Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 1 of 313
Found at i:12376 original size:27 final size:26
Alignment explanation
Indices: 12315--12425 Score: 134
Period size: 27 Copynumber: 4.2 Consensus size: 26
12305 AGCATGGCTG
* *
12315 CCAGAACAG-TAATGTGACAGAGTCA
1 CCAGAACAGATAATGTGGCAGAGCCA
*
12340 CCAGATACAGATAATCGTGGCAGACCCA
1 CCAGA-ACAGATAAT-GTGGCAGAGCCA
12368 CCAGAACAGATATATGTGGCAGAGCCA
1 CCAGAACAGATA-ATGTGGCAGAGCCA
* *
12395 CCAGATCAGATAATTGTGGCATAGCCA
1 CCAGAACAGATAA-TGTGGCAGAGCCA
12422 CCAG
1 CCAG
12426 GACGCTTCCT
Statistics
Matches: 75, Mismatches: 6, Indels: 8
0.84 0.07 0.09
Matches are distributed among these distances:
25 5 0.07
26 5 0.07
27 49 0.65
28 16 0.21
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.16
Consensus pattern (26 bp):
CCAGAACAGATAATGTGGCAGAGCCA
Found at i:12423 original size:54 final size:53
Alignment explanation
Indices: 12315--12425 Score: 152
Period size: 54 Copynumber: 2.1 Consensus size: 53
12305 AGCATGGCTG
*
12315 CCAGAACAGTAATGTGACAGAGTCACCAGATACAGATAATCGTGGCAGACCCA
1 CCAGAACAGTAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGACCCA
* * * *
12368 CCAGAACAGATATATGTGGCAGAGCCACCAGAT-CAGATAATTGTGGCATAGCCA
1 CCAGAACAG-TA-ATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGACCCA
12422 CCAG
1 CCAG
12426 GACGCTTCCT
Statistics
Matches: 51, Mismatches: 5, Indels: 3
0.86 0.08 0.05
Matches are distributed among these distances:
53 9 0.18
54 24 0.47
55 18 0.35
ACGTcount: A:0.36, C:0.24, G:0.23, T:0.16
Consensus pattern (53 bp):
CCAGAACAGTAATGTGACAGAGCCACCAGATACAGATAATCGTGGCAGACCCA
Found at i:12593 original size:28 final size:26
Alignment explanation
Indices: 12531--12593 Score: 72
Period size: 26 Copynumber: 2.3 Consensus size: 26
12521 AAAGTAACCC
** *
12531 TAGGGGTATAATGGTAATTTTACACC
1 TAGGGGTATAACAGTAATTTTACACA
*
12557 TAGGGGTATAACAGTAATTTTCCATACA
1 TAGGGGTATAACAGTAATTTT--ACACA
12585 TAGGGGTAT
1 TAGGGGTAT
12594 TCAAGTAATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
26 19 0.61
28 12 0.39
ACGTcount: A:0.32, C:0.11, G:0.24, T:0.33
Consensus pattern (26 bp):
TAGGGGTATAACAGTAATTTTACACA
Found at i:19045 original size:19 final size:19
Alignment explanation
Indices: 19017--19054 Score: 67
Period size: 19 Copynumber: 2.0 Consensus size: 19
19007 GAGCGAGACT
*
19017 TTGCTGCTTTAGTGGATAA
1 TTGCTACTTTAGTGGATAA
19036 TTGCTACTTTAGTGGATAA
1 TTGCTACTTTAGTGGATAA
19055 GGCGAAGATC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
19 18 1.00
ACGTcount: A:0.24, C:0.11, G:0.24, T:0.42
Consensus pattern (19 bp):
TTGCTACTTTAGTGGATAA
Found at i:23964 original size:50 final size:50
Alignment explanation
Indices: 23910--24007 Score: 160
Period size: 50 Copynumber: 2.0 Consensus size: 50
23900 TCTTTTTCTC
** **
23910 TCTTGGTCATGGTGTTCTTTTGGGTTTTAGTACTTCTTGAGGAGGGAAAG
1 TCTTGGTCATGGTGTTCTTTCAGGTTTTAGTACTTCTCAAGGAGGGAAAG
23960 TCTTGGTCATGGTGTTCTTTCAGGTTTTAGTACTTCTCAAGGAGGGAA
1 TCTTGGTCATGGTGTTCTTTCAGGTTTTAGTACTTCTCAAGGAGGGAA
24008 GGAGTTCTCT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
50 44 1.00
ACGTcount: A:0.17, C:0.12, G:0.30, T:0.41
Consensus pattern (50 bp):
TCTTGGTCATGGTGTTCTTTCAGGTTTTAGTACTTCTCAAGGAGGGAAAG
Found at i:29595 original size:148 final size:148
Alignment explanation
Indices: 29327--29628 Score: 568
Period size: 148 Copynumber: 2.0 Consensus size: 148
29317 ACAATATCAT
29327 TTCATCCATCATGGTAAGAACACATAATTATGCTTCAGAAGCATGGACTCATAATCACAAGGTCA
1 TTCATCCATCATGGTAAGAACACATAATTATGCTTCAGAAGCATGGACTCATAATCACAAGGTCA
*
29392 TCACAAAAGCATTCTCATGAACATTCTTACCACACAATTACAACATATCATGTTCTCTACTAGAG
66 TCACAAAAGCATTCTCATGAACACTCTTACCACACAATTACAACATATCATGTTCTCTACTAGAG
29457 AGGTTACGCACATACCTG
131 AGGTTACGCACATACCTG
*
29475 TTCATCCATCATGGTAAGAACACATAATTATGCTTCAGAAGCATGGGCTCATAATCACAAGGTCA
1 TTCATCCATCATGGTAAGAACACATAATTATGCTTCAGAAGCATGGACTCATAATCACAAGGTCA
*
29540 TCACAAAAGCATTCTCATGAACACTCTTACCACACAATTACAACATATCGTGTTCTCTACTAGAG
66 TCACAAAAGCATTCTCATGAACACTCTTACCACACAATTACAACATATCATGTTCTCTACTAGAG
*
29605 AGGTTACGCACATACTTG
131 AGGTTACGCACATACCTG
29623 TTCATC
1 TTCATC
29629 GTACTCATTC
Statistics
Matches: 150, Mismatches: 4, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
148 150 1.00
ACGTcount: A:0.35, C:0.25, G:0.13, T:0.27
Consensus pattern (148 bp):
TTCATCCATCATGGTAAGAACACATAATTATGCTTCAGAAGCATGGACTCATAATCACAAGGTCA
TCACAAAAGCATTCTCATGAACACTCTTACCACACAATTACAACATATCATGTTCTCTACTAGAG
AGGTTACGCACATACCTG
Found at i:29882 original size:47 final size:46
Alignment explanation
Indices: 29764--29892 Score: 132
Period size: 46 Copynumber: 2.8 Consensus size: 46
29754 TTTCACCCAT
* * * * * **
29764 AATGAACTTGGAACGCAACTCAACGAGCTCGGGTGGTCACATCCAC
1 AATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTGCATCCAC
* * *
29810 AATGATCTCGGAACACAACTCAACGAGTTTGGATGCTTGCATCCAT
1 AATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTGCATCCAC
* * *
29856 AAGTGAACTCGGAATATAACTTAACGAGTTCGGATGC
1 AA-TGAACTCGGAACACAACTCAACGAGTTCGGATGC
29893 CTCATAATTC
Statistics
Matches: 67, Mismatches: 15, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
46 38 0.57
47 29 0.43
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.22
Consensus pattern (46 bp):
AATGAACTCGGAACACAACTCAACGAGTTCGGATGCTTGCATCCAC
Found at i:33686 original size:17 final size:17
Alignment explanation
Indices: 33664--33706 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
33654 GAGATGATTT
*
33664 GTGAATTGGTATGTTTA
1 GTGAATTGATATGTTTA
*
33681 GTGAATTGATATGTTTG
1 GTGAATTGATATGTTTA
*
33698 GGGAATTGA
1 GTGAATTGA
33707 GCATAATAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.26, C:0.00, G:0.33, T:0.42
Consensus pattern (17 bp):
GTGAATTGATATGTTTA
Found at i:38336 original size:33 final size:33
Alignment explanation
Indices: 38299--38365 Score: 82
Period size: 33 Copynumber: 2.0 Consensus size: 33
38289 CTAAGCCCGG
* *
38299 ATCAGTAACAAT-TGGGCCTGAGCCCTATTCAGT
1 ATCAGT-ACAATCTCGGCCTGAGCCCTATACAGT
* *
38332 ATCAGTACAGTCTCGGCCTTAGCCCTATACAGT
1 ATCAGTACAATCTCGGCCTGAGCCCTATACAGT
38365 A
1 A
38366 ATAGCGTGGC
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
32 4 0.14
33 25 0.86
ACGTcount: A:0.27, C:0.27, G:0.19, T:0.27
Consensus pattern (33 bp):
ATCAGTACAATCTCGGCCTGAGCCCTATACAGT
Found at i:40591 original size:44 final size:44
Alignment explanation
Indices: 40541--40661 Score: 126
Period size: 43 Copynumber: 2.8 Consensus size: 44
40531 TCAGGCCTCA
*
40541 GCCTAGCAAGCTT-TAA-GTTGGTGA-ATAATATTATCGGGCTTCGG
1 GCCTAGCAAGCTTATAATGCTGGTGAGAT-A-A-TATCGGGCTTCGG
*
40585 GCCTAGC-AGGTTATAATGCTGGTGAGATAATATCGGGCTTCGG
1 GCCTAGCAAGCTTATAATGCTGGTGAGATAATATCGGGCTTCGG
* * * *
40628 GCCTAGCAGGC-TATAATGCCGGTGAAATGATATC
1 GCCTAGCAAGCTTATAATGCTGGTGAGATAATATC
40662 ATGCTTCAAG
Statistics
Matches: 66, Mismatches: 7, Indels: 9
0.80 0.09 0.11
Matches are distributed among these distances:
43 44 0.67
44 12 0.18
45 8 0.12
46 2 0.03
ACGTcount: A:0.26, C:0.17, G:0.29, T:0.28
Consensus pattern (44 bp):
GCCTAGCAAGCTTATAATGCTGGTGAGATAATATCGGGCTTCGG
Found at i:40622 original size:43 final size:43
Alignment explanation
Indices: 40567--40695 Score: 152
Period size: 43 Copynumber: 3.0 Consensus size: 43
40557 GTTGGTGAAT
* * *
40567 AATATTATCGGGCTTCGGGCCTAGCAGGTTATAATGCTGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
*
40610 GATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
* ** ** * *
40653 AATGATATCATGCTTCAAGTCTAGCAGGCGA-AATGCCGGTGA
1 AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
40695 A
1 A
40696 TGAGTTCAGA
Statistics
Matches: 74, Mismatches: 12, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
42 12 0.16
43 62 0.84
ACGTcount: A:0.26, C:0.19, G:0.29, T:0.26
Consensus pattern (43 bp):
AATAATATCGGGCTTCGGGCCTAGCAGGCTATAATGCCGGTGA
Found at i:40714 original size:41 final size:43
Alignment explanation
Indices: 40630--40722 Score: 122
Period size: 41 Copynumber: 2.2 Consensus size: 43
40620 GGCTTCGGGC
* *
40630 CTAGCAGGCTATAATGCCGGTGAAATGATATCATGCTTCAAGT
1 CTAGCAGGCGATAATGCCGGTGAAATGATATCATGCTTAAAGT
40673 CTAGCAGGCGA-AATGCCGGTG-AATGAGT-TCA-GACTTAAAGT
1 CTAGCAGGCGATAATGCCGGTGAAATGA-TATCATG-CTTAAAGT
40714 CTAGCAGGC
1 CTAGCAGGC
40723 TTCGGGCCAG
Statistics
Matches: 46, Mismatches: 2, Indels: 6
0.85 0.04 0.11
Matches are distributed among these distances:
40 1 0.02
41 24 0.52
42 11 0.24
43 10 0.22
ACGTcount: A:0.30, C:0.19, G:0.27, T:0.24
Consensus pattern (43 bp):
CTAGCAGGCGATAATGCCGGTGAAATGATATCATGCTTAAAGT
Found at i:40776 original size:40 final size:40
Alignment explanation
Indices: 40629--40776 Score: 93
Period size: 40 Copynumber: 3.6 Consensus size: 40
40619 GGGCTTCGGG
* *
40629 CCTAGCAGGCTATAATGCCGGTGAAATG-ATATCATG-CTTCAAG
1 CCTAGCAGGCTA-AATGCCGGTG--ATGAAT-TCA-GACTTAAAA
* * * *
40672 TCTAGCAGGCGAAATGCCGGTGAATGAGTTCAGACTTAAAG
1 CCTAGCAGGCTAAATGCCGGTG-ATGAATTCAGACTTAAAA
* **** * * **
40713 TCTAGCAGGCTTCGGGCCAGTGATGAATTCGGGTTTAAAA
1 CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
40753 CCTAGCAGGCTAAATGCCGGTGAT
1 CCTAGCAGGCTAAATGCCGGTGAT
40777 TTGATAAAAG
Statistics
Matches: 82, Mismatches: 21, Indels: 7
0.75 0.19 0.06
Matches are distributed among these distances:
40 32 0.39
41 29 0.35
42 11 0.13
43 10 0.12
ACGTcount: A:0.28, C:0.20, G:0.28, T:0.24
Consensus pattern (40 bp):
CCTAGCAGGCTAAATGCCGGTGATGAATTCAGACTTAAAA
Found at i:42736 original size:27 final size:26
Alignment explanation
Indices: 42705--42873 Score: 171
Period size: 27 Copynumber: 6.4 Consensus size: 26
42695 GGCATAATCA
* * *
42705 TCATTTTACCATACAGGGATATTATGG
1 TCATTTTACCCTACAGGG-CATTACGG
*
42732 TCA-TTTATCCTACAAGGGCATTACGG
1 TCATTTTACCCTAC-AGGGCATTACGG
* *
42758 TCATTTTACCCTATAGGGGTATTACGG
1 TCATTTTACCCTACA-GGGCATTACGG
* *
42785 TTA-TTTACCCTACAGGTCATTACGG
1 TCATTTTACCCTACAGGGCATTACGG
*
42810 TCATTTTACCCTACAAGGGCATTATGG
1 TCATTTTACCCTAC-AGGGCATTACGG
* * *
42837 TTATTTTACCCTATAGGGGCATTACGA
1 TCATTTTACCCTACA-GGGCATTACGG
42864 TCATTTTACC
1 TCATTTTACC
42874 TATTTTAGGT
Statistics
Matches: 117, Mismatches: 19, Indels: 12
0.79 0.13 0.08
Matches are distributed among these distances:
25 11 0.09
26 39 0.33
27 67 0.57
ACGTcount: A:0.25, C:0.21, G:0.18, T:0.36
Consensus pattern (26 bp):
TCATTTTACCCTACAGGGCATTACGG
Found at i:42749 original size:53 final size:53
Alignment explanation
Indices: 42692--42873 Score: 154
Period size: 53 Copynumber: 3.4 Consensus size: 53
42682 TATGGAGCAT
* *
42692 AAGGGCATAATC-ATCATTTTACCATACAGGGATATTATGGTCATTTATCCTAC
1 AAGGGCATAA-CGATCATTTTACCATACAGGGATATTACGGTCATTTACCCTAC
* * * * * *
42745 AAGGGCATTACGGTCATTTTACCCTATAGGGGTATTACGGTTATTTACCCTAC
1 AAGGGCATAACGATCATTTTACCATACAGGGATATTACGGTCATTTACCCTAC
* * * * * * * *
42798 -AGGTCATTACGGTCATTTTACCCTACAAGGG-CATTATGGTTATTTTACCCTAT
1 AAGGGCATAACGATCATTTTACCATAC-AGGGATATTACGGTCA-TTTACCCTAC
* *
42851 AGGGGCATTACGATCATTTTACC
1 AAGGGCATAACGATCATTTTACC
42874 TATTTTAGGT
Statistics
Matches: 109, Mismatches: 16, Indels: 7
0.83 0.12 0.05
Matches are distributed among these distances:
52 34 0.31
53 56 0.51
54 19 0.17
ACGTcount: A:0.27, C:0.20, G:0.18, T:0.35
Consensus pattern (53 bp):
AAGGGCATAACGATCATTTTACCATACAGGGATATTACGGTCATTTACCCTAC
Found at i:51464 original size:23 final size:23
Alignment explanation
Indices: 51438--51485 Score: 96
Period size: 23 Copynumber: 2.1 Consensus size: 23
51428 GATTATTGAG
51438 AACATGTTGAGCATGTCGAATAA
1 AACATGTTGAGCATGTCGAATAA
51461 AACATGTTGAGCATGTCGAATAA
1 AACATGTTGAGCATGTCGAATAA
51484 AA
1 AA
51486 GTGAAAAGGA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.42, C:0.12, G:0.21, T:0.25
Consensus pattern (23 bp):
AACATGTTGAGCATGTCGAATAA
Found at i:54252 original size:17 final size:19
Alignment explanation
Indices: 54230--54266 Score: 51
Period size: 18 Copynumber: 2.1 Consensus size: 19
54220 TTGGGCTTAA
54230 TGGG-CCACACGGG-CGTG
1 TGGGCCCACACGGGCCGTG
*
54247 TGGGCCCACATGGGCCGTG
1 TGGGCCCACACGGGCCGTG
54266 T
1 T
54267 TATGGGCTTT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
17 4 0.24
18 8 0.47
19 5 0.29
ACGTcount: A:0.11, C:0.30, G:0.43, T:0.16
Consensus pattern (19 bp):
TGGGCCCACACGGGCCGTG
Found at i:64677 original size:40 final size:38
Alignment explanation
Indices: 64623--64701 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 38
64613 ATTTCGCGGT
64623 TCAGCACTCTGACCACTCTTAACTAAAATTTAATTATC
1 TCAGCACTCTGACCACTCTTAACTAAAATTTAATTATC
* *
64661 NTCAGCAGCTCTGACCACTCTTTACTAAGATTTAATTATC
1 -TCAGCA-CTCTGACCACTCTTAACTAAAATTTAATTATC
64701 T
1 T
64702 TTTGCCACCA
Statistics
Matches: 37, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
39 7 0.19
40 30 0.81
ACGTcount: A:0.30, C:0.25, G:0.08, T:0.35
Consensus pattern (38 bp):
TCAGCACTCTGACCACTCTTAACTAAAATTTAATTATC
Found at i:65325 original size:38 final size:38
Alignment explanation
Indices: 65283--65491 Score: 166
Period size: 38 Copynumber: 5.0 Consensus size: 38
65273 TTTCAAATTA
* *
65283 ACATGTATAACCGTGGCATATCCACTTAGCACCAAGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
* *
65321 ACATGTTTAACCGTGGTATATCCAATTAGCACCACGTTAAT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACG-T--T
* *
65362 GAATCAATATATGTAACCGTGGCATATCCACTTAGCACCACGTT
1 --A-C-ATGTA--TAACCGTGGTATATCCACTTAGCACCACGTT
* *
65406 ACATGTATCAATATGTGTAATCGTGGTATATCCACTTACCACCACGTT
1 ACATG------TA----TAACCGTGGTATATCCACTTAGCACCACGTT
*
65454 ACACGTATAACCGTGGTATATCCACTTAGCACCACGTT
1 ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
65492 TTTCCATTTC
Statistics
Matches: 139, Mismatches: 15, Indels: 34
0.74 0.08 0.18
Matches are distributed among these distances:
38 61 0.44
39 1 0.01
40 2 0.01
41 2 0.01
42 3 0.02
43 1 0.01
44 2 0.01
45 3 0.02
46 3 0.02
47 27 0.19
48 34 0.24
ACGTcount: A:0.31, C:0.25, G:0.15, T:0.29
Consensus pattern (38 bp):
ACATGTATAACCGTGGTATATCCACTTAGCACCACGTT
Found at i:65437 original size:48 final size:48
Alignment explanation
Indices: 65323--65461 Score: 199
Period size: 48 Copynumber: 2.9 Consensus size: 48
65313 ACCAAGTTAC
* * *
65323 ATGTTTAACCGTGGTATATCCAATTAGCACCACGTTA-ATGAATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* *
65370 ATATGTAACCGTGGCATATCCACTTAGCACCACGTTACATGTATCAAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
* * *
65418 ATGTGTAATCGTGGTATATCCACTTACCACCACGTTACACGTAT
1 ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTAT
65462 AACCGTGGTA
Statistics
Matches: 81, Mismatches: 10, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
47 33 0.41
48 48 0.59
ACGTcount: A:0.31, C:0.23, G:0.15, T:0.31
Consensus pattern (48 bp):
ATGTGTAACCGTGGTATATCCACTTAGCACCACGTTACATGTATCAAT
Found at i:68607 original size:19 final size:19
Alignment explanation
Indices: 68568--68604 Score: 58
Period size: 19 Copynumber: 2.0 Consensus size: 19
68558 ATAAATCCAA
*
68568 AAATTAAAAGTAAAATACC
1 AAATTAAAAATAAAATACC
68587 AAATTAAAAAT-AAATACC
1 AAATTAAAAATAAAATACC
68605 CAAGAGGTCT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
18 7 0.41
19 10 0.59
ACGTcount: A:0.65, C:0.11, G:0.03, T:0.22
Consensus pattern (19 bp):
AAATTAAAAATAAAATACC
Found at i:73200 original size:27 final size:27
Alignment explanation
Indices: 73169--73239 Score: 108
Period size: 27 Copynumber: 2.6 Consensus size: 27
73159 AATCTCATAT
* *
73169 CTGTAGGCTAGCATTACTGAAAT-CCC
1 CTGTAGGGTAGAATTACTGAAATGCCC
73195 CTTGTAGGGTAGAATTACTGAAATGCCC
1 C-TGTAGGGTAGAATTACTGAAATGCCC
73223 CTGTAGGGTAGAATTAC
1 CTGTAGGGTAGAATTAC
73240 CAAAATACCC
Statistics
Matches: 41, Mismatches: 2, Indels: 3
0.89 0.04 0.07
Matches are distributed among these distances:
26 1 0.02
27 36 0.88
28 4 0.10
ACGTcount: A:0.28, C:0.20, G:0.24, T:0.28
Consensus pattern (27 bp):
CTGTAGGGTAGAATTACTGAAATGCCC
Found at i:73264 original size:27 final size:27
Alignment explanation
Indices: 73234--73346 Score: 158
Period size: 27 Copynumber: 4.2 Consensus size: 27
73224 TGTAGGGTAG
*
73234 AATTACCAAAATA-CCCTAGGTTTATAA
1 AATTACCAAAATACCCCTA-GTTTGTAA
73261 AATTACCAAAATACCCCTAGTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
*
73288 AATTACCAAAATACCCCTACTTTGTAA
1 AATTACCAAAATACCCCTAGTTTGTAA
* *
73315 AATTACCAAAATACCTCT-GATTTGTGA
1 AATTACCAAAATACCCCTAG-TTTGTAA
73342 AATTA
1 AATTA
73347 ATGAAATACC
Statistics
Matches: 79, Mismatches: 5, Indels: 4
0.90 0.06 0.05
Matches are distributed among these distances:
27 74 0.94
28 5 0.06
ACGTcount: A:0.42, C:0.20, G:0.07, T:0.31
Consensus pattern (27 bp):
AATTACCAAAATACCCCTAGTTTGTAA
Found at i:73265 original size:54 final size:54
Alignment explanation
Indices: 73215--73329 Score: 144
Period size: 54 Copynumber: 2.1 Consensus size: 54
73205 AGAATTACTG
* * *
73215 AAATGCCCCT-GTAGGGTAGAATTACCAAAATA-CCCTAGGTTTATAAAATTACCA
1 AAATACCCCTAGT-GGGTAAAATTACCAAAATACCCCTA-CTTTATAAAATTACCA
** *
73269 AAATACCCCTAGTTTGTAAAATTACCAAAATACCCCTACTTTGTAAAATTACCA
1 AAATACCCCTAGTGGGTAAAATTACCAAAATACCCCTACTTTATAAAATTACCA
73323 AAATACC
1 AAATACC
73330 TCTGATTTGT
Statistics
Matches: 53, Mismatches: 6, Indels: 4
0.84 0.10 0.06
Matches are distributed among these distances:
54 46 0.87
55 7 0.13
ACGTcount: A:0.41, C:0.23, G:0.10, T:0.27
Consensus pattern (54 bp):
AAATACCCCTAGTGGGTAAAATTACCAAAATACCCCTACTTTATAAAATTACCA
Found at i:73339 original size:54 final size:53
Alignment explanation
Indices: 73234--73411 Score: 164
Period size: 54 Copynumber: 3.3 Consensus size: 53
73224 TGTAGGGTAG
* *
73234 AATTACCAAAATA-CCCTAGGTTTATAAAATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCCTA-CTTTGTAAAATTACCAAAATA-CCCTGA-TTTGTAA
*
73288 AATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACCTCTGATTTGTGA
1 AATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACC-CTGATTTGTAA
*** * * ** * *
73342 AATTAATGAAATACCCTCGAC-CTGTAAAATTACTGAAATACCCTCGACTTATAA
1 AATTACCAAAATACCC-CTACTTTGTAAAATTACCAAAATACCCT-GATTTGTAA
*
73396 AATTACCAAAGTACCC
1 AATTACCAAAATACCC
73412 TCGATTTACA
Statistics
Matches: 102, Mismatches: 17, Indels: 10
0.79 0.13 0.08
Matches are distributed among these distances:
53 4 0.04
54 89 0.87
55 9 0.09
ACGTcount: A:0.41, C:0.22, G:0.08, T:0.29
Consensus pattern (53 bp):
AATTACCAAAATACCCCTACTTTGTAAAATTACCAAAATACCCTGATTTGTAA
Found at i:73354 original size:81 final size:81
Alignment explanation
Indices: 73234--73419 Score: 189
Period size: 81 Copynumber: 2.3 Consensus size: 81
73224 TGTAGGGTAG
* * **
73234 AATTACCAAAATACCCTAGGTTTATAAAATTACCAAAATACCCCTAG-TTTGTAAAATTACCAAA
1 AATTACCAAAATACCCTAGATTTATAAAATTAACAAAATA-CCCTAGACCTGTAAAATTACCAAA
* *
73298 ATACCC-CTACTTTGTAA
65 ATACCCTCGAC-TTATAA
* * ** * **
73315 AATTACCAAAATACCTCT-GATTTGTGAAATTAATGAAATACCCTCGACCTGTAAAATTACTGAA
1 AATTACCAAAATACC-CTAGATTTATAAAATTAACAAAATACCCTAGACCTGTAAAATTACCAAA
73379 ATACCCTCGACTTATAA
65 ATACCCTCGACTTATAA
* *
73396 AATTACCAAAGTACCCTCGATTTA
1 AATTACCAAAATACCCTAGATTTA
73420 CAGAATTATC
Statistics
Matches: 86, Mismatches: 15, Indels: 8
0.79 0.14 0.07
Matches are distributed among these distances:
80 7 0.08
81 74 0.86
82 5 0.06
ACGTcount: A:0.40, C:0.22, G:0.08, T:0.30
Consensus pattern (81 bp):
AATTACCAAAATACCCTAGATTTATAAAATTAACAAAATACCCTAGACCTGTAAAATTACCAAAA
TACCCTCGACTTATAA
Found at i:73401 original size:27 final size:27
Alignment explanation
Indices: 73341--73415 Score: 98
Period size: 27 Copynumber: 2.8 Consensus size: 27
73331 CTGATTTGTG
* *
73341 AAATTAATGAAATACCCTCGACCTGTA
1 AAATTACTGAAATACCCTCGACCTATA
*
73368 AAATTACTGAAATACCCTCGACTTATA
1 AAATTACTGAAATACCCTCGACCTATA
*
73395 AAATTAC-CAAAGTACCCTCGA
1 AAATTACTGAAA-TACCCTCGA
73416 TTTACAGAAT
Statistics
Matches: 43, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
26 3 0.07
27 40 0.93
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.25
Consensus pattern (27 bp):
AAATTACTGAAATACCCTCGACCTATA
Found at i:73426 original size:27 final size:27
Alignment explanation
Indices: 73380--73731 Score: 406
Period size: 27 Copynumber: 13.2 Consensus size: 27
73370 ATTACTGAAA
* * * ***
73380 TACCCTCGACTTATAAAATTACCAAAG
1 TACCCTCGATTTACAGAATTACCATTT
* *
73407 TACCCTCGATTTACAGAATTATCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
73434 TACCCTTGATTTACAAAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
73461 TACCCTTGATTTACAAAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73488 TACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
73515 TACCCTCAATTTACAAAATTATCATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73542 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* **
73569 TACCCTCGATTTATAGAATTACTGTTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73596 TACCCTCGATTTACAAAATTACC--TT
1 TACCCTCGATTTACAGAATTACCATTT
73621 T--CCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
73646 TACCCTTGATTTATAGAATTACTATTT
1 TACCCTCGATTTACAGAATTACCATTT
*
73673 TACCCTCGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAGAATTACCATTT
* * *
73700 TACCCTCCATTTATAAAATTACCATTT
1 TACCCTCGATTTACAGAATTACCATTT
73727 TACCC
1 TACCC
73732 CTAGGGTGTT
Statistics
Matches: 277, Mismatches: 44, Indels: 8
0.84 0.13 0.02
Matches are distributed among these distances:
23 19 0.07
25 6 0.02
27 252 0.91
ACGTcount: A:0.30, C:0.23, G:0.07, T:0.39
Consensus pattern (27 bp):
TACCCTCGATTTACAGAATTACCATTT
Found at i:74011 original size:27 final size:26
Alignment explanation
Indices: 73967--74018 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
73957 CTCGCTGCAA
*
73967 TCTGGTGGCCTCGCCACATATATCTGT
1 TCTGGTGACCTCGCCACA-ATATCTGT
* *
73994 TCTGGTGACTTCGTCACAATATCTG
1 TCTGGTGACCTCGCCACAATATCTG
74019 GCAGCCTCGC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 7 0.32
27 15 0.68
ACGTcount: A:0.17, C:0.27, G:0.21, T:0.35
Consensus pattern (26 bp):
TCTGGTGACCTCGCCACAATATCTGT
Found at i:74086 original size:26 final size:27
Alignment explanation
Indices: 74057--74116 Score: 77
Period size: 27 Copynumber: 2.3 Consensus size: 27
74047 CCAAATATAT
*
74057 ATATCTGT-TCTGGTGGCCTAGCCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
* * *
74083 ATATCTGTATCTGGTGACTTCGTCACA
1 ATATCTGTATCTGGTGACCTAGCCACA
74110 ATATCTG
1 ATATCTG
74117 GCAGCCTCGC
Statistics
Matches: 29, Mismatches: 4, Indels: 1
0.85 0.12 0.03
Matches are distributed among these distances:
26 8 0.28
27 21 0.72
ACGTcount: A:0.22, C:0.23, G:0.20, T:0.35
Consensus pattern (27 bp):
ATATCTGTATCTGGTGACCTAGCCACA
Found at i:74272 original size:6 final size:6
Alignment explanation
Indices: 74235--74334 Score: 80
Period size: 6 Copynumber: 16.3 Consensus size: 6
74225 TTGCATTCAC
* * *
74235 ATTCTG CTTTTG ATTCTG -TTACCTG ATACTG ATTCTG ATTCTG ATTCTG
1 ATTCTG ATTCTG ATTCTG ATT--CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * *
74284 ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTC ATTTTG ATTCT- AGTTCTG
1 ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG A-TTCTG
74333 AT
1 AT
74335 AATGTTTTTT
Statistics
Matches: 74, Mismatches: 12, Indels: 16
0.73 0.12 0.16
Matches are distributed among these distances:
5 4 0.05
6 61 0.82
7 7 0.09
8 2 0.03
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (6 bp):
ATTCTG
Found at i:74296 original size:43 final size:43
Alignment explanation
Indices: 74235--74334 Score: 130
Period size: 43 Copynumber: 2.3 Consensus size: 43
74225 TTGCATTCAC
* * * *
74235 ATTCTGCTTTTGATTCTGTTACCTGATACTGATTCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTCATTCTG
* *
74278 ATTCTGATTCTGATTCTGTCACCTGATTCTGATTCTCATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTCATTCTG
74321 ATTCT-AGTTCTGAT
1 ATTCTGA-TTCTGAT
74335 AATGTTTTTT
Statistics
Matches: 50, Mismatches: 6, Indels: 2
0.86 0.10 0.03
Matches are distributed among these distances:
42 1 0.02
43 49 0.98
ACGTcount: A:0.17, C:0.19, G:0.15, T:0.49
Consensus pattern (43 bp):
ATTCTGATTCTGATTCTGTCACCTGATACTGATTCTCATTCTG
Found at i:76226 original size:27 final size:27
Alignment explanation
Indices: 76196--76278 Score: 112
Period size: 27 Copynumber: 3.1 Consensus size: 27
76186 ATCTCATATC
* *
76196 TGTAGGCTAGCATTACTGAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
* *
76223 TGTAGGGTAGAATTACTGAAATGCCCC
1 TGTAGGGTAGAATTACTGAAATACCCT
**
76250 TGTAGGGTAGAATTACCAAAATACCCT
1 TGTAGGGTAGAATTACTGAAATACCCT
76277 TG
1 TG
76279 GTTTATAAAA
Statistics
Matches: 48, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
27 48 1.00
ACGTcount: A:0.31, C:0.19, G:0.22, T:0.28
Consensus pattern (27 bp):
TGTAGGGTAGAATTACTGAAATACCCT
Found at i:76290 original size:27 final size:27
Alignment explanation
Indices: 76260--76455 Score: 189
Period size: 27 Copynumber: 7.3 Consensus size: 27
76250 TGTAGGGTAG
* *
76260 AATTACCAAAATACCCTTGGTTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
* *
76287 AATTGCCAAAATA-CCTCTGGTTTGTAA
1 AATTACCAAAATACCCT-TGATTTGTAA
*
76314 AATTACCAAAATACCCCT-AGTTTGTAA
1 AATTACCAAAATACCCTTGA-TTTGTAA
* *
76341 AATTACCAAAATACCTTTGATTTGTGA
1 AATTACCAAAATACCCTTGATTTGTAA
*** **
76368 AATTAATGAAATACCCTTGACATGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
** * *
76395 AATTACTGAAATACCCTCGACTTGTAA
1 AATTACCAAAATACCCTTGATTTGTAA
* * *
76422 AATTACCAAAGTACCCTCGATTTATAA
1 AATTACCAAAATACCCTTGATTTGTAA
76449 AATTACC
1 AATTACC
76456 TTTTTACCCT
Statistics
Matches: 142, Mismatches: 23, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
26 3 0.02
27 136 0.96
28 3 0.02
ACGTcount: A:0.39, C:0.19, G:0.10, T:0.32
Consensus pattern (27 bp):
AATTACCAAAATACCCTTGATTTGTAA
Found at i:76463 original size:27 final size:27
Alignment explanation
Indices: 76433--76815 Score: 454
Period size: 27 Copynumber: 14.2 Consensus size: 27
76423 ATTACCAAAG
*
76433 TACCCTCGATTTATAAAATTACCTTTT
1 TACCCTCGATTTACAAAATTACCTTTT
* *
76460 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* *
76487 TACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCTTTT
*
76514 TACCCTCGATTTACAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* * *
76541 TACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTACAAAATTACCTTTT
76568 TACCCTCGATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
*
76595 TACCCTCGATTTACAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
*
76622 TACCCTCGATTTACAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCTTTT
* *
76649 TACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTACAAAATTACCTTTT
76676 TACCCTCGATTTACAAAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* * * *
76703 TATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCTTTT
* *
76730 TACCCTCGATTTATAGAATTA-CTATTT
1 TACCCTCGATTTACAAAATTACCT-TTT
* * *
76757 TACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTACAAAATTACCTTTT
* *
76784 TACCCTCGATTTATAAAATTACCATTT
1 TACCCTCGATTTACAAAATTACCTTTT
76811 TACCC
1 TACCC
76816 CTAGGGTGTT
Statistics
Matches: 314, Mismatches: 32, Indels: 20
0.86 0.09 0.05
Matches are distributed among these distances:
26 6 0.02
27 303 0.96
28 5 0.02
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.41
Consensus pattern (27 bp):
TACCCTCGATTTACAAAATTACCTTTT
Found at i:76464 original size:54 final size:54
Alignment explanation
Indices: 76406--76815 Score: 559
Period size: 54 Copynumber: 7.6 Consensus size: 54
76396 ATTACTGAAA
* * * *** * * *
76406 TACCCTCGACTTGTAAAATTACCAAAGTACCCTCGATTTATAAAATTACCTTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
76460 TACCCTCGATTTATAGAATTACTATTTTACCCTCGATTTACAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * * * *
76514 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTATCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* **
76568 TACCCTCGATTTACAAAATTACTATTTTACCCTCGATTTACAGAATTACTATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
76622 TACCCTCGATTTACAAAATTACCATTTTACCCTCGATTTACAGAATTACCATTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* * *
76676 TACCCTCGATTTACAAAATTACTATTTTATCCTCAATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
* *
76730 TACCCTCGATTTATAGAATTACTATTTTACCCTTGATTTACAGAATTACCGTTT
1 TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
*
76784 TACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTATAAAATTACTATTTTACCC
76816 CTAGGGTGTT
Statistics
Matches: 325, Mismatches: 31, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
54 325 1.00
ACGTcount: A:0.31, C:0.23, G:0.07, T:0.40
Consensus pattern (54 bp):
TACCCTCGATTTATAAAATTACTATTTTACCCTCGATTTACAGAATTACCGTTT
Found at i:76806 original size:81 final size:81
Alignment explanation
Indices: 76433--76815 Score: 545
Period size: 81 Copynumber: 4.7 Consensus size: 81
76423 ATTACCAAAG
* * * *
76433 TACCCTCGATTTATAAAATTACCT-TTTTACCCTCGATTTATAGAATTACTATTTTACCCTCGAT
1 TACCCTCGATTTACAGAATTA-CTATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGAT
*
76497 TTACAAAATTA-TCGTTT
65 TTACAAAATTACT-ATTT
* *
76514 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTATCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
76579 TACAAAATTACTATTT
66 TACAAAATTACTATTT
*
76595 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTACAAAATTACCATTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
* *
76660 TACAGAATTACCATTT
66 TACAAAATTACTATTT
* * * * * *
76676 TACCCTCGATTTACAAAATTACTATTTTATCCTCAATTTACAGAATTACCGTTTTACCCTCGATT
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
* *
76741 TATAGAATTACTATTT
66 TACAAAATTACTATTT
* **
76757 TACCCTTGATTTACAGAATTACCGTTTTACCCTCGATTTATAAAATTACCATTTTACCC
1 TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCC
76816 CTAGGGTGTT
Statistics
Matches: 272, Mismatches: 28, Indels: 4
0.89 0.09 0.01
Matches are distributed among these distances:
80 2 0.01
81 269 0.99
82 1 0.00
ACGTcount: A:0.30, C:0.22, G:0.06, T:0.41
Consensus pattern (81 bp):
TACCCTCGATTTACAGAATTACTATTTTACCCTCGATTTATAAAATTACCATTTTACCCTCGATT
TACAAAATTACTATTT
Found at i:77357 original size:31 final size:31
Alignment explanation
Indices: 77322--77425 Score: 136
Period size: 31 Copynumber: 3.4 Consensus size: 31
77312 TTGCATTCAC
* * ** *
77322 ATTCTGATTTTGATTTTGTGTCCTGATACTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
* * *
77353 ATTCTGATTCTAATTCTGTCACCTAATTTTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
77384 ATTCTGATTCTGATTCTGTCACCTGATTCTG
1 ATTCTGATTCTGATTCTGTCACCTGATTCTG
77415 ATTCTGATTCT
1 ATTCTGATTCT
77426 CATTTTGATT
Statistics
Matches: 62, Mismatches: 11, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 62 1.00
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.49
Consensus pattern (31 bp):
ATTCTGATTCTGATTCTGTCACCTGATTCTG
Found at i:77361 original size:6 final size:6
Alignment explanation
Indices: 77322--77446 Score: 69
Period size: 6 Copynumber: 20.3 Consensus size: 6
77312 TTGCATTCAC
* * * *
77322 ATTCTG ATTTTG ATTTTG -TGTCCTG ATACTG ATTCTG ATTCTA ATTCTG
1 ATTCTG ATTCTG ATTCTG AT-T-CTG ATTCTG ATTCTG ATTCTG ATTCTG
* * * *
77371 -TCACCTA ATTTTG ATTCTG ATTCTG ATTCTG -TCACCTG ATTCTG ATTCTG
1 AT--TCTG ATTCTG ATTCTG ATTCTG ATTCTG AT--TCTG ATTCTG ATTCTG
* *
77421 ATTCTC ATTTTG ATTCT- AGTTCTG AT
1 ATTCTG ATTCTG ATTCTG A-TTCTG AT
77447 AATGTTTCTT
Statistics
Matches: 90, Mismatches: 18, Indels: 22
0.69 0.14 0.17
Matches are distributed among these distances:
5 4 0.04
6 75 0.83
7 8 0.09
8 3 0.03
ACGTcount: A:0.18, C:0.18, G:0.14, T:0.50
Consensus pattern (6 bp):
ATTCTG
Found at i:77423 original size:37 final size:34
Alignment explanation
Indices: 77344--77437 Score: 95
Period size: 31 Copynumber: 2.8 Consensus size: 34
77334 ATTTTGTGTC
* *
77344 CTGATACTGATTCTGATTCTAATTCTGTCACCTA
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCTA
*
77378 ---ATTTTGATTCTGATTCTGATTCTGTCACCTGA
1 CTGATTCTGATTCTGATTCTGATTCTGTCACCT-A
* *
77410 TTCTGATTCTGATTCTCATTTTGATTCT
1 --CTGATTCTGATTCTGATTCTGATTCT
77438 AGTTCTGATA
Statistics
Matches: 48, Mismatches: 6, Indels: 9
0.76 0.10 0.14
Matches are distributed among these distances:
31 27 0.56
32 1 0.02
37 20 0.42
ACGTcount: A:0.19, C:0.20, G:0.13, T:0.48
Consensus pattern (34 bp):
CTGATTCTGATTCTGATTCTGATTCTGTCACCTA
Found at i:88278 original size:27 final size:28
Alignment explanation
Indices: 88169--88291 Score: 167
Period size: 28 Copynumber: 4.4 Consensus size: 28
88159 GAGATTGGCG
* * * *
88169 CTAAGTGTGCGGGTTTAAATTGTACAGCA
1 CTAAGTGTGCGAGTTT-GATTATATAGCA
*
88198 CTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
88226 CTAAGTGTGCGAGTTTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
88254 CTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTGATTATATAGCA
*
88281 CTGAGTGTGCG
1 CTAAGTGTGCG
88292 GACTTAATAT
Statistics
Matches: 85, Mismatches: 9, Indels: 2
0.89 0.09 0.02
Matches are distributed among these distances:
27 23 0.27
28 47 0.55
29 15 0.18
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (28 bp):
CTAAGTGTGCGAGTTTGATTATATAGCA
Found at i:88281 original size:55 final size:57
Alignment explanation
Indices: 88169--88291 Score: 169
Period size: 55 Copynumber: 2.2 Consensus size: 57
88159 GAGATTGGCG
* * * *
88169 CTAAGTGTGCGGGTTTAAATTGTACAGCACTAAGTGTGCGAGTTTGATTATGTAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
* *
88226 CTAAGTGTGCGAGTTT-GATTATATAGCACTAAGTGTGCAAG-TTGATTATATAGCA
1 CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
*
88281 CTGAGTGTGCG
1 CTAAGTGTGCG
88292 GACTTAATAT
Statistics
Matches: 59, Mismatches: 7, Indels: 2
0.87 0.10 0.03
Matches are distributed among these distances:
55 23 0.39
56 21 0.36
57 15 0.25
ACGTcount: A:0.27, C:0.12, G:0.28, T:0.33
Consensus pattern (57 bp):
CTAAGTGTGCGAGTTTAAATTATACAGCACTAAGTGTGCAAGTTTGATTATATAGCA
Found at i:88302 original size:27 final size:27
Alignment explanation
Indices: 88194--88304 Score: 89
Period size: 28 Copynumber: 4.0 Consensus size: 27
88184 TAAATTGTAC
** * *
88194 AGCACTAAGTGTGCGAGTTTGATTATGT
1 AGCACTAAGTGTGC-AACTTGAATATAT
** *
88222 AGCACTAAGTGTGCGAGTTTGATTATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
* *
88250 AGCACTAAGTGTGCAAGTTGATTATAT
1 AGCACTAAGTGTGCAACTTGAATATAT
* *
88277 AGCACTGAGTGTGCGGACTT-AATATAT
1 AGCACTAAGTGTGC-AACTTGAATATAT
88304 A
1 A
88305 CTTTTGAATC
Statistics
Matches: 75, Mismatches: 7, Indels: 3
0.88 0.08 0.04
Matches are distributed among these distances:
27 31 0.41
28 44 0.59
ACGTcount: A:0.30, C:0.12, G:0.25, T:0.33
Consensus pattern (27 bp):
AGCACTAAGTGTGCAACTTGAATATAT
Found at i:92643 original size:46 final size:46
Alignment explanation
Indices: 92593--92899 Score: 569
Period size: 46 Copynumber: 6.7 Consensus size: 46
92583 TTGAGCATCC
92593 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
92639 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
92685 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
92731 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
92777 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* * *
92823 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAACGCCC
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
* *
92869 GAGCTCGTTGAGTTGAGTCTGAGTTCACTTA
1 GAACTCGTTGAGTTGAGTCCGAGTTCACTTA
92900 GGGGTGGGTT
Statistics
Matches: 256, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 256 1.00
ACGTcount: A:0.21, C:0.18, G:0.28, T:0.32
Consensus pattern (46 bp):
GAACTCGTTGAGTTGAGTCCGAGTTCACTTATGGATGCGAATGTCT
Found at i:95206 original size:27 final size:27
Alignment explanation
Indices: 95174--95407 Score: 274
Period size: 27 Copynumber: 8.7 Consensus size: 27
95164 CACATCACAT
* *
95174 AGGGCAAAACAATCATCTTACCAT-ATA
1 AGGGCAAAACAGTCATTTTACC-TCATA
* *
95201 AGGGCAAAATAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCTCATA
* *
95228 AGGACAAAACAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCTCATA
* * *
95255 GGGGCAAAGCAGTCATTTTACCACATA
1 AGGGCAAAACAGTCATTTTACCTCATA
*
95282 AGGGCAAAACAGTCATTTTACCTCATG
1 AGGGCAAAACAGTCATTTTACCTCATA
* * *
95309 AGGGCAAAATAGTCATTTTACATCATG
1 AGGGCAAAACAGTCATTTTACCTCATA
* *
95336 AGGGAAAAATC-GTCATTTTACCTCATG
1 AGGGCAAAA-CAGTCATTTTACCTCATA
* *
95363 AGGGAAAAACAGTTATTTTACCTCATA
1 AGGGCAAAACAGTCATTTTACCTCATA
*
95390 AGGGCAAAACAATCATTT
1 AGGGCAAAACAGTCATTT
95408 ATTAATATGG
Statistics
Matches: 179, Mismatches: 25, Indels: 6
0.85 0.12 0.03
Matches are distributed among these distances:
26 2 0.01
27 177 0.99
ACGTcount: A:0.38, C:0.19, G:0.17, T:0.26
Consensus pattern (27 bp):
AGGGCAAAACAGTCATTTTACCTCATA
Found at i:99259 original size:46 final size:46
Alignment explanation
Indices: 99192--99316 Score: 232
Period size: 46 Copynumber: 2.7 Consensus size: 46
99182 AACCCGCCCC
*
99192 TAAGTGAACTCAGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
99238 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
*
99284 TAAGTGAACTCGGACTCAACTCAACGAGTTCGG
1 TAAGTGAACTCGGACTCAACTCAACGAGCTCGG
99317 ATGCTCAACC
Statistics
Matches: 77, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
46 77 1.00
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
Found at i:110886 original size:13 final size:13
Alignment explanation
Indices: 110868--110899 Score: 55
Period size: 13 Copynumber: 2.5 Consensus size: 13
110858 CATATACCAA
110868 ATTCATTCATATG
1 ATTCATTCATATG
110881 ATTCATTCATATG
1 ATTCATTCATATG
*
110894 AATCAT
1 ATTCAT
110900 AACATAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
13 18 1.00
ACGTcount: A:0.34, C:0.16, G:0.06, T:0.44
Consensus pattern (13 bp):
ATTCATTCATATG
Found at i:111227 original size:43 final size:43
Alignment explanation
Indices: 111180--111284 Score: 115
Period size: 42 Copynumber: 2.4 Consensus size: 43
111170 ATACGTGGTT
*
111180 TTACATGTAATCAAATATCGATG-CCACTGTCCCAGACAGGATC
1 TTACACGTAATCAAATATCGATGTCCA-TGTCCCAGACAGGATC
* * * *
111223 TTACACGAAATCAAATA-AGATGTCGATGTCCCAGACAGGGTC
1 TTACACGTAATCAAATATCGATGTCCATGTCCCAGACAGGATC
* *
111265 TGACACGTAAATCACATATC
1 TTACACGT-AATCAAATATC
111285 AGAAATCCTA
Statistics
Matches: 50, Mismatches: 9, Indels: 5
0.78 0.14 0.08
Matches are distributed among these distances:
42 25 0.50
43 25 0.50
ACGTcount: A:0.35, C:0.24, G:0.17, T:0.24
Consensus pattern (43 bp):
TTACACGTAATCAAATATCGATGTCCATGTCCCAGACAGGATC
Found at i:118822 original size:43 final size:41
Alignment explanation
Indices: 118760--118877 Score: 137
Period size: 43 Copynumber: 2.8 Consensus size: 41
118750 AGCTCGTACA
*
118760 ATGCCAATGTCCCAAACAGGGTCTTACATGTAATTAAATATCG
1 ATGCC-ATGTCCCAGACAGGGTCTTACATGTAATTAAATA-CG
* *
118803 ATGCCACTGTCCCAGACAGGGTCTTACATGAAATTAAATAGG
1 ATGCCA-TGTCCCAGACAGGGTCTTACATGTAATTAAATACG
* * **
118845 ATGTCGATGTCCCAGATAATGTCTTACATGTAA
1 ATG-CCATGTCCCAGACAGGGTCTTACATGTAA
118878 ATCACATATT
Statistics
Matches: 65, Mismatches: 8, Indels: 5
0.83 0.10 0.06
Matches are distributed among these distances:
42 27 0.42
43 38 0.58
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (41 bp):
ATGCCATGTCCCAGACAGGGTCTTACATGTAATTAAATACG
Found at i:120569 original size:14 final size:14
Alignment explanation
Indices: 120546--120588 Score: 52
Period size: 14 Copynumber: 3.0 Consensus size: 14
120536 ATGGAGAGAT
120546 CAAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
*
120560 CAAAATAAAAAGAATG
1 CAAAAGAAAAAG-A-G
120576 -AAAAGAAAAAGAG
1 CAAAAGAAAAAGAG
120589 TGGGAAAAGT
Statistics
Matches: 25, Mismatches: 2, Indels: 5
0.78 0.06 0.16
Matches are distributed among these distances:
13 1 0.04
14 12 0.48
15 11 0.44
16 1 0.04
ACGTcount: A:0.72, C:0.05, G:0.19, T:0.05
Consensus pattern (14 bp):
CAAAAGAAAAAGAG
Found at i:123148 original size:13 final size:13
Alignment explanation
Indices: 123130--123154 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
123120 TAATGGTATA
123130 TTGAATCCATGAC
1 TTGAATCCATGAC
123143 TTGAATCCATGA
1 TTGAATCCATGA
123155 AAATTTAGTA
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.32, C:0.20, G:0.16, T:0.32
Consensus pattern (13 bp):
TTGAATCCATGAC
Found at i:123738 original size:27 final size:27
Alignment explanation
Indices: 123704--123882 Score: 173
Period size: 27 Copynumber: 6.6 Consensus size: 27
123694 TAAATTGTAC
123704 AGCACTAAGTGTGCGGTTTGACTATGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *** *
123731 TGCACTAAGTGTGCGAAATGAATATG-
1 AGCACTAAGTGTGCGGTTTGACTATGT
** * *
123757 ATGCACTAAGTGTGCGAATTGACCATGC
1 A-GCACTAAGTGTGCGGTTTGACTATGT
*
123785 GGCACTAAGTGTGCGAGTTTGACTATGT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
** *
123813 AGCACTAAGTGTGCAATTTGATTATGT
1 AGCACTAAGTGTGCGGTTTGACTATGT
* *
123840 AGCACTAAGTGTGCGAG-TTGATTATAT
1 AGCACTAAGTGTGCG-GTTTGACTATGT
*
123867 AGCACTGAGTGTGCGG
1 AGCACTAAGTGTGCGG
123883 ACTCGATATA
Statistics
Matches: 126, Mismatches: 22, Indels: 9
0.80 0.14 0.06
Matches are distributed among these distances:
26 1 0.01
27 104 0.83
28 21 0.17
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (27 bp):
AGCACTAAGTGTGCGGTTTGACTATGT
Found at i:123818 original size:82 final size:81
Alignment explanation
Indices: 123705--123860 Score: 235
Period size: 82 Copynumber: 1.9 Consensus size: 81
123695 AAATTGTACA
*
123705 GCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAA-ATGAATATG-ATGCACTAAGT
1 GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGC-AATATGAATATGTA-GCACTAAGT
123768 GTGCGAATTGACCATGCG
64 GTGCGAATTGACCATGCG
* *
123786 GCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGCAATTTGATTATGTAGCACTAAGTG
1 GCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCAATATGAATATGTAGCACTAAGTG
*
123851 TGCGAGTTGA
65 TGCGAATTGA
123861 TTATATAGCA
Statistics
Matches: 68, Mismatches: 4, Indels: 5
0.88 0.05 0.06
Matches are distributed among these distances:
81 16 0.24
82 51 0.75
83 1 0.01
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
GCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCAATATGAATATGTAGCACTAAGTGT
GCGAATTGACCATGCG
Found at i:123872 original size:82 final size:81
Alignment explanation
Indices: 123701--123882 Score: 233
Period size: 82 Copynumber: 2.2 Consensus size: 81
123691 GATTAAATTG
*
123701 TACAGCACTAAGTGTGCGGTTTGACTATGTTGCACTAAGTGTGCGAAATGAATATGATGCACTAA
1 TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
123766 GTGTGCGAATTGACCA
66 GTGTGCGAATTGACCA
* * * *
123782 TGCGGCACTAAGTGTGCGAGTTTGACTATGTAGCACTAAGTGTGC-AATTTGATTATG-TAGCAC
1 TACAGCACTAAGTGTGCG-GTTTGACTATGTAGCACTAAGTGTGCGAA-ATGAATATGAT-GCAC
* **
123845 TAAGTGTGCGAGTTGATTA
63 TAAGTGTGCGAATTGACCA
* *
123864 TATAGCACTGAGTGTGCGG
1 TACAGCACTAAGTGTGCGG
123883 ACTCGATATA
Statistics
Matches: 86, Mismatches: 12, Indels: 6
0.83 0.12 0.06
Matches are distributed among these distances:
81 20 0.23
82 66 0.77
ACGTcount: A:0.27, C:0.15, G:0.28, T:0.30
Consensus pattern (81 bp):
TACAGCACTAAGTGTGCGGTTTGACTATGTAGCACTAAGTGTGCGAAATGAATATGATGCACTAA
GTGTGCGAATTGACCA
Found at i:129660 original size:47 final size:47
Alignment explanation
Indices: 129515--129690 Score: 182
Period size: 47 Copynumber: 3.7 Consensus size: 47
129505 CACTCTTGTA
* ** * *
129515 AGCCAGTGTAAGACCATCTCCAGGACATGGCATC-AGCTTTCAGACGA-G
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGA-C-TTGAG-CTATG
* * * * *
129563 AGCTAGTGTAAGA-CATGTCAGGGATAT-GCATCGACTAAGAGATGAT-
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACT-TGAGCT-ATG
129609 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGCTATG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGCTATG
129656 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
1 AGCCAGTGTAAGACCATGTCTGGGACATGGCATCG
129691 GCACGTAACC
Statistics
Matches: 107, Mismatches: 14, Indels: 15
0.79 0.10 0.11
Matches are distributed among these distances:
45 1 0.01
46 23 0.21
47 62 0.58
48 21 0.20
ACGTcount: A:0.29, C:0.21, G:0.28, T:0.22
Consensus pattern (47 bp):
AGCCAGTGTAAGACCATGTCTGGGACATGGCATCGACTTGAGCTATG
Found at i:130774 original size:21 final size:21
Alignment explanation
Indices: 130723--130775 Score: 54
Period size: 21 Copynumber: 2.5 Consensus size: 21
130713 GGGTGTGGGG
*
130723 CACGAGCGTGTTACCCTCCTA
1 CACGGGCGTGTTACCCTCCTA
* * *
130744 GACTGACGTGTTACCCTTCC-A
1 CACGGGCGTGTTACCC-TCCTA
130765 CACGGGCGTGT
1 CACGGGCGTGT
130776 GCCCTGTTTT
Statistics
Matches: 24, Mismatches: 7, Indels: 2
0.73 0.21 0.06
Matches are distributed among these distances:
21 21 0.88
22 3 0.12
ACGTcount: A:0.17, C:0.34, G:0.25, T:0.25
Consensus pattern (21 bp):
CACGGGCGTGTTACCCTCCTA
Found at i:132426 original size:180 final size:180
Alignment explanation
Indices: 132143--132471 Score: 532
Period size: 180 Copynumber: 1.8 Consensus size: 180
132133 TCTGTTGATT
* *
132143 TTTCCAGAAACTAGACTCACATATATTCTTACCATAAAATTTTCAGAATTTTTGGCTTAGCCAAT
1 TTTCCAGAAACTAGACTAACATATATTCTTACCATAAAATTTTCAGAATTTTTAGCTTAGCCAAT
** **
132208 TAGTACAGTTTATTCATTAAATTTACCCCTATTTCACTGTCCAAAAGTTTTGACCTCTCTTAACT
66 TAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTGTCCAAAAGTTCCGACCTCTCTTAACT
*
132273 AAAAACTATTTTTCTCATGATACGAGACTCTAAATTAATAACTACTAATA
131 AAAAACTATTTATCTCATGATACGAGACTCTAAATTAATAACTACTAATA
* *
132323 TTTCCAGAAACTAGACTAACATATATTCTTACCATAAAATTTTTAGAATTTTTAGTTTAGCCAAT
1 TTTCCAGAAACTAGACTAACATATATTCTTACCATAAAATTTTCAGAATTTTTAGCTTAGCCAAT
* * * *
132388 TAGTACATTTTATTCATTAAAGATACCCCTATTTCACTGTCCAATAGTTCCGATCTCTCTTCACT
66 TAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTGTCCAAAAGTTCCGACCTCTCTTAACT
*
132453 AAAAATTATTTATCTCATG
131 AAAAACTATTTATCTCATG
132472 GTATAGATCT
Statistics
Matches: 135, Mismatches: 14, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
180 135 1.00
ACGTcount: A:0.34, C:0.20, G:0.08, T:0.39
Consensus pattern (180 bp):
TTTCCAGAAACTAGACTAACATATATTCTTACCATAAAATTTTCAGAATTTTTAGCTTAGCCAAT
TAGTACAGTTTATTCATTAAAGATACCCCTATTTCACTGTCCAAAAGTTCCGACCTCTCTTAACT
AAAAACTATTTATCTCATGATACGAGACTCTAAATTAATAACTACTAATA
Found at i:133118 original size:50 final size:49
Alignment explanation
Indices: 133038--133158 Score: 161
Period size: 50 Copynumber: 2.4 Consensus size: 49
133028 AAGCTCTCTG
* * *
133038 GTACGCATAGTAGCCTGCACTTAGTACTACACATGCGACCTATCAATCT
1 GTACACATAGTAGCCTGCACTTACTACTACACATGCGACCTAACAATCT
* *
133087 AGTACACATAGTAGCCTGCACTTACTACTACACATGTGACCTAACCATCT
1 -GTACACATAGTAGCCTGCACTTACTACTACACATGCGACCTAACAATCT
* *
133137 GATTCACGTAGTAGCCTGCACT
1 G-TACACATAGTAGCCTGCACT
133159 GGAACTCTAT
Statistics
Matches: 63, Mismatches: 7, Indels: 2
0.88 0.10 0.03
Matches are distributed among these distances:
49 1 0.02
50 62 0.98
ACGTcount: A:0.29, C:0.29, G:0.16, T:0.26
Consensus pattern (49 bp):
GTACACATAGTAGCCTGCACTTACTACTACACATGCGACCTAACAATCT
Found at i:133622 original size:17 final size:18
Alignment explanation
Indices: 133590--133625 Score: 56
Period size: 17 Copynumber: 2.1 Consensus size: 18
133580 ATGGGCCAGG
*
133590 ATGGGCCATGTGGGCCCA
1 ATGGGCCATATGGGCCCA
133608 ATGGGCC-TATGGGCCCA
1 ATGGGCCATATGGGCCCA
133625 A
1 A
133626 GTGGATAAAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 10 0.59
18 7 0.41
ACGTcount: A:0.19, C:0.28, G:0.36, T:0.17
Consensus pattern (18 bp):
ATGGGCCATATGGGCCCA
Found at i:133714 original size:27 final size:27
Alignment explanation
Indices: 133684--133764 Score: 99
Period size: 27 Copynumber: 3.0 Consensus size: 27
133674 AATCTCATAT
* * *
133684 CTGTAGGCTAGTACTACTGAAATACCC
1 CTGTAGGATAGAATTACTGAAATACCC
*
133711 CTGTAGGATAGAATTACTGAAATGCCC
1 CTGTAGGATAGAATTACTGAAATACCC
* * *
133738 TTGTAGGGTAGAATTATTGAAATACCC
1 CTGTAGGATAGAATTACTGAAATACCC
133765 ATGGTTTACA
Statistics
Matches: 46, Mismatches: 8, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
27 46 1.00
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (27 bp):
CTGTAGGATAGAATTACTGAAATACCC
Found at i:133797 original size:26 final size:27
Alignment explanation
Indices: 133749--133817 Score: 77
Period size: 26 Copynumber: 2.6 Consensus size: 27
133739 TGTAGGGTAG
* * *
133749 AATTATTGAAATACCCATGGTTTACAA
1 AATTACTGAAATACCCATAGTTTAAAA
*
133776 AATTACTG-AATACCCTTAGTTTAAAA
1 AATTACTGAAATACCCATAGTTTAAAA
**
133802 AATTACCAAAATACCC
1 AATTACTGAAATACCC
133818 TCGATTAGCA
Statistics
Matches: 35, Mismatches: 6, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
26 21 0.60
27 14 0.40
ACGTcount: A:0.43, C:0.19, G:0.07, T:0.30
Consensus pattern (27 bp):
AATTACTGAAATACCCATAGTTTAAAA
Found at i:133830 original size:27 final size:27
Alignment explanation
Indices: 133800--134057 Score: 191
Period size: 27 Copynumber: 9.5 Consensus size: 27
133790 CTTAGTTTAA
*
133800 AAAATTACCAAAATACCCTCGA-TTAGC
1 AAAATTACCAAAATACCCTCGACTT-GT
* **
133827 AAAATTACCAAAGTATCCCT-GGTTTGT
1 AAAATTACCAAAATA-CCCTCGACTTGT
* *
133854 AAAATTACCAAAATACCCTAGATTTGT
1 AAAATTACCAAAATACCCTCGACTTGT
** * * * *
133881 GGAATTACCGAAATACCCTTGACCTAT
1 AAAATTACCAAAATACCCTCGACTTGT
** *
133908 AAAATTACTGAAATACCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGACTTGT
* * *
133935 AAAATTACCGAAATGCCCTCGACCTGT
1 AAAATTACCAAAATACCCTCGACTTGT
* * * *
133962 AAAATTATCGAAACAACCTCGACTTGT
1 AAAATTACCAAAATACCCTCGACTTGT
* *
133989 AAAATTACCAAAATACCC-CTGATTTGGA
1 AAAATTACCAAAATACCCTC-GACTT-GT
* * *
134017 AAAATTACCGAAAA-ACCCTTGATTTGG
1 AAAATTACC-AAAATACCCTCGACTTGT
*
134044 AAAATTACAAAAAT
1 AAAATTACCAAAAT
134058 GCCCCTAATT
Statistics
Matches: 190, Mismatches: 33, Indels: 16
0.79 0.14 0.07
Matches are distributed among these distances:
26 9 0.05
27 152 0.80
28 25 0.13
29 4 0.02
ACGTcount: A:0.41, C:0.22, G:0.11, T:0.26
Consensus pattern (27 bp):
AAAATTACCAAAATACCCTCGACTTGT
Found at i:134068 original size:27 final size:27
Alignment explanation
Indices: 133989--134068 Score: 83
Period size: 28 Copynumber: 2.9 Consensus size: 27
133979 CTCGACTTGT
*
133989 AAAATTACCAAAATACCCCTGATTTGGA
1 AAAATTACAAAAAT-CCCCTGATTTGGA
*
134017 AAAATTACCGAAAAA-CCCTTGATTTGG-
1 AAAATTA-C-AAAAATCCCCTGATTTGGA
*
134044 AAAATTACAAAAATGCCCCTAATTT
1 AAAATTACAAAAAT-CCCCTGATTT
134069 ACAAATTTAT
Statistics
Matches: 44, Mismatches: 4, Indels: 9
0.77 0.07 0.16
Matches are distributed among these distances:
25 5 0.11
26 1 0.02
27 15 0.34
28 18 0.41
29 1 0.02
30 4 0.09
ACGTcount: A:0.44, C:0.20, G:0.10, T:0.26
Consensus pattern (27 bp):
AAAATTACAAAAATCCCCTGATTTGGA
Found at i:134128 original size:28 final size:26
Alignment explanation
Indices: 134070--134151 Score: 76
Period size: 27 Copynumber: 3.0 Consensus size: 26
134060 CCCTAATTTA
* *
134070 CAAATTTATAGAAATATCCTTGACTTT-
1 CAAAATTATAGAAATA-CCTTG-GTTTG
134097 CAAAAATTATAGAAATACCATTGGTTTG
1 C-AAAATTATAGAAATACC-TTGGTTTG
* *
134125 CAAAATTATCGAAATACCCTTAGTTTG
1 CAAAATTATAGAAATA-CCTTGGTTTG
134152 TATATTTACC
Statistics
Matches: 47, Mismatches: 4, Indels: 8
0.80 0.07 0.14
Matches are distributed among these distances:
27 27 0.57
28 20 0.43
ACGTcount: A:0.39, C:0.15, G:0.11, T:0.35
Consensus pattern (26 bp):
CAAAATTATAGAAATACCTTGGTTTG
Found at i:134138 original size:27 final size:27
Alignment explanation
Indices: 134099--134151 Score: 79
Period size: 27 Copynumber: 2.0 Consensus size: 27
134089 TTGACTTTCA
*
134099 AAAATTATAGAAATACCATTGGTTTGC
1 AAAATTATAGAAATACCATTAGTTTGC
* *
134126 AAAATTATCGAAATACCCTTAGTTTG
1 AAAATTATAGAAATACCATTAGTTTG
134152 TATATTTACC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.13, T:0.34
Consensus pattern (27 bp):
AAAATTATAGAAATACCATTAGTTTGC
Found at i:134458 original size:41 final size:41
Alignment explanation
Indices: 134413--134530 Score: 157
Period size: 41 Copynumber: 2.9 Consensus size: 41
134403 AGAAGAAATT
* *
134413 GAGGATTGCATGGTTGCTTGACGACCGTGGATCCACCGATC
1 GAGGATCGCATGGTTGCTTGAAGACCGTGGATCCACCGATC
* * *
134454 GAGGATCGCATGGTTG-TTTAATGACCGTGAATCCACCGATT
1 GAGGATCGCATGGTTGCTTGAA-GACCGTGGATCCACCGATC
* *
134495 AAGGATCGCATGGTTGCTTGAAGACTGTGGATCCAC
1 GAGGATCGCATGGTTGCTTGAAGACCGTGGATCCAC
134531 TGGTGGCTTT
Statistics
Matches: 66, Mismatches: 9, Indels: 4
0.84 0.11 0.05
Matches are distributed among these distances:
40 3 0.05
41 59 0.89
42 4 0.06
ACGTcount: A:0.23, C:0.21, G:0.30, T:0.26
Consensus pattern (41 bp):
GAGGATCGCATGGTTGCTTGAAGACCGTGGATCCACCGATC
Found at i:134715 original size:22 final size:22
Alignment explanation
Indices: 134690--134737 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
134680 TGGCTTTGCA
134690 CCAACCT-ACATATGGCTCTGTG
1 CCAACCTGA-ATATGGCTCTGTG
* *
134712 CCAACCTGATTATGGCTGTGTG
1 CCAACCTGAATATGGCTCTGTG
134734 CCAA
1 CCAA
134738 ACGTATTTGC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
22 22 0.96
23 1 0.04
ACGTcount: A:0.23, C:0.29, G:0.21, T:0.27
Consensus pattern (22 bp):
CCAACCTGAATATGGCTCTGTG
Found at i:137344 original size:27 final size:27
Alignment explanation
Indices: 137280--137336 Score: 78
Period size: 27 Copynumber: 2.1 Consensus size: 27
137270 GTAGGCTAGT
*
137280 ATTACTGAAATGCCCCTGTAGGATAGA
1 ATTACTGAAATGCCCCTGGAGGATAGA
* * *
137307 ATTACTGAAATGTCCTTGGAGGGTAGA
1 ATTACTGAAATGCCCCTGGAGGATAGA
137334 ATT
1 ATT
137337 GTTGAAATAC
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
27 26 1.00
ACGTcount: A:0.32, C:0.14, G:0.25, T:0.30
Consensus pattern (27 bp):
ATTACTGAAATGCCCCTGGAGGATAGA
Found at i:137378 original size:26 final size:26
Alignment explanation
Indices: 137342--137391 Score: 82
Period size: 26 Copynumber: 1.9 Consensus size: 26
137332 GAATTGTTGA
*
137342 AATACCATTGGTTTTCAAAATTACTG
1 AATACCATTGGTTTACAAAATTACTG
*
137368 AATACCCTTGGTTTACAAAATTAC
1 AATACCATTGGTTTACAAAATTAC
137392 CAAAATACCC
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 22 1.00
ACGTcount: A:0.36, C:0.18, G:0.10, T:0.36
Consensus pattern (26 bp):
AATACCATTGGTTTACAAAATTACTG
Found at i:137451 original size:27 final size:26
Alignment explanation
Indices: 137433--137616 Score: 124
Period size: 27 Copynumber: 6.9 Consensus size: 26
137423 ATGCCGCTGG
*
137433 TTTGTAAAATTATCGAAATACCCCTAA
1 TTTGTAAAATTATCGAAATA-CCCTGA
*
137460 TTTGT-GAATTATCGAAATACCCTCGA
1 TTTGTAAAATTATCGAAATACCCT-GA
**
137486 CCTGTAAAATTATCGAAATACCCTCGA
1 TTTGTAAAATTATCGAAATACCCT-GA
** * * *
137513 CCTGTGAAATTACCAAAATACCCTTGA
1 TTTGTAAAATTATCGAAATACCC-TGA
** * *
137540 CCTGTAAAATTACCGAAA-ACCCTCGG
1 TTTGTAAAATTATCGAAATACCCT-GA
* *
137566 CTTGTAAAATTA-CCAGAATACCCTTGA
1 TTTGTAAAATTATCGA-AATACCC-TGA
*
137593 TTTAG-AAAATTATTGAAATACCCT
1 TTT-GTAAAATTATCGAAATACCCT
137617 TAACTCAAAA
Statistics
Matches: 131, Mismatches: 17, Indels: 19
0.78 0.10 0.11
Matches are distributed among these distances:
25 7 0.05
26 36 0.27
27 84 0.64
28 4 0.03
ACGTcount: A:0.37, C:0.22, G:0.11, T:0.29
Consensus pattern (26 bp):
TTTGTAAAATTATCGAAATACCCTGA
Found at i:137497 original size:53 final size:55
Alignment explanation
Indices: 137435--137615 Score: 167
Period size: 53 Copynumber: 3.4 Consensus size: 55
137425 GCCGCTGGTT
** * *
137435 TGTAAAATTATCGAAATACCCCT-AATTTGTG-AATTATCGAAATACCCTCGACC
1 TGTAAAATTATCGAAATACCCCTCAACCTGTGAAATTACCAAAATACCCTCGACC
* *
137488 TGTAAAATTATCGAAATA-CCCTCGACCTGTGAAATTACCAAAATACCCTTGACC
1 TGTAAAATTATCGAAATACCCCTCAACCTGTGAAATTACCAAAATACCCTCGACC
* ** * * * * **
137542 TGTAAAATTACCGAAA-A-CCCTCGGCTTGTAAAATTACCAGAATACCCTTGATT
1 TGTAAAATTATCGAAATACCCCTCAACCTGTGAAATTACCAAAATACCCTCGACC
*
137595 TAG-AAAATTATTGAAATACCC
1 T-GTAAAATTATCGAAATACCC
137616 TTAACTCAAA
Statistics
Matches: 108, Mismatches: 15, Indels: 8
0.82 0.11 0.06
Matches are distributed among these distances:
52 4 0.04
53 66 0.61
54 36 0.33
55 2 0.02
ACGTcount: A:0.38, C:0.23, G:0.12, T:0.28
Consensus pattern (55 bp):
TGTAAAATTATCGAAATACCCCTCAACCTGTGAAATTACCAAAATACCCTCGACC
Found at i:137640 original size:54 final size:54
Alignment explanation
Indices: 137519--137726 Score: 163
Period size: 54 Copynumber: 3.9 Consensus size: 54
137509 TCGACCTGTG
* ** * *** **
137519 AAATTACCAAAATACCCTTGACCT-GTAAAATTACCGAAA-ACCCTCGGCTTGTA
1 AAATTACAAAAATACCCTTGATTTAG-AAAATTACTGAAATACCCTTAACTTCAA
* * *
137572 AAATTACCAGAATACCCTTGATTTAGAAAATTATTGAAATACCCTTAAC-TCAAA
1 AAATTACAAAAATACCCTTGATTTAGAAAATTACTGAAATACCCTTAACTTC-AA
* * * * **
137626 AAATTACAAAAATACCCCTAACTTACAAAATTACAAAAATACCCTTAACTTTCAA
1 AAATTACAAAAATACCCTTGATTTAGAAAATTACTGAAATACCCTTAAC-TTCAA
* * *
137681 AAATTACAGAAATACCATTGGTTT-GAAATATTACTGAAATACCCTT
1 AAATTACAAAAATACCCTTGATTTAGAAA-ATTACTGAAATACCCTT
137727 GGTTTGTAGA
Statistics
Matches: 121, Mismatches: 28, Indels: 10
0.76 0.18 0.06
Matches are distributed among these distances:
53 33 0.27
54 51 0.42
55 35 0.29
56 2 0.02
ACGTcount: A:0.44, C:0.21, G:0.07, T:0.28
Consensus pattern (54 bp):
AAATTACAAAAATACCCTTGATTTAGAAAATTACTGAAATACCCTTAACTTCAA
Found at i:137664 original size:28 final size:27
Alignment explanation
Indices: 137571--137696 Score: 126
Period size: 27 Copynumber: 4.6 Consensus size: 27
137561 CTCGGCTTGT
* * * * *
137571 AAAATTACCAGAATACCCTTGATTTAG
1 AAAATTACAAAAATACCCTTAACTTAC
*** * *
137598 AAAATTATTGAAATACCCTTAACTCAA
1 AAAATTACAAAAATACCCTTAACTTAC
*
137625 AAAATTACAAAAATACCCCTAACTTAC
1 AAAATTACAAAAATACCCTTAACTTAC
*
137652 AAAATTACAAAAATACCCTTAACTTTC
1 AAAATTACAAAAATACCCTTAACTTAC
*
137679 AAAAATTACAGAAATACC
1 -AAAATTACAAAAATACC
137697 ATTGGTTTGA
Statistics
Matches: 81, Mismatches: 17, Indels: 1
0.82 0.17 0.01
Matches are distributed among these distances:
27 65 0.80
28 16 0.20
ACGTcount: A:0.49, C:0.21, G:0.04, T:0.26
Consensus pattern (27 bp):
AAAATTACAAAAATACCCTTAACTTAC
Found at i:138037 original size:41 final size:41
Alignment explanation
Indices: 137992--138114 Score: 174
Period size: 41 Copynumber: 3.0 Consensus size: 41
137982 GGAGGAAGAA
137992 ATTGAGGATTGCATGGTTGCTTGACGATCGTGGATCCACCG
1 ATTGAGGATTGCATGGTTGCTTGACGATCGTGGATCCACCG
** * *
138033 ATTGAGGATCACATGGTTACTTGACGATCGTGGATCCACCA
1 ATTGAGGATTGCATGGTTGCTTGACGATCGTGGATCCACCG
* * * *
138074 ATTAAGGATTGTATGGTTGCTTAACGATCATGGATCCACCG
1 ATTGAGGATTGCATGGTTGCTTGACGATCGTGGATCCACCG
138115 GTGGCTTTTA
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
41 70 1.00
ACGTcount: A:0.24, C:0.20, G:0.27, T:0.29
Consensus pattern (41 bp):
ATTGAGGATTGCATGGTTGCTTGACGATCGTGGATCCACCG
Found at i:138308 original size:22 final size:22
Alignment explanation
Indices: 138256--138320 Score: 78
Period size: 22 Copynumber: 3.0 Consensus size: 22
138246 GCCAATTATT
*
138256 CTGATTATGGCTTTGCGCCAAC
1 CTGATTATGGCTTTGTGCCAAC
* *
138278 CT-ACATATGGCTTTGTACCAAC
1 CTGA-TTATGGCTTTGTGCCAAC
*
138300 CTGATTATGGCTGTGTGCCAA
1 CTGATTATGGCTTTGTGCCAA
138321 ACGTATTTGC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
21 1 0.03
22 33 0.94
23 1 0.03
ACGTcount: A:0.22, C:0.25, G:0.22, T:0.32
Consensus pattern (22 bp):
CTGATTATGGCTTTGTGCCAAC
Found at i:138747 original size:27 final size:27
Alignment explanation
Indices: 138689--138747 Score: 64
Period size: 27 Copynumber: 2.2 Consensus size: 27
138679 TTTAGGCTAA
* * *
138689 GCCCAATTGATTTTGTTATGGACTGTG
1 GCCCAAATGATATTGTAATGGACTGTG
* * *
138716 ACCCAAATGATATTGTAATGGGCTTTG
1 GCCCAAATGATATTGTAATGGACTGTG
138743 GCCCA
1 GCCCA
138748 CGTATGCTCT
Statistics
Matches: 25, Mismatches: 7, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.24, C:0.19, G:0.24, T:0.34
Consensus pattern (27 bp):
GCCCAAATGATATTGTAATGGACTGTG
Found at i:140486 original size:17 final size:18
Alignment explanation
Indices: 140460--140493 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 18
140450 ATTCTTACAT
*
140460 TTATTGAAACCT-TCCAC
1 TTATTCAAACCTATCCAC
140477 TTATTCAAACCTATCCA
1 TTATTCAAACCTATCCA
140494 ATCACTTCAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.32, C:0.29, G:0.03, T:0.35
Consensus pattern (18 bp):
TTATTCAAACCTATCCAC
Found at i:141815 original size:18 final size:18
Alignment explanation
Indices: 141780--141842 Score: 65
Period size: 18 Copynumber: 3.4 Consensus size: 18
141770 AAAAGAATGA
* *
141780 GAAAAAGAAAAACAAAATC
1 GAAAAAGAAAAA-GAAATT
141799 GAAAAAGAAAAAGAAATT
1 GAAAAAGAAAAAGAAATT
**
141817 GATCAAG-AAAAGAAAATT
1 GAAAAAGAAAAAG-AAATT
141835 GAAAAAGA
1 GAAAAAGA
141843 GAGTGAGTAT
Statistics
Matches: 36, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 5 0.14
18 19 0.53
19 12 0.33
ACGTcount: A:0.70, C:0.05, G:0.16, T:0.10
Consensus pattern (18 bp):
GAAAAAGAAAAAGAAATT
Found at i:143228 original size:20 final size:20
Alignment explanation
Indices: 143205--143271 Score: 80
Period size: 20 Copynumber: 3.3 Consensus size: 20
143195 AGCTCTGTGT
143205 AGCTCAACTCAGCTTATTTG
1 AGCTCAACTCAGCTTATTTG
** *
143225 AGCTCATTTCAGCTTGTTTG
1 AGCTCAACTCAGCTTATTTG
* *
143245 AGCTCAACCCAGCTTACTTTT
1 AGCTCAACTCAGCTTA-TTTG
143266 AGCTCA
1 AGCTCA
143272 TTCTTTATTT
Statistics
Matches: 38, Mismatches: 8, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
20 29 0.76
21 9 0.24
ACGTcount: A:0.22, C:0.27, G:0.15, T:0.36
Consensus pattern (20 bp):
AGCTCAACTCAGCTTATTTG
Found at i:144601 original size:414 final size:414
Alignment explanation
Indices: 143831--144659 Score: 1532
Period size: 414 Copynumber: 2.0 Consensus size: 414
143821 GGCTATTTTA
143831 TGTACATGTATTTGAATATTCATGGACCGTAATTAAGGAAGAACATGCATATGGACGTTTCATGC
1 TGTACATGTATTTGAATATTCATGGACCGTAATTAAGGAAGAACATGCATATGGACGTTTCATGC
143896 ATGTATCATGCATATCCAAGTTGTCCATTCAAGTATTCAAGGTACATTAAAGCCTCATTCGGCCA
66 ATGTATCATGCATATCCAAGTTGTCCATTCAAGTATTCAAGGTACATTAAAGCCTCATTCGGCCA
143961 AGGGAGATGTTGGAGTATTAGAGGGCTGCACATTCATGAACTATGGCTTTTCTTCTAGGCTAAGT
131 AGGGAGATGTTGGAGTATTAGAGGGCTGCACATTCATGAACTATGGCTTTTCTTCTAGGCTAAGT
*
144026 ATGAATGAATGCATCAGGTGAAGCAACATGATGGTTCGGCCAATTCATTCACCATCTCTAAGCAT
196 ATGAATGAATGCACCAGGTGAAGCAACATGATGGTTCGGCCAATTCATTCACCATCTCTAAGCAT
* * *
144091 GAACCGAATTTTAATGCTTTTGTGTGAATATGTTAAATACAAAAGTGAACAGAATTTAAGTAAGT
261 AAACCAAATTTTAATGCTTTTGTGTGAACATGTTAAATACAAAAGTGAACAGAATTTAAGTAAGT
**
144156 GTGAACATCATAGATGCTGAATATCAATAGGCATCTTAGGCTTATAAATAGTTTGTTTATTTCTT
326 GTGAACATCATAGATGCCAAATATCAATAGGCATCTTAGGCTTATAAATAGTTTGTTTATTTCTT
*
144221 TGTAAAAAGGCTTTTGCCAATTTG
391 TGTAAAAAGACTTTTGCCAATTTG
144245 TGTACATGTATTTGAATATTCATGGACCGTAATTAAGGAAGAACATGCATATGGACGTTTCATGC
1 TGTACATGTATTTGAATATTCATGGACCGTAATTAAGGAAGAACATGCATATGGACGTTTCATGC
*
144310 ATGTATCATGCATATCCAAGTTGTCCATTCAAGTATTCAAGGTACATTAAAGCCTCATTTGGCCA
66 ATGTATCATGCATATCCAAGTTGTCCATTCAAGTATTCAAGGTACATTAAAGCCTCATTCGGCCA
*
144375 GGGGAGATGTTGGAGTATTAGAGGGCTGCACATTCATGAACTATGGCTTTTCTTCTAGGCTAAGT
131 AGGGAGATGTTGGAGTATTAGAGGGCTGCACATTCATGAACTATGGCTTTTCTTCTAGGCTAAGT
* *
144440 ATGAATGAATGCACCAGGTGAAGCAACATGATGGTTTGGCCAATTTATTCACCATCTCTAAGCAT
196 ATGAATGAATGCACCAGGTGAAGCAACATGATGGTTCGGCCAATTCATTCACCATCTCTAAGCAT
* * *
144505 AAACCAAATTTTAATGTTTTTGTGTGAACATGTTAAATACAAATGTGAACAGAATTTAAGTTAGT
261 AAACCAAATTTTAATGCTTTTGTGTGAACATGTTAAATACAAAAGTGAACAGAATTTAAGTAAGT
144570 GTGAACATCATAGATGCCAAATATCAATAGGCATCTTAGGCTTATAAATAGTTTGTTTATTTCTT
326 GTGAACATCATAGATGCCAAATATCAATAGGCATCTTAGGCTTATAAATAGTTTGTTTATTTCTT
144635 TGTAAAAAGACTTTTGCCAATTTG
391 TGTAAAAAGACTTTTGCCAATTTG
144659 T
1 T
144660 TAATGAACAT
Statistics
Matches: 401, Mismatches: 14, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
414 401 1.00
ACGTcount: A:0.32, C:0.15, G:0.20, T:0.33
Consensus pattern (414 bp):
TGTACATGTATTTGAATATTCATGGACCGTAATTAAGGAAGAACATGCATATGGACGTTTCATGC
ATGTATCATGCATATCCAAGTTGTCCATTCAAGTATTCAAGGTACATTAAAGCCTCATTCGGCCA
AGGGAGATGTTGGAGTATTAGAGGGCTGCACATTCATGAACTATGGCTTTTCTTCTAGGCTAAGT
ATGAATGAATGCACCAGGTGAAGCAACATGATGGTTCGGCCAATTCATTCACCATCTCTAAGCAT
AAACCAAATTTTAATGCTTTTGTGTGAACATGTTAAATACAAAAGTGAACAGAATTTAAGTAAGT
GTGAACATCATAGATGCCAAATATCAATAGGCATCTTAGGCTTATAAATAGTTTGTTTATTTCTT
TGTAAAAAGACTTTTGCCAATTTG
Found at i:145006 original size:17 final size:18
Alignment explanation
Indices: 144984--145020 Score: 58
Period size: 17 Copynumber: 2.1 Consensus size: 18
144974 ACTATTCTTA
*
144984 CACTTATTGAAACCT-TC
1 CACTTATTCAAACCTATC
145001 CACTTATTCAAACCTATC
1 CACTTATTCAAACCTATC
145019 CA
1 CA
145021 ATCACTTCAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
17 14 0.78
18 4 0.22
ACGTcount: A:0.32, C:0.32, G:0.03, T:0.32
Consensus pattern (18 bp):
CACTTATTCAAACCTATC
Found at i:148712 original size:37 final size:37
Alignment explanation
Indices: 148662--148740 Score: 122
Period size: 37 Copynumber: 2.1 Consensus size: 37
148652 TTATTACGAA
* * *
148662 GTCTTACCCGGACATAATCTCCACACGAAGTTATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
*
148699 GTCTTACCCGGACAAAATCCCCACACGTAGTCATCGG
1 GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
148736 GTCTT
1 GTCTT
148741 TAGAGCTCGG
Statistics
Matches: 38, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
37 38 1.00
ACGTcount: A:0.25, C:0.32, G:0.19, T:0.24
Consensus pattern (37 bp):
GTCTTACCCGGACAAAATCCCCACACGAAGTCATCGG
Found at i:148963 original size:47 final size:47
Alignment explanation
Indices: 148910--149339 Score: 770
Period size: 47 Copynumber: 9.1 Consensus size: 47
148900 CTCGGCCCTG
148910 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
148957 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
149004 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
149051 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
149098 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
149145 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
149192 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
* * *
149239 ACTTTCACATTCATCACATCGGCTATTAGGCCTTATTACATATATACATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTA-T-CACACAT--ATAC
* * *
149290 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATAC
1 ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
149337 ACT
1 ACT
149340 CTCTCGGCTG
Statistics
Matches: 374, Mismatches: 5, Indels: 8
0.97 0.01 0.02
Matches are distributed among these distances:
47 323 0.86
48 1 0.00
49 11 0.03
50 1 0.00
51 38 0.10
ACGTcount: A:0.28, C:0.29, G:0.08, T:0.34
Consensus pattern (47 bp):
ACTTTCACATTCATCACATCGGCTATTTGGCCTTATCACACATATAC
Found at i:152985 original size:40 final size:40
Alignment explanation
Indices: 152874--152990 Score: 162
Period size: 40 Copynumber: 2.9 Consensus size: 40
152864 CGAATACACG
* * ** * * *
152874 TCACCAGCATGATTGCTCTTCGGGGTTTAGCACAGATATA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
*
152914 TCACTAGCACGAATGCTCTTCGGGACTTAGCCCGGATACA
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
152954 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
1 TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGAT
152991 TTAGTAACTC
Statistics
Matches: 68, Mismatches: 9, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.24, C:0.26, G:0.23, T:0.26
Consensus pattern (40 bp):
TCACTAGCATGAATGCTCTTCGGGACTTAGCCCGGATACA
Found at i:153015 original size:40 final size:41
Alignment explanation
Indices: 152887--153069 Score: 180
Period size: 40 Copynumber: 4.6 Consensus size: 41
152877 CCAGCATGAT
** * * *
152887 TGCTCTTCGGGGTTTAGCACAGATATA-TCACTAGCACGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* **
152927 TGCTCTTCGGGACTTAGCCCGGATACA-TCACTAGCATGAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* * *
152967 TGCTCTTCGGGACTTAGCCCGGATTTAGTAACTCGCACCAA
1 TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
* *
153008 TGC-CTTC-GGATCTTAGTCCGGATATGGTCACTTAGCA-CAA
1 TGCTCTTCGGGA-CTTAGCCCGGATATAGTCAC-TAGCACCAA
*
153048 AGC-CTTCGGGACTTAGCCCGGA
1 TGCTCTTCGGGACTTAGCCCGGA
153070 CATCATTCAA
Statistics
Matches: 120, Mismatches: 19, Indels: 8
0.82 0.13 0.05
Matches are distributed among these distances:
39 3 0.03
40 98 0.82
41 19 0.16
ACGTcount: A:0.23, C:0.27, G:0.23, T:0.26
Consensus pattern (41 bp):
TGCTCTTCGGGACTTAGCCCGGATATAGTCACTAGCACCAA
Found at i:153414 original size:29 final size:29
Alignment explanation
Indices: 153375--153453 Score: 106
Period size: 29 Copynumber: 2.7 Consensus size: 29
153365 CTTAATAATC
*
153375 AACCACGCACACTTAGTGCCATGTACTTT-A
1 AACC-CGCACACTTAGTGCCATGCA-TTTCA
*
153405 AACTCGCACACTTAGTGCCATGCATTTCA
1 AACCCGCACACTTAGTGCCATGCATTTCA
*
153434 AGCCCGCACACTTAGTGCCA
1 AACCCGCACACTTAGTGCCA
153454 ATCTCACAAC
Statistics
Matches: 44, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
28 3 0.07
29 38 0.86
30 3 0.07
ACGTcount: A:0.28, C:0.33, G:0.15, T:0.24
Consensus pattern (29 bp):
AACCCGCACACTTAGTGCCATGCATTTCA
Found at i:155276 original size:47 final size:47
Alignment explanation
Indices: 155207--155412 Score: 322
Period size: 47 Copynumber: 4.3 Consensus size: 47
155197 NNNNNNNNNN
* *
155207 ATATGTACACTTTCACATTCATCACATCGGCCATTAGGCCTTACCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
* * *
155254 ATATGTACACTTTCACATTCATCACATCGGCTATTAGGCCTTATTAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
155301 ATATATACATATACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATAC----ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
*
155352 ATATATACTCTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
1 ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
155399 ATATATACACTTTC
1 ATATATACACTTTC
155413 TTGGCTGAAT
Statistics
Matches: 147, Mismatches: 8, Indels: 8
0.90 0.05 0.05
Matches are distributed among these distances:
47 102 0.69
51 45 0.31
ACGTcount: A:0.29, C:0.28, G:0.09, T:0.34
Consensus pattern (47 bp):
ATATATACACTTTCACATTCATCACATCGGCCATTAGGCCTTATCAC
Found at i:155388 original size:98 final size:98
Alignment explanation
Indices: 155215--155407 Score: 341
Period size: 98 Copynumber: 2.0 Consensus size: 98
155205 NNATATGTAC
*
155215 ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATGTACACTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACA
* *
155280 TCGGCTATTAGGCCTTATTACATATATACATAT
66 TCGGCCATTAGGCCTTATCACATATATACATAT
* *
155313 ACTTTCACATTCATCACATCGGCCATTAGGCCTTATCACATATATACTCTTTCACATTCATCACA
1 ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACA
155378 TCGGCCATTAGGCCTTATCACATATATACA
66 TCGGCCATTAGGCCTTATCACATATATACA
155408 CTTTCTTGGC
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
98 90 1.00
ACGTcount: A:0.30, C:0.28, G:0.09, T:0.33
Consensus pattern (98 bp):
ACTTTCACATTCATCACATCGGCCATTAGGCCTTACCACATATATACACTTTCACATTCATCACA
TCGGCCATTAGGCCTTATCACATATATACATAT
Found at i:157942 original size:99 final size:99
Alignment explanation
Indices: 157771--157964 Score: 343
Period size: 99 Copynumber: 2.0 Consensus size: 99
157761 AGTAAAAGAA
* **
157771 CTTAAATTATGATGTGATTAGATCATGTTTTGAGCAAATTAAAATCATGCTCTTTGTGTGGCTAT
1 CTTAAATTATGATGTGATTAGATCATGTTTTAAGCAAACCAAAATCATGCTCTTTGTGTGGCTAT
*
157836 TGAGCCGAATTTGCAAGAATGATAAATGTCAGAG
66 TGAGCCGAAATTGCAAGAATGATAAATGTCAGAG
*
157870 CTTAAATTATGATTTGATTAGATCATGTTTTAAGCAAACCAAAATCATGCTCTTTGTGTGGCTAT
1 CTTAAATTATGATGTGATTAGATCATGTTTTAAGCAAACCAAAATCATGCTCTTTGTGTGGCTAT
157935 TGAGCCGAAATTGCAAGAATGATAAATGTC
66 TGAGCCGAAATTGCAAGAATGATAAATGTC
157965 TTGTGTTTGA
Statistics
Matches: 90, Mismatches: 5, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
99 90 1.00
ACGTcount: A:0.33, C:0.12, G:0.20, T:0.35
Consensus pattern (99 bp):
CTTAAATTATGATGTGATTAGATCATGTTTTAAGCAAACCAAAATCATGCTCTTTGTGTGGCTAT
TGAGCCGAAATTGCAAGAATGATAAATGTCAGAG
Found at i:158182 original size:79 final size:81
Alignment explanation
Indices: 158046--158230 Score: 227
Period size: 79 Copynumber: 2.3 Consensus size: 81
158036 TTGAATGATG
* *
158046 TCCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATATCCGGACTAAGATCCGAAGGCATT
1 TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
158110 TGTGCGAGATACTA-A
66 TGTGCGAGATACTATA
* * * **
158125 TTCCGGGCTAAG-CCCGAAGGCATTTGTGC-GAGTTACTAAATCCGGGTTAAG-TCCCGAAGGCA
1 -TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGAT-CCGAAGGCA
*
158187 ATTGTGCGAGTTACTATA
64 ATTGTGCGAGATACTATA
* *
158205 ACCGGGCTATGTCCCGAAGGCATTTG
1 TCCGGGCTAAGTCCCGAAGGCATTTG
158231 AACGAGTAGC
Statistics
Matches: 91, Mismatches: 10, Indels: 8
0.83 0.09 0.07
Matches are distributed among these distances:
78 1 0.01
79 57 0.63
80 33 0.36
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.25
Consensus pattern (81 bp):
TCCGGGCTAAGTCCCGAAGGCATTTGTGCTAAGTGACCAAATCCGGACTAAGATCCGAAGGCAAT
TGTGCGAGATACTATA
Found at i:158244 original size:40 final size:40
Alignment explanation
Indices: 158047--158230 Score: 207
Period size: 40 Copynumber: 4.6 Consensus size: 40
158037 TGAATGATGT
* * * *
158047 CCGGGCTAAGTCCCGAAGGC-TTTGTGCTAAGTGACCATAT
1 CCGGGCTAAGTCCCGAAGGCATTTGTGC-GAGTTACTATAA
* * *
158087 CCGGACTAAGAT-CCGAAGGCATTTGTGCGAGATACTA-ATT
1 CCGGGCTAAG-TCCCGAAGGCATTTGTGCGAGTTACTATA-A
158127 CCGGGCTAAG-CCCGAAGGCATTTGTGCGAGTTACTA-AA
1 CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
* *
158165 TCCGGGTTAAGTCCCGAAGGCAATTGTGCGAGTTACTATAA
1 -CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
*
158206 CCGGGCTATGTCCCGAAGGCATTTG
1 CCGGGCTAAGTCCCGAAGGCATTTG
158231 AACGAGTAGC
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
39 35 0.28
40 79 0.64
41 10 0.08
ACGTcount: A:0.25, C:0.23, G:0.28, T:0.24
Consensus pattern (40 bp):
CCGGGCTAAGTCCCGAAGGCATTTGTGCGAGTTACTATAA
Found at i:158252 original size:79 final size:79
Alignment explanation
Indices: 158099--158263 Score: 201
Period size: 79 Copynumber: 2.1 Consensus size: 79
158089 GGACTAAGAT
* * **
158099 CCGAAGGCATTTGTGCGAGATACTAATTCCGGGCTAAGCCCGAAGGCATTTGTGCGAGTTACTAA
1 CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
*
158164 ATCCGGGTTAAGTC
66 ATCCGGGTTAAATC
* *
158178 CCGAAGGCAATTGTGCGAGTTACT-ATAACCGGGCTATGTCCCGAAGGCATTTGAACGAG-TAGC
1 CCGAAGGCAATTGTGCGAGATACTAAT-ACCGGGCTAAG-CCCGAAGGCATTTGAACGAGTTA-C
* *
158241 TATATCC-GGTTAAATT
63 TAAATCCGGGTTAAATC
158257 CCGAAGG
1 CCGAAGG
158264 TACGTGATTT
Statistics
Matches: 74, Mismatches: 9, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
78 2 0.03
79 47 0.64
80 25 0.34
ACGTcount: A:0.27, C:0.21, G:0.27, T:0.25
Consensus pattern (79 bp):
CCGAAGGCAATTGTGCGAGATACTAATACCGGGCTAAGCCCGAAGGCATTTGAACGAGTTACTAA
ATCCGGGTTAAATC
Found at i:173826 original size:47 final size:47
Alignment explanation
Indices: 173188--173814 Score: 954
Period size: 47 Copynumber: 13.4 Consensus size: 47
173178 TAATTGAATA
* *
173188 AATGTGAA-AGTGTATATGTGTGAATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACA-TGTGTATGTGTG-ATAAGGCCGAATGGCCAATGTGATG
** * *
173236 AATGTGAACATGCATATATGAGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
173283 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
173330 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
173377 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
173424 AAAGTGAACACGTATATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* ** * * *
173471 AAAGTGAACATGCATATATGAGATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
173518 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* *
173565 AAAGTGAACATGTGTATGTGTGATAGGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
173612 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
173659 AAAGTGAACATGTATATGTGTGATAAAGCCGAATGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * *
173706 AAAGTGAACAGGTGTATGTGTGATAAGGCCGAGTGGCCAATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
* * * *
173753 AATGTGAGCATGTGTATGTGAGATAAGGCCTAATGGCCGATGTGATG
1 AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
173800 AATGTGAA-A-GTGTAT
1 AATGTGAACATGTGTAT
173815 AAATGTGATA
Statistics
Matches: 533, Mismatches: 45, Indels: 5
0.91 0.08 0.01
Matches are distributed among these distances:
45 6 0.01
46 1 0.00
47 508 0.95
48 17 0.03
49 1 0.00
ACGTcount: A:0.32, C:0.11, G:0.32, T:0.26
Consensus pattern (47 bp):
AATGTGAACATGTGTATGTGTGATAAGGCCGAATGGCCAATGTGATG
Found at i:174001 original size:37 final size:37
Alignment explanation
Indices: 173945--174024 Score: 108
Period size: 37 Copynumber: 2.2 Consensus size: 37
173935 CCGGGCTATA
* * *
173945 AAGACCCGATGACTGCGTGTGG-GAATTTTGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAG-ATTATGTCCGGGT
*
173982 AAGACTCGATAACTTCGTGTGGAGATTATGTCCGGGT
1 AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
174019 AAGACT
1 AAGACT
174025 TCGTAATAAG
Statistics
Matches: 38, Mismatches: 4, Indels: 2
0.86 0.09 0.05
Matches are distributed among these distances:
37 37 0.97
38 1 0.03
ACGTcount: A:0.24, C:0.17, G:0.31, T:0.28
Consensus pattern (37 bp):
AAGACTCGATAACTGCGTGTGGAGATTATGTCCGGGT
Found at i:178027 original size:12 final size:12
Alignment explanation
Indices: 178010--178058 Score: 50
Period size: 12 Copynumber: 4.3 Consensus size: 12
178000 AATTAGAATG
* *
178010 TAAAAACTAAAC
1 TAAAAACAAAAA
178022 TAAAAACAAAAA
1 TAAAAACAAAAA
178034 T-AAAAC-AAAA
1 TAAAAACAAAAA
*
178044 T-AAAATAAAAA
1 TAAAAACAAAAA
178055 TAAA
1 TAAA
178059 TTAATAAATT
Statistics
Matches: 32, Mismatches: 3, Indels: 4
0.82 0.08 0.10
Matches are distributed among these distances:
10 9 0.28
11 10 0.31
12 13 0.41
ACGTcount: A:0.78, C:0.08, G:0.00, T:0.14
Consensus pattern (12 bp):
TAAAAACAAAAA
Found at i:178038 original size:11 final size:11
Alignment explanation
Indices: 178024--178058 Score: 54
Period size: 11 Copynumber: 3.3 Consensus size: 11
178014 AACTAAACTA
178024 AAAACAAAAAT
1 AAAACAAAAAT
178035 AAAAC-AAAAT
1 AAAACAAAAAT
*
178045 AAAATAAAAAT
1 AAAACAAAAAT
178056 AAA
1 AAA
178059 TTAATAAATT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
10 9 0.41
11 13 0.59
ACGTcount: A:0.83, C:0.06, G:0.00, T:0.11
Consensus pattern (11 bp):
AAAACAAAAAT
Found at i:178059 original size:10 final size:10
Alignment explanation
Indices: 178029--178080 Score: 52
Period size: 10 Copynumber: 4.9 Consensus size: 10
178019 AACTAAAAAC
178029 AAAAATAAA-
1 AAAAATAAAT
178038 ACAAAATAAAAT
1 A-AAAAT-AAAT
178050 AAAAATAAATT
1 AAAAATAAA-T
*
178061 AATAAATTAAT
1 AA-AAATAAAT
178072 AAAAATAAA
1 AAAAATAAA
178081 GCGTTTCTAA
Statistics
Matches: 36, Mismatches: 2, Indels: 9
0.77 0.04 0.19
Matches are distributed among these distances:
9 1 0.03
10 14 0.39
11 14 0.39
12 7 0.19
ACGTcount: A:0.77, C:0.02, G:0.00, T:0.21
Consensus pattern (10 bp):
AAAAATAAAT
Found at i:183788 original size:23 final size:22
Alignment explanation
Indices: 183716--183803 Score: 74
Period size: 21 Copynumber: 4.1 Consensus size: 22
183706 TACCTGATCA
* *
183716 GAATATGACACATAA-GTGCCT
1 GAATACGACACACAAGGTGCCT
* *
183737 GAA-ACGACACACGAGATGCCT
1 GAATACGACACACAAGGTGCCT
* *
183758 -ACTGCGACACACAAGGTGCCT
1 GAATACGACACACAAGGTGCCT
* *
183779 GAAATACGACACATAAAGTGCCT
1 G-AATACGACACACAAGGTGCCT
183802 GA
1 GA
183804 TCAGTAAAGC
Statistics
Matches: 51, Mismatches: 12, Indels: 7
0.73 0.17 0.10
Matches are distributed among these distances:
20 9 0.18
21 23 0.45
22 1 0.02
23 18 0.35
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.16
Consensus pattern (22 bp):
GAATACGACACACAAGGTGCCT
Found at i:184020 original size:23 final size:23
Alignment explanation
Indices: 183994--184056 Score: 117
Period size: 23 Copynumber: 2.7 Consensus size: 23
183984 AAATGTCCAA
183994 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
*
184017 CCAAAACGCACCAGTATAATCCT
1 CCAAAACACACCAGTATAATCCT
184040 CCAAAACACACCAGTAT
1 CCAAAACACACCAGTAT
184057 CATATAATCC
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.43, C:0.35, G:0.06, T:0.16
Consensus pattern (23 bp):
CCAAAACACACCAGTATAATCCT
Found at i:184086 original size:23 final size:23
Alignment explanation
Indices: 183994--184114 Score: 98
Period size: 23 Copynumber: 4.8 Consensus size: 23
183984 AAATGTCCAA
*
183994 CCAAAACACACCAGTATAATCCT
1 CCAAAACACACCAGAATAATCCT
* *
184017 CCAAAACGCACCAGTATAATCCT
1 CCAAAACACACCAGAATAATCCT
184040 CCAAAACACACCAGTATCATATAATCCT
1 CCAAAACACACCAG----A-ATAATCCT
* *
184068 CCCAAACACACTAGAATAATATAATCCAT
1 CCAAAACACACCAG----A-ATAATCC-T
184097 CCAAAACACACCAGAATA
1 CCAAAACACACCAGAATA
184115 GCACAAAGTG
Statistics
Matches: 83, Mismatches: 9, Indels: 11
0.81 0.09 0.11
Matches are distributed among these distances:
23 35 0.42
24 3 0.04
25 1 0.01
28 31 0.37
29 13 0.16
ACGTcount: A:0.45, C:0.32, G:0.05, T:0.17
Consensus pattern (23 bp):
CCAAAACACACCAGAATAATCCT
Found at i:184113 original size:29 final size:28
Alignment explanation
Indices: 184008--184114 Score: 125
Period size: 28 Copynumber: 4.0 Consensus size: 28
183998 AACACACCAG
*
184008 TATAATCCTCCAAAACGCACCAG-----
1 TATAATCCTCCAAAACACACCAGAATAA
* *
184031 TATAATCCTCCAAAACACACCAGTATCA
1 TATAATCCTCCAAAACACACCAGAATAA
* *
184059 TATAATCCTCCCAAACACACTAGAATAA
1 TATAATCCTCCAAAACACACCAGAATAA
184087 TATAATCCATCCAAAACACACCAGAATA
1 TATAATCC-TCCAAAACACACCAGAATA
184115 GCACAAAGTG
Statistics
Matches: 71, Mismatches: 7, Indels: 6
0.85 0.08 0.07
Matches are distributed among these distances:
23 22 0.31
28 32 0.45
29 17 0.24
ACGTcount: A:0.45, C:0.31, G:0.05, T:0.20
Consensus pattern (28 bp):
TATAATCCTCCAAAACACACCAGAATAA
Found at i:186395 original size:24 final size:24
Alignment explanation
Indices: 186368--186416 Score: 98
Period size: 24 Copynumber: 2.0 Consensus size: 24
186358 ATATATATAG
186368 TACATTTCACTATTTCAAAATTTT
1 TACATTTCACTATTTCAAAATTTT
186392 TACATTTCACTATTTCAAAATTTT
1 TACATTTCACTATTTCAAAATTTT
186416 T
1 T
186417 CCTAACTTCA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 25 1.00
ACGTcount: A:0.33, C:0.16, G:0.00, T:0.51
Consensus pattern (24 bp):
TACATTTCACTATTTCAAAATTTT
Found at i:188095 original size:7 final size:7
Alignment explanation
Indices: 188083--188136 Score: 51
Period size: 7 Copynumber: 7.9 Consensus size: 7
188073 ACTTCGAATC
188083 TTAAGGT
1 TTAAGGT
188090 TTAAGGT
1 TTAAGGT
*
188097 TT-GGGAT
1 TTAAGG-T
188104 TTAAGGT
1 TTAAGGT
188111 TT-AGGAT
1 TTAAGG-T
*
188118 TTGA-GT
1 TTAAGGT
188124 TTAAGGT
1 TTAAGGT
188131 TTAAGG
1 TTAAGG
188137 GTTTGTGGTT
Statistics
Matches: 39, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
6 9 0.23
7 27 0.69
8 3 0.08
ACGTcount: A:0.26, C:0.00, G:0.31, T:0.43
Consensus pattern (7 bp):
TTAAGGT
Found at i:188109 original size:21 final size:20
Alignment explanation
Indices: 188083--188141 Score: 75
Period size: 21 Copynumber: 2.9 Consensus size: 20
188073 ACTTCGAATC
*
188083 TTAAGGTTTAAGGTTTGGGAT
1 TTAAGGTTTAAGGTTTGAG-T
188104 TTAAGGTTT-AGGATTTGAGT
1 TTAAGGTTTAAGG-TTTGAGT
188124 TTAAGGTTTAAGGGTTTG
1 TTAAGGTTTAA-GGTTTG
188142 TGGTTATGGT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
20 13 0.38
21 19 0.56
22 2 0.06
ACGTcount: A:0.24, C:0.00, G:0.32, T:0.44
Consensus pattern (20 bp):
TTAAGGTTTAAGGTTTGAGT
Found at i:188128 original size:20 final size:20
Alignment explanation
Indices: 188083--188133 Score: 68
Period size: 20 Copynumber: 2.5 Consensus size: 20
188073 ACTTCGAATC
*
188083 TTAAGGTTTAAGGTTTGGGAT
1 TTAAGGTTT-AGGTTTGAGAT
188104 TTAAGGTTTAGGATTTGAG-T
1 TTAAGGTTTAGG-TTTGAGAT
188124 TTAAGGTTTA
1 TTAAGGTTTA
188134 AGGGTTTGTG
Statistics
Matches: 28, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
20 14 0.50
21 14 0.50
ACGTcount: A:0.25, C:0.00, G:0.29, T:0.45
Consensus pattern (20 bp):
TTAAGGTTTAGGTTTGAGAT
Found at i:188239 original size:7 final size:7
Alignment explanation
Indices: 188223--188265 Score: 50
Period size: 7 Copynumber: 6.1 Consensus size: 7
188213 AAGTTTGTGC
*
188223 TTAGGAT
1 TTAGGGT
188230 TTAGGGT
1 TTAGGGT
*
188237 TTAGTGT
1 TTAGGGT
*
188244 TTATGGT
1 TTAGGGT
*
188251 TTAAGGT
1 TTAGGGT
188258 TTAGGGT
1 TTAGGGT
188265 T
1 T
188266 ATGTCTTCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
7 30 1.00
ACGTcount: A:0.19, C:0.00, G:0.33, T:0.49
Consensus pattern (7 bp):
TTAGGGT
Found at i:188545 original size:21 final size:20
Alignment explanation
Indices: 188521--188559 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
188511 GTGATTTTAG
188521 ATTTAAGGTTTATGGTTTATA
1 ATTTAAGGTTTA-GGTTTATA
*
188542 ATTTATGGTTTAGGTTTA
1 ATTTAAGGTTTAGGTTTA
188560 GGGTTGATGG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 6 0.35
21 11 0.65
ACGTcount: A:0.26, C:0.00, G:0.21, T:0.54
Consensus pattern (20 bp):
ATTTAAGGTTTAGGTTTATA
Found at i:188734 original size:13 final size:13
Alignment explanation
Indices: 188716--188760 Score: 54
Period size: 13 Copynumber: 3.3 Consensus size: 13
188706 ATGGTTATAT
188716 GTTTAAGTTTAGG
1 GTTTAAGTTTAGG
188729 GTTTAAGCTTTTAGG
1 GTTTAAG--TTTAGG
* *
188744 TTTTAGGTTTAGG
1 GTTTAAGTTTAGG
188757 GTTT
1 GTTT
188761 GATATTTTAG
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
13 16 0.59
15 11 0.41
ACGTcount: A:0.18, C:0.02, G:0.29, T:0.51
Consensus pattern (13 bp):
GTTTAAGTTTAGG
Found at i:188753 original size:76 final size:77
Alignment explanation
Indices: 188619--188761 Score: 173
Period size: 76 Copynumber: 1.9 Consensus size: 77
188609 GGATTTAGGG
* ** * * *
188619 TTTAAGTGCTTATGGTTATACATTTTAGTTTAGGGTTTGCGATTTTATTATTTGGGTTTAGTGTT
1 TTTAAGTGCTTATGGTTATACATTTAAGTTTAGGGTTTAAGATTTTAGTATTTAGGTTTAGGGTT
188684 TGTGATTCTAAA
66 TGTGATTCTAAA
* ** *
188696 TTTAAG-GTTTATGGTTATATGTTTAAGTTTAGGGTTTAAGCTTTTAGGT-TTTAGGTTTAGGGT
1 TTTAAGTGCTTATGGTTATACATTTAAGTTTAGGGTTTAAGATTTTA-GTATTTAGGTTTAGGGT
188759 TTG
65 TTG
188762 ATATTTTAGA
Statistics
Matches: 55, Mismatches: 10, Indels: 3
0.81 0.15 0.04
Matches are distributed among these distances:
76 48 0.87
77 7 0.13
ACGTcount: A:0.20, C:0.03, G:0.24, T:0.52
Consensus pattern (77 bp):
TTTAAGTGCTTATGGTTATACATTTAAGTTTAGGGTTTAAGATTTTAGTATTTAGGTTTAGGGTT
TGTGATTCTAAA
Found at i:188768 original size:28 final size:28
Alignment explanation
Indices: 188717--188770 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
188707 TGGTTATATG
*
188717 TTTAAGTTTAGGGTTTAAGCTTTTAGGT
1 TTTAAGTTTAGGGTTTAAGATTTTAGGT
* * *
188745 TTTAGGTTTAGGGTTTGATATTTTAG
1 TTTAAGTTTAGGGTTTAAGATTTTAG
188771 ATTTAGAGTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.20, C:0.02, G:0.26, T:0.52
Consensus pattern (28 bp):
TTTAAGTTTAGGGTTTAAGATTTTAGGT
Found at i:188775 original size:76 final size:77
Alignment explanation
Indices: 188619--188805 Score: 168
Period size: 76 Copynumber: 2.4 Consensus size: 77
188609 GGATTTAGGG
* * ** * ** * * *
188619 TTTAAGTGCTTATGGTTATACATTTTAGTTTAGGGTTTGCGATTTTATTATTTGGGTTTAGTGTT
1 TTTAAGAGTTTATGGTTATATGTTTAAGTTTAGGGTTTAAGATTTTAGTATTTAGGTTTAGGGTT
188684 TGTGATTCTAAA
66 TGTGATTCTAAA
*
188696 TTTAAG-GTTTATGGTTATATGTTTAAGTTTAGGGTTTAAGCTTTTAGGT-TTTAGGTTTAGGGT
1 TTTAAGAGTTTATGGTTATATGTTTAAGTTTAGGGTTTAAGATTTTA-GTATTTAGGTTTAGGGT
* *
188759 TTGAT-ATTTTAGA
65 TTG-TGATTCTAAA
* *
188772 TTT-AGAGTTCATGGTT-TAATGTTTATGGTTTAGG
1 TTTAAGAGTTTATGGTTAT-ATGTTTA-AGTTTAGG
188806 ATTCAAGGTT
Statistics
Matches: 91, Mismatches: 14, Indels: 10
0.79 0.12 0.09
Matches are distributed among these distances:
75 3 0.03
76 73 0.80
77 15 0.16
ACGTcount: A:0.21, C:0.03, G:0.24, T:0.51
Consensus pattern (77 bp):
TTTAAGAGTTTATGGTTATATGTTTAAGTTTAGGGTTTAAGATTTTAGTATTTAGGTTTAGGGTT
TGTGATTCTAAA
Found at i:190384 original size:11 final size:11
Alignment explanation
Indices: 190368--190418 Score: 68
Period size: 11 Copynumber: 4.7 Consensus size: 11
190358 TTGTTCAACT
190368 ATGATTTGACA
1 ATGATTTGACA
*
190379 ATGATTCGACA
1 ATGATTTGACA
*
190390 GTGATTTGA-A
1 ATGATTTGACA
*
190400 ATGATTTGACT
1 ATGATTTGACA
190411 ATGATTTG
1 ATGATTTG
190419 GTATTGGAAA
Statistics
Matches: 34, Mismatches: 5, Indels: 2
0.83 0.12 0.05
Matches are distributed among these distances:
10 9 0.26
11 25 0.74
ACGTcount: A:0.31, C:0.08, G:0.22, T:0.39
Consensus pattern (11 bp):
ATGATTTGACA
Found at i:190404 original size:21 final size:22
Alignment explanation
Indices: 190365--190418 Score: 76
Period size: 21 Copynumber: 2.5 Consensus size: 22
190355 AACTTGTTCA
190365 ACTATGATTTGACAATGATTCG
1 ACTATGATTTGACAATGATTCG
*
190387 AC-AGTGATTTGA-AATGATTTG
1 ACTA-TGATTTGACAATGATTCG
190408 ACTATGATTTG
1 ACTATGATTTG
190419 GTATTGGAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
21 18 0.62
22 11 0.38
ACGTcount: A:0.31, C:0.09, G:0.20, T:0.39
Consensus pattern (22 bp):
ACTATGATTTGACAATGATTCG
Found at i:192500 original size:7 final size:7
Alignment explanation
Indices: 192485--192529 Score: 63
Period size: 7 Copynumber: 6.4 Consensus size: 7
192475 GGGTTATGTT
192485 TTTAAGG
1 TTTAAGG
*
192492 TTTATGG
1 TTTAAGG
*
192499 TTTAAGA
1 TTTAAGG
192506 TTTAAGG
1 TTTAAGG
192513 TTTAAGG
1 TTTAAGG
*
192520 TTTAGGG
1 TTTAAGG
192527 TTT
1 TTT
192530 GAGATTCTAT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
7 33 1.00
ACGTcount: A:0.24, C:0.00, G:0.27, T:0.49
Consensus pattern (7 bp):
TTTAAGG
Found at i:195351 original size:8 final size:9
Alignment explanation
Indices: 195338--195380 Score: 61
Period size: 9 Copynumber: 4.8 Consensus size: 9
195328 GTTCTTAGAT
*
195338 TTTTTTTATT
1 TTTTTTTA-C
195348 TTTTTTTAC
1 TTTTTTTAC
195357 TTTTTTTAC
1 TTTTTTTAC
195366 -TTTTTTAC
1 TTTTTTTAC
195374 TTTTTTT
1 TTTTTTT
195381 TCTTATATTT
Statistics
Matches: 31, Mismatches: 1, Indels: 3
0.89 0.03 0.09
Matches are distributed among these distances:
8 8 0.26
9 15 0.48
10 8 0.26
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTTTAC
Found at i:195352 original size:10 final size:10
Alignment explanation
Indices: 195337--195381 Score: 60
Period size: 10 Copynumber: 4.8 Consensus size: 10
195327 GGTTCTTAGA
*
195337 TTTTTTTTAT
1 TTTTTTTTAC
195347 TTTTTTTTAC
1 TTTTTTTTAC
195357 -TTTTTTTAC
1 TTTTTTTTAC
195366 --TTTTTTAC
1 TTTTTTTTAC
195374 TTTTTTTT
1 TTTTTTTT
195382 CTTATATTTT
Statistics
Matches: 32, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
8 8 0.25
9 9 0.28
10 15 0.47
ACGTcount: A:0.09, C:0.07, G:0.00, T:0.84
Consensus pattern (10 bp):
TTTTTTTTAC
Found at i:195444 original size:18 final size:17
Alignment explanation
Indices: 195423--195470 Score: 51
Period size: 18 Copynumber: 2.7 Consensus size: 17
195413 TTTTTTAAGT
*
195423 TTTATATTATTTTCTTAA
1 TTTATATTATTAT-TTAA
* *
195441 TTTATTTTGCTTATTTAA
1 TTTATATT-ATTATTTAA
195459 TTTATATTATTA
1 TTTATATTATTA
195471 CTTTTAAAAA
Statistics
Matches: 24, Mismatches: 5, Indels: 3
0.75 0.16 0.09
Matches are distributed among these distances:
17 3 0.12
18 18 0.75
19 3 0.12
ACGTcount: A:0.27, C:0.04, G:0.02, T:0.67
Consensus pattern (17 bp):
TTTATATTATTATTTAA
Found at i:195463 original size:36 final size:36
Alignment explanation
Indices: 195398--195469 Score: 94
Period size: 36 Copynumber: 2.0 Consensus size: 36
195388 TTTTGCTCTC
*
195398 TCTTAGATTTTTTTCTTTTTTAAGTTTTATATTATTT
1 TCTTAGATTTTTTTCTTATTTAAG-TTTATATTATTT
195435 TCTTA-ATTTATTTTGCTTATTTAA-TTTATATTATT
1 TCTTAGATTT-TTTT-CTTATTTAAGTTTATATTATT
195470 ACTTTTAAAA
Statistics
Matches: 32, Mismatches: 1, Indels: 5
0.84 0.03 0.13
Matches are distributed among these distances:
36 15 0.47
37 9 0.28
38 8 0.25
ACGTcount: A:0.22, C:0.06, G:0.04, T:0.68
Consensus pattern (36 bp):
TCTTAGATTTTTTTCTTATTTAAGTTTATATTATTT
Found at i:195546 original size:22 final size:23
Alignment explanation
Indices: 195459--195547 Score: 71
Period size: 23 Copynumber: 4.0 Consensus size: 23
195449 GCTTATTTAA
* *
195459 TTTATATTATTACTTTTAAAAAA
1 TTTATATTATTATTTTTAAAAAT
* * *
195482 TTTGTAATATGTA--TTTAAAATGT
1 TTTATATTAT-TATTTTTAAAA-AT
*
195505 TTTATAATATT-TTTTT-AAAAT
1 TTTATATTATTATTTTTAAAAAT
195526 TTTA-ATTATTATTTTTAAAAAT
1 TTTATATTATTATTTTTAAAAAT
195548 ATTTTTTAAC
Statistics
Matches: 53, Mismatches: 7, Indels: 13
0.73 0.10 0.18
Matches are distributed among these distances:
20 5 0.09
21 10 0.19
22 16 0.30
23 20 0.38
24 2 0.04
ACGTcount: A:0.39, C:0.01, G:0.03, T:0.56
Consensus pattern (23 bp):
TTTATATTATTATTTTTAAAAAT
Found at i:198547 original size:46 final size:46
Alignment explanation
Indices: 198483--198632 Score: 151
Period size: 46 Copynumber: 3.1 Consensus size: 46
198473 ACACACCGTA
*
198483 GCCATAGCCCA-ACCATGGTCTTACACGAATCACATATCACACTGAT
1 GCCATAGCCCAGA-TATGGTCTTACACGAATCACATATCACACTGAT
* * *
198529 GCCATATCCCAGATATGGTCTTATACGGAAGCACATAATCACATATCTCTGAT
1 GCCATAGCCCAGATATGGTCTTACAC-GAATCACAT-ATCAC--A---CTGAT
* *
198582 GCCATAGCCCAGCTATGGTCTTACAC-AGATCACATATCACATTGAT
1 GCCATAGCCCAGATATGGTCTTACACGA-ATCACATATCACACTGAT
198628 GCCAT
1 GCCAT
198633 GGTCCAACCA
Statistics
Matches: 86, Mismatches: 9, Indels: 18
0.76 0.08 0.16
Matches are distributed among these distances:
46 30 0.35
47 9 0.10
48 5 0.06
49 1 0.01
50 1 0.01
51 6 0.07
52 6 0.07
53 28 0.33
ACGTcount: A:0.31, C:0.29, G:0.15, T:0.25
Consensus pattern (46 bp):
GCCATAGCCCAGATATGGTCTTACACGAATCACATATCACACTGAT
Done.