Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 105 of 313
Found at i:34680913 original size:30 final size:31
Alignment explanation
Indices: 34680847--34680916 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
34680837 CCACCCTTAA
* * *
34680847 AATATTTACACTATTAGTCCTTCAAAATTTT
1 AATATTTACACTATCAATCCCTCAAAATTTT
*
34680878 CATATTTACACT-TCAATCCCTC-AAATTTT
1 AATATTTACACTATCAATCCCTCAAAATTTT
34680907 GAATATTTAC
1 -AATATTTAC
34680917 TCTTGGGCCA
Statistics
Matches: 33, Mismatches: 5, Indels: 3
0.80 0.12 0.07
Matches are distributed among these distances:
29 7 0.21
30 15 0.45
31 11 0.33
ACGTcount: A:0.34, C:0.20, G:0.03, T:0.43
Consensus pattern (31 bp):
AATATTTACACTATCAATCCCTCAAAATTTT
Found at i:34681218 original size:21 final size:22
Alignment explanation
Indices: 34681159--34681219 Score: 63
Period size: 21 Copynumber: 2.8 Consensus size: 22
34681149 ATTATTACCT
*
34681159 TTAAATTAAATAATAATATTTTTA
1 TTAAATT-AAT-ATAATATTTATA
* *
34681183 TTATATTATTA-AATATTTATA
1 TTAAATTAATATAATATTTATA
34681204 -TAAATTAATATAATAT
1 TTAAATTAATATAATAT
34681220 AATTCATAAA
Statistics
Matches: 31, Mismatches: 5, Indels: 5
0.76 0.12 0.12
Matches are distributed among these distances:
20 8 0.26
21 14 0.45
22 1 0.03
23 2 0.06
24 6 0.19
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (22 bp):
TTAAATTAATATAATATTTATA
Found at i:34685734 original size:12 final size:12
Alignment explanation
Indices: 34685717--34685741 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
34685707 GGTGTTCATT
34685717 CGGTTAACCGAC
1 CGGTTAACCGAC
34685729 CGGTTAACCGAC
1 CGGTTAACCGAC
34685741 C
1 C
34685742 CGAAATTACT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.24, C:0.36, G:0.24, T:0.16
Consensus pattern (12 bp):
CGGTTAACCGAC
Found at i:34685916 original size:9 final size:9
Alignment explanation
Indices: 34685902--34685971 Score: 113
Period size: 9 Copynumber: 7.8 Consensus size: 9
34685892 TTTGGTTAAA
34685902 AATTACCCG
1 AATTACCCG
34685911 AATTACCCG
1 AATTACCCG
34685920 AATTACCCG
1 AATTACCCG
34685929 AATTACCCG
1 AATTACCCG
*
34685938 AATTAACCG
1 AATTACCCG
*
34685947 AATTAACCG
1 AATTACCCG
*
34685956 AATTAACCG
1 AATTACCCG
34685965 AATTACC
1 AATTACC
34685972 GAAAAATACC
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
9 59 1.00
ACGTcount: A:0.39, C:0.29, G:0.10, T:0.23
Consensus pattern (9 bp):
AATTACCCG
Found at i:34687432 original size:16 final size:15
Alignment explanation
Indices: 34687406--34687446 Score: 57
Period size: 16 Copynumber: 2.7 Consensus size: 15
34687396 ACTTAAAATG
34687406 TAAATTGAATTGAAT
1 TAAATTGAATTGAAT
*
34687421 TAAATATGAATTGTAT
1 TAAAT-TGAATTGAAT
34687437 TAAATT-AATT
1 TAAATTGAATT
34687447 TAAATTTACT
Statistics
Matches: 24, Mismatches: 1, Indels: 3
0.86 0.04 0.11
Matches are distributed among these distances:
14 4 0.17
15 6 0.25
16 14 0.58
ACGTcount: A:0.46, C:0.00, G:0.10, T:0.44
Consensus pattern (15 bp):
TAAATTGAATTGAAT
Found at i:34690965 original size:22 final size:22
Alignment explanation
Indices: 34690937--34690983 Score: 94
Period size: 22 Copynumber: 2.1 Consensus size: 22
34690927 ACTAGGGCCC
34690937 ATTTTTTAATACAAAGTCCTAG
1 ATTTTTTAATACAAAGTCCTAG
34690959 ATTTTTTAATACAAAGTCCTAG
1 ATTTTTTAATACAAAGTCCTAG
34690981 ATT
1 ATT
34690984 CTATTAAAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 25 1.00
ACGTcount: A:0.36, C:0.13, G:0.09, T:0.43
Consensus pattern (22 bp):
ATTTTTTAATACAAAGTCCTAG
Found at i:34702592 original size:10 final size:10
Alignment explanation
Indices: 34702560--34702593 Score: 59
Period size: 10 Copynumber: 3.4 Consensus size: 10
34702550 TGAATTTGGT
34702560 TATGTGCATA
1 TATGTGCATA
*
34702570 TACGTGCATA
1 TATGTGCATA
34702580 TATGTGCATA
1 TATGTGCATA
34702590 TATG
1 TATG
34702594 GTTGATATTT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
10 22 1.00
ACGTcount: A:0.29, C:0.12, G:0.21, T:0.38
Consensus pattern (10 bp):
TATGTGCATA
Found at i:34707333 original size:28 final size:28
Alignment explanation
Indices: 34707288--34707353 Score: 80
Period size: 28 Copynumber: 2.4 Consensus size: 28
34707278 TTATTCAGTA
* * *
34707288 ACAGT-ACAGTCTGAGCCTTAGCCCTAT
1 ACAGTAACAGTCTGAGCCTAAGCCCAAC
* *
34707315 ACAGTAACAGTGTGGGCCTAAGCCCAAC
1 ACAGTAACAGTCTGAGCCTAAGCCCAAC
34707343 ACAGTAACAGT
1 ACAGTAACAGT
34707354 ACAGTGTAAT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
27 5 0.15
28 28 0.85
ACGTcount: A:0.32, C:0.27, G:0.21, T:0.20
Consensus pattern (28 bp):
ACAGTAACAGTCTGAGCCTAAGCCCAAC
Found at i:34707541 original size:27 final size:27
Alignment explanation
Indices: 34707511--34707562 Score: 68
Period size: 27 Copynumber: 1.9 Consensus size: 27
34707501 TACCAGAAAC
* *
34707511 AGTAAATGTGGTAAAGCCCCCAGTATT
1 AGTAAATGTGGCAAAGCCACCAGTATT
* *
34707538 AGTAATTGTGGCACAGCCACCAGTA
1 AGTAAATGTGGCAAAGCCACCAGTA
34707563 ACAGTGAATA
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
27 21 1.00
ACGTcount: A:0.33, C:0.21, G:0.23, T:0.23
Consensus pattern (27 bp):
AGTAAATGTGGCAAAGCCACCAGTATT
Found at i:34707791 original size:27 final size:27
Alignment explanation
Indices: 34707732--34707822 Score: 101
Period size: 27 Copynumber: 3.4 Consensus size: 27
34707722 GGGCTACTCG
* * * * *
34707732 TCATTTTGCCATAAAGGGGCATCACAA
1 TCATTTTACCCTACAGGGGCATTACGA
* * *
34707759 TAATTTTACCCTATAGGGGCATTACGG
1 TCATTTTACCCTACAGGGGCATTACGA
*
34707786 TCATTTTACCCTACAGGGGTATTACGA
1 TCATTTTACCCTACAGGGGCATTACGA
34707813 TCATTTTACC
1 TCATTTTACC
34707823 TATTTTGGAT
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 53 1.00
ACGTcount: A:0.27, C:0.22, G:0.18, T:0.33
Consensus pattern (27 bp):
TCATTTTACCCTACAGGGGCATTACGA
Found at i:34711642 original size:66 final size:66
Alignment explanation
Indices: 34711522--34711655 Score: 162
Period size: 66 Copynumber: 2.0 Consensus size: 66
34711512 TTATTTGGAT
* * * *
34711522 GTAACATTAGTATTTTGTTTAGATGTGTGCATTTTCTATTCAATATTATTTTCATCTTGCTCTTG
1 GTAACATTAGTACTTTGTTTAGATGTGTACATTTTCTATTCAAGATTATCTTCATCTTGCTCTTG
34711587 A
66 A
* * * * * *
34711588 GTAACATTAGTGCTTTGTTTATATGTGTATATTTTCTATTTAGGATTCA-CTTCATCTTGTTCTT
1 GTAACATTAGTACTTTGTTTAGATGTGTACATTTTCTATTCAAGATT-ATCTTCATCTTGCTCTT
34711652 GA
65 GA
34711654 GT
1 GT
34711656 TGTTGTGGGT
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
66 56 0.98
67 1 0.02
ACGTcount: A:0.22, C:0.12, G:0.15, T:0.51
Consensus pattern (66 bp):
GTAACATTAGTACTTTGTTTAGATGTGTACATTTTCTATTCAAGATTATCTTCATCTTGCTCTTG
A
Found at i:34718816 original size:48 final size:50
Alignment explanation
Indices: 34718759--34718855 Score: 155
Period size: 51 Copynumber: 2.0 Consensus size: 50
34718749 GTTTTGTAAG
34718759 ATTGGTTTTGGGTACGGC-T-TT-TTCTTCTTCTTATTCTTTTCCCTGAA
1 ATTGGTTTTGGGTACGGCTTCTTCTTCTTCTTCTTATTCTTTTCCCTGAA
*
34718806 ATTGGTTTTTGGGTACGGCTTCTTCTTCTTCTTCTTCTTCTTTTCCCTGA
1 ATTGG-TTTTGGGTACGGCTTCTTCTTCTTCTTCTTATTCTTTTCCCTGA
34718856 CTGATCTGAA
Statistics
Matches: 45, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
47 5 0.11
48 13 0.29
49 1 0.02
50 2 0.04
51 24 0.53
ACGTcount: A:0.08, C:0.22, G:0.16, T:0.54
Consensus pattern (50 bp):
ATTGGTTTTGGGTACGGCTTCTTCTTCTTCTTCTTATTCTTTTCCCTGAA
Found at i:34719583 original size:18 final size:18
Alignment explanation
Indices: 34719538--34719601 Score: 78
Period size: 18 Copynumber: 3.6 Consensus size: 18
34719528 ATGAAATAAG
34719538 TTATATGTTGTTGTTC-T
1 TTATATGTTGTTGTTCAT
*
34719555 TTAGGGA-GTTGTTGTTCAT
1 TTA--TATGTTGTTGTTCAT
34719574 TTATATGTTGTTGTTCAT
1 TTATATGTTGTTGTTCAT
*
34719592 TTATAAGTTG
1 TTATATGTTG
34719602 AAGTTTCAAT
Statistics
Matches: 40, Mismatches: 3, Indels: 7
0.80 0.06 0.14
Matches are distributed among these distances:
17 4 0.10
18 31 0.77
19 5 0.12
ACGTcount: A:0.17, C:0.05, G:0.22, T:0.56
Consensus pattern (18 bp):
TTATATGTTGTTGTTCAT
Found at i:34721610 original size:14 final size:14
Alignment explanation
Indices: 34721591--34721646 Score: 76
Period size: 14 Copynumber: 4.0 Consensus size: 14
34721581 GAAAAGTAAG
*
34721591 TCATTTTTCAGAAA
1 TCATTTTCCAGAAA
34721605 TCATTTTCCAGAAA
1 TCATTTTCCAGAAA
*
34721619 TCATTTTCCAAAAA
1 TCATTTTCCAGAAA
* *
34721633 TTATTTTCCGGAAA
1 TCATTTTCCAGAAA
34721647 ATATTTTACT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 37 1.00
ACGTcount: A:0.36, C:0.18, G:0.07, T:0.39
Consensus pattern (14 bp):
TCATTTTCCAGAAA
Found at i:34721651 original size:14 final size:14
Alignment explanation
Indices: 34721602--34721653 Score: 54
Period size: 14 Copynumber: 3.7 Consensus size: 14
34721592 CATTTTTCAG
34721602 AAATCATTTTCC-A
1 AAATCATTTTCCGA
*
34721615 GAAATCATTTTCCAA
1 -AAATCATTTTCCGA
*
34721630 AAATTATTTTCCGGA
1 AAATCATTTTCC-GA
34721645 AAAT-ATTTT
1 AAATCATTTT
34721654 ACTTGCAAAC
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
14 28 0.82
15 6 0.18
ACGTcount: A:0.38, C:0.15, G:0.06, T:0.40
Consensus pattern (14 bp):
AAATCATTTTCCGA
Found at i:34725203 original size:25 final size:25
Alignment explanation
Indices: 34725169--34725218 Score: 100
Period size: 25 Copynumber: 2.0 Consensus size: 25
34725159 AGCAGACTGC
34725169 AACTCCCCATATTAGCTTTTTCATT
1 AACTCCCCATATTAGCTTTTTCATT
34725194 AACTCCCCATATTAGCTTTTTCATT
1 AACTCCCCATATTAGCTTTTTCATT
34725219 TTGGCAAATC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 25 1.00
ACGTcount: A:0.24, C:0.28, G:0.04, T:0.44
Consensus pattern (25 bp):
AACTCCCCATATTAGCTTTTTCATT
Found at i:34728666 original size:4 final size:4
Alignment explanation
Indices: 34728657--34728737 Score: 72
Period size: 4 Copynumber: 19.8 Consensus size: 4
34728647 AGTAAGTTAA
* *** * *
34728657 AAAG AAAG AAAG AAAG AAAG AAAG ATAG AAAG AGTT ACAG AGAG CAAACG
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAAG -AAA-G
**
34728707 TGAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
1 AAAG AAAG AAAG AAAG AAAG AAAG AAAG AAA
34728738 TAGAAAAGGG
Statistics
Matches: 61, Mismatches: 14, Indels: 4
0.77 0.18 0.05
Matches are distributed among these distances:
4 57 0.93
5 3 0.05
6 1 0.02
ACGTcount: A:0.65, C:0.04, G:0.26, T:0.05
Consensus pattern (4 bp):
AAAG
Found at i:34734528 original size:53 final size:54
Alignment explanation
Indices: 34734470--34734609 Score: 216
Period size: 53 Copynumber: 2.6 Consensus size: 54
34734460 GATTGAATAC
34734470 TAGTCCTTGCAGACTCATACATGGAATAGTCCTTGTGCAGACTCATACATGGAA
1 TAGTCCTTGCAGACTCATACATGGAATAGTCCTTGTGCAGACTCATACATGGAA
34734524 -AGTCCTTGCAGACTCATACATGGAATAGTCC-T-TGCAGACTCATACATGGAA
1 TAGTCCTTGCAGACTCATACATGGAATAGTCCTTGTGCAGACTCATACATGGAA
* * *
34734575 TAGTCCTTGC-GAACCCATACATGGATTAATCCTTG
1 TAGTCCTTGCAG-ACTCATACATGGAATAGTCCTTG
34734610 CGGACTATTA
Statistics
Matches: 79, Mismatches: 3, Indels: 8
0.88 0.03 0.09
Matches are distributed among these distances:
51 20 0.25
52 27 0.34
53 32 0.41
ACGTcount: A:0.29, C:0.24, G:0.19, T:0.28
Consensus pattern (54 bp):
TAGTCCTTGCAGACTCATACATGGAATAGTCCTTGTGCAGACTCATACATGGAA
Found at i:34734560 original size:26 final size:26
Alignment explanation
Indices: 34734470--34734615 Score: 215
Period size: 26 Copynumber: 5.6 Consensus size: 26
34734460 GATTGAATAC
34734470 TAGTCCTTGCAGACTCATACATGGAA
1 TAGTCCTTGCAGACTCATACATGGAA
34734496 TAGTCCTTGTGCAGACTCATACATGGAA
1 TAGTCC-T-TGCAGACTCATACATGGAA
34734524 -AGTCCTTGCAGACTCATACATGGAA
1 TAGTCCTTGCAGACTCATACATGGAA
34734549 TAGTCCTTGCAGACTCATACATGGAA
1 TAGTCCTTGCAGACTCATACATGGAA
* *
34734575 TAGTCCTTGC-GAACCCATACATGGAT
1 TAGTCCTTGCAG-ACTCATACATGGAA
* *
34734601 TAATCCTTGCGGACT
1 TAGTCCTTGCAGACT
34734616 ATTACTTAAA
Statistics
Matches: 111, Mismatches: 4, Indels: 10
0.89 0.03 0.08
Matches are distributed among these distances:
25 20 0.18
26 65 0.59
27 7 0.06
28 19 0.17
ACGTcount: A:0.29, C:0.24, G:0.20, T:0.27
Consensus pattern (26 bp):
TAGTCCTTGCAGACTCATACATGGAA
Found at i:34737980 original size:40 final size:40
Alignment explanation
Indices: 34737929--34738054 Score: 164
Period size: 41 Copynumber: 3.1 Consensus size: 40
34737919 AAAAATTATA
* * *
34737929 AAAAACTGAGCAATAGCGGCG-TTTTAGCAAAAACGCCGCT
1 AAAAACAGAGCATTAGCGGCGCTTTT-GGAAAAACGCCGCT
* *
34737969 AAAAACAGAGCATTAGCGGCGCTTTTGGTAAAATGCCGCT
1 AAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
* *
34738009 AAAGACTAGAGCATTAGCAGCGCTTTTGGAAAAACGCCGCT
1 AAAAAC-AGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
34738050 AAAAA
1 AAAAA
34738055 TCATATAACT
Statistics
Matches: 74, Mismatches: 10, Indels: 3
0.85 0.11 0.03
Matches are distributed among these distances:
40 35 0.47
41 39 0.53
ACGTcount: A:0.37, C:0.21, G:0.23, T:0.19
Consensus pattern (40 bp):
AAAAACAGAGCATTAGCGGCGCTTTTGGAAAAACGCCGCT
Found at i:34743725 original size:43 final size:43
Alignment explanation
Indices: 34743669--34743904 Score: 289
Period size: 43 Copynumber: 5.5 Consensus size: 43
34743659 TTTTTGAATT
* *
34743669 TCATGA-CTTTTAGCGGCGTTTTTGAAAAAAGCGCCGCTAAAGG
1 TCATGATC-TTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
* * * *
34743712 TCTTGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCACTAGAGG
1 TCATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
* * * *
34743755 TCATGAT-TGTTAGCGGCATTTGT-AAGAAAAGTGTCGCTAAAGG
1 TCATGATCT-TTAGCGGCGTTTGTGGA-AAAAGCGCCGCTAAAGG
*
34743798 TCATGATCTTTAGCGGCGTTTGTGGGAAAAGCGCCGCTAAAGG
1 TCATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
* * *
34743841 TTATGATCTTTAGCGGCATTTGTGGAAAAAGCGCCGCTAATGG
1 TCATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
*
34743884 TAATGATCTTTAGCGGCGTTT
1 TCATGATCTTTAGCGGCGTTT
34743905 TTTCAAATAA
Statistics
Matches: 163, Mismatches: 25, Indels: 10
0.82 0.13 0.05
Matches are distributed among these distances:
42 1 0.01
43 160 0.98
44 2 0.01
ACGTcount: A:0.25, C:0.17, G:0.29, T:0.30
Consensus pattern (43 bp):
TCATGATCTTTAGCGGCGTTTGTGGAAAAAGCGCCGCTAAAGG
Found at i:34746556 original size:11 final size:11
Alignment explanation
Indices: 34746540--34746570 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
34746530 AAGTATGGGT
34746540 AGGTATGGGAA
1 AGGTATGGGAA
*
34746551 AGGTATGGGCA
1 AGGTATGGGAA
34746562 AGGTATGGG
1 AGGTATGGG
34746571 GTATGGGTAT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:34750647 original size:18 final size:18
Alignment explanation
Indices: 34750624--34750716 Score: 159
Period size: 18 Copynumber: 5.2 Consensus size: 18
34750614 CCCAACTACT
*
34750624 GTATACGTGAACAGTACC
1 GTATACGTGAATAGTACC
*
34750642 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
34750660 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
*
34750678 GTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACC
34750696 GTATACGTGAATAGTACC
1 GTATACGTGAATAGTACC
34750714 GTA
1 GTA
34750717 AACGGTCGTA
Statistics
Matches: 70, Mismatches: 5, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
18 70 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (18 bp):
GTATACGTGAATAGTACC
Found at i:34750676 original size:36 final size:36
Alignment explanation
Indices: 34750624--34750716 Score: 177
Period size: 36 Copynumber: 2.6 Consensus size: 36
34750614 CCCAACTACT
*
34750624 GTATACGTGAACAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
34750660 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
1 GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
34750696 GTATACGTGAATAGTACCGTA
1 GTATACGTGAATAGTACCGTA
34750717 AACGGTCGTA
Statistics
Matches: 56, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 56 1.00
ACGTcount: A:0.31, C:0.17, G:0.25, T:0.27
Consensus pattern (36 bp):
GTATACGTGAATAGTACCGTATACGTGAATAGTGCC
Found at i:34751277 original size:11 final size:11
Alignment explanation
Indices: 34751261--34751291 Score: 53
Period size: 11 Copynumber: 2.8 Consensus size: 11
34751251 AAGTATGGGT
34751261 AGGTATGGGAA
1 AGGTATGGGAA
*
34751272 AGGTATGGGCA
1 AGGTATGGGAA
34751283 AGGTATGGG
1 AGGTATGGG
34751292 GTATATTCTA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
11 19 1.00
ACGTcount: A:0.29, C:0.03, G:0.48, T:0.19
Consensus pattern (11 bp):
AGGTATGGGAA
Found at i:34764177 original size:22 final size:22
Alignment explanation
Indices: 34764126--34764186 Score: 61
Period size: 22 Copynumber: 2.8 Consensus size: 22
34764116 ATAAGTAAAT
* *
34764126 ACAAAAATAA-AGGAAAATATA
1 ACAAAAATAATAGAAAAATACA
* *
34764147 ATAACAATAATAGAAAAATACA
1 ACAAAAATAATAGAAAAATACA
* *
34764169 ACAATAATAATAGTAAAA
1 ACAAAAATAATAGAAAAA
34764187 GATATAATAA
Statistics
Matches: 32, Mismatches: 7, Indels: 1
0.80 0.17 0.03
Matches are distributed among these distances:
21 8 0.25
22 24 0.75
ACGTcount: A:0.69, C:0.07, G:0.07, T:0.18
Consensus pattern (22 bp):
ACAAAAATAATAGAAAAATACA
Found at i:34764237 original size:3 final size:3
Alignment explanation
Indices: 34764229--34764264 Score: 63
Period size: 3 Copynumber: 12.0 Consensus size: 3
34764219 ACACTACCAT
*
34764229 ATA ATA ATA ATA ATA ATA ATA ATG ATA ATA ATA ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
34764265 TAGAAATACA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
3 31 1.00
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (3 bp):
ATA
Found at i:34764371 original size:3 final size:3
Alignment explanation
Indices: 34764357--34764398 Score: 75
Period size: 3 Copynumber: 13.7 Consensus size: 3
34764347 AAATATACAC
34764357 TAA TATA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TA-A TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA
34764399 TTAAAATGCA
Statistics
Matches: 38, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
3 35 0.92
4 3 0.08
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:34764896 original size:26 final size:26
Alignment explanation
Indices: 34764847--34764922 Score: 100
Period size: 26 Copynumber: 2.9 Consensus size: 26
34764837 GATTTTTTGT
34764847 TCTTGAATCTCAAAAAAAAAAAATCCCC
1 TCTTGAATCTC--AAAAAAAAAATCCCC
***
34764875 TCTTGAATCTCAAAAAAAAAATCTTT
1 TCTTGAATCTCAAAAAAAAAATCCCC
34764901 TCTTGAATCT-AAAAAAAAAATC
1 TCTTGAATCTCAAAAAAAAAATC
34764923 TCTTCTCTCC
Statistics
Matches: 45, Mismatches: 3, Indels: 3
0.88 0.06 0.06
Matches are distributed among these distances:
25 12 0.27
26 22 0.49
28 11 0.24
ACGTcount: A:0.50, C:0.18, G:0.04, T:0.28
Consensus pattern (26 bp):
TCTTGAATCTCAAAAAAAAAATCCCC
Found at i:34765444 original size:44 final size:44
Alignment explanation
Indices: 34765388--34765615 Score: 178
Period size: 44 Copynumber: 5.2 Consensus size: 44
34765378 TTCTTCGATC
* * *
34765388 TGTTCCCCATAAACACAGGGATGCCAAATTTGCTGTCTTCAACT
1 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
* *
34765432 TTTTCCTTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
1 TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
* * ** *
34765476 TGTTCCCTATAAGCACAGGGATTCC--ATGCTGAAATCTTCGA-T
1 TGTTCCCTATAAACACAGGGATGCCAAAT-CTGCTATCTTCAACT
* * * * * * ** *
34765518 CTGCTTCACC-GTGAGCATAGGAATGTCAGTTCTGCTATCTTCGA-T
1 -TG-TTC-CCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
* * *
34765563 CTGTTCCCTATAAGCACAGGGATGCCAAATCTGCTGTTTTCAACT
1 -TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
34765608 TGTTCCCT
1 TGTTCCCT
34765616 GACAATACGG
Statistics
Matches: 145, Mismatches: 31, Indels: 16
0.76 0.16 0.08
Matches are distributed among these distances:
42 3 0.02
43 14 0.10
44 109 0.75
45 18 0.12
46 1 0.01
ACGTcount: A:0.25, C:0.26, G:0.17, T:0.32
Consensus pattern (44 bp):
TGTTCCCTATAAACACAGGGATGCCAAATCTGCTATCTTCAACT
Found at i:34766122 original size:206 final size:206
Alignment explanation
Indices: 34765755--34766680 Score: 1359
Period size: 205 Copynumber: 4.5 Consensus size: 206
34765745 GGGAACATCC
* * * * *
34765755 GAAAGTCAAATCTGCTATGTCTTCGATTTGTTCCTTATAAGCACAAGGATGCCAAATCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* ** * * ** *
34765820 ATCTTGCTTCAGTATAAACATCTGAAGGTTAGATCAACTATGTATCTGTTGTCCATTGAAGTGGA
66 ATCTTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATCAAAGTGAA
* * *
34765885 GATACCAGAC-TCTGATTTGTTCTCTGACAATACAGAGACCACAAATCATCTTAGATTTGCTTCA
131 GATGCCAAACTTC-GATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCA
34765949 TCGTAATCACGT
195 TCGTAATCACGT
* * * *
34765961 GAAAGCCAAATCAGCTATGTCTTTGATTTGTTCCTTCTAAGCACAAGGATGCCAAATCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* ** *
34766026 ATCTTGCTTCAGTATAAACATCTGAAGGTCAGATTTGCTATGTATCTGCTCTCCATTGAAGTGGA
66 ATCTTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATCAAAGTGAA
* *
34766091 GATGCCAGACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTTAT
131 GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
34766156 CGTAA-CACGT
196 CGTAATCACGT
*
34766166 GAAAGCCAAATTAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
** * *
34766231 ATC-TGCTTCAGTGA-AATTATCTGAAGG-CGAGATCTGCTATGTGTCTGCTCTCTATCAAAGTG
66 ATCTTGCTTCAGT-ATAAACATCTGAAGGTC-AGATCTGCTATGTATCTGCTCTCCATCAAAGTG
* *
34766293 AAGATGCCAAACTTTGATTCGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
129 AAGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTC
34766358 ATCGTAATCACGT
194 ATCGTAATCACGT
* *
34766371 GAAAGCCAAATTAGCTATGTCTTCGATTTATTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* * *
34766436 ATC-TGCTTCAGTGA-AATCATCTGAAGGTGAGATCTGCTATGTGTCTGCTCTCCATCAAAGTGA
66 ATCTTGCTTCAGT-ATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATCAAAGTGA
34766499 AGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCA
130 AGATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCA
34766564 TCGTAATCACGT
195 TCGTAATCACGT
* *
34766576 GAAAGCCAAATCAGCTATGTCTTCGATTTGCTCCTTGTAAACACAACGATGCCAAACCATCTTGG
1 GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
* *
34766641 AT-TTGCTTCAGTAT-AACATCTGTAGG-CAAGATCTGTTATG
66 ATCTTGCTTCAGTATAAACATCTGAAGGTC-AGATCTGCTATG
34766681 CTGCGGCCTA
Statistics
Matches: 668, Mismatches: 44, Indels: 18
0.92 0.06 0.02
Matches are distributed among these distances:
203 1 0.00
204 137 0.21
205 344 0.51
206 184 0.28
207 2 0.00
ACGTcount: A:0.29, C:0.21, G:0.18, T:0.32
Consensus pattern (206 bp):
GAAAGCCAAATCAGCTATGTCTTCGATTTGTTCCTTGTAAACACAAGGATGCCAAACCATCTTGG
ATCTTGCTTCAGTATAAACATCTGAAGGTCAGATCTGCTATGTATCTGCTCTCCATCAAAGTGAA
GATGCCAAACTTCGATTTGTTCTCTGACAATACAGAGACGACAAATCATCTTAGATTTGCTTCAT
CGTAATCACGT
Found at i:34773387 original size:35 final size:35
Alignment explanation
Indices: 34773338--34773407 Score: 122
Period size: 35 Copynumber: 2.0 Consensus size: 35
34773328 AAGCTCACGA
* *
34773338 TACGTCATAGGGATAGGCGTAAATTGCATTCTTTC
1 TACGTCACAAGGATAGGCGTAAATTGCATTCTTTC
34773373 TACGTCACAAGGATAGGCGTAAATTGCATTCTTTC
1 TACGTCACAAGGATAGGCGTAAATTGCATTCTTTC
34773408 CAAATTCTGT
Statistics
Matches: 33, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
35 33 1.00
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33
Consensus pattern (35 bp):
TACGTCACAAGGATAGGCGTAAATTGCATTCTTTC
Found at i:34774743 original size:15 final size:14
Alignment explanation
Indices: 34774701--34774750 Score: 50
Period size: 15 Copynumber: 3.5 Consensus size: 14
34774691 ATAATTTTGA
*
34774701 ATGCAAATGATGTG
1 ATGCAAATGATGAG
34774715 ATG-AAATGTTATGAG
1 ATGCAAATG--ATGAG
34774730 ATGCAAATGCATGA-
1 ATGCAAATG-ATGAG
34774744 ATGCAAA
1 ATGCAAA
34774751 AAGAATATCG
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
13 5 0.16
14 10 0.32
15 11 0.35
16 5 0.16
ACGTcount: A:0.42, C:0.08, G:0.24, T:0.26
Consensus pattern (14 bp):
ATGCAAATGATGAG
Found at i:34778423 original size:16 final size:15
Alignment explanation
Indices: 34778394--34778436 Score: 59
Period size: 16 Copynumber: 2.8 Consensus size: 15
34778384 TATACGTATG
*
34778394 AAAAATAATGATAGT
1 AAAAATAATAATAGT
34778409 AAAATATAATAATAGT
1 AAAA-ATAATAATAGT
*
34778425 AATAATAATAAT
1 AAAAATAATAAT
34778437 GGAATGAAGG
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
15 12 0.48
16 13 0.52
ACGTcount: A:0.63, C:0.00, G:0.07, T:0.30
Consensus pattern (15 bp):
AAAAATAATAATAGT
Found at i:34780100 original size:40 final size:39
Alignment explanation
Indices: 34779989--34780143 Score: 247
Period size: 40 Copynumber: 3.9 Consensus size: 39
34779979 TTGATTCCAC
* * *
34779989 TCCCCCATGCTACTTTGTTTTATTATTAATTAAAACTAC
1 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
34780028 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
1 TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
* *
34780067 TCCCCCGTACTATTTTGTTTTTATTATTAATTAAAACCAT
1 TCCCCCATACTATTTTG-TTTTATTATTAATTAAAACTAT
34780107 TCCCCCATACTATTTTGTTTTTATTATTAATTAAAAC
1 TCCCCCATACTATTTTG-TTTTATTATTAATTAAAAC
34780144 CATACTTTAT
Statistics
Matches: 109, Mismatches: 6, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
39 52 0.48
40 57 0.52
ACGTcount: A:0.29, C:0.20, G:0.04, T:0.47
Consensus pattern (39 bp):
TCCCCCATACTATTTTGTTTTATTATTAATTAAAACTAT
Found at i:34786345 original size:32 final size:32
Alignment explanation
Indices: 34786309--34786372 Score: 119
Period size: 32 Copynumber: 2.0 Consensus size: 32
34786299 TTTTCAACTC
34786309 TTTCCCTTCCTCTAGGGCTATATTCTCTATTG
1 TTTCCCTTCCTCTAGGGCTATATTCTCTATTG
*
34786341 TTTCCCTTTCTCTAGGGCTATATTCTCTATTG
1 TTTCCCTTCCTCTAGGGCTATATTCTCTATTG
34786373 CCTCTTTCTC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
32 31 1.00
ACGTcount: A:0.12, C:0.27, G:0.12, T:0.48
Consensus pattern (32 bp):
TTTCCCTTCCTCTAGGGCTATATTCTCTATTG
Found at i:34786382 original size:30 final size:30
Alignment explanation
Indices: 34786311--34786382 Score: 101
Period size: 32 Copynumber: 2.3 Consensus size: 30
34786301 TTCAACTCTT
*
34786311 TCCCTTCCTCTAGGGCTATATTCTCTATTG
1 TCCCTTTCTCTAGGGCTATATTCTCTATTG
34786341 TTTCCCTTTCTCTAGGGCTATATTCTCTATTG
1 --TCCCTTTCTCTAGGGCTATATTCTCTATTG
34786373 -CCTCTTTCTC
1 TCC-CTTTCTC
34786383 ATGTTGCATG
Statistics
Matches: 38, Mismatches: 1, Indels: 4
0.88 0.02 0.09
Matches are distributed among these distances:
29 2 0.05
30 7 0.18
32 29 0.76
ACGTcount: A:0.11, C:0.31, G:0.11, T:0.47
Consensus pattern (30 bp):
TCCCTTTCTCTAGGGCTATATTCTCTATTG
Found at i:34789846 original size:9 final size:9
Alignment explanation
Indices: 34789832--34789871 Score: 55
Period size: 9 Copynumber: 4.4 Consensus size: 9
34789822 GACCTCTCCA
34789832 CTTTCTTTT
1 CTTTCTTTT
34789841 CTTTCTTTTT
1 CTTTC-TTTT
34789851 CTTTC-TTT
1 CTTTCTTTT
*
34789859 CTTTTTTTT
1 CTTTCTTTT
34789868 CTTT
1 CTTT
34789872 TGAATGAATG
Statistics
Matches: 28, Mismatches: 1, Indels: 4
0.85 0.03 0.12
Matches are distributed among these distances:
8 7 0.25
9 12 0.43
10 9 0.32
ACGTcount: A:0.00, C:0.20, G:0.00, T:0.80
Consensus pattern (9 bp):
CTTTCTTTT
Found at i:34789857 original size:14 final size:14
Alignment explanation
Indices: 34789833--34789871 Score: 62
Period size: 14 Copynumber: 2.8 Consensus size: 14
34789823 ACCTCTCCAC
34789833 TTTCTTTTCTTTCTT
1 TTTC-TTTCTTTCTT
34789848 TTTCTTTCTTTCTT
1 TTTCTTTCTTTCTT
34789862 TTT-TTTCTTT
1 TTTCTTTCTTT
34789872 TGAATGAATG
Statistics
Matches: 24, Mismatches: 0, Indels: 2
0.92 0.00 0.08
Matches are distributed among these distances:
13 7 0.29
14 13 0.54
15 4 0.17
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (14 bp):
TTTCTTTCTTTCTT
Found at i:34805784 original size:77 final size:76
Alignment explanation
Indices: 34805599--34806061 Score: 639
Period size: 77 Copynumber: 6.1 Consensus size: 76
34805589 AAAACATTAA
* * * ** * *
34805599 TTGAAAATACCTCAGCGTG-CCCCGAGGCTCAACTCATTTCTCACAATATGAGTTGA-TTTTTTG
1 TTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTG
** * *
34805662 ATGAACAGAAA
66 AAAAATAGAAG
* *
34805673 TT-AAAACTACCTTAACGTGT-CCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
1 TTGAAAAC-ACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
34805736 GAAAAATAGAAG
65 GAAAAATAGAAG
34805748 TTGAAAACACCTCAGCGTGTAACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
1 TTGAAAACACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
34805813 GAAAAATAGAAG
65 GAAAAATAGAAG
34805825 TTGAAAACACCTCAGCGTGTAACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
1 TTGAAAACACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
34805890 GAAAAATAGAAG
65 GAAAAATAGAAG
*
34805902 TTGAAAACACCTCAGCGTGTAACCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTT
1 TTGAAAACACCTCAGCGTGT-ACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
** *
34805967 GAAAAGCAGAAC
65 GAAAAATAGAAG
* ** *
34805979 TTGAAAAGCACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCATAATATGAGTTGATTTTTTT
1 TTGAAAA-CACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTT
* *
34806043 GAAAAATATAAA
65 GAAAAATAGAAG
34806055 TTGAAAA
1 TTGAAAA
34806062 GCAGAAATCG
Statistics
Matches: 357, Mismatches: 25, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
73 4 0.01
74 42 0.12
75 26 0.07
76 61 0.17
77 212 0.59
78 12 0.03
ACGTcount: A:0.32, C:0.22, G:0.17, T:0.29
Consensus pattern (76 bp):
TTGAAAACACCTCAGCGTGTACCTGAGGCTCAACTCACCTCTCGCAACATGAGTTGATTTTTTTG
AAAAATAGAAG
Found at i:34806069 original size:14 final size:14
Alignment explanation
Indices: 34806052--34806089 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
34806042 TGAAAAATAT
34806052 AAATTGAAAAGCAG
1 AAATTGAAAAGCAG
*
34806066 AAATCGAAAAGCAG
1 AAATTGAAAAGCAG
34806080 AAATTGAAAA
1 AAATTGAAAA
34806090 TAGCTCAGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.61, C:0.08, G:0.18, T:0.13
Consensus pattern (14 bp):
AAATTGAAAAGCAG
Found at i:34806111 original size:103 final size:103
Alignment explanation
Indices: 34805967--34806177 Score: 300
Period size: 103 Copynumber: 2.0 Consensus size: 103
34805957 TGATTTTTTT
* * *
34805967 GAAAAGCAGAACTTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCATAATATGAG
1 GAAAAGCAGAAATTGAAAAGCACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAG
* *
34806032 TTGATTTTTTTGAAAAATATAAATTG-AAAAGCAGAAATC
66 TTGA--TTTTTGAAAAACATAAATTGAAAAAACAGAAATC
* * *
34806071 GAAAAGCAGAAATTGAAAA-TAGCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAG
1 GAAAAGCAGAAATTGAAAAGCACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAG
* *
34806135 TTGATTTTTGAAAAGCATAAATTGAAAAAACAGAAATT
66 TTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATC
34806173 GAAAA
1 GAAAA
34806178 TACCTCGACA
Statistics
Matches: 96, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
101 18 0.19
102 16 0.17
103 44 0.46
104 18 0.19
ACGTcount: A:0.40, C:0.18, G:0.18, T:0.23
Consensus pattern (103 bp):
GAAAAGCAGAAATTGAAAAGCACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTCACAATATGAG
TTGATTTTTGAAAAACATAAATTGAAAAAACAGAAATC
Found at i:34806209 original size:90 final size:88
Alignment explanation
Indices: 34806055--34806329 Score: 315
Period size: 92 Copynumber: 3.1 Consensus size: 88
34806045 AAAATATAAA
* * * * * * *
34806055 TTGAAAAGCAGAAATCG-AAAAGCAGAAATTGAAAATAGCTC-AGCGTGCCCCGAGGCTCAACTC
1 TTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAATACCTCGA-CATGTCCCGAGGCTCAGCTC
34806118 ACCTCTCGCAATATGAGTTGATTT
65 ACCTCTCGCAATATGAGTTGATTT
34806142 TTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAGCT
1 TTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAATACCTCGACATGT--CCCGAGGCTCAGCT
34806207 CACCTCTCGCAATATGAGTTGATTTTT
64 CACCTCTCGCAATATGAGTTGA--TTT
** **
34806234 TTGAAAAATATAAATTGAAAAAAAACAGAAATTGAAAATACCTCAGA-ATGTCCTAAGGCTC-GA
1 TTGAAAAGCATAAATTG--AAAAAACAGAAATTGAAAATACCTC-GACATGTCCCGAGGCTCAG-
** *
34806297 CTCATTTCTCGCAATATGAGTTGAGTT
62 CTCACCTCTCGCAATATGAGTTGATTT
34806324 TTGAAA
1 TTGAAA
34806330 CAAAAATTAA
Statistics
Matches: 164, Mismatches: 14, Indels: 17
0.84 0.07 0.09
Matches are distributed among these distances:
87 15 0.09
88 25 0.15
89 1 0.01
90 43 0.26
91 1 0.01
92 48 0.29
94 29 0.18
95 2 0.01
ACGTcount: A:0.39, C:0.18, G:0.17, T:0.25
Consensus pattern (88 bp):
TTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAATACCTCGACATGTCCCGAGGCTCAGCTCA
CCTCTCGCAATATGAGTTGATTT
Found at i:34806337 original size:71 final size:71
Alignment explanation
Indices: 34806256--34806415 Score: 196
Period size: 71 Copynumber: 2.2 Consensus size: 71
34806246 AATTGAAAAA
* * * **
34806256 AAACAGAAATTGAAAATACCTCAGAATGTCCTAAGGCTCGACTCATTTCTCGCAATATGAGTTGA
1 AAACAAAAATTGAAAATACCTCAGAATGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
34806321 GTTTTG
66 GTTTTG
* * *
34806327 AAACAAAAATT-AACAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAACAAAAATTGAA-AATACCTCAGAATGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTG
*
34806391 ATTTTTG
65 AGTTTTG
*
34806398 AAAAATATAAATTGAAAA
1 AAACA-A-AAATTGAAAA
34806416 AAAAACAGAA
Statistics
Matches: 75, Mismatches: 10, Indels: 6
0.82 0.11 0.07
Matches are distributed among these distances:
70 2 0.03
71 63 0.84
72 1 0.01
73 7 0.09
74 2 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.28
Consensus pattern (71 bp):
AAACAAAAATTGAAAATACCTCAGAATGTCCCAAGGCTCAACTCACCTCTCGCAATATGAGTTGA
GTTTTG
Found at i:34806478 original size:162 final size:163
Alignment explanation
Indices: 34806162--34806685 Score: 608
Period size: 162 Copynumber: 3.1 Consensus size: 163
34806152 TAAATTGAAA
*
34806162 AAACAGAAATTGAAAATACCTC-GACATGTAACCCGAGGCTCAGCTCACCTCTCGCAATATGAGT
1 AAACAGAAATTGAAAATACCTCAG-CATGT--CCCGAGGCTCAACTCACCTCTCGCAATATGAGT
* *
34806226 TGATTTTTTTGAAAAATATAAATTG-AAAAAAAACAGAAATTGAAAATACCTCAGAATGTCCTAA
63 TGA-TTTTTTGAAAAATATAAATTGAAAAAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGA
* ** *
34806290 GGCTCGACTCATTTCTCGCAATATGAGTTGAGTTTTG
127 GGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
* *
34806327 AAACAAAAATT-AACAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAGTATGAGTTG
1 AAACAGAAATTGAA-AATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
* *
34806391 A-TTTTTGAAAAATATAAATTGAAAAAAAAACAGAAACTGAAAATACCTTAGCATGTCCTGAGGC
65 ATTTTTTGAAAAATATAAATTGAAAAAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGC
34806455 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
130 TCAACTCACCTCTCGCAATATGAGTTGA--TTTTTG
* * * **
34806491 AAAAGCAGAACTTGAAAAGCACCTCAGCGTG-CCCTGAGGCTCAACTCACCTCTCATAATATGAG
1 -AAA-CAGAAATTGAAAA-TACCTCAGCATGTCCC-GAGGCTCAACTCACCTCTCGCAATATGAG
*
34806555 TTGATTTTTTTGAAAAATATAAATTGAAAAGCAGAAATCGAAAAGCAGAAATTGAAAATAGCTCA
62 TTGA-TTTTTTGAAAAATATAAATTG---A--A-AAA---AAAA-CAGAAATTGAAAATACCTCA
* * *
34806620 GCGTGCCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
116 GCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG
*
34806668 AAAAGCATAAATTGAAAA
1 -AAA-CAGAAATTGAAAA
34806686 AACAGAAATT
Statistics
Matches: 311, Mismatches: 26, Indels: 32
0.84 0.07 0.09
Matches are distributed among these distances:
161 20 0.06
162 63 0.20
163 34 0.11
164 7 0.02
165 26 0.08
166 12 0.04
167 42 0.14
169 20 0.06
172 1 0.00
174 1 0.00
175 3 0.01
177 22 0.07
178 4 0.01
179 56 0.18
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.26
Consensus pattern (163 bp):
AAACAGAAATTGAAAATACCTCAGCATGTCCCGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
TTTTTTGAAAAATATAAATTGAAAAAAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCT
CAACTCACCTCTCGCAATATGAGTTGATTTTTG
Found at i:34806582 original size:76 final size:76
Alignment explanation
Indices: 34806416--34806587 Score: 238
Period size: 76 Copynumber: 2.3 Consensus size: 76
34806406 AAATTGAAAA
* * * * * *
34806416 AAAAACAGAAACTGAAAA-TACCTTAGCATGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGT
1 AAAAACAGAAATTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGT
34806480 TGATTTTTTTG
66 TGATTTTTTTG
* * *
34806491 AAAAGCAGAACTTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCATAATATGAGT
1 AAAAACAGAAATTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGT
34806556 TGATTTTTTTG
66 TGATTTTTTTG
* *
34806567 AAAAATATAAATTGAAAAGCA
1 AAAAACAGAAATTGAAAAGCA
34806588 GAAATCGAAA
Statistics
Matches: 83, Mismatches: 13, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
75 15 0.18
76 68 0.82
ACGTcount: A:0.36, C:0.20, G:0.16, T:0.27
Consensus pattern (76 bp):
AAAAACAGAAATTGAAAAGCACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTCACAATATGAGT
TGATTTTTTTG
Found at i:34806592 original size:14 final size:14
Alignment explanation
Indices: 34806575--34806612 Score: 67
Period size: 14 Copynumber: 2.7 Consensus size: 14
34806565 TGAAAAATAT
34806575 AAATTGAAAAGCAG
1 AAATTGAAAAGCAG
*
34806589 AAATCGAAAAGCAG
1 AAATTGAAAAGCAG
34806603 AAATTGAAAA
1 AAATTGAAAA
34806613 TAGCTCAGCG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.61, C:0.08, G:0.18, T:0.13
Consensus pattern (14 bp):
AAATTGAAAAGCAG
Found at i:34806702 original size:88 final size:88
Alignment explanation
Indices: 34806578--34806773 Score: 265
Period size: 90 Copynumber: 2.2 Consensus size: 88
34806568 AAAATATAAA
* * * **
34806578 TTGAAAAGCAGAAATCG-AAAAGCAGAAATTGAAAATAGCTC-AGC-GTGCCCCGAGGCTCAACT
1 TTGAAAAGCAGAAATTGAAAAAACAGAAATTGAAAATACCTCGA-CAGTAACCCGAGGCTCAACT
34806640 CACCTCTCGCAATATGAGTTGATTT
65 CACCTCTCGCAATATGAGTTGA-TT
* *
34806665 TTGAAAAGCATAAATTGAAAAAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAGCT
1 TTGAAAAGCAGAAATTGAAAAAACAGAAATTGAAAATACCTCGACA-GTAACCCGAGGCTCAACT
34806730 CACCTCTCGCAATATGAGTTGATT
65 CACCTCTCGCAATATGAGTTGATT
34806754 TTGACAAA-CAGAAATTGAAA
1 TTGA-AAAGCAGAAATTGAAA
34806774 TTACCTCAGC
Statistics
Matches: 96, Mismatches: 8, Indels: 8
0.86 0.07 0.07
Matches are distributed among these distances:
87 15 0.16
88 23 0.24
89 18 0.19
90 40 0.42
ACGTcount: A:0.39, C:0.20, G:0.18, T:0.22
Consensus pattern (88 bp):
TTGAAAAGCAGAAATTGAAAAAACAGAAATTGAAAATACCTCGACAGTAACCCGAGGCTCAACTC
ACCTCTCGCAATATGAGTTGATT
Found at i:34806820 original size:72 final size:74
Alignment explanation
Indices: 34806685--34806830 Score: 199
Period size: 72 Copynumber: 2.0 Consensus size: 74
34806675 TAAATTGAAA
*
34806685 AAACAGAAATTGAAAATACCTCGACATGTAACCCGAGGCTCAGCTCACCTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCGACATGT-ACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
34806750 G-ATTTTGAC
65 GAATTTTGAC
* * * **
34806759 AAACAGAAATTGAAATTACCTC-AGCGTGT-CCCGTGGCTCAACTCATTTCTCGCAATATGAGTT
1 AAACAGAAATTGAAAATACCTCGA-CATGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTT
34806822 GAATTTTGA
65 GAATTTTGA
34806831 AACATAAATT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
72 31 0.48
73 8 0.12
74 25 0.39
ACGTcount: A:0.32, C:0.23, G:0.18, T:0.27
Consensus pattern (74 bp):
AAACAGAAATTGAAAATACCTCGACATGTACCCGAGGCTCAACTCACCTCTCGCAATATGAGTTG
AATTTTGAC
Found at i:34842534 original size:19 final size:18
Alignment explanation
Indices: 34842499--34842534 Score: 54
Period size: 18 Copynumber: 1.9 Consensus size: 18
34842489 GAAGCAAGCA
*
34842499 ATGATTGAAGAAATCAGG
1 ATGATTGAAAAAATCAGG
34842517 ATGATTGAAAAGAATCAG
1 ATGATTGAAAA-AATCAG
34842535 ACCTGGAGTC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
18 10 0.62
19 6 0.38
ACGTcount: A:0.47, C:0.06, G:0.25, T:0.22
Consensus pattern (18 bp):
ATGATTGAAAAAATCAGG
Found at i:34845529 original size:15 final size:15
Alignment explanation
Indices: 34845509--34845538 Score: 60
Period size: 15 Copynumber: 2.0 Consensus size: 15
34845499 AGTAAACACT
34845509 TCAAATTCTAATACA
1 TCAAATTCTAATACA
34845524 TCAAATTCTAATACA
1 TCAAATTCTAATACA
34845539 GTAAACACTT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 15 1.00
ACGTcount: A:0.47, C:0.20, G:0.00, T:0.33
Consensus pattern (15 bp):
TCAAATTCTAATACA
Found at i:34859198 original size:18 final size:18
Alignment explanation
Indices: 34859175--34859213 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
34859165 TTACCAATCT
* *
34859175 ATTATTTAAGTTATTCGA
1 ATTATTTAAATTATTCAA
34859193 ATTATTTAAATTATTCAA
1 ATTATTTAAATTATTCAA
34859211 ATT
1 ATT
34859214 CAACTTGACC
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.38, C:0.05, G:0.05, T:0.51
Consensus pattern (18 bp):
ATTATTTAAATTATTCAA
Found at i:34860032 original size:18 final size:21
Alignment explanation
Indices: 34860006--34860052 Score: 64
Period size: 18 Copynumber: 2.4 Consensus size: 21
34859996 TCATTGCTAC
*
34860006 TATTGTTCAATTTT-AT-T-T
1 TATTTTTCAATTTTAATATAT
34860024 TATTTTTCAATTTTAATATAT
1 TATTTTTCAATTTTAATATAT
34860045 TATTTTTC
1 TATTTTTC
34860053 TTTTTTTTTC
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
18 13 0.52
19 2 0.08
20 1 0.04
21 9 0.36
ACGTcount: A:0.26, C:0.06, G:0.02, T:0.66
Consensus pattern (21 bp):
TATTTTTCAATTTTAATATAT
Found at i:34860169 original size:7 final size:7
Alignment explanation
Indices: 34860159--34860210 Score: 88
Period size: 7 Copynumber: 7.4 Consensus size: 7
34860149 AAATATTAAA
34860159 TTTTTAT
1 TTTTTAT
34860166 TTTTT-T
1 TTTTTAT
34860172 ATTTTTAT
1 -TTTTTAT
34860180 TTTTTAT
1 TTTTTAT
34860187 TTTTTAT
1 TTTTTAT
34860194 TTTTTAT
1 TTTTTAT
34860201 TTTTTAT
1 TTTTTAT
34860208 TTT
1 TTT
34860211 AAAATTTTAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
6 1 0.02
7 41 0.95
8 1 0.02
ACGTcount: A:0.13, C:0.00, G:0.00, T:0.87
Consensus pattern (7 bp):
TTTTTAT
Found at i:34860218 original size:14 final size:14
Alignment explanation
Indices: 34860154--34860234 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
34860144 ATATTAAATA
34860154 TTAAATTTTTATTT
1 TTAAATTTTTATTT
**
34860168 TTTTATTTTTATTT
1 TTAAATTTTTATTT
* *
34860182 TTTATTTTTTATTT
1 TTAAATTTTTATTT
* *
34860196 TTTATTTTTTATTT
1 TTAAATTTTTATTT
* *
34860210 TAAAATTTTAAATTT
1 TTAAATTTT-TATTT
34860225 TTAAATTTTT
1 TTAAATTTTT
34860235 TTTGAAGATT
Statistics
Matches: 56, Mismatches: 10, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
14 44 0.79
15 12 0.21
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (14 bp):
TTAAATTTTTATTT
Found at i:34860218 original size:21 final size:21
Alignment explanation
Indices: 34860172--34860227 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
34860162 TTATTTTTTT
**
34860172 ATTTTTATTTTTTATTTTTTA
1 ATTTTTATTTTTTATTTTAAA
*
34860193 TTTTTTATTTTTTATTTTAAA
1 ATTTTTATTTTTTATTTTAAA
* *
34860214 ATTTTAAATTTTTA
1 ATTTTTATTTTTTA
34860228 AATTTTTTTT
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.25, C:0.00, G:0.00, T:0.75
Consensus pattern (21 bp):
ATTTTTATTTTTTATTTTAAA
Found at i:34860915 original size:21 final size:20
Alignment explanation
Indices: 34860891--34860948 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
34860881 CCAAACTCTG
34860891 AATCCTAAACCATAAATCTTA
1 AATCCTAAACCATAAAT-TTA
* *
34860912 AATCTTAGACCATAAATTTA
1 AATCCTAAACCATAAATTTA
* * *
34860932 CACCCTAAACCCTAAAT
1 AATCCTAAACCATAAAT
34860949 ATATATATTA
Statistics
Matches: 30, Mismatches: 7, Indels: 1
0.79 0.18 0.03
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.45, C:0.26, G:0.02, T:0.28
Consensus pattern (20 bp):
AATCCTAAACCATAAATTTA
Found at i:34861133 original size:20 final size:19
Alignment explanation
Indices: 34861108--34861164 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 19
34861098 GACCCTAACT
34861108 ATAAATAAACTAGTTAAATA
1 ATAAATAAAC-AGTTAAATA
34861128 ATAAATAAAACAGTTAAATA
1 ATAAAT-AAACAGTTAAATA
* *
34861148 ATAAATAGACAGATAAA
1 ATAAATAAACAGTTAAA
34861165 ATGTTTTTTG
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
19 9 0.26
20 21 0.62
21 4 0.12
ACGTcount: A:0.63, C:0.05, G:0.07, T:0.25
Consensus pattern (19 bp):
ATAAATAAACAGTTAAATA
Found at i:34861408 original size:41 final size:40
Alignment explanation
Indices: 34861349--34861461 Score: 140
Period size: 40 Copynumber: 2.8 Consensus size: 40
34861339 GGTCGACCAT
* *
34861349 TAGCGGCGCTTTTT-AAAAAGGCGACGCTAATGCTCT-ACCTA
1 TAGCAGCG-TTTTTCAAAAA-GCGCCGCTAATGCT-TGACCTA
* *
34861390 TAGCAGCGTTTTTCAAAAAGCGCCGCTAGTGCTTGATCTA
1 TAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCTTGACCTA
*
34861430 TAGCAGCGTCTTTCAAAAAGCGCCGCTAATGC
1 TAGCAGCGTTTTTCAAAAAGCGCCGCTAATGC
34861462 CACTAAAGCT
Statistics
Matches: 64, Mismatches: 6, Indels: 5
0.85 0.08 0.07
Matches are distributed among these distances:
39 1 0.02
40 51 0.80
41 12 0.19
ACGTcount: A:0.27, C:0.25, G:0.22, T:0.27
Consensus pattern (40 bp):
TAGCAGCGTTTTTCAAAAAGCGCCGCTAATGCTTGACCTA
Found at i:34861595 original size:40 final size:40
Alignment explanation
Indices: 34861512--34861629 Score: 121
Period size: 40 Copynumber: 3.0 Consensus size: 40
34861502 TTTTACGGCG
* * * **
34861512 TTTTTCAGAAAGCGCCGCTAATGGTTGACCTATAGC-GTG
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCA
*** *
34861551 TTTTTTTTAAAGCGCCGCTGATGCTCGACCTATAGCAGCA
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCA
* * *
34861591 TTTTTCAAAAAGCGCCTCTAATGCTCTATCTATAGCAGC
1 TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGC
34861630 GTTTGGATAA
Statistics
Matches: 63, Mismatches: 15, Indels: 1
0.80 0.19 0.01
Matches are distributed among these distances:
39 30 0.48
40 33 0.52
ACGTcount: A:0.25, C:0.24, G:0.19, T:0.32
Consensus pattern (40 bp):
TTTTTCAAAAAGCGCCGCTAATGCTCGACCTATAGCAGCA
Found at i:34862576 original size:105 final size:105
Alignment explanation
Indices: 34862394--34862599 Score: 349
Period size: 105 Copynumber: 2.0 Consensus size: 105
34862384 ACTTTGAAGC
* * * *
34862394 TTTAAGAGGATATTTGGCTGTTTAGTCGAACGAGAAATCGAAACCCAGCACGTTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTAGTCGAACAAGAAACCGAAACCCAGCACGTTAGGGCACGTTT
*
34862459 CCTCGATTTTCCAAACGCGAAATATTGCTTTATTTAAAAG
66 CCTCGATTTTCCAAACGCGAAATATTGCCTTATTTAAAAG
*
34862499 TTTAAAAGGATATTTGGCTATTTGGTCGAACAAGAAACCGAAACCCAGCACGTTAGGGCACGTTT
1 TTTAAAAGGATATTTGGCTATTTAGTCGAACAAGAAACCGAAACCCAGCACGTTAGGGCACGTTT
*
34862564 TCTCGATTTTCCAAACGCGAAATATTGCCTTATTTA
66 CCTCGATTTTCCAAACGCGAAATATTGCCTTATTTA
34862600 GAAAAATTTT
Statistics
Matches: 94, Mismatches: 7, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
105 94 1.00
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.31
Consensus pattern (105 bp):
TTTAAAAGGATATTTGGCTATTTAGTCGAACAAGAAACCGAAACCCAGCACGTTAGGGCACGTTT
CCTCGATTTTCCAAACGCGAAATATTGCCTTATTTAAAAG
Found at i:34864227 original size:168 final size:171
Alignment explanation
Indices: 34863898--34864228 Score: 429
Period size: 168 Copynumber: 1.9 Consensus size: 171
34863888 GATATTTATA
* * * *
34863898 TTTTTTTTTGGTGAAAATGTTTATACCTTTTTTTAGGAGAACTTATTTATATGATGAACATAAAA
1 TTTTTTTTT-GTGAAAAAGTTTATACCCTATTTTAGGAGAACTTATTGATATGATGAACATAAAA
* * * **
34863963 TCAAATTGTTCTGTAAAGTTCGAAGTAAATGACAAAAAAAGGAAAGGGAAATAATTTCTTTGGTA
65 TCAAATTGTTCTATAAAATTAGAAGTAAATGACAAAAAAAGGAAAGCAAAATAATTTCTTTGGTA
*
34864028 TTTTTCTTCAGAAAATTCTTGATTGATGTTTATGTCTTCTTC
130 TTTTTCTTCAGAAAATCCTTGATTGATGTTTATGTCTTCTTC
* *
34864070 TTTTTTTTT-TGAAAAAGTTTATACCCTATTTTAGGTGAATCTT-TTGATATGATGAATATAAAA
1 TTTTTTTTTGTGAAAAAGTTTATACCCTATTTTAGGAGAA-CTTATTGATATGATGAACATAAAA
* * * ** *
34864133 TCAGATT-TTTTATAAAATTATACTTAAATGAC-AAAAAATGAAAGCAAAATAATTTCTTTTGGT
65 TCAAATTGTTCTATAAAATTAGAAGTAAATGACAAAAAAAGGAAAGCAAAATAATTTC-TTTGGT
*
34864196 A-TTTTCTTTAGAAAATCCTTGATTGATGTTTAT
129 ATTTTTCTTCAGAAAATCCTTGATTGATGTTTAT
34864229 ACATTTTATA
Statistics
Matches: 138, Mismatches: 19, Indels: 8
0.84 0.12 0.05
Matches are distributed among these distances:
168 51 0.37
169 25 0.18
170 50 0.36
171 3 0.02
172 9 0.07
ACGTcount: A:0.35, C:0.08, G:0.14, T:0.44
Consensus pattern (171 bp):
TTTTTTTTTGTGAAAAAGTTTATACCCTATTTTAGGAGAACTTATTGATATGATGAACATAAAAT
CAAATTGTTCTATAAAATTAGAAGTAAATGACAAAAAAAGGAAAGCAAAATAATTTCTTTGGTAT
TTTTCTTCAGAAAATCCTTGATTGATGTTTATGTCTTCTTC
Found at i:34864788 original size:13 final size:13
Alignment explanation
Indices: 34864770--34864794 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
34864760 TCTTTTAAAA
34864770 AATTACTTTCAAT
1 AATTACTTTCAAT
34864783 AATTACTTTCAA
1 AATTACTTTCAA
34864795 CATTGTGGCC
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.16, G:0.00, T:0.44
Consensus pattern (13 bp):
AATTACTTTCAAT
Found at i:34865695 original size:299 final size:292
Alignment explanation
Indices: 34865166--34865892 Score: 796
Period size: 289 Copynumber: 2.4 Consensus size: 292
34865156 CCTTTTAAGT
* * * * * * *
34865166 TGAATTTTTTGATACGATGAATGCAAAATTAGATAGTTGTATAAAATTTAAAGTAAATGAC--AA
1 TGAATTTTTTGATATGATGAACGTAAAATCAGATA-TTTTATAAAATTTTAATTAAATGACAAAA
*
34865229 AAGGAAAACAAAATAATTTCTTTTGGTATTTTTGTTTAGAAAATCCTTGATTGATGTTTATACCT
65 AAGG-AAACAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCCTTGATTGATGTTTATACCT
*
34865294 TTTTTTGTGTGTGAAAATGTTTACACCCTTTTTAGGTGAAATTTTTTATATGAAAAATACAAAAT
129 TTTTTTGTGTGTGAAAATGTTTACACCCTTTTTAGGTGAAATTTTTGATATGAAAAATACAAAAT
* * **
34865359 TAGACAGTTGTTTAAAATTTAAAGTAAATGACAAAAAAAGGAAAATAAAATAATTTTTTTTGGTA
194 TAGACAGTTGTGTAAAATTTAAAGTAAATGAC-AAAAAAGAAAAATAAAATAATTTCATTTGGTA
*
34865424 TTTTTGTTCAGAAAATCCTT-A-A-TTGATA-AGG
258 TTTTTGCTCAGAAAATCCTTCATAGTTGATACAGG
* *
34865455 T-AGATTTTATGATATGATGAACGTAAAATCAGATTATTTTATAAAATTTTATTTAAATGACAAA
1 TGA-ATTTTTTGATATGATGAACGTAAAATCAGA-TATTTTATAAAATTTTAATTAAATGACAAA
*
34865519 AAAGGAAACAAAATAATTTCTTTTGGTA-TTTTCTTTAGAAAATCCTTGATTGATATTTATATCT
64 AAAGGAAACAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCCTTGATTGATGTTTATA---
* *
34865583 CTCTTTCTTTCTTTTTTTTGTGTGAAAATGTTTATACCC-TTTTA-GTCG-AATATTTTGATATG
126 --C---C--T-TTTTTTGTGTGTGAAAATGTTTACACCCTTTTTAGGT-GAAAT-TTTTGATATG
* *
34865645 ATGAACT-CAAAATTAGACAGTTGTGTAAAATTTAAAGTAAATGACAAAAAAGAAAAATAAAATA
181 A-AAAATACAAAATTAGACAGTTGTGTAAAATTTAAAGTAAATGACAAAAAAGAAAAATAAAATA
* * *
34865709 ATTTCATTTGTTATTTTTGCTCGGAAAATCCTTCATTGATGTTTATACCCCTTTTAGG
245 ATTTCATTTGGTATTTTTGCTCAGAAAATCCTTCA-T-A-GTTGATA---C----AGG
* * * * *
34865767 TGAATTTTTTGTTATGATGAAAC-TAAAATCAAACTATATTGTAAAATTTTACTTAAATGACAAA
1 TGAATTTTTTGATATGATG-AACGTAAAATCAGA-TATTTTATAAAATTTTAATTAAATGACAAA
* *
34865831 AAAGGAAAGCAAAATAATTTCTTTTGGTATTTTTCTTCAGAAAATCCTTGATTAATGTTTAT
64 AAAGGAAA-CAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCCTTGATTGATGTTTAT
34865893 TCCCCTTTTA
Statistics
Matches: 368, Mismatches: 34, Indels: 47
0.82 0.08 0.10
Matches are distributed among these distances:
288 1 0.00
289 78 0.21
290 25 0.07
291 6 0.02
294 1 0.00
297 1 0.00
298 51 0.14
299 55 0.15
300 29 0.08
302 1 0.00
304 5 0.01
312 62 0.17
313 24 0.07
314 29 0.08
ACGTcount: A:0.38, C:0.08, G:0.13, T:0.41
Consensus pattern (292 bp):
TGAATTTTTTGATATGATGAACGTAAAATCAGATATTTTATAAAATTTTAATTAAATGACAAAAA
AGGAAACAAAATAATTTCTTTTGGTATTTTTCTTTAGAAAATCCTTGATTGATGTTTATACCTTT
TTTTGTGTGTGAAAATGTTTACACCCTTTTTAGGTGAAATTTTTGATATGAAAAATACAAAATTA
GACAGTTGTGTAAAATTTAAAGTAAATGACAAAAAAGAAAAATAAAATAATTTCATTTGGTATTT
TTGCTCAGAAAATCCTTCATAGTTGATACAGG
Found at i:34865783 original size:138 final size:136
Alignment explanation
Indices: 34865610--34866028 Score: 490
Period size: 138 Copynumber: 3.0 Consensus size: 136
34865600 TTGTGTGAAA
* *
34865610 ATGTTTATA-CCCTTTTA-GTCGAATATTTTGATATGATGAACTCAAAATTAGAC-AGTTGTGTA
1 ATGTTTATACCCCTTTTAGGT-GAATTTTTTGATATGATGAACTCAAAATTAAACTA-TT-TGTA
* * *
34865672 AAATTTAAAGTAAATGACAAAAAAGAAAAATAAAATAATTTCATTTGTTATTTTTGCTCGGAAAA
63 AAATTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTT-CTCGGAAAA
*
34865737 TCCTTCATTG
127 TCCTTAATTG
* *
34865747 ATGTTTATACCCCTTTTAGGTGAATTTTTTGTTATGATGAAACT-AAAATCAAACTATATTGTAA
1 ATGTTTATACCCCTTTTAGGTGAATTTTTTGATATGATG-AACTCAAAATTAAACTAT-TTGTAA
* ** * * * *
34865811 AATTTTACTTAAATGACAAAAAAGGAAAGCAAAATAATTTCTTTTGGTATTTTTCTTCAGAAAAT
64 AATTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTTC-TCGGAAAAT
* *
34865876 CCTTGATTA
128 CCTTAATTG
* *
34865885 ATGTTTATTCCCCTTTTAGGTGAATTTTTAGATATGATGAA-TGCAAAATTAAACTATTCTGTAA
1 ATGTTTATACCCCTTTTAGGTGAATTTTTTGATATGATGAACT-CAAAATTAAACTATT-TGTAA
* *
34865949 AATTTAAAGTAAAT-AGCAAAAAAAGGAAAAGTAGAATAATTTCTTTTGATATTTTTCTTGAGAA
64 AATTTAAAGTAAATGA-C-AAAAAA-GAAAAGTAAAATAATTTCTTTTGATATTTTTCTCG-GAA
34866013 AATCCTTAATTG
125 AATCCTTAATTG
34866025 ATGT
1 ATGT
34866029 ATAATTATCT
Statistics
Matches: 239, Mismatches: 30, Indels: 23
0.82 0.10 0.08
Matches are distributed among these distances:
136 1 0.00
137 14 0.06
138 164 0.69
139 15 0.06
140 45 0.19
ACGTcount: A:0.39, C:0.10, G:0.13, T:0.39
Consensus pattern (136 bp):
ATGTTTATACCCCTTTTAGGTGAATTTTTTGATATGATGAACTCAAAATTAAACTATTTGTAAAA
TTTAAAGTAAATGACAAAAAAGAAAAGTAAAATAATTTCTTTTGATATTTTTCTCGGAAAATCCT
TAATTG
Found at i:34871685 original size:17 final size:18
Alignment explanation
Indices: 34871647--34871686 Score: 57
Period size: 17 Copynumber: 2.3 Consensus size: 18
34871637 CTAGCATAGC
34871647 ATTTATTTTATTTTATCT
1 ATTTATTTTATTTTATCT
*
34871665 -TTTATTTTA-TTTATTT
1 ATTTATTTTATTTTATCT
34871681 ATTTAT
1 ATTTAT
34871687 CTATCATTTT
Statistics
Matches: 20, Mismatches: 1, Indels: 3
0.83 0.04 0.12
Matches are distributed among these distances:
16 6 0.30
17 14 0.70
ACGTcount: A:0.23, C:0.03, G:0.00, T:0.75
Consensus pattern (18 bp):
ATTTATTTTATTTTATCT
Found at i:34876139 original size:88 final size:85
Alignment explanation
Indices: 34876023--34876454 Score: 309
Period size: 88 Copynumber: 5.0 Consensus size: 85
34876013 GACTCTCTAA
* * *
34876023 AAACAGACATTAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCT
1 AAACAGA-ATTAAAAGCAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCT
34876088 CGCAATATGAGTTGATTTTTTG
64 CGCAATATGAGTTGATTTTTTG
** * * * * *
34876110 AAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAAGGTTCAACTCACCT
1 AAACAGAA-TT-AAAAGCAGATATTGAAAATACCTCG-CACGTGAGC-CAAGGCTCAACTCACCT
34876174 CTCGCAATATGAGTTGA-TTTTTG
62 CTCGCAATATGAGTTGATTTTTTG
** * * * ** *** *
34876197 AAAAACAGAAATTAAAAGACTCA-ACT-CAACT--CTCGCA-GAAATTAAAAAGCTCAACTCACC
1 --AAACAG-AATTAAAAG-CAGATATTGAAAATACCTCGCACGTGA-GCCAAGGCTCAACTCACC
34876257 TCTCGCAATATGAGTTGAATTTTTTTG
61 TCTCGCAATATGAGTTG-A-TTTTTTG
* * *
34876284 --A-A-AA--AAAA-CAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTC
1 AAACAGAATTAAAAGCAGATATTGAAAATACCTC-GCACGTGAGCCAAGGCTCAACTCACCTCTC
34876342 GCAATATGAGTTGA-TTTTTG
65 GCAATATGAGTTGATTTTTTG
* * * * * *
34876362 AAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGAGGCTCAACTCACAT
1 -AAACAGAAT-T-AAAAGCAGATATTGAAAATACCTCG-CACGTGAGCCAAGGCTCAACTCACCT
*
34876427 CTCGCAATGTGAGTTGATTTTTTTG
62 CTCGCAATATGAGTTGA-TTTTTTG
34876452 AAA
1 AAA
34876455 AATATAAATT
Statistics
Matches: 268, Mismatches: 45, Indels: 62
0.71 0.12 0.17
Matches are distributed among these distances:
76 2 0.01
77 2 0.01
78 13 0.05
80 6 0.02
81 34 0.13
82 4 0.01
83 5 0.02
84 31 0.12
85 5 0.02
86 1 0.00
87 29 0.11
88 117 0.44
89 11 0.04
90 8 0.03
ACGTcount: A:0.38, C:0.19, G:0.16, T:0.27
Consensus pattern (85 bp):
AAACAGAATTAAAAGCAGATATTGAAAATACCTCGCACGTGAGCCAAGGCTCAACTCACCTCTCG
CAATATGAGTTGATTTTTTG
Found at i:34876238 original size:30 final size:30
Alignment explanation
Indices: 34876202--34876263 Score: 99
Period size: 30 Copynumber: 2.1 Consensus size: 30
34876192 TTTTGAAAAA
34876202 CAGAAATT-AAAAGACTCAACTCAACTCTCG
1 CAGAAATTAAAAAG-CTCAACTCAACTCTCG
*
34876232 CAGAAATTAAAAAGCTCAACTCACCTCTCG
1 CAGAAATTAAAAAGCTCAACTCAACTCTCG
34876262 CA
1 CA
34876264 ATATGAGTTG
Statistics
Matches: 30, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
30 25 0.83
31 5 0.17
ACGTcount: A:0.42, C:0.29, G:0.10, T:0.19
Consensus pattern (30 bp):
CAGAAATTAAAAAGCTCAACTCAACTCTCG
Found at i:34876502 original size:79 final size:77
Alignment explanation
Indices: 34876373--34876971 Score: 392
Period size: 79 Copynumber: 7.7 Consensus size: 77
34876363 AAACAGAATC
** * * * *
34876373 TGAAAAACAGATTTTGAAAATACCTC-GACATGTGACCCGAGGCTCAACTCACATCTCGCAATGT
1 TGAAAAACAGAAATTGAAAATACCTCAG-CGTGTGACCTGAGGCTCAACTCACCTCTCGCAATAT
34876437 GAGTTGATTTTTT
65 GAGTTGATTTTTT
* * * * *
34876450 TGAAAAATATAAATTGAAAAAATACCTCAGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATA
1 TGAAAAACAGAAATTG--AAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
34876515 TGAGTTGATTTTTT
64 TGAGTTGATTTTTT
* * * *
34876529 TGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCGCAATAT
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGA-CCTGAGGCTCAACTCACCTCTCGCAATAT
34876593 GAGTTGATTTTTTTT
65 GAGTTGA--TTTTTT
** ** *** * * *
34876608 TGAAAGGCAGAAATTGAAAA-A-CGGAAATTGAAAAT-ACCTCGGCGTGTGACCTGAGGCTCAAC
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTG----TGACCT----GAG-G--CTCA-ACTC-AC
* * ** *
34876670 TCGCTTCTCACAAT-A--CGAGTTGATTTT
53 -CTC-TCGCAATATGAGTTGA-TT--TTTT
* *
34876697 TTTG-ACAACAGAAATTGAAATTACCTCAGCGTGT--CCTGAGGCTCAACTCACCTCTCGCAATA
1 --TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATA
34876759 TGAGTTGATTTTTT
64 TGAGTTGATTTTTT
* * ** *
34876773 TGAAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTCATTTCTCACAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
34876836 AGTTGATTTTTTTTT
66 AGTTGA---TTTTTT
* * * **
34876851 TGAAAAACAGAAATTGAAAATACCTCAGCATGT--CTTGAGGCTCAACTAATTTCTCGCAATATG
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
*
34876914 AGTTGA--ATTT
66 AGTTGATTTTTT
* *
34876924 TG-AAAACAGAAATTGAAATTACCTCAGCGTGT--CTTGAGGCTCAACTCA
1 TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCA
34876972 TTTTGAACAG
Statistics
Matches: 420, Mismatches: 67, Indels: 75
0.75 0.12 0.13
Matches are distributed among these distances:
72 43 0.10
73 5 0.01
74 2 0.00
75 59 0.14
76 10 0.02
77 65 0.15
78 79 0.19
79 97 0.23
80 5 0.01
81 1 0.00
82 1 0.00
83 2 0.00
84 1 0.00
85 1 0.00
87 8 0.02
88 6 0.01
89 6 0.01
90 16 0.04
91 9 0.02
92 4 0.01
ACGTcount: A:0.33, C:0.19, G:0.18, T:0.30
Consensus pattern (77 bp):
TGAAAAACAGAAATTGAAAATACCTCAGCGTGTGACCTGAGGCTCAACTCACCTCTCGCAATATG
AGTTGATTTTTT
Found at i:34876690 original size:93 final size:93
Alignment explanation
Indices: 34876528--34876699 Score: 238
Period size: 93 Copynumber: 1.8 Consensus size: 93
34876518 GTTGATTTTT
* * * *
34876528 TTGAAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
34876593 GAGTTGATTTTTTTTTGAAAGGCAGAAA
66 GAGTTGATTTTTTTTTGAAAGGCAGAAA
* * * * * *
34876621 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGA-CCTGAGGCTCAACTCGCTTCTCACAATA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCC-AAGGCTCAACTCACCTCTCACAATA
34876685 CGAGTTGATTTTTTT
65 CGAGTTGATTTTTTT
34876700 GACAACAGAA
Statistics
Matches: 68, Mismatches: 10, Indels: 2
0.85 0.12 0.03
Matches are distributed among these distances:
92 2 0.03
93 66 0.97
ACGTcount: A:0.32, C:0.19, G:0.21, T:0.28
Consensus pattern (93 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCACAATAC
GAGTTGATTTTTTTTTGAAAGGCAGAAA
Found at i:34876743 original size:244 final size:237
Alignment explanation
Indices: 34876034--34876971 Score: 976
Period size: 253 Copynumber: 3.9 Consensus size: 237
34876024 AACAGACATT
34876034 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
** * ** * *
34876099 TTGATTTTTTGAAACTTAACTTGAAAAGCAGATTTTGAAAATACCTCGATATGTGA-CTGAAGGT
66 TTGATTTTTTGAAACAGAA-TTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCTG-AGGC
* * * * *
34876163 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTAAAAGACTCAACTCAAC-
129 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATT-GAA-A-TTACCTCAGCG
* *
34876227 TCTCGCAGAAATTAAAAAGCTCAACTCACCTCTCGCAATATGAGTTGAATTTTTTTG
191 TGTC-C------T--GAAGCTCAACTCACCTCTCGCAATATGAGTTG-ATTTTTTTG
*
34876284 AAAAAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACTTCTCGCAATAT
1 ---AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATAT
** *
34876349 GAGTTGA-TTTTTGAAAACAGAATCTGAAAAACAGATTTTGAAAATACCTCGACATGTGACCCGA
63 GAGTTGATTTTTTG-AAACAGAAT-TGAAAAACAGAAATTGAAAATACCTCGACATGTGACCTGA
* * * * *
34876413 GGCTCAACTCACATCTCGCAATGTGAGTTGATTTTTTTGAAAAATATAAATTGAAAAAATACCTC
126 GGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTG--AAATTACCTC
* *
34876478 AGTGTGTGATCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
187 AGCGTGT--CCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* *
34876531 AAAGACAGAAATTGAAAATAGCTCAGCGCGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
* * *
34876596 TTGATTTTTTTTTGAAAGGCAGAAATTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTG
66 TTGA---TTTTTTGAAA--CAG-AATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCTG
* * * *
34876661 AGGCTCAACTCGCTTCTCACAATACGAGTTGATTTTTTTG-ACAACAGAAATTGAAATTACCTCA
125 AGGCTCAACTCACTTCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTGAAATTACCTCA
*
34876725 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
188 GCGTGTCCTGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
* * ** ** *
34876775 AAAAACAGAAATTGAAAATACCTCAGCA--TG-TCTTGAGGCTCAACTCATTTCTCACAATATGA
1 AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGC-CAAGGCTCAACTCACCTCTCGCAATATGA
** *
34876837 GTTGATTTTTT-------TTTTGAAAAACAGAAATTGAAAATACCTC-AGCATGT--CTTGAGGC
65 GTTGATTTTTTGAAACAGAATTGAAAAACAGAAATTGAAAATACCTCGA-CATGTGACCTGAGGC
* * *
34876892 TCAACTAATTTCTCGCAATATGAGTTGAATTTTG-AAAACAGAAATTGAAATTACCTCAGCGTGT
129 TCAACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGT
* *
34876956 CTTGAGGCTCAACTCA
194 CCTGAAGCTCAACTCA
34876972 TTTTGAACAG
Statistics
Matches: 602, Mismatches: 64, Indels: 66
0.82 0.09 0.09
Matches are distributed among these distances:
225 49 0.08
227 30 0.05
229 30 0.05
239 6 0.01
241 1 0.00
242 31 0.05
244 133 0.22
246 15 0.02
247 12 0.02
248 47 0.08
249 71 0.12
250 4 0.01
252 7 0.01
253 136 0.23
254 7 0.01
255 20 0.03
256 3 0.00
ACGTcount: A:0.35, C:0.19, G:0.17, T:0.29
Consensus pattern (237 bp):
AAAAACAGAAATTGAAAATAGCTCAGCACGTGAGCCAAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTGAAACAGAATTGAAAAACAGAAATTGAAAATACCTCGACATGTGACCTGAGGCTC
AACTCACTTCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTGAAATTACCTCAGCGTGTCC
TGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTG
Found at i:34876878 original size:78 final size:75
Alignment explanation
Indices: 34876621--34876974 Score: 473
Period size: 78 Copynumber: 4.7 Consensus size: 75
34876611 AAGGCAGAAA
* * * ** *
34876621 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCTTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAT
34876686 GAGTTGATTTTT
64 GAGTTGATTTTT
* * * ** *
34876698 TTG-ACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
34876762 GTTGATTTTT
66 GTTGATTTTT
*
34876772 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
34876837 GTTGATTTTTTTT
66 GTTGA---TTTTT
* * *
34876850 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATTTCTCGCAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
*
34876915 GTTGA--ATT
66 GTTGATTTTT
*
34876923 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
34876975 TGAACAGAAA
Statistics
Matches: 252, Mismatches: 21, Indels: 13
0.88 0.07 0.05
Matches are distributed among these distances:
72 46 0.18
73 5 0.02
74 40 0.16
75 59 0.23
76 26 0.10
77 3 0.01
78 73 0.29
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (75 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATATGA
GTTGATTTTT
Found at i:34876897 original size:153 final size:147
Alignment explanation
Indices: 34876621--34876974 Score: 485
Period size: 153 Copynumber: 2.4 Consensus size: 147
34876611 AAGGCAGAAA
* * * **
34876621 TTGAAAAACGGAAATTGAAAATACCTCGGCGTGTGACCTGAGGCTCAACTCGCTTCTCACAATAC
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGT--CTTGAGGCTCAACTCATTTCTCACAATAC
* * * *
34876686 GAGTTGATTTTTTTGACAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTC
64 GAGTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTC
*
34876751 TCGCAATATGAGTTGATTTTT
129 TCGCAATATGAGTTGA--ATT
* *
34876772 TTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGA
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
* **
34876837 GTTGATTTTTTTTTTGAAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTAATT
66 GTTGA---TTTTTTTG-AAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACC
34876902 TCTCGCAATATGAGTTGAATT
127 TCTCGCAATATGAGTTGAATT
*
34876923 TTG-AAAACAGAAATTGAAATTACCTCAGCGTGTCTTGAGGCTCAACTCATTT
1 TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTT
34876975 TGAACAGAAA
Statistics
Matches: 182, Mismatches: 17, Indels: 9
0.88 0.08 0.04
Matches are distributed among these distances:
149 32 0.18
150 47 0.26
151 36 0.20
152 8 0.04
153 59 0.32
ACGTcount: A:0.32, C:0.19, G:0.17, T:0.31
Consensus pattern (147 bp):
TTGAAAAACAGAAATTGAAAATACCTCAGCGTGTCTTGAGGCTCAACTCATTTCTCACAATACGA
GTTGATTTTTTTGAAAACAGAAATTGAAAATACCTCAGCATGTCCTGAGGCTCAACTAACCTCTC
GCAATATGAGTTGAATT
Found at i:34877241 original size:78 final size:74
Alignment explanation
Indices: 34877099--34877249 Score: 214
Period size: 78 Copynumber: 2.0 Consensus size: 74
34877089 ACAACGTAAA
* **
34877099 TTGAAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCAGCATGTCTCGAGGCTCAACTCACCTCTCGCAATATGAG
*
34877164 TTGAATTTTT
66 CTG-ATTTTT
34877174 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAAC-CGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCATGT---CTCGAGGCTCAACTCACCTCTCGCAATA
34877238 TGAGCTGATTTT
62 TGAGCTGATTTT
34877250 GAAAAAGTAA
Statistics
Matches: 68, Mismatches: 4, Indels: 6
0.87 0.05 0.08
Matches are distributed among these distances:
75 6 0.09
76 27 0.40
77 5 0.07
78 29 0.43
79 1 0.01
ACGTcount: A:0.34, C:0.20, G:0.17, T:0.29
Consensus pattern (74 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCATGTCTCGAGGCTCAACTCACCTCTCGCAATATGAG
CTGATTTTT
Found at i:34877437 original size:142 final size:142
Alignment explanation
Indices: 34877174--34877531 Score: 641
Period size: 142 Copynumber: 2.5 Consensus size: 142
34877164 TTGAATTTTT
34877174 TTGAAAGACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
1 TTGAAA-ACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATAT
34877239 GAGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
65 GAGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCT
* *
34877304 TGAACGACGTAAA
130 TGAACAACGCAAA
34877317 TTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATG
1 TTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATG
34877382 AGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
66 AGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
34877447 GAACAACGCAAA
131 GAACAACGCAAA
*
34877459 TTGAAAACAGAAATTGAAAATACCTCAGC--GTG-ACCTGAGGCTCAACTCACCTCTCACAATAT
1 TTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACC-GAGGCTCAACTCACCTCTCGCAATAT
*
34877521 GAGTTGATTTT
65 GAGCTGATTTT
34877532 TTTTTTGAAA
Statistics
Matches: 210, Mismatches: 4, Indels: 5
0.96 0.02 0.02
Matches are distributed among these distances:
139 3 0.01
140 38 0.18
142 163 0.78
143 6 0.03
ACGTcount: A:0.37, C:0.21, G:0.17, T:0.25
Consensus pattern (142 bp):
TTGAAAACAGAAATTGAAAATACCTCAGCATGTGAACCGAGGCTCAACTCACCTCTCGCAATATG
AGCTGATTTTGAAAAAGTAAAAATTAAAAGGTTCAACCCACCTCTCGCAATATGAGTTGATTCTT
GAACAACGCAAA
Found at i:34877553 original size:78 final size:78
Alignment explanation
Indices: 34877462--34877755 Score: 543
Period size: 78 Copynumber: 3.8 Consensus size: 78
34877452 ACGCAAATTG
* * * **
34877462 AAAACAGAAATTGAAAATACCTCAGCGTGACCTGAGGCTCAACTCACCTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
34877527 ATTTTTTTTTTGA
66 ATTTTTTTTTTGA
34877540 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
34877605 ATTTTTTTTTTGA
66 ATTTTTTTTTTGA
34877618 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
34877683 ATTTTTTTTTTGA
66 ATTTTTTTTTTGA
34877696 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATG
1 AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATG
34877756 CAAGGCTCAA
Statistics
Matches: 211, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
78 211 1.00
ACGTcount: A:0.34, C:0.19, G:0.14, T:0.33
Consensus pattern (78 bp):
AAAACAGAAATTGAAAATACCTCAGCATGTCTTGAGGCTCAACTCATTTCTCACAATATGAGTTG
ATTTTTTTTTTGA
Found at i:34877780 original size:28 final size:28
Alignment explanation
Indices: 34877730--34877783 Score: 72
Period size: 28 Copynumber: 1.9 Consensus size: 28
34877720 GCATGTCTTG
**
34877730 AGGCTCAACTCATTTCTCACAATATGCA
1 AGGCTCAACTCACCTCTCACAATATGCA
**
34877758 AGGCTCAACTCACCTCTTGCAATATG
1 AGGCTCAACTCACCTCTCACAATATG
34877784 AGTTGATTTT
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
28 22 1.00
ACGTcount: A:0.30, C:0.30, G:0.13, T:0.28
Consensus pattern (28 bp):
AGGCTCAACTCACCTCTCACAATATGCA
Found at i:34877953 original size:71 final size:70
Alignment explanation
Indices: 34877810--34877984 Score: 228
Period size: 71 Copynumber: 2.5 Consensus size: 70
34877800 AAAAATTAAA
* * * * * *
34877810 AGGCTTAACTCACCTCTCGCAATATGAG-TCAATTTAAAACATAAACTAAAAATACCTCAGCGTG
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
34877874 CCCCG
66 CCCCG
*
34877879 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTGAAAACAAAAATTAAAAATACCTCAACGT
1 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTT-AAAACAAAAACTAAAAATACCTCAACGT
* **
34877944 GTCTTG
65 GCCCCG
34877950 AGGCTCAACTCA-TCTCTCGCAATATGAGTTGATTT
1 AGGCTCAACTCACT-TCTCGCAATATGAGTTGATTT
34877985 CCCTTGAAAA
Statistics
Matches: 93, Mismatches: 10, Indels: 4
0.87 0.09 0.04
Matches are distributed among these distances:
69 26 0.28
70 6 0.06
71 61 0.66
ACGTcount: A:0.34, C:0.23, G:0.14, T:0.28
Consensus pattern (70 bp):
AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTTAAAACAAAAACTAAAAATACCTCAACGTG
CCCCG
Found at i:34878656 original size:48 final size:48
Alignment explanation
Indices: 34878580--34878675 Score: 165
Period size: 48 Copynumber: 2.0 Consensus size: 48
34878570 AGAAAGAAAG
34878580 GATCATATTCAACGGATACAAAAGCTCTAGATATTCAACACATGAACT
1 GATCATATTCAACGGATACAAAAGCTCTAGATATTCAACACATGAACT
* * *
34878628 GATCGTATTCAATGGATACAAATGCTCTAGATATTCAACACATGAACT
1 GATCATATTCAACGGATACAAAAGCTCTAGATATTCAACACATGAACT
34878676 CTTCCTCGTT
Statistics
Matches: 45, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
48 45 1.00
ACGTcount: A:0.40, C:0.20, G:0.14, T:0.27
Consensus pattern (48 bp):
GATCATATTCAACGGATACAAAAGCTCTAGATATTCAACACATGAACT
Found at i:34886875 original size:39 final size:38
Alignment explanation
Indices: 34886821--34886897 Score: 136
Period size: 39 Copynumber: 2.0 Consensus size: 38
34886811 TCGGTTGTTT
*
34886821 GTATAATTGACTCTTCCATTAGAAACCCGTTTTTTGGC
1 GTATAATTAACTCTTCCATTAGAAACCCGTTTTTTGGC
34886859 NGTATAATTAACTCTTCCATTAGAAACCCGTTTTTTGGC
1 -GTATAATTAACTCTTCCATTAGAAACCCGTTTTTTGGC
34886898 AACCGATCTC
Statistics
Matches: 37, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
39 37 1.00
ACGTcount: A:0.25, C:0.21, G:0.14, T:0.39
Consensus pattern (38 bp):
GTATAATTAACTCTTCCATTAGAAACCCGTTTTTTGGC
Found at i:34890534 original size:25 final size:27
Alignment explanation
Indices: 34890497--34890547 Score: 70
Period size: 26 Copynumber: 2.0 Consensus size: 27
34890487 TCAAACATGC
34890497 ATTTAGGTCAATTTAAC-CCTAGGGGT
1 ATTTAGGTCAATTTAACTCCTAGGGGT
* *
34890523 ATTTCGGT-AATTTATCTCCTAGGGG
1 ATTTAGGTCAATTTAACTCCTAGGGG
34890548 CAAAACTGTA
Statistics
Matches: 22, Mismatches: 2, Indels: 2
0.85 0.08 0.08
Matches are distributed among these distances:
25 7 0.32
26 15 0.68
ACGTcount: A:0.24, C:0.16, G:0.24, T:0.37
Consensus pattern (27 bp):
ATTTAGGTCAATTTAACTCCTAGGGGT
Found at i:34892075 original size:26 final size:26
Alignment explanation
Indices: 34892037--34892094 Score: 98
Period size: 26 Copynumber: 2.2 Consensus size: 26
34892027 CATGAAATTC
34892037 TTATCATGAAACATTTACCTAACCCA
1 TTATCATGAAACATTTACCTAACCCA
* *
34892063 TTATCATGGAACATTTACCTAACCTA
1 TTATCATGAAACATTTACCTAACCCA
34892089 TTATCA
1 TTATCA
34892095 ATTTGTATCA
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 30 1.00
ACGTcount: A:0.36, C:0.24, G:0.05, T:0.34
Consensus pattern (26 bp):
TTATCATGAAACATTTACCTAACCCA
Found at i:34894508 original size:23 final size:23
Alignment explanation
Indices: 34894464--34894523 Score: 59
Period size: 23 Copynumber: 2.6 Consensus size: 23
34894454 GCCCATTAAG
**
34894464 CCCCCCCAAAAAAAACCTAACCC
1 CCCCCCCAAAAAAAACAAAACCC
*
34894487 CCCCCCCAAAAAAAGA-AAAACCT
1 CCCCCCCAAAAAAA-ACAAAACCC
**
34894510 AACCCCCAAAAAAA
1 CCCCCCCAAAAAAA
34894524 CCAAGAAACC
Statistics
Matches: 31, Mismatches: 5, Indels: 2
0.82 0.13 0.05
Matches are distributed among these distances:
23 30 0.97
24 1 0.03
ACGTcount: A:0.52, C:0.43, G:0.02, T:0.03
Consensus pattern (23 bp):
CCCCCCCAAAAAAAACAAAACCC
Found at i:34896784 original size:11 final size:13
Alignment explanation
Indices: 34896758--34896789 Score: 50
Period size: 11 Copynumber: 2.6 Consensus size: 13
34896748 TTTGCATATT
34896758 CATTCATGTCTGA
1 CATTCATGTCTGA
34896771 CATTCAT-T-TGA
1 CATTCATGTCTGA
34896782 CATTCATG
1 CATTCATG
34896790 CATTCATTCA
Statistics
Matches: 18, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
11 10 0.56
12 1 0.06
13 7 0.39
ACGTcount: A:0.25, C:0.22, G:0.12, T:0.41
Consensus pattern (13 bp):
CATTCATGTCTGA
Found at i:34896799 original size:12 final size:12
Alignment explanation
Indices: 34896782--34896817 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
34896772 ATTCATTTGA
34896782 CATTCATGCATT
1 CATTCATGCATT
34896794 CATTCATGCATT
1 CATTCATGCATT
*
34896806 CATTCATACATT
1 CATTCATGCATT
34896818 GCATATCCCA
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.28, C:0.25, G:0.06, T:0.42
Consensus pattern (12 bp):
CATTCATGCATT
Found at i:34901230 original size:75 final size:75
Alignment explanation
Indices: 34901075--34901410 Score: 577
Period size: 75 Copynumber: 4.5 Consensus size: 75
34901065 TGTGAACCCA
* * * * * *
34901075 AGGCTCAACTCACATCTCGCAATATGAGTTGA--TTTTTGAAAAACAGAAATTTAAAAATACCTC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAA-TTGAAATTACCTC
34901138 AGCGTGTCCTG
65 AGCGTGTCCTG
34901149 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
34901214 GCGTGTCCTG
66 GCGTGTCCTG
34901224 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
34901289 GCGTGTCCTG
66 GCGTGTCCTG
34901299 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
34901364 GCGTGTCCTG
66 GCGTGTCCTG
* *
34901374 AGGCTCAACTCACCTCTAGCAATATGAGTCGATTTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
34901411 GAAAAACAAA
Statistics
Matches: 252, Mismatches: 8, Indels: 3
0.96 0.03 0.01
Matches are distributed among these distances:
74 31 0.12
75 207 0.82
76 14 0.06
ACGTcount: A:0.30, C:0.21, G:0.16, T:0.32
Consensus pattern (75 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
GCGTGTCCTG
Found at i:34901321 original size:150 final size:148
Alignment explanation
Indices: 34901075--34901804 Score: 776
Period size: 150 Copynumber: 4.7 Consensus size: 148
34901065 TGTGAACCCA
* *
34901075 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAA-AACAGAAATTTAAAAATACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-AAACAACAGAAA-TTGAAAATACCTCA
34901139 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGA
64 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGA
34901204 AATTACCTCAGCGTGTCCTG
129 AATTACCTCAGCGTGTCCTG
* * *
34901224 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTAAACAACAGAAATTGAAAATACCTCA
34901289 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGA
64 GCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGA
34901354 AATTACCTCAGCGTGTCCTG
129 AATTACCTCAGCGTGTCCTG
* *
34901374 AGGCTCAACTCACCTCTAGCAATATGAGTCGATTTTTGAAAAACAAAAATTGAAAACCAGAAATT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT---AAAC----------AA-CAGAAATT
* * * * *
34901439 GAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGAT
52 GAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-TT
* * **
34901503 GAAC-AT--AAATTAAAACCACCTCAGCGTGTCCTG
113 TAACAATAGAAATTGAAATTACCTCAGCGTGTCCTG
* * *
34901536 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT-GACAAACAAAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAAC-AACAGAAATTGAAAATACCTCAG
* *
34901600 C--GTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTTTTTGAAACATAAATTAAA
65 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTTTT--AAC---AA-T---
*
34901663 AAAAGGAAAATTGAAAATACCTCAGCGTGTCCTG
120 ---A-G-AAATTGAAATTACCTCAGCGTGTCCTG
** * * *
34901697 AGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAAAC-ACAAAAATTGAAAATACCTTAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAACAACAGAAATTGAAAATACCTCAGC
* * * *
34901761 GTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTT
66 GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
34901805 GAAAAAGTAG
Statistics
Matches: 491, Mismatches: 47, Indels: 74
0.80 0.08 0.12
Matches are distributed among these distances:
143 1 0.00
144 32 0.07
145 2 0.00
146 5 0.01
148 25 0.05
149 34 0.07
150 130 0.26
151 16 0.03
158 2 0.00
160 21 0.04
161 61 0.12
162 120 0.24
164 36 0.07
165 6 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (148 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTAAACAACAGAAATTGAAAATACCTCAGC
GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAA
TTACCTCAGCGTGTCCTG
Found at i:34901428 original size:14 final size:14
Alignment explanation
Indices: 34901409--34901443 Score: 52
Period size: 14 Copynumber: 2.5 Consensus size: 14
34901399 GAGTCGATTT
34901409 TTGAAAAACAAAAA
1 TTGAAAAACAAAAA
* *
34901423 TTGAAAACCAGAAA
1 TTGAAAAACAAAAA
34901437 TTGAAAA
1 TTGAAAA
34901444 TACCTCAGCG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.63, C:0.09, G:0.11, T:0.17
Consensus pattern (14 bp):
TTGAAAAACAAAAA
Found at i:34901498 original size:89 final size:86
Alignment explanation
Indices: 34901345--34901520 Score: 230
Period size: 89 Copynumber: 2.0 Consensus size: 86
34901335 TTTTAACAAT
* * *
34901345 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTCGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTAGCAATATGAGTCAATTTT
34901410 TGAAAAACAAAAATTGAAAACC
66 TGAAAAACAAAAATT-AAAACC
*
34901432 AGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAG-CTAA
1 AGAAATTGAAAATACCTCAGCGTGT---CCTAAGGCTCAACTCACCTCTAGCAATATGAGTC-AA
** *
34901495 TTTTTGATGAACATAAATTAAAACC
62 TTTTTGAAAAACAAAAATTAAAACC
34901520 A
1 A
34901521 CCTCAGCGTG
Statistics
Matches: 78, Mismatches: 7, Indels: 7
0.85 0.08 0.08
Matches are distributed among these distances:
87 24 0.31
88 8 0.10
89 44 0.56
90 2 0.03
ACGTcount: A:0.38, C:0.20, G:0.16, T:0.26
Consensus pattern (86 bp):
AGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTAGCAATATGAGTCAATTTT
TGAAAAACAAAAATTAAAACC
Found at i:34901537 original size:162 final size:161
Alignment explanation
Indices: 34901270--34901590 Score: 459
Period size: 162 Copynumber: 2.0 Consensus size: 161
34901260 TTTTAACAAT
* * * *
34901270 AGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
1 AGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTT
* * * **
34901335 TTTTAACAATAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATG
66 TATGAACAATA-AAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATG
34901400 AGTCGATTTTTGAAAAACAAAAATTGAAAACC
130 AGTCGATTTTTGAAAAACAAAAATTGAAAACC
*
34901432 AGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGCTAAT
1 AGAAATTGAAAATACCTCAGCGTGT---CCTAAGGCTCAACTCACCTCTCGCAATATGAGCTAAT
*
34901496 TTTTGATGAAC-AT-AAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAAT
63 TTTT-ATGAACAATAAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAAT
* *
34901559 ATGAGTTGATTTTTGACAAACAAAAATTGAAA
127 ATGAGTCGATTTTTGAAAAACAAAAATTGAAA
34901591 TTACCTCAGC
Statistics
Matches: 142, Mismatches: 13, Indels: 8
0.87 0.08 0.05
Matches are distributed among these distances:
162 100 0.70
164 36 0.25
165 6 0.04
ACGTcount: A:0.35, C:0.21, G:0.16, T:0.28
Consensus pattern (161 bp):
AGAAATTGAAAATACCTCAGCGTGTCCTAAGGCTCAACTCACCTCTCGCAATATGAGCTAATTTT
TATGAACAATAAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGA
GTCGATTTTTGAAAAACAAAAATTGAAAACC
Found at i:34901558 original size:73 final size:71
Alignment explanation
Indices: 34901463--34901663 Score: 249
Period size: 73 Copynumber: 2.8 Consensus size: 71
34901453 GTGTGAGCCA
* * *
34901463 AGGCTCAACTCACCTCTTGCAATATGAGCTAATTTTTGATGAACATAAATTAAAACCACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
34901528 GTGTCCTG
66 --GTCCTG
** * * **
34901536 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGC
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
*
34901601 GTCTTG
66 GTCCTG
* **
34901607 AGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTTTTTGAAACATAAATTAAAA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTT-TTGATG-AACATAAATTAAAA
34901664 AAAGGAAAAT
Statistics
Matches: 109, Mismatches: 17, Indels: 4
0.84 0.13 0.03
Matches are distributed among these distances:
71 39 0.36
72 2 0.02
73 68 0.62
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (71 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGATGAACATAAATTAAAACCACCTCAGC
GTCCTG
Found at i:34901649 original size:237 final size:227
Alignment explanation
Indices: 34901075--34901804 Score: 777
Period size: 233 Copynumber: 3.2 Consensus size: 227
34901065 TGTGAACCCA
* * * * *
34901075 AGGCTCAACTCACATCTCGCAATATGAGTTGATTTTTGAAAAACAGAAATTTAAAAATACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAACAACA-AAAATTGAAATTACCTCAG
* * * * *
34901140 CGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT---------TTTAACAATA
65 CG-GTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTCGATTTTTGAAACAAAAATTAAAAAAA
* *
34901196 GAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTT
129 GAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTT
* * *
34901261 TTTAACAATAGAAATTGAAATTACCTCAGCGTGTCCTG
194 ATAAAC-AT--AAATT-AAAATACCTCAGCGTGTCCTG
* * *
34901299 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAATTACCTCA
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGA--TTTTTGAACAACAAAAATTGAAATTACCTCA
34901364 GCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTCGATTTTTGAAAAACAAAAATTGAAA
64 GCG-GTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTCGATTTTTG--AAACAAAAATT-AAA
** * * *
34901429 ACCAGAAATTGAAAATACCTCAGCGTGTGAGCC-AAGGCTCAACTCACCTCTTGCAATATGAGCT
125 AAAAGAAATTGAAAATACCTCAGCGTGT---CCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* *
34901493 AATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTG
187 AATTTTT-ATAAACATAAATTAAAA-TACCTCAGCGTGTCCTG
34901536 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTG-ACAAACAAAAATTGAAATTACCTCAG
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAAC-AACAAAAATTGAAATTACCTCAG
* * * * *
34901600 C-GTCTTGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTTTTTGAAACATAAATTAAAA
65 CGGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTCGA----TTTTTGAAACAAAAATTAAAA
34901664 AAAGGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGA
126 AAA-G-AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT-A
* * * * * *
34901729 A--ATTAAAACACAAAAATTGAAAATACCTTAGCGTGCCCCG
188 ATTTTTATAA-ACATAAATT-AAAATACCTCAGCGTGTCCTG
* *
34901769 AGGCTCAACTCACCTCTTGCAATATGAGCTGATTTT
1 AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
34901805 GAAAAAGTAG
Statistics
Matches: 430, Mismatches: 46, Indels: 51
0.82 0.09 0.10
Matches are distributed among these distances:
224 31 0.07
225 59 0.14
226 10 0.02
232 2 0.00
233 93 0.22
234 39 0.09
235 40 0.09
236 28 0.07
237 86 0.20
239 36 0.08
240 6 0.01
ACGTcount: A:0.33, C:0.22, G:0.16, T:0.29
Consensus pattern (227 bp):
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTGAACAACAAAAATTGAAATTACCTCAGC
GGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTCGATTTTTGAAACAAAAATTAAAAAAAGA
AATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTAATTTTTAT
AAACATAAATTAAAATACCTCAGCGTGTCCTG
Found at i:34902054 original size:78 final size:75
Alignment explanation
Indices: 34901955--34902236 Score: 365
Period size: 78 Copynumber: 3.7 Consensus size: 75
34901945 GTAATCTGAA
*
34901955 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
*
34902020 CATGTAAACCGAG
66 CGTGT---CCGAG
* *
34902033 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAGAAATTGAAAATACCTCAA
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
*
34902098 CGTGTCTTGAG
66 CGTGTC-CGAG
** * * *
34902109 GCTCAACTCATTTCTCGCAATATAAGTTGA----ATTTTGAAAACAGAAATTGAAATTACCTCAG
1 GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
34902170 CGTGTCCTGAG
66 CGTGTCC-GAG
* **
34902181 GCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTTACGAACAGAAATTGAA
1 GCTCAACTCACCTCTCGCAATATAAGTTGA-TTTTTTTTTAAAAACAGAAATTGAA
34902237 GAACAGAAAT
Statistics
Matches: 179, Mismatches: 18, Indels: 15
0.84 0.08 0.07
Matches are distributed among these distances:
72 64 0.36
75 1 0.01
76 31 0.17
77 17 0.09
78 66 0.37
ACGTcount: A:0.33, C:0.20, G:0.15, T:0.32
Consensus pattern (75 bp):
GCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACCTCAG
CGTGTCCGAG
Found at i:34902242 original size:14 final size:14
Alignment explanation
Indices: 34902223--34902250 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
34902213 TTTTTTTTAC
34902223 GAACAGAAATTGAA
1 GAACAGAAATTGAA
34902237 GAACAGAAATTGAA
1 GAACAGAAATTGAA
34902251 AAGACCTCGG
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.57, C:0.07, G:0.21, T:0.14
Consensus pattern (14 bp):
GAACAGAAATTGAA
Found at i:34902258 original size:91 final size:91
Alignment explanation
Indices: 34902142--34902394 Score: 332
Period size: 91 Copynumber: 2.8 Consensus size: 91
34902132 AAGTTGAATT
* *
34902142 TTGAAAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
1 TTGAAAACAGAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
**
34902207 TTGATTTTTTTTTT-ACGAACAGAAA
66 TTGATTTTTTTTTTGAAAAACAGAAA
* ** * *
34902232 TTGAAGAACAGAAATTGAAAAGACCTCGGTTTGACCTGAGGCTCAACTCACCTCTCTCAATATGA
1 TTGAA-AACAGAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGA
34902297 GTTGATTTTTTTTTTGAAAAACAGAAA
65 GTTGATTTTTTTTTTGAAAAACAGAAA
* **
34902324 -TCAAAAGGC-TTAATTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATA
1 TTGAAAA--CAGAAATTGAAAATACCTCGGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATA
34902387 TGAGTTGA
62 TGAGTTGA
34902395 AATTAAAACA
Statistics
Matches: 140, Mismatches: 17, Indels: 9
0.84 0.10 0.05
Matches are distributed among these distances:
90 7 0.05
91 86 0.61
92 10 0.07
93 37 0.26
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30
Consensus pattern (91 bp):
TTGAAAACAGAAATTGAAAATACCTCGGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAG
TTGATTTTTTTTTTGAAAAACAGAAA
Found at i:34902479 original size:666 final size:644
Alignment explanation
Indices: 34901153--34902815 Score: 1903
Period size: 666 Copynumber: 2.5 Consensus size: 644
34901143 GTCCTGAGGC
* * * * * *
34901153 TCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTA-ACAATAGAAATTGAAATTACCTCAGCG
1 TCAACCCACCTCTCGCAATATGAATTGA--TTCTTGACA-AACAGAAATTGAAATTACCTCATCG
* *
34901217 TGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAGAAATTGAAAT
63 TGTCCCGAGGCTCAACTCACCTCTCGCAATATGA---GA-----TTT---GA-AGAAA-T-AAAT
* * *
34901282 TACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAACAATAG
114 TACCACAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAG
*
34901347 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTCGATTTTTG
179 AAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTT-
** * ** *
34901412 AAAAACAAAAATTGAAAACCAGAAATTGAAAATACCTCAGCGTGTGAGC-CAAGGCTCAACTCAC
243 ---------TTTTGAAAA-CAGAAATTGAAAATACCTCAACGTGT---CTTGAGGCTCAACTCAT
* * * *
34901476 CTCTTGCAATATGAGCT-AATTTTTGATGAACATAAATTAAAACCACCTCAGCGTGTCCTGAGGC
295 CTCTCGCAATATGAGTTGAA-TTTTGATAAACAGAAATTAAAACCACCTCAGCGTGTCCTGAGGC
** * *
34901540 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAATTACCTCAGCGTCT
359 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAAAAATTGAAAAGACCTCAGCGACC
* *
34901605 TGAGGCTCAACTCACTTCTCGCAATATGAGTTGATTTCTTTTTGAAACATAAATTAAAAAAAGGA
424 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTCTTTTTGAAACAGAAATT-AAAAAAGGA
34901670 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAA
488 AAATTGAAAATACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAA
*
34901735 AACACAAAAATTGAAAATACCTTAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTG
553 AACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTG
34901800 ATTTTGAAAAAGTAGAAATTAAAAGGT
618 ATTTTGAAAAAGTAGAAATTAAAAGGT
*
34901827 TCATCCCACCTCTCGCAATATGAATTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACCCACCTCTCGCAATATGAATTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
* * *
34901892 CCTGAGGCTCAACTCACCTCTCGCAATATGA-A-TTG-A-AAA-AAA-TACCACAGTGTGTAATC
66 CCCGAGGCTCAACTCACCTCTCGCAATATGAGATTTGAAGAAATAAATTACCACAGCGTGT--CC
* *
34901951 TGAAGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTTAAAAACAGAAATTGAAAATACC
129 TGAGGCTCAACTCACCTCTCGCAATATGAGTTGA-TTTTTTTTAAAAACAGAAATTGAAATTACC
* * *
34902016 TCAGCATGTAAACC-GAGGCTCAACTCACCTCTCGCAATATAAGTTGATTTTTTTTTGAAAACAG
193 TCAGCGTGT---CCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTTGAAAACAG
* *
34902080 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATTTCTCGCAATATAAGTTGAATTTTG
255 AAATTGAAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAATTTTG
* **
34902145 A-AAACAGAAATTGAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
320 ATAAACAGAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
* * *
34902209 GATTTTTTTTTTACGAACAGAAATTGAAGAACAGAAATTGAAAAGACCTCGGTTTGACCTGAGGC
385 GA-----TTTTT--G-AC---------A-AACAAAAATTGAAAAGACCTCAG--CGACCTGAGGC
* * * **
34902274 TCAACTCACCTCTCTCAATATGAGTTGATTTTTTTTTTGAAAAACAGAAA-T-CAAAAGGCTTAA
430 TCAACTCACCTCTCGCAATATGAGTTGA-TTTCTTTTTG--AAACAGAAATTAAAAAAGG-AAAA
*
34902337 TTGAAAATACCTCGGCGTGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAA
491 TTGAAAATACCTCAGC--GTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGAAATTAAA
*
34902402 ACACAAAAATTGAAAATACCTCAGCGTGCCCTGAGGCTCAACTCACCTCTTGCAATATGAGCTGA
554 ACACAAAAATTGAAAATACCTCAGCGTGCCCCGAGGCTCAACTCACCTCTTGCAATATGAGCTGA
*
34902467 TTTTGGAAAAGTAGAAATTAAAAGGT
619 TTTTGAAAAAGTAGAAATTAAAAGGT
*
34902493 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACCCACCTCTCGCAATATGAATTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
* *
34902558 CCCGAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCT
66 CCCGAGGCTCAACTCACCTCTCGCAATATGA---GA--TTTG----A-AGAAA-T-AAATTACCA
* * *
34902623 CAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA--TTTTTGACAAACAGAAATT
119 CAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATT
34902686 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGA-----TTTTGA
184 GAAATTACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTTG-
* *
34902746 AAAACAAAAATT-AAAAGTACCTCAACGTGTCTTGAGGCTCAACCCATCTCTCGCAATATGAGTT
248 AAAACAGAAATTGAAAA-TACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTT
34902810 G-ATTTT
312 GAATTTT
34902816 CCTTGAAAAG
Statistics
Matches: 862, Mismatches: 71, Indels: 114
0.82 0.07 0.11
Matches are distributed among these distances:
643 61 0.07
644 31 0.04
645 2 0.00
646 25 0.03
647 7 0.01
648 5 0.01
650 1 0.00
651 2 0.00
652 11 0.01
653 3 0.00
654 34 0.04
655 35 0.04
656 3 0.00
657 36 0.04
658 2 0.00
660 1 0.00
661 19 0.02
662 2 0.00
663 40 0.05
664 26 0.03
665 1 0.00
666 235 0.27
668 1 0.00
670 1 0.00
672 76 0.09
673 60 0.07
674 25 0.03
676 2 0.00
677 31 0.04
679 34 0.04
680 3 0.00
682 33 0.04
683 3 0.00
684 11 0.01
ACGTcount: A:0.34, C:0.21, G:0.16, T:0.29
Consensus pattern (644 bp):
TCAACCCACCTCTCGCAATATGAATTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
CCCGAGGCTCAACTCACCTCTCGCAATATGAGATTTGAAGAAATAAATTACCACAGCGTGTCCTG
AGGCTCAACTCACCTCTCGCAATATGAGTTGATTTTTTTTAAAAACAGAAATTGAAATTACCTCA
GCGTGTCCTGAGGCTCAACTCACCTCTAGCAATATGAGTTGATTTTTTTTTGAAAACAGAAATTG
AAAATACCTCAACGTGTCTTGAGGCTCAACTCATCTCTCGCAATATGAGTTGAATTTTGATAAAC
AGAAATTAAAACCACCTCAGCGTGTCCTGAGGCTCAACTCACCTCTCGCAATATGAGTTGATTTT
TGACAAACAAAAATTGAAAAGACCTCAGCGACCTGAGGCTCAACTCACCTCTCGCAATATGAGTT
GATTTCTTTTTGAAACAGAAATTAAAAAAGGAAAATTGAAAATACCTCAGCGTGTCCTGAGGCTC
AACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCCCC
GAGGCTCAACTCACCTCTTGCAATATGAGCTGATTTTGAAAAAGTAGAAATTAAAAGGT
Found at i:34902571 original size:127 final size:126
Alignment explanation
Indices: 34902367--34902597 Score: 333
Period size: 127 Copynumber: 1.8 Consensus size: 126
34902357 GTCCTGAGGC
*
34902367 TCAACTCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
1 TCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
34902432 CTGAGGCTCAACTCACCTCTT-GCAATATGAGCTGATTTTGGAAAAGTAGAAATTAAAAGGT
66 CTGAGGCTCAACTCACCT-TTCGCAATATGAGCTGATTTTGGAAAAGTAGAAATTAAAAGGT
** * * * *
34902493 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAA-ACAGAAATTGAAATTACCTCATCGTG
1 TCAACCCACCTCTCGCAATATGAGTTGA-AATT-AAAACACAAAAATTGAAAATACCTCAGCGTG
*
34902557 TCCC-GAGGCTCAACTCACCTTTCGCAATATGAGTTGATTTT
64 -CCCTGAGGCTCAACTCACCTTTCGCAATATGAGCTGATTTT
34902598 TGACAAACAG
Statistics
Matches: 93, Mismatches: 8, Indels: 7
0.86 0.07 0.06
Matches are distributed among these distances:
126 29 0.31
127 58 0.62
128 6 0.06
ACGTcount: A:0.33, C:0.23, G:0.16, T:0.28
Consensus pattern (126 bp):
TCAACCCACCTCTCGCAATATGAGTTGAAATTAAAACACAAAAATTGAAAATACCTCAGCGTGCC
CTGAGGCTCAACTCACCTTTCGCAATATGAGCTGATTTTGGAAAAGTAGAAATTAAAAGGT
Found at i:34902587 original size:73 final size:73
Alignment explanation
Indices: 34902493--34902815 Score: 504
Period size: 73 Copynumber: 4.4 Consensus size: 73
34902483 ATTAAAAGGT
* * *
34902493 TCAACCCACCTCTCGCAATATGAGTTGATTCTTGACAAACAGAAATTGAAATTACCTCATCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
*
34902558 CCCGAGGC
66 CCTGAGGC
*
34902566 TCAACTCACCTTTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
34902631 CCTGAGGC
66 CCTGAGGC
*
34902639 TCAACTCACCTCTAGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
34902704 CCTGAGGC
66 CCTGAGGC
* * * * * *
34902712 TCAACTCACCTCTAGCAATATGAGTTGA-TTTTGAAAAACAAAAATTAAAAGTACCTCAACGTGT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
*
34902776 CTTGAGGC
66 CCTGAGGC
* *
34902784 TCAACCCATCTCTCGCAATATGAGTTGATTTT
1 TCAACTCACCTCTCGCAATATGAGTTGATTTT
34902816 CCTTGAAAAG
Statistics
Matches: 233, Mismatches: 16, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
72 63 0.27
73 170 0.73
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29
Consensus pattern (73 bp):
TCAACTCACCTCTCGCAATATGAGTTGATTTTTGACAAACAGAAATTGAAATTACCTCAGCGTGT
CCTGAGGC
Found at i:34917628 original size:71 final size:69
Alignment explanation
Indices: 34917526--34917700 Score: 190
Period size: 71 Copynumber: 2.5 Consensus size: 69
34917516 TTTTCAAGGG
* * * *
34917526 AAATCAACTCATATTGCGAG-AGATAATTTGAGCCTCAAGACACGTTGAGGTATTTTAAATTTTT
1 AAATCAACTCATATTGCGAGAAG-TGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAAATTTAT
34917590 GTTTT
65 GTTTT
*** * * *
34917595 CAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGGGCACGCTGAGGTATTTTTAGTTTA
1 --AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAAATTTA
34917660 TGTTTT
64 TGTTTT
** * *
34917666 AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
34917701 TTTAATTTTT
Statistics
Matches: 89, Mismatches: 14, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
69 31 0.35
71 56 0.63
72 2 0.02
ACGTcount: A:0.29, C:0.14, G:0.22, T:0.35
Consensus pattern (69 bp):
AAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCAAGACACGCTGAGGTATTTTAAATTTATG
TTTT
Found at i:34917821 original size:72 final size:71
Alignment explanation
Indices: 34917700--34917865 Score: 217
Period size: 72 Copynumber: 2.3 Consensus size: 71
34917690 GAGTTAAGCC
** * ** **
34917700 TTTT-AATTTTTGTTTTTCAAAATCAACTCATATTGCTAGAGGTGAGTTGAGCCTCGGGGCACGC
1 TTTTCAATTTTTGTTTTT-AATTTCAACTCATATTGCGAGAACTGAGTTGAGCCTCAAGGCACGC
34917764 TGAGGTA
65 TGAGGTA
*
34917771 TTTTCAATTTTTGTGTTTTAATTTCAACTCATATTGCGAGAACTGAGTTGAGCCTCAAGTCACGC
1 TTTTCAATTTTTGT-TTTTAATTTCAACTCATATTGCGAGAACTGAGTTGAGCCTCAAGGCACGC
34917836 TGAGGTA
65 TGAGGTA
* *
34917843 TTTTCAATTTCTGTTTTCAATTT
1 TTTTCAATTTTTGTTTTTAATTT
34917866 ACGTTGTTCA
Statistics
Matches: 83, Mismatches: 10, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
71 12 0.14
72 67 0.81
73 4 0.05
ACGTcount: A:0.23, C:0.16, G:0.19, T:0.42
Consensus pattern (71 bp):
TTTTCAATTTTTGTTTTTAATTTCAACTCATATTGCGAGAACTGAGTTGAGCCTCAAGGCACGCT
GAGGTA
Found at i:34917973 original size:140 final size:140
Alignment explanation
Indices: 34917798--34919122 Score: 2343
Period size: 140 Copynumber: 9.5 Consensus size: 140
34917788 TTAATTTCAA
** *
34917798 CTCATATTGCGAGAACTGAGTTGAGCCTCAAGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
34917863 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34917928 TCAAAATCAG
131 TCAAAATCAG
*
34917938 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCATTTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* * *
34918003 TTTACGTTGTTCAAGAATCAACTCATATTGAGAGAGGTGGGTTGAACCTTTTAATTTCTACATTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34918068 TCAAAATCAG
131 TCAAAATCAG
34918078 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
34918143 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTG-GTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34918207 TCAAAATCAG
131 TCAAAATCAG
*
34918217 CTCATATTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
*
34918282 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTG-GTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34918346 TCAAAATCAG
131 TCAAAATCAG
* *
34918356 CTCATGTTGTGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* * *
34918421 TTTACGTTATTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACATTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
*
34918486 TCAAAATTAG
131 TCAAAATCAG
*
34918496 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCATTTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
34918561 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34918626 TCAAAATCAG
131 TCAAAATCAG
*
34918636 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCATTTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
34918701 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34918766 TCAAAATCAG
131 TCAAAATCAG
*
34918776 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCATTTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
34918841 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34918906 TCAAAATCAG
131 TCAAAATCAG
*
34918916 CTCATATTGCGAGAGGTGAGTTGAGCCTCAAGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
* * * * *
34918981 TTTATGTTGTTCAAGAATCAACTCATGTTGCGAGAGGTGGGTTGAA-TTTTTAATTTCTATTTTT
66 TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
34919045 TCAAAATCAG
131 TCAAAATCAG
* *
34919055 TTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCACATGTTGAGGTATTTTCAATTTCTGTCTT
1 CTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCAC--GCTGAGGTATTTTCAATTTCTGT-TT
34919119 TCAA
62 TCAA
34919123 AAAAAAAATT
Statistics
Matches: 1146, Mismatches: 34, Indels: 8
0.96 0.03 0.01
Matches are distributed among these distances:
138 1 0.00
139 331 0.29
140 786 0.69
141 22 0.02
142 6 0.01
ACGTcount: A:0.25, C:0.17, G:0.20, T:0.38
Consensus pattern (140 bp):
CTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTTTCAA
TTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGAGTTGAACCTTTTAATTTCTACTTTT
TCAAAATCAG
Found at i:34918979 original size:13 final size:13
Alignment explanation
Indices: 34918961--34918994 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
34918951 CGCTGAGGTA
*
34918961 TTTTCAATTTCTG
1 TTTTCAATTTATG
34918974 TTTTCAATTTATG
1 TTTTCAATTTATG
34918987 TTGTTCAA
1 TT-TTCAA
34918995 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:34919251 original size:71 final size:71
Alignment explanation
Indices: 34919026--34919303 Score: 254
Period size: 71 Copynumber: 3.8 Consensus size: 71
34919016 GGTGGGTTGA
* ** * *
34919026 ATTTTTAATTTCTATTTTTTCAAAATCAGTTCATATTGCGAGAGGTGAGTTGAGCCTCGGTTCAC
1 ATTTTTAATTT-T-TGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGG--GAC
*
34919091 ATGTTGAGGT
62 ACGTTGAGGT
* * * *
34919101 ATTTTCAATTTCTGTCTTTCAAAAAAAAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCA
1 ATTTTTAATTTTTGT-TTTC------AAAA-TCAACTCATATTGCGAGAAGTGAGTTGAGCCTCG
* *
34919166 AGACACGTTAAGGT
58 GGACACGTTGAGGT
* *
34919180 ATTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGGCACGC
1 ATTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGT
34919245 TGAGGT
66 TGAGGT
* * ** * *
34919251 ATTTTTAGTTTATGTTTT--AAATTGACTCATATTGCGAGAGGTGAGTTAAGCCT
1 ATTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCT
34919304 TTTAATTTTT
Statistics
Matches: 169, Mismatches: 26, Indels: 22
0.78 0.12 0.10
Matches are distributed among these distances:
69 31 0.18
71 58 0.34
72 4 0.02
73 2 0.01
74 4 0.02
75 10 0.06
78 4 0.02
79 23 0.14
80 4 0.02
81 29 0.17
ACGTcount: A:0.28, C:0.14, G:0.20, T:0.37
Consensus pattern (71 bp):
ATTTTTAATTTTTGTTTTCAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTCGGGACACGT
TGAGGT
Found at i:34919487 original size:47 final size:47
Alignment explanation
Indices: 34919418--34919508 Score: 164
Period size: 47 Copynumber: 1.9 Consensus size: 47
34919408 GCGAGAACTG
*
34919418 AGTTGAGCCTCAAGTCACGCTGAGGTATTTTCAATTTCTGTTTTATT
1 AGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTATT
*
34919465 AGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTT
1 AGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTT
34919509 TCAAAAAAAA
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
47 42 1.00
ACGTcount: A:0.22, C:0.16, G:0.20, T:0.42
Consensus pattern (47 bp):
AGTTGAGCCTCAAGACACGCTGAGGTATTTTCAATTTCTGTTTTATT
Found at i:34919601 original size:75 final size:75
Alignment explanation
Indices: 34919520--34919746 Score: 296
Period size: 75 Copynumber: 3.0 Consensus size: 75
34919510 CAAAAAAAAT
* ** * * *
34919520 AAAAAATCAATTCATATTGTGAGAAATGAGTTGAGCCTCAAGATATGCTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
34919585 CTGTTTTTCA
66 CTGTTTTTCA
* *
34919595 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
*
34919660 CTG-TTGTCA
66 CTGTTTTTCA
* * * *
34919669 AAAAAATTAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAT
34919734 TT-TCGTTTTTCA
64 TTCT-GTTTTTCA
34919746 A
1 A
34919747 TTTCTGCCTT
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
74 43 0.33
75 61 0.46
76 22 0.17
77 6 0.05
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (75 bp):
AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
CTGTTTTTCA
Found at i:34919796 original size:167 final size:167
Alignment explanation
Indices: 34919575--34919887 Score: 434
Period size: 171 Copynumber: 1.9 Consensus size: 167
34919565 TGCTGAGGTA
**
34919575 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCAC
* * * *
34919639 ACGCTGAGGTAATTTCAATTTCTGT-TGTC-AAAAAAATTAACTCGTATTGTGAGAGGCGAGTTG
65 ACGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTG
*
34919702 AGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
130 AGCCTCAGATCACACGCCGAGGTATTTTCAATTTTCGT
* *
34919740 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--
* * * *
34919805 CACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAG
62 CACACGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAG
*
34919870 TTGAGCTTCAGATCACAC
127 TTGAGCCTCAGATCACAC
34919888 ACTGAGATAT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
165 17 0.13
166 2 0.02
167 38 0.30
169 24 0.19
170 3 0.02
171 43 0.34
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (167 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACA
CGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGA
GCCTCAGATCACACGCCGAGGTATTTTCAATTTTCGT
Found at i:34919838 original size:93 final size:93
Alignment explanation
Indices: 34919668--34919839 Score: 222
Period size: 93 Copynumber: 1.8 Consensus size: 93
34919658 TTCTGTTGTC
* * * *
34919668 AAAAAAATTAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
34919733 TTTTCGTTTTTCAATTTCTGCCTTTCAA
66 TTTTCGTCTTTCAATTTCTGCCTTTCAA
* * * * *
34919761 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
34919825 A-TTTCTGTCTTTCAA
65 ATTTTC-GTCTTTCAA
34919840 AAAAAATCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 6 0.09
93 61 0.91
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTTCGTCTTTCAATTTCTGCCTTTCAA
Found at i:34919870 original size:78 final size:78
Alignment explanation
Indices: 34919740--34920124 Score: 335
Period size: 79 Copynumber: 4.7 Consensus size: 78
34919730 CAATTTTCGT
** *
34919740 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGTTTTTC-AAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCT
* *
34919805 CACGCGCTGAGCTA
65 CACACGCTGAGATA
* * *
34919819 TTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAG-CTTCAGAT
1 TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTT-GGCT
*
34919883 CACACACTGAGATA
65 CACACGCTGAGATA
* * * * * * *
34919897 TTTTTTTAATTTATATTTTTC-AAAAAAATCAACTCACATTGCGAGATGTGAGTTGAGCCTCGGG
1 --TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGC
* *
34919961 TCACATG-TCGAGGTA
64 TCACACGCT-GAGATA
*** * *
34919976 TTTTCAAAACCTGTTTTTCAGATTCTGTTTTCAAAAATCAACTCATATTGCGAGAAGTGAGTTGA
1 TTTTCAATTTCTGTTTTTCA-A---------AAAAAATCAACTCATATTGCGAGAGGTGAGTTGA
** *
34920041 GCCTTGGCTCACGTGCTGAGTTA
56 GCCTTGGCTCACACGCTGAGATA
*
34920064 TTTTCAATTTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGC
1 TTTTCAATTTCTG----TTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC
34920125 TTTTTAATTT
Statistics
Matches: 247, Mismatches: 38, Indels: 39
0.76 0.12 0.12
Matches are distributed among these distances:
77 16 0.06
78 50 0.20
79 64 0.26
80 17 0.07
82 33 0.13
88 58 0.23
89 1 0.00
91 1 0.00
92 7 0.03
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36
Consensus pattern (78 bp):
TTTTCAATTTCTGTTTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTC
ACACGCTGAGATA
Found at i:34920149 original size:30 final size:30
Alignment explanation
Indices: 34920108--34920167 Score: 95
Period size: 30 Copynumber: 2.0 Consensus size: 30
34920098 ACTCATATTG
34920108 CGAGAGGTGAGTTGAG-CTTTTTAATTTCTA
1 CGAGAGGTGAGTTGAGTC-TTTTAATTTCTA
*
34920138 CGAGAGTTGAGTTGAGTCTTTTAATTTCTA
1 CGAGAGGTGAGTTGAGTCTTTTAATTTCTA
34920168 TTTTTCAAAC
Statistics
Matches: 28, Mismatches: 1, Indels: 2
0.90 0.03 0.06
Matches are distributed among these distances:
30 27 0.96
31 1 0.04
ACGTcount: A:0.23, C:0.10, G:0.25, T:0.42
Consensus pattern (30 bp):
CGAGAGGTGAGTTGAGTCTTTTAATTTCTA
Found at i:34920268 original size:254 final size:249
Alignment explanation
Indices: 34919762--34920335 Score: 754
Period size: 254 Copynumber: 2.3 Consensus size: 249
34919752 GCCTTTCAAA
* *
34919762 AAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGCGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
34919827 TTCTG----TCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
66 TTCTGTTTTTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
* * *
34919888 ACTGAGATATTTTTTTAATTTATATTTTTCAAAAAAATCAACTCACATTGCGAGATGTGAGTTGA
131 ACTGAGATAGTCTTTTAATTTATATTTTTC-AAAAAATCAACTCACATTGCGAGAGGTGAGTTGA
* * * * **
34919953 GCCTCGGGTCACATGTCGAGGTATTTTCAAAACCTGTTTTTCAGATTCTGTTTTC
195 ACCTCGAGTCACATATCGAGGTATTTTCAAAACCTGCTTTTCAGATTAAGTTTTC
* *
34920008 -AAAAATCAACTCATATTGCGAGAAGTGAGTTGAGCCTTGGCTCACGTGCTGAGTTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
* * *
34920072 TTCTGTTTTTTTTTCAAAAAAATTCAACTCATATTGCGAGAGGTGAGTTGAGCTTTTTA-ATTTC
66 TTCTGTTTTTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGC--TTCAGA--TC
* * * * * * *
34920136 TACGAGAGTTGAGTTGAGTCTTTTAATTTCTATTTTTC-AAACATCAACTCATATTGTGAGAGGT
127 -AC-ACA-CTGAGAT-AGTCTTTTAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGT
*
34920200 GAGTTGAACCTTC-AGTCACATATCGAGGTATTTTCAAAATCTGCTTTTCA-AGTTAAG-TTTC
188 GAGTTGAACC-TCGAGTCACATATCGAGGTATTTTCAAAACCTGCTTTTCAGA-TTAAGTTTTC
*
34920261 AAAAAATCAACTCTTATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
1 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
34920326 TTCTGTTTTT
66 TTCTGTTTTT
34920336 AATGTCTGTT
Statistics
Matches: 286, Mismatches: 27, Indels: 22
0.85 0.08 0.07
Matches are distributed among these distances:
245 65 0.23
249 42 0.15
250 1 0.00
251 3 0.01
252 2 0.01
253 7 0.02
254 140 0.49
255 7 0.02
256 19 0.07
ACGTcount: A:0.28, C:0.16, G:0.19, T:0.37
Consensus pattern (249 bp):
AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTTGGCTCACGTGCTGAGCTATTTTCAAT
TTCTGTTTTTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCTTCAGATCACAC
ACTGAGATAGTCTTTTAATTTATATTTTTCAAAAAATCAACTCACATTGCGAGAGGTGAGTTGAA
CCTCGAGTCACATATCGAGGTATTTTCAAAACCTGCTTTTCAGATTAAGTTTTC
Found at i:34924931 original size:140 final size:140
Alignment explanation
Indices: 34924679--34925170 Score: 880
Period size: 140 Copynumber: 3.5 Consensus size: 140
34924669 NNNNNNNNNN
*
34924679 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTT
34924744 TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC
66 TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC
34924809 TTTTTCAAAA
131 TTTTTCAAAA
34924819 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTT
1 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTT
*
34924884 TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAAGTGGGTTGAACCTTTTAATTTCTAC
66 TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC
34924949 TTTTTCAAAA
131 TTTTTCAAAA
*
34924959 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTGAGGTATTTTCAATTTCTGTTT
1 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTT
*
34925024 TCAATTTATGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC
66 TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC
34925089 TTTTTCAAAA
131 TTTTTCAAAA
*
34925099 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTC-GGTTCAC-ATAATGAGGTATTTTCAATTTCT
1 TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-TCACGCT-A--AGGTATTTTCAATTTCT
34925162 GTCTTTCAA
62 GT-TTTCAA
34925171 AAAAAAATTC
Statistics
Matches: 340, Mismatches: 7, Indels: 7
0.96 0.02 0.02
Matches are distributed among these distances:
139 3 0.01
140 312 0.92
142 19 0.06
143 6 0.02
ACGTcount: A:0.25, C:0.17, G:0.21, T:0.37
Consensus pattern (140 bp):
TCAGCTCATATTGCGAGAGGTGAGTTGAGCCTCAGGTCACGCTAAGGTATTTTCAATTTCTGTTT
TCAATTTACGTTGTTCAAGAATCAACTCATATTGCGAGAGGTGGGTTGAACCTTTTAATTTCTAC
TTTTTCAAAA
Found at i:34925026 original size:13 final size:13
Alignment explanation
Indices: 34925008--34925041 Score: 50
Period size: 13 Copynumber: 2.5 Consensus size: 13
34924998 CGCTGAGGTA
*
34925008 TTTTCAATTTCTG
1 TTTTCAATTTATG
34925021 TTTTCAATTTATG
1 TTTTCAATTTATG
34925034 TTGTTCAA
1 TT-TTCAA
34925042 GAATCAACTC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
13 14 0.74
14 5 0.26
ACGTcount: A:0.21, C:0.12, G:0.09, T:0.59
Consensus pattern (13 bp):
TTTTCAATTTATG
Found at i:34925253 original size:49 final size:49
Alignment explanation
Indices: 34925196--34925291 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
34925186 ATATTGTGAG
*
34925196 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
34925245 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
34925292 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:34925363 original size:121 final size:121
Alignment explanation
Indices: 34925174--34925484 Score: 577
Period size: 121 Copynumber: 2.6 Consensus size: 121
34925164 CTTTCAAAAA
*
34925174 AAAATTCAACTCATATTGTGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
34925239 TGTTCAAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC
66 TGTTCAAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC
34925295 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
34925360 TGTTCAAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC
66 TGTTCAAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC
* * * *
34925416 AAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
34925481 TGTT
66 TGTT
34925485 TTTCAAAAAA
Statistics
Matches: 185, Mismatches: 5, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
121 185 1.00
ACGTcount: A:0.32, C:0.17, G:0.19, T:0.33
Consensus pattern (121 bp):
AAAATTCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTC
TGTTCAAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTC
Found at i:34925374 original size:49 final size:49
Alignment explanation
Indices: 34925317--34925412 Score: 183
Period size: 49 Copynumber: 2.0 Consensus size: 49
34925307 ATATTGCGAG
*
34925317 AAATGAGTTGAGCCTCAAGACACGTTGAGGTAATTTCAATTTCTGTTCA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
34925366 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTT
34925413 TTCAAAATTC
Statistics
Matches: 46, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
49 46 1.00
ACGTcount: A:0.30, C:0.17, G:0.21, T:0.32
Consensus pattern (49 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTCA
Found at i:34925565 original size:83 final size:82
Alignment explanation
Indices: 34925416--34925652 Score: 310
Period size: 83 Copynumber: 3.0 Consensus size: 82
34925406 TTCTGTTTTC
* *
34925416 AAAATTCAACTCATATTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
34925481 TGTTTTTCAAAAAAAATA
66 TGTTTTTCAAAAAAAA-A
* * *
34925499 AAAAATCAATTCATATTGTGAGAAATGAGTTGAGCCTCAAGATATGCTGAGGTATTTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
34925564 TGTTTTTC-------AA
66 TGTTTTTCAAAAAAAAA
** * * *
34925574 AAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTC
1 AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
*
34925639 TG-TTGTCAAAAAAA
66 TGTTTTTCAAAAAAA
34925653 TTAACTCGTA
Statistics
Matches: 133, Mismatches: 14, Indels: 16
0.82 0.09 0.10
Matches are distributed among these distances:
74 4 0.03
75 60 0.45
76 1 0.01
83 68 0.51
ACGTcount: A:0.35, C:0.14, G:0.18, T:0.32
Consensus pattern (82 bp):
AAAAATCAACTCATATTGCGAGAAATGAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTC
TGTTTTTCAAAAAAAAA
Found at i:34925623 original size:75 final size:75
Alignment explanation
Indices: 34925498--34925724 Score: 296
Period size: 75 Copynumber: 3.0 Consensus size: 75
34925488 CAAAAAAAAT
* ** * * *
34925498 AAAAAATCAATTCATATTGTGAGAAATGAGTTGAGCCTCAAGATATGCTGAGGTATTTTCAATTT
1 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
34925563 CTGTTTTTCA
66 CTGTTTTTCA
* *
34925573 AAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTT
1 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
*
34925638 CTG-TTGTCA
66 CTGTTTTTCA
* * * *
34925647 AAAAAATTAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAAT
1 AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGG--ACACGCTGAGGTATTTTCAAT
34925712 TT-TCGTTTTTCA
64 TTCT-GTTTTTCA
34925724 A
1 A
34925725 TTTCTGCCTT
Statistics
Matches: 132, Mismatches: 16, Indels: 6
0.86 0.10 0.04
Matches are distributed among these distances:
74 43 0.33
75 61 0.46
76 22 0.17
77 6 0.05
ACGTcount: A:0.31, C:0.16, G:0.21, T:0.33
Consensus pattern (75 bp):
AAAAAATCAACTCATATTGTGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTATTTTCAATTT
CTGTTTTTCA
Found at i:34925651 original size:158 final size:155
Alignment explanation
Indices: 34925366--34925652 Score: 441
Period size: 158 Copynumber: 1.8 Consensus size: 155
34925356 TTTCTGTTCA
*
34925366 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAATTCAACTCATA
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
* * * *
34925431 TTGCGAGAAATTAGTTGAGCCTCAAGACATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAA
66 TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAAA
34925496 ATAAAAAATCAATTCATATTGTGAG
131 ATAAAAAATCAATTCATATTGTGAG
* * *
34925521 AAATGAGTTGAGCCTCAAGATATGCTGAGGTATTTTCAATTTCTGTTTTTCAAAAAAATCAACTC
1 AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTG-TTTTC--AAAAATCAACTC
** *
34925586 ATATTGCGAGAGGTGAGTTGAGCCTCAGGACACGCTGAGGTAATTTCAATTTCTG-TTGTCAAAA
63 ATATTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAA
34925650 AAA
128 AAA
34925653 TTAACTCGTA
Statistics
Matches: 118, Mismatches: 11, Indels: 4
0.89 0.08 0.03
Matches are distributed among these distances:
155 42 0.36
156 5 0.04
157 11 0.09
158 60 0.51
ACGTcount: A:0.34, C:0.15, G:0.18, T:0.33
Consensus pattern (155 bp):
AAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTTCAAAAATCAACTCATA
TTGCGAGAAATGAGTTGAGCCTCAAGACACGCTGAGGTAATTTCAATTTCTGTTTGTCAAAAAAA
ATAAAAAATCAATTCATATTGTGAG
Found at i:34925774 original size:167 final size:167
Alignment explanation
Indices: 34925553--34925865 Score: 434
Period size: 171 Copynumber: 1.9 Consensus size: 167
34925543 TGCTGAGGTA
**
34925553 TTTTCAATTTCTGTTTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTCAGG-AC
1 TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCT-AGGCAC
* * * *
34925617 ACGCTGAGGTAATTTCAATTTCTGT-TGTC-AAAAAAATTAACTCGTATTGTGAGAGGCGAGTTG
65 ACGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTG
*
34925680 AGCCTCAGGTCACACGCCGAGGTATTTTCAATTTTCGT
130 AGCCTCAGATCACACGCCGAGGTATTTTCAATTTTCGT
* *
34925718 TTTTCAATTTCTGCCTTTCAAAAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCTTGGCT
1 TTTTCAATTTCTGCCTTTC--AAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGG--
* * * *
34925783 CACGCGCTGAGCTATTTTCAATTTCTGTCTTTCAAAAAAAATCAACTCATATTGCGAGAGGTGAG
62 CACACGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAG
*
34925848 TTGAGCTTCAGATCACAC
127 TTGAGCCTCAGATCACAC
34925866 ACTGAGATAT
Statistics
Matches: 127, Mismatches: 14, Indels: 8
0.85 0.09 0.05
Matches are distributed among these distances:
165 17 0.13
166 2 0.02
167 38 0.30
169 24 0.19
170 3 0.02
171 43 0.34
ACGTcount: A:0.29, C:0.19, G:0.20, T:0.33
Consensus pattern (167 bp):
TTTTCAATTTCTGCCTTTCAAAAAAATCAACTCATATTGCGAGAGGTGAGTTGAGCCTAGGCACA
CGCTGAGCTAATTTCAATTTCTGTCTGTCAAAAAAAATCAACTCATATTGCGAGAGGCGAGTTGA
GCCTCAGATCACACGCCGAGGTATTTTCAATTTTCGT
Found at i:34925816 original size:93 final size:93
Alignment explanation
Indices: 34925646--34925817 Score: 222
Period size: 93 Copynumber: 1.8 Consensus size: 93
34925636 TTCTGTTGTC
* * * *
34925646 AAAAAAATTAACTCGTATTGTGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGGTATTTTCAA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
*
34925711 TTTTCGTTTTTCAATTTCTGCCTTTCAA
66 TTTTCGTCTTTCAATTTCTGCCTTTCAA
* * * * *
34925739 AAAAAAATCAACTTATATTGCGAGAGGTGAGTTGAGCCT-TGGCTCACGCGCTGAGCTATTTTCA
1 AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGG-TCACACGCCGAGCTATTTTCA
34925803 A-TTTCTGTCTTTCAA
65 ATTTTC-GTCTTTCAA
34925818 AAAAAATCAA
Statistics
Matches: 67, Mismatches: 10, Indels: 4
0.83 0.12 0.05
Matches are distributed among these distances:
92 6 0.09
93 61 0.91
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (93 bp):
AAAAAAATCAACTCATATTGCGAGAGGCGAGTTGAGCCTCAGGTCACACGCCGAGCTATTTTCAA
TTTTCGTCTTTCAATTTCTGCCTTTCAA
Done.