTA
TAT
Found at i:34546704 original size:53 final size:53
Alignment explanation
Indices: 34546510--34546716 Score: 166
Period size: 53 Copynumber: 3.8 Consensus size: 53
34546500 ATTAAGGTTT
* * * * * *
34546510 AAGGATACCAAGTAAGACCATGCCAAGGA-ATGGCATTGGTAAGTTTTACAAGGC
1 AAGGATACCATGTAAGACCATGTCAA-GACATGACAATGGTAAG-TTCATAAGGC
* * * * * * *
34546564 AAGGAAATCATGTAAGACCATGTCAAGACATGGCATTGATAAACTACTATAAGGC
1 AAGGATACCATGTAAGACCATGTCAAGACATGACAATGGT-AAGTTC-ATAAGGC
* * * * * *
34546619 AAAGATCCCATGTAAGACCAT-ACAAAGGCATGACAATGGTGAGTTCATAAGGT
1 AAGGATACCATGTAAGACCATGTC-AAGACATGACAATGGTAAGTTCATAAGGC
* *
34546672 AAGGATACCACGTAAGACCATGTCAAGACATGAAAATGGTAAGTT
1 AAGGATACCATGTAAGACCATGTCAAGACATGACAATGGTAAGTT
34546717 TAAAAAGGAA
Statistics
Matches: 119, Mismatches: 29, Indels: 11
0.75 0.18 0.07
Matches are distributed among these distances:
53 44 0.37
54 38 0.32
55 37 0.31
ACGTcount: A:0.40, C:0.16, G:0.23, T:0.21
Consensus pattern (53 bp):
AAGGATACCATGTAAGACCATGTCAAGACATGACAATGGTAAGTTCATAAGGC
Found at i:34554764 original size:26 final size:26
Alignment explanation
Indices: 34554713--34554766 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 26
34554703 ATTCATACAT
*
34554713 CTCGTAAGGGCATAATAGTCGTTTTAC
1 CTCGTAAGGGCATAACAGTC-TTTTAC
*
34554740 CTCGTAGGGGCATAACAGT-TATTTAC
1 CTCGTAAGGGCATAACAGTCT-TTTAC
34554766 C
1 C
34554767 AATTTTTAGG
Statistics
Matches: 24, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
25 1 0.04
26 6 0.25
27 17 0.71
ACGTcount: A:0.26, C:0.20, G:0.22, T:0.31
Consensus pattern (26 bp):
CTCGTAAGGGCATAACAGTCTTTTAC
Found at i:34558132 original size:39 final size:40
Alignment explanation
Indices: 34558035--34558132 Score: 162
Period size: 40 Copynumber: 2.5 Consensus size: 40
34558025 CGGATGATAA
34558035 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
* *
34558075 CCGGGCTAAGTCTCGAAGGCAATTGTGCTAGTTGCTATAT
1 CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
*
34558115 CC-GGCTAATTCCCGAAGG
1 CCGGGCTAAGTCCCGAAGG
34558133 TACTTGGGTT
Statistics
Matches: 54, Mismatches: 4, Indels: 1
0.92 0.07 0.02
Matches are distributed among these distances:
39 14 0.26
40 40 0.74
ACGTcount: A:0.23, C:0.23, G:0.27, T:0.27
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCAATTGTGCTAGTTACTATAT
Found at i:34563420 original size:13 final size:13
Alignment explanation
Indices: 34563402--34563431 Score: 60
Period size: 13 Copynumber: 2.3 Consensus size: 13
34563392 AATTAATCGT
34563402 ACACGGGCGTGGC
1 ACACGGGCGTGGC
34563415 ACACGGGCGTGGC
1 ACACGGGCGTGGC
34563428 ACAC
1 ACAC
34563432 CAGCGTGTCC
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 17 1.00
ACGTcount: A:0.20, C:0.33, G:0.40, T:0.07
Consensus pattern (13 bp):
ACACGGGCGTGGC
Found at i:34564299 original size:74 final size:74
Alignment explanation
Indices: 34564178--34564325 Score: 269
Period size: 74 Copynumber: 2.0 Consensus size: 74
34564168 TGGATTTTTG
*
34564178 CTTAGGTATTATCTTAATTCAATCGTTTTTCCAAAAGTAATTCCCCAATTCTATTTTCCGTGAAT
1 CTTAGGTATTATCTTAATTCAATCATTTTTCCAAAAGTAATTCCCCAATTCTATTTTCCGTGAAT
34564243 TCTTAGTTT
66 TCTTAGTTT
* *
34564252 CTTAGGTATTGTCTTAATTCAATCATTTTTCCAAAAGTAATTCCCCAATTCTATTTTCTGTGAAT
1 CTTAGGTATTATCTTAATTCAATCATTTTTCCAAAAGTAATTCCCCAATTCTATTTTCCGTGAAT
34564317 TCTTAGTTT
66 TCTTAGTTT
34564326 AGTTATTTAG
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
74 71 1.00
ACGTcount: A:0.26, C:0.18, G:0.09, T:0.47
Consensus pattern (74 bp):
CTTAGGTATTATCTTAATTCAATCATTTTTCCAAAAGTAATTCCCCAATTCTATTTTCCGTGAAT
TCTTAGTTT
Found at i:34580598 original size:25 final size:25
Alignment explanation
Indices: 34580556--34580604 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
34580546 CTTACCAAAA
* *
34580556 TACAAAACCGATGAATAGGAATGAC
1 TACAAAAACGATGAATAGCAATGAC
34580581 TACAAAAACGAT-AGATAGCAATGA
1 TACAAAAACGATGA-ATAGCAATGA
34580605 AGGGAAAGTC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.51, C:0.14, G:0.18, T:0.16
Consensus pattern (25 bp):
TACAAAAACGATGAATAGCAATGAC
Found at i:34582517 original size:26 final size:27
Alignment explanation
Indices: 34582488--34582540 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 27
34582478 ATATCGAAAA
*
34582488 CATATTAGGAAA-GAAAGACTTTGTGG
1 CATAATAGGAAAGGAAAGACTTTGTGG
* * *
34582514 CATAATATGAAAGGAATGCCTTTGTGG
1 CATAATAGGAAAGGAAAGACTTTGTGG
34582541 AAAACTCCGT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
26 10 0.45
27 12 0.55
ACGTcount: A:0.36, C:0.09, G:0.26, T:0.28
Consensus pattern (27 bp):
CATAATAGGAAAGGAAAGACTTTGTGG
Found at i:34582555 original size:27 final size:27
Alignment explanation
Indices: 34582525--34582594 Score: 104
Period size: 27 Copynumber: 2.6 Consensus size: 27
34582515 ATAATATGAA
*
34582525 AGGAATGCCTTTGTGGAAAACTCCGTT
1 AGGAATGCCTTTGTGGAAAACTCCATT
* *
34582552 AGGAATACCTTTATGGAAAACTCCATT
1 AGGAATGCCTTTGTGGAAAACTCCATT
*
34582579 AGGAATGCCTTCGTGG
1 AGGAATGCCTTTGTGG
34582595 TGTACTCTTA
Statistics
Matches: 37, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 37 1.00
ACGTcount: A:0.29, C:0.19, G:0.24, T:0.29
Consensus pattern (27 bp):
AGGAATGCCTTTGTGGAAAACTCCATT
Found at i:34586317 original size:28 final size:27
Alignment explanation
Indices: 34586260--34586411 Score: 241
Period size: 27 Copynumber: 5.6 Consensus size: 27
34586250 TAAATTGTGC
*
34586260 AGCACTAAGTGTGCGAATTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
34586287 AGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
34586315 AGCACTAAGTGTGCGAGTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
34586342 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAG-TTGACTATGT
* *
34586370 AGCACTAAGTGTGCGAGTTGATTATAT
1 AGCACTAAGTGTGCGAGTTGACTATGT
*
34586397 AGCACTGAGTGTGCG
1 AGCACTAAGTGTGCG
34586412 GACTTAATAT
Statistics
Matches: 119, Mismatches: 4, Indels: 4
0.94 0.03 0.03
Matches are distributed among these distances:
27 66 0.55
28 53 0.45
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (27 bp):
AGCACTAAGTGTGCGAGTTGACTATGT
Found at i:34586324 original size:55 final size:55
Alignment explanation
Indices: 34586260--34586411 Score: 259
Period size: 55 Copynumber: 2.8 Consensus size: 55
34586250 TAAATTGTGC
*
34586260 AGCACTAAGTGTGCGAATTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
*
34586315 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
* * *
34586370 AGCACTAAGTGTGCGAGTTGATTATATAGCACTGAGTGTGCG
1 AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCG
34586412 GACTTAATAT
Statistics
Matches: 92, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
55 92 1.00
ACGTcount: A:0.26, C:0.14, G:0.29, T:0.31
Consensus pattern (55 bp):
AGCACTAAGTGTGCGAGTTGACTATGTAGCACTAAGTGTGCGAGTTTGACTATGT
Found at i:34593203 original size:79 final size:81
Alignment explanation
Indices: 34593067--34593249 Score: 232
Period size: 79 Copynumber: 2.3 Consensus size: 81
34593057 TCGAATGATG
* *
34593067 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
34593131 TGTGCGAGTTACTA-A
66 TGTGCGAGTTACTATA
* * * **
34593146 TTCCGGGCTAAG-CCCGAAGGCATTGGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
34593208 TTTGTGCGAGTTACTATA
64 TTTGTGCGAGTTACTATA
* *
34593226 ACCGGGCTATGTCCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATT
34593250 TGAACGAGTA
Statistics
Matches: 90, Mismatches: 9, Indels: 8
0.84 0.08 0.07
Matches are distributed among these distances:
78 1 0.01
79 59 0.66
80 30 0.33
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTGGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCATT
TGTGCGAGTTACTATA
Found at i:34593265 original size:40 final size:40
Alignment explanation
Indices: 34593068--34593251 Score: 216
Period size: 40 Copynumber: 4.6 Consensus size: 40
34593058 CGAATGATGT
* * * *
34593068 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* *
34593108 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGTTACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
*
34593148 CCGGGCTAAG-CCCGAAGGCATTGGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34593186 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
34593227 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
34593252 AACGAGTAGC
Statistics
Matches: 126, Mismatches: 11, Indels: 14
0.83 0.07 0.09
Matches are distributed among these distances:
39 35 0.28
40 81 0.64
41 10 0.08
ACGTcount: A:0.24, C:0.23, G:0.28, T:0.25
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:34593273 original size:79 final size:79
Alignment explanation
Indices: 34593120--34593284 Score: 210
Period size: 79 Copynumber: 2.1 Consensus size: 79
34593110 GGACTAAGAT
* **
34593120 CCGAAGGCATTTGTGCGAGTTACTAATTCCGGGCTAAGCCCGAAGGCATTGGTGCGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
*
34593185 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
34593199 CCGAAGGCATTTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCATTTGTGCGAGTTACTAAT-ACCGGGCTAAG-CCCGAAGGCATTGGAACGAGTTA-C
* *
34593262 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
34593278 CCGAAGG
1 CCGAAGG
34593285 TACGTGATTC
Statistics
Matches: 75, Mismatches: 8, Indels: 6
0.84 0.09 0.07
Matches are distributed among these distances:
78 2 0.03
79 49 0.65
80 24 0.32
ACGTcount: A:0.25, C:0.21, G:0.28, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGTTACTAATACCGGGCTAAGCCCGAAGGCATTGGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:34599867 original size:40 final size:40
Alignment explanation
Indices: 34599784--34600008 Score: 186
Period size: 40 Copynumber: 5.7 Consensus size: 40
34599774 TTGAATGCTG
* * ** * *
34599784 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGCGAATATA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGC-GAGATACTAAA
** *
34599824 TCCGGACTAAGAT-CCGAAGGCCTTTGTGCGAGATACTAAA
1 TCCGGGTTAAG-TCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
34599864 TCCGGGTTAAGTCCCGAGGGCATTTGTGCGAGTTATTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * **
34599904 GCCGGGTTAAGTCCCGAAGGCATTCGTGCGAGTTGTTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * * * *
34599944 TCCGGGTTACGTCCCGAAGGCA-TGGGGTGAGTTACTAAA
1 TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
* * *
34599983 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGTTAAGTCCCGAAGGCATTTG
34600009 AACGAGGAGC
Statistics
Matches: 154, Mismatches: 27, Indels: 8
0.81 0.14 0.04
Matches are distributed among these distances:
39 32 0.21
40 114 0.74
41 8 0.05
ACGTcount: A:0.24, C:0.21, G:0.30, T:0.25
Consensus pattern (40 bp):
TCCGGGTTAAGTCCCGAAGGCATTTGTGCGAGATACTAAA
Found at i:34599922 original size:80 final size:79
Alignment explanation
Indices: 34599837--34600008 Score: 209
Period size: 80 Copynumber: 2.2 Consensus size: 79
34599827 GGACTAAGAT
* * * * *
34599837 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAGGGCATTTGTGCGAGTTATTA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCA-TGGGGCGAGTTACTA
* *
34599902 AAGCCGGGTTAAGTC
65 AAACCGGGCTAAGTC
* * ** * *
34599917 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTCCCGAAGGCATGGGGTGAGTTACTAA
1 CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATGGGGCGAGTTACTAA
*
34599982 AACCGGGCTATGTC
66 AACCGGGCTAAGTC
34599996 CCGAAGGCATTTG
1 CCGAAGGCATTTG
34600009 AACGAGGAGC
Statistics
Matches: 77, Mismatches: 15, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
79 35 0.45
80 42 0.55
ACGTcount: A:0.23, C:0.21, G:0.31, T:0.25
Consensus pattern (79 bp):
CCGAAGGCATTTGTGCGAGATACTAAATCCGGGTTAAGTCCCGAAGGCATGGGGCGAGTTACTAA
AACCGGGCTAAGTC
Found at i:34599988 original size:39 final size:40
Alignment explanation
Indices: 34599837--34600006 Score: 189
Period size: 40 Copynumber: 4.3 Consensus size: 40
34599827 GGACTAAGAT
* * *
34599837 CCGAAGGCCTTTGTGCGAGATACTAAATCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * *
34599877 CCGAGGGCATTTGTGCGAGTTATTAAAGCCGGGTTAAGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
** *
34599917 CCGAAGGCATTCGTGCGAGTTGTTAAATCCGGGTTACGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
* * * * * *
34599957 CCGAAGGCA-TGGGGTGAGTTACTAAAACCGGGCTATGTC
1 CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
34599996 CCGAAGGCATT
1 CCGAAGGCATT
34600007 TGAACGAGGA
Statistics
Matches: 111, Mismatches: 18, Indels: 2
0.85 0.14 0.02
Matches are distributed among these distances:
39 31 0.28
40 80 0.72
ACGTcount: A:0.24, C:0.21, G:0.31, T:0.25
Consensus pattern (40 bp):
CCGAAGGCATTCGTGCGAGTTACTAAATCCGGGTTAAGTC
Found at i:34600026 original size:79 final size:80
Alignment explanation
Indices: 34599859--34600041 Score: 199
Period size: 79 Copynumber: 2.3 Consensus size: 80
34599849 GTGCGAGATA
* * * * * *
34599859 CTAAATCCGGGTTAAGTCCCGAGGGCATTTGTGCGAGTTATTAAAGCCGGGTTAAGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTGGGGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
** **
34599924 CATTCGTGCGAGTTG
66 CATTCGAACGAGGAG
* * * *
34599939 TTAAATCCGGGTTACGTCCCGAAGGCA-TGGGGTGAGTTACTAAAACCGGGCTATGTCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGGCATTGGGGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
*
34600003 CATTTGAACGAGGAG
66 CATTCGAACGAGGAG
* *
34600018 CTATATCC-GGTTAAATCCCGAAGG
1 CTAAATCCGGGTTAAGTCCCGAAGG
34600042 TACGCGAATT
Statistics
Matches: 84, Mismatches: 19, Indels: 2
0.80 0.18 0.02
Matches are distributed among these distances:
78 14 0.17
79 46 0.55
80 24 0.29
ACGTcount: A:0.25, C:0.21, G:0.30, T:0.24
Consensus pattern (80 bp):
CTAAATCCGGGTTAAGTCCCGAAGGCATTGGGGCGAGTTACTAAAACCGGGCTAAGTCCCGAAGG
CATTCGAACGAGGAG
Found at i:34602341 original size:23 final size:23
Alignment explanation
Indices: 34602290--34602390 Score: 107
Period size: 23 Copynumber: 4.4 Consensus size: 23
34602280 TCAGCTTGTA
* *
34602290 AGAGCTTACTGTTTTCAGCTCATT
1 AGAGCTTACCGTTTT-AGCTCAAT
* *
34602314 GGAGCTTACCATTTTAGCTC-AT
1 AGAGCTTACCGTTTTAGCTCAAT
*
34602336 ATGAGCTTACTG-TTTAGCTCAAT
1 A-GAGCTTACCGTTTTAGCTCAAT
* *
34602359 AAAGCTTACCGTTTCAGCTCAAT
1 AGAGCTTACCGTTTTAGCTCAAT
34602382 AGAGCTTAC
1 AGAGCTTAC
34602391 TATTCATCAG
Statistics
Matches: 63, Mismatches: 11, Indels: 7
0.78 0.14 0.09
Matches are distributed among these distances:
22 17 0.27
23 34 0.54
24 12 0.19
ACGTcount: A:0.26, C:0.22, G:0.17, T:0.36
Consensus pattern (23 bp):
AGAGCTTACCGTTTTAGCTCAAT
Found at i:34602367 original size:45 final size:47
Alignment explanation
Indices: 34602290--34602391 Score: 129
Period size: 45 Copynumber: 2.2 Consensus size: 47
34602280 TCAGCTTGTA
* ** *
34602290 AGAGCTTACTGTTTTCAGCTCATTGGAGCTTACCATTTTAGCTC-AT
1 AGAGCTTACTGTTTTCAGCTCAATAAAGCTTACCATTTCAGCTCAAT
*
34602336 ATGAGCTTACTG-TTT-AGCTCAATAAAGCTTACCGTTTCAGCTCAAT
1 A-GAGCTTACTGTTTTCAGCTCAATAAAGCTTACCATTTCAGCTCAAT
34602382 AGAGCTTACT
1 AGAGCTTACT
34602392 ATTCATCAGC
Statistics
Matches: 49, Mismatches: 5, Indels: 5
0.83 0.08 0.08
Matches are distributed among these distances:
45 32 0.65
46 7 0.14
47 10 0.20
ACGTcount: A:0.25, C:0.22, G:0.17, T:0.36
Consensus pattern (47 bp):
AGAGCTTACTGTTTTCAGCTCAATAAAGCTTACCATTTCAGCTCAAT
Found at i:34603345 original size:30 final size:30
Alignment explanation
Indices: 34603309--34603374 Score: 132
Period size: 30 Copynumber: 2.2 Consensus size: 30
34603299 TGTCTCAGCT
34603309 GTGTGTGACACATGATCATGTTGCACGGCC
1 GTGTGTGACACATGATCATGTTGCACGGCC
34603339 GTGTGTGACACATGATCATGTTGCACGGCC
1 GTGTGTGACACATGATCATGTTGCACGGCC
34603369 GTGTGT
1 GTGTGT
34603375 CCCCTGGGGT
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 36 1.00
ACGTcount: A:0.18, C:0.21, G:0.32, T:0.29
Consensus pattern (30 bp):
GTGTGTGACACATGATCATGTTGCACGGCC
Found at i:34606253 original size:11 final size:11
Alignment explanation
Indices: 34606237--34606266 Score: 60
Period size: 11 Copynumber: 2.7 Consensus size: 11
34606227 TGAACAATAA
34606237 TATCATTGCAT
1 TATCATTGCAT
34606248 TATCATTGCAT
1 TATCATTGCAT
34606259 TATCATTG
1 TATCATTG
34606267 ACATATGAAC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.27, C:0.17, G:0.10, T:0.47
Consensus pattern (11 bp):
TATCATTGCAT
Found at i:34608773 original size:30 final size:30
Alignment explanation
Indices: 34608738--34608800 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
34608728 GAAAACCAGA
* * *
34608738 ATAAAGA-AGTCCAAGATAGAGGAATCCATG
1 ATAAAGATA-TCCAAGATACAGAAATCCAAG
*
34608768 ATAAAGATATCCAAGGTACAGAAATCCAAG
1 ATAAAGATATCCAAGATACAGAAATCCAAG
34608798 ATA
1 ATA
34608801 GCATATCATA
Statistics
Matches: 28, Mismatches: 4, Indels: 2
0.82 0.12 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.49, C:0.14, G:0.19, T:0.17
Consensus pattern (30 bp):
ATAAAGATATCCAAGATACAGAAATCCAAG
Found at i:34611920 original size:27 final size:27
Alignment explanation
Indices: 34611879--34611990 Score: 136
Period size: 27 Copynumber: 4.1 Consensus size: 27
34611869 AGGAAGCGTC
*
34611879 CTGGTGGCTATGCCACAATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
* *
34611906 CTAGTGGCTCTGCCACAAATATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
* *
34611933 CTGGTGGCTCTACCACAAATATCTGTAT
1 CTGGTGGCTATGCCACAAATATCTGT-T
* * *
34611961 CTGGTGACTATGTCAC-ATTATCTGTT
1 CTGGTGGCTATGCCACAAATATCTGTT
34611987 CTGG
1 CTGG
34611991 CAGCCATGCT
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
26 5 0.07
27 56 0.76
28 13 0.18
ACGTcount: A:0.21, C:0.23, G:0.21, T:0.36
Consensus pattern (27 bp):
CTGGTGGCTATGCCACAAATATCTGTT
Found at i:34623093 original size:25 final size:24
Alignment explanation
Indices: 34623061--34623112 Score: 59
Period size: 25 Copynumber: 2.1 Consensus size: 24
34623051 AGTTCAAGCA
*
34623061 AGCCATATCAGGAAGCTCACAAAG
1 AGCCATATCAGGAAGCCCACAAAG
* * *
34623085 AGCCTATATTAGGACGCCCATAAAG
1 AGCC-ATATCAGGAAGCCCACAAAG
34623110 AGC
1 AGC
34623113 TGTGTTTGTG
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
24 4 0.17
25 19 0.83
ACGTcount: A:0.38, C:0.25, G:0.21, T:0.15
Consensus pattern (24 bp):
AGCCATATCAGGAAGCCCACAAAG
Found at i:34638536 original size:150 final size:152
Alignment explanation
Indices: 34638240--34638542 Score: 592
Period size: 152 Copynumber: 2.0 Consensus size: 152
34638230 GTTGGGAACA
34638240 TGTTGGCCTAGTGGGTATGTAGGAAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAA
1 TGTTGGCCTAGTGGGTATGTAGGAAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAA
34638305 AACAAAAAAATGAGTGGTTGTTTCCCCCCCCATTTGCCGTGAGCTAAAGAAAGGAAAAGAAAAAC
66 AACAAAAAAATGAGTGGTTGTTTCCCCCCCCATTTGCCGTGAGCTAAAGAAAGGAAAAGAAAAAC
34638370 TTGTTCATCCTTTTTCATCCTC
131 TTGTTCATCCTTTTTCATCCTC
34638392 TGTTGGCCTAGTGGGTATGTAGGAAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAA
1 TGTTGGCCTAGTGGGTATGTAGGAAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAA
34638457 AACAAAAAAATGAGTGGTTGTTT-CCCCCCCA-TTGCCGTGAGCTAAAGAAAGGAAAAGAAAAAC
66 AACAAAAAAATGAGTGGTTGTTTCCCCCCCCATTTGCCGTGAGCTAAAGAAAGGAAAAGAAAAAC
34638520 TTGTTCATCCTTTTTCATCCTC
131 TTGTTCATCCTTTTTCATCCTC
34638542 T
1 T
34638543 TTTGACCGAA
Statistics
Matches: 151, Mismatches: 0, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
150 55 0.36
151 8 0.05
152 88 0.58
ACGTcount: A:0.39, C:0.14, G:0.22, T:0.25
Consensus pattern (152 bp):
TGTTGGCCTAGTGGGTATGTAGGAAAAAAAATAAAATAAGGAGTATGGGTAATAAAGAAAGGAAA
AACAAAAAAATGAGTGGTTGTTTCCCCCCCCATTTGCCGTGAGCTAAAGAAAGGAAAAGAAAAAC
TTGTTCATCCTTTTTCATCCTC
Found at i:34639073 original size:201 final size:201
Alignment explanation
Indices: 34638728--34639127 Score: 800
Period size: 201 Copynumber: 2.0 Consensus size: 201
34638718 AAACTTTGTT
34638728 AAATGATGGAGATGATATTCGGCCATGCATGTTACATTCTTGGTTGGTATTTTGATGTTTGATGT
1 AAATGATGGAGATGATATTCGGCCATGCATGTTACATTCTTGGTTGGTATTTTGATGTTTGATGT
34638793 TGTGGTGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTG
66 TGTGGTGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTG
34638858 CATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGATTGATGATTCTTGAATCTCTTT
131 CATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGATTGATGATTCTTGAATCTCTTT
34638923 TTTTTA
196 TTTTTA
34638929 AAATGATGGAGATGATATTCGGCCATGCATGTTACATTCTTGGTTGGTATTTTGATGTTTGATGT
1 AAATGATGGAGATGATATTCGGCCATGCATGTTACATTCTTGGTTGGTATTTTGATGTTTGATGT
34638994 TGTGGTGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTG
66 TGTGGTGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTG
34639059 CATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGATTGATGATTCTTGAATCTCTTT
131 CATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGATTGATGATTCTTGAATCTCTTT
34639124 TTTT
196 TTTT
34639128 AGCATTTTTG
Statistics
Matches: 199, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
201 199 1.00
ACGTcount: A:0.24, C:0.10, G:0.28, T:0.39
Consensus pattern (201 bp):
AAATGATGGAGATGATATTCGGCCATGCATGTTACATTCTTGGTTGGTATTTTGATGTTTGATGT
TGTGGTGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTG
CATGCTAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGATTGATGATTCTTGAATCTCTTT
TTTTTA
Found at i:34639107 original size:104 final size:104
Alignment explanation
Indices: 34638798--34639108 Score: 241
Period size: 104 Copynumber: 3.1 Consensus size: 104
34638788 GATGTTGTGG
34638798 TGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTGCATGC
1 TGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTGCATGC
34638863 TAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGAT
66 TAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGAT
** * *** *** ***** * * * **
34638902 TGATGATTCTTG-A-ATCTCTT-TTTTTTAAAAT-GATGGAG-ATGATATT-CGGCCA-TGCATG
1 TGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTG-TGTTAATGCCATTGCATG
* * *** * ** *
34638960 TTACAT-TCTTGGTTGGTATTTTGATG--TTTGATGTTGTGG--
65 CTAAATATGAAGCTT-GT-TAATGATGCATGTGATG--GTGGAT
34638999 TGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTGCATGC
1 TGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTGCATGC
34639064 TAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGAT
66 TAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGAT
34639103 TGATGA
1 TGATGA
34639109 TTCTTGAATC
Statistics
Matches: 134, Mismatches: 56, Indels: 34
0.60 0.25 0.15
Matches are distributed among these distances:
97 19 0.14
98 13 0.10
99 20 0.15
100 12 0.09
101 12 0.09
102 20 0.15
103 13 0.10
104 25 0.19
ACGTcount: A:0.25, C:0.09, G:0.29, T:0.37
Consensus pattern (104 bp):
TGATGAGGCATGAAGATGAGTTAAGATTCGGCCTAGGTGGAGTTTGTGTTAATGCCATTGCATGC
TAAATATGAAGCTTGTTAATGATGCATGTGATGGTGGAT
Found at i:34639877 original size:29 final size:29
Alignment explanation
Indices: 34639842--34639918 Score: 100
Period size: 29 Copynumber: 2.6 Consensus size: 29
34639832 CATGAGATTG
* **
34639842 GCACTAAGTGTGCGGGTTTAAATTGTATA
1 GCACTAAGTGTGCGGGTTTAAAGTACATA
* *
34639871 GCACTAAGTGTGCGAGTTTAAAGTACATG
1 GCACTAAGTGTGCGGGTTTAAAGTACATA
34639900 GCACTAAGTGTGCGTGGTT
1 GCACTAAGTGTGCG-GGTT
34639919 GATTATTAAG
Statistics
Matches: 41, Mismatches: 6, Indels: 1
0.85 0.12 0.02
Matches are distributed among these distances:
29 38 0.93
30 3 0.07
ACGTcount: A:0.26, C:0.13, G:0.30, T:0.31
Consensus pattern (29 bp):
GCACTAAGTGTGCGGGTTTAAAGTACATA
Found at i:34640136 original size:174 final size:174
Alignment explanation
Indices: 34639871--34640198 Score: 584
Period size: 174 Copynumber: 1.9 Consensus size: 174
34639861 AAATTGTATA
*
34639871 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGTGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
* *
34639936 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATTAAGGGTGCGACCTTACCGAGTCGA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
**
34640001 TTTTGGACAGCGGGAAAGGTAAGTGTACGAACTTGAAATGCATG
131 TTTTGGACAGCGAAAAAGGTAAGTGTACGAACTTGAAATGCATG
* *
34640045 GCACTAAGTGTGTGAGTTTAAAGTGCATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
1 GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
*
34640110 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACTTTACCGAGTCAA
66 TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
34640175 TTTTGGACAGCGAAAAAGGTAAGT
131 TTTTGGACAGCGAAAAAGGTAAGT
34640199 ACCTTGAGTT
Statistics
Matches: 146, Mismatches: 8, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
174 146 1.00
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (174 bp):
GCACTAAGTGTGCGAGTTTAAAGTACATGGCACTAAGTGTGCGCGGTTGATTATTAAGCACTATG
TGTGCGAACCCAATATATATTTTCTATAAATTATTTACATGAAGGGTGCGACCTTACCGAGTCAA
TTTTGGACAGCGAAAAAGGTAAGTGTACGAACTTGAAATGCATG
Found at i:34642037 original size:41 final size:41
Alignment explanation
Indices: 34641972--34642222 Score: 247
Period size: 41 Copynumber: 6.1 Consensus size: 41
34641962 ACAACTTACT
* * *
34641972 TGATACAAGACACTGGCACGAAGCCTGCTAGGCTCAAAGCC
1 TGATATAATACACTGACACGAAGCCTGCTAGGCTCAAAGCC
* * ** *
34642013 TGATATAACACATTGACATAAAGCCTGCTAGGCACAAAGCC
1 TGATATAATACACTGACACGAAGCCTGCTAGGCTCAAAGCC
* * ** *
34642054 TGATATAATACACCGAAATAAAGCCTACTAGGCAT-AAAGCC
1 TGATATAATACACTGACACGAAGCCTGCTAGGC-TCAAAGCC
* *
34642095 TGATATAATATA-TCGACACGAAGCTTGCTAGGCAT-AAAGCC
1 TGATATAATACACT-GACACGAAGCCTGCTAGGC-TCAAAGCC
* * * *
34642136 TAATATAATACACTGGCACGAAGCTTGCTAGGCACAAAGCC
1 TGATATAATACACTGACACGAAGCCTGCTAGGCTCAAAGCC
* * * *
34642177 TGATATAACACACTGACACGAAGCCTACTAGACTCAAGGCC
1 TGATATAATACACTGACACGAAGCCTGCTAGGCTCAAAGCC
34642218 TGATA
1 TGATA
34642223 CACTATCTCC
Statistics
Matches: 174, Mismatches: 32, Indels: 8
0.81 0.15 0.04
Matches are distributed among these distances:
41 173 0.99
42 1 0.01
ACGTcount: A:0.37, C:0.24, G:0.19, T:0.20
Consensus pattern (41 bp):
TGATATAATACACTGACACGAAGCCTGCTAGGCTCAAAGCC
Found at i:34642219 original size:123 final size:123
Alignment explanation
Indices: 34641988--34642222 Score: 303
Period size: 123 Copynumber: 1.9 Consensus size: 123
34641978 AAGACACTGG
* * *
34641988 CACGAAGCCTGCTAGGCTCAAAGCCTGATATAACACATTGACATAAAGCCTGCTAGGCACAAAGC
1 CACGAAGCCTGCTAGGCTCAAAGCCTAATATAACACACTGACACAAAGCCTGCTAGGCACAAAGC
* * *
34642053 CTGATATAATACACCGAAATAAAGCCTACTAGGCATAAAGCCTGATATAATATATCGA
66 CTGATATAACACACCGAAACAAAGCCTACTAGACATAAAGCCTGATATAATATATCGA
* * * * *
34642111 CACGAAGCTTGCTAGGCAT-AAAGCCTAATATAATACACTGGCACGAAGCTTGCTAGGCACAAAG
1 CACGAAGCCTGCTAGGC-TCAAAGCCTAATATAACACACTGACACAAAGCCTGCTAGGCACAAAG
* * * *
34642175 CCTGATATAACACACTGACACGAAGCCTACTAGAC-TCAAGGCCTGATA
65 CCTGATATAACACACCGAAACAAAGCCTACTAGACAT-AAAGCCTGATA
34642223 CACTATCTCC
Statistics
Matches: 95, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
122 1 0.01
123 93 0.98
124 1 0.01
ACGTcount: A:0.37, C:0.25, G:0.18, T:0.20
Consensus pattern (123 bp):
CACGAAGCCTGCTAGGCTCAAAGCCTAATATAACACACTGACACAAAGCCTGCTAGGCACAAAGC
CTGATATAACACACCGAAACAAAGCCTACTAGACATAAAGCCTGATATAATATATCGA
Found at i:34644003 original size:20 final size:21
Alignment explanation
Indices: 34643978--34644027 Score: 57
Period size: 20 Copynumber: 2.4 Consensus size: 21
34643968 GATATATGTG
* *
34643978 TATTAAAAAATATT-TATAAA
1 TATTAAAAAAGATTAAATAAA
*
34643998 TATTAAATAAGATTAAATAAA
1 TATTAAAAAAGATTAAATAAA
*
34644019 TCTTAAAAA
1 TATTAAAAA
34644028 TAAATATTCA
Statistics
Matches: 24, Mismatches: 5, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
20 12 0.50
21 12 0.50
ACGTcount: A:0.60, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
TATTAAAAAAGATTAAATAAA
Found at i:34644214 original size:6 final size:6
Alignment explanation
Indices: 34644203--34644229 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
34644193 ATATAATAAA
34644203 AAATTT AAATTT AAATTT AAATTT AAA
1 AAATTT AAATTT AAATTT AAATTT AAA
34644230 AAATTATATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (6 bp):
AAATTT
Found at i:34644385 original size:25 final size:25
Alignment explanation
Indices: 34644353--34644404 Score: 95
Period size: 25 Copynumber: 2.1 Consensus size: 25
34644343 GTTTACTGCT
34644353 AAAACGAACCATTTTAACCAATATA
1 AAAACGAACCATTTTAACCAATATA
*
34644378 AAAACGAAGCATTTTAACCAATATA
1 AAAACGAACCATTTTAACCAATATA
34644403 AA
1 AA
34644405 TGGCTCCAAA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
25 26 1.00
ACGTcount: A:0.54, C:0.17, G:0.06, T:0.23
Consensus pattern (25 bp):
AAAACGAACCATTTTAACCAATATA
Done.