Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 100 of 313
Found at i:33242418 original size:18 final size:18
Alignment explanation
Indices: 33242395--33242432 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
33242385 TGACAGGTGC
*
33242395 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
33242413 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
33242431 GT
1 GT
33242433 TTTTTTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:33248205 original size:126 final size:126
Alignment explanation
Indices: 33247980--33248613 Score: 1027
Period size: 126 Copynumber: 5.0 Consensus size: 126
33247970 TTATAGCCTC
* * *
33247980 ATTTTTCTACGATCTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTCCAGAAATGTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
33248045 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
33248106 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCCGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
33248171 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
33248232 ATTTTTCTACAAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
33248297 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACGTCTACTC-GAAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAG-AATT
* * * * *
33248358 ATTTTTCTACGAACTACTGTAGTAAAAGAGCGTTCAAGTGAGAGCATTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * * *
33248423 ACAGTGCATCCTGCTTGAAGCGTTTTCGACATTATTTGTTCATAAATGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
33248484 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTCTAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * *
33248549 ACAGTGCATCCTGCTTGAAGCGTTTTTCGACACTATTTGTCCAGAAACGTCTGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGC-ATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
33248611 ATT
1 ATT
33248614 CTTACAGAAA
Statistics
Matches: 472, Mismatches: 33, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
125 1 0.00
126 433 0.92
127 38 0.08
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:33249184 original size:20 final size:20
Alignment explanation
Indices: 33249159--33249230 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 20
33249149 CCATTATGTC
33249159 TCAATTAACCCTAAAATTAA
1 TCAATTAACCCTAAAATTAA
* * *
33249179 TCAATTAATCCTAAACCCTAAA
1 TCAATTAACCCTAAA--ATTAA
*
33249201 TCAA-T--CCCT-AATTTAA
1 TCAATTAACCCTAAAATTAA
33249217 TCAATTAACCCTAA
1 TCAATTAACCCTAA
33249231 TACCCTAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
16 7 0.17
17 1 0.03
18 2 0.05
19 7 0.17
20 15 0.38
21 1 0.03
22 7 0.17
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (20 bp):
TCAATTAACCCTAAAATTAA
Found at i:33249251 original size:34 final size:36
Alignment explanation
Indices: 33249175--33249251 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 36
33249165 AACCCTAAAA
*
33249175 TTAATCAATTAATCCTAAACCCTAAATCAATCCCTAAT
1 TTAATCAATTAACCCTAAACCCTAAATC-AT-CCTAAT
33249213 TTAATCAATTAACCCTAATACCCTAAA-C-T-CTAAT
1 TTAATCAATTAACCCTAA-ACCCTAAATCATCCTAAT
33249247 TTAAT
1 TTAAT
33249252 ATTTAGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
34 10 0.27
36 1 0.03
38 18 0.49
39 8 0.22
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.34
Consensus pattern (36 bp):
TTAATCAATTAACCCTAAACCCTAAATCATCCTAAT
Found at i:33249341 original size:16 final size:16
Alignment explanation
Indices: 33249317--33249356 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
33249307 TTAAAACCTT
* *
33249317 AAAACCCTAAGACCCA
1 AAAAACCTAAAACCCA
33249333 AAAAACCTAAAACCCA
1 AAAAACCTAAAACCCA
33249349 AAAAACCT
1 AAAAACCT
33249357 TAACCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.57, C:0.33, G:0.03, T:0.07
Consensus pattern (16 bp):
AAAAACCTAAAACCCA
Found at i:33249367 original size:22 final size:22
Alignment explanation
Indices: 33249342--33249388 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
33249332 AAAAAACCTA
*
33249342 AAACCCAAAAAACCTTAACCAT
1 AAACCCAAAAAACCCTAACCAT
* *
33249364 AAACCCTAAAAACCCTAACCCT
1 AAACCCAAAAAACCCTAACCAT
33249386 AAA
1 AAA
33249389 TCAATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (22 bp):
AAACCCAAAAAACCCTAACCAT
Found at i:33249715 original size:16 final size:16
Alignment explanation
Indices: 33249694--33249745 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
33249684 TTTGGTTCGC
33249694 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
33249710 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
33249726 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
33249742 TGTA
1 TGTA
33249746 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:33249792 original size:45 final size:44
Alignment explanation
Indices: 33249726--33249820 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
33249716 GGATTAGAGG
* *
33249726 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
33249771 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
33249815 TGTAAT
1 TGTAAT
33249821 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:33249990 original size:25 final size:25
Alignment explanation
Indices: 33249958--33250012 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
33249948 TAATTTAATC
*
33249958 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
33249982 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
33250007 ATATAT
1 ATATAT
33250013 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:33250194 original size:47 final size:46
Alignment explanation
Indices: 33250143--33250303 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 46
33250133 GATTTAATAA
33250143 AATTTAAAATAATTATAACTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTATAA-TAATAAATTATCTTATATGAATTTGTAT
* * * * *
33250190 AATTTAAAATAATTATTATTACATATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTG-TAT
* * * *
33250231 AATTTCATAA-AATTATTGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTA-TAATAATAAATTATCTTATATGAATTTGTAT
33250278 AATTTAAAATAATT-TATATAATAAAT
1 AATTTAAAATAATTATA-ATAATAAAT
33250304 CTATTGTATA
Statistics
Matches: 88, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 11 0.12
43 5 0.06
44 4 0.05
45 6 0.07
46 19 0.22
47 29 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTGTAT
Found at i:33255569 original size:48 final size:46
Alignment explanation
Indices: 33255506--33255639 Score: 153
Period size: 48 Copynumber: 2.8 Consensus size: 46
33255496 GTGATAATTT
*
33255506 TAAATTTTCAATACTATTCGATATTTTTTTAATTTATGCAAATT-TAAA
1 TAAA-TTTCAATACTATT-GATATTTTTTTCATTTATGC-AATTATAAA
* *
33255554 TAAATTTGCAATACTATTTGATATTTTATTCATTTATGCAATTATAAT
1 TAAATTT-CAATACTA-TTGATATTTTTTTCATTTATGCAATTATAAA
* *
33255602 TACAATTTCAATACTGCTTGATTTTTTTTTCATTTATG
1 TA-AATTTCAATACT-ATTGATATTTTTTTCATTTATG
33255640 ATGTTTGCAT
Statistics
Matches: 75, Mismatches: 6, Indels: 10
0.82 0.07 0.11
Matches are distributed among these distances:
47 7 0.09
48 61 0.81
49 7 0.09
ACGTcount: A:0.33, C:0.10, G:0.06, T:0.51
Consensus pattern (46 bp):
TAAATTTCAATACTATTGATATTTTTTTCATTTATGCAATTATAAA
Found at i:33257244 original size:18 final size:18
Alignment explanation
Indices: 33257221--33257258 Score: 67
Period size: 18 Copynumber: 2.1 Consensus size: 18
33257211 TGACAGGTGC
*
33257221 GTATCCTAGCCCTTATAT
1 GTATCCTAACCCTTATAT
33257239 GTATCCTAACCCTTATAT
1 GTATCCTAACCCTTATAT
33257257 GT
1 GT
33257259 TTTTTTTCCT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.24, C:0.26, G:0.11, T:0.39
Consensus pattern (18 bp):
GTATCCTAACCCTTATAT
Found at i:33261170 original size:16 final size:16
Alignment explanation
Indices: 33261151--33261181 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
33261141 CTTCTTCACT
33261151 TACTCACTTACTTAAA
1 TACTCACTTACTTAAA
*
33261167 TACTTACTTACTTAA
1 TACTCACTTACTTAA
33261182 TCAAATTTAT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.35, C:0.23, G:0.00, T:0.42
Consensus pattern (16 bp):
TACTCACTTACTTAAA
Found at i:33261187 original size:20 final size:20
Alignment explanation
Indices: 33261148--33261187 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
33261138 AAACTTCTTC
* *
33261148 ACTTACTCACTTACTTAAAT
1 ACTTACTCACTTAATCAAAT
*
33261168 ACTTACTTACTTAATCAAAT
1 ACTTACTCACTTAATCAAAT
33261188 TTATTAATAC
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.38, C:0.23, G:0.00, T:0.40
Consensus pattern (20 bp):
ACTTACTCACTTAATCAAAT
Found at i:33261567 original size:55 final size:53
Alignment explanation
Indices: 33261429--33261632 Score: 198
Period size: 55 Copynumber: 3.8 Consensus size: 53
33261419 TTTGAAAATT
* *
33261429 ACCATTGCCATGTCTTGACATGGTCTTACATGGTATCCTTGCCTTATGAACTC
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
* * *
33261482 ACCAATGCCATGCCTTGGCATGGTCTTACATGGGA-CCTTTGCCTTATAGTAACTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCC-TTGCCTTAT-G-AACTC
* *** * *
33261537 ATCAATGCCATGTCTTGACATGGTCTTACATGATTTTCTTGCCTTA-GAAACCTT
1 ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATG-AA-CTC
* * *
33261591 ACCAATTGTCATGCCTT-AGCATGGTCTTACATGGTATCCTTG
1 ACCAA-TGCCATGTCTTGA-CATGGTCTTACATGGGATCCTTG
33261633 AACCCTAATG
Statistics
Matches: 125, Mismatches: 19, Indels: 12
0.80 0.12 0.08
Matches are distributed among these distances:
52 2 0.02
53 43 0.34
54 9 0.07
55 70 0.56
56 1 0.01
ACGTcount: A:0.22, C:0.25, G:0.18, T:0.36
Consensus pattern (53 bp):
ACCAATGCCATGTCTTGACATGGTCTTACATGGGATCCTTGCCTTATGAACTC
Found at i:33263762 original size:126 final size:126
Alignment explanation
Indices: 33263537--33264170 Score: 1036
Period size: 126 Copynumber: 5.0 Consensus size: 126
33263527 TTATAGCCTC
* * *
33263537 ATTTTTCTACGATCTACTGTAGCAAAAAAGCGTCCACGTGGGAGCTTTTTCCAGAAATGTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
33263602 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* *
33263663 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCCGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
33263728 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
*
33263789 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCATGTGGGAGCTTTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* *
33263854 ACAGTGCATCCTGCTTGAAGCGTTTTCGACACTATTTGTTTAGAAACGTCTACTC-GAAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAG-AATT
* * * * *
33263915 ATTTTTCTACGAACTACTGTAGTAAAAGAGCGTTCAAGTGAGAGCATTTTCCAGAAATTTTGCTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * * *
33263980 ACAGTGCATCCTGCTTGAAGCGTTTTCGACATTATTTGTTCATAAATGTCTACTCAGAATT
66 ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
* * *
33264041 ATTTTTCTACGAACTACTGTAGCAAAAGAGCATCCACGTGGGAGCTTTTTCTAGAAATTTTACTG
1 ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
* * *
33264106 ACAGTGCATCCTGCTTGAAGCGTTTTTCGACACTATTTGTCCAGAAACGTCTGCTCAGAATT
66 ACAGTGCATCCTGCTTGAAGC-ATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
33264168 ATT
1 ATT
33264171 CTTACAGAAA
Statistics
Matches: 474, Mismatches: 31, Indels: 5
0.93 0.06 0.01
Matches are distributed among these distances:
125 1 0.00
126 435 0.92
127 38 0.08
ACGTcount: A:0.27, C:0.20, G:0.19, T:0.34
Consensus pattern (126 bp):
ATTTTTCTACGAACTACTGTAGCAAAAGAGCGTCCACGTGGGAGCTTTTTCCAGAAATTTTGCTG
ACAGTGCATCCTGCTTGAAGCATTTTCGACACTATTTGTTCAGAAACGTCTACTCAGAATT
Found at i:33264741 original size:20 final size:20
Alignment explanation
Indices: 33264716--33264787 Score: 62
Period size: 20 Copynumber: 3.7 Consensus size: 20
33264706 CCATTATGTC
33264716 TCAATTAACCCTAAAATTAA
1 TCAATTAACCCTAAAATTAA
* * *
33264736 TCAATTAATCCTAAACCCTAAA
1 TCAATTAACCCTAAA--ATTAA
*
33264758 TCAA-T--CCCT-AATTTAA
1 TCAATTAACCCTAAAATTAA
33264774 TCAATTAACCCTAA
1 TCAATTAACCCTAA
33264788 TACCCTAAAC
Statistics
Matches: 40, Mismatches: 6, Indels: 12
0.69 0.10 0.21
Matches are distributed among these distances:
16 7 0.17
17 1 0.03
18 2 0.05
19 7 0.17
20 15 0.38
21 1 0.03
22 7 0.17
ACGTcount: A:0.44, C:0.25, G:0.00, T:0.31
Consensus pattern (20 bp):
TCAATTAACCCTAAAATTAA
Found at i:33264808 original size:34 final size:36
Alignment explanation
Indices: 33264732--33264808 Score: 97
Period size: 38 Copynumber: 2.1 Consensus size: 36
33264722 AACCCTAAAA
*
33264732 TTAATCAATTAATCCTAAACCCTAAATCAATCCCTAAT
1 TTAATCAATTAACCCTAAACCCTAAATC-AT-CCTAAT
33264770 TTAATCAATTAACCCTAATACCCTAAA-C-T-CTAAT
1 TTAATCAATTAACCCTAA-ACCCTAAATCATCCTAAT
33264804 TTAAT
1 TTAAT
33264809 ATTTAGTATT
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
34 10 0.27
36 1 0.03
38 18 0.49
39 8 0.22
ACGTcount: A:0.42, C:0.25, G:0.00, T:0.34
Consensus pattern (36 bp):
TTAATCAATTAACCCTAAACCCTAAATCATCCTAAT
Found at i:33264898 original size:16 final size:16
Alignment explanation
Indices: 33264874--33264913 Score: 62
Period size: 16 Copynumber: 2.5 Consensus size: 16
33264864 TTAAAACCTT
* *
33264874 AAAACCCTAAGACCCA
1 AAAAACCTAAAACCCA
33264890 AAAAACCTAAAACCCA
1 AAAAACCTAAAACCCA
33264906 AAAAACCT
1 AAAAACCT
33264914 TAACCATAAA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.57, C:0.33, G:0.03, T:0.07
Consensus pattern (16 bp):
AAAAACCTAAAACCCA
Found at i:33264924 original size:22 final size:22
Alignment explanation
Indices: 33264899--33264945 Score: 67
Period size: 22 Copynumber: 2.1 Consensus size: 22
33264889 AAAAAACCTA
*
33264899 AAACCCAAAAAACCTTAACCAT
1 AAACCCAAAAAACCCTAACCAT
* *
33264921 AAACCCTAAAAACCCTAACCCT
1 AAACCCAAAAAACCCTAACCAT
33264943 AAA
1 AAA
33264946 TCAATTAAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.53, C:0.34, G:0.00, T:0.13
Consensus pattern (22 bp):
AAACCCAAAAAACCCTAACCAT
Found at i:33265272 original size:16 final size:16
Alignment explanation
Indices: 33265251--33265302 Score: 86
Period size: 16 Copynumber: 3.2 Consensus size: 16
33265241 TTTGGTTCGC
33265251 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
33265267 TGTATTGGATTAGAGG
1 TGTATTGGATTAGAGG
* *
33265283 TGTAATGGAATAGAGG
1 TGTATTGGATTAGAGG
33265299 TGTA
1 TGTA
33265303 ATAGCAAATC
Statistics
Matches: 34, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 34 1.00
ACGTcount: A:0.29, C:0.00, G:0.37, T:0.35
Consensus pattern (16 bp):
TGTATTGGATTAGAGG
Found at i:33265349 original size:45 final size:44
Alignment explanation
Indices: 33265283--33265377 Score: 136
Period size: 45 Copynumber: 2.1 Consensus size: 44
33265273 GGATTAGAGG
* *
33265283 TGTAATGGAATAGAGGTGTAATAGCAAATCAACTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAAC-ACTGTTTGGTTGAA
* **
33265328 TGTAATGGAATAGAGGCGTAATAGTAAAACTGTGTTTGGTTGAA
1 TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
33265372 TGTAAT
1 TGTAAT
33265378 AGAGGTGTAA
Statistics
Matches: 45, Mismatches: 5, Indels: 1
0.88 0.10 0.02
Matches are distributed among these distances:
44 18 0.40
45 27 0.60
ACGTcount: A:0.35, C:0.05, G:0.27, T:0.33
Consensus pattern (44 bp):
TGTAATGGAATAGAGGCGTAATAGCAAAACACTGTTTGGTTGAA
Found at i:33265547 original size:25 final size:25
Alignment explanation
Indices: 33265515--33265569 Score: 69
Period size: 25 Copynumber: 2.2 Consensus size: 25
33265505 TAATTTAATC
*
33265515 ATAT-TTAAACATAATTATTATT-AA
1 ATATATTAAACAT-ATTATAATTAAA
*
33265539 ATATATTAAATATATTATAATTAAA
1 ATATATTAAACATATTATAATTAAA
33265564 ATATAT
1 ATATAT
33265570 AATTTAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
24 12 0.44
25 15 0.56
ACGTcount: A:0.53, C:0.02, G:0.00, T:0.45
Consensus pattern (25 bp):
ATATATTAAACATATTATAATTAAA
Found at i:33265751 original size:47 final size:46
Alignment explanation
Indices: 33265700--33265860 Score: 140
Period size: 47 Copynumber: 3.6 Consensus size: 46
33265690 GATTTAATAA
33265700 AATTTAAAATAATTATAACTAATAAATTATCTTATATGAATTTGTAT
1 AATTTAAAATAATTATAA-TAATAAATTATCTTATATGAATTTGTAT
* * * * *
33265747 AATTTAAAATAATTATTATTACATATAAT-TTA-AT-AA---GATAT
1 AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTG-TAT
* * * *
33265788 AATTTCATAA-AATTATTGATAATAAATTTTCTTATATGAATTTATAT
1 AATTT-AAAATAATTA-TAATAATAAATTATCTTATATGAATTTGTAT
33265835 AATTTAAAATAATT-TATATAATAAAT
1 AATTTAAAATAATTATA-ATAATAAAT
33265861 CTATTGTATA
Statistics
Matches: 88, Mismatches: 15, Indels: 23
0.70 0.12 0.18
Matches are distributed among these distances:
40 1 0.01
41 13 0.15
42 11 0.12
43 5 0.06
44 4 0.05
45 6 0.07
46 19 0.22
47 29 0.33
ACGTcount: A:0.48, C:0.03, G:0.03, T:0.45
Consensus pattern (46 bp):
AATTTAAAATAATTATAATAATAAATTATCTTATATGAATTTGTAT
Found at i:33272568 original size:21 final size:21
Alignment explanation
Indices: 33272544--33272584 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
33272534 TCAAAACGAT
*
33272544 ATAGTTTAGCCTTTTAACTTA
1 ATAGTTTAGACTTTTAACTTA
*
33272565 ATAGTTTTGACTTTTAACTT
1 ATAGTTTAGACTTTTAACTT
33272585 TAGAAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (21 bp):
ATAGTTTAGACTTTTAACTTA
Found at i:33272788 original size:21 final size:21
Alignment explanation
Indices: 33272762--33272801 Score: 80
Period size: 21 Copynumber: 1.9 Consensus size: 21
33272752 TACCATGTAG
33272762 TTGGTCGGAGGTTGAATTGAA
1 TTGGTCGGAGGTTGAATTGAA
33272783 TTGGTCGGAGGTTGAATTG
1 TTGGTCGGAGGTTGAATTG
33272802 TATTATTATC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 19 1.00
ACGTcount: A:0.20, C:0.05, G:0.40, T:0.35
Consensus pattern (21 bp):
TTGGTCGGAGGTTGAATTGAA
Found at i:33283358 original size:61 final size:60
Alignment explanation
Indices: 33283226--33283363 Score: 174
Period size: 61 Copynumber: 2.3 Consensus size: 60
33283216 CAACGTGGGA
* * *
33283226 AATC-AACACGGCCTGGACTTCTTTACACGGGTAGACCACATGCCCTTCTAGTTTTAGCAG
1 AATCTAACACGGCCTGGACTTCCTTACACGGGTAGACCACATGCCCTTCTAG-TTCAACAG
* * *
33283286 ACTCTAGCACGGCCTGGACTTCCTTACATGGGTAGACCACATGCCCGTGTCTA-TTCAACAG
1 AATCTAACACGGCCTGGACTTCCTTACACGGGTAGACCACATGCCC-T-TCTAGTTCAACAG
33283347 AATCTAACACGG-CTGGA
1 AATCTAACACGGCCTGGA
33283364 AGCACTTACA
Statistics
Matches: 67, Mismatches: 8, Indels: 6
0.83 0.10 0.07
Matches are distributed among these distances:
60 8 0.12
61 54 0.81
62 1 0.01
63 4 0.06
ACGTcount: A:0.25, C:0.29, G:0.21, T:0.25
Consensus pattern (60 bp):
AATCTAACACGGCCTGGACTTCCTTACACGGGTAGACCACATGCCCTTCTAGTTCAACAG
Found at i:33286016 original size:30 final size:28
Alignment explanation
Indices: 33285980--33286037 Score: 71
Period size: 28 Copynumber: 2.0 Consensus size: 28
33285970 ACTATTGAAG
*
33285980 TATTTTTAGTTTCACACTTTGATACTTAAA
1 TATTTTTAGTCTCA-A-TTTGATACTTAAA
* *
33286010 TATTTTTTGTCTCAATTTGGTACTTAAA
1 TATTTTTAGTCTCAATTTGATACTTAAA
33286038 ATATCAATCA
Statistics
Matches: 25, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
28 12 0.48
29 1 0.04
30 12 0.48
ACGTcount: A:0.28, C:0.12, G:0.09, T:0.52
Consensus pattern (28 bp):
TATTTTTAGTCTCAATTTGATACTTAAA
Found at i:33286258 original size:29 final size:29
Alignment explanation
Indices: 33286205--33286267 Score: 67
Period size: 29 Copynumber: 2.2 Consensus size: 29
33286195 TATACATTAA
* *
33286205 AAAAATATGAAAAATAGAAATAAATATAT
1 AAAAATATCAAAAATAGAAATAAATATAG
*
33286234 AAAAAT-TCAAAAATA-AACATAAAATCTAG
1 AAAAATATCAAAAATAGAA-AT-AAATATAG
33286263 AAAAA
1 AAAAA
33286268 AAATATATAA
Statistics
Matches: 29, Mismatches: 3, Indels: 4
0.81 0.08 0.11
Matches are distributed among these distances:
27 2 0.07
28 10 0.34
29 17 0.59
ACGTcount: A:0.70, C:0.05, G:0.05, T:0.21
Consensus pattern (29 bp):
AAAAATATCAAAAATAGAAATAAATATAG
Found at i:33286266 original size:20 final size:20
Alignment explanation
Indices: 33286242--33286288 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
33286232 ATAAAAATTC
33286242 AAAAATAAACATA-AAATCT
1 AAAAATAAACATATAAATCT
* * *
33286261 AGAAAAAAAATATATAAATTT
1 A-AAAATAAACATATAAATCT
33286282 AAAAATA
1 AAAAATA
33286289 TTTTTTAAAA
Statistics
Matches: 22, Mismatches: 4, Indels: 3
0.76 0.14 0.10
Matches are distributed among these distances:
19 1 0.05
20 15 0.68
21 6 0.27
ACGTcount: A:0.70, C:0.04, G:0.02, T:0.23
Consensus pattern (20 bp):
AAAAATAAACATATAAATCT
Found at i:33287860 original size:26 final size:26
Alignment explanation
Indices: 33287831--33287882 Score: 104
Period size: 26 Copynumber: 2.0 Consensus size: 26
33287821 GAATATATTT
33287831 GATGGAAGATAATTTCAACCAAAAAA
1 GATGGAAGATAATTTCAACCAAAAAA
33287857 GATGGAAGATAATTTCAACCAAAAAA
1 GATGGAAGATAATTTCAACCAAAAAA
33287883 TATCGGCGGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 26 1.00
ACGTcount: A:0.54, C:0.12, G:0.15, T:0.19
Consensus pattern (26 bp):
GATGGAAGATAATTTCAACCAAAAAA
Found at i:33292726 original size:23 final size:22
Alignment explanation
Indices: 33292699--33292748 Score: 84
Period size: 21 Copynumber: 2.3 Consensus size: 22
33292689 TGCCTAAAAT
33292699 GACACACGAGGTGCCTG-ATAC
1 GACACACGAGGTGCCTGAATAC
33292720 GACACACGAGGTGCCTGAAATAC
1 GACACACGAGGTGCCTG-AATAC
33292743 GACACA
1 GACACA
33292749 TAAAGTGCCT
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
21 17 0.63
23 10 0.37
ACGTcount: A:0.34, C:0.28, G:0.26, T:0.12
Consensus pattern (22 bp):
GACACACGAGGTGCCTGAATAC
Found at i:33292756 original size:23 final size:23
Alignment explanation
Indices: 33292675--33292760 Score: 81
Period size: 21 Copynumber: 3.9 Consensus size: 23
33292665 CTGATCAGAG
*
33292675 TACGACACATAAAGTGCCT-AAA
1 TACGACACACAAAGTGCCTGAAA
* * *
33292697 -ATGACACACGAGGTGCCTG--A
1 TACGACACACAAAGTGCCTGAAA
* *
33292717 TACGACACACGAGGTGCCTGAAA
1 TACGACACACAAAGTGCCTGAAA
*
33292740 TACGACACATAAAGTGCCTGA
1 TACGACACACAAAGTGCCTGA
33292761 TCAGTAAAGC
Statistics
Matches: 52, Mismatches: 8, Indels: 7
0.78 0.12 0.10
Matches are distributed among these distances:
20 1 0.02
21 32 0.62
23 19 0.37
ACGTcount: A:0.37, C:0.24, G:0.22, T:0.16
Consensus pattern (23 bp):
TACGACACACAAAGTGCCTGAAA
Found at i:33293158 original size:15 final size:15
Alignment explanation
Indices: 33293133--33293190 Score: 89
Period size: 15 Copynumber: 3.8 Consensus size: 15
33293123 ATATATATAT
33293133 TATATAATTCAATCAA
1 TATA-AATTCAATCAA
33293149 TATAAATTCAATCAA
1 TATAAATTCAATCAA
* *
33293164 AATAATTTCAATCAA
1 TATAAATTCAATCAA
33293179 TATAAATTCAAT
1 TATAAATTCAAT
33293191 AAATTCATCG
Statistics
Matches: 38, Mismatches: 4, Indels: 1
0.88 0.09 0.02
Matches are distributed among these distances:
15 34 0.89
16 4 0.11
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (15 bp):
TATAAATTCAATCAA
Found at i:33294444 original size:5 final size:5
Alignment explanation
Indices: 33294436--33294462 Score: 54
Period size: 5 Copynumber: 5.4 Consensus size: 5
33294426 TCTTTAGTTT
33294436 ATATA ATATA ATATA ATATA ATATA AT
1 ATATA ATATA ATATA ATATA ATATA AT
33294463 TAAAACATAA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 22 1.00
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (5 bp):
ATATA
Found at i:33294498 original size:8 final size:8
Alignment explanation
Indices: 33294485--33294513 Score: 58
Period size: 8 Copynumber: 3.6 Consensus size: 8
33294475 TATCTTTATT
33294485 ATATAATA
1 ATATAATA
33294493 ATATAATA
1 ATATAATA
33294501 ATATAATA
1 ATATAATA
33294509 ATATA
1 ATATA
33294514 CTAAGCATAA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 21 1.00
ACGTcount: A:0.62, C:0.00, G:0.00, T:0.38
Consensus pattern (8 bp):
ATATAATA
Found at i:33297582 original size:37 final size:37
Alignment explanation
Indices: 33297532--33297605 Score: 139
Period size: 37 Copynumber: 2.0 Consensus size: 37
33297522 ATATTATCTT
33297532 GTTTTATTTTCTTATTTTATTTAAGAAGAGTTTTCAA
1 GTTTTATTTTCTTATTTTATTTAAGAAGAGTTTTCAA
*
33297569 GTTTTATTTTCTTATTTTATTTTAGAAGAGTTTTCAA
1 GTTTTATTTTCTTATTTTATTTAAGAAGAGTTTTCAA
33297606 ATATACATGA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
37 36 1.00
ACGTcount: A:0.26, C:0.05, G:0.11, T:0.58
Consensus pattern (37 bp):
GTTTTATTTTCTTATTTTATTTAAGAAGAGTTTTCAA
Found at i:33300767 original size:21 final size:21
Alignment explanation
Indices: 33300743--33300783 Score: 64
Period size: 21 Copynumber: 2.0 Consensus size: 21
33300733 TCAAAACGAC
*
33300743 ATAGTTTAGCCTTTTAACTTA
1 ATAGTTTAGACTTTTAACTTA
*
33300764 ATAGTTTTGACTTTTAACTT
1 ATAGTTTAGACTTTTAACTT
33300784 TAGAAAATGT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
21 18 1.00
ACGTcount: A:0.27, C:0.12, G:0.10, T:0.51
Consensus pattern (21 bp):
ATAGTTTAGACTTTTAACTTA
Found at i:33306265 original size:30 final size:30
Alignment explanation
Indices: 33306231--33306291 Score: 77
Period size: 30 Copynumber: 2.0 Consensus size: 30
33306221 TCCTTAACTC
33306231 AAACTTTGGAAAAATTACAATTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
* * * * *
33306261 AAACTTTTGCATATTTACACTTTTGCCCCT
1 AAACTTTGGAAAAATTACAATTTTGCCCCT
33306291 A
1 A
33306292 GGCTCGGGAA
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.31, C:0.23, G:0.08, T:0.38
Consensus pattern (30 bp):
AAACTTTGGAAAAATTACAATTTTGCCCCT
Found at i:33308587 original size:20 final size:23
Alignment explanation
Indices: 33308557--33308605 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
33308547 TGCTTTTGTC
*
33308557 TTCTATCTTGTT-TT-TGTTTTT
1 TTCTATCTTGTTGTTATGTTATT
33308578 TTCT-TCTTGTTGTTATGTTATT
1 TTCTATCTTGTTGTTATGTTATT
33308600 TTCTAT
1 TTCTAT
33308606 TTCAATTCAT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
20 7 0.29
21 6 0.25
22 10 0.42
23 1 0.04
ACGTcount: A:0.08, C:0.10, G:0.10, T:0.71
Consensus pattern (23 bp):
TTCTATCTTGTTGTTATGTTATT
Found at i:33309529 original size:3 final size:3
Alignment explanation
Indices: 33309510--33309574 Score: 51
Period size: 3 Copynumber: 22.0 Consensus size: 3
33309500 TCATTTTTCC
* * * * * *
33309510 TCT TCT CCT TAT TCT TCT TCT T-T TCT TCA TCT TCA TCT TCA TCT TCA
1 TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT TCT
* *
33309557 TCT TCT TTT TCT TTT TCT
1 TCT TCT TCT TCT TCT TCT
33309575 CTAACCCTAA
Statistics
Matches: 45, Mismatches: 16, Indels: 2
0.71 0.25 0.03
Matches are distributed among these distances:
2 2 0.04
3 43 0.96
ACGTcount: A:0.08, C:0.29, G:0.00, T:0.63
Consensus pattern (3 bp):
TCT
Found at i:33309542 original size:6 final size:6
Alignment explanation
Indices: 33309533--33309561 Score: 58
Period size: 6 Copynumber: 4.8 Consensus size: 6
33309523 CTTCTTCTTT
33309533 TCTTCA TCTTCA TCTTCA TCTTCA TCTTC
1 TCTTCA TCTTCA TCTTCA TCTTCA TCTTC
33309562 TTTTTCTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 23 1.00
ACGTcount: A:0.14, C:0.34, G:0.00, T:0.52
Consensus pattern (6 bp):
TCTTCA
Found at i:33310725 original size:32 final size:31
Alignment explanation
Indices: 33310689--33310795 Score: 124
Period size: 32 Copynumber: 3.4 Consensus size: 31
33310679 CGTGGTTCTA
* * *
33310689 TGAAATAATAACAAATATCAGCTTTCATTTTG
1 TGAAATGATAACAAAT-TCAACTTTAATTTTG
* *
33310721 TGAAATGGTAACAAATTACAACTTTAATTTTT
1 TGAAATGATAACAAATT-CAACTTTAATTTTG
*
33310753 TGAAATGATAATAAATGTCAACTTTAATTTTG
1 TGAAATGATAACAAAT-TCAACTTTAATTTTG
*
33310785 TTAAATGATAA
1 TGAAATGATAA
33310796 TAATATTCTT
Statistics
Matches: 64, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
31 1 0.02
32 62 0.97
33 1 0.02
ACGTcount: A:0.42, C:0.08, G:0.10, T:0.39
Consensus pattern (31 bp):
TGAAATGATAACAAATTCAACTTTAATTTTG
Found at i:33319924 original size:14 final size:13
Alignment explanation
Indices: 33319904--33319935 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
33319894 AATATTTAAC
33319904 TTGTTCTTAATTA
1 TTGTTCTTAATTA
33319917 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
33319931 TTGTT
1 TTGTT
33319936 TTGATATCCC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:33323868 original size:13 final size:13
Alignment explanation
Indices: 33323835--33323919 Score: 57
Period size: 12 Copynumber: 6.3 Consensus size: 13
33323825 TTTAGAAATA
*
33323835 TTTATTTTATTATT
1 TTTATTTT-TAATT
33323849 TTATATTTTTAATT
1 TT-TATTTTTAATT
** *
33323863 TTTATTCAAACTATTT
1 TTTATT---TTTAATT
33323879 TTTATTTTT-ATT
1 TTTATTTTTAATT
33323891 TTTATTTTT-ATT
1 TTTATTTTTAATT
* *
33323903 TTTATTCTTATTT
1 TTTATTTTTAATT
33323916 TTTA
1 TTTA
33323920 GCAGATTTTA
Statistics
Matches: 57, Mismatches: 9, Indels: 11
0.74 0.12 0.14
Matches are distributed among these distances:
12 22 0.39
13 11 0.19
14 8 0.14
15 6 0.11
16 10 0.18
ACGTcount: A:0.22, C:0.04, G:0.00, T:0.74
Consensus pattern (13 bp):
TTTATTTTTAATT
Found at i:33323888 original size:6 final size:6
Alignment explanation
Indices: 33323877--33323917 Score: 73
Period size: 6 Copynumber: 6.8 Consensus size: 6
33323867 TTCAAACTAT
*
33323877 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTCTTA TTTTT
1 TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTTA TTTTT
33323918 TAGCAGATTT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
6 33 1.00
ACGTcount: A:0.15, C:0.02, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTTTA
Found at i:33326515 original size:19 final size:19
Alignment explanation
Indices: 33326487--33326525 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
33326477 AGAGCGAAAG
33326487 AAACGAG-AAACGGGCCAA
1 AAACGAGAAAACGGGCCAA
*
33326505 AAACAGAGAAAATGGGCCAA
1 AAAC-GAGAAAACGGGCCAA
33326525 A
1 A
33326526 GTACTAACTC
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 4 0.22
19 3 0.17
20 11 0.61
ACGTcount: A:0.54, C:0.18, G:0.26, T:0.03
Consensus pattern (19 bp):
AAACGAGAAAACGGGCCAA
Found at i:33326650 original size:52 final size:51
Alignment explanation
Indices: 33326556--33326654 Score: 128
Period size: 52 Copynumber: 1.9 Consensus size: 51
33326546 GGACTTCCTC
33326556 ACACGGGCAGACCACACGGCCGTGCTAACTTGGCAGAATCGAAGCACGATTT
1 ACACGGGCAGACCACACGGCCGTGCTAACTTGGCAGAATCGAA-CACGATTT
* * * **
33326608 ACACGGGTAGACCACACGGTCGTG-TCAATTTGGCAGGCTCGAACACG
1 ACACGGGCAGACCACACGGCCGTGCT-AACTTGGCAGAATCGAACACG
33326655 GCCTGGAGTA
Statistics
Matches: 41, Mismatches: 5, Indels: 3
0.84 0.10 0.06
Matches are distributed among these distances:
51 5 0.12
52 36 0.88
ACGTcount: A:0.27, C:0.28, G:0.28, T:0.16
Consensus pattern (51 bp):
ACACGGGCAGACCACACGGCCGTGCTAACTTGGCAGAATCGAACACGATTT
Found at i:33327075 original size:14 final size:13
Alignment explanation
Indices: 33327055--33327086 Score: 55
Period size: 14 Copynumber: 2.4 Consensus size: 13
33327045 TATTTTTAAC
33327055 TTGTTCTTAATTA
1 TTGTTCTTAATTA
33327068 TGTGTTCTTAATTA
1 T-TGTTCTTAATTA
33327082 TTGTT
1 TTGTT
33327087 TTGATATCTC
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
13 5 0.28
14 13 0.72
ACGTcount: A:0.19, C:0.06, G:0.12, T:0.62
Consensus pattern (13 bp):
TTGTTCTTAATTA
Found at i:33331045 original size:16 final size:16
Alignment explanation
Indices: 33331024--33331057 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
33331014 GAAGATGTAA
33331024 CATGAAAGTTTTGTTT
1 CATGAAAGTTTTGTTT
33331040 CATGAAAGTTTTGTTT
1 CATGAAAGTTTTGTTT
33331056 CA
1 CA
33331058 AAACCCTTCT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.26, C:0.09, G:0.18, T:0.47
Consensus pattern (16 bp):
CATGAAAGTTTTGTTT
Found at i:33351799 original size:34 final size:34
Alignment explanation
Indices: 33351756--33351820 Score: 114
Period size: 34 Copynumber: 1.9 Consensus size: 34
33351746 CATCATTTAC
33351756 TGCCAAGCAATAACTCCA-TTGACAATAATAGAAA
1 TGCCAAGCAATAACTCCACTT-ACAATAATAGAAA
33351790 TGCCAAGCAATAACTCCACTTACAATAATAG
1 TGCCAAGCAATAACTCCACTTACAATAATAG
33351821 GCATCCTACC
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
34 28 0.93
35 2 0.07
ACGTcount: A:0.45, C:0.23, G:0.11, T:0.22
Consensus pattern (34 bp):
TGCCAAGCAATAACTCCACTTACAATAATAGAAA
Found at i:33356564 original size:21 final size:21
Alignment explanation
Indices: 33356540--33356580 Score: 57
Period size: 21 Copynumber: 2.0 Consensus size: 21
33356530 ATGTTGAATA
*
33356540 ATATTTTTTAATAAA-TAATTT
1 ATATTTTGTAA-AAATTAATTT
33356561 ATATTTTGTAAAAATTAATT
1 ATATTTTGTAAAAATTAATT
33356581 AATTATTGAT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
20 3 0.17
21 15 0.83
ACGTcount: A:0.44, C:0.00, G:0.02, T:0.54
Consensus pattern (21 bp):
ATATTTTGTAAAAATTAATTT
Found at i:33358973 original size:131 final size:130
Alignment explanation
Indices: 33358825--33359329 Score: 309
Period size: 130 Copynumber: 3.9 Consensus size: 130
33358815 AATAAAGACC
* * * * *
33358825 TAAAGGAATACTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAAGGCATGATTC
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* * * *
33358890 C-CGAATTGTCAAACACC-GAGTATTGCCCTCGTTTTAAAGGATTTTTAGAAGAGC-CGAGTGAA
66 CACGAATTGCCAAACACCAGA-TATCGCCCTCGTTTT-AAGGA-TTTTAAAAGA-CACGAGCGAA
33358952 ATTT
127 ATTT
* * * * ** * * *
33358956 TGAAGGGATATTTGATTGTTTTAAACAATCGAGAAATTGCTACCCAACACGTTAGGGCACGATCC
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* * *
33359021 CACGAATTGCCAAATACCAGATATCGCCTTCGTTTTAGGGATTTTAAAAGACACGAGCGAAATTT
66 CACGAATTGCCAAACACCAGATATCGCCCTCGTTTTAAGGATTTTAAAAGACACGAGCGAAATTT
* * * * ** * * * *
33359086 TAAAGTGATATTCGATTATTTTGAGCAAA-TACGAAATTGCAACCCAACATGTTAGGGCACGATT
1 TAAAGGGATATTCGATTGTTTTGAACAAACGA-GAAATCACAACCCAACACGATAAGGCACGATC
* * * * * * ** * *** ** *
33359150 TCGCGAATTGCAAAACATCAAATCTCATCTTCG-TTTAAGGGATTTTAAAAGATGTGAATGGAAT
65 CCACGAATTGCCAAACACCAGATATCGCCCTCGTTTTAA-GGATTTTAAAAGACACGAGCGAAAT
33359214 TT
129 TT
** * * * * * ** * * *
33359216 CGAAGGGAAATTCGATTATTTTGAGCAAATGCGAAATTGCAACCCAACACGTTAGGGCACGATTC
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* * * * * * * * *
33359281 CGCGAATTACCGAACATCAAATTTCGTCTTCGTTTTGAAGAATTTTAAA
66 CACGAATTGCCAAACACCAGATATCGCCCTCGTTTT-AAGGATTTTAAA
33359330 TGAATACTTA
Statistics
Matches: 304, Mismatches: 62, Indels: 16
0.80 0.16 0.04
Matches are distributed among these distances:
129 6 0.02
130 199 0.65
131 68 0.22
132 29 0.10
133 2 0.01
ACGTcount: A:0.34, C:0.18, G:0.19, T:0.28
Consensus pattern (130 bp):
TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
CACGAATTGCCAAACACCAGATATCGCCCTCGTTTTAAGGATTTTAAAAGACACGAGCGAAATTT
Found at i:33359297 original size:130 final size:130
Alignment explanation
Indices: 33358988--33359315 Score: 413
Period size: 130 Copynumber: 2.5 Consensus size: 130
33358978 AAACAATCGA
* * * * * * *
33358988 GAAATTGCTACCCAACACGTTAGGGCACGATCCCACGAATTGCCAAATACCAGATATCGCCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
* * * * *
33359053 TTTTAGGGATTTTAAAAGACACGAGCGAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATAC
66 TTTAAGGGATTTTAAAAGACACGAACGAAATTTCAAAGGGAAATTCGATTATTTTGAGCAAATAC
* * * * *
33359118 GAAATTGCAACCCAACATGTTAGGGCACGATTTCGCGAATTGCAAAACATCAAATCTCATCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
*** * * * *
33359183 TTTAAGGGATTTTAAAAGATGTGAATGGAATTTCGAAGGGAAATTCGATTATTTTGAGCAAATGC
66 TTTAAGGGATTTTAAAAGACACGAACGAAATTTCAAAGGGAAATTCGATTATTTTGAGCAAATAC
* * *
33359248 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTACCGAACATCAAATTTCGTCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
33359313 TTT
66 TTT
33359316 TGAAGAATTT
Statistics
Matches: 167, Mismatches: 31, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
130 167 1.00
ACGTcount: A:0.33, C:0.20, G:0.19, T:0.28
Consensus pattern (130 bp):
GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
TTTAAGGGATTTTAAAAGACACGAACGAAATTTCAAAGGGAAATTCGATTATTTTGAGCAAATAC
Found at i:33365882 original size:131 final size:130
Alignment explanation
Indices: 33365734--33366238 Score: 383
Period size: 130 Copynumber: 3.9 Consensus size: 130
33365724 AATAAAGACC
* * * * *
33365734 TAAAGGAATACTCGATTGTTTTGAACAAACGAGAAATCACAACCCAGCACGATAAGGCATGATTC
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* * * **
33365799 C-CGAATTGTCAAACACC-GAGTATTGCCCTCGTTTTAAAGGATTTTTAGAAGAGC-CGAGTGAA
66 CACGAATTGCCAAACACCAGA-TATCGCCCTCGTTTT-AAGGA-TTTTAAAAGA-CACGAGCAAA
33365861 ATTT
127 ATTT
* * * * ** * * *
33365865 TGAAGGGATATTTGATTGTTTTAAACAATCGAGAAATTGCTACCCAACACGTTAGGGCACGATCC
1 TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
* * *
33365930 CACGAATTGCCAAATACCAGATATCGCCTTCGTTTTAGGGATTTTAAAAGACACGAGCAAAATTT
66 CACGAATTGCCAAACACCAGATATCGCCCTCGTTTTAAGGATTTTAAAAGACACGAGCAAAATTT
* * * * ** * * *
33365995 TAAAGTGATATTCGATTATTTTGAGCAAA-TACGAAATTGCAACCCAACACGTTAGGGCACGATT
1 TAAAGGGATATTCGATTGTTTTGAACAAACGA-GAAATCACAACCCAACACGATAAGGCACGATC
* * * * * ** *
33366059 TCGCGAATTGCCAAACATCAAATCTCATCTTCG-TTTAAGGGATTTTAAAAGACACGAGCAAAAT
65 CCACGAATTGCCAAACACCAGATATCGCCCTCGTTTTAA-GGATTTTAAAAGACACGAGCAAAAT
33366123 TT
129 TT
* * * * ** * * *
33366125 TAAAGTGATATTCGATTATTTTGAGCAAA-TACGAAATTGCAACCCAACACGTTAGGGCACGATT
1 TAAAGGGATATTCGATTGTTTTGAACAAACGA-GAAATCACAACCCAACACGATAAGGCACGATC
* * * * * * * * *
33366189 CCGCGAATTACCGAACATCAAATTTCGTCTTCGTTTTGAAGAATTTTAAA
65 CCACGAATTGCCAAACACCAGATATCGCCCTCGTTTT-AAGGATTTTAAA
33366239 TGAATACTTA
Statistics
Matches: 320, Mismatches: 47, Indels: 14
0.84 0.12 0.04
Matches are distributed among these distances:
129 6 0.02
130 215 0.67
131 68 0.21
132 29 0.09
133 2 0.01
ACGTcount: A:0.35, C:0.19, G:0.18, T:0.28
Consensus pattern (130 bp):
TAAAGGGATATTCGATTGTTTTGAACAAACGAGAAATCACAACCCAACACGATAAGGCACGATCC
CACGAATTGCCAAACACCAGATATCGCCCTCGTTTTAAGGATTTTAAAAGACACGAGCAAAATTT
Found at i:33366220 original size:130 final size:130
Alignment explanation
Indices: 33365897--33366224 Score: 530
Period size: 130 Copynumber: 2.5 Consensus size: 130
33365887 AAACAATCGA
* * * * * * *
33365897 GAAATTGCTACCCAACACGTTAGGGCACGATCCCACGAATTGCCAAATACCAGATATCGCCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
*
33365962 TTTTAGGGATTTTAAAAGACACGAGCAAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATAC
66 TTTAAGGGATTTTAAAAGACACGAGCAAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATAC
* * *
33366027 GAAATTGCAACCCAACACGTTAGGGCACGATTTCGCGAATTGCCAAACATCAAATCTCATCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
33366092 TTTAAGGGATTTTAAAAGACACGAGCAAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATAC
66 TTTAAGGGATTTTAAAAGACACGAGCAAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATAC
* * *
33366157 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTACCGAACATCAAATTTCGTCTTCG
1 GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
33366222 TTT
66 TTT
33366225 TGAAGAATTT
Statistics
Matches: 182, Mismatches: 16, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
130 182 1.00
ACGTcount: A:0.34, C:0.21, G:0.17, T:0.28
Consensus pattern (130 bp):
GAAATTGCAACCCAACACGTTAGGGCACGATTCCGCGAATTGCCAAACATCAAATATCGTCTTCG
TTTAAGGGATTTTAAAAGACACGAGCAAAATTTTAAAGTGATATTCGATTATTTTGAGCAAATAC
Found at i:33371138 original size:52 final size:52
Alignment explanation
Indices: 33371068--33371239 Score: 193
Period size: 52 Copynumber: 3.2 Consensus size: 52
33371058 GACGGAAAAG
* **
33371068 ATGTGATATGTGCGCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
1 ATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
* * *
33371120 ATGTGATACGTGTTCCCGTATAAAACCATAGTTGGGCTATGGCGTCGGTGTA
1 ATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
* * * * *
33371172 ATGTGATAATGTGATT-CCGTATAAGACAATATCTGGGATATGGCATCGGTATTA
1 ATGTGAT-ACGTG-TTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGT-GTA
*
33371226 CATGTGATCCGTGT
1 -ATGTGATACGTGT
33371240 AAGACCATGG
Statistics
Matches: 100, Mismatches: 16, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
52 53 0.53
53 33 0.33
54 7 0.07
55 7 0.07
ACGTcount: A:0.25, C:0.16, G:0.28, T:0.31
Consensus pattern (52 bp):
ATGTGATACGTGTTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTA
Found at i:33372111 original size:13 final size:13
Alignment explanation
Indices: 33372095--33372119 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
33372085 TAGCCACATG
33372095 GCCGTGTGCCCAA
1 GCCGTGTGCCCAA
33372108 GCCGTGTGCCCA
1 GCCGTGTGCCCA
33372120 TCTGATACTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.12, C:0.40, G:0.32, T:0.16
Consensus pattern (13 bp):
GCCGTGTGCCCAA
Found at i:33375293 original size:36 final size:35
Alignment explanation
Indices: 33375253--33375323 Score: 124
Period size: 36 Copynumber: 2.0 Consensus size: 35
33375243 ATAAGATAGG
*
33375253 GAAAGGAGTGAAACTTCCTGACTGATGAATAAATT
1 GAAAGAAGTGAAACTTCCTGACTGATGAATAAATT
33375288 NGAAAGAAGTGAAACTTCCTGACTGATGAATAAATT
1 -GAAAGAAGTGAAACTTCCTGACTGATGAATAAATT
33375324 CCTTGAACTG
Statistics
Matches: 34, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.41, C:0.11, G:0.21, T:0.25
Consensus pattern (35 bp):
GAAAGAAGTGAAACTTCCTGACTGATGAATAAATT
Found at i:33381342 original size:17 final size:18
Alignment explanation
Indices: 33381309--33381342 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
33381299 GAATTATATA
*
33381309 ATAGAAAGATGCAACGAG
1 ATAGAAAGATACAACGAG
33381327 ATAGAAAGA-ACAACGA
1 ATAGAAAGATACAACGA
33381343 ATCTTTTAAA
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.56, C:0.12, G:0.24, T:0.09
Consensus pattern (18 bp):
ATAGAAAGATACAACGAG
Found at i:33386700 original size:53 final size:52
Alignment explanation
Indices: 33386561--33386700 Score: 154
Period size: 52 Copynumber: 2.7 Consensus size: 52
33386551 GATATGTGCA
* *
33386561 CCCGTATAAGACCATAGCTGGGCTATGGCATTGATGCAATGTGATACGCGTT
1 CCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATACGCGTT
* * * ** * *
33386613 CCCGTATAAAACCATAGCTGGGCTATGACGTCGGTGTGATGTGATAATGTGTT
1 CCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGAT-ACGCGTT
* * * *
33386666 TCCGTATAAGACAATATCTGGGATATGGCATCGGT
1 CCCGTATAAGACCATAGCTGGGCTATGGCATCGGT
33386701 ATTACATGTG
Statistics
Matches: 71, Mismatches: 16, Indels: 1
0.81 0.18 0.01
Matches are distributed among these distances:
52 38 0.54
53 33 0.46
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.29
Consensus pattern (52 bp):
CCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGCAATGTGATACGCGTT
Found at i:33387720 original size:29 final size:29
Alignment explanation
Indices: 33387678--33387754 Score: 127
Period size: 29 Copynumber: 2.7 Consensus size: 29
33387668 TTCCATACGA
*
33387678 GCTGGCTACACGGCCATGTAATCCCACGG
1 GCTGGCCACACGGCCATGTAATCCCACGG
* *
33387707 GCTGGTCACACGGCCATGTGATCCCACGG
1 GCTGGCCACACGGCCATGTAATCCCACGG
33387736 GCTGGCCACACGGCCATGT
1 GCTGGCCACACGGCCATGT
33387755 CCCAGGCCAC
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
29 44 1.00
ACGTcount: A:0.18, C:0.35, G:0.30, T:0.17
Consensus pattern (29 bp):
GCTGGCCACACGGCCATGTAATCCCACGG
Found at i:33389011 original size:3 final size:3
Alignment explanation
Indices: 33389003--33389104 Score: 195
Period size: 3 Copynumber: 33.7 Consensus size: 3
33388993 ACTTGCGCCT
33389003 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33389051 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA
33389099 TCTA TT
1 T-TA TT
33389105 TATTTATCAC
Statistics
Matches: 98, Mismatches: 0, Indels: 2
0.98 0.00 0.02
Matches are distributed among these distances:
3 95 0.97
4 3 0.03
ACGTcount: A:0.32, C:0.01, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:33389414 original size:3 final size:3
Alignment explanation
Indices: 33389401--33389431 Score: 53
Period size: 3 Copynumber: 10.0 Consensus size: 3
33389391 TTCATATCTA
33389401 TAT TCAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT T-AT TAT TAT TAT TAT TAT TAT TAT TAT
33389432 AATTTGTTTG
Statistics
Matches: 27, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
3 24 0.89
4 3 0.11
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:33398046 original size:48 final size:47
Alignment explanation
Indices: 33397975--33398184 Score: 206
Period size: 47 Copynumber: 4.6 Consensus size: 47
33397965 AAAAAATGTT
* * *
33397975 GTGCTAAGTGGATATACCACGATTACACATATTGATACATGTAACGTG
1 GTGCTAAGTGGATATGCCACGATTACACATATTGATTCAT-TAACATG
* * *
33398023 GTGCTAAGTGGATATGTCACGATTACATATATTGATTCATTAACGTG
1 GTGCTAAGTGGATATGCCACGATTACACATATTGATTCATTAACATG
* * *
33398070 GTGCTAAGTGGATATACCATG-GT-----TA---A-TCATGTAACATG
1 GTGCTAAGTGGATATGCCACGATTACACATATTGATTCAT-TAACATG
* *
33398108 GTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATG
1 GTGCTAAGTGGATATGCCACGATTACACATATTGATTCATTAACATG
* * *
33398155 GTGCTAAGTGGATATACCACGGTTAAACAT
1 GTGCTAAGTGGATATGCCACGATTACACAT
33398185 GTAACGTGGT
Statistics
Matches: 136, Mismatches: 15, Indels: 23
0.78 0.09 0.13
Matches are distributed among these distances:
37 4 0.03
38 26 0.19
39 1 0.01
41 2 0.01
44 2 0.01
46 1 0.01
47 60 0.44
48 40 0.29
ACGTcount: A:0.31, C:0.15, G:0.22, T:0.32
Consensus pattern (47 bp):
GTGCTAAGTGGATATGCCACGATTACACATATTGATTCATTAACATG
Found at i:33398119 original size:38 final size:38
Alignment explanation
Indices: 33398059--33398217 Score: 158
Period size: 38 Copynumber: 4.0 Consensus size: 38
33398049 ATATATTGAT
* *
33398059 TCAT-TAACGTGGTGCTAAGTGGATATACCATGGTTAA
1 TCATGTAACATGGTGCTAAGTGGATATACCACGGTTAA
*
33398096 TCATGTAACATGGTGCTAAGTGGATATGCCACGGTTACA
1 TCATGTAACATGGTGCTAAGTGGATATACCACGGTTA-A
*
33398135 TATATTGATTCATTAACATGGTGCTAAGTGGATATACCACGGTTAA
1 T-CA-TG------TAACATGGTGCTAAGTGGATATACCACGGTTAA
* * * *
33398181 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTA
1 TCATGTAACATGGTGCTAAGTGGATATACCACGGTTA
33398218 TACATGTTAA
Statistics
Matches: 102, Mismatches: 10, Indels: 19
0.78 0.08 0.15
Matches are distributed among these distances:
37 4 0.04
38 58 0.57
39 2 0.02
40 1 0.01
41 2 0.02
44 2 0.02
45 1 0.01
46 1 0.01
47 31 0.30
ACGTcount: A:0.30, C:0.15, G:0.24, T:0.31
Consensus pattern (38 bp):
TCATGTAACATGGTGCTAAGTGGATATACCACGGTTAA
Found at i:33398157 original size:85 final size:85
Alignment explanation
Indices: 33398011--33398217 Score: 351
Period size: 85 Copynumber: 2.4 Consensus size: 85
33398001 ACATATTGAT
* * *
33398011 ACATGTAACGTGGTGCTAAGTGGATATGTCACGATTACATATATTGATTCATTAACGTGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
*
33398076 AGTGGATATACCATGGTTAA
66 AGTGGATATACCACGGTTAA
* *
33398096 TCATGTAACATGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
33398161 AGTGGATATACCACGGTTAA
66 AGTGGATATACCACGGTTAA
*
33398181 ACATGTAACGTGGTGCTAAGTGGATATGCCACAGTTA
1 ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTA
33398218 TACATGTTAA
Statistics
Matches: 113, Mismatches: 9, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
85 113 1.00
ACGTcount: A:0.30, C:0.14, G:0.24, T:0.31
Consensus pattern (85 bp):
ACATGTAACGTGGTGCTAAGTGGATATGCCACGGTTACATATATTGATTCATTAACATGGTGCTA
AGTGGATATACCACGGTTAA
Found at i:33402091 original size:27 final size:27
Alignment explanation
Indices: 33402023--33402103 Score: 85
Period size: 27 Copynumber: 3.0 Consensus size: 27
33402013 CTATTTTGCA
* *
33402023 AAATTTAAATTCCTAATTATCTTATCT
1 AAATTTAAACTCCTAATTATCTAATCT
*
33402050 AAATTAAAACT-CTAATTATCCTAAT-T
1 AAATTTAAACTCCTAATTAT-CTAATCT
** *
33402076 TGATTTAAACTCCTAATTATTTAATCT
1 AAATTTAAACTCCTAATTATCTAATCT
33402103 A
1 A
33402104 CATAAAATCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 21 0.49
27 22 0.51
ACGTcount: A:0.40, C:0.15, G:0.01, T:0.44
Consensus pattern (27 bp):
AAATTTAAACTCCTAATTATCTAATCT
Found at i:33402100 original size:26 final size:28
Alignment explanation
Indices: 33402023--33402103 Score: 89
Period size: 26 Copynumber: 3.0 Consensus size: 28
33402013 CTATTTTGCA
*
33402023 AAATTTAAATTCCTAATTATCTT-ATCT
1 AAATTTAAACTCCTAATTATCTTAATCT
* *
33402050 AAATTAAAACT-CTAATTATCCTAAT-T
1 AAATTTAAACTCCTAATTATCTTAATCT
**
33402076 TGATTTAAACTCCTAATTAT-TTAATCT
1 AAATTTAAACTCCTAATTATCTTAATCT
33402103 A
1 A
33402104 CATAAAATCT
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
26 23 0.53
27 20 0.47
ACGTcount: A:0.40, C:0.15, G:0.01, T:0.44
Consensus pattern (28 bp):
AAATTTAAACTCCTAATTATCTTAATCT
Found at i:33405230 original size:17 final size:17
Alignment explanation
Indices: 33405208--33405242 Score: 61
Period size: 17 Copynumber: 2.1 Consensus size: 17
33405198 GGTTCAATCG
*
33405208 ATTTCCAATGCAATTCA
1 ATTTCCAATCCAATTCA
33405225 ATTTCCAATCCAATTCA
1 ATTTCCAATCCAATTCA
33405242 A
1 A
33405243 ATATGATGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.37, C:0.26, G:0.03, T:0.34
Consensus pattern (17 bp):
ATTTCCAATCCAATTCA
Found at i:33409805 original size:6 final size:6
Alignment explanation
Indices: 33409794--33409837 Score: 61
Period size: 6 Copynumber: 7.3 Consensus size: 6
33409784 GTTTGACAGG
* * *
33409794 GAGTAT GAGTAT GAGTAT GAGTAT GAGCAT GAGCAT GAGCAT GA
1 GAGTAT GAGTAT GAGTAT GAGTAT GAGTAT GAGTAT GAGTAT GA
33409838 AAGGAAGGGT
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
6 37 1.00
ACGTcount: A:0.34, C:0.07, G:0.34, T:0.25
Consensus pattern (6 bp):
GAGTAT
Found at i:33415701 original size:11 final size:11
Alignment explanation
Indices: 33415685--33415760 Score: 58
Period size: 10 Copynumber: 7.5 Consensus size: 11
33415675 TTATATTATT
33415685 TAATTTTCTAA
1 TAATTTTCTAA
*
33415696 TAA-TTTAT-A
1 TAATTTTCTAA
* *
33415705 TAATTTTTTTA
1 TAATTTTCTAA
33415716 TAATTTTCTAA
1 TAATTTTCTAA
33415727 -AATTTT-T-A
1 TAATTTTCTAA
*
33415735 TAATGATT-TAA
1 TAAT-TTTCTAA
33415746 TAA-TTTCTAA
1 TAATTTTCTAA
33415756 TAATT
1 TAATT
33415761 AAAAAAAATT
Statistics
Matches: 52, Mismatches: 6, Indels: 14
0.72 0.08 0.19
Matches are distributed among these distances:
8 1 0.02
9 10 0.19
10 23 0.44
11 18 0.35
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.57
Consensus pattern (11 bp):
TAATTTTCTAA
Found at i:33415708 original size:20 final size:20
Alignment explanation
Indices: 33415680--33415760 Score: 67
Period size: 20 Copynumber: 4.0 Consensus size: 20
33415670 AAATTTTATA
*
33415680 TTATTTAATTTTCTAATAAT
1 TTATATAATTTTCTAATAAT
* *
33415700 TTATATAATTTTTTTATAATT
1 TTATATAATTTTCTAATAA-T
* * * *
33415721 TTCTAAAATTTTTATAATGAT
1 TTATATAA-TTTTCTAATAAT
33415742 TTA-ATAA-TTTCTAATAAT
1 TTATATAATTTTCTAATAAT
33415760 T
1 T
33415761 AAAAAAAATT
Statistics
Matches: 47, Mismatches: 12, Indels: 6
0.72 0.18 0.09
Matches are distributed among these distances:
18 10 0.21
20 19 0.40
21 10 0.21
22 8 0.17
ACGTcount: A:0.37, C:0.04, G:0.01, T:0.58
Consensus pattern (20 bp):
TTATATAATTTTCTAATAAT
Found at i:33415737 original size:30 final size:31
Alignment explanation
Indices: 33415685--33415760 Score: 102
Period size: 30 Copynumber: 2.5 Consensus size: 31
33415675 TTATATTATT
** *
33415685 TAATTTTCTAATAATTTATATAATTTTTTTA
1 TAATTTTCTAATAATTTATATAATGATTTAA
*
33415716 TAATTTTCTAA-AATTTTTATAATGATTTAA
1 TAATTTTCTAATAATTTATATAATGATTTAA
33415746 TAA-TTTCTAATAATT
1 TAATTTTCTAATAATT
33415761 AAAAAAAATT
Statistics
Matches: 40, Mismatches: 4, Indels: 3
0.85 0.09 0.06
Matches are distributed among these distances:
29 7 0.17
30 22 0.55
31 11 0.28
ACGTcount: A:0.38, C:0.04, G:0.01, T:0.57
Consensus pattern (31 bp):
TAATTTTCTAATAATTTATATAATGATTTAA
Found at i:33419162 original size:48 final size:48
Alignment explanation
Indices: 33419032--33419219 Score: 137
Period size: 48 Copynumber: 3.9 Consensus size: 48
33419022 ACTTAGGAGT
* * * **
33419032 CTCGCACACTAAGTGCTC-ATATCATGGCCCGAAGCCAACTCAAT-GTG
1 CTCGCACCCGAAGTGC-CAATATCATGGCCCGAAGCCAAATCAATAAAG
* * * * * * *
33419079 TTTCGTACCCAAAGTGCTAATTTAATAGCCCGAAGCCAAATCAATAAAG
1 -CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
* ** * * ***
33419128 CTTGCACTTGAAGTGCCGATATCATGGCCTGAAGCCAAATTGGTAAAG
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
* * *
33419176 CTCGCACCCGAAGTGCTAATATCATGGCCCAAATCCAAATCAAT
1 CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAAT
33419220 GAATTTCCTA
Statistics
Matches: 101, Mismatches: 37, Indels: 4
0.71 0.26 0.03
Matches are distributed among these distances:
48 100 0.99
49 1 0.01
ACGTcount: A:0.32, C:0.27, G:0.18, T:0.23
Consensus pattern (48 bp):
CTCGCACCCGAAGTGCCAATATCATGGCCCGAAGCCAAATCAATAAAG
Found at i:33422760 original size:17 final size:17
Alignment explanation
Indices: 33422700--33422903 Score: 154
Period size: 17 Copynumber: 12.3 Consensus size: 17
33422690 AAAGTTTTTT
*
33422700 TTTTTAAAAACACGAGAA
1 TTTTT-AAAACACGAAAA
*
33422718 TTTTT-AAACACGGAAA
1 TTTTTAAAACACGAAAA
*
33422734 -TTTCAGAAACACGAAAA
1 TTTTTA-AAACACGAAAA
* *
33422751 TTTTTAAAACACGACAT
1 TTTTTAAAACACGAAAA
* *
33422768 TTTTTGAAACACGAGAA
1 TTTTTAAAACACGAAAA
* * *
33422785 TTTTTAAAACAAGACAT
1 TTTTTAAAACACGAAAA
* **
33422802 TTTTTGAAACAC-AATT
1 TTTTTAAAACACGAAAA
**
33422818 TTTTTCTTAA-A--AAAA
1 TTTTT-AAAACACGAAAA
* *
33422833 --TTTAAAATACGAGAA
1 TTTTTAAAACACGAAAA
33422848 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAAAA
33422865 TTTTTAAAACACGAAAA
1 TTTTTAAAACACGAAAA
* *
33422882 TTTTTGAAACACGGAAA
1 TTTTTAAAACACGAAAA
33422899 TTTTT
1 TTTTT
33422904 TAGAAAACGA
Statistics
Matches: 148, Mismatches: 29, Indels: 19
0.76 0.15 0.10
Matches are distributed among these distances:
12 2 0.01
13 4 0.03
15 8 0.05
16 17 0.11
17 108 0.73
18 9 0.06
ACGTcount: A:0.46, C:0.12, G:0.09, T:0.33
Consensus pattern (17 bp):
TTTTTAAAACACGAAAA
Found at i:33423506 original size:25 final size:26
Alignment explanation
Indices: 33423456--33423507 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 26
33423446 TATTTTTTTA
*
33423456 TTTTTTTTCTTTCCCCTCTTTTTTCT
1 TTTTTTTTCTTTCCCCTCTTTCTTCT
**
33423482 TTTTTTTTCTTTCTTCTC-TTCTTCT
1 TTTTTTTTCTTTCCCCTCTTTCTTCT
33423507 T
1 T
33423508 CCTTCCCTCT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
25 7 0.30
26 16 0.70
ACGTcount: A:0.00, C:0.25, G:0.00, T:0.75
Consensus pattern (26 bp):
TTTTTTTTCTTTCCCCTCTTTCTTCT
Found at i:33423903 original size:29 final size:29
Alignment explanation
Indices: 33423870--33423986 Score: 94
Period size: 30 Copynumber: 3.9 Consensus size: 29
33423860 TGTAATTTTT
*
33423870 AGAAAATTTAGGATTAAAATGAAATTTAA
1 AGAAAATTTAGGGTTAAAATGAAATTTAA
* * *
33423899 TGAAAGTTTAGGGGTCT-AATTGAAATTTAA
1 AGAAAATTTA-GGGT-TAAAATGAAATTTAA
* *
33423929 AGAAAGTTTAAGGGTCAAAATGAAATTT-A
1 AGAAAATTT-AGGGTTAAAATGAAATTTAA
* * *
33423958 GGAAAAGTTTAGGGGTCAAAATGCAATTT
1 AGAAAA-TTTA-GGGTTAAAATGAAATTT
33423987 TTATTTTTAA
Statistics
Matches: 72, Mismatches: 10, Indels: 11
0.77 0.11 0.12
Matches are distributed among these distances:
29 14 0.19
30 56 0.78
31 2 0.03
ACGTcount: A:0.44, C:0.03, G:0.21, T:0.31
Consensus pattern (29 bp):
AGAAAATTTAGGGTTAAAATGAAATTTAA
Found at i:33423925 original size:30 final size:30
Alignment explanation
Indices: 33423885--33423986 Score: 134
Period size: 30 Copynumber: 3.4 Consensus size: 30
33423875 ATTTAGGATT
*
33423885 AAAATGAAATTTAATGAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
* * *
33423915 TAATTGAAATTTAAAGAAAGTTTAAGGGTC
1 AAAATGAAATTTAAAGAAAGTTTAGGGGTC
*
33423945 AAAATGAAATTT-AGGAAAAGTTTAGGGGTC
1 AAAATGAAATTTAAAG-AAAGTTTAGGGGTC
*
33423975 AAAATGCAATTT
1 AAAATGAAATTT
33423987 TTATTTTTAA
Statistics
Matches: 62, Mismatches: 9, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
29 2 0.03
30 60 0.97
ACGTcount: A:0.44, C:0.04, G:0.22, T:0.30
Consensus pattern (30 bp):
AAAATGAAATTTAAAGAAAGTTTAGGGGTC
Found at i:33424007 original size:14 final size:15
Alignment explanation
Indices: 33423982--33424016 Score: 54
Period size: 14 Copynumber: 2.4 Consensus size: 15
33423972 GTCAAAATGC
33423982 AATTTTTATTTTTAA
1 AATTTTTATTTTTAA
*
33423997 AATTTTT-TTTTTGA
1 AATTTTTATTTTTAA
33424011 AATTTT
1 AATTTT
33424017 GAAAATTAAA
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
14 12 0.63
15 7 0.37
ACGTcount: A:0.29, C:0.00, G:0.03, T:0.69
Consensus pattern (15 bp):
AATTTTTATTTTTAA
Found at i:33424444 original size:54 final size:55
Alignment explanation
Indices: 33424258--33424475 Score: 315
Period size: 54 Copynumber: 4.1 Consensus size: 55
33424248 CACGTGAGCC
* *
33424258 AAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTTG-AAAACAGAATTTGCAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTG-AA
*
33424313 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTGAAAAATAG--A---AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTGAAAAACAGAAATTGAA
* *
33424364 AAGGCTCAACTCACCTCTCGCAATATGAGTTGGTTTTTGAAAAATAGAAATT-AA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
*
33424418 AAGGCTCAACTCACCTCTCACAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
1 AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
33424473 AAG
1 AAG
33424476 TAGAAATTGA
Statistics
Matches: 149, Mismatches: 7, Indels: 14
0.88 0.04 0.08
Matches are distributed among these distances:
50 14 0.09
51 34 0.23
52 1 0.01
54 51 0.34
55 37 0.25
56 6 0.04
57 6 0.04
ACGTcount: A:0.38, C:0.17, G:0.16, T:0.29
Consensus pattern (55 bp):
AAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAA
Found at i:33424473 original size:14 final size:14
Alignment explanation
Indices: 33424454--33424488 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
33424444 GAGTTGATTT
33424454 TTGAAAAACAGAAA
1 TTGAAAAACAGAAA
**
33424468 TTGAAAAGTAGAAA
1 TTGAAAAACAGAAA
33424482 TTGAAAA
1 TTGAAAA
33424489 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.60, C:0.03, G:0.17, T:0.20
Consensus pattern (14 bp):
TTGAAAAACAGAAA
Found at i:33424722 original size:85 final size:87
Alignment explanation
Indices: 33424578--33424825 Score: 299
Period size: 85 Copynumber: 2.8 Consensus size: 87
33424568 AGCAGAAATT
* * *
33424578 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
33424643 TTGATTTGAAAAG-TAGAATT-AG
65 TTGATTTGAAAAGATAG-ATTGAA
* ** * *
33424665 TAAAGTAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
33424728 TTGATTTTTGAAAAGCATAGATTGAA
65 TTGA--TTTGAAAAG-ATAGATTGAA
*
33424754 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
33424818 GTTGATTT
64 GTTGATTT
33424826 TTGAAAAACA
Statistics
Matches: 136, Mismatches: 15, Indels: 18
0.80 0.09 0.11
Matches are distributed among these distances:
84 3 0.02
85 33 0.24
87 31 0.23
88 3 0.02
89 30 0.22
91 33 0.24
93 3 0.02
ACGTcount: A:0.36, C:0.19, G:0.19, T:0.27
Consensus pattern (87 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTGAAAAGATAGATTGAA
Found at i:33424771 original size:15 final size:16
Alignment explanation
Indices: 33424738--33424771 Score: 50
Period size: 16 Copynumber: 2.1 Consensus size: 16
33424728 TTGATTTTTG
* *
33424738 AAAAGCATAGATTGAA
1 AAAAACATAAATTGAA
33424754 AAAAACATAAATTGAA
1 AAAAACATAAATTGAA
33424770 AA
1 AA
33424772 TACCTCAGCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.65, C:0.06, G:0.12, T:0.18
Consensus pattern (16 bp):
AAAAACATAAATTGAA
Found at i:33424813 original size:91 final size:88
Alignment explanation
Indices: 33424578--33424832 Score: 315
Period size: 91 Copynumber: 2.9 Consensus size: 88
33424568 AGCAGAAATT
* * *
33424578 AAAAACAGAATTTGAAAAGACCTCAGCGTGTGGCCTGAGACTCAACTCACCTCTTGCAATATGAG
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAG
*
33424643 TTGA--TTTGAAAAGTAGAATTAG
65 TTGATTTTTGAAAAGTAGAATTAA
* ** * *
33424665 TAAAGTAGAAATTGAAAATACCTCAGC-GT-GCCTTGAGGCTCAACTCACCTCTCGCAATATAAG
1 AAAAACAGAAATTGAAAATACCTCAGCTGTGGCC-TGAGGCTCAACTCACCTCTTGCAATATGAG
33424728 TTGATTTTTGAAAAGCATAG-ATTGAA
65 TTGATTTTTGAAAAG--TAGAATT-AA
*
33424754 AAAAACATAAATTGAAAATACCTCAGCATGTGAGCC-GAGGCTCAACTCACCTCTTGCAATATGA
1 AAAAACAGAAATTGAAAATACCTCAGC-TGTG-GCCTGAGGCTCAACTCACCTCTTGCAATATGA
33424818 GTTGATTTTTGAAAA
64 GTTGATTTTTGAAAA
33424833 ACAAAAATTA
Statistics
Matches: 143, Mismatches: 15, Indels: 16
0.82 0.09 0.09
Matches are distributed among these distances:
84 3 0.02
85 33 0.23
87 31 0.22
88 3 0.02
89 27 0.19
91 43 0.30
93 3 0.02
ACGTcount: A:0.37, C:0.18, G:0.18, T:0.27
Consensus pattern (88 bp):
AAAAACAGAAATTGAAAATACCTCAGCTGTGGCCTGAGGCTCAACTCACCTCTTGCAATATGAGT
TGATTTTTGAAAAGTAGAATTAA
Found at i:33424976 original size:123 final size:123
Alignment explanation
Indices: 33424755--33425073 Score: 523
Period size: 123 Copynumber: 2.6 Consensus size: 123
33424745 TAGATTGAAA
* * * ** * *
33424755 AAAACATAAATTGAAAATACCTCAGCATGTGAGCCGAGGCTCAACTCACCTCTTGCAATATGAGT
1 AAAACATAAACTAAAAATACCTCGGC--GTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGT
33424820 TGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
64 TGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
33424880 AAAACATAAACTAAAAATACCTCGGCGTGCCCC-ACGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAAACATAAACTAAAAATACCTCGGCGTGCCCCGA-GGCTCAACTCACTTCTCGCAATATGAGTT
33424944 GATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
65 GATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
*
33425003 AAAACATAAACTAAAAATACCTTGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
1 AAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
33425068 ATTTTT
66 ATTTTT
33425074 TTTAAAAAAT
Statistics
Matches: 182, Mismatches: 10, Indels: 6
0.92 0.05 0.03
Matches are distributed among these distances:
122 1 0.01
123 157 0.86
124 1 0.01
125 23 0.13
ACGTcount: A:0.37, C:0.22, G:0.14, T:0.27
Consensus pattern (123 bp):
AAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACTCACTTCTCGCAATATGAGTTG
ATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCACCTCTCGCAATATGAGTCAATTT
Found at i:33425600 original size:193 final size:193
Alignment explanation
Indices: 33424915--33425723 Score: 1539
Period size: 194 Copynumber: 4.2 Consensus size: 193
33424905 CGTGCCCCAC
*
33424915 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAAC-AAAAATTAAAAGGCTTAACTC
1 GGCTCAACTCATTTCTCTCAATATGAGTTGA-TTTTGAAAAACAAAAAATTAAAAGGCTTAACTC
*
33424979 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTTGGCGTGCCCCGAGGCTCA
65 ACCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCA
33425044 ACTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
130 ACTCACTTCTCGCAATATGAGTTGA-TTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
33425109 GGCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
1 GGCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
33425174 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
66 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
33425239 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTTGA
131 CTCACTTCTCGCAATATGAGTTGATTTTTTT-AAAAAATTTAAAAATACCTCAACGTGTCTTGA
33425303 GGCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
1 GGCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
33425368 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
66 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
33425433 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
131 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
*
33425496 GTCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
1 GGCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
33425561 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
66 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
*
33425626 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCACAACGTGTCTTGA
131 CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
*
33425689 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 GGCTCAACTCATTTCTCTCAATATGAGTTGATTTT
33425724 CCTTGGAAAG
Statistics
Matches: 607, Mismatches: 6, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
193 274 0.45
194 333 0.55
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.31
Consensus pattern (193 bp):
GGCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
CTCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGA
Found at i:33425606 original size:387 final size:386
Alignment explanation
Indices: 33424915--33425723 Score: 1548
Period size: 387 Copynumber: 2.1 Consensus size: 386
33424905 CGTGCCCCAC
33424915 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTTGAAAAACAAAAATTAAAAGGCTTAACTCA
1 GGCTCAACTCATTTCTCGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGGCTTAACTCA
*
33424980 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTTGGCGTGCCCCGAGGCTCAA
65 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
33425045 CTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
130 CTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
33425110 GCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCAC
195 GCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCAC
33425175 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
260 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
*
33425240 TCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAAATTTAAAAATACCTCAACGTGTCTTGA
325 TCACTTCTCGCAATATGAGTTGATTTTTTT-AAAAAATTTAAAAATACCACAACGTGTCTTGA
*
33425303 GGCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCA
1 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAAC-AAAAATTAAAAGGCTTAACTCA
33425368 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
65 CCTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAA
33425433 CTCACTTCTCGCAATATGAGTTGA-TTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
130 CTCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAG
*
33425497 TCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCAC
195 GCTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCAC
33425562 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
260 CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
33425627 TCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCACAACGTGTCTTGA
325 TCACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCACAACGTGTCTTGA
33425689 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
1 GGCTCAACTCATTTCTCGCAATATGAGTTGATTTT
33425724 CCTTGGAAAG
Statistics
Matches: 415, Mismatches: 5, Indels: 4
0.98 0.01 0.01
Matches are distributed among these distances:
386 65 0.16
387 210 0.51
388 140 0.34
ACGTcount: A:0.36, C:0.21, G:0.13, T:0.31
Consensus pattern (386 bp):
GGCTCAACTCATTTCTCGCAATATGAGTTGATTTTGAAAAACAAAAATTAAAAGGCTTAACTCAC
CTCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAAC
TCACTTCTCGCAATATGAGTTGATTTTTTTTAAAAAATTTAAAAATACCTCAACGTGTCTTGAGG
CTCAACTCATTTCTCTCAATATGAGTTGATTTTGAAAAACAAAAAATTAAAAGGCTTAACTCACC
TCTCGCAATATGAGTCAATTTAAAACATAAACTAAAAATACCTCGGCGTGCCCCGAGGCTCAACT
CACTTCTCGCAATATGAGTTGATTTTTTTAAAAAATTTAAAAATACCACAACGTGTCTTGA
Found at i:33434118 original size:44 final size:45
Alignment explanation
Indices: 33434046--33434342 Score: 161
Period size: 44 Copynumber: 6.8 Consensus size: 45
33434036 ATCTGATGTG
* *
33434046 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTATTATTTCA
** * * *
33434090 ATCCGCTCCACTGTAACTTCAGAGAGATAGGAT--TACTAGCTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTATTA-TTTCA
* * ***
33434134 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGAT-CTCTGGCTTCA
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCCTATTATTTCA
* * * * *
33434178 ATCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATT-CTTCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCT---ATTATTTCA
* * * * * * * *
33434224 GTCTACTCCCCTGTAACCTCAGGGTGATAAGA-CC--TGA-TGCG
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTATTATTTCA
** *
33434265 ATCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATTTTA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTATTATTTCA
** * *
33434309 ATCCGCTCCACTGTAA-TCTCAGGGAGATAGGATC
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATC
33434343 TGAAATTCTT
Statistics
Matches: 195, Mismatches: 44, Indels: 28
0.73 0.16 0.10
Matches are distributed among these distances:
41 30 0.15
42 3 0.02
43 6 0.03
44 121 0.62
45 1 0.01
46 33 0.17
47 1 0.01
ACGTcount: A:0.28, C:0.24, G:0.18, T:0.30
Consensus pattern (45 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTATTATTTCA
Found at i:33434205 original size:88 final size:88
Alignment explanation
Indices: 33434046--33434206 Score: 209
Period size: 88 Copynumber: 1.8 Consensus size: 88
33434036 ATCTGATGTG
* * * * *
33434046 ATCTACTCTACTGTAACTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAACTTCA
1 ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCA
33434111 GAGAGATAGGATTACTAGCTTCA
66 GAGAGATAGGATTACTAGCTTCA
* * *
33434134 ATCTACTCCGCTGTAA-TCTCAGAGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTAACCT
1 ATCTACTCCACTGTAACT-TCAGAGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCT
*
33434197 CAGGGAGATA
64 CAGAGAGATA
33434207 AGATCTGAAA
Statistics
Matches: 62, Mismatches: 9, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
87 3 0.05
88 59 0.95
ACGTcount: A:0.29, C:0.24, G:0.17, T:0.30
Consensus pattern (88 bp):
ATCTACTCCACTGTAACTTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCA
GAGAGATAGGATTACTAGCTTCA
Found at i:33434245 original size:46 final size:46
Alignment explanation
Indices: 33434179--33434432 Score: 218
Period size: 46 Copynumber: 5.7 Consensus size: 46
33434169 CTGGCTTCAA
33434179 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* * * * * *
33434225 TCTACTCCCCTGTAACCTCAGGGTGATAAGACCTG--A---TGCGA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* ** * * ** **
33434266 TCTACTCTGCTGTAACTTCAGAGAGATAAGATCCT-TTATT-TT-AA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGAT-CTGAAATTCTTCGG
* * * *
33434310 TCCGCTCCACTGTAATCTCAGGGAGATAGGATCTGAAATTCTTTGG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* * * *
33434356 TCTGTTCCACTGTAATCTCAGGGAGATAGGATCTGAAATTCTTTGG
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
* *
33434402 TCTGTTCCACTGTAATCTCAGGGAGATAAGA
1 TCTGCTCCACTGTAACCTCAGGGAGATAAGA
33434433 CCTGTATAAT
Statistics
Matches: 171, Mismatches: 29, Indels: 16
0.79 0.13 0.07
Matches are distributed among these distances:
41 29 0.17
42 2 0.01
43 3 0.02
44 29 0.17
45 3 0.02
46 105 0.61
ACGTcount: A:0.26, C:0.22, G:0.21, T:0.31
Consensus pattern (46 bp):
TCTGCTCCACTGTAACCTCAGGGAGATAAGATCTGAAATTCTTCGG
Found at i:33434290 original size:131 final size:131
Alignment explanation
Indices: 33434134--33434383 Score: 342
Period size: 131 Copynumber: 1.9 Consensus size: 131
33434124 ACTAGCTTCA
* *
33434134 ATCTACTCCGCTGTAATCTCAGAGAGATAAGAT-CTCTGGCTTCAATCTGCTCCACTGTAACCTC
1 ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCCT-TGACTTCAATCCGCTCCACTGTAACCTC
* *
33434198 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCCCTGTAACCTCAGGGTGATAAGACCTGATG
65 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATG
33434263 CG
130 CG
* * * * *
33434265 ATCTACTCTGCTGTAA-CTTCAGAGAGATAAGATCCTTTATTTTAATCCGCTCCACTGTAATCTC
1 ATCTACTCCGCTGTAATC-TCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTC
* * ** *
33434329 AGGGAGATAGGATCTGAAATTCTTTGGTCTGTTCCACTGTAATCTCAGGGAGATA
65 AGGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATA
33434384 GGATCTGAAA
Statistics
Matches: 103, Mismatches: 14, Indels: 4
0.85 0.12 0.03
Matches are distributed among these distances:
130 1 0.01
131 100 0.97
132 2 0.02
ACGTcount: A:0.26, C:0.23, G:0.20, T:0.30
Consensus pattern (131 bp):
ATCTACTCCGCTGTAATCTCAGAGAGATAAGATCCTTGACTTCAATCCGCTCCACTGTAACCTCA
GGGAGATAAGATCTGAAATTCTTCGGTCTACTCCACTGTAACCTCAGGGAGATAAGACCTGATGC
G
Found at i:33448182 original size:34 final size:35
Alignment explanation
Indices: 33448143--33448274 Score: 140
Period size: 35 Copynumber: 3.8 Consensus size: 35
33448133 AAAGGCATGG
* * * * *
33448143 TGGTGGTAGACGGTATGGGGGTGTGTGA-TGGTGC
1 TGGTGGCAGACAGCATGGGGGAGTGGGAGTGGTGC
*
33448177 TGGTGGCAGACAGCATGGGTGAGTGGGAGTGGTGC
1 TGGTGGCAGACAGCATGGGGGAGTGGGAGTGGTGC
** * *
33448212 TGGTGGCAGACAATATGGGAGAATGGGAGTGGTGC
1 TGGTGGCAGACAGCATGGGGGAGTGGGAGTGGTGC
* * *
33448247 TGGTGGCAGACAACATGGGAGAATGGGA
1 TGGTGGCAGACAGCATGGGGGAGTGGGA
33448275 AGAGGCAAGT
Statistics
Matches: 86, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
34 22 0.26
35 64 0.74
ACGTcount: A:0.21, C:0.09, G:0.48, T:0.21
Consensus pattern (35 bp):
TGGTGGCAGACAGCATGGGGGAGTGGGAGTGGTGC
Found at i:33448216 original size:35 final size:35
Alignment explanation
Indices: 33448171--33448274 Score: 172
Period size: 35 Copynumber: 3.0 Consensus size: 35
33448161 GGGTGTGTGA
* * *
33448171 TGGTGCTGGTGGCAGACAGCATGGGTGAGTGGGAG
1 TGGTGCTGGTGGCAGACAACATGGGAGAATGGGAG
*
33448206 TGGTGCTGGTGGCAGACAATATGGGAGAATGGGAG
1 TGGTGCTGGTGGCAGACAACATGGGAGAATGGGAG
33448241 TGGTGCTGGTGGCAGACAACATGGGAGAATGGGA
1 TGGTGCTGGTGGCAGACAACATGGGAGAATGGGA
33448275 AGAGGCAAGT
Statistics
Matches: 64, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
35 64 1.00
ACGTcount: A:0.23, C:0.11, G:0.47, T:0.19
Consensus pattern (35 bp):
TGGTGCTGGTGGCAGACAACATGGGAGAATGGGAG
Found at i:33453687 original size:22 final size:22
Alignment explanation
Indices: 33453662--33453706 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
33453652 TTTAATAAAG
33453662 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
33453684 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
33453706 A
1 A
33453707 CACTCCCCCT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:33457463 original size:22 final size:22
Alignment explanation
Indices: 33457438--33457482 Score: 72
Period size: 22 Copynumber: 2.0 Consensus size: 22
33457428 TTTAATAAAG
33457438 AAAATATCTACAAAATATTCCT
1 AAAATATCTACAAAATATTCCT
* *
33457460 AAAATATTTACAGAATATTCCT
1 AAAATATCTACAAAATATTCCT
33457482 A
1 A
33457483 CACATACACT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33
Consensus pattern (22 bp):
AAAATATCTACAAAATATTCCT
Found at i:33460751 original size:18 final size:18
Alignment explanation
Indices: 33460730--33460765 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
33460720 AAATTTAAAT
33460730 TTCAAAAAAATAGAAAAG
1 TTCAAAAAAATAGAAAAG
*
33460748 TTCATAAAAATAGAAAAG
1 TTCAAAAAAATAGAAAAG
33460766 AAAAAAAGAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.64, C:0.06, G:0.11, T:0.19
Consensus pattern (18 bp):
TTCAAAAAAATAGAAAAG
Found at i:33464028 original size:17 final size:17
Alignment explanation
Indices: 33463998--33464030 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
33463988 TAAAAGCATA
33463998 ATAAAATAATAAAAAAT
1 ATAAAATAATAAAAAAT
33464015 ATAAATATAA-AAAAAA
1 ATAAA-ATAATAAAAAA
33464031 CACATCAATT
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 11 0.73
18 4 0.27
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (17 bp):
ATAAAATAATAAAAAAT
Found at i:33464314 original size:23 final size:20
Alignment explanation
Indices: 33464262--33464317 Score: 58
Period size: 23 Copynumber: 2.5 Consensus size: 20
33464252 ATTTTTTTAT
33464262 TTTTATTTAAAAAATATAAAA
1 TTTTA-TTAAAAAATATAAAA
*
33464283 TATTAATTAAAAATATACTAAATA
1 T-TTTATTAAAAA-ATA-TAAA-A
33464307 TTTTATTAAAA
1 TTTTATTAAAA
33464318 TTTAATAACA
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
21 8 0.28
22 6 0.21
23 13 0.45
24 2 0.07
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (20 bp):
TTTTATTAAAAAATATAAAA
Found at i:33464318 original size:22 final size:20
Alignment explanation
Indices: 33464262--33464318 Score: 51
Period size: 22 Copynumber: 2.6 Consensus size: 20
33464252 ATTTTTTTAT
*
33464262 TTTTATTTAAAAAATATAAAA
1 TTTTA-TTAAAATATATAAAA
*
33464283 TATTAATTAAAAATATACTAAATA
1 T-TTTATT-AAAATATA-TAAA-A
33464307 TTTTATTAAAAT
1 TTTTATTAAAAT
33464319 TTAATAACAA
Statistics
Matches: 29, Mismatches: 3, Indels: 7
0.74 0.08 0.18
Matches are distributed among these distances:
21 3 0.10
22 15 0.52
23 9 0.31
24 2 0.07
ACGTcount: A:0.54, C:0.02, G:0.00, T:0.44
Consensus pattern (20 bp):
TTTTATTAAAATATATAAAA
Found at i:33468154 original size:49 final size:46
Alignment explanation
Indices: 33468079--33468171 Score: 132
Period size: 49 Copynumber: 2.0 Consensus size: 46
33468069 ATGATTTTGT
*
33468079 CTTTTAACTTGACAAGTAAATATTTATCAAAACGACGTAGTTTTAC
1 CTTTTAACTTGAAAAGTAAATATTTATCAAAACGACGTAGTTTTAC
* *
33468125 CTTTTAACTTCAGAAAATGTAAATGTTTATCAAAACGATGTAGTTTT
1 CTTTTAACTT--GAAAA-GTAAATATTTATCAAAACGACGTAGTTTT
33468172 GCATTTTCTT
Statistics
Matches: 41, Mismatches: 3, Indels: 3
0.87 0.06 0.06
Matches are distributed among these distances:
46 10 0.24
48 4 0.10
49 27 0.66
ACGTcount: A:0.37, C:0.13, G:0.12, T:0.39
Consensus pattern (46 bp):
CTTTTAACTTGAAAAGTAAATATTTATCAAAACGACGTAGTTTTAC
Found at i:33473409 original size:54 final size:54
Alignment explanation
Indices: 33473339--33473446 Score: 153
Period size: 54 Copynumber: 2.0 Consensus size: 54
33473329 CCAAATTTTC
* * * * *
33473339 TTTCAAGTTAAGCTCGAGTTTTAATTTCTTACATTTAATTTTGCTTGATTACAT
1 TTTCAAGTTAAACTCGAGCTTTAATGTCTTAAATTTAATATTGCTTGATTACAT
* *
33473393 TTTCTAGTTAAACTCGAGCTTTAATGTCTTAAATTTAATATTGTTTGATTACAT
1 TTTCAAGTTAAACTCGAGCTTTAATGTCTTAAATTTAATATTGCTTGATTACAT
33473447 CTTTTGCATG
Statistics
Matches: 47, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
54 47 1.00
ACGTcount: A:0.28, C:0.12, G:0.11, T:0.49
Consensus pattern (54 bp):
TTTCAAGTTAAACTCGAGCTTTAATGTCTTAAATTTAATATTGCTTGATTACAT
Found at i:33474733 original size:23 final size:23
Alignment explanation
Indices: 33474689--33474733 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
33474679 GTGAAGTTCC
*
33474689 AAAACCCTAAAACATAATAACCA
1 AAAACCCTAAAACATAAAAACCA
33474712 AAAACCCTAAACACA-AAAAACC
1 AAAACCCTAAA-ACATAAAAACC
33474734 CCCTCCATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
23 17 0.85
24 3 0.15
ACGTcount: A:0.62, C:0.29, G:0.00, T:0.09
Consensus pattern (23 bp):
AAAACCCTAAAACATAAAAACCA
Found at i:33486162 original size:402 final size:401
Alignment explanation
Indices: 33485419--33486177 Score: 1473
Period size: 402 Copynumber: 1.9 Consensus size: 401
33485409 AAAAGTTTAG
*
33485419 TAAAAGTTTGAGGGAAAGTAAATAGGGGAGAGTAAAATTTTGGAGGGAAAATATTTAAAAAAAAT
1 TAAAAGTTTGAGGGAAAGTAAATAGGGGAGAGTAAAATTTTGGAGGGAAAATATTTAAAAAAAAA
33485484 TGGAGGGGGGAGGGCTTGGGGTAGATGAGAGGTGAGATGGGAAGAGAATAAAAGTTTTAGGGGAA
66 TGGAGGGGGGAGGGCTTGGGGTAGATGAGAGGTGAGATGGGAAGAGAATAAAAGTTTTAGGGGAA
33485549 AAGTGGGAGGGAGTAAAAATTTTGGGGAAAATAAAAGGTTTTAAGGGTTTTTGGGAGTAAAATTT
131 AAGTGGGAGGGAGTAAAAATTTTGGGGAAAATAAAAGGTTTTAAGGGTTTTTGGGAGTAAAATTT
33485614 TGAGAAAAAGTAAATGGGAGAGTAAAATTTTGGTGAGAAATGGATTTTGGGTAGATTGGGGGGTT
196 TGAGAAAAAGTAAATGGGAGAGTAAAATTTTGGTGAGAAATGGATTTTGGGTAGATTGGGGGGTT
33485679 GGGAGGGGAGGGGAGTAAAAGTTTTGGGAGAAAGTGGGAAGAAGTAAAAGTTTTGAGAGAAAAAT
261 GGGAGGGGAGGGGAGTAAAAGTTTTGGGAGAAAGTGGGAAGAAGTAAAAGTTTTGAGAGAAAAAT
33485744 AAAAAGGTTTGGGAGTTTAGGGTAAAAATGTATGAGAAGTAAAAGTTTAGGGGAAAAATAAAAAA
326 AAAAAGGTTTGGGAGTTTAGGGTAAAAATGTATGAGAAGTAAAAGTTTAGGGGAAAAATAAAAAA
33485809 GTTTTGAGGAA
391 GTTTTGAGGAA
33485820 TAAAAGTTTGAGGGAAAGTAAATAGGGGAGAGTAAAATTTTGGAGGGAAAATATTTAAAAAAAAA
1 TAAAAGTTTGAGGGAAAGTAAATAGGGGAGAGTAAAATTTTGGAGGGAAAATATTTAAAAAAAAA
33485885 TGGAGGGGGGAGGGCTTGGGGTAGATGAGAGGTGAGATGGGAAGAGAATAAAAGTTTTAGGGGAA
66 TGGAGGGGGGAGGGCTTGGGGTAGATGAGAGGTGAGATGGGAAGAGAATAAAAGTTTTAGGGGAA
33485950 AAGTGGGAGGGAGTAAAAATTTTGGGGGAAAATAAAAGGTTTTAAGGGTTTTTGGGAGTAAAATT
131 AAGTGGGAGGGAGTAAAAATTTT-GGGGAAAATAAAAGGTTTTAAGGGTTTTTGGGAGTAAAATT
* *
33486015 TTGAGAAAAAGTAAATGGGAGAGTAACATTTTGGTGGGAAATGGATTTTGGGTAGATTGGGGGGT
195 TTGAGAAAAAGTAAATGGGAGAGTAAAATTTTGGTGAGAAATGGATTTTGGGTAGATTGGGGGGT
*
33486080 TGGGAGGGGAGGGGAGTAAAAGTTTTGGGAGGAAGTGGGAAGAAGTAAAAGTTTTGAGAGAAAAA
260 TGGGAGGGGAGGGGAGTAAAAGTTTTGGGAGAAAGTGGGAAGAAGTAAAAGTTTTGAGAGAAAAA
33486145 TAAAAAGGTTTGGGAGTTTAGGGTAAAAATGTA
325 TAAAAAGGTTTGGGAGTTTAGGGTAAAAATGTA
33486178 AAATATTATA
Statistics
Matches: 353, Mismatches: 4, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
401 152 0.43
402 201 0.57
ACGTcount: A:0.39, C:0.00, G:0.36, T:0.24
Consensus pattern (401 bp):
TAAAAGTTTGAGGGAAAGTAAATAGGGGAGAGTAAAATTTTGGAGGGAAAATATTTAAAAAAAAA
TGGAGGGGGGAGGGCTTGGGGTAGATGAGAGGTGAGATGGGAAGAGAATAAAAGTTTTAGGGGAA
AAGTGGGAGGGAGTAAAAATTTTGGGGAAAATAAAAGGTTTTAAGGGTTTTTGGGAGTAAAATTT
TGAGAAAAAGTAAATGGGAGAGTAAAATTTTGGTGAGAAATGGATTTTGGGTAGATTGGGGGGTT
GGGAGGGGAGGGGAGTAAAAGTTTTGGGAGAAAGTGGGAAGAAGTAAAAGTTTTGAGAGAAAAAT
AAAAAGGTTTGGGAGTTTAGGGTAAAAATGTATGAGAAGTAAAAGTTTAGGGGAAAAATAAAAAA
GTTTTGAGGAA
Found at i:33486208 original size:9 final size:9
Alignment explanation
Indices: 33486194--33486230 Score: 65
Period size: 9 Copynumber: 4.1 Consensus size: 9
33486184 TATAGTTTGA
33486194 TATTCGAAT
1 TATTCGAAT
33486203 TATTCGAAT
1 TATTCGAAT
*
33486212 TATTCGAGT
1 TATTCGAAT
33486221 TATTCGAAT
1 TATTCGAAT
33486230 T
1 T
33486231 CGAAAACTCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
9 26 1.00
ACGTcount: A:0.30, C:0.11, G:0.14, T:0.46
Consensus pattern (9 bp):
TATTCGAAT
Found at i:33489182 original size:14 final size:14
Alignment explanation
Indices: 33489163--33489200 Score: 53
Period size: 12 Copynumber: 2.9 Consensus size: 14
33489153 TTTCATATAT
33489163 TATTTATTTTAAAC
1 TATTTATTTTAAAC
*
33489177 TATTTATTTT--AT
1 TATTTATTTTAAAC
33489189 TATTTATTTTAA
1 TATTTATTTTAA
33489201 GTTTTTTATA
Statistics
Matches: 21, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
12 11 0.52
14 10 0.48
ACGTcount: A:0.32, C:0.03, G:0.00, T:0.66
Consensus pattern (14 bp):
TATTTATTTTAAAC
Found at i:33489196 original size:26 final size:25
Alignment explanation
Indices: 33489134--33489242 Score: 110
Period size: 26 Copynumber: 4.2 Consensus size: 25
33489124 CTCTTTTATC
** *
33489134 ATTATTTATTTTAAGTTTTTTTCATAT
1 ATTATTTATTTTAA-ACTATTT-ATAT
*
33489161 ATTATTTATTTTAAACTATTTATTTT
1 ATTATTTATTTTAAACTATTTA-TAT
** *
33489187 ATTATTTATTTTAAGTTTTTTATAT
1 ATTATTTATTTTAAACTATTTATAT
*
33489212 ATTATTTATTTTAAACCATTATATAT
1 ATTATTTATTTTAAACTATT-TATAT
33489238 ATTAT
1 ATTAT
33489243 CTTTCAAATA
Statistics
Matches: 68, Mismatches: 12, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
25 19 0.28
26 35 0.51
27 14 0.21
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (25 bp):
ATTATTTATTTTAAACTATTTATAT
Found at i:33489241 original size:51 final size:53
Alignment explanation
Indices: 33489129--33489242 Score: 171
Period size: 51 Copynumber: 2.2 Consensus size: 53
33489119 AAAAGCTCTT
*
33489129 TTATCATTATTTATTTTAAGTTTTTTTCATATATTATTTATTTTAAACTATTTA
1 TTAT-ATTATTTATTTTAAGTTTTTTTCATATATTATTTATTTTAAACCATTTA
*
33489183 TTTTATTATTTATTTTAAG-TTTTTT-ATATATTATTTATTTTAAACCA-TTA
1 TTATATTATTTATTTTAAGTTTTTTTCATATATTATTTATTTTAAACCATTTA
33489233 TATATATTAT
1 T-TATATTAT
33489243 CTTTCAAATA
Statistics
Matches: 56, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
50 4 0.07
51 28 0.50
52 6 0.11
53 15 0.27
54 3 0.05
ACGTcount: A:0.31, C:0.04, G:0.02, T:0.63
Consensus pattern (53 bp):
TTATATTATTTATTTTAAGTTTTTTTCATATATTATTTATTTTAAACCATTTA
Found at i:33489242 original size:22 final size:21
Alignment explanation
Indices: 33489206--33489263 Score: 55
Period size: 22 Copynumber: 2.6 Consensus size: 21
33489196 TTTAAGTTTT
33489206 TTATATATTATTTAT-TTTAAACCA
1 TTATATA-TA-TTATCTTTAAA--A
*
33489230 TTATATATATTATCTTTCAAA
1 TTATATATATTATCTTTAAAA
33489251 TATATATATATTA
1 T-TATATATATTA
33489264 AAACTGTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 6
0.82 0.03 0.16
Matches are distributed among these distances:
21 2 0.06
22 15 0.48
23 7 0.23
24 7 0.23
ACGTcount: A:0.40, C:0.07, G:0.00, T:0.53
Consensus pattern (21 bp):
TTATATATATTATCTTTAAAA
Found at i:33489370 original size:25 final size:25
Alignment explanation
Indices: 33489127--33489371 Score: 96
Period size: 25 Copynumber: 9.6 Consensus size: 25
33489117 AAAAAAGCTC
* *
33489127 TTTTATCAT-TATTTATTTTAAGTT
1 TTTTATTATATATTTATTTTAAATT
*
33489151 TTTT-TCATATATTATTTATTTTAAACT
1 TTTTAT--TATA-TATTTATTTTAAATT
* * *
33489178 ATTTATTTTATTATTTATTTTAAGTT
1 TTTTATTATA-TATTTATTTTAAATT
*
33489204 TTTTA-TATATTATTTATTTTAAA-C
1 TTTTATTATA-TATTTATTTTAAATT
**
33489228 CATTA-TATATA-TTATCTTTCAAATAT
1 TTTTATTATATATTTAT-TTT-AAAT-T
* ** * *
33489254 ATATATATTA-A-AACTGTTTTATATGT
1 -T-TTTATTATATATTTATTTTAAAT-T
*
33489280 TATTTTTTATATTATTTATTTTAAATT
1 T-TTTATTATA-TATTTATTTTAAATT
* * *
33489307 GTTTTATTGT-TATTTATTTTTAGTT
1 -TTTTATTATATATTTATTTTAAATT
* * *
33489332 TTTTA-TATTTTATTTATTTGAAACT
1 TTTTATTA-TATATTTATTTTAAATT
33489357 TTTTATTATATATTT
1 TTTTATTATATATTT
33489372 TGAATTGTTA
Statistics
Matches: 164, Mismatches: 37, Indels: 39
0.68 0.15 0.16
Matches are distributed among these distances:
22 4 0.02
23 7 0.04
24 20 0.12
25 60 0.37
26 28 0.17
27 27 0.16
28 16 0.10
29 2 0.01
ACGTcount: A:0.29, C:0.04, G:0.03, T:0.64
Consensus pattern (25 bp):
TTTTATTATATATTTATTTTAAATT
Found at i:33495813 original size:92 final size:90
Alignment explanation
Indices: 33495526--33496096 Score: 323
Period size: 89 Copynumber: 6.3 Consensus size: 90
33495516 ATCTTATTTT
* * * **
33495526 CCTAAAGTTACAGTGGAACTGATTAAAGCTATAAATT-AGGATCTTATCTCTCTGAAGTTACAGT
1 CCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTCA--ATCTTATCTCTCTGAAGTTGTAGT
* * * *
33495590 AGAGCAAATCATAACAAACTTTATCTC
64 AGAGTAGATCATAGCAAACCTTATCTC
* * * * *
33495617 CCTGAAGTTGCAGTGGAGCATG-TTGAAG-T-T--ACT-AGTCTTATCTCAT-TGAAGTTGCAGT
1 CCTAAAGTTGCAGTGGAACA-GATTGAAGCTATAAATTCAATCTTATCTC-TCTGAAGTTGTAGT
** * * *
33495675 GAAGCAG-ACTGAAGATAGCGAATCTTATTTC
64 --AG-AGTA--GATCATAGCAAACCTTATCTC
* * *
33495706 CCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTGCGAATCTTATCTATCTGAAGTTGTAGT
1 CCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATT-C-AATCTTATCTCTCTGAAGTTGTAGT
33495771 AGAGTAGATCATAGCAAACCTTATCTC
64 AGAGTAGATCATAGCAAACCTTATCTC
* * * *
33495798 CTTAAAGTTGCAGTGGAGCAGGTTGAAG-T-T--A--CAAGTCTTATCTCCCTGAAGTTGTAGTA
1 CCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTCAA-TCTTATCTCTCTGAAGTTGTAGTA
* * ** * *
33495857 GAGCAGACTGAAGATAGTGAATCTTATTTC
65 GAGTAGA-T---CATAGCAAACCTTATCTC
* * * * * *
33495887 CCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTACAGATTTTATCTCTCTAAATTTGCAGT
1 CCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATT-CA-ATCTTATCTCTCTGAAGTTGTAGT
*
33495952 AGAGTAGATCATATCAAACCTTATCTC
64 AGAGTAGATCATAGCAAACCTTATCTC
* * * ** * * ** *
33495979 CCTAAAGTTACAGTGGAATAGGTT-AA-AAATAAA-CCAATCTTATCTCCCTGAAGTTACAGTGG
1 CCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTCAATCTTATCTCTCTGAAGTTGTAGTAG
* * *
33496041 AGCAGATTAAAGGCACAAACCTTATCTC
66 AGTAGATCATA-G--CAAACCTTATCTC
* * * *
33496069 TCTGAAGTTGCAGTGGAGCAGGTTGAAG
1 CCTAAAGTTGCAGTGGAACAGATTGAAG
33496097 ATACCAATCT
Statistics
Matches: 366, Mismatches: 79, Indels: 69
0.71 0.15 0.13
Matches are distributed among these distances:
84 2 0.01
85 49 0.13
86 2 0.01
87 34 0.09
88 6 0.02
89 74 0.20
90 41 0.11
91 28 0.08
92 72 0.20
93 5 0.01
94 3 0.01
95 2 0.01
96 47 0.13
97 1 0.00
ACGTcount: A:0.33, C:0.16, G:0.20, T:0.30
Consensus pattern (90 bp):
CCTAAAGTTGCAGTGGAACAGATTGAAGCTATAAATTCAATCTTATCTCTCTGAAGTTGTAGTAG
AGTAGATCATAGCAAACCTTATCTC
Found at i:33495840 original size:181 final size:181
Alignment explanation
Indices: 33495459--33495995 Score: 758
Period size: 181 Copynumber: 3.0 Consensus size: 181
33495449 CCTTATTTCT
* *
33495459 TTGAAGTTACTAGTCTTATCTCCCTAAAGTTGTAGTGGAGCAGACTGAAGATAGCGAATCTTATT
1 TTGAAGTTACTAGTCTTATCTCCCTGAAGTTGTAGTGAAGCAGACTGAAGATAGCGAATCTTATT
* * * * *
33495524 TTCCTAAAGTTACAGTGGAACTGATTAAAGCTATAAATTAG-G-ATCTTATCTCTCTGAAGTTAC
66 TCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATT-GCGAATCTTATCTCTCTGAAGTTGC
* * * * *
33495587 AGTAGAGCAAATCATAACAAACTTTATCTCCCTGAAGTTGCAGTGGAGCATG
130 AGTAGAGTAGATCATAACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGG
** *
33495639 TTGAAGTTACTAGTCTTATCTCATTGAAGTTGCAGTGAAGCAGACTGAAGATAGCGAATCTTATT
1 TTGAAGTTACTAGTCTTATCTCCCTGAAGTTGTAGTGAAGCAGACTGAAGATAGCGAATCTTATT
* * * *
33495704 TCCCTGAAGTTGTAGTGGAACAGATTGAAGCTATAAATTGCGAATCTTATCTATCTGAAGTTGTA
66 TCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTGCGAATCTTATCTCTCTGAAGTTGCA
* *
33495769 GTAGAGTAGATCATAGCAAACCTTATCTCCTTAAAGTTGCAGTGGAGCAGG
131 GTAGAGTAGATCATAACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGG
* *
33495820 TTGAAGTTACAAGTCTTATCTCCCTGAAGTTGTAGT-AGAGCAGACTGAAGATAGTGAATCTTAT
1 TTGAAGTTACTAGTCTTATCTCCCTGAAGTTGTAGTGA-AGCAGACTGAAGATAGCGAATCTTAT
* * * *
33495884 TTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTAC-AGATTTTATCTCTCTAAATTTG
65 TTCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTGCGA-ATCTTATCTCTCTGAAGTTG
* *
33495948 CAGTAGAGTAGATCATATCAAACCTTATCTCCCTAAAGTTACAGTGGA
129 CAGTAGAGTAGATCATAACAAACCTTATCTCCCTAAAGTTGCAGTGGA
33495996 ATAGGTTAAA
Statistics
Matches: 316, Mismatches: 37, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
179 1 0.00
180 96 0.30
181 219 0.69
ACGTcount: A:0.32, C:0.16, G:0.20, T:0.32
Consensus pattern (181 bp):
TTGAAGTTACTAGTCTTATCTCCCTGAAGTTGTAGTGAAGCAGACTGAAGATAGCGAATCTTATT
TCCCTGAAGTTGCAGTGGAACAGATTAAAGCTATAAATTGCGAATCTTATCTCTCTGAAGTTGCA
GTAGAGTAGATCATAACAAACCTTATCTCCCTAAAGTTGCAGTGGAGCAGG
Found at i:33496033 original size:46 final size:43
Alignment explanation
Indices: 33495971--33496184 Score: 187
Period size: 44 Copynumber: 4.8 Consensus size: 43
33495961 CATATCAAAC
* **
33495971 CTTATCTCCCTAAAGTTACAGTGGAATAGGTTAAAAATAAACCAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTT-AAAAT--ACCAAT
* ** * *
33496017 CTTATCTCCCTGAAGTTACAGTGGAGCAGATTAAAGGCACAAAC
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAA-ATACCAAT
* * *
33496061 CTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGATACCAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTT-AAAATACCAAT
* * * * *
33496105 CTTATCTCCCTGAATTTGCAGTGGAGCAGATTGAAACTACTAAT
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGGTT-AAAATACCAAT
* * *
33496149 CCTATCTCCTTGAAGTTGCAGTGGAGC-GGATTAAAA
1 CTTATCTCCCTGAAGTTACAGTGGAGCAGG-TTAAAA
33496185 CAATGAATCT
Statistics
Matches: 138, Mismatches: 27, Indels: 9
0.79 0.16 0.05
Matches are distributed among these distances:
43 4 0.03
44 101 0.73
45 5 0.04
46 28 0.20
ACGTcount: A:0.32, C:0.20, G:0.20, T:0.28
Consensus pattern (43 bp):
CTTATCTCCCTGAAGTTACAGTGGAGCAGGTTAAAATACCAAT
Found at i:33496132 original size:88 final size:88
Alignment explanation
Indices: 33495966--33496184 Score: 250
Period size: 88 Copynumber: 2.5 Consensus size: 88
33495956 TAGATCATAT
* * **
33495966 CAAACCTTATCTCCCTAAAGTTACAGTGGAATAGGTTAAAAATAAACCAATCTTATCTCCCTGAA
1 CAAACCTTATCT-CCTGAAGTTGCAGTGGAGCAGGTTAAAAAT-AACCAATCTTATCTCCCTGAA
33496031 GTTACAGTGGAGCAGATT-AAAGGC-A
64 GTTACAGTGGAGCAGATTGAAA--CTA
* * *
33496056 CAAACCTTATCTCTCTGAAGTTGCAGTGGAGCAGGTTGAAGAT-ACCAATCTTATCTCCCTGAAT
1 CAAACCTTATCTC-CTGAAGTTGCAGTGGAGCAGGTTAAAAATAACCAATCTTATCTCCCTGAAG
*
33496120 TTGCAGTGGAGCAGATTGAAACTA
65 TTACAGTGGAGCAGATTGAAACTA
*
33496144 CTAATCC-TATCTCCTTGAAGTTGCAGTGGAGC-GGATTAAAA
1 C-AAACCTTATCTCC-TGAAGTTGCAGTGGAGCAGG-TTAAAA
33496185 CAATGAATCT
Statistics
Matches: 112, Mismatches: 11, Indels: 14
0.82 0.08 0.10
Matches are distributed among these distances:
87 4 0.04
88 65 0.58
89 8 0.07
90 35 0.31
ACGTcount: A:0.33, C:0.20, G:0.20, T:0.27
Consensus pattern (88 bp):
CAAACCTTATCTCCTGAAGTTGCAGTGGAGCAGGTTAAAAATAACCAATCTTATCTCCCTGAAGT
TACAGTGGAGCAGATTGAAACTA
Found at i:33497830 original size:50 final size:52
Alignment explanation
Indices: 33497730--33497846 Score: 166
Period size: 52 Copynumber: 2.2 Consensus size: 52
33497720 AAAAAAAGCT
*
33497730 CATTTATCATTATTTATTTTAAGTTTTTTTTCATAGATTATTTATTTTAAAC
1 CATTTATTATTATTTATTTTAAGTTTTTTTTCATAGATTATTTATTTTAAAC
* * *
33497782 TATTTATTATTATTTATTTTATG-TTTTTTT-ATATATTATTTATTTTAAAC
1 CATTTATTATTATTTATTTTAAGTTTTTTTTCATAGATTATTTATTTTAAAC
33497832 CATTATATATATTAT
1 CATT-TAT-TATTAT
33497847 CTTTCAAATT
Statistics
Matches: 58, Mismatches: 5, Indels: 4
0.87 0.07 0.06
Matches are distributed among these distances:
50 22 0.38
51 10 0.17
52 26 0.45
ACGTcount: A:0.30, C:0.05, G:0.03, T:0.62
Consensus pattern (52 bp):
CATTTATTATTATTTATTTTAAGTTTTTTTTCATAGATTATTTATTTTAAAC
Found at i:33497840 original size:26 final size:25
Alignment explanation
Indices: 33497766--33497846 Score: 92
Period size: 26 Copynumber: 3.2 Consensus size: 25
33497756 TTTTTCATAG
33497766 ATTATTTATTTTAAACTATTTAT-T
1 ATTATTTATTTTAAACTATTTATAT
*** *
33497790 ATTATTTATTTTATGTTTTTTTATAT
1 ATTATTTATTTTA-AACTATTTATAT
*
33497816 ATTATTTATTTTAAACCATTATATAT
1 ATTATTTATTTTAAACTATT-TATAT
33497842 ATTAT
1 ATTAT
33497847 CTTTCAAATT
Statistics
Matches: 45, Mismatches: 9, Indels: 4
0.78 0.16 0.07
Matches are distributed among these distances:
24 13 0.29
25 8 0.18
26 24 0.53
ACGTcount: A:0.32, C:0.04, G:0.01, T:0.63
Consensus pattern (25 bp):
ATTATTTATTTTAAACTATTTATAT
Found at i:33497861 original size:24 final size:27
Alignment explanation
Indices: 33497834--33497890 Score: 66
Period size: 24 Copynumber: 2.2 Consensus size: 27
33497824 TTTTAAACCA
*
33497834 TTATATATAT-TATCTTTCAAA-T-TT
1 TTATATATATATATCTTTAAAACTGTT
* *
33497858 TTATTTATATATATTTTTAAAACTGTT
1 TTATATATATATATCTTTAAAACTGTT
33497885 TTATAT
1 TTATAT
33497891 GTTATTTTTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
24 9 0.35
25 9 0.35
26 1 0.04
27 7 0.27
ACGTcount: A:0.33, C:0.05, G:0.02, T:0.60
Consensus pattern (27 bp):
TTATATATATATATCTTTAAAACTGTT
Found at i:33497947 original size:12 final size:12
Alignment explanation
Indices: 33497905--33497930 Score: 52
Period size: 12 Copynumber: 2.2 Consensus size: 12
33497895 TTTTTTATAT
33497905 TATTACAACATA
1 TATTACAACATA
33497917 TATTACAACATA
1 TATTACAACATA
33497929 TA
1 TA
33497931 ATATATTACA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 14 1.00
ACGTcount: A:0.50, C:0.15, G:0.00, T:0.35
Consensus pattern (12 bp):
TATTACAACATA
Found at i:33497955 original size:17 final size:17
Alignment explanation
Indices: 33497914--33497947 Score: 68
Period size: 17 Copynumber: 2.0 Consensus size: 17
33497904 TTATTACAAC
33497914 ATATATTACAACATATA
1 ATATATTACAACATATA
33497931 ATATATTACAACATATA
1 ATATATTACAACATATA
33497948 CTTAATTATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.53, C:0.12, G:0.00, T:0.35
Consensus pattern (17 bp):
ATATATTACAACATATA
Found at i:33503776 original size:39 final size:37
Alignment explanation
Indices: 33503709--33503801 Score: 98
Period size: 39 Copynumber: 2.5 Consensus size: 37
33503699 ACCAGAATGG
* *
33503709 CACCCAGTGCCTCATCGGATAGTTCGAAGCAATAGTTGA
1 CACCCAGTGCCTCATCGGAAAGTCCGAAG-AA-AGTTGA
* *
33503748 CACCCAGTGTCTCATCGGCAAAG-CCGAAGAAAGTTGG
1 CACCCAGTGCCTCATCGG-AAAGTCCGAAGAAAGTTGA
* *
33503785 TACCCAGTACCTCATCG
1 CACCCAGTGCCTCATCG
33503802 AATCTATCCG
Statistics
Matches: 46, Mismatches: 7, Indels: 4
0.81 0.12 0.07
Matches are distributed among these distances:
37 19 0.41
38 2 0.04
39 22 0.48
40 3 0.07
ACGTcount: A:0.28, C:0.29, G:0.23, T:0.20
Consensus pattern (37 bp):
CACCCAGTGCCTCATCGGAAAGTCCGAAGAAAGTTGA
Done.