Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Dt_chr1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96304692
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.32
Warning! 2448173 characters in sequence are not A, C, G, or T
File 111 of 313
Found at i:36258932 original size:16 final size:14
Alignment explanation
Indices: 36258886--36258953 Score: 55
Period size: 14 Copynumber: 4.4 Consensus size: 14
36258876 AATTAAAAAA
*
36258886 TAAAAAATATTTGT
1 TAAAAAATATTTAT
36258900 TAAAAAATATTTTTTTAT
1 TAAAAAATA----TTTAT
36258918 TAAAAAATGAATTTAT
1 TAAAAAAT--ATTTAT
* *
36258934 TTAAAAATATATAT
1 TAAAAAATATTTAT
36258948 TAAAAA
1 TAAAAA
36258954 GTAAAAATTT
Statistics
Matches: 44, Mismatches: 4, Indels: 12
0.73 0.07 0.20
Matches are distributed among these distances:
14 19 0.43
16 12 0.27
18 12 0.27
20 1 0.02
ACGTcount: A:0.54, C:0.00, G:0.03, T:0.43
Consensus pattern (14 bp):
TAAAAAATATTTAT
Found at i:36258960 original size:20 final size:20
Alignment explanation
Indices: 36258935--36258989 Score: 83
Period size: 20 Copynumber: 2.8 Consensus size: 20
36258925 TGAATTTATT
36258935 TAAAAATATATATTAAAAAG
1 TAAAAATATATATTAAAAAG
* * *
36258955 TAAAAATTTAAATTAAAAAT
1 TAAAAATATATATTAAAAAG
36258975 TAAAAATATATATTA
1 TAAAAATATATATTA
36258990 TAATTGGTCA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.64, C:0.00, G:0.02, T:0.35
Consensus pattern (20 bp):
TAAAAATATATATTAAAAAG
Found at i:36258989 original size:13 final size:13
Alignment explanation
Indices: 36258934--36258982 Score: 53
Period size: 13 Copynumber: 3.7 Consensus size: 13
36258924 ATGAATTTAT
* *
36258934 TTAAAAATATATA
1 TTAAAAATAAAAA
36258947 TTAAAAAGTAAAAA
1 TTAAAAA-TAAAAA
* *
36258961 TTTAAATTAAAAA
1 TTAAAAATAAAAA
36258974 TTAAAAATA
1 TTAAAAATA
36258983 TATATTATAA
Statistics
Matches: 29, Mismatches: 6, Indels: 2
0.78 0.16 0.05
Matches are distributed among these distances:
13 20 0.69
14 9 0.31
ACGTcount: A:0.65, C:0.00, G:0.02, T:0.33
Consensus pattern (13 bp):
TTAAAAATAAAAA
Found at i:36259635 original size:18 final size:19
Alignment explanation
Indices: 36259599--36259638 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
36259589 GTATAACCAA
**
36259599 TTTTAAAATTTTAATATAT
1 TTTTAAAAAATTAATATAT
36259618 TTTTAAAAAATTAAATATAT
1 TTTTAAAAAATT-AATATAT
36259638 T
1 T
36259639 AAAAAAAGTT
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
19 10 0.56
20 8 0.44
ACGTcount: A:0.47, C:0.00, G:0.00, T:0.53
Consensus pattern (19 bp):
TTTTAAAAAATTAATATAT
Found at i:36259636 original size:62 final size:62
Alignment explanation
Indices: 36259560--36259678 Score: 220
Period size: 62 Copynumber: 1.9 Consensus size: 62
36259550 AAAAAACTTA
*
36259560 AAAAAATTAAATATATTAAAAAACGTTAAGTATAACCAATTTTAAAATTTTAATATATTTTT
1 AAAAAATTAAATATATTAAAAAAAGTTAAGTATAACCAATTTTAAAATTTTAATATATTTTT
*
36259622 AAAAAATTAAATATATTAAAAAAAGTTAAGTATAATCAATTTTAAAATTTTAATATA
1 AAAAAATTAAATATATTAAAAAAAGTTAAGTATAACCAATTTTAAAATTTTAATATA
36259679 CTCAATATAT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
62 55 1.00
ACGTcount: A:0.55, C:0.03, G:0.03, T:0.39
Consensus pattern (62 bp):
AAAAAATTAAATATATTAAAAAAAGTTAAGTATAACCAATTTTAAAATTTTAATATATTTTT
Found at i:36259780 original size:17 final size:17
Alignment explanation
Indices: 36259757--36259827 Score: 63
Period size: 17 Copynumber: 4.1 Consensus size: 17
36259747 GAAAAAAGAT
*
36259757 TTTTTAATATATTTAAAA
1 TTTTAAATATA-TTAAAA
*
36259775 TTTTAAA-AAACTTAAAAA
1 TTTTAAATATA-TT-AAAA
**
36259793 AATTAAATATATTAAAA
1 TTTTAAATATATTAAAA
*
36259810 TTTTAAATATGTTAAAA
1 TTTTAAATATATTAAAA
36259827 T
1 T
36259828 AAAATGTTGA
Statistics
Matches: 42, Mismatches: 9, Indels: 5
0.75 0.16 0.09
Matches are distributed among these distances:
17 23 0.55
18 17 0.40
19 2 0.05
ACGTcount: A:0.54, C:0.01, G:0.01, T:0.44
Consensus pattern (17 bp):
TTTTAAATATATTAAAA
Found at i:36259874 original size:18 final size:19
Alignment explanation
Indices: 36259841--36259879 Score: 71
Period size: 18 Copynumber: 2.1 Consensus size: 19
36259831 ATGTTGAGTA
36259841 TAAAATATACTTAATATAT
1 TAAAATATACTTAATATAT
36259860 TAAAATATA-TTAATATAT
1 TAAAATATACTTAATATAT
36259878 TA
1 TA
36259880 TTACTTATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
18 11 0.55
19 9 0.45
ACGTcount: A:0.54, C:0.03, G:0.00, T:0.44
Consensus pattern (19 bp):
TAAAATATACTTAATATAT
Found at i:36261804 original size:30 final size:30
Alignment explanation
Indices: 36261768--36261854 Score: 156
Period size: 30 Copynumber: 2.9 Consensus size: 30
36261758 CGCAGAGCAG
*
36261768 TTCATATCACTCGGACATTGGCGGTTCAAA
1 TTCATATCACTCGGACATAGGCGGTTCAAA
*
36261798 TTCATATCACTCGGACATAGGCGGTTCAAG
1 TTCATATCACTCGGACATAGGCGGTTCAAA
36261828 TTCATATCACTCGGACATAGGCGGTTC
1 TTCATATCACTCGGACATAGGCGGTTC
36261855 GAGTTTATTT
Statistics
Matches: 55, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 55 1.00
ACGTcount: A:0.25, C:0.24, G:0.22, T:0.29
Consensus pattern (30 bp):
TTCATATCACTCGGACATAGGCGGTTCAAA
Found at i:36265557 original size:19 final size:17
Alignment explanation
Indices: 36265514--36265548 Score: 70
Period size: 17 Copynumber: 2.1 Consensus size: 17
36265504 AAAGAGATAG
36265514 TATTAATTTTAAAATAT
1 TATTAATTTTAAAATAT
36265531 TATTAATTTTAAAATAT
1 TATTAATTTTAAAATAT
36265548 T
1 T
36265549 GAATTAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 18 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (17 bp):
TATTAATTTTAAAATAT
Found at i:36265608 original size:21 final size:21
Alignment explanation
Indices: 36265562--36265667 Score: 54
Period size: 21 Copynumber: 5.0 Consensus size: 21
36265552 TTAATTATCA
* *
36265562 TTATAGTTTAGGGTTTATGGT
1 TTATGGTTAAGGGTTTATGGT
*
36265583 ATATGGTTAAGGGTTTAAT-GT
1 TTATGGTTAAGGGTTT-ATGGT
*** *
36265604 TTATGAGTT-ACTATTGTAAGGT
1 TTATG-GTTAAGGGTT-TATGGT
* * *
36265626 TTATGGATTATGGGTTTAGGGA
1 TTATGG-TTAAGGGTTTATGGT
* *
36265648 TTATGGTTTATGGTTTATGG
1 TTATGGTTAAGGGTTTATGG
36265668 GTTAAAGGTT
Statistics
Matches: 61, Mismatches: 18, Indels: 12
0.67 0.20 0.13
Matches are distributed among these distances:
21 34 0.56
22 25 0.41
23 2 0.03
ACGTcount: A:0.23, C:0.01, G:0.29, T:0.47
Consensus pattern (21 bp):
TTATGGTTAAGGGTTTATGGT
Found at i:36265638 original size:7 final size:7
Alignment explanation
Indices: 36265623--36265667 Score: 54
Period size: 7 Copynumber: 6.3 Consensus size: 7
36265613 ACTATTGTAA
36265623 GGTTTAT
1 GGTTTAT
*
36265630 GGATTAT
1 GGTTTAT
*
36265637 GGGTTTAG
1 -GGTTTAT
*
36265645 GGATTAT
1 GGTTTAT
36265652 GGTTTAT
1 GGTTTAT
36265659 GGTTTAT
1 GGTTTAT
36265666 GG
1 GG
36265668 GTTAAAGGTT
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
7 26 0.84
8 5 0.16
ACGTcount: A:0.18, C:0.00, G:0.36, T:0.47
Consensus pattern (7 bp):
GGTTTAT
Found at i:36265643 original size:15 final size:15
Alignment explanation
Indices: 36265623--36265670 Score: 71
Period size: 15 Copynumber: 3.3 Consensus size: 15
36265613 ACTATTGTAA
36265623 GGTTTATGGATTATG
1 GGTTTATGGATTATG
*
36265638 GGTTTAGGGATTAT-
1 GGTTTATGGATTATG
*
36265652 GGTTTATGGTTTATG
1 GGTTTATGGATTATG
36265667 GGTT
1 GGTT
36265671 AAAGGTTGTG
Statistics
Matches: 29, Mismatches: 3, Indels: 2
0.85 0.09 0.06
Matches are distributed among these distances:
14 12 0.41
15 17 0.59
ACGTcount: A:0.17, C:0.00, G:0.35, T:0.48
Consensus pattern (15 bp):
GGTTTATGGATTATG
Found at i:36265723 original size:14 final size:15
Alignment explanation
Indices: 36265699--36265727 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
36265689 TTAAGGGATT
36265699 GGGGTTTAAGGTTTA
1 GGGGTTTAAGGTTTA
36265714 GGGG-TTAAGGTTTA
1 GGGGTTTAAGGTTTA
36265728 TTCTTTTCCG
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.21, C:0.00, G:0.41, T:0.38
Consensus pattern (15 bp):
GGGGTTTAAGGTTTA
Found at i:36266229 original size:34 final size:34
Alignment explanation
Indices: 36266185--36266252 Score: 118
Period size: 34 Copynumber: 2.0 Consensus size: 34
36266175 TATCAAGATT
*
36266185 CTTGCAATCCTCTTCTATTTAGTTGTCTTACATA
1 CTTGCAATCCTCTTCTATTTAGTTGCCTTACATA
*
36266219 CTTGCTATCCTCTTCTATTTAGTTGCCTTACATA
1 CTTGCAATCCTCTTCTATTTAGTTGCCTTACATA
36266253 AAAAATGTTG
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.19, C:0.25, G:0.09, T:0.47
Consensus pattern (34 bp):
CTTGCAATCCTCTTCTATTTAGTTGCCTTACATA
Found at i:36269465 original size:20 final size:21
Alignment explanation
Indices: 36269413--36269473 Score: 61
Period size: 21 Copynumber: 2.8 Consensus size: 21
36269403 AAATTTCAAG
36269413 AATTAAACATAATATAATATTTA
1 AATTAAA-ATAA-ATAATATTTA
* *
36269436 AAATAGAAATAAATATTATTT-
1 AATTA-AAATAAATAATATTTA
36269457 AATTAAAATAAAATAAT
1 AATTAAAAT-AAATAAT
36269474 TTTTTAAAAG
Statistics
Matches: 32, Mismatches: 4, Indels: 6
0.76 0.10 0.14
Matches are distributed among these distances:
20 4 0.12
21 10 0.31
22 8 0.25
23 8 0.25
24 2 0.06
ACGTcount: A:0.61, C:0.02, G:0.02, T:0.36
Consensus pattern (21 bp):
AATTAAAATAAATAATATTTA
Found at i:36274692 original size:5 final size:5
Alignment explanation
Indices: 36274684--36274745 Score: 67
Period size: 5 Copynumber: 12.4 Consensus size: 5
36274674 AAAAAAAAAG
*
36274684 AGAAA AGAAA AGAAA AG-AA AGAAA TA-AAGA AGAAAA AGAAA A-AGA
1 AGAAA AGAAA AGAAA AGAAA AGAAA -AGAA-A AG-AAA AGAAA AGAAA
36274729 AGAAA AGAAA AGAAA AG
1 AGAAA AGAAA AGAAA AG
36274746 GAGAGGCCAA
Statistics
Matches: 49, Mismatches: 2, Indels: 12
0.78 0.03 0.19
Matches are distributed among these distances:
4 7 0.14
5 35 0.71
6 5 0.10
7 2 0.04
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (5 bp):
AGAAA
Found at i:36274714 original size:8 final size:8
Alignment explanation
Indices: 36274677--36274744 Score: 55
Period size: 9 Copynumber: 7.5 Consensus size: 8
36274667 GATCAACAAA
36274677 AAAAAAGAG
1 AAAAAA-AG
36274686 AAAAGAAAAG
1 -AAA-AAAAG
36274696 AAAAGAAAG
1 AAAA-AAAG
*
36274705 AAATAAAG
1 AAAAAAAG
36274713 AAGAAAAAG
1 AA-AAAAAG
36274722 AAAAAGAAG
1 AAAAA-AAG
36274731 AAAAGAAAAG
1 -AAA-AAAAG
36274741 AAAA
1 AAAA
36274745 GGAGAGGCCA
Statistics
Matches: 50, Mismatches: 2, Indels: 14
0.76 0.03 0.21
Matches are distributed among these distances:
8 11 0.22
9 23 0.46
10 11 0.22
11 5 0.10
ACGTcount: A:0.79, C:0.00, G:0.19, T:0.01
Consensus pattern (8 bp):
AAAAAAAG
Found at i:36276058 original size:44 final size:44
Alignment explanation
Indices: 36276009--36276345 Score: 428
Period size: 44 Copynumber: 7.9 Consensus size: 44
36275999 TCCTTTAAGT
* *
36276009 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
* * *
36276053 AGATAACAGATTTTGCGTCTCTGTAGCGGTGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
*
36276097 AGATAACAGATTT--AG---C-G--GT---GGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
36276130 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
36276174 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
** * *
36276218 AGATAGTAGATTTGGCGTCTCTGTAGTGGAGGAGAGCAAATCGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
* * *
36276262 AGATAATAGATTTGGTGTCTCTATAGTGGCGGAGAGCA-AGTCGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGA-TCGA
* * * *
36276306 AGATAGCAAATTTGGCGTATCTGTAGTGGCAGAGAGCAGA
1 AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGA
36276346 CGTCTCTGTA
Statistics
Matches: 259, Mismatches: 21, Indels: 25
0.85 0.07 0.08
Matches are distributed among these distances:
33 27 0.10
35 1 0.00
36 1 0.00
38 2 0.01
39 2 0.01
41 2 0.01
42 1 0.00
43 1 0.00
44 221 0.85
45 1 0.00
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.23
Consensus pattern (44 bp):
AGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
Found at i:36276113 original size:33 final size:33
Alignment explanation
Indices: 36276076--36276142 Score: 134
Period size: 33 Copynumber: 2.0 Consensus size: 33
36276066 TGCGTCTCTG
36276076 TAGCGGTGGAGAGCAGATCGAAGATAACAGATT
1 TAGCGGTGGAGAGCAGATCGAAGATAACAGATT
36276109 TAGCGGTGGAGAGCAGATCGAAGATAACAGATT
1 TAGCGGTGGAGAGCAGATCGAAGATAACAGATT
36276142 T
1 T
36276143 GGCGTCTCTG
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.36, C:0.12, G:0.33, T:0.19
Consensus pattern (33 bp):
TAGCGGTGGAGAGCAGATCGAAGATAACAGATT
Found at i:36276127 original size:77 final size:77
Alignment explanation
Indices: 36276032--36276274 Score: 288
Period size: 77 Copynumber: 3.0 Consensus size: 77
36276022 GGCGTCTCTG
* * * * *
36276032 TAGCGGCGGAGAGTAGATCGAAGATAACAGATTTTGCGTCTCTGTAGCGGTGGAGAGCAGATCGA
1 TAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGAGGAGAGCAGATCGA
36276097 AGATAACAGATT
66 AGATAACAGATT
*
36276109 TAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
1 TAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGAGGAGAGCAGATCGA
36276174 AGATAACAGATT
66 AGATAACAGATT
* **
36276186 TGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGAGGA
1 T--AG---C-G--GT---GGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGAGGA
* *
36276251 GAGCAAATCGAAGATAATAGATT
55 GAGCAGATCGAAGATAACAGATT
36276274 T
1 T
36276275 GGTGTCTCTA
Statistics
Matches: 144, Mismatches: 11, Indels: 11
0.87 0.07 0.07
Matches are distributed among these distances:
77 73 0.51
79 1 0.01
82 1 0.01
83 1 0.01
85 2 0.01
88 66 0.46
ACGTcount: A:0.30, C:0.14, G:0.33, T:0.23
Consensus pattern (77 bp):
TAGCGGTGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGAGGAGAGCAGATCGA
AGATAACAGATT
Found at i:36276387 original size:157 final size:157
Alignment explanation
Indices: 36276189--36276502 Score: 477
Period size: 157 Copynumber: 2.0 Consensus size: 157
36276179 ACAGATTTGG
* * * **
36276189 CGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGAGGAGAG
1 CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAATAGATTTGGCGTCTCCATAGTGGAGGAGAG
* * * *
36276254 CAAATCGAAGATAATAGATTTGGTGTCTCTATAGTGGCGGAGAGCA-AGTCGAAGATAGCAAATT
66 CAAATCGAAGATAATAGATTTGGCGTCTCTATAGTGGCAGAGAGCAGA-TCGAAAATAACAAATT
36276318 TGGCGTATCTGTAGTGGCAGAGAGCAGA
130 TGGCGTATCTGTAGTGGCAGAGAGCAGA
*
36276346 CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAATAGATTTGGCGTCTCCATAGTGGCGGAGAG
1 CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAATAGATTTGGCGTCTCCATAGTGGAGGAGAG
* * *
36276411 CAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGCAGAGAGCAGATCGAAAATAACAAATTT
66 CAAATCGAAGATAATAGATTTGGCGTCTCTATAGTGGCAGAGAGCAGATCGAAAATAACAAATTT
* *
36276476 GGCGTCTCTGTAGTGGCGGAGAGCAGA
131 GGCGTATCTGTAGTGGCAGAGAGCAGA
36276503 TCGAAGATAA
Statistics
Matches: 141, Mismatches: 15, Indels: 2
0.89 0.09 0.01
Matches are distributed among these distances:
157 140 0.99
158 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.24
Consensus pattern (157 bp):
CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAATAGATTTGGCGTCTCCATAGTGGAGGAGAG
CAAATCGAAGATAATAGATTTGGCGTCTCTATAGTGGCAGAGAGCAGATCGAAAATAACAAATTT
GGCGTATCTGTAGTGGCAGAGAGCAGA
Found at i:36276389 original size:69 final size:69
Alignment explanation
Indices: 36276278--36276414 Score: 168
Period size: 69 Copynumber: 2.0 Consensus size: 69
36276268 TAGATTTGGT
* * * **
36276278 GTCTCTATAGTGGCGGAGAGCAAGTCGAAGATAGCAAATTTGGCGTATCTGTAGTGGCAGAGAGC
1 GTCTCTATAGTGGCAGAGAGCAAGTCAAAGATAACAAATTTGGCGTATCCATAGTGGCAGAGAGC
36276343 AGAC
66 AGAC
* * * * *
36276347 GTCTCTGTAGTGGCAGAGAGC-AGATCAAAGATAATAGATTTGGCGTCTCCATAGTGGCGGAGAG
1 GTCTCTATAGTGGCAGAGAGCAAG-TCAAAGATAACAAATTTGGCGTATCCATAGTGGCAGAGAG
36276411 CAGA
65 CAGA
36276415 TCGAAGATAG
Statistics
Matches: 57, Mismatches: 10, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
68 2 0.04
69 55 0.96
ACGTcount: A:0.29, C:0.16, G:0.33, T:0.22
Consensus pattern (69 bp):
GTCTCTATAGTGGCAGAGAGCAAGTCAAAGATAACAAATTTGGCGTATCCATAGTGGCAGAGAGC
AGAC
Found at i:36276395 original size:201 final size:201
Alignment explanation
Indices: 36276145--36276542 Score: 620
Period size: 201 Copynumber: 2.0 Consensus size: 201
36276135 ACAGATTTGG
* * **
36276145 CGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCGGAGAG
1 CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCCATAGTGGCGGAGAG
* * *
36276210 CAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGG-AGGAGAGCAAATCGAAGATAATAGATT
66 CAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGCA-GAGAGCAAATCGAAAATAACAAATT
* *
36276274 TGGTGTCTCTATAGTGGCGGAGAGCA-AGTCGAAGATAGCAAATTTGGCGTATCTGTAGTGGCAG
130 TGGCGTCTCTATAGTGGCGGAGAGCAGA-TCGAAGATAACAAATTTGGCGTATCTGTAGTGGCAG
36276338 AGAGCAGA
194 AGAGCAGA
*
36276346 CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAATAGATTTGGCGTCTCCATAGTGGCGGAGAG
1 CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCCATAGTGGCGGAGAG
*
36276411 CAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGCAGAGAGCAGATCGAAAATAACAAATTT
66 CAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGCAGAGAGCAAATCGAAAATAACAAATTT
* * * * *
36276476 GGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAATAGATTTGGCGTCTCTGTAGTGGCGGAG
131 GGCGTCTCTATAGTGGCGGAGAGCAGATCGAAGATAACAAATTTGGCGTATCTGTAGTGGCAGAG
36276541 AG
196 AG
36276543 TAGATCGAAG
Statistics
Matches: 179, Mismatches: 16, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
201 177 0.99
202 2 0.01
ACGTcount: A:0.28, C:0.15, G:0.33, T:0.24
Consensus pattern (201 bp):
CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAACAGATTTGGCGTCTCCATAGTGGCGGAGAG
CAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGCAGAGAGCAAATCGAAAATAACAAATTT
GGCGTCTCTATAGTGGCGGAGAGCAGATCGAAGATAACAAATTTGGCGTATCTGTAGTGGCAGAG
AGCAGA
Found at i:36276410 original size:44 final size:44
Alignment explanation
Indices: 36276346--36276600 Score: 350
Period size: 44 Copynumber: 5.8 Consensus size: 44
36276336 AGAGAGCAGA
*
36276346 CGTCTCTGTAGTGGCAGAGAGCAGATCAAAGATAATAGATTTGG
1 CGTCTCTGTAGTGGCGGAGAGCAGATCAAAGATAATAGATTTGG
** * *
36276390 CGTCTCCATAGTGGCGGAGAGCAGATCGAAGATAGTAGATTTGG
1 CGTCTCTGTAGTGGCGGAGAGCAGATCAAAGATAATAGATTTGG
* * *
36276434 CGTCTCTGTAGTGGCAGAGAGCAGATCGAAA-ATAACAAATTTGG
1 CGTCTCTGTAGTGGCGGAGAGCAGATC-AAAGATAATAGATTTGG
*
36276478 CGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAATAGATTTGG
1 CGTCTCTGTAGTGGCGGAGAGCAGATCAAAGATAATAGATTTGG
* *
36276522 CGTCTCTGTAGTGGCGGAGAGTAGATCGAAGATAATAGATTTGG
1 CGTCTCTGTAGTGGCGGAGAGCAGATCAAAGATAATAGATTTGG
* * * *
36276566 CGTCTCTATATTAGACGGGGAGCAGATCAAAGATA
1 CGTCTCTGTAGT-GGCGGAGAGCAGATCAAAGATA
36276601 GCAGATATCG
Statistics
Matches: 185, Mismatches: 23, Indels: 5
0.87 0.11 0.02
Matches are distributed among these distances:
43 2 0.01
44 163 0.88
45 20 0.11
ACGTcount: A:0.30, C:0.15, G:0.31, T:0.24
Consensus pattern (44 bp):
CGTCTCTGTAGTGGCGGAGAGCAGATCAAAGATAATAGATTTGG
Found at i:36276432 original size:113 final size:113
Alignment explanation
Indices: 36276233--36276458 Score: 357
Period size: 113 Copynumber: 2.0 Consensus size: 113
36276223 GTAGATTTGG
* * *
36276233 CGTCTCTGTAGTGGAGGAGAGCAAATCGAAGATAATAGATTTGGTGTCTCTATAGTGGCGGAGAG
1 CGTCTCTGTAGTGGAGGAGAGCAAATCAAAGATAATAGATTTGGCGTCTCCATAGTGGCGGAGAG
36276298 CAAGTCGAAGATAGCAAATTTGGCGTATCTGTAGTGGCAGAGAGCAGA
66 CAAGTCGAAGATAGCAAATTTGGCGTATCTGTAGTGGCAGAGAGCAGA
*
36276346 CGTCTCTGTAGTGGCA-GAGAGCAGATCAAAGATAATAGATTTGGCGTCTCCATAGTGGCGGAGA
1 CGTCTCTGTAGTGG-AGGAGAGCAAATCAAAGATAATAGATTTGGCGTCTCCATAGTGGCGGAGA
* * *
36276410 GC-AGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGCAGAGAGCAGA
65 GCAAG-TCGAAGATAGCAAATTTGGCGTATCTGTAGTGGCAGAGAGCAGA
36276459 TCGAAAATAA
Statistics
Matches: 104, Mismatches: 7, Indels: 4
0.90 0.06 0.03
Matches are distributed among these distances:
112 2 0.02
113 101 0.97
114 1 0.01
ACGTcount: A:0.29, C:0.15, G:0.33, T:0.23
Consensus pattern (113 bp):
CGTCTCTGTAGTGGAGGAGAGCAAATCAAAGATAATAGATTTGGCGTCTCCATAGTGGCGGAGAG
CAAGTCGAAGATAGCAAATTTGGCGTATCTGTAGTGGCAGAGAGCAGA
Found at i:36276566 original size:245 final size:250
Alignment explanation
Indices: 36276009--36276568 Score: 754
Period size: 245 Copynumber: 2.2 Consensus size: 250
36275999 TCCTTTAAGT
* * * *
36276009 AGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGAAGATAACAGATTTTGCGTCTC
1 AGATAATAGATTTGGCGTCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACAGATTTGGCGTATC
** * ** *
36276074 TGTAGCGGTGGAGAGCAGATCGAAGATAACAGATTTAGCGGTGGAGAGCAGATCGAAGATAACAG
66 TGTAGCGGCAGAGAGCAGATC--AGAT-ACAGATGTAGCGGCAGAGAGCAGATCAAAGATAACAG
**
36276139 ATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGC
128 ATTTGGCGTCTCCATAGTGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGC
* * ** *
36276204 GGAGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGAGGAGAGCAAATCGA
193 AGAGAGCAGATCGAAAATAACAAATTTGGCGTCTCTGTAGTGGAGGAGAGCAAATCGA
* * * * *
36276262 AGATAATAGATTTGGTGTCTCTATAGTGGCGGAGAGCA-AGTCGAAGATAGCAAATTTGGCGTAT
1 AGATAATAGATTTGGCGTCTCTGTAGTGGCGGAGAGTAGA-TCGAAGATAACAGATTTGGCGTAT
* ** * *
36276326 CTGTAGTGGCAGAGAGCAGA-C-G-T-C-TCTGTAGTGGCAGAGAGCAGATCAAAGATAATAGAT
65 CTGTAGCGGCAGAGAGCAGATCAGATACAGATGTAGCGGCAGAGAGCAGATCAAAGATAACAGAT
**
36276386 TTGGCGTCTCCATAGTGGCGGAGAGCAGATCGAAGATAGTAGATTTGGCGTCTCTGTAGTGGCAG
130 TTGGCGTCTCCATAGTGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCAG
* *
36276451 AGAGCAGATCGAAAATAACAAATTTGGCGTCTCTGTAGTGGCGGAGAGCAGATCGA
195 AGAGCAGATCGAAAATAACAAATTTGGCGTCTCTGTAGTGGAGGAGAGCAAATCGA
*
36276507 AGATAATAGATTTGGCGTCTCTGTAGTGGCGGAGAGTAGATCGAAGATAATAGATTTGGCGT
1 AGATAATAGATTTGGCGTCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACAGATTTGGCGT
36276569 CTCTATATTA
Statistics
Matches: 268, Mismatches: 37, Indels: 12
0.85 0.12 0.04
Matches are distributed among these distances:
245 192 0.72
246 2 0.01
248 1 0.00
249 1 0.00
252 2 0.01
253 70 0.26
ACGTcount: A:0.29, C:0.14, G:0.33, T:0.24
Consensus pattern (250 bp):
AGATAATAGATTTGGCGTCTCTGTAGTGGCGGAGAGTAGATCGAAGATAACAGATTTGGCGTATC
TGTAGCGGCAGAGAGCAGATCAGATACAGATGTAGCGGCAGAGAGCAGATCAAAGATAACAGATT
TGGCGTCTCCATAGTGGCGGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGTGGCAGA
GAGCAGATCGAAAATAACAAATTTGGCGTCTCTGTAGTGGAGGAGAGCAAATCGA
Found at i:36276745 original size:44 final size:44
Alignment explanation
Indices: 36276693--36276901 Score: 199
Period size: 44 Copynumber: 4.7 Consensus size: 44
36276683 AGCGGCAGAG
* *
36276693 AGCAGATCGAAGATAACAGATTTGGCGTTTCCGTAGCGACGAAA
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGAAA
* * * *
36276737 AGCAGATCGAAGACAACAGATTTGGTGTTTCTGTAGCGGC-AGAA
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGA-AA
* * * *
36276781 AGCAGGTCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAG
1 AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGAAA
* * * * *
36276825 AGTAGATCGAAGA-AGCATGATTTGGCATCTCTGTAGC-AGCGGAG
1 AGCAGATCGAAGATAACA-GATTTGGCGTCTCTGTAGCGA-CGAAA
* * *
36276869 AGTAGATCGAAGATAGCATGATTTGGCATCTCT
1 AGCAGATCGAAGATAACA-GATTTGGCGTCTCT
36276902 ATATTAGGCA
Statistics
Matches: 145, Mismatches: 15, Indels: 9
0.86 0.09 0.05
Matches are distributed among these distances:
43 4 0.03
44 122 0.84
45 19 0.13
ACGTcount: A:0.30, C:0.17, G:0.30, T:0.23
Consensus pattern (44 bp):
AGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGAAA
Found at i:36276832 original size:88 final size:88
Alignment explanation
Indices: 36276682--36276901 Score: 262
Period size: 88 Copynumber: 2.5 Consensus size: 88
36276672 GATCAAGAAC
* *
36276682 TAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTTTCCGTAGCGACGAAAAGCAGATCGA
1 TAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGAAAAGCAGATCGA
** *
36276747 AGACAACA-GATTTGGTGTTTCTG
66 AGA-AACATGATTTGGCATCTCTG
* * * * * *
36276770 TAGCGGCAGAAAGCAGGTCGAAGATAACAGATTTGGCGTCTCTGTAGCGGCGGAGAGTAGATCGA
1 TAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGAAAAGCAGATCGA
*
36276835 AGAAGCATGATTTGGCATCTCTG
66 AGAAACATGATTTGGCATCTCTG
* * * * *
36276858 TAGCAGCGGAGAGTAGATCGAAGATAGCATGATTTGGCATCTCT
1 TAGCGGCAGAGAGCAGATCGAAGATAACA-GATTTGGCGTCTCT
36276902 ATATTAGGCA
Statistics
Matches: 111, Mismatches: 19, Indels: 3
0.83 0.14 0.02
Matches are distributed among these distances:
87 3 0.03
88 95 0.86
89 13 0.12
ACGTcount: A:0.30, C:0.17, G:0.31, T:0.22
Consensus pattern (88 bp):
TAGCGGCAGAGAGCAGATCGAAGATAACAGATTTGGCGTCTCTGTAGCGACGAAAAGCAGATCGA
AGAAACATGATTTGGCATCTCTG
Found at i:36277053 original size:44 final size:44
Alignment explanation
Indices: 36276688--36277059 Score: 147
Period size: 44 Copynumber: 8.4 Consensus size: 44
36276678 GAACTAGCGG
* * * * *
36276688 CAGAGAGCAGATCGAAGATAACAGATTTGGCGTTTCCGTAG-CGA
1 CAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT-GTTGA
* * * ** * * *
36276732 C-GAAAAGCAGATCGAAGACAACAGATTTGGTGTTTCTGTAG-CGG
1 CAG-AGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT-GTTGA
* * * * * *
36276776 CAGAAAGCAGGTCGAAGATAACAGATTTGGCGTCTCTGTAG-CGG
1 CAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGT-GTTGA
* * **
36276820 CGGAGAGTAGATCGAAGA-AGCATGATTTGGCATCTCTGTAGCAG-
1 CAGAGAGCAGATCGAAGATAGCA-GATTTGGCATCTCTGT-GTTGA
* * * * *
36276864 CGGAGAGTAGATCGAAGATAGCATGATTTGGCATCTCTATATTAGG
1 CAGAGAGCAGATCGAAGATAGCA-GATTTGGCATCTCTGTGTT-GA
* * * * * *
36276910 CAGGGAGCAGATCAAAGACATAGCTGATTTGGC-TTTCACGTGTTTA
1 CAGAGAGCAGATCGAAG--ATAGCAGATTTGGCATCTC-TGTGTTGA
* * * * * * *
36276956 C-GTTGAAGCAAATCCAAG-T---AGATTTGACGTCTCTGTATTGT
1 CAG-AG-AGCAGATCGAAGATAGCAGATTTGGCATCTCTGTGTTGA
* *
36276997 TAGAGGGCAGATCGAAGATAGCAGATTTGGCATCTCTGTGTTGA
1 CAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTGTTGA
*
36277041 CAGAGAGTAGATCGAAGAT
1 CAGAGAGCAGATCGAAGAT
36277060 GGTGAATCTA
Statistics
Matches: 257, Mismatches: 53, Indels: 36
0.74 0.15 0.10
Matches are distributed among these distances:
40 9 0.04
41 13 0.05
42 4 0.02
43 4 0.02
44 159 0.62
45 24 0.09
46 18 0.07
47 21 0.08
48 5 0.02
ACGTcount: A:0.30, C:0.16, G:0.29, T:0.25
Consensus pattern (44 bp):
CAGAGAGCAGATCGAAGATAGCAGATTTGGCATCTCTGTGTTGA
Found at i:36277658 original size:24 final size:22
Alignment explanation
Indices: 36277631--36277680 Score: 57
Period size: 22 Copynumber: 2.2 Consensus size: 22
36277621 CTCCACACCT
*
36277631 GCAAAGAAACAGACAAACACAACA
1 GCAAAG-AACAGACAAAAACAA-A
*
36277655 GC-AAGAACAGGCAAAAACAAA
1 GCAAAGAACAGACAAAAACAAA
36277676 GCAAA
1 GCAAA
36277681 AAAAAACAGC
Statistics
Matches: 23, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
21 3 0.13
22 15 0.65
23 3 0.13
24 2 0.09
ACGTcount: A:0.62, C:0.22, G:0.16, T:0.00
Consensus pattern (22 bp):
GCAAAGAACAGACAAAAACAAA
Found at i:36279595 original size:48 final size:47
Alignment explanation
Indices: 36279518--36279624 Score: 178
Period size: 48 Copynumber: 2.2 Consensus size: 47
36279508 TAATTTCGTC
36279518 TCATTTCAAAAAATGCATTAATACATTTTAAGCTAGTTTTATAAGTAT
1 TCATTT-AAAAAATGCATTAATACATTTTAAGCTAGTTTTATAAGTAT
* *
36279566 TCATTTAAAAGAATGCATTAGTACGTTTTAAGCTAGTTTTATAAGTAT
1 TCATTTAAAA-AATGCATTAATACATTTTAAGCTAGTTTTATAAGTAT
36279614 TCATTTAAAAA
1 TCATTTAAAAA
36279625 TTCTTTAAAA
Statistics
Matches: 56, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
47 5 0.09
48 51 0.91
ACGTcount: A:0.39, C:0.09, G:0.10, T:0.41
Consensus pattern (47 bp):
TCATTTAAAAAATGCATTAATACATTTTAAGCTAGTTTTATAAGTAT
Found at i:36280113 original size:135 final size:130
Alignment explanation
Indices: 36279891--36280223 Score: 343
Period size: 135 Copynumber: 2.5 Consensus size: 130
36279881 CAATACTCGG
* * * *
36279891 TGTTTGACAATTTGGGAATCATGCCCTATCGTGCTGGGTTGTGATTTCTCATTTGTTCAAAATAA
1 TGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAA
* * * * **
36279956 TCGAACGTTCCTTTAAGTTTTCACTCATGTTTTTTTTAAGAAAAAC-CTTTAAAAC-AAATGCGA
66 TCGAACGTCCCTTTAAG-TTTCACTCACG--TTTTCT---AAAAACTCTTGAAAACGAAA-GAAA
*
36280019 TGTTCGA
124 TGTTCAA
* * * *
36280026 TGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTTCAAAATGA
1 TGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAA
*
36280091 TCGAA-GATCCCTTTGGAA-TTTCACTCACGTTTTCTAAAAACTCTTGAAAACGGAAGAAATGTT
66 TCGAACG-TCCCTTT--AAGTTTCACTCACGTTTTCTAAAAACTCTTGAAAACGAAAGAAATGTT
36280154 CAA
128 CAA
* * * *
36280157 TGTTTGGCAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTGC-AATCCCCAGTTTGTTCAAAAT
1 TGTTTGGCAATTC-GGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCA-TTTGTTCAAAAT
36280221 AAT
64 AAT
36280224 TGAATGTCTT
Statistics
Matches: 167, Mismatches: 24, Indels: 17
0.80 0.12 0.08
Matches are distributed among these distances:
130 6 0.04
131 32 0.19
132 43 0.26
133 5 0.03
134 1 0.01
135 78 0.47
137 2 0.01
ACGTcount: A:0.26, C:0.18, G:0.20, T:0.36
Consensus pattern (130 bp):
TGTTTGGCAATTCGGGAATCGTGCCCTATCGTGCTGGGTTGCGATTTCTCATTTGTTCAAAATAA
TCGAACGTCCCTTTAAGTTTCACTCACGTTTTCTAAAAACTCTTGAAAACGAAAGAAATGTTCAA
Found at i:36280256 original size:132 final size:131
Alignment explanation
Indices: 36280018--36280259 Score: 292
Period size: 132 Copynumber: 1.8 Consensus size: 131
36280008 AACAAATGCG
* * ** ***
36280018 ATGTTCGATGTTTGGCAATTCGAGAATCGTGCCCTATCGTGCTGGGTTGCGCTTTTTCATTTGTT
1 ATGTTCAATGTTTGGCAATTCGAGAATAGTGCCCTATCGTGCTGGGTTGCGAATCCCCATTTGTT
* * *
36280083 CAAAATGATCGAAGATCCCTTTGGAATTTCACTCACGTTTTCTAAAAACTCTTGAAAACGGAAGA
66 CAAAATAATCGAAGATCCCTTTGAAATTTCACTCACATTTTCTAAAAACTCTTGAAAACGGAAGA
36280148 A
131 A
*
36280149 ATGTTCAATGTTTGGCAATTCGGGGAATAGTGCCCTATCGTGCTGGGTTGC-AATCCCCAGTTTG
1 ATGTTCAATGTTTGGCAATTC-GAGAATAGTGCCCTATCGTGCTGGGTTGCGAATCCCCA-TTTG
* * **
36280213 TTCAAAATAATTGAATG-T-CTTTTCGAAATTTCACTCGTATTTTCTAA
64 TTCAAAATAATCGAA-GATCCCTTT-GAAATTTCACTCACATTTTCTAA
36280260 GATGAGGCAA
Statistics
Matches: 92, Mismatches: 15, Indels: 7
0.81 0.13 0.06
Matches are distributed among these distances:
131 27 0.29
132 64 0.70
133 1 0.01
ACGTcount: A:0.25, C:0.19, G:0.20, T:0.36
Consensus pattern (131 bp):
ATGTTCAATGTTTGGCAATTCGAGAATAGTGCCCTATCGTGCTGGGTTGCGAATCCCCATTTGTT
CAAAATAATCGAAGATCCCTTTGAAATTTCACTCACATTTTCTAAAAACTCTTGAAAACGGAAGA
A
Found at i:36282743 original size:32 final size:29
Alignment explanation
Indices: 36282688--36282746 Score: 82
Period size: 31 Copynumber: 2.0 Consensus size: 29
36282678 AATATTAATT
*
36282688 TTTGAAATTTTAAATTTAATTTAAAAATG
1 TTTGAAATTTTAAAATTAATTTAAAAATG
*
36282717 TTTGAATATCTTTAAAATTAATTTTAAAAT
1 TTTGAA-AT-TTTAAAATTAATTTAAAAAT
36282747 TAATAATTTA
Statistics
Matches: 26, Mismatches: 2, Indels: 2
0.87 0.07 0.07
Matches are distributed among these distances:
29 6 0.23
30 2 0.08
31 18 0.69
ACGTcount: A:0.44, C:0.02, G:0.05, T:0.49
Consensus pattern (29 bp):
TTTGAAATTTTAAAATTAATTTAAAAATG
Found at i:36282776 original size:12 final size:13
Alignment explanation
Indices: 36282722--36282776 Score: 51
Period size: 12 Copynumber: 4.0 Consensus size: 13
36282712 AAATGTTTGA
36282722 ATATCTTTAAAATT
1 ATAT-TTTAAAATT
36282736 A-ATTTTAAAATT
1 ATATTTTAAAATT
36282748 AATAATTTATAAAAATT
1 -AT-ATTT-T-AAAATT
36282765 ATA-TTTAAAATT
1 ATATTTTAAAATT
36282777 TAAAAAAATT
Statistics
Matches: 36, Mismatches: 0, Indels: 12
0.75 0.00 0.25
Matches are distributed among these distances:
12 15 0.42
13 4 0.11
14 3 0.08
15 5 0.14
16 3 0.08
17 6 0.17
ACGTcount: A:0.51, C:0.02, G:0.00, T:0.47
Consensus pattern (13 bp):
ATATTTTAAAATT
Found at i:36282789 original size:17 final size:19
Alignment explanation
Indices: 36282767--36282803 Score: 60
Period size: 17 Copynumber: 2.1 Consensus size: 19
36282757 TAAAAATTAT
36282767 ATTTAAAAT-TTA-AAAAA
1 ATTTAAAATATTATAAAAA
36282784 ATTTAAAATATTATAAAAA
1 ATTTAAAATATTATAAAAA
36282803 A
1 A
36282804 ATAAATTTGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
17 9 0.50
18 3 0.17
19 6 0.33
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (19 bp):
ATTTAAAATATTATAAAAA
Found at i:36282833 original size:41 final size:41
Alignment explanation
Indices: 36282788--36282918 Score: 144
Period size: 41 Copynumber: 3.3 Consensus size: 41
36282778 AAAAAAATTT
*
36282788 AAAATATTATAAAAAAATAAATTTGAAAGGTCATATCTTTA
1 AAAATAATATAAAAAAATAAATTTGAAAGGTCATATCTTTA
*** *** *
36282829 AAAATAATATATTTTAAAT-AATTT-AAAAACCATA-ATTT-
1 AAAATAATATA-AAAAAATAAATTTGAAAGGTCATATCTTTA
*
36282867 AAAATATTATAAAAAAATAAATTTGAAAGGTCATATCTTTA
1 AAAATAATATAAAAAAATAAATTTGAAAGGTCATATCTTTA
36282908 AAAATAATATA
1 AAAATAATATA
36282919 TTTTAAATAA
Statistics
Matches: 68, Mismatches: 17, Indels: 10
0.72 0.18 0.11
Matches are distributed among these distances:
37 4 0.06
38 15 0.22
39 10 0.15
40 10 0.15
41 25 0.37
42 4 0.06
ACGTcount: A:0.56, C:0.05, G:0.05, T:0.35
Consensus pattern (41 bp):
AAAATAATATAAAAAAATAAATTTGAAAGGTCATATCTTTA
Found at i:36282876 original size:79 final size:79
Alignment explanation
Indices: 36282783--36282964 Score: 355
Period size: 79 Copynumber: 2.3 Consensus size: 79
36282773 AATTTAAAAA
36282783 AATTTAAAATATTATAAAAAAATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAAT
1 AATTTAAAATATTATAAAAAAATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAAT
36282848 AATTTAAAAACCAT
66 AATTTAAAAACCAT
36282862 AATTTAAAATATTATAAAAAAATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAAT
1 AATTTAAAATATTATAAAAAAATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAAT
36282927 AATTTAAAAACCAT
66 AATTTAAAAACCAT
36282941 AATTTAAAATATTATAAAACAAAT
1 AATTTAAAATATTATAAAA-AAAT
36282965 TAAAAATATT
Statistics
Matches: 102, Mismatches: 0, Indels: 1
0.99 0.00 0.01
Matches are distributed among these distances:
79 98 0.96
80 4 0.04
ACGTcount: A:0.55, C:0.05, G:0.03, T:0.36
Consensus pattern (79 bp):
AATTTAAAATATTATAAAAAAATAAATTTGAAAGGTCATATCTTTAAAAATAATATATTTTAAAT
AATTTAAAAACCAT
Found at i:36282970 original size:21 final size:20
Alignment explanation
Indices: 36282941--36282979 Score: 60
Period size: 21 Copynumber: 1.9 Consensus size: 20
36282931 TAAAAACCAT
*
36282941 AATTTAAAATATTATAAAACA
1 AATTAAAAATATT-TAAAACA
36282962 AATTAAAAATATTTAAAA
1 AATTAAAAATATTTAAAA
36282980 TTTAAAATAT
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
20 5 0.29
21 12 0.71
ACGTcount: A:0.64, C:0.03, G:0.00, T:0.33
Consensus pattern (20 bp):
AATTAAAAATATTTAAAACA
Found at i:36282986 original size:16 final size:16
Alignment explanation
Indices: 36282961--36283009 Score: 50
Period size: 16 Copynumber: 3.2 Consensus size: 16
36282951 ATTATAAAAC
*
36282961 AAATTAAAAATATTTA
1 AAATTTAAAATATTTA
36282977 AAATTTAAAATA--T-
1 AAATTTAAAATATTTA
*
36282990 ACATTTAAAATATTATA
1 AAATTTAAAATATT-TA
36283007 AAA
1 AAA
36283010 CTAATAATAA
Statistics
Matches: 26, Mismatches: 3, Indels: 7
0.72 0.08 0.19
Matches are distributed among these distances:
13 11 0.42
14 1 0.04
16 12 0.46
17 2 0.08
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.37
Consensus pattern (16 bp):
AAATTTAAAATATTTA
Found at i:36283090 original size:21 final size:20
Alignment explanation
Indices: 36283066--36283154 Score: 82
Period size: 21 Copynumber: 4.5 Consensus size: 20
36283056 TTATATTATT
*
36283066 AAAAATATATTTAATATTTA
1 AAAAATATATTTAAAATTTA
36283086 AAAAATAATATTTAAAATTTA
1 AAAAAT-ATATTTAAAATTTA
36283107 AAAAA-A-A--T--AATTTCA
1 AAAAATATATTTAAAATTT-A
36283122 AAAATATATATTTAAAATTTTAA
1 AAAA-ATATATTTAAAA-TTT-A
36283145 AAAAATATAT
1 AAAAATATAT
36283155 ATTATAAAAC
Statistics
Matches: 57, Mismatches: 2, Indels: 18
0.74 0.03 0.23
Matches are distributed among these distances:
14 5 0.09
15 5 0.09
16 2 0.04
17 1 0.02
18 2 0.04
19 1 0.02
20 7 0.12
21 18 0.32
22 8 0.14
23 8 0.14
ACGTcount: A:0.61, C:0.01, G:0.00, T:0.38
Consensus pattern (20 bp):
AAAAATATATTTAAAATTTA
Found at i:36283196 original size:23 final size:22
Alignment explanation
Indices: 36283122--36283196 Score: 69
Period size: 23 Copynumber: 3.2 Consensus size: 22
36283112 AATAATTTCA
*
36283122 AAAATATATATTTAAAATTTTAAA
1 AAAATATATATTTAAAATTTT--T
**
36283146 AAAATATATATTATAAAACATTT
1 AAAATATATATT-TAAAATTTTT
* *
36283169 CAAATATATATTTCGAAATTTTT
1 AAAATATATATTT-AAAATTTTT
36283192 AAAAT
1 AAAAT
36283197 TAATAATAAA
Statistics
Matches: 41, Mismatches: 8, Indels: 5
0.76 0.15 0.09
Matches are distributed among these distances:
22 1 0.02
23 21 0.51
24 12 0.29
25 7 0.17
ACGTcount: A:0.53, C:0.04, G:0.01, T:0.41
Consensus pattern (22 bp):
AAAATATATATTTAAAATTTTT
Found at i:36288075 original size:284 final size:282
Alignment explanation
Indices: 36287557--36288124 Score: 1055
Period size: 284 Copynumber: 2.0 Consensus size: 282
36287547 CGAGAACATC
36287557 ATTTGAATTGTATGAAGAGATAATTAATTTTTAGTGAAGAAGAGTTAGAACTGTCAACAGCAGAA
1 ATTTGAATTGTATGAAGAGATAATTAATTTTTAGTGAAGAAGAGTTAGAACTGTCAACAGCAGAA
36287622 CAGGGGTGACTTTAAAGAATAAACTGTACTGATTGGCTAAACCAAAACTTACAAAAATTTTATGG
66 CAGGGGTGACTTTAAAGAATAAACTGTACTGATTGGCTAAACCAAAACTTACAAAAATTTTATGG
*
36287687 TAAGAAGATATGTGAGTCTAGTTTCATGTAAAATTATCAGATACTAATTTGGAGTTCTTTAGCTC
131 TAAGAAGATATGTGAGTCTAGTTTCATGTAAAATTATCAGATACTAATTTGGAGTTCTGTAGCTC
*
36287752 AAGATAAAAATAGTTTAGTGACTATGAATCAAGTAGACAGCTTTGAATGAACTATAAATAATAGT
196 AAGATAAAAATAATTTAGTGACTATGAATCAAGTAGACAGCTTTGAATGAACTATAAATAATAGT
*
36287817 TGAATTATAGAGAATGTTGCAT
261 TGAATTATAAAGAATGTTGCAT
*
36287839 ATTTGAATTCTGTATGAAGAGATAATTAATTTTTAGTGAAGAAGGGTTAGAACTGTCAACAGCAG
1 ATTTGAA-T-TGTATGAAGAGATAATTAATTTTTAGTGAAGAAGAGTTAGAACTGTCAACAGCAG
*
36287904 AACAGGGGTGACTTTAAAGAATAAACTGTACTGATTGGCTAAACCAAAACTTATAAAAATTTTAT
64 AACAGGGGTGACTTTAAAGAATAAACTGTACTGATTGGCTAAACCAAAACTTACAAAAATTTTAT
*
36287969 GGTAAGAAGATATGTGAGTCTAGTTTCATGTAAAATTATCATATACTAATTTGGAGTTCTGTAGC
129 GGTAAGAAGATATGTGAGTCTAGTTTCATGTAAAATTATCAGATACTAATTTGGAGTTCTGTAGC
*
36288034 TCAAGATAAAAATAATTTAGTGACTATGACTCAAGTAGACAGCTTTGAATGAACTATAAATAATA
194 TCAAGATAAAAATAATTTAGTGACTATGAATCAAGTAGACAGCTTTGAATGAACTATAAATAATA
36288099 GTTGAATTATAAAGAATGTTGCAT
259 GTTGAATTATAAAGAATGTTGCAT
36288123 AT
1 AT
36288125 GAACATGAAA
Statistics
Matches: 277, Mismatches: 7, Indels: 2
0.97 0.02 0.01
Matches are distributed among these distances:
282 7 0.03
283 1 0.00
284 269 0.97
ACGTcount: A:0.40, C:0.09, G:0.19, T:0.32
Consensus pattern (282 bp):
ATTTGAATTGTATGAAGAGATAATTAATTTTTAGTGAAGAAGAGTTAGAACTGTCAACAGCAGAA
CAGGGGTGACTTTAAAGAATAAACTGTACTGATTGGCTAAACCAAAACTTACAAAAATTTTATGG
TAAGAAGATATGTGAGTCTAGTTTCATGTAAAATTATCAGATACTAATTTGGAGTTCTGTAGCTC
AAGATAAAAATAATTTAGTGACTATGAATCAAGTAGACAGCTTTGAATGAACTATAAATAATAGT
TGAATTATAAAGAATGTTGCAT
Found at i:36296535 original size:46 final size:46
Alignment explanation
Indices: 36296468--36296685 Score: 382
Period size: 46 Copynumber: 4.7 Consensus size: 46
36296458 AACCCGCCCC
* * *
36296468 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
* * *
36296514 TAAGTGAACTCGGACTCAACTCAACGAGCTCGGGCGTTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
36296560 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
36296606 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
36296652 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
1 TAAGTGAACTCGGACTCAACTCAACGAGTTCGGA
36296686 TGCTCAACCA
Statistics
Matches: 169, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
46 169 1.00
ACGTcount: A:0.29, C:0.28, G:0.22, T:0.21
Consensus pattern (46 bp):
TAAGTGAACTCGGACTCAACTCAACGAGTTCGGACATTCGCATCCA
Found at i:36302147 original size:51 final size:51
Alignment explanation
Indices: 36302071--36302172 Score: 177
Period size: 51 Copynumber: 2.0 Consensus size: 51
36302061 TATATCAGAT
36302071 AGAGATCCCCGATTTACGTCTCGTTTCTGGGACAAATTGCAAGAAGCCTTG
1 AGAGATCCCCGATTTACGTCTCGTTTCTGGGACAAATTGCAAGAAGCCTTG
** *
36302122 AGAGATCCTTGATTTACGTCTCGTTTCTGGGACAATTTGCAAGAAGCCTTG
1 AGAGATCCCCGATTTACGTCTCGTTTCTGGGACAAATTGCAAGAAGCCTTG
36302173 GGTACTCAGT
Statistics
Matches: 48, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 48 1.00
ACGTcount: A:0.25, C:0.22, G:0.24, T:0.30
Consensus pattern (51 bp):
AGAGATCCCCGATTTACGTCTCGTTTCTGGGACAAATTGCAAGAAGCCTTG
Found at i:36305850 original size:14 final size:14
Alignment explanation
Indices: 36305827--36305856 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36305817 TTGAAAATAT
36305827 GTTGAATTGGATTG
1 GTTGAATTGGATTG
*
36305841 GTTGATTTGGATTG
1 GTTGAATTGGATTG
36305855 GT
1 GT
36305857 CTCGATATAA
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.17, C:0.00, G:0.37, T:0.47
Consensus pattern (14 bp):
GTTGAATTGGATTG
Found at i:36307940 original size:14 final size:14
Alignment explanation
Indices: 36307902--36307941 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
36307892 ACAAAAAAGT
*
36307902 AAAACATTTTCCAG
1 AAAACATTTTACAG
* *
36307916 AAATCATTTTACGG
1 AAAACATTTTACAG
36307930 AAAACATTTTAC
1 AAAACATTTTAC
36307942 TGACAATCAA
Statistics
Matches: 22, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 22 1.00
ACGTcount: A:0.42, C:0.17, G:0.07, T:0.33
Consensus pattern (14 bp):
AAAACATTTTACAG
Found at i:36311749 original size:19 final size:19
Alignment explanation
Indices: 36311725--36311764 Score: 80
Period size: 19 Copynumber: 2.1 Consensus size: 19
36311715 AAGTGTGAGA
36311725 AAGAAAATAAAATTGTTAT
1 AAGAAAATAAAATTGTTAT
36311744 AAGAAAATAAAATTGTTAT
1 AAGAAAATAAAATTGTTAT
36311763 AA
1 AA
36311765 TATAATTAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 21 1.00
ACGTcount: A:0.60, C:0.00, G:0.10, T:0.30
Consensus pattern (19 bp):
AAGAAAATAAAATTGTTAT
Found at i:36312198 original size:17 final size:17
Alignment explanation
Indices: 36312154--36312200 Score: 53
Period size: 17 Copynumber: 2.9 Consensus size: 17
36312144 ACACTATGAT
*
36312154 ATAATATATA-TAT-AT
1 ATAATATATATTATAAA
* *
36312169 ATGATATACATTATAAA
1 ATAATATATATTATAAA
36312186 ATAATATATATTATA
1 ATAATATATATTATA
36312201 TGTTAAGACT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
15 8 0.32
16 3 0.12
17 14 0.56
ACGTcount: A:0.53, C:0.02, G:0.02, T:0.43
Consensus pattern (17 bp):
ATAATATATATTATAAA
Found at i:36312767 original size:39 final size:38
Alignment explanation
Indices: 36312693--36312767 Score: 89
Period size: 39 Copynumber: 1.9 Consensus size: 38
36312683 TTTTAATAAG
* * **
36312693 ATTATTATTAAATATAATTTAATAATATTCTTAATATA
1 ATTATTATTAAATATAATTTAATAAAAATAATAATATA
36312731 ATTATTATTAAAATATGAA-TTAATAAAAATAATAATA
1 ATTATTATT-AAATAT-AATTTAATAAAAATAATAATA
36312768 AATAATATTA
Statistics
Matches: 31, Mismatches: 4, Indels: 3
0.82 0.11 0.08
Matches are distributed among these distances:
38 9 0.29
39 20 0.65
40 2 0.06
ACGTcount: A:0.53, C:0.01, G:0.01, T:0.44
Consensus pattern (38 bp):
ATTATTATTAAATATAATTTAATAAAAATAATAATATA
Found at i:36323438 original size:38 final size:39
Alignment explanation
Indices: 36323379--36323464 Score: 97
Period size: 38 Copynumber: 2.3 Consensus size: 39
36323369 TTTTAAATTA
* * *
36323379 TTTAAAAA-ATTTGGAAAAATAACATA-TAATTA-TATTT
1 TTTAAAAATATATGGAAAAATAAAATACT-ATTACTATTG
*
36323416 TTTAAAAATATATGTAAAAATAAAATACTATTACTATTG
1 TTTAAAAATATATGGAAAAATAAAATACTATTACTATTG
*
36323455 TATAAAAATA
1 TTTAAAAATA
36323465 ACATTTTAAA
Statistics
Matches: 41, Mismatches: 5, Indels: 4
0.82 0.10 0.08
Matches are distributed among these distances:
37 8 0.20
38 19 0.46
39 14 0.34
ACGTcount: A:0.53, C:0.03, G:0.05, T:0.38
Consensus pattern (39 bp):
TTTAAAAATATATGGAAAAATAAAATACTATTACTATTG
Found at i:36326434 original size:99 final size:99
Alignment explanation
Indices: 36326314--36326742 Score: 587
Period size: 99 Copynumber: 4.3 Consensus size: 99
36326304 TATTGTATAT
* * *
36326314 CAAGTACGCTAA-ATGATATGTTAACACTTTCATAACTGATTCATTCCCATTCATTTTCAAAAGT
1 CAAGTACGC-AACATGGTATGTTAATACTTTCATAACTGATTCATTCTCATTCATTTTCAAAA-T
*
36326378 -ATAAATGTGGACACTTTATCAATCACACAGAATAA
64 AATAAATGCGGACACTTTATCAATCACACAGAATAA
* * ***
36326413 CAAGTACACAACATGGTATGTTAATACTTTCATACCTGATTCATTCTCATTCATTTTCTGTAT-A
1 CAAGTACGCAACATGGTATGTTAATACTTTCATAACTGATTCATTCTCATTCATTTTCAAAATAA
* * *
36326477 TAAATACGGAGACTTTATCAATCACAGAGAATAA
66 TAAATGCGGACACTTTATCAATCACACAGAATAA
* * * *
36326511 AAAGTACGCAACATGGTATGTTAATTCTTTCATACCTGATTCATTCTCATTAATTTTCAAAATAA
1 CAAGTACGCAACATGGTATGTTAATACTTTCATAACTGATTCATTCTCATTCATTTTCAAAATAA
* *
36326576 TAAATGCGAACACTTTATCGATCACACAGAATAA
66 TAAATGCGGACACTTTATCAATCACACAGAATAA
* *
36326610 CAAGTACGCAACATGGTATGTTAATACTTTCAT-ACATGACTCATTCTCATTCATTTTCAACATA
1 CAAGTACGCAACATGGTATGTTAATACTTTCATAAC-TGATTCATTCTCATTCATTTTCAAAATA
* * **
36326674 ATAAATGCAGACACATTATCGCTCACACAGAATAA
65 ATAAATGCGGACACTTTATCAATCACACAGAATAA
36326709 CAAGTACGCAACATGGTATGTTAATACTTTCATA
1 CAAGTACGCAACATGGTATGTTAATACTTTCATA
36326743 CCTCATATGT
Statistics
Matches: 292, Mismatches: 34, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
98 91 0.31
99 201 0.69
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (99 bp):
CAAGTACGCAACATGGTATGTTAATACTTTCATAACTGATTCATTCTCATTCATTTTCAAAATAA
TAAATGCGGACACTTTATCAATCACACAGAATAA
Found at i:36326656 original size:197 final size:198
Alignment explanation
Indices: 36326315--36326745 Score: 616
Period size: 197 Copynumber: 2.2 Consensus size: 198
36326305 ATTGTATATC
* * * *
36326315 AAGTACGCTAA-ATGATATGTTAACACTTTCATAACTGATTCATTCCCATTCATTTTCAAAAGTA
1 AAGTACGC-AACATGGTATGTTAATACTTTCATACCTGATTCATTCCCATTAATTTTCAAAAGTA
* *
36326379 TAAATGTGGACACTTTATCAATCACACAGAATAACAAGTACACAACATGGTATGTTAATACTTTC
65 TAAATGCGAACACTTTATCAATCACACAGAATAACAAGTACACAACATGGTATGTTAATACTTTC
* * *** * * * *
36326444 ATACCTGATTCATTCTCATTCATTTTCTGTAT-ATAAATACGGAGACTTTATCAATCACAGAGAA
130 ATACATGACTCATTCTCATTCATTTTCAACATAATAAATACAGACACATTATCAATCACACAGAA
36326508 TAAA
195 TAAA
* *
36326512 AAGTACGCAACATGGTATGTTAATTCTTTCATACCTGATTCATTCTCATTAATTTTCAAAA-TAA
1 AAGTACGCAACATGGTATGTTAATACTTTCATACCTGATTCATTCCCATTAATTTTCAAAAGT-A
* *
36326576 TAAATGCGAACACTTTATCGATCACACAGAATAACAAGTACGCAACATGGTATGTTAATACTTTC
65 TAAATGCGAACACTTTATCAATCACACAGAATAACAAGTACACAACATGGTATGTTAATACTTTC
* **
36326641 ATACATGACTCATTCTCATTCATTTTCAACATAATAAATGCAGACACATTATCGCTCACACAGAA
130 ATACATGACTCATTCTCATTCATTTTCAACATAATAAATACAGACACATTATCAATCACACAGAA
*
36326706 TAAC
195 TAAA
36326710 AAGTACGCAACATGGTATGTTAATACTTTCATACCT
1 AAGTACGCAACATGGTATGTTAATACTTTCATACCT
36326746 CATATGTTTT
Statistics
Matches: 207, Mismatches: 24, Indels: 5
0.88 0.10 0.02
Matches are distributed among these distances:
196 3 0.01
197 141 0.68
198 63 0.30
ACGTcount: A:0.37, C:0.19, G:0.11, T:0.33
Consensus pattern (198 bp):
AAGTACGCAACATGGTATGTTAATACTTTCATACCTGATTCATTCCCATTAATTTTCAAAAGTAT
AAATGCGAACACTTTATCAATCACACAGAATAACAAGTACACAACATGGTATGTTAATACTTTCA
TACATGACTCATTCTCATTCATTTTCAACATAATAAATACAGACACATTATCAATCACACAGAAT
AAA
Found at i:36331669 original size:11 final size:11
Alignment explanation
Indices: 36331653--36331677 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
36331643 TAAGTCTTGA
36331653 AATTAACACAT
1 AATTAACACAT
36331664 AATTAACACAT
1 AATTAACACAT
36331675 AAT
1 AAT
36331678 ATTAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.56, C:0.16, G:0.00, T:0.28
Consensus pattern (11 bp):
AATTAACACAT
Found at i:36333178 original size:25 final size:24
Alignment explanation
Indices: 36333142--36333191 Score: 82
Period size: 25 Copynumber: 2.0 Consensus size: 24
36333132 ATGATTTAAC
*
36333142 ATTTTTTTCCTAATTTGGTATCTA
1 ATTTTTTACCTAATTTGGTATCTA
36333166 ATTTTTTAACCTAATTTGGTATCTA
1 ATTTTTT-ACCTAATTTGGTATCTA
36333191 A
1 A
36333192 ACTTGTCAAA
Statistics
Matches: 24, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 7 0.29
25 17 0.71
ACGTcount: A:0.26, C:0.12, G:0.08, T:0.54
Consensus pattern (24 bp):
ATTTTTTACCTAATTTGGTATCTA
Found at i:36333865 original size:26 final size:26
Alignment explanation
Indices: 36333785--36333868 Score: 107
Period size: 26 Copynumber: 3.2 Consensus size: 26
36333775 TAAGTGCTAC
*
36333785 ATTAGATAAAAAAATTTAAATATTAA
1 ATTAAATAAAAAAATTTAAATATTAA
* **
36333811 ATTAAA-AAAATCAAATTTATATACCAA
1 ATTAAATAAAA--AAATTTAAATATTAA
36333838 ATTAAATAAAAAAATTTAAATATTAA
1 ATTAAATAAAAAAATTTAAATATTAA
36333864 ATTAA
1 ATTAA
36333869 GAAAAAGAAT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
25 4 0.08
26 22 0.46
27 18 0.38
28 4 0.08
ACGTcount: A:0.62, C:0.04, G:0.01, T:0.33
Consensus pattern (26 bp):
ATTAAATAAAAAAATTTAAATATTAA
Found at i:36333874 original size:26 final size:25
Alignment explanation
Indices: 36333792--36333883 Score: 105
Period size: 26 Copynumber: 3.6 Consensus size: 25
36333782 TACATTAGAT
36333792 AAAAAAATTTAAATATTAAATTAAA
1 AAAAAAATTTAAATATTAAATTAAA
* **
36333817 AAAATCAAATTTATATACCAAATTAAA
1 AAAA--AAATTTAAATATTAAATTAAA
36333844 TAAAAAAATTTAAATATTAAATTAAGA
1 -AAAAAAATTTAAATATTAAATTAA-A
*
36333871 AAAAGAA-TTAAAT
1 AAAAAAATTTAAAT
36333884 TCATATATCA
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
25 10 0.18
26 23 0.41
27 19 0.34
28 4 0.07
ACGTcount: A:0.64, C:0.03, G:0.02, T:0.30
Consensus pattern (25 bp):
AAAAAAATTTAAATATTAAATTAAA
Found at i:36333935 original size:2 final size:2
Alignment explanation
Indices: 36333928--36333952 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36333918 GTTCTTATCT
36333928 GA GA GA GA GA GA GA GA GA GA GA GA G
1 GA GA GA GA GA GA GA GA GA GA GA GA G
36333953 GGCGAACATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.52, T:0.00
Consensus pattern (2 bp):
GA
Found at i:36336569 original size:19 final size:21
Alignment explanation
Indices: 36336531--36336579 Score: 66
Period size: 19 Copynumber: 2.4 Consensus size: 21
36336521 GGGACATATT
36336531 GTCAACTCTAGAAGGACGAGTG
1 GTCAA-TCTAGAAGGACGAGTG
36336553 GTCAATCTAG-A-GACGAGTG
1 GTCAATCTAGAAGGACGAGTG
*
36336572 GTTAATCT
1 GTCAATCT
36336580 CGAGGAGTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
19 15 0.58
20 1 0.04
21 5 0.19
22 5 0.19
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24
Consensus pattern (21 bp):
GTCAATCTAGAAGGACGAGTG
Found at i:36353018 original size:86 final size:89
Alignment explanation
Indices: 36352910--36353074 Score: 225
Period size: 86 Copynumber: 1.9 Consensus size: 89
36352900 ATGTCATCTC
* *
36352910 ATATCGATGCCACTGTCCCAGACAG-GGTCTTACACG-AATCA-A-ATA-CGATGCCAATGTCCC
1 ATATCGATGCCACTGTCCCAGAC-GTGGTCTTACACGAAAACACATATATCGATG-CAACGTCCC
*
36352970 CGACATGGTCTTACACTTAACCACAT
64 AGACATGGTCTTACACTTAACCACAT
*
36352996 ATATCGATGCCAAC-GTCCCAGACGTGGTCTTACACGAAAACACATATATTGATGCAACGTCCCA
1 ATATCGATGCC-ACTGTCCCAGACGTGGTCTTACACGAAAACACATATATCGATGCAACGTCCCA
36353060 GACATGGTCTTACAC
65 GACATGGTCTTACAC
36353075 GAAAACACAT
Statistics
Matches: 69, Mismatches: 4, Indels: 9
0.84 0.05 0.11
Matches are distributed among these distances:
85 1 0.01
86 31 0.45
87 6 0.09
88 1 0.01
89 26 0.38
90 4 0.06
ACGTcount: A:0.31, C:0.29, G:0.17, T:0.23
Consensus pattern (89 bp):
ATATCGATGCCACTGTCCCAGACGTGGTCTTACACGAAAACACATATATCGATGCAACGTCCCAG
ACATGGTCTTACACTTAACCACAT
Found at i:36353069 original size:44 final size:45
Alignment explanation
Indices: 36352910--36353086 Score: 222
Period size: 45 Copynumber: 4.0 Consensus size: 45
36352900 ATGTCATCTC
* *
36352910 ATATCGATGCC-ACTGTCCCAGACAGGGTCTTACACG-AATCA-A-
1 ATATCGATGCCAAC-GTCCCAGACATGGTCTTACACGAAAACACAT
* * ** *
36352952 ATA-CGATGCCAATGTCCCCGACATGGTCTTACACTTAACCACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
*
36352996 ATATCGATGCCAACGTCCCAGACGTGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
*
36353041 ATATTGATG-CAACGTCCCAGACATGGTCTTACACGAAAACACAT
1 ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
36353085 AT
1 AT
36353087 TAGAATCCTA
Statistics
Matches: 117, Mismatches: 13, Indels: 8
0.85 0.09 0.06
Matches are distributed among these distances:
41 26 0.22
42 8 0.07
43 1 0.01
44 39 0.33
45 43 0.37
ACGTcount: A:0.33, C:0.28, G:0.16, T:0.23
Consensus pattern (45 bp):
ATATCGATGCCAACGTCCCAGACATGGTCTTACACGAAAACACAT
Found at i:36360034 original size:12 final size:13
Alignment explanation
Indices: 36360005--36360029 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
36359995 CATATATCTC
36360005 ATTTTTTTAAAAT
1 ATTTTTTTAAAAT
36360018 ATTTTTTTAAAA
1 ATTTTTTTAAAA
36360030 GTTTTACTAT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.40, C:0.00, G:0.00, T:0.60
Consensus pattern (13 bp):
ATTTTTTTAAAAT
Found at i:36364417 original size:3 final size:3
Alignment explanation
Indices: 36364409--36364437 Score: 58
Period size: 3 Copynumber: 9.7 Consensus size: 3
36364399 CGAACTTCAA
36364409 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC AT
36364438 ATAAAACGCG
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 26 1.00
ACGTcount: A:0.34, C:0.31, G:0.00, T:0.34
Consensus pattern (3 bp):
ATC
Found at i:36365803 original size:25 final size:25
Alignment explanation
Indices: 36365775--36365823 Score: 98
Period size: 25 Copynumber: 2.0 Consensus size: 25
36365765 ATTAGAGGTA
36365775 TAACTTGCCCAAATACATTAAGGAG
1 TAACTTGCCCAAATACATTAAGGAG
36365800 TAACTTGCCCAAATACATTAAGGA
1 TAACTTGCCCAAATACATTAAGGA
36365824 ATGGTAAATT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.41, C:0.20, G:0.14, T:0.24
Consensus pattern (25 bp):
TAACTTGCCCAAATACATTAAGGAG
Found at i:36367205 original size:34 final size:34
Alignment explanation
Indices: 36367162--36367231 Score: 131
Period size: 34 Copynumber: 2.1 Consensus size: 34
36367152 TCTCCATCTT
36367162 TTGTACTATTCGTTCTTTTGCCATTATAGTAAAA
1 TTGTACTATTCGTTCTTTTGCCATTATAGTAAAA
*
36367196 TTGTACTATTCGTTCTTTTTCCATTATAGTAAAA
1 TTGTACTATTCGTTCTTTTGCCATTATAGTAAAA
36367230 TT
1 TT
36367232 ATCTTTGCCT
Statistics
Matches: 35, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 35 1.00
ACGTcount: A:0.26, C:0.14, G:0.10, T:0.50
Consensus pattern (34 bp):
TTGTACTATTCGTTCTTTTGCCATTATAGTAAAA
Found at i:36375003 original size:21 final size:21
Alignment explanation
Indices: 36374975--36375027 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
36374965 AACAGCAGTG
*
36374975 GCGGTGAGATTGGTTACTGTA
1 GCGGTGAGATTGGATACTGTA
*
36374996 GTGGTGAGATTGGATACTGTA
1 GCGGTGAGATTGGATACTGTA
36375017 GCGGTGAGATT
1 GCGGTGAGATT
36375028 AGAAGCAGCG
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.21, C:0.08, G:0.40, T:0.32
Consensus pattern (21 bp):
GCGGTGAGATTGGATACTGTA
Found at i:36379076 original size:34 final size:34
Alignment explanation
Indices: 36379038--36379104 Score: 125
Period size: 34 Copynumber: 2.0 Consensus size: 34
36379028 TATTATAAAA
36379038 CATAAAAATTAGAAAGCCATGCATGCATTCATTG
1 CATAAAAATTAGAAAGCCATGCATGCATTCATTG
*
36379072 CATAAAAATTAGAAAGCCATGCATTCATTCATT
1 CATAAAAATTAGAAAGCCATGCATGCATTCATT
36379105 TTAGTGCCGA
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
34 32 1.00
ACGTcount: A:0.42, C:0.18, G:0.12, T:0.28
Consensus pattern (34 bp):
CATAAAAATTAGAAAGCCATGCATGCATTCATTG
Found at i:36382384 original size:26 final size:26
Alignment explanation
Indices: 36382355--36382462 Score: 189
Period size: 26 Copynumber: 4.2 Consensus size: 26
36382345 TGGTACAAAT
36382355 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
* *
36382381 TGATAATGGATTAGGTAAATATTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36382407 TGATAATGGGTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
*
36382433 TGATAATGGTTTAGGTAAATGTTCCA
1 TGATAATGGGTTAGGTAAATGTTCCA
36382459 TGAT
1 TGAT
36382463 GGGCATTTCA
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
26 77 1.00
ACGTcount: A:0.32, C:0.07, G:0.24, T:0.36
Consensus pattern (26 bp):
TGATAATGGGTTAGGTAAATGTTCCA
Found at i:36390243 original size:36 final size:36
Alignment explanation
Indices: 36390196--36390267 Score: 144
Period size: 36 Copynumber: 2.0 Consensus size: 36
36390186 TGATTTGTGG
36390196 TCTCGAAACCACTGTTTCGATTTTACTGAAAACGGA
1 TCTCGAAACCACTGTTTCGATTTTACTGAAAACGGA
36390232 TCTCGAAACCACTGTTTCGATTTTACTGAAAACGGA
1 TCTCGAAACCACTGTTTCGATTTTACTGAAAACGGA
36390268 CTGTTACATC
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.31, C:0.22, G:0.17, T:0.31
Consensus pattern (36 bp):
TCTCGAAACCACTGTTTCGATTTTACTGAAAACGGA
Found at i:36394887 original size:10 final size:10
Alignment explanation
Indices: 36394872--36394900 Score: 58
Period size: 10 Copynumber: 2.9 Consensus size: 10
36394862 ACCCTAAAAA
36394872 TACAAGCATT
1 TACAAGCATT
36394882 TACAAGCATT
1 TACAAGCATT
36394892 TACAAGCAT
1 TACAAGCAT
36394901 AATTGACCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 19 1.00
ACGTcount: A:0.41, C:0.21, G:0.10, T:0.28
Consensus pattern (10 bp):
TACAAGCATT
Found at i:36395715 original size:24 final size:24
Alignment explanation
Indices: 36395674--36395738 Score: 89
Period size: 24 Copynumber: 2.8 Consensus size: 24
36395664 GCTCCTCCTG
*
36395674 AGCTGATAAATAGTAAGCTCTATTA
1 AGCTGA-AAACAGTAAGCTCTATTA
*
36395699 AGCTGAAAACAGTAAGCTCTATTG
1 AGCTGAAAACAGTAAGCTCTATTA
36395723 AGCTG--AACAGTAAGCT
1 AGCTGAAAACAGTAAGCT
36395739 TTTTTGAGCT
Statistics
Matches: 38, Mismatches: 2, Indels: 3
0.88 0.05 0.07
Matches are distributed among these distances:
22 11 0.29
24 21 0.55
25 6 0.16
ACGTcount: A:0.38, C:0.15, G:0.20, T:0.26
Consensus pattern (24 bp):
AGCTGAAAACAGTAAGCTCTATTA
Found at i:36395734 original size:22 final size:23
Alignment explanation
Indices: 36395685--36395785 Score: 100
Period size: 22 Copynumber: 4.4 Consensus size: 23
36395675 GCTGATAAAT
*
36395685 AGTAAGCTCTATTAAGCTGAAAAC
1 AGTAAGCTCTATTGAGCTG-AAAC
36395709 AGTAAGCTCTATTGAGCTG-AAC
1 AGTAAGCTCTATTGAGCTGAAAC
* *
36395731 AGTAAGCTTTTTTGAGCT-AAATC
1 AGTAAGCTCTATTGAGCTGAAA-C
* * *
36395754 AATAA-CTCCAGTGAGCTGAAAC
1 AGTAAGCTCTATTGAGCTGAAAC
*
36395776 ACTAAGCTCT
1 AGTAAGCTCT
36395786 TACGAGATGT
Statistics
Matches: 63, Mismatches: 10, Indels: 9
0.77 0.12 0.11
Matches are distributed among these distances:
22 34 0.54
23 11 0.17
24 18 0.29
ACGTcount: A:0.36, C:0.19, G:0.18, T:0.28
Consensus pattern (23 bp):
AGTAAGCTCTATTGAGCTGAAAC
Found at i:36398774 original size:26 final size:26
Alignment explanation
Indices: 36398744--36398808 Score: 103
Period size: 26 Copynumber: 2.5 Consensus size: 26
36398734 ATCGAGCCAT
* *
36398744 ATCGAGAATCTTACAAAGAGCCTTTA
1 ATCGAGAAGCTCACAAAGAGCCTTTA
36398770 ATCGAGAAGCTCACAAAGAGCCTTTA
1 ATCGAGAAGCTCACAAAGAGCCTTTA
*
36398796 ATCGGGAAGCTCA
1 ATCGAGAAGCTCA
36398809 TAAGAGCTGT
Statistics
Matches: 36, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
26 36 1.00
ACGTcount: A:0.37, C:0.22, G:0.20, T:0.22
Consensus pattern (26 bp):
ATCGAGAAGCTCACAAAGAGCCTTTA
Found at i:36399812 original size:8 final size:8
Alignment explanation
Indices: 36399801--36399825 Score: 50
Period size: 8 Copynumber: 3.1 Consensus size: 8
36399791 TATTAATTTA
36399801 TCATCTTT
1 TCATCTTT
36399809 TCATCTTT
1 TCATCTTT
36399817 TCATCTTT
1 TCATCTTT
36399825 T
1 T
36399826 ACTTTCCATT
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
8 17 1.00
ACGTcount: A:0.12, C:0.24, G:0.00, T:0.64
Consensus pattern (8 bp):
TCATCTTT
Found at i:36400712 original size:17 final size:17
Alignment explanation
Indices: 36400679--36400712 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
36400669 AGGTTACCCT
* *
36400679 TACCCCAAGTATGCCAC
1 TACCCCAAATATCCCAC
36400696 TACCCCAAATATCCCAC
1 TACCCCAAATATCCCAC
36400713 ATCTACAAGT
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.32, C:0.44, G:0.06, T:0.18
Consensus pattern (17 bp):
TACCCCAAATATCCCAC
Found at i:36403384 original size:21 final size:20
Alignment explanation
Indices: 36403358--36403406 Score: 53
Period size: 21 Copynumber: 2.4 Consensus size: 20
36403348 AGGCTCTCCT
*
36403358 TTTTTTTTTCTTTTCCATTTA
1 TTTTTTTTT-TATTCCATTTA
*
36403379 TTTTTTCTTTTATTCCTTTTA
1 TTTTTT-TTTTATTCCATTTA
*
36403400 ATTTTTT
1 TTTTTTT
36403407 AAAAAATTGA
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
20 1 0.04
21 20 0.83
22 3 0.12
ACGTcount: A:0.10, C:0.12, G:0.00, T:0.78
Consensus pattern (20 bp):
TTTTTTTTTTATTCCATTTA
Found at i:36403550 original size:16 final size:15
Alignment explanation
Indices: 36403515--36403552 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
36403505 TCTTCTTTAA
36403515 TTTT-TTTTTCTTTC
1 TTTTCTTTTTCTTTC
36403529 TCTTTCTTTTTCTTTTC
1 T-TTTCTTTTTC-TTTC
36403546 TTTTCTT
1 TTTTCTT
36403553 ATTTTCTCTT
Statistics
Matches: 21, Mismatches: 0, Indels: 4
0.84 0.00 0.16
Matches are distributed among these distances:
14 1 0.05
15 3 0.14
16 12 0.57
17 5 0.24
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (15 bp):
TTTTCTTTTTCTTTC
Found at i:36410521 original size:16 final size:16
Alignment explanation
Indices: 36410496--36410526 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36410486 GGATGAAATT
36410496 TTTCTAGTAATTACAC
1 TTTCTAGTAATTACAC
*
36410512 TTTCTTGTAATTACA
1 TTTCTAGTAATTACA
36410527 AAGAATTCTC
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.29, C:0.16, G:0.06, T:0.48
Consensus pattern (16 bp):
TTTCTAGTAATTACAC
Found at i:36411679 original size:46 final size:46
Alignment explanation
Indices: 36411626--36411718 Score: 168
Period size: 46 Copynumber: 2.0 Consensus size: 46
36411616 AGAATCTAAG
* *
36411626 TTAAAATTAACTTAGTGAGTTTTTACTATAACACACTCAATCATGA
1 TTAAAATTAACTTAGTGAGTTTTTAATATAACACACCCAATCATGA
36411672 TTAAAATTAACTTAGTGAGTTTTTAATATAACACACCCAATCATGA
1 TTAAAATTAACTTAGTGAGTTTTTAATATAACACACCCAATCATGA
36411718 T
1 T
36411719 ATTATTATGT
Statistics
Matches: 45, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
46 45 1.00
ACGTcount: A:0.40, C:0.15, G:0.09, T:0.37
Consensus pattern (46 bp):
TTAAAATTAACTTAGTGAGTTTTTAATATAACACACCCAATCATGA
Found at i:36411983 original size:28 final size:28
Alignment explanation
Indices: 36411934--36411989 Score: 76
Period size: 28 Copynumber: 2.0 Consensus size: 28
36411924 ATGTATTGAT
* **
36411934 TTCATACATGCGAGTTCGTAGATATGGA
1 TTCATACATGCAAGTTAATAGATATGGA
*
36411962 TTCATACATGCAAGTTAATAGATGTGGA
1 TTCATACATGCAAGTTAATAGATATGGA
36411990 ATTGTGCATG
Statistics
Matches: 24, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 24 1.00
ACGTcount: A:0.32, C:0.12, G:0.23, T:0.32
Consensus pattern (28 bp):
TTCATACATGCAAGTTAATAGATATGGA
Found at i:36412124 original size:28 final size:28
Alignment explanation
Indices: 36412092--36412182 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 28
36412082 TCCTGTAGAT
36412092 TCTTGCTTGAAAGATAGTCCATGCAAAC
1 TCTTGCTTGAAAGATAGTCCATGCAAAC
* * *
36412120 TCTTGCTTGAAAGGTAGTCTATGCGAAC
1 TCTTGCTTGAAAGATAGTCCATGCAAAC
* * * *
36412148 TCTTGCTTAAAAGTTAGTCCATGCAGAG
1 TCTTGCTTGAAAGATAGTCCATGCAAAC
36412176 TCTTGCT
1 TCTTGCT
36412183 CCATATGGAC
Statistics
Matches: 54, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
28 54 1.00
ACGTcount: A:0.26, C:0.20, G:0.21, T:0.33
Consensus pattern (28 bp):
TCTTGCTTGAAAGATAGTCCATGCAAAC
Found at i:36412234 original size:73 final size:73
Alignment explanation
Indices: 36412118--36412255 Score: 195
Period size: 73 Copynumber: 1.9 Consensus size: 73
36412108 GTCCATGCAA
* *
36412118 ACTCTTGCTTGAAAGGTAGTCTATGCGAACTCTTGCTTAAAAGTTAGTCCATGCAGAGTCTTGCT
1 ACTCTTGCTTGAAAGGTAGTCCATGCGAACTCTTGCTTAAAAGTTAGTCCATGCAGACTCTTGCT
36412183 CCATATGG
66 CCATATGG
* * * * * * *
36412191 ACTCTTGCTTGAAAGTTGGTCCATGTGGACTCTTTCTTGAAAGTTGGTCCATGCAGACTCTTGCT
1 ACTCTTGCTTGAAAGGTAGTCCATGCGAACTCTTGCTTAAAAGTTAGTCCATGCAGACTCTTGCT
36412256 TGAAATATAG
Statistics
Matches: 56, Mismatches: 9, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
73 56 1.00
ACGTcount: A:0.22, C:0.21, G:0.22, T:0.35
Consensus pattern (73 bp):
ACTCTTGCTTGAAAGGTAGTCCATGCGAACTCTTGCTTAAAAGTTAGTCCATGCAGACTCTTGCT
CCATATGG
Found at i:36412267 original size:101 final size:101
Alignment explanation
Indices: 36412092--36412283 Score: 235
Period size: 101 Copynumber: 1.9 Consensus size: 101
36412082 TCCTGTAGAT
*
36412092 TCTTGCTTGAAAGATAGTCCATGCAAACTCTTGCTTGAAAGGTAGTCTATGCGAACTCTTGCTTA
1 TCTTGCTTGAAAGATAGTCCATGCAAACTCTTGCTTGAAAGGTAGTCCATGCGAACTCTTGCTTA
*
36412157 AAAGTTAGTCCATGCAGAGTCTTGCTCCATATGGAC
66 AAAGTTAGTCCATGCAGACTCTTGCTCCATATGGAC
* * *** * * *
36412193 TCTTGCTTGAAAGTTGGTCCATGTGGACTCTTTCTTGAAAGTTGGTCCATGC-AGACTCTTGCTT
1 TCTTGCTTGAAAGATAGTCCATGCAAACTCTTGCTTGAAAGGTAGTCCATGCGA-ACTCTTGCTT
* * *
36412257 GAAA-TATAGTCCCTGCGGACTCTTGCT
65 AAAAGT-TAGTCCATGCAGACTCTTGCT
36412284 TGAATGATAG
Statistics
Matches: 76, Mismatches: 13, Indels: 4
0.82 0.14 0.04
Matches are distributed among these distances:
100 2 0.03
101 74 0.97
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (101 bp):
TCTTGCTTGAAAGATAGTCCATGCAAACTCTTGCTTGAAAGGTAGTCCATGCGAACTCTTGCTTA
AAAGTTAGTCCATGCAGACTCTTGCTCCATATGGAC
Found at i:36412293 original size:28 final size:28
Alignment explanation
Indices: 36412189--36412327 Score: 152
Period size: 28 Copynumber: 4.9 Consensus size: 28
36412179 TGCTCCATAT
* * *
36412189 GGACTCTTGCTTGAAAGTTGGTCCATGT
1 GGACTCTTGCTTGAAAGATAGTCCATGC
* * *
36412217 GGACTCTTTCTTGAAAGTTGGTCCATGC
1 GGACTCTTGCTTGAAAGATAGTCCATGC
* * *
36412245 AGACTCTTGCTTGAAATATAGTCCCTGC
1 GGACTCTTGCTTGAAAGATAGTCCATGC
*
36412273 GGACTCTTGCTTGAATGATAGTCCATGC
1 GGACTCTTGCTTGAAAGATAGTCCATGC
** *
36412301 ACTACTATTGCTTGAAAGATAGTCCAT
1 -GGACTCTTGCTTGAAAGATAGTCCAT
36412328 ATGGACTATC
Statistics
Matches: 94, Mismatches: 16, Indels: 1
0.85 0.14 0.01
Matches are distributed among these distances:
28 72 0.77
29 22 0.23
ACGTcount: A:0.23, C:0.21, G:0.22, T:0.34
Consensus pattern (28 bp):
GGACTCTTGCTTGAAAGATAGTCCATGC
Found at i:36413754 original size:16 final size:16
Alignment explanation
Indices: 36413733--36413763 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
36413723 GTTAAAAATA
36413733 ATATAAAATTTATAAT
1 ATATAAAATTTATAAT
*
36413749 ATATAACATTTATAA
1 ATATAAAATTTATAA
36413764 AAAAAAGTTT
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 14 1.00
ACGTcount: A:0.55, C:0.03, G:0.00, T:0.42
Consensus pattern (16 bp):
ATATAAAATTTATAAT
Found at i:36421511 original size:8 final size:8
Alignment explanation
Indices: 36421494--36421522 Score: 51
Period size: 8 Copynumber: 3.8 Consensus size: 8
36421484 TATATGCCAG
36421494 TTGT-GGA
1 TTGTGGGA
36421501 TTGTGGGA
1 TTGTGGGA
36421509 TTGTGGGA
1 TTGTGGGA
36421517 TTGTGG
1 TTGTGG
36421523 ACCCAATTGC
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
7 4 0.19
8 17 0.81
ACGTcount: A:0.10, C:0.00, G:0.48, T:0.41
Consensus pattern (8 bp):
TTGTGGGA
Found at i:36422674 original size:48 final size:48
Alignment explanation
Indices: 36422532--36422676 Score: 220
Period size: 48 Copynumber: 3.0 Consensus size: 48
36422522 AAAGAAATAT
* *
36422532 TTGAAAAGAGTAAGTTAATATGACTTTGTATGTGATATATGTTATGCA
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
*
36422580 TTGCAAAA-AGTAAGTTAATATAACTCTGTATGTGATATATGTTATGTA
1 TTG-AAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
* * *
36422628 TTGAAAAGAGTAAGTTAATATGACTCTATATGTGTTAAATGTTATGTA
1 TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
36422676 T
1 T
36422677 AATTGTTGAC
Statistics
Matches: 88, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
47 4 0.05
48 80 0.91
49 4 0.05
ACGTcount: A:0.37, C:0.05, G:0.19, T:0.40
Consensus pattern (48 bp):
TTGAAAAGAGTAAGTTAATATGACTCTGTATGTGATATATGTTATGTA
Found at i:36423566 original size:5 final size:6
Alignment explanation
Indices: 36423539--36423565 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
36423529 CCAAAATATA
36423539 TTTTAT TTTTAT TTTTAT TTTTAT TTT
1 TTTTAT TTTTAT TTTTAT TTTTAT TTT
36423566 ACCATATGGC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.15, C:0.00, G:0.00, T:0.85
Consensus pattern (6 bp):
TTTTAT
Found at i:36427138 original size:8 final size:8
Alignment explanation
Indices: 36427125--36427156 Score: 55
Period size: 8 Copynumber: 4.0 Consensus size: 8
36427115 CTAGATCGGC
36427125 AAAAGCCG
1 AAAAGCCG
36427133 AAAAGCCG
1 AAAAGCCG
*
36427141 AAATGCCG
1 AAAAGCCG
36427149 AAAAGCCG
1 AAAAGCCG
36427157 GTATTTTGGG
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 22 1.00
ACGTcount: A:0.47, C:0.25, G:0.25, T:0.03
Consensus pattern (8 bp):
AAAAGCCG
Found at i:36427443 original size:28 final size:28
Alignment explanation
Indices: 36427403--36427467 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36427393 ATGTACTAGA
*
36427403 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
36427431 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36427459 ATACCCCTA
1 ATACCCCTA
36427468 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36427631 original size:27 final size:27
Alignment explanation
Indices: 36427573--36427654 Score: 112
Period size: 28 Copynumber: 3.0 Consensus size: 27
36427563 AGGAAGCGTC
36427573 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
36427601 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
36427628 CTGGTGGCACTGCCACAAAATATCTGT
1 CTGGTGGCACTGCCAC-AAATATCTGT
36427655 ATTTGGTGAC
Statistics
Matches: 48, Mismatches: 4, Indels: 4
0.86 0.07 0.07
Matches are distributed among these distances:
27 23 0.48
28 25 0.52
ACGTcount: A:0.21, C:0.26, G:0.22, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:36427673 original size:29 final size:28
Alignment explanation
Indices: 36427583--36427673 Score: 94
Period size: 27 Copynumber: 3.2 Consensus size: 28
36427573 CTGGTGGCTA
* * *
36427583 TGCCACAAATTATCTGTTCTGGTGGCCC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
36427611 TGCCAC-ATATATCTGTTCTGGTGGCAC
1 TGCCACAAAATATCTGTTCTGGTGACAC
* *
36427638 TGCCACAAAATATCTGTATTTGGTGACTC
1 TGCCACAAAATATCTGT-TCTGGTGACAC
*
36427667 TGTCACA
1 TGCCACA
36427674 TTTTCTGTAT
Statistics
Matches: 53, Mismatches: 8, Indels: 3
0.83 0.12 0.05
Matches are distributed among these distances:
27 24 0.45
28 15 0.28
29 14 0.26
ACGTcount: A:0.22, C:0.25, G:0.20, T:0.33
Consensus pattern (28 bp):
TGCCACAAAATATCTGTTCTGGTGACAC
Found at i:36427681 original size:55 final size:56
Alignment explanation
Indices: 36427573--36427687 Score: 137
Period size: 55 Copynumber: 2.1 Consensus size: 56
36427563 AGGAAGCGTC
* *
36427573 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * * *
36427628 CTGGTGGC-ACTGCCACAAAATATCTGTATTTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
36427684 CTGG
1 CTGG
36427688 CAGCCATGCT
Statistics
Matches: 51, Mismatches: 6, Indels: 5
0.82 0.10 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.59
56 20 0.39
ACGTcount: A:0.19, C:0.23, G:0.22, T:0.36
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36428785 original size:11 final size:10
Alignment explanation
Indices: 36428757--36428790 Score: 50
Period size: 10 Copynumber: 3.3 Consensus size: 10
36428747 AGCCTATAAG
36428757 TATTCTGAAT
1 TATTCTGAAT
*
36428767 TTTTCTGAAT
1 TATTCTGAAT
36428777 ATATTCTGAAT
1 -TATTCTGAAT
36428788 TAT
1 TAT
36428791 CTGTCTGTAC
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
10 12 0.57
11 9 0.43
ACGTcount: A:0.29, C:0.09, G:0.09, T:0.53
Consensus pattern (10 bp):
TATTCTGAAT
Found at i:36435332 original size:28 final size:28
Alignment explanation
Indices: 36435300--36435364 Score: 112
Period size: 28 Copynumber: 2.3 Consensus size: 28
36435290 ATTTACTAGA
*
36435300 ATACCCCTATGTATGCAAAATTACCATT
1 ATACCCCTATGTATGCAAAATGACCATT
*
36435328 ATACCCCTATGTATGCAAAATGACCTTT
1 ATACCCCTATGTATGCAAAATGACCATT
36435356 ATACCCCTA
1 ATACCCCTA
36435365 GGGTTAATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
28 35 1.00
ACGTcount: A:0.34, C:0.28, G:0.08, T:0.31
Consensus pattern (28 bp):
ATACCCCTATGTATGCAAAATGACCATT
Found at i:36435528 original size:27 final size:27
Alignment explanation
Indices: 36435470--36435559 Score: 119
Period size: 28 Copynumber: 3.2 Consensus size: 27
36435460 AGGAAGCGTC
36435470 CTGGTGGCTA-TGCCACAAATTATCTGTT
1 CTGGTGGC-ACTGCCACAAA-TATCTGTT
* *
36435498 CTGGTGGCCCTGCCACATATATCTGTT
1 CTGGTGGCACTGCCACAAATATCTGTT
36435525 CTGGTGGCACTGCCACAAAATATCTGTAT
1 CTGGTGGCACTGCCAC-AAATATCTGT-T
36435554 CTGGTG
1 CTGGTG
36435560 ACTCTGTCAC
Statistics
Matches: 55, Mismatches: 4, Indels: 5
0.86 0.06 0.08
Matches are distributed among these distances:
27 23 0.42
28 25 0.45
29 7 0.13
ACGTcount: A:0.20, C:0.24, G:0.23, T:0.32
Consensus pattern (27 bp):
CTGGTGGCACTGCCACAAATATCTGTT
Found at i:36435578 original size:55 final size:56
Alignment explanation
Indices: 36435470--36435584 Score: 146
Period size: 55 Copynumber: 2.1 Consensus size: 56
36435460 AGGAAGCGTC
* *
36435470 CTGGTGGCTATGCCACAAATTATCTGTTCTGGTGGCCCTGCCACATATATCTGT-T
1 CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
* * *
36435525 CTGGTGGC-ACTGCCACAAAATATCTGTATCTGGTGACTCTGTCACAT-TTTCTGTAT
1 CTGGTGGCTA-TGCCACAAAATATCTGT-TCTGGTGACCCTGCCACATATATCTGTAT
36435581 CTGG
1 CTGG
36435585 CAGCCATGCT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
54 1 0.02
55 30 0.58
56 21 0.40
ACGTcount: A:0.19, C:0.24, G:0.22, T:0.35
Consensus pattern (56 bp):
CTGGTGGCTATGCCACAAAATATCTGTTCTGGTGACCCTGCCACATATATCTGTAT
Found at i:36436784 original size:29 final size:29
Alignment explanation
Indices: 36436751--36436806 Score: 76
Period size: 29 Copynumber: 1.9 Consensus size: 29
36436741 CATGTGTGCT
36436751 ACACGATCTGGAACACGGGCGTGTGTCCC
1 ACACGATCTGGAACACGGGCGTGTGTCCC
* * * *
36436780 ACACGGTCTGGAATATGGGTGTGTGTC
1 ACACGATCTGGAACACGGGCGTGTGTC
36436807 TTGACCGTGT
Statistics
Matches: 23, Mismatches: 4, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
29 23 1.00
ACGTcount: A:0.20, C:0.23, G:0.34, T:0.23
Consensus pattern (29 bp):
ACACGATCTGGAACACGGGCGTGTGTCCC
Found at i:36437368 original size:21 final size:22
Alignment explanation
Indices: 36437342--36437384 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
36437332 GACTTGTGCT
*
36437342 TTTGAGACTTTTT-TGAGTTAA
1 TTTGAGACTTTTTCCGAGTTAA
36437363 TTTGAGACTTTTTCCGAGTTAA
1 TTTGAGACTTTTTCCGAGTTAA
36437385 CGCCTAGTTC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 13 0.65
22 7 0.35
ACGTcount: A:0.23, C:0.09, G:0.19, T:0.49
Consensus pattern (22 bp):
TTTGAGACTTTTTCCGAGTTAA
Found at i:36437722 original size:5 final size:5
Alignment explanation
Indices: 36437705--36437748 Score: 54
Period size: 5 Copynumber: 8.6 Consensus size: 5
36437695 GAGGAAGAAG
*
36437705 AAAGA AGAAGA AAAGA AACGA CAAA-A AAAGA AAAGA AAAGA AAA
1 AAAGA A-AAGA AAAGA AAAGA -AAAGA AAAGA AAAGA AAAGA AAA
36437749 TTAATTACAC
Statistics
Matches: 34, Mismatches: 2, Indels: 6
0.81 0.05 0.14
Matches are distributed among these distances:
4 3 0.09
5 24 0.71
6 7 0.21
ACGTcount: A:0.77, C:0.05, G:0.18, T:0.00
Consensus pattern (5 bp):
AAAGA
Found at i:36443405 original size:54 final size:51
Alignment explanation
Indices: 36443266--36443405 Score: 172
Period size: 52 Copynumber: 2.7 Consensus size: 51
36443256 TGATATGTAT
**
36443266 TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATATGATTTTAG
1 TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATATGATAATAG
** *
36443317 TTCCCGTATAAGACCATAGCTGGGCTATGGCATCGGTGTGAATGTGATAATATG
1 TT-CCGTATAAGACCATAGCTGGGCTATGGCATCGGT-ACAATATGATAATA-G
* * *
36443371 ATTCCGTATAAGACCATATCTGGGATATGACATCG
1 -TTCCGTATAAGACCATAGCTGGGCTATGGCATCG
36443406 TATGTTATGT
Statistics
Matches: 77, Mismatches: 8, Indels: 5
0.86 0.09 0.06
Matches are distributed among these distances:
51 2 0.03
52 34 0.44
53 9 0.12
54 30 0.39
55 2 0.03
ACGTcount: A:0.28, C:0.18, G:0.24, T:0.30
Consensus pattern (51 bp):
TTCCGTATAAGACCATAGCTGGGCTATGGCATCGGTACAATATGATAATAG
Found at i:36444224 original size:20 final size:20
Alignment explanation
Indices: 36444199--36444256 Score: 62
Period size: 20 Copynumber: 2.9 Consensus size: 20
36444189 TGCACATGGG
* *
36444199 CAGGCCACACTGGCATGTTC
1 CAGGCCACACGGGCATGTCC
* **
36444219 CAGGCCATACGGGTGTGTCC
1 CAGGCCACACGGGCATGTCC
*
36444239 CAGGCCACACGAGCATGT
1 CAGGCCACACGGGCATGT
36444257 GCCCCTATCC
Statistics
Matches: 29, Mismatches: 9, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.21, C:0.33, G:0.29, T:0.17
Consensus pattern (20 bp):
CAGGCCACACGGGCATGTCC
Found at i:36447453 original size:25 final size:24
Alignment explanation
Indices: 36447425--36447474 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 24
36447415 ATATTTTAAG
* *
36447425 TTAAATTTTATTATAATATAATATT
1 TTAAATTATATTATAAT-TAAAATT
*
36447450 TTAAATTATATTTTAATTAAAATT
1 TTAAATTATATTATAATTAAAATT
36447474 T
1 T
36447475 ATCATTGTTA
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
24 7 0.32
25 15 0.68
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (24 bp):
TTAAATTATATTATAATTAAAATT
Found at i:36448554 original size:14 final size:14
Alignment explanation
Indices: 36448531--36448560 Score: 51
Period size: 14 Copynumber: 2.1 Consensus size: 14
36448521 TTTTATAAAA
36448531 TATTTAATTTTTAT
1 TATTTAATTTTTAT
*
36448545 TATTTTATTTTTAT
1 TATTTAATTTTTAT
36448559 TA
1 TA
36448561 CTGAATTAAG
Statistics
Matches: 15, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.27, C:0.00, G:0.00, T:0.73
Consensus pattern (14 bp):
TATTTAATTTTTAT
Found at i:36448620 original size:21 final size:22
Alignment explanation
Indices: 36448580--36448620 Score: 57
Period size: 21 Copynumber: 1.9 Consensus size: 22
36448570 GGTGCGGGTT
**
36448580 AGTCTCAAGTTTGGGTTTTTCG
1 AGTCTCAAGTTTGGACTTTTCG
36448602 AGTCT-AAGTTTGGACTTTT
1 AGTCTCAAGTTTGGACTTTT
36448621 TTTTGTTCAA
Statistics
Matches: 17, Mismatches: 2, Indels: 1
0.85 0.10 0.05
Matches are distributed among these distances:
21 12 0.71
22 5 0.29
ACGTcount: A:0.17, C:0.12, G:0.24, T:0.46
Consensus pattern (22 bp):
AGTCTCAAGTTTGGACTTTTCG
Found at i:36448620 original size:22 final size:22
Alignment explanation
Indices: 36448580--36448621 Score: 59
Period size: 22 Copynumber: 1.9 Consensus size: 22
36448570 GGTGCGGGTT
*
36448580 AGTCTCAAGTTTGGGTTTTTCG
1 AGTCTCAAGTTTGGCTTTTTCG
36448602 AGTCT-AAGTTTGGACTTTTT
1 AGTCTCAAGTTTGG-CTTTTT
36448622 TTTGTTCAAA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 8 0.44
22 10 0.56
ACGTcount: A:0.17, C:0.12, G:0.24, T:0.48
Consensus pattern (22 bp):
AGTCTCAAGTTTGGCTTTTTCG
Found at i:36449945 original size:14 final size:13
Alignment explanation
Indices: 36449926--36450008 Score: 53
Period size: 14 Copynumber: 6.1 Consensus size: 13
36449916 TTTTTTAAAA
36449926 AAATAAATAAATAT
1 AAATAAAT-AATAT
36449940 AAATAAATAATAT
1 AAATAAATAATAT
* * *
36449953 ATTATTTAACAATAT
1 A--AATAAATAATAT
* *
36449968 --ACAAATGAATTT
1 AAATAAAT-AATAT
36449980 AAGATAAATAATAT
1 AA-ATAAATAATAT
36449994 AAAGTAAATAATAT
1 AAA-TAAATAATAT
36450008 A
1 A
36450009 CAAGACAATA
Statistics
Matches: 52, Mismatches: 10, Indels: 14
0.68 0.13 0.18
Matches are distributed among these distances:
11 2 0.04
12 4 0.08
13 7 0.13
14 25 0.48
15 14 0.27
ACGTcount: A:0.61, C:0.02, G:0.04, T:0.33
Consensus pattern (13 bp):
AAATAAATAATAT
Found at i:36450677 original size:28 final size:29
Alignment explanation
Indices: 36450618--36450677 Score: 68
Period size: 28 Copynumber: 2.1 Consensus size: 29
36450608 TTTCATTTTT
*** *
36450618 AACATTTAAACCATTTTTTTGTTTAAAGA
1 AACATTTAAACCATTTTTTTGCAAAAAAA
*
36450647 AACATTTTAACC-TTTTTTTGCAAAAAAA
1 AACATTTAAACCATTTTTTTGCAAAAAAA
36450675 AAC
1 AAC
36450678 CCTAAAAGCT
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
28 15 0.58
29 11 0.42
ACGTcount: A:0.42, C:0.13, G:0.05, T:0.40
Consensus pattern (29 bp):
AACATTTAAACCATTTTTTTGCAAAAAAA
Found at i:36451795 original size:88 final size:88
Alignment explanation
Indices: 36451684--36452213 Score: 731
Period size: 88 Copynumber: 6.0 Consensus size: 88
36451674 GTGGTCTATC
* * * ** *
36451684 ATTTTCAGCATGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTCCACTAT
1 ATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTAC
* * *
36451749 TGCTTAAGGAAATAAGATCTGTA
66 TGTTTAGGGAGATAAGATCTGTA
* * * *
36451772 ATTTCCAGCCTGTTTCCCTACTGCTTAGGCGGTTAAGGCTCACCATTTTTGATCCACTCCACTAC
1 ATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTAC
* *
36451837 TGTTTAGGGAAATAAGATTTGTA
66 TGTTTAGGGAGATAAGATCTGTA
* *
36451860 ATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGACTCACCTTCTTCGATCCACTCCACTAC
1 ATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTAC
*
36451925 TGTTTAGGGAGATCAGATCTGTA
66 TGTTTAGGGAGATAAGATCTGTA
* * * * *
36451948 ATTTTCAGCCTGTTTCCCTACTGTTTAGGGGGGGTTAAGGCTTACCGTCTTCTATCCACTACACT
1 ATTTCCAGCCTGTTTCCCTACTGCTTA--GGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACT
*
36452013 ACTGTTTAGGGAGATAGGATCTGTA
64 ACTGTTTAGGGAGATAAGATCTGTA
* *
36452038 ATTTCCAGCTTGTGTT-CCTACTGCTTAAGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTA
1 ATTTCCAGCCTGT-TTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTA
*
36452102 CTATTTAGGGAGATAAGATCTGTA
65 CTGTTTAGGGAGATAAGATCTGTA
* *
36452126 ATCTT-CAGCCTGTTTCCCTACTGCTCAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTA
1 AT-TTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTA
* *
36452190 CTGCTTAAGGAGATAAGATCTGTA
65 CTGTTTAGGGAGATAAGATCTGTA
36452214 GAATCGATTT
Statistics
Matches: 391, Mismatches: 46, Indels: 10
0.87 0.10 0.02
Matches are distributed among these distances:
87 2 0.01
88 310 0.79
89 2 0.01
90 75 0.19
91 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (88 bp):
ATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTAC
TGTTTAGGGAGATAAGATCTGTA
Found at i:36452094 original size:266 final size:264
Alignment explanation
Indices: 36451684--36452213 Score: 753
Period size: 266 Copynumber: 2.0 Consensus size: 264
36451674 GTGGTCTATC
** * *
36451684 ATTTTCAGCATGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCTGCTCCACTAT
1 ATTTTCAGCATGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCCACTACACTAC
36451749 TGCTTAAGGAAATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGCGGTTAAGGCTCA
66 TGCTTAAGGAAATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGCGGTTAAGGCTCA
* * * *
36451814 CCATTTTTGATCCACTCCACTACTGTTTAGGGAAATAAGATTTGTAAT-TTCCAGCCTGTTTCCC
131 CCATCTTCGATCCACTCCACTACTATTTAGGGAAATAAGATCTGTAATCTT-CAGCCTGTTTCCC
* * * *
36451878 TACTGCTTAGGGGGTTAAGACTCACCT-TCTTCGATCCACTCCACTACTGTTTAGGGAGATCAGA
195 TACTGCTCAGGGGGTTAAGACTCA-CTGTCTTCGATCCACTCCACTACTGCTTAAGGAGATAAGA
36451942 TCTGTA
259 TCTGTA
* * * * *
36451948 ATTTTCAGCCTGTTTCCCTACTGTTTAGGGGGGGTTAAGGCTTACCGTCTTCTATCCACTACACT
1 ATTTTCAGCATGTTTCCCTACTGCTTA--GGGGGATAAGGCTCACCGTCTTCGATCCACTACACT
* * * * *
36452013 ACTGTTTAGGGAGATAGGATCTGTAATTTCCAGCTTGTGTT-CCTACTGCTTAAGG-GGTTAAGG
64 ACTGCTTAAGGAAATAAGATCTGTAATTTCCAGCCTGT-TTCCCTACTGCTT-AGGCGGTTAAGG
* *
36452076 CTCACCGTCTTCGATCCACTCCACTACTATTTAGGGAGATAAGATCTGTAATCTTCAGCCTGTTT
127 CTCACCATCTTCGATCCACTCCACTACTATTTAGGGAAATAAGATCTGTAATCTTCAGCCTGTTT
*
36452141 CCCTACTGCTCAGGGGGTTAAGGCTCACTGTCTTCGATCCACTCCACTACTGCTTAAGGAGATAA
192 CCCTACTGCTCAGGGGGTTAAGACTCACTGTCTTCGATCCACTCCACTACTGCTTAAGGAGATAA
36452206 GATCTGTA
257 GATCTGTA
36452214 GAATCGATTT
Statistics
Matches: 235, Mismatches: 25, Indels: 10
0.87 0.09 0.04
Matches are distributed among these distances:
264 25 0.11
265 2 0.01
266 201 0.86
267 7 0.03
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (264 bp):
ATTTTCAGCATGTTTCCCTACTGCTTAGGGGGATAAGGCTCACCGTCTTCGATCCACTACACTAC
TGCTTAAGGAAATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGCGGTTAAGGCTCA
CCATCTTCGATCCACTCCACTACTATTTAGGGAAATAAGATCTGTAATCTTCAGCCTGTTTCCCT
ACTGCTCAGGGGGTTAAGACTCACTGTCTTCGATCCACTCCACTACTGCTTAAGGAGATAAGATC
TGTA
Found at i:36453486 original size:88 final size:88
Alignment explanation
Indices: 36453332--36453785 Score: 646
Period size: 88 Copynumber: 5.1 Consensus size: 88
36453322 GCTTAAGGAA
* *
36453332 ATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGCGGTTAAGGCTCACCATT-TTTGA
1 ATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACC-TTCTTCGA
*
36453396 TCCACTCCACTACTGTTTAGGGAA
65 TCCACTCCACTACTGTTTAGGGAG
* *
36453420 ATAAGATTTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGACTCACCTTCTTCGAT
1 ATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCTTCTTCGAT
36453485 CCACTCCACTACTGTTTAGGGAG
66 CCACTCCACTACTGTTTAGGGAG
* * * * * *
36453508 ATCAGATCTGTAATTTTCAGCCTGTTTCCCTACTGTTTAGGGGGGGTTAAGGCTTACCGTCTTCT
1 ATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTA--GGGGGTTAAGGCTCACCTTCTTCG
*
36453573 ATCCACTACACTACTGTTTAGGGAG
64 ATCCACTCCACTACTGTTTAGGGAG
* * * *
36453598 ATAGGATCTGTAATTTCCAGCTTGTGTT-CCTACTGCTTAAGGGGTTAAGGCTCACCGTCTTCGA
1 ATAAGATCTGTAATTTCCAGCCTGT-TTCCCTACTGCTTAGGGGGTTAAGGCTCACCTTCTTCGA
*
36453662 TCCACTCCACTACTATTTAGGGAG
65 TCCACTCCACTACTGTTTAGGGAG
*
36453686 ATAAGATCTGTAATCTT-CAGCCTGTTTCCCTACTGCTCAGGGGGTTAAGGCTCA-CTGTCTTCG
1 ATAAGATCTGTAAT-TTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCT-TCTTCG
* *
36453749 ATCCACTCCACTACTGCTTAAGGAG
64 ATCCACTCCACTACTGTTTAGGGAG
36453774 ATAAGATCTGTA
1 ATAAGATCTGTA
36453786 GAATCGATTT
Statistics
Matches: 327, Mismatches: 32, Indels: 14
0.88 0.09 0.04
Matches are distributed among these distances:
87 5 0.02
88 243 0.74
89 2 0.01
90 75 0.23
91 2 0.01
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (88 bp):
ATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCTTCTTCGAT
CCACTCCACTACTGTTTAGGGAG
Found at i:36453632 original size:178 final size:176
Alignment explanation
Indices: 36453332--36453785 Score: 660
Period size: 178 Copynumber: 2.6 Consensus size: 176
36453322 GCTTAAGGAA
* * * *
36453332 ATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGGCGGTTAAGGCTCACCAT-TTTTGA
1 ATAAGATCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCT-A
* * *
36453396 TCCACTCCACTACTGTTTAGGGAAATAAGATTTGTAATTTCCAGCCTGTTTCCCTACTGCTTAGG
65 TCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAAG
* *
36453461 GGGTTAAGACTCACCTTCTTCGATCCACTCCACTACTGTTTAGGGAG
130 GGGTTAAGACTCACCGTCTTCGATCCACTCCACTACTATTTAGGGAG
* * *
36453508 ATCAGATCTGTAATTTTCAGCCTGTTTCCCTACTGTTTAGGGGGGGTTAAGGCTTACCGTCTTCT
1 ATAAGATCTGTAATTTTCAGCCTGTTTCCCTACTGCTTA--GGGGGTTAAGGCTCACCGTCTTCT
* * *
36453573 ATCCACTACACTACTGTTTAGGGAGATAGGATCTGTAATTTCCAGCTTGTGTT-CCTACTGCTTA
64 ATCCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATTTCCAGCCTGT-TTCCCTACTGCTTA
*
36453637 AGGGGTTAAGGCTCACCGTCTTCGATCCACTCCACTACTATTTAGGGAG
128 AGGGGTTAAGACTCACCGTCTTCGATCCACTCCACTACTATTTAGGGAG
* * * *
36453686 ATAAGATCTGTAATCTTCAGCCTGTTTCCCTACTGCTCAGGGGGTTAAGGCTCACTGTCTTCGAT
1 ATAAGATCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCTAT
* *
36453751 CCACTCCACTACTGCTTAAGGAGATAAGATCTGTA
66 CCACTCCACTACTGTTTAGGGAGATAAGATCTGTA
36453786 GAATCGATTT
Statistics
Matches: 247, Mismatches: 27, Indels: 8
0.88 0.10 0.03
Matches are distributed among these distances:
176 90 0.36
178 152 0.62
179 5 0.02
ACGTcount: A:0.22, C:0.24, G:0.20, T:0.33
Consensus pattern (176 bp):
ATAAGATCTGTAATTTTCAGCCTGTTTCCCTACTGCTTAGGGGGTTAAGGCTCACCGTCTTCTAT
CCACTCCACTACTGTTTAGGGAGATAAGATCTGTAATTTCCAGCCTGTTTCCCTACTGCTTAAGG
GGTTAAGACTCACCGTCTTCGATCCACTCCACTACTATTTAGGGAG
Found at i:36458602 original size:22 final size:23
Alignment explanation
Indices: 36458539--36458603 Score: 64
Period size: 22 Copynumber: 2.9 Consensus size: 23
36458529 CTATTATTTA
* *
36458539 AATCAAGATTAAAATGTTAAAATT
1 AATCAA-ATTAAAATATTAAAAAT
*
36458563 AGA--AAATAAAAATATTAAAAAT
1 A-ATCAAATTAAAATATTAAAAAT
36458585 AATCAAATTAAAAT-TTAAA
1 AATCAAATTAAAATATTAAA
36458604 GAGTAAACCT
Statistics
Matches: 34, Mismatches: 4, Indels: 8
0.74 0.09 0.17
Matches are distributed among these distances:
21 1 0.03
22 20 0.59
23 11 0.32
24 1 0.03
25 1 0.03
ACGTcount: A:0.63, C:0.03, G:0.05, T:0.29
Consensus pattern (23 bp):
AATCAAATTAAAATATTAAAAAT
Found at i:36459701 original size:43 final size:43
Alignment explanation
Indices: 36459654--36459789 Score: 104
Period size: 43 Copynumber: 3.1 Consensus size: 43
36459644 AATCTTATCT
36459654 CCCTAAACAGTAGTGGAGTGGATCAAGACGGTGAGTCTTAACC
1 CCCTAAACAGTAGTGGAGTGGATCAAGACGGTGAGTCTTAACC
* * * * * *
36459697 CCCTAAGCAGTAG-GAAACAGGCTGGA--AATTAC--AGA-TCTTATCT
1 CCCTAAACAGTAGTG---GA-G-TGGATCAA-GACGGTGAGTCTTAACC
*
36459740 CCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACC
1 CCCTAAACAGTAGTGGAGTGGATC-AAGACGGTGAGTCTTAACC
36459784 CCCTAA
1 CCCTAA
36459790 GCAGAGGAAA
Statistics
Matches: 67, Mismatches: 13, Indels: 25
0.64 0.12 0.24
Matches are distributed among these distances:
39 4 0.06
40 1 0.01
41 3 0.04
42 3 0.04
43 32 0.48
44 14 0.21
45 3 0.04
46 3 0.04
47 4 0.06
ACGTcount: A:0.32, C:0.23, G:0.25, T:0.21
Consensus pattern (43 bp):
CCCTAAACAGTAGTGGAGTGGATCAAGACGGTGAGTCTTAACC
Found at i:36459923 original size:44 final size:43
Alignment explanation
Indices: 36459874--36460061 Score: 164
Period size: 44 Copynumber: 4.2 Consensus size: 43
36459864 AATAACCCCA
* *
36459874 TAAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCC
1 TAAGCAGTAGGG-AACAGGTTGAAAATTACAGACCTTATCTCCC
* * * ** * *
36459918 TAAGCAGTAGTGGAGCAGATCGAAGACGGT-GAG-CCTTATCCCCC
1 TAAGCAGTAG-GGAACAGGTTGAA-A-ATTACAGACCTTATCTCCC
* *
36459962 TAAGCAGTAGGGAAACAGGTTGAAAATGACAGACCACCTTATCTCTC
1 TAAGCAGTAGGG-AACAGGTTGAAAATTACAG---ACCTTATCTCCC
* *
36460009 TAAGCAGTAGGGAACGGGTTGAAAATTACAGATCTTATCTCCC
1 TAAGCAGTAGGGAACAGGTTGAAAATTACAGACCTTATCTCCC
*
36460052 TAAACAGTAG
1 TAAGCAGTAG
36460062 TGGAGCGGAT
Statistics
Matches: 112, Mismatches: 23, Indels: 19
0.73 0.15 0.12
Matches are distributed among these distances:
43 24 0.21
44 44 0.39
45 5 0.04
46 18 0.16
47 21 0.19
ACGTcount: A:0.34, C:0.21, G:0.23, T:0.22
Consensus pattern (43 bp):
TAAGCAGTAGGGAACAGGTTGAAAATTACAGACCTTATCTCCC
Found at i:36459931 original size:88 final size:88
Alignment explanation
Indices: 36459552--36459994 Score: 640
Period size: 88 Copynumber: 5.1 Consensus size: 88
36459542 AAATTGATTG
** * *
36459552 TACAGATCTTATCTCCCTAAGTAGTAGTGGAGTGGGTCGAAGACAGTGAGCCTTAACCCCCTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
* * * *
36459617 TAATAGGAAAACAGGCTGGAAAT
66 CAGTAGGGAAACAGGCTGAAAAT
* *
36459640 TACAAATCTTATCTCCCTAAACAGTAGTGGAGTGGATC-AAGACGGTGAGTCTTAACCCCCTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
*
36459704 CAGTA-GGAAACAGGCTGGAAAT
66 CAGTAGGGAAACAGGCTGAAAAT
36459726 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
* *
36459791 CAG-AGGAAAACAGGCTAAAAAT
66 CAGTAGGGAAACAGGCTGAAAAT
** * ** *
36459813 TACAGATCCGATCTCCCTAAACAGTAGTGGAGCGGATCGAAGACGGTGAGCAATAACCCCATAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
36459878 CAGTAGGGAAACAGGCTGAAAAT
66 CAGTAGGGAAACAGGCTGAAAAT
* ** *
36459901 TACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGCCTTATCCCCCTAAG
1 TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
*
36459966 CAGTAGGGAAACAGGTTGAAAAT
66 CAGTAGGGAAACAGGCTGAAAAT
*
36459989 GACAGA
1 TACAGA
36459995 CCACCTTATC
Statistics
Matches: 320, Mismatches: 32, Indels: 6
0.89 0.09 0.02
Matches are distributed among these distances:
86 54 0.17
87 131 0.41
88 135 0.42
ACGTcount: A:0.34, C:0.21, G:0.25, T:0.20
Consensus pattern (88 bp):
TACAGATCTTATCTCCCTAAACAGTAGTGGAGTGGATCGAAGACGGTGAGCCTTAACCCCCTAAG
CAGTAGGGAAACAGGCTGAAAAT
Found at i:36460013 original size:47 final size:46
Alignment explanation
Indices: 36459951--36460040 Score: 135
Period size: 47 Copynumber: 1.9 Consensus size: 46
36459941 AGACGGTGAG
36459951 CCTTATCCCCCTAAGCAGTAGGGAAACAGGTTGAAAATGACAGACCA
1 CCTTATCCCCCTAAGCAGTAGGG-AACAGGTTGAAAATGACAGACCA
* * * *
36459998 CCTTATCTCTCTAAGCAGTAGGGAACGGGTTGAAAATTACAGA
1 CCTTATCCCCCTAAGCAGTAGGGAACAGGTTGAAAATGACAGA
36460041 TCTTATCTCC
Statistics
Matches: 39, Mismatches: 4, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
46 18 0.46
47 21 0.54
ACGTcount: A:0.34, C:0.22, G:0.22, T:0.21
Consensus pattern (46 bp):
CCTTATCCCCCTAAGCAGTAGGGAACAGGTTGAAAATGACAGACCA
Found at i:36460120 original size:44 final size:43
Alignment explanation
Indices: 36459908--36460121 Score: 137
Period size: 44 Copynumber: 4.8 Consensus size: 43
36459898 AATTACAGAT
* * * *
36459908 CTTATCTCCCTAAGCAGTAGTGGAGCAGATCGAAGACGGTGAGC
1 CTTATCCCCCTAAGCAGTAG-GGAACAGATTGAAGACGGTCAGC
* **
36459952 CTTATCCCCCTAAGCAGTAGGGAAACAGGTTGAAAATGACAGACCA-C
1 CTTATCCCCCTAAGCAGTAGGG-AACAGATTG--AA-GAC-GGTCAGC
* * * * ** *
36459999 CTTATCTCTCTAAGCAGTAGGGAACGGGTTGAA-A-ATTACAGAT
1 CTTATCCCCCTAAGCAGTAGGGAACAGATTGAAGACGGT-CAG-C
* * * * *
36460042 CTTATCTCCCTAAACAGTAGTGGAGCGGATTGAAGACGGTGAGC
1 CTTATCCCCCTAAGCAGTAG-GGAACAGATTGAAGACGGTCAGC
*
36460086 CTTATCCCCCTAAGCAGTAGGGAAACAGACTGAAGA
1 CTTATCCCCCTAAGCAGTAGGG-AACAGATTGAAGA
36460122 TTACAAATCA
Statistics
Matches: 131, Mismatches: 27, Indels: 24
0.72 0.15 0.13
Matches are distributed among these distances:
41 2 0.02
42 1 0.01
43 22 0.17
44 66 0.50
45 3 0.02
46 11 0.08
47 24 0.18
48 2 0.02
ACGTcount: A:0.32, C:0.22, G:0.25, T:0.21
Consensus pattern (43 bp):
CTTATCCCCCTAAGCAGTAGGGAACAGATTGAAGACGGTCAGC
Found at i:36460149 original size:134 final size:134
Alignment explanation
Indices: 36459875--36460136 Score: 357
Period size: 134 Copynumber: 2.0 Consensus size: 134
36459865 ATAACCCCAT
*
36459875 AAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAGCAGTAGTGGAGCAGATCG
1 AAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCG
** * * *
36459940 AAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGGTTGAAAATGACAGACCACCTTATC
66 AAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGACTGAAAATGACAAACCA-CTAAGC
** *
36460005 TCTCT
130 TAGCG
* * * *
36460010 AAGCAGTAGGG-AACGGGTTGAAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCGGATTG
1 AAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCG
* * *
36460074 AAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGACTGAAGATTACAAATCA-TAAGC
66 AAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGACTGAAAATGACAAACCACTAAGC
36460137 AGTAGCGGAG
Statistics
Matches: 114, Mismatches: 13, Indels: 3
0.88 0.10 0.02
Matches are distributed among these distances:
132 3 0.03
134 100 0.88
135 11 0.10
ACGTcount: A:0.34, C:0.21, G:0.24, T:0.21
Consensus pattern (134 bp):
AAGCAGTAGGGAAACAGGCTGAAAATTACAGATCTTATCTCCCTAAACAGTAGTGGAGCAGATCG
AAGACGGTGAGCCTTATCCCCCTAAGCAGTAGGGAAACAGACTGAAAATGACAAACCACTAAGCT
AGCG
Found at i:36461754 original size:9 final size:10
Alignment explanation
Indices: 36461728--36461753 Score: 52
Period size: 10 Copynumber: 2.6 Consensus size: 10
36461718 AAATAATATA
36461728 TTTTTTTATT
1 TTTTTTTATT
36461738 TTTTTTTATT
1 TTTTTTTATT
36461748 TTTTTT
1 TTTTTT
36461754 AAAAATTCTT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 16 1.00
ACGTcount: A:0.08, C:0.00, G:0.00, T:0.92
Consensus pattern (10 bp):
TTTTTTTATT
Done.